BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016750
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/376 (49%), Positives = 234/376 (62%), Gaps = 4/376 (1%)
Query: 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLV 60
+++ +DTN+EER KGKTVEVGRA+FETE FTILDAPGHKS+VPNMI GASQAD+ VLV
Sbjct: 66 LSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLV 125
Query: 61 ISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMT 120
ISAR QTREH M MDD TVNWS ERY+E + K+
Sbjct: 126 ISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLV 185
Query: 121 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNG 180
PFLK G+N KKD+ F+P SGL G N+K + D CPW+ G LD + R +G
Sbjct: 186 PFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD--FCPWYIGLPFIPYLDNLPNFNRSVDG 243
Query: 181 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGE 240
P R+PI+DK+KDMGTVV+GK+ESGS+ +G L++MPNK V+VL I DD PGE
Sbjct: 244 PIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGE 303
Query: 241 NLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHA 300
NL+IRL GIEEE+IL GF+L + + F Q+ I+E +I GY AVLHIH
Sbjct: 304 NLKIRLKGIEEEEILPGFILCDPSNLCHSGRTFDVQIVIIE--HKSIICPGYNAVLHIHT 361
Query: 301 VVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFT 360
+EE EI L+ +D + + R++ +IC E F DF Q+GRFT
Sbjct: 362 CIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFT 421
Query: 361 LRTEGKTVAVGKVTEL 376
LR EGKT+A+GKV +L
Sbjct: 422 LRDEGKTIAIGKVLKL 437
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 237/378 (62%), Gaps = 6/378 (1%)
Query: 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLV 60
+++ +D+ EER KGKTVEVGRA+FETE RF++LDAPGHK YV NMI+GASQADIGVLV
Sbjct: 92 LSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLV 151
Query: 61 ISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMT 120
ISAR QTREH + MD+ +V WS+ERY E K++
Sbjct: 152 ISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLS 211
Query: 121 PFLK-ASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPN 179
FL+ +GYN K DV+++P+S G N+K RVD S+CPW+ GP L E LD + R N
Sbjct: 212 MFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVN 271
Query: 180 GPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGP 238
PF MPI K+KD+GT++ GK+E+GS+++ ++LVMP ++V AIY + D + +
Sbjct: 272 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSIC 331
Query: 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHI 298
G+ +R+R+ G ++ D+ +G+VL+S PV A T FIAQ+ ILEL +I T GY V+HI
Sbjct: 332 GDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILEL--PSILTTGYSCVMHI 388
Query: 299 HAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGR 358
H VEE +LLH++D G ++ ++ +C E+F D+ +GR
Sbjct: 389 HTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGR 447
Query: 359 FTLRTEGKTVAVGKVTEL 376
FTLR +G TVAVGKV ++
Sbjct: 448 FTLRDQGTTVAVGKVVKI 465
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 200/378 (52%), Gaps = 7/378 (1%)
Query: 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLV 60
A+++D +EER +G T+ + FET+ FTI+DAPGH+ +V NMI+GASQAD +LV
Sbjct: 55 FAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILV 114
Query: 61 ISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMT 120
+SA+ QTREH++ MD + ++RY EI +++
Sbjct: 115 VSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVS 174
Query: 121 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNG 180
F+++ G+N K V+F+P+ G N+ + + W+NGP L E LD++E+ P+ +
Sbjct: 175 KFMRSYGFNTNK-VRFVPVVAPSGDNITHKSEN--MKWYNGPTLEEYLDQLELPPKPVDK 231
Query: 181 PFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238
P R+PI D + +GTV +G+VESG ++ GD ++ MP +V +I ++ A P
Sbjct: 232 PLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEP 291
Query: 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHI 298
G+N+ + G+E++DI G V+ P EF A +I+ + GY VLH+
Sbjct: 292 GDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTA--RIIVVWHPTALANGYTPVLHV 349
Query: 299 HAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGR 358
H C + EL+ ++D G + + + + +C EK+ +F LGR
Sbjct: 350 HTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGR 409
Query: 359 FTLRTEGKTVAVGKVTEL 376
F +R GKTV VG + ++
Sbjct: 410 FAMRDMGKTVGVGIIVDV 427
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 198/378 (52%), Gaps = 7/378 (1%)
Query: 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLV 60
A+I+D +EER +G T+++ FET+ FTI+DAPGH+ +V NMI+GASQAD +LV
Sbjct: 58 FAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILV 117
Query: 61 ISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMT 120
+SAR QTREH++ MD VN+ ++RY+ + S +
Sbjct: 118 VSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLK 177
Query: 121 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNG 180
F+K GY V K + F+P+S G N+ R PW+NGP L EALD+++ + +
Sbjct: 178 KFMKGLGYQVDK-IPFIPVSAWKGDNLIERSPN--MPWYNGPTLVEALDQLQPPAKPVDK 234
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238
P R+P+ + + GTV +G+VE+G +R GD ++ MP +V +I +++ A P
Sbjct: 235 PLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEP 294
Query: 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHI 298
G+N+ + G+ + DI G V + KP EF A +I + + T GY V+H+
Sbjct: 295 GDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVAEEFEA--RIFVIWHPSAITVGYTPVIHV 352
Query: 299 HAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGR 358
H I+E+ ++D G + R + + EKF++ QLGR
Sbjct: 353 HTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGR 412
Query: 359 FTLRTEGKTVAVGKVTEL 376
F +R +TV +G VT++
Sbjct: 413 FAMRDMNRTVGIGIVTDV 430
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 198/378 (52%), Gaps = 7/378 (1%)
Query: 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLV 60
A+I+D +EER +G T+++ FET+ FTI+DAPGH+ +V NMI+GASQAD +LV
Sbjct: 55 FAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILV 114
Query: 61 ISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMT 120
+SAR QTREH++ MD VN+ ++RY+ + S +
Sbjct: 115 VSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLK 174
Query: 121 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNG 180
F+K GY V K + F+P+S G N+ R PW+NGP L EALD+++ + +
Sbjct: 175 KFMKGLGYQVDK-IPFIPVSAWKGDNLIERSPN--MPWYNGPTLVEALDQLQPPAKPVDK 231
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238
P R+P+ + + GTV +G+VE+G +R GD ++ MP +V +I +++ A P
Sbjct: 232 PLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEP 291
Query: 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHI 298
G+N+ + G+ + DI G V + KP EF A +I + + T GY V+H+
Sbjct: 292 GDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVAEEFEA--RIFVIWHPSAITVGYTPVIHV 349
Query: 299 HAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGR 358
H I+E+ ++D G + R + + EKF++ QLGR
Sbjct: 350 HTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGR 409
Query: 359 FTLRTEGKTVAVGKVTEL 376
F +R +TV +G VT++
Sbjct: 410 FAMRDMNRTVGIGIVTDV 427
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 121/196 (61%), Gaps = 2/196 (1%)
Query: 181 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGE 240
P R+PI+DK+KDMGTVV+GK+ESGS+ +G L++MPNK V+VL I DD PGE
Sbjct: 6 PIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGE 65
Query: 241 NLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHA 300
NL+IRL GIEEE+IL GF+L + F AQ+ I+E +I GY AVLHIH
Sbjct: 66 NLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIE--HKSIICPGYNAVLHIHT 123
Query: 301 VVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFT 360
+EE EI L+ +D + + R++ +IC E F DF Q+GRFT
Sbjct: 124 CIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFT 183
Query: 361 LRTEGKTVAVGKVTEL 376
LR EGKT+A+GKV +L
Sbjct: 184 LRDEGKTIAIGKVLKL 199
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 177/385 (45%), Gaps = 22/385 (5%)
Query: 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVI 61
A+++D + ER +G T+++ FET + T++DAPGH+ ++ NMI+G SQAD +L+I
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILII 116
Query: 62 SARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTP 121
+ QTREH + MD +V W + R+ EI + +
Sbjct: 117 AGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--SVKWDESRFQEIVKETSN 174
Query: 122 FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWW------------NGPCLFEALD 169
F+K GYN K V F+PISG G NM + PW+ G L EA+D
Sbjct: 175 FIKKVGYN-PKTVPFVPISGWNGDNMIEATTNA--PWYKGWEKETKAGVVKGKTLLEAID 231
Query: 170 RIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIY 227
IE R + P R+P+ D +K +GTV +G+VE+G ++ G + P +V ++
Sbjct: 232 AIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVE 291
Query: 228 CDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNA 286
++ PG+N+ + + ++I G V P F A + +L
Sbjct: 292 MHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLN--HPG 349
Query: 287 IFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSIC 346
+AGY VL H C ELL + D +G + + + +C
Sbjct: 350 QISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMC 409
Query: 347 TEKFADFAQLGRFTLRTEGKTVAVG 371
E F+++ LGRF +R +TVAVG
Sbjct: 410 VEAFSEYPPLGRFAVRDMRQTVAVG 434
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 123/199 (61%), Gaps = 5/199 (2%)
Query: 179 NGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAG 237
+ PF MPI K+KD+GT++ GK+E+GS+++ ++LVMP ++V AIY + D + +
Sbjct: 5 SAPFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSI 64
Query: 238 PGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLH 297
G+ +R+R+ G ++ D+ +G+VL+S PV A T FIAQ+ ILEL +I T GY V+H
Sbjct: 65 CGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILEL--PSILTTGYSCVMH 121
Query: 298 IHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLG 357
IH VEE +LLH++D G ++ ++ +C E+F D+ +G
Sbjct: 122 IHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMG 180
Query: 358 RFTLRTEGKTVAVGKVTEL 376
RFTLR +G TVAVGKV ++
Sbjct: 181 RFTLRDQGTTVAVGKVVKI 199
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 185/388 (47%), Gaps = 36/388 (9%)
Query: 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVI 61
A+++DT EEER +G T++V FE++ + I DAPGH+ ++ MI+GAS AD VLV+
Sbjct: 227 AWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286
Query: 62 SARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTP 121
+ QTREH +D ++WS++R+ EI++ ++
Sbjct: 287 DSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLD--LMSWSEDRFQEIKNIVSD 344
Query: 122 FL-KASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDP-N 179
FL K G+ +V F+PIS + G N+ + L W+ GP L ALD++ + P P
Sbjct: 345 FLIKMVGFKT-SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL-VPPEKPYR 402
Query: 180 GPFRMPIIDKFKDMGTV-VMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238
P R+ I D ++ +V V G+VE+G+V+ L + ++ V N +R++ P
Sbjct: 403 KPLRLSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYV------KNVIRNSDP 456
Query: 239 -------GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAG 291
G+ + ++L+ IE + G +LS+ PV V F+A++Q ++ + +G
Sbjct: 457 SSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDI--HGPILSG 514
Query: 292 YKAVLHIHAVVEEC--EIVELLHQIDXXXXXXXXXXXXXX-XNGAIVVCRIQVNNSICTE 348
VLH+ V +IV + ++ +G +C +
Sbjct: 515 STLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAE-------- 566
Query: 349 KFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ LGRF LR G TVA G V EL
Sbjct: 567 ---ECPALGRFILRRSGDTVAAGIVKEL 591
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 182/399 (45%), Gaps = 28/399 (7%)
Query: 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLV 60
A+IMD EER +G TV + +HF T FTI+DAPGH+ +VPN I G SQAD+ +L
Sbjct: 82 FAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILC 141
Query: 61 ISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMT 120
+ QT+EH++ MD+ V+WS++R++EI+SK+
Sbjct: 142 VDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWSQQRFEEIKSKLL 199
Query: 121 PFLKASGYNVKKDVQFLPISGLMGLNM-KTRVDKSLCPWWNGPCLFEALDRIEITPRDPN 179
P+L G+ + ++ ++PISG G + K + W+NGP L L+ N
Sbjct: 200 PYLVDIGF-FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKEN 258
Query: 180 ------GPFRMPIIDKFKDMGT-----VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC 228
PF +++ T +V GK+ESGS++ G+SL + P++ V I
Sbjct: 259 EGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV 318
Query: 229 DDNRVRH--------AGPGENLRIRLSGIEEEDILSGFVLSSV-AKPVAAVTEFIAQLQI 279
+ + A G+ + ++L EDI +G + +SV + + F+ +L
Sbjct: 319 GSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTT 378
Query: 280 LELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXX--XXXNGAIVVC 337
++ N G +L I + I L+ ID + +
Sbjct: 379 FDM--NRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIE 436
Query: 338 RIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
I+V I + +LGR LR +G+T+A GK++E+
Sbjct: 437 LIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEI 475
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 183/399 (45%), Gaps = 28/399 (7%)
Query: 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLV 60
A+IMD EER +G TV + +HF T FTI+DAPGH+ +VPN I G SQAD+ +L
Sbjct: 216 FAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILC 275
Query: 61 ISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMT 120
+ QT+EH++ MD+ V+WS++R++EI+SK+
Sbjct: 276 VDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWSQQRFEEIKSKLL 333
Query: 121 PFLKASGYNVKKDVQFLPISGLMGLNM-KTRVDKSLCPWWNGPCLFEALDRIEITPRDPN 179
P+L G+ + ++ ++PISG G + K + W+NGP L L+ N
Sbjct: 334 PYLVDIGF-FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKEN 392
Query: 180 ------GPFRMPIID-----KFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC 228
PF +++ K + +V GK+ESGS++ G+SL + P++ V I
Sbjct: 393 EGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV 452
Query: 229 DDNRVRH--------AGPGENLRIRLSGIEEEDILSGFVLSSV-AKPVAAVTEFIAQLQI 279
+ + A G+ + ++L EDI +G + +SV + + F+ +L
Sbjct: 453 GSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTT 512
Query: 280 LELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXX--XXXNGAIVVC 337
++ N G +L I + I L+ ID + +
Sbjct: 513 FDM--NRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIE 570
Query: 338 RIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
I+V I + +LGR LR +G+T+A GK++E+
Sbjct: 571 LIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEI 609
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 178/399 (44%), Gaps = 28/399 (7%)
Query: 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLV 60
A+I D EER +G TV + +HF T FTI+DAPGH+ +VPN I G SQAD +L
Sbjct: 82 FAWIXDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILC 141
Query: 61 ISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMT 120
+ QT+EH + D+ V+WS++R++EI+SK+
Sbjct: 142 VDCSTNAFESGFDLDGQTKEHXLLASSLGIHNLIIAXNKXDN--VDWSQQRFEEIKSKLL 199
Query: 121 PFLKASGYNVKKDVQFLPISGLMGLNM-KTRVDKSLCPWWNGPCLFEALDRIEITPRDPN 179
P+L G+ + ++ ++PISG G + K + W+NGP L L+ N
Sbjct: 200 PYLVDIGF-FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKEN 258
Query: 180 ------GPFRMPIIDKFKDMGT-----VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC 228
PF +++ T +V GK+ESGS++ G+SL + P++ V I
Sbjct: 259 EGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV 318
Query: 229 DDNRVRH--------AGPGENLRIRLSGIEEEDILSGFVLSSV-AKPVAAVTEFIAQLQI 279
+ + A G+ + ++L EDI +G + +SV + + F+ +L
Sbjct: 319 GSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTT 378
Query: 280 LELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXX--XXXNGAIVVC 337
+ N G +L I + I L+ ID + +
Sbjct: 379 FDX--NRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIE 436
Query: 338 RIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
I+V I + +LGR LR +G+T+A GK++E+
Sbjct: 437 LIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEI 475
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 120/264 (45%), Gaps = 20/264 (7%)
Query: 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLV 60
+A ++D + ER +G T++V +F T +F I D PGH+ Y N +GAS D+ +++
Sbjct: 75 LALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIIL 134
Query: 61 ISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMT 120
+ AR QTR H D +N ER ES
Sbjct: 135 VDAR-------YGVQTQTRRHSYIASLLGIKHIVVAINKXD---LNGFDERV--FESIKA 182
Query: 121 PFLK-ASGYNVKKDVQ-FLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDP 178
+LK A G K F+P S L G N+ + ++S PW+ G L E L+ +EI
Sbjct: 183 DYLKFAEGIAFKPTTXAFVPXSALKGDNVVNKSERS--PWYAGQSLXEILETVEIASDRN 240
Query: 179 NGPFRMPI--IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHA 236
R P+ +++ G + SG V +GD ++V+P+ +V +I + + A
Sbjct: 241 YTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQA 300
Query: 237 GPGENLRIRLSGIEEEDILSGFVL 260
GPG+ + L+ +E DI G +L
Sbjct: 301 GPGQ--AVTLTXEDEIDISRGDLL 322
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 167/393 (42%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 109 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KTR + W W L +A+D T
Sbjct: 160 Q--YEFPGDEVPVIRGSALLALEQMHRNPKTR--RGENEWVDKIWE---LLDAIDEYIPT 212
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 213 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L+ +
Sbjct: 273 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGG 329
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F +GY+ + + +V+L ++ G V +++
Sbjct: 330 RHTGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIK 376
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 377 PVALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 167/393 (42%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 109 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KTR + W W L +A+D T
Sbjct: 160 Q--YEFPGDEVPVIRGSALLALEQMHRNPKTR--RGENEWVDKIWE---LLDAIDEYIPT 212
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 213 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L+ +
Sbjct: 273 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGG 329
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F +GY+ + + +V+L ++ G V +++
Sbjct: 330 RHTGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIK 376
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 377 PVALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 167/393 (42%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 109 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KTR + W W L +A+D T
Sbjct: 160 Q--YEFPGDEVPVIRGSALLALEQMHRNPKTR--RGENEWVDKIWE---LLDAIDEYIPT 212
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 213 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L+ +
Sbjct: 273 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGG 329
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F +GY+ + + +V+L ++ G V +++
Sbjct: 330 RHTGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIK 376
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 377 PVALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 167/393 (42%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 109 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KTR + W W L +A+D T
Sbjct: 160 Q--YEFPGDEVPVIRGSALLALEQMHRNPKTR--RGENEWVDKIWE---LLDAIDEYIPT 212
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 213 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L+ +
Sbjct: 273 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGG 329
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F +GY+ + + +V+L ++ G V +++
Sbjct: 330 RHTGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIK 376
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 377 PVALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 167/393 (42%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 109 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KTR + W W L +A+D T
Sbjct: 160 Q--YEFPGDEVPVIRGSALLALEQMHRNPKTR--RGENEWVDKIWE---LLDAIDEYIPT 212
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 213 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L+ +
Sbjct: 273 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGG 329
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F +GY+ + + +V+L ++ G V +++
Sbjct: 330 RHTGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIK 376
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 377 PVALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 167/393 (42%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 109 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KTR + W W L +A+D T
Sbjct: 160 Q--YEFPGDEVPVIRGSALLALEQMHRNPKTR--RGENEWVDKIWE---LLDAIDEYIPT 212
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 213 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L+ +
Sbjct: 273 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGG 329
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F +GY+ + + +V+L ++ G V +++
Sbjct: 330 RHTGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIK 376
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 377 PVALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 167/393 (42%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 51 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 109
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 110 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 160
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KTR + W W L +A+D T
Sbjct: 161 Q--YEFPGDEVPVIRGSALLALEQMHRNPKTR--RGENEWVDKIWE---LLDAIDEYIPT 213
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 214 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEM 273
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L+ +
Sbjct: 274 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGG 330
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F +GY+ + + +V+L ++ G V +++
Sbjct: 331 RHTGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIK 377
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 378 PVALEEGL------RFAIREGGRTVGAGVVTKI 404
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 165/393 (41%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 109 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KT+ + W W L +A+D T
Sbjct: 160 Q--YEFPGDEVPVIRGSALLALEEMHKNPKTK--RGENEWVDKIWE---LLDAIDEYIPT 212
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 213 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + IL+ +
Sbjct: 273 HRKTLQEGIAGDNVGLLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYILKKEEGG 329
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F GY+ + + +V L ++ G V +++
Sbjct: 330 RHTGFFTGYRPQFYFRT-TDVTGVVRLPQGVEMVMP------------GDNVTFTVELIK 376
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 377 PVALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 165/393 (41%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 109 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KT+ + W W L +A+D T
Sbjct: 160 Q--YEFPGDEVPVIRGSALLALEEMHKNPKTK--RGENEWVDKIWE---LLDAIDEYIPT 212
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 213 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + IL+ +
Sbjct: 273 HRKTLQEGIAGDNVGLLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYILKKEEGG 329
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F GY+ + + +V L ++ G V +++
Sbjct: 330 RHTGFFTGYRPQFYFRT-TDVTGVVRLPQGVEMVMP------------GDNVTFTVELIK 376
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 377 PVALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 166/393 (42%), Gaps = 60/393 (15%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + E D +E ++ L
Sbjct: 109 ------ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDRIEIT 174
Y D V + S L+ L N KT+ + W W L +A+D T
Sbjct: 160 Q--YEFPGDEVPVIRGSALLALEEMHKNPKTK--RGENEWVDKIWE---LLDAIDEYIPT 212
Query: 175 P-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYC 228
P RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 213 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQILELLDNA 286
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L+ +
Sbjct: 273 HRKTLQEGIAGDNVGLLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGG 329
Query: 287 I---FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNN 343
F +GY+ + + +V L ++ G V +++
Sbjct: 330 RHTGFFSGYRPQFYFRT-TDVTGVVRLPQGVEMVMP------------GDNVTFTVELIK 376
Query: 344 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
+ E+ RF +R G+TV G VT++
Sbjct: 377 PVALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 162/391 (41%), Gaps = 56/391 (14%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ +ET ++ +D GH Y+ NMI+GA+Q D +LV+SA
Sbjct: 50 IDKAREERARGITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSA- 108
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ +D + +E D +E ++ L
Sbjct: 109 ------ADGRMRQTREHILLARQVGVRYIVVFMNKVD---MVDDRELLDLVEMEVRDLLN 159
Query: 125 ASGYNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDR-IEI 173
Y + D V+ + S L+ L N KT+ + W W L +A+D I
Sbjct: 160 Q--YEFRGDEVRVIRGSALLALEEMHKNRKTK--RGENEWVDKIWE---LLDAIDEYIRT 212
Query: 174 TPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVK---VLAIYC 228
RD + F M + D F GTV G++E G V+ GD + ++ + + V +
Sbjct: 213 RVRDVDKRFLMRVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLARETRKTVVTGVEM 272
Query: 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAI- 287
++ G+N+ + L G+ E++ G VL+ + T+F A + IL+ +
Sbjct: 273 HRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKRG-SITRHTKFEASVYILKKEEGGRH 331
Query: 288 --FTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 345
F GY+ + + +V L ++ G V +++ +
Sbjct: 332 TGFFTGYRRQFYFRT-TDVTGVVRLRQGVE------------MVMRGDNVTFTVELIKRV 378
Query: 346 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 123/276 (44%), Gaps = 27/276 (9%)
Query: 10 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXX 69
E + +G T+++G + F+ E R T++DAPGH + ++S A D+ ++V+ A+
Sbjct: 53 ESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT 112
Query: 70 XXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYN 129
QT EH++ + N E E M L+++ +N
Sbjct: 113 -------QTGEHMLILDHFNIPIIVVIT-----KSDNAGTEEIKRTEMIMKSILQST-HN 159
Query: 130 VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK 189
+K + +PIS G + + + L+ EI R+ F+MP+
Sbjct: 160 LK-NSSIIPISAKTGFGVDELKN----------LIITTLNNAEII-RNTESYFKMPLDHA 207
Query: 190 F--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLS 247
F K GTVV G + G V+ GD L V+P KV +I V A G+ + + +
Sbjct: 208 FPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQ 267
Query: 248 GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL 283
G++ + I G +L+S + V + +A+++I ++
Sbjct: 268 GVDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDIF 303
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 111/267 (41%), Gaps = 23/267 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ + T + D PGH YV NMI+G + D +LV++A
Sbjct: 41 IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAN 100
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ D E + +E ++ L
Sbjct: 101 -------DGPMPQTREHLLLARQIGVEHVVVYVNKAD---AVQDSEMVELVELEIRELLT 150
Query: 125 ASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFR 183
GY ++ + S L L + D L + L +A+D I + RD PF
Sbjct: 151 EFGYK-GEETPIIVGSALCALEQR---DPELG-LKSVQKLLDAVDTYIPVPTRDLEKPFL 205
Query: 184 MPI--IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVK--VLAIYCDDNRVRHAGPG 239
+P+ + GTVV G +E G +++GD + + ++ V I + A G
Sbjct: 206 LPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAG 265
Query: 240 ENLRIRLSGIEEEDILSGFVLSSVAKP 266
+NL + G++ ED+ G V+ AKP
Sbjct: 266 DNLGALVRGLKREDLRRGLVM---AKP 289
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 110/267 (41%), Gaps = 23/267 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EER +G T+ + T + D PGH YV N I+G + D +LV++A
Sbjct: 52 IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAAN 111
Query: 65 XXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK 124
QTREH++ D E + +E ++ L
Sbjct: 112 -------DGPXPQTREHLLLARQIGVEHVVVYVNKAD---AVQDSEXVELVELEIRELLT 161
Query: 125 ASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFR 183
GY ++ + S L L + D L + L +A+D I + RD PF
Sbjct: 162 EFGYK-GEETPIIVGSALCALEQR---DPELG-LKSVQKLLDAVDTYIPVPTRDLEKPFL 216
Query: 184 MPI--IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVK--VLAIYCDDNRVRHAGPG 239
+P+ + GTVV G +E G +++GD + + ++ V I + A G
Sbjct: 217 LPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEXFHKSLDRAEAG 276
Query: 240 ENLRIRLSGIEEEDILSGFVLSSVAKP 266
+NL + G++ ED+ G V AKP
Sbjct: 277 DNLGALVRGLKREDLRRGLV---XAKP 300
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 61/246 (24%)
Query: 6 DTNEEERIKGKTVEVGRAH----------------------FETE-TTRFTILDAPGHKS 42
DT+ EE +G T+++G A ETE R + +DAPGH++
Sbjct: 36 DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA 95
Query: 43 YVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDD 102
+ M++GAS D +LVI+A QTREH+M ++
Sbjct: 96 LMTTMLAGASLMDGAILVIAAN------EPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149
Query: 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGP 162
+ E Y +I+ F++ + V ++ +PIS L G N+
Sbjct: 150 VDKEKALENYRQIKE----FIEGT---VAENAPIIPISALHGANIDV------------- 189
Query: 163 CLFEALDRIEITP-RDPNGPFRMPIIDKF----------KDMGTVVMGKVESGSVREGDS 211
L +A++ TP RDPN P +M ++ F K +G V+ G + G ++ GD
Sbjct: 190 -LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDE 248
Query: 212 LLVMPN 217
+ + P
Sbjct: 249 IEIRPG 254
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 61/246 (24%)
Query: 6 DTNEEERIKGKTVEVGRAH----------------------FETE-TTRFTILDAPGHKS 42
DT+ EE +G T+++G A ETE R + +DAPGH++
Sbjct: 36 DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA 95
Query: 43 YVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDD 102
+ M++GAS D +LVI+A QTREH+M ++
Sbjct: 96 LMTTMLAGASLMDGAILVIAAN------EPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149
Query: 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGP 162
+ E Y +I+ F++ + V ++ +PIS L G N+
Sbjct: 150 VDKEKALENYRQIKE----FIEGT---VAENAPIIPISALHGANIDV------------- 189
Query: 163 CLFEALDRIEITP-RDPNGPFRMPIIDKF----------KDMGTVVMGKVESGSVREGDS 211
L +A++ TP RDPN P +M ++ F K +G V+ G + G ++ GD
Sbjct: 190 -LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDE 248
Query: 212 LLVMPN 217
+ + P
Sbjct: 249 IEIRPG 254
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA- 392
Query: 65 XXXXXXXXXXXXQTREHVM 83
QTREH++
Sbjct: 393 ------TDGPMPQTREHIL 405
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 22/137 (16%)
Query: 176 RDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAI 226
R + PF +PI D F GTVV G+VE G ++ G+ + ++ K V++
Sbjct: 489 RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRK 548
Query: 227 YCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---E 281
D+ R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E
Sbjct: 549 LLDEGRA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDE 600
Query: 282 LLDNAIFTAGYKAVLHI 298
+ F GY+ +
Sbjct: 601 GGRHTPFFKGYRPQFYF 617
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 41 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA- 99
Query: 65 XXXXXXXXXXXXQTREHVM 83
QTREH++
Sbjct: 100 ------TDGPMPQTREHIL 112
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 231
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 201 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 260
Query: 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 286
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 261 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 312
Query: 287 IFTAGYKAVLH-----IHAVVEECEIVELL 311
F GY+ + + +E E VE++
Sbjct: 313 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 342
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA- 107
Query: 65 XXXXXXXXXXXXQTREHVM 83
QTREH++
Sbjct: 108 ------TDGPMPQTREHIL 120
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 231
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 209 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 268
Query: 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 286
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 269 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 320
Query: 287 IFTAGYKAVLH-----IHAVVEECEIVELL 311
F GY+ + + +E E VE++
Sbjct: 321 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 350
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA- 108
Query: 65 XXXXXXXXXXXXQTREHVM 83
QTREH++
Sbjct: 109 ------TDGPMPQTREHIL 121
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 231
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 210 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 269
Query: 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 286
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 270 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 321
Query: 287 IFTAGYKAVLH-----IHAVVEECEIVELL 311
F GY+ + + +E E VE++
Sbjct: 322 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 351
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA- 108
Query: 65 XXXXXXXXXXXXQTREHVM 83
QTREH++
Sbjct: 109 ------TDGPMPQTREHIL 121
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 231
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 210 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 269
Query: 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 286
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 270 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 321
Query: 287 IFTAGYKAVLH-----IHAVVEECEIVELL 311
F GY+ + + +E E VE++
Sbjct: 322 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 351
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA- 107
Query: 65 XXXXXXXXXXXXQTREHVM 83
QTREH++
Sbjct: 108 ------TDGPMPQTREHIL 120
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 231
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 209 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 268
Query: 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 286
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 269 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 320
Query: 287 IFTAGYKAVLH-----IHAVVEECEIVELL 311
F GY+ + + +E E VE++
Sbjct: 321 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 350
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA- 107
Query: 65 XXXXXXXXXXXXQTREHVM 83
QTREH++
Sbjct: 108 ------TDGPMPQTREHIL 120
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 231
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 209 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 268
Query: 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 286
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 269 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 320
Query: 287 IFTAGYKAVLH-----IHAVVEECEIVELL 311
F GY+ + + +E E VE++
Sbjct: 321 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 350
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
+D EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA- 392
Query: 65 XXXXXXXXXXXXQTREHVM 83
QTREH++
Sbjct: 393 ------TDGPMPQTREHIL 405
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 19/116 (16%)
Query: 176 RDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAI 226
R + PF +PI D F GTVV G+VE G ++ G+ + ++ K V++
Sbjct: 489 RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRK 548
Query: 227 YCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL 280
D+ R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL
Sbjct: 549 LLDEGRA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYIL 596
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 61/246 (24%)
Query: 6 DTNEEERIKGKTVEVGRAH----------------------FETE-TTRFTILDAPGHKS 42
DT+ EE +G T+++G A ETE R + +D+PGH++
Sbjct: 37 DTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEA 96
Query: 43 YVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDD 102
+ M++GAS D +LVI+A QTREH+M ++
Sbjct: 97 LMTTMLAGASLMDGAILVIAAN------EPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 150
Query: 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGP 162
+ E Y +I+ F+K + V ++ +PIS L G N+
Sbjct: 151 VDKEKALENYRQIKE----FIKGT---VAENAPIIPISALHGANIDV------------- 190
Query: 163 CLFEALDRIEITP-RDPNGPFRMPIIDKF----------KDMGTVVMGKVESGSVREGDS 211
L +A++ TP RD N P +M ++ F K +G V+ G + G ++ GD
Sbjct: 191 -LVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDE 249
Query: 212 LLVMPN 217
+ + P
Sbjct: 250 IEIRPG 255
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXX 73
+G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 44 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA-------TDG 96
Query: 74 XXXQTREHVM 83
QTREH++
Sbjct: 97 PMPQTREHIL 106
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 231
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 195 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 254
Query: 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 286
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 255 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 306
Query: 287 IFTAGYKAVLH-----IHAVVEECEIVELL 311
F GY+ + + +E E VE++
Sbjct: 307 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 336
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 98/246 (39%), Gaps = 61/246 (24%)
Query: 6 DTNEEERIKGKTVEVGRAH----------------------FETE-TTRFTILDAPGHKS 42
DT+ EE +G T+++G A ETE R + +DAPGH++
Sbjct: 36 DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA 95
Query: 43 YVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDD 102
++GAS D +LVI+A QTREH+ ++
Sbjct: 96 LXTTXLAGASLXDGAILVIAAN------EPCPRPQTREHLXALQIIGQKNIIIAQNKIEL 149
Query: 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGP 162
+ E Y +I+ F++ + V ++ +PIS L G N+
Sbjct: 150 VDKEKALENYRQIKE----FIEGT---VAENAPIIPISALHGANIDV------------- 189
Query: 163 CLFEALDRIEITP-RDPNGPFRMPIIDKF----------KDMGTVVMGKVESGSVREGDS 211
L +A++ TP RDPN P + ++ F K +G V+ G + G ++ GD
Sbjct: 190 -LVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDE 248
Query: 212 LLVMPN 217
+ + P
Sbjct: 249 IEIRPG 254
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 15 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXX 74
G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA-------TDGP 53
Query: 75 XXQTREHVM 83
QTREH++
Sbjct: 54 MPQTREHIL 62
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 231
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 151 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 210
Query: 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 286
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 211 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 262
Query: 287 IFTAGYKAVLH-----IHAVVEECEIVELL 311
F GY+ + + +E E VE++
Sbjct: 263 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 292
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 15 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXX 74
G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAA-------TDGP 53
Query: 75 XXQTREHVM 83
QTREH++
Sbjct: 54 MPQTREHIL 62
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 181 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 231
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 151 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 210
Query: 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 286
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 211 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 262
Query: 287 IFTAGYKAVLH-----IHAVVEECEIVELL 311
F GY+ + + +E E VE++
Sbjct: 263 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 292
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 50/232 (21%)
Query: 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 90
R + +D+PGH++ + M+SGAS D +LVI+A QT+EH+M
Sbjct: 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAAN------EPCPQPQTKEHLMALEILGI 135
Query: 91 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150
+D ++E Y++I+ F+K + + ++ +PIS N+
Sbjct: 136 DKIIIVQNKIDLVDEKQAEENYEQIKE----FVKGT---IAENAPIIPISAHHEANIDV- 187
Query: 151 VDKSLCPWWNGPCLFEALDRIEITP-RDPNGPFRMPIIDKF---------KDM-GTVVMG 199
L +A+ TP RDP+ RM + F KD+ G V+ G
Sbjct: 188 -------------LLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGG 234
Query: 200 KVESGSVREGDSLLVMP-------NKA-----QVKVLAIYCDDNRVRHAGPG 239
+ G + GD + + P NK K++++ + +R A PG
Sbjct: 235 AIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPG 286
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64
ER +G T++ G F+ E T+ I+D PGH ++ + S D +L+ISA+
Sbjct: 48 ERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAK 101
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 15 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 63
G T +G H ETE T LD PGH ++ GA DI VLV++A
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAA 84
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 90
R + +DAPGH+ + M+SGA+ D +LV++A QTREH +
Sbjct: 76 RISFIDAPGHEVLMATMLSGAALMDGAILVVAAN------EPFPQPQTREHFVALGIIGV 129
Query: 91 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150
+D + + +Y +I+ F K + ++V +P+S L +N+ +
Sbjct: 130 KNLIIVQNKVDVVSKEEALSQYRQIKQ----FTKGTW---AENVPIIPVSALHKINIDSL 182
Query: 151 VD 152
++
Sbjct: 183 IE 184
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 90
R + +DAPGH+ + M+SGA+ D +LV++A QTREH +
Sbjct: 82 RISFIDAPGHEVLMATMLSGAALMDGAILVVAAN------EPFPQPQTREHFVALGIIGV 135
Query: 91 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150
+D + + +Y +I+ F K + ++V +P+S L +N+ +
Sbjct: 136 KNLIIVQNKVDVVSKEEALSQYRQIKQ----FTKGTW---AENVPIIPVSALHKINIDSL 188
Query: 151 VD 152
++
Sbjct: 189 IE 190
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 90
R + +DAPGH+ + M+SGA+ D +LV++A QTREH +
Sbjct: 87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAAN------EPFPQPQTREHFVALGIIGV 140
Query: 91 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150
+D + + +Y +I+ F K + ++V +P+S L +N+ +
Sbjct: 141 KNLIIVQNKVDVVSKEEALSQYRQIKQ----FTKGTW---AENVPIIPVSALHKINIDSL 193
Query: 151 VD 152
++
Sbjct: 194 IE 195
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 90
R + +DAPGH+ + M+SGA+ D +LV++A QTREH +
Sbjct: 88 RISFIDAPGHEVLMATMLSGAALMDGAILVVAAN------EPFPQPQTREHFVALGIIGV 141
Query: 91 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150
+D + + +Y +I+ F K + ++V +P+S L +N+ +
Sbjct: 142 KNLIIVQNKVDVVSKEEALSQYRQIKQ----FTKGTW---AENVPIIPVSALHKINIDSL 194
Query: 151 VD 152
++
Sbjct: 195 IE 196
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 166 EALDRIEITPRDPNG-PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVK 222
E ++IE + N P R+ I F G VV+G V+ G ++ D + P ++
Sbjct: 176 EVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIE 235
Query: 223 VLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 261
+ +I D + A G + RL ++ +DI GF++S
Sbjct: 236 IRSIQSHDVDIDSAPAGTRVGXRLKNVQAKDIERGFIIS 274
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 10 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 63
E+ G T +G + T LD PGH+++ GA DI +LV++A
Sbjct: 35 EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAA 88
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 41/203 (20%)
Query: 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 90
+ T LD PGH ++ G DI +LV++A QT E +
Sbjct: 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAA-------DDGVMKQTVESIQHAK---- 101
Query: 91 XXXXXXXXXMDDHT-VNWSKERYDEIESKMTPFLKA-SGYNV-----KKDVQFLPISGLM 143
D H + + + D+ E+ K Y+V DVQ + +S L
Sbjct: 102 ----------DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALT 151
Query: 144 GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGT--VVMGKV 201
G NM + ++ L E L+ DP G +I+ F D G V +
Sbjct: 152 GENMMALAEATI-------ALAEMLE----LKADPTGAVEGTVIESFTDKGRGPVTTAII 200
Query: 202 ESGSVREGDSLLVMPNKAQVKVL 224
+ G++R+G L+ + A+V+++
Sbjct: 201 QRGTLRKGSILVAGKSWAKVRLM 223
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 6 DTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 63
D E ++ TV G A R +LDAPG+ +V + AD ++ +SA
Sbjct: 50 DYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSA 107
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 198 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 258 FVLSSVAKPVAAVTEFIAQLQILELL 283
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 198 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 258 FVLSSVAKPVAAVTEFIAQLQILELL 283
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 198 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 26 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 77
Query: 258 FVLSSVAKPVAAVTEFIAQLQILELL 283
F V + + V++ L ++EL+
Sbjct: 78 FTCHHVVRLLGVVSKGQPTLVVMELM 103
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 198 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 24 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 75
Query: 258 FVLSSVAKPVAAVTEFIAQLQILELL 283
F V + + V++ L ++EL+
Sbjct: 76 FTCHHVVRLLGVVSKGQPTLVVMELM 101
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 198 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 258 FVLSSVAKPVAAVTEFIAQLQILELL 283
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 198 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 258 FVLSSVAKPVAAVTEFIAQLQILELL 283
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 198 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 22 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 73
Query: 258 FVLSSVAKPVAAVTEFIAQLQILELL 283
F V + + V++ L ++EL+
Sbjct: 74 FTCHHVVRLLGVVSKGQPTLVVMELM 99
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 198 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 258 FVLSSVAKPVAAVTEFIAQLQILELL 283
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G
Trapped With A Gtp Analogue
Length = 691
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 43
A MD E+ER +G T+ + R I+DAPGH +
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 90
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 43
A MD E+ER +G T+ + R I+DAPGH +
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 90
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 43
A MD E+ER +G T+ + R I+DAPGH +
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,620,280
Number of Sequences: 62578
Number of extensions: 347734
Number of successful extensions: 1097
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 100
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)