Query 016749
Match_columns 383
No_of_seqs 174 out of 1425
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 03:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016749.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016749hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 21.6 2.1E+02 0.015 23.7 20.7 32 151-184 124-155 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 18.6 2.2E+02 0.016 22.7 13.2 72 150-223 319-393 (417)
3 d2vv5a3 f.34.1.1 (A:27-112) Me 17.6 1.5E+02 0.011 20.5 8.6 52 309-360 12-70 (86)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 12.5 3.5E+02 0.026 22.1 11.5 49 156-208 356-407 (447)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 12.2 77 0.0056 20.0 2.7 21 174-194 8-28 (37)
6 d1be3k_ f.23.15.1 (K:) Subunit 6.9 1.5E+02 0.011 16.9 2.3 16 178-193 3-18 (26)
7 d1ag7a_ g.3.6.1 (A:) Conotoxin 3.9 2.1E+02 0.016 17.2 1.7 18 56-73 5-26 (34)
8 d1iyjb3 b.40.4.3 (B:2599-2731) 3.1 2.7E+02 0.02 21.7 2.0 37 9-46 94-131 (133)
9 d3cx5e2 f.23.12.1 (E:31-86) Ir 2.9 4.1E+02 0.03 17.8 2.6 25 329-353 24-48 (56)
10 d1bnba_ g.9.1.1 (A:) Beta-defe 2.6 1.4E+02 0.0099 18.9 -0.3 19 54-73 6-24 (38)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.62 E-value=2.1e+02 Score=23.69 Aligned_cols=32 Identities=3% Similarity=-0.102 Sum_probs=19.5
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHH
Q 016749 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS 184 (383)
Q Consensus 151 ~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~ 184 (383)
.+.-...+.-.....+.+.+. .|+++|.++.-
T Consensus 124 ~~~g~~~~~~~~~~~~~i~~~--~~~~~r~~~~~ 155 (447)
T d1pw4a_ 124 FLCGWFQGMGWPPCGRTMVHW--WSQKERGGIVS 155 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHTT--CTTTHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHH--HHhhccccccc
Confidence 333344455666667777776 57777766553
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=18.61 E-value=2.2e+02 Score=22.66 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=40.7
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHH
Q 016749 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRF--EAVNLVLAGILLFSS 223 (383)
Q Consensus 150 ~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f--~~I~~igGafLL~~a 223 (383)
..+.-...+.-+....+.+.+. .|++.|.++.-.....+. +...+...++.++.+.+ .+..++.|+..+..+
T Consensus 319 ~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 393 (417)
T d1pv7a_ 319 KTLHMFEVPFLLVGCFKYITSQ--FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 3444455566666677777765 688877665433222222 44566677777777664 345555555444333
No 3
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=17.61 E-value=1.5e+02 Score=20.50 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-------hchHHHHHHHHHHHHHHHhhhccccccChh
Q 016749 309 NLFAILGLRSLFTLISEGMADL-------EYLQPSIAVVLGFIGCKMILDYFGFHISTE 360 (383)
Q Consensus 309 ~ifaIlgLRslyf~l~~ll~rf-------~yL~~ga~~iL~fIGvkMll~~~~~~IP~~ 360 (383)
..++....|.....+.+.++|- +.+....-+.+..+++-+.++.+|+++...
T Consensus 12 l~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l 70 (86)
T d2vv5a3 12 IIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASV 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3445556666666677776653 235667778899999999999988876553
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.51 E-value=3.5e+02 Score=22.15 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=24.3
Q ss_pred HhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Q 016749 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA---IVFRLSLILLGTATLQRF 208 (383)
Q Consensus 156 sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gA---vvmR~ifI~~gv~Ll~~f 208 (383)
..+.-+........+. .|++.|-++ .|+... ++.-++...++..+.+.+
T Consensus 356 ~~~~~~~~~~~~~~~~--~p~~~~g~~--~g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 356 LIYGPVMLIGLHALEL--APKKAAGTA--AGFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HHTHHHHHHHHHHHHT--SCTTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHH--cCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555554 576665554 344322 223334455555666554
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.17 E-value=77 Score=19.98 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=15.7
Q ss_pred CChhhHhHHHHHHHHHHHHHH
Q 016749 174 VPVMYQNRVLSYGIAGAIVFR 194 (383)
Q Consensus 174 lP~~~Q~rvL~~GI~gAvvmR 194 (383)
.|-+.-|.-|+||++.-.++-
T Consensus 8 q~veLNrtsLy~GlLlifvl~ 28 (37)
T d2axtl1 8 QPVELNRTSLYLGLLLILVLA 28 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHH
Confidence 567778889999998755443
No 6
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.95 E-value=1.5e+02 Score=16.94 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=11.9
Q ss_pred hHhHHHHHHHHHHHHH
Q 016749 178 YQNRVLSYGIAGAIVF 193 (383)
Q Consensus 178 ~Q~rvL~~GI~gAvvm 193 (383)
|-+.+-.||-.||+.+
T Consensus 3 wvptaqlwgavgavgl 18 (26)
T d1be3k_ 3 WVPTAQLWGAVGAVGL 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhhhcceeE
Confidence 4556778999998854
No 7
>d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus geographus, GS}
Probab=3.88 E-value=2.1e+02 Score=17.18 Aligned_cols=18 Identities=33% Similarity=0.691 Sum_probs=11.1
Q ss_pred cCCCCCc----ccccccCCCcc
Q 016749 56 RRGQYSP----LLACAKGTEQE 73 (383)
Q Consensus 56 ~~~~~~~----~~~~~~~~~~~ 73 (383)
|+++++| =++|.|+..|.
T Consensus 5 rgsrcppqccmglrcgrgnpqk 26 (34)
T d1ag7a_ 5 RGSRCPPQCCMGLRCGRGNPQK 26 (34)
T ss_dssp TTSCSSSCBCTTEEEECSSSCE
T ss_pred CCCCCChhhceeeeccCCCchh
Confidence 4555555 26777777663
No 8
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.08 E-value=2.7e+02 Score=21.71 Aligned_cols=37 Identities=32% Similarity=0.366 Sum_probs=26.0
Q ss_pred cCccCCCcc-cceeEEecCCCcCCCCCccccccccCCCC
Q 016749 9 SGVQAPHKF-DSLLLRFSPTSTSQVPKLTSLLHFCNSQA 46 (383)
Q Consensus 9 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (383)
.+--.|+.- |++.|+++-.+++.. +|.++|-|+.-+-
T Consensus 94 ~~~~sPLE~~~s~~L~i~~Nstr~a-~w~~kLGf~~~p~ 131 (133)
T d1iyjb3 94 PDACAPLEAPDSLRLKISANSTRPA-RWHSKLGFFHDPR 131 (133)
T ss_dssp CSCCCGGGCCSSCEEECCTTTEEEC-CSSSCSEECSCCS
T ss_pred CCCcCcccccCccEEEEeecceeec-cccccCcccCCCC
Confidence 344456655 888899986655555 7889999987543
No 9
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.91 E-value=4.1e+02 Score=17.83 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.2
Q ss_pred hhhchHHHHHHHHHHHHHHHhhhcc
Q 016749 329 DLEYLQPSIAVVLGFIGCKMILDYF 353 (383)
Q Consensus 329 rf~yL~~ga~~iL~fIGvkMll~~~ 353 (383)
-|.|+-.|...++...|.|-.++.|
T Consensus 24 ~fsY~mvGs~g~~~a~~AKstV~~F 48 (56)
T d3cx5e2 24 SYAYFMVGAMGLLSSAGAKSTVETF 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeehhHHHHHHHHHHHHHHH
Confidence 4778888888888888888887765
No 10
>d1bnba_ g.9.1.1 (A:) Beta-defensin, BD {Cow (Bos taurus), BD12 [TaxId: 9913]}
Probab=2.61 E-value=1.4e+02 Score=18.93 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=14.2
Q ss_pred cccCCCCCcccccccCCCcc
Q 016749 54 HNRRGQYSPLLACAKGTEQE 73 (383)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~ 73 (383)
++.++-+.| ++|.+..+|-
T Consensus 6 ~~n~GiCvp-ircpg~mrQI 24 (38)
T d1bnba_ 6 GRNGGVCIP-IRCPVPMRQI 24 (38)
T ss_dssp TTTTSEEEE-SSCCTTSEEE
T ss_pred EcCCeEEEe-eeCCcCceee
Confidence 445678888 8998887774
Done!