Query 016749
Match_columns 383
No_of_seqs 174 out of 1425
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3udc_A Small-conductance mecha 30.9 3.2E+02 0.011 25.3 10.3 26 332-357 67-92 (285)
2 2vv5_A MSCS, small-conductance 28.0 3E+02 0.01 25.5 9.6 50 310-359 39-95 (286)
3 2esy_A LUNG surfactant protein 26.5 26 0.00089 23.2 1.3 16 25-40 1-16 (32)
4 3o7q_A L-fucose-proton symport 22.8 4.4E+02 0.015 24.0 23.8 53 151-205 125-177 (438)
5 1pw4_A Glycerol-3-phosphate tr 21.0 4.8E+02 0.016 23.8 23.7 61 155-217 131-194 (451)
6 2gfp_A EMRD, multidrug resista 20.7 2.7E+02 0.0093 25.0 7.6 68 154-223 99-168 (375)
7 1pw4_A Glycerol-3-phosphate tr 18.0 5.5E+02 0.019 23.3 13.4 59 158-218 361-422 (451)
8 3o7q_A L-fucose-proton symport 9.9 9.4E+02 0.032 21.7 13.4 51 155-209 359-409 (438)
9 1b4g_A Potassium channel; inac 6.6 2.5E+02 0.0085 18.4 1.8 23 47-69 5-27 (30)
10 3arc_L Photosystem II reaction 6.5 3.8E+02 0.013 18.3 2.7 20 174-193 8-27 (37)
No 1
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=30.90 E-value=3.2e+02 Score=25.30 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHhhhcccccc
Q 016749 332 YLQPSIAVVLGFIGCKMILDYFGFHI 357 (383)
Q Consensus 332 yL~~ga~~iL~fIGvkMll~~~~~~I 357 (383)
.++....+++.++++-+++..+|+++
T Consensus 67 ~~~~~~~~~i~~~~~~~~l~~~g~~~ 92 (285)
T 3udc_A 67 LTKNAVRYIIYFLAGASILKLFNIDM 92 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 45566778888888888888776654
No 2
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=28.01 E-value=3e+02 Score=25.50 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------hchHHHHHHHHHHHHHHHhhhccccccCh
Q 016749 310 LFAILGLRSLFTLISEGMADL-------EYLQPSIAVVLGFIGCKMILDYFGFHIST 359 (383)
Q Consensus 310 ifaIlgLRslyf~l~~ll~rf-------~yL~~ga~~iL~fIGvkMll~~~~~~IP~ 359 (383)
+++....|.+..++.+.+++. +.+...+.+++.++++-+++..+|+++..
T Consensus 39 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~ 95 (286)
T 2vv5_A 39 IVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTAS 95 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 344455555555555555442 44667777888888888888888776544
No 3
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=26.49 E-value=26 Score=23.20 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=11.4
Q ss_pred cCCCcCCCCCcccccc
Q 016749 25 SPTSTSQVPKLTSLLH 40 (383)
Q Consensus 25 ~~~~~~~~~~~~~~~~ 40 (383)
+||||++.|+..-+.+
T Consensus 1 sPPdYSa~P~grf~IP 16 (32)
T 2esy_A 1 SPPDYSAAPRGRFGIP 16 (32)
T ss_dssp CCCCCCSCCCSSSSCC
T ss_pred CCCccccCcCccccCc
Confidence 5899999988733333
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=22.79 E-value=4.4e+02 Score=24.02 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=32.6
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016749 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205 (383)
Q Consensus 151 ~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll 205 (383)
.+.=...+.-+....+.+.+. .|+++|.++.-+--.+.-+..++...++..+.
T Consensus 125 ~l~G~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 125 FIIAAGLGCLETAANPFVTVL--GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHhhHHHhhhhHHHHHHHH--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666777777776 58787777654433333456666666666666
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=20.96 E-value=4.8e+02 Score=23.79 Aligned_cols=61 Identities=11% Similarity=-0.194 Sum_probs=35.8
Q ss_pred HHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHH
Q 016749 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE---AVNLVLAG 217 (383)
Q Consensus 155 ~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~---~I~~igGa 217 (383)
...+.-+....+.+.+. .|+++|.++.-+--.+.-+.-++...++..+++.+. +..++.++
T Consensus 131 ~~~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~ 194 (451)
T 1pw4_A 131 WFQGMGWPPCGRTMVHW--WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 194 (451)
T ss_dssp HHHHHTHHHHHHHHHTT--CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred HHhhhccchHHHHHHHH--CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33455666677788876 577777666554333334555666777777666544 34444443
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=20.68 E-value=2.7e+02 Score=25.01 Aligned_cols=68 Identities=15% Similarity=-0.025 Sum_probs=36.5
Q ss_pred HHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHH
Q 016749 154 EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSS 223 (383)
Q Consensus 154 E~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~--I~~igGafLL~~a 223 (383)
-...+.-+....+.+.+. .|+++|.++.-+--.+.-+.-.+-..++..+.+.+.| ..++.++..+..+
T Consensus 99 g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDL--YERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 333444555566666664 4556666655443333345566667777777655444 4444454443333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=18.03 E-value=5.5e+02 Score=23.34 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=31.9
Q ss_pred chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhh--hHHHHHHHHH
Q 016749 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRF--EAVNLVLAGI 218 (383)
Q Consensus 158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvv-mR~ifI~~gv~Ll~~f--~~I~~igGaf 218 (383)
+.-|....+.+.+. .|++.|.++.-+-....-+ ...+.+.++..+.+.+ .+..++.++.
T Consensus 361 ~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 361 YGPVMLIGLHALEL--APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp THHHHHHHHHHHHT--SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred hchHHHHHHHHHHH--hchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444444555554 5766555544333333335 7777787877777653 3444444443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=9.93 E-value=9.4e+02 Score=21.70 Aligned_cols=51 Identities=12% Similarity=-0.080 Sum_probs=32.0
Q ss_pred HHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016749 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (383)
Q Consensus 155 ~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~ 209 (383)
...+.=+....+.+.+. .|++ +.++..+.. .+.+...+.+.+...+.+.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 359 AFMSIQYPTIFSLGIKN--LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHTTHHHHHHHHHHSS--CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh--cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 34444445566666665 5655 777766666 444677777777777776633
No 9
>1b4g_A Potassium channel; inactivation GATE, phosphorylation; HET: SEP; NMR {Homo sapiens} SCOP: j.12.1.1 PDB: 1b4i_A* 1ztn_A
Probab=6.62 E-value=2.5e+02 Score=18.38 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.1
Q ss_pred CcchhhccccCCCCCcccccccC
Q 016749 47 PTFYSVSHNRRGQYSPLLACAKG 69 (383)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~ 69 (383)
|+-++...|++++.+|==+|...
T Consensus 5 vcvSs~~gRk~gnk~s~KaC~sa 27 (30)
T 1b4g_A 5 VCVSSYRGRKSGNKPPSKTCLKE 27 (30)
T ss_dssp TBCCCSCSCSSSCCCSSCCCSCC
T ss_pred ccchhhhcccccCCCCchhhhhh
Confidence 45567778888888887777654
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.50 E-value=3.8e+02 Score=18.29 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=14.7
Q ss_pred CChhhHhHHHHHHHHHHHHH
Q 016749 174 VPVMYQNRVLSYGIAGAIVF 193 (383)
Q Consensus 174 lP~~~Q~rvL~~GI~gAvvm 193 (383)
.|-|.-|.-|+||++.-+++
T Consensus 8 q~VELNRTSLy~GLLlifvl 27 (37)
T 3arc_L 8 QPVELNRTSLYLGLLLILVL 27 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHH
T ss_pred CcceechhhHHHHHHHHHHH
Confidence 46677788999999875443
Done!