Query 016750
Match_columns 383
No_of_seqs 316 out of 3100
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 1.7E-86 3.6E-91 611.6 36.9 370 1-378 56-428 (428)
2 PLN00043 elongation factor 1-a 100.0 2.6E-78 5.6E-83 590.1 42.6 375 1-381 56-434 (447)
3 PTZ00141 elongation factor 1- 100.0 2.3E-77 4.9E-82 583.9 44.3 375 1-381 56-434 (446)
4 KOG0459 Polypeptide release fa 100.0 2.2E-75 4.7E-80 531.4 30.8 373 1-378 128-501 (501)
5 KOG0458 Elongation factor 1 al 100.0 3.1E-74 6.7E-79 547.5 30.5 372 1-377 226-602 (603)
6 PRK12317 elongation factor 1-a 100.0 2.7E-72 5.8E-77 550.0 43.2 364 1-379 55-423 (425)
7 TIGR00483 EF-1_alpha translati 100.0 1.6E-71 3.5E-76 544.3 43.2 367 1-379 56-425 (426)
8 COG2895 CysN GTPases - Sulfate 100.0 9.7E-71 2.1E-75 494.2 33.0 357 1-378 57-417 (431)
9 TIGR02034 CysN sulfate adenyly 100.0 8.5E-69 1.8E-73 520.1 40.2 352 1-373 51-406 (406)
10 PRK05124 cysN sulfate adenylyl 100.0 1.6E-68 3.5E-73 525.4 42.2 357 1-377 78-438 (474)
11 PRK05506 bifunctional sulfate 100.0 7.2E-65 1.6E-69 518.7 42.8 358 1-379 75-436 (632)
12 PLN03126 Elongation factor Tu; 100.0 1.5E-61 3.3E-66 473.7 39.7 348 4-377 118-477 (478)
13 CHL00071 tufA elongation facto 100.0 3.4E-61 7.4E-66 467.7 41.4 349 4-378 49-409 (409)
14 PRK12735 elongation factor Tu; 100.0 5.2E-61 1.1E-65 464.6 40.6 339 3-377 48-395 (396)
15 PRK00049 elongation factor Tu; 100.0 6E-61 1.3E-65 463.8 40.9 338 4-377 49-395 (396)
16 PRK12736 elongation factor Tu; 100.0 1.6E-60 3.6E-65 460.8 40.4 337 3-377 48-393 (394)
17 PLN03127 Elongation factor Tu; 100.0 4E-60 8.6E-65 461.7 40.5 336 4-377 98-446 (447)
18 TIGR00485 EF-Tu translation el 100.0 8.9E-60 1.9E-64 456.4 40.9 338 2-377 47-393 (394)
19 COG0050 TufB GTPases - transla 100.0 3.7E-56 8E-61 390.7 29.1 336 5-378 50-394 (394)
20 KOG0460 Mitochondrial translat 100.0 5.8E-57 1.3E-61 402.7 22.0 337 5-378 92-438 (449)
21 PTZ00327 eukaryotic translatio 100.0 1.2E-52 2.5E-57 408.3 37.0 316 5-375 59-451 (460)
22 PRK10512 selenocysteinyl-tRNA- 100.0 6.3E-52 1.4E-56 417.8 35.7 315 5-381 25-345 (614)
23 COG3276 SelB Selenocysteine-sp 100.0 5.3E-49 1.1E-53 365.8 29.8 316 3-380 23-343 (447)
24 PRK04000 translation initiatio 100.0 3E-48 6.5E-53 376.4 36.3 315 5-374 34-411 (411)
25 TIGR03680 eif2g_arch translati 100.0 5.6E-48 1.2E-52 374.8 36.7 314 5-373 29-405 (406)
26 TIGR00475 selB selenocysteine- 100.0 1.2E-47 2.5E-52 386.0 36.5 311 5-376 25-338 (581)
27 COG5258 GTPBP1 GTPase [General 100.0 4E-46 8.7E-51 338.0 30.7 322 4-376 152-526 (527)
28 KOG0463 GTP-binding protein GP 100.0 2.5E-40 5.3E-45 299.5 22.2 304 29-382 218-552 (641)
29 COG5257 GCD11 Translation init 100.0 7.3E-38 1.6E-42 278.7 30.8 317 4-375 34-413 (415)
30 KOG1143 Predicted translation 100.0 3.4E-37 7.5E-42 278.9 25.8 325 7-380 205-586 (591)
31 KOG0052 Translation elongation 100.0 1.5E-38 3.2E-43 292.7 10.8 321 1-382 53-377 (391)
32 TIGR01394 TypA_BipA GTP-bindin 100.0 2.6E-35 5.6E-40 296.0 26.0 243 3-265 37-289 (594)
33 KOG0461 Selenocysteine-specifi 100.0 9.6E-35 2.1E-39 260.6 19.3 318 5-352 36-381 (522)
34 PRK10218 GTP-binding protein; 100.0 6.4E-33 1.4E-37 278.3 24.6 240 3-264 41-292 (607)
35 TIGR01393 lepA GTP-binding pro 100.0 2E-32 4.2E-37 275.9 25.3 231 2-266 37-279 (595)
36 PRK05433 GTP-binding protein L 100.0 2E-32 4.2E-37 276.2 25.1 230 2-265 41-282 (600)
37 COG1217 TypA Predicted membran 100.0 2.8E-32 6E-37 253.6 23.2 242 3-265 41-293 (603)
38 KOG0462 Elongation factor-type 100.0 7.6E-33 1.7E-37 262.0 17.8 229 4-264 96-332 (650)
39 COG0481 LepA Membrane GTPase L 100.0 7.1E-32 1.5E-36 251.6 21.1 229 3-264 44-283 (603)
40 cd01883 EF1_alpha Eukaryotic e 100.0 1.2E-30 2.6E-35 233.5 17.5 171 1-174 48-218 (219)
41 cd04166 CysN_ATPS CysN_ATPS su 100.0 2.7E-29 5.8E-34 223.0 16.8 160 1-174 48-207 (208)
42 PRK07560 elongation factor EF- 100.0 3.8E-28 8.2E-33 251.8 24.9 250 2-264 55-375 (731)
43 PRK00007 elongation factor G; 100.0 4.7E-28 1E-32 249.7 23.8 241 2-264 47-394 (693)
44 cd01884 EF_Tu EF-Tu subfamily. 100.0 1.1E-28 2.4E-33 216.0 15.6 155 3-173 38-193 (195)
45 PRK00741 prfC peptide chain re 100.0 1.8E-27 3.9E-32 236.5 23.9 248 4-282 53-403 (526)
46 PRK12739 elongation factor G; 100.0 1.1E-27 2.5E-32 247.1 23.1 241 2-264 45-391 (691)
47 COG4108 PrfC Peptide chain rel 100.0 8.8E-30 1.9E-34 235.7 6.3 266 4-296 55-419 (528)
48 COG0480 FusA Translation elong 100.0 2.2E-27 4.7E-32 239.8 23.8 245 3-264 48-392 (697)
49 PRK05306 infB translation init 100.0 4.1E-27 8.8E-32 241.4 23.6 219 10-262 317-542 (787)
50 TIGR00487 IF-2 translation ini 100.0 6.8E-27 1.5E-31 234.6 23.7 218 10-261 114-339 (587)
51 TIGR00503 prfC peptide chain r 100.0 1.1E-26 2.4E-31 230.9 23.5 248 4-282 54-404 (527)
52 KOG0466 Translation initiation 100.0 2.8E-28 6E-33 215.9 10.5 319 6-375 64-458 (466)
53 TIGR00484 EF-G translation elo 99.9 5E-26 1.1E-30 235.0 26.1 241 2-264 47-392 (689)
54 PRK13351 elongation factor G; 99.9 8.2E-26 1.8E-30 233.9 25.0 231 3-264 46-390 (687)
55 PRK12740 elongation factor G; 99.9 9.4E-26 2E-30 233.1 24.8 232 3-264 33-373 (668)
56 TIGR00490 aEF-2 translation el 99.9 4.4E-25 9.6E-30 228.4 22.0 249 3-264 55-374 (720)
57 CHL00189 infB translation init 99.9 7.3E-25 1.6E-29 222.9 20.7 221 10-263 271-501 (742)
58 KOG0465 Mitochondrial elongati 99.9 3.8E-25 8.3E-30 212.0 16.9 230 4-264 78-421 (721)
59 COG0532 InfB Translation initi 99.9 4.8E-24 1E-28 204.3 19.7 205 14-250 36-249 (509)
60 PRK14845 translation initiatio 99.9 7.6E-24 1.6E-28 221.6 22.8 228 9-261 487-781 (1049)
61 KOG1145 Mitochondrial translat 99.9 1.4E-24 3.1E-29 206.0 15.1 201 14-244 184-391 (683)
62 PRK04004 translation initiatio 99.9 3.2E-23 6.9E-28 208.7 23.4 207 32-259 73-324 (586)
63 PLN00116 translation elongatio 99.9 1.6E-23 3.4E-28 219.8 21.5 251 2-264 54-471 (843)
64 PF00009 GTP_EFTU: Elongation 99.9 2.7E-24 5.8E-29 188.0 13.0 135 3-150 41-178 (188)
65 TIGR00491 aIF-2 translation in 99.9 5.2E-23 1.1E-27 206.3 22.7 229 11-260 32-323 (590)
66 PTZ00416 elongation factor 2; 99.9 3.9E-23 8.5E-28 216.5 22.3 115 2-124 54-184 (836)
67 cd03704 eRF3c_III This family 99.9 6.5E-23 1.4E-27 162.4 12.8 107 269-376 2-108 (108)
68 cd04093 HBS1_C HBS1_C: this fa 99.9 1.9E-22 4E-27 159.6 14.5 105 269-376 2-107 (107)
69 cd03705 EF1_alpha_III Domain I 99.9 4.3E-22 9.4E-27 156.7 11.7 102 269-373 2-104 (104)
70 cd01885 EF2 EF2 (for archaea a 99.9 2.6E-21 5.6E-26 172.3 13.5 139 2-148 35-201 (222)
71 KOG0469 Elongation factor 2 [T 99.9 6.8E-22 1.5E-26 185.6 9.6 250 2-264 54-474 (842)
72 cd04165 GTPBP1_like GTPBP1-lik 99.9 6E-21 1.3E-25 170.6 13.4 144 4-173 34-223 (224)
73 cd04095 CysN_NoDQ_III TCysN_No 99.8 1.7E-20 3.7E-25 147.2 12.0 100 269-373 2-103 (103)
74 cd01886 EF-G Elongation factor 99.8 1E-20 2.2E-25 173.7 11.9 139 2-158 36-175 (270)
75 cd01889 SelB_euk SelB subfamil 99.8 9.1E-20 2E-24 159.9 14.3 137 3-150 27-177 (192)
76 cd01888 eIF2_gamma eIF2-gamma 99.8 7E-20 1.5E-24 162.0 13.0 133 5-150 25-190 (203)
77 PF03143 GTP_EFTU_D3: Elongati 99.8 1.4E-19 3E-24 140.6 12.7 98 266-376 1-98 (99)
78 KOG0464 Elongation factor G [T 99.8 6.5E-21 1.4E-25 175.5 4.7 240 4-265 76-420 (753)
79 cd01513 Translation_factor_III 99.8 7E-19 1.5E-23 138.0 12.7 100 269-373 2-102 (102)
80 cd03693 EF1_alpha_II EF1_alpha 99.8 1E-18 2.2E-23 133.6 11.1 87 179-265 2-90 (91)
81 cd01891 TypA_BipA TypA (tyrosi 99.8 3E-18 6.5E-23 150.5 14.8 135 3-150 38-173 (194)
82 KOG0467 Translation elongation 99.8 1.1E-17 2.3E-22 164.7 18.8 92 3-102 45-136 (887)
83 cd04168 TetM_like Tet(M)-like 99.8 3.5E-18 7.6E-23 154.2 13.7 96 3-106 37-132 (237)
84 cd04089 eRF3_II eRF3_II: domai 99.8 3.5E-18 7.5E-23 128.0 11.1 82 181-262 1-82 (82)
85 cd04171 SelB SelB subfamily. 99.8 1.4E-17 3.1E-22 141.5 14.2 131 6-150 26-157 (164)
86 cd03698 eRF3_II_like eRF3_II_l 99.8 1E-17 2.2E-22 125.9 11.0 82 181-262 1-83 (83)
87 cd04167 Snu114p Snu114p subfam 99.7 4.1E-17 8.9E-22 145.4 15.6 136 2-147 38-191 (213)
88 cd01890 LepA LepA subfamily. 99.7 4.8E-17 1E-21 140.7 14.7 129 3-150 35-168 (179)
89 KOG1144 Translation initiation 99.7 3.6E-17 7.8E-22 160.1 13.2 215 11-244 503-793 (1064)
90 cd03694 GTPBP_II Domain II of 99.7 6.2E-17 1.4E-21 122.5 10.0 81 182-262 1-87 (87)
91 cd04169 RF3 RF3 subfamily. Pe 99.7 1.1E-16 2.4E-21 146.9 12.5 108 4-124 45-152 (267)
92 cd03697 EFTU_II EFTU_II: Elong 99.7 9.6E-17 2.1E-21 121.6 8.9 83 182-264 1-87 (87)
93 KOG0468 U5 snRNP-specific prot 99.7 1.6E-15 3.5E-20 147.2 18.7 92 3-102 165-261 (971)
94 cd00881 GTP_translation_factor 99.7 7.2E-16 1.6E-20 134.2 14.7 135 4-150 36-178 (189)
95 cd03696 selB_II selB_II: this 99.7 4E-16 8.6E-21 117.3 10.2 81 182-262 1-83 (83)
96 cd03695 CysN_NodQ_II CysN_NodQ 99.7 1.1E-15 2.3E-20 114.0 10.8 79 182-262 1-81 (81)
97 COG1160 Predicted GTPases [Gen 99.6 3.8E-15 8.3E-20 141.2 13.0 125 13-152 209-344 (444)
98 cd04170 EF-G_bact Elongation f 99.6 5.8E-15 1.3E-19 136.2 13.2 129 3-151 37-165 (268)
99 cd03706 mtEFTU_III Domain III 99.6 2E-14 4.4E-19 110.4 12.3 88 270-376 3-93 (93)
100 COG1159 Era GTPase [General fu 99.6 1.8E-14 3.8E-19 129.7 10.5 150 13-191 37-197 (298)
101 cd03707 EFTU_III Domain III of 99.6 5E-14 1.1E-18 107.6 11.3 85 270-373 3-90 (90)
102 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 3.6E-14 7.7E-19 121.2 11.7 129 9-151 26-158 (168)
103 COG1160 Predicted GTPases [Gen 99.5 4.4E-14 9.4E-19 134.0 12.7 116 13-152 34-158 (444)
104 cd03708 GTPBP_III Domain III o 99.5 5.8E-14 1.3E-18 106.6 10.7 84 269-376 2-87 (87)
105 TIGR03594 GTPase_EngA ribosome 99.5 1.4E-13 3.1E-18 135.7 12.7 126 11-152 201-337 (429)
106 TIGR00436 era GTP-binding prot 99.5 3.4E-13 7.5E-18 124.5 12.0 119 13-152 31-157 (270)
107 PRK00093 GTP-binding protein D 99.5 6E-13 1.3E-17 131.4 14.0 125 11-152 202-337 (435)
108 PF02421 FeoB_N: Ferrous iron 99.4 1.6E-13 3.4E-18 114.6 6.5 114 14-150 31-152 (156)
109 cd04160 Arfrp1 Arfrp1 subfamil 99.4 3E-13 6.6E-18 115.4 8.1 123 14-150 34-160 (167)
110 PRK15494 era GTPase Era; Provi 99.4 2E-13 4.4E-18 129.7 7.3 147 13-190 83-240 (339)
111 cd01894 EngA1 EngA1 subfamily. 99.4 2.3E-12 5E-17 108.4 13.0 117 11-151 26-150 (157)
112 cd01895 EngA2 EngA2 subfamily. 99.4 3.1E-12 6.8E-17 109.3 13.3 125 11-150 31-166 (174)
113 cd01879 FeoB Ferrous iron tran 99.4 1.5E-12 3.3E-17 109.7 10.8 117 12-151 25-149 (158)
114 TIGR03594 GTPase_EngA ribosome 99.4 2.6E-12 5.6E-17 126.7 11.1 116 13-152 30-153 (429)
115 PRK03003 GTP-binding protein D 99.4 4.6E-12 9.9E-17 126.0 12.5 125 11-152 240-375 (472)
116 cd03688 eIF2_gamma_II eIF2_gam 99.4 1.1E-11 2.4E-16 95.2 11.6 86 178-263 2-112 (113)
117 cd01864 Rab19 Rab19 subfamily. 99.3 2.4E-12 5.3E-17 109.7 7.1 128 6-151 26-158 (165)
118 TIGR03598 GTPase_YsxC ribosome 99.3 1.5E-11 3.3E-16 106.4 12.0 117 13-148 50-179 (179)
119 PRK03003 GTP-binding protein D 99.3 1.4E-11 3.1E-16 122.5 12.3 118 11-152 67-192 (472)
120 KOG0092 GTPase Rab5/YPT51 and 99.3 4.9E-12 1.1E-16 106.2 7.3 128 3-150 25-158 (200)
121 PRK00089 era GTPase Era; Revie 99.3 1.9E-11 4E-16 114.4 12.1 119 15-152 38-164 (292)
122 cd04120 Rab12 Rab12 subfamily. 99.3 6.4E-12 1.4E-16 110.7 7.8 131 4-152 21-156 (202)
123 cd04094 selB_III This family r 99.3 4.6E-11 1E-15 92.4 11.5 95 257-373 1-97 (97)
124 PRK09518 bifunctional cytidyla 99.3 2.7E-11 5.8E-16 126.2 12.8 123 13-152 481-614 (712)
125 cd04151 Arl1 Arl1 subfamily. 99.3 1.5E-11 3.3E-16 104.0 9.0 119 17-151 30-152 (158)
126 KOG0084 GTPase Rab1/YPT1, smal 99.3 1.4E-11 2.9E-16 104.0 8.3 130 4-151 30-164 (205)
127 cd04157 Arl6 Arl6 subfamily. 99.3 3.1E-11 6.8E-16 102.2 10.4 113 22-150 37-155 (162)
128 PRK00093 GTP-binding protein D 99.3 3E-11 6.5E-16 119.3 11.8 115 13-151 32-154 (435)
129 PRK09866 hypothetical protein; 99.3 5.4E-11 1.2E-15 117.8 13.0 110 29-151 229-345 (741)
130 PTZ00099 rab6; Provisional 99.3 7.9E-12 1.7E-16 107.8 6.3 127 7-152 4-135 (176)
131 cd04154 Arl2 Arl2 subfamily. 99.2 2.5E-11 5.4E-16 104.4 9.0 113 22-150 50-166 (173)
132 cd03692 mtIF2_IVc mtIF2_IVc: t 99.2 1.2E-10 2.5E-15 87.5 11.2 75 184-260 3-82 (84)
133 COG2229 Predicted GTPase [Gene 99.2 5.9E-11 1.3E-15 99.3 10.4 118 13-150 50-169 (187)
134 cd04124 RabL2 RabL2 subfamily. 99.2 6.9E-11 1.5E-15 100.4 10.9 103 28-152 47-151 (161)
135 PRK09518 bifunctional cytidyla 99.2 8E-11 1.7E-15 122.7 12.8 117 12-152 305-429 (712)
136 cd04150 Arf1_5_like Arf1-Arf5- 99.2 8.6E-11 1.9E-15 99.7 10.6 112 23-150 37-152 (159)
137 PLN00223 ADP-ribosylation fact 99.2 9.5E-11 2.1E-15 101.6 11.1 116 20-151 51-170 (181)
138 cd04149 Arf6 Arf6 subfamily. 99.2 5E-11 1.1E-15 102.1 9.0 111 24-150 47-161 (168)
139 PRK12298 obgE GTPase CgtA; Rev 99.2 3.6E-11 7.8E-16 115.9 8.6 152 14-190 190-357 (390)
140 cd04121 Rab40 Rab40 subfamily. 99.2 6.7E-11 1.4E-15 103.2 9.4 128 6-152 29-160 (189)
141 cd04158 ARD1 ARD1 subfamily. 99.2 5.4E-11 1.2E-15 101.9 8.6 121 16-151 29-153 (169)
142 cd01898 Obg Obg subfamily. Th 99.2 1.3E-10 2.8E-15 99.3 10.9 118 14-150 31-162 (170)
143 TIGR00437 feoB ferrous iron tr 99.2 8E-11 1.7E-15 119.6 10.5 119 11-152 22-148 (591)
144 cd04145 M_R_Ras_like M-Ras/R-R 99.2 1.8E-10 3.9E-15 97.8 10.8 103 30-151 50-156 (164)
145 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 1.1E-10 2.3E-15 100.6 9.4 120 16-151 45-168 (174)
146 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 1.1E-10 2.4E-15 102.9 9.5 106 29-152 49-161 (201)
147 cd01861 Rab6 Rab6 subfamily. 99.2 1.8E-10 4E-15 97.4 10.4 126 7-151 24-154 (161)
148 PRK09554 feoB ferrous iron tra 99.2 1.4E-10 3.1E-15 120.5 11.3 116 13-151 33-160 (772)
149 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 1.1E-10 2.5E-15 101.3 8.9 113 28-152 50-163 (183)
150 cd04106 Rab23_lke Rab23-like s 99.2 1.1E-10 2.4E-15 98.9 8.6 119 13-150 30-154 (162)
151 TIGR00231 small_GTP small GTP- 99.2 5.8E-11 1.3E-15 99.3 6.7 128 6-150 24-155 (161)
152 smart00177 ARF ARF-like small 99.2 1.4E-10 3.1E-15 100.0 9.3 114 22-151 49-166 (175)
153 cd04113 Rab4 Rab4 subfamily. 99.2 5.9E-11 1.3E-15 100.6 6.6 123 10-151 27-154 (161)
154 cd04128 Spg1 Spg1p. Spg1p (se 99.2 2.4E-10 5.2E-15 99.2 10.6 115 23-152 40-159 (182)
155 cd04156 ARLTS1 ARLTS1 subfamil 99.2 1.6E-10 3.4E-15 97.8 9.2 109 28-151 42-154 (160)
156 cd04108 Rab36_Rab34 Rab34/Rab3 99.2 1.1E-10 2.3E-15 100.2 8.3 132 5-152 22-158 (170)
157 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 1.7E-10 3.6E-15 98.4 9.2 119 14-151 33-156 (166)
158 cd01897 NOG NOG1 is a nucleola 99.1 2.2E-10 4.8E-15 97.7 9.9 120 13-151 30-160 (168)
159 cd04162 Arl9_Arfrp2_like Arl9/ 99.1 2.8E-10 6E-15 97.1 9.8 114 22-150 36-157 (164)
160 cd01867 Rab8_Rab10_Rab13_like 99.1 1.2E-10 2.7E-15 99.4 7.6 120 13-151 33-157 (167)
161 cd01860 Rab5_related Rab5-rela 99.1 1.8E-10 3.9E-15 97.7 8.5 113 20-151 40-155 (163)
162 cd00878 Arf_Arl Arf (ADP-ribos 99.1 2.3E-10 5E-15 96.6 8.9 118 17-150 30-151 (158)
163 cd04142 RRP22 RRP22 subfamily. 99.1 2.6E-10 5.6E-15 100.3 9.4 129 6-152 23-167 (198)
164 cd04127 Rab27A Rab27a subfamil 99.1 2.3E-10 5.1E-15 98.8 8.9 105 29-152 62-170 (180)
165 cd04122 Rab14 Rab14 subfamily. 99.1 1.2E-10 2.6E-15 99.3 7.0 104 29-151 50-156 (166)
166 cd04116 Rab9 Rab9 subfamily. 99.1 3.3E-10 7.1E-15 96.9 9.7 127 6-151 28-163 (170)
167 smart00176 RAN Ran (Ras-relate 99.1 5.2E-10 1.1E-14 98.4 10.7 103 29-152 43-147 (200)
168 cd04112 Rab26 Rab26 subfamily. 99.1 1.7E-10 3.8E-15 100.9 7.7 105 29-152 49-156 (191)
169 cd01866 Rab2 Rab2 subfamily. 99.1 3.3E-10 7.2E-15 96.9 9.2 104 29-151 52-158 (168)
170 PTZ00133 ADP-ribosylation fact 99.1 5E-10 1.1E-14 97.2 10.3 115 22-152 53-171 (182)
171 smart00175 RAB Rab subfamily o 99.1 2.7E-10 5.9E-15 96.5 8.4 122 11-151 28-154 (164)
172 cd04138 H_N_K_Ras_like H-Ras/N 99.1 3.7E-10 8.1E-15 95.4 9.1 102 30-151 49-154 (162)
173 cd01865 Rab3 Rab3 subfamily. 99.1 1.6E-10 3.5E-15 98.5 6.8 104 29-151 49-155 (165)
174 PRK12299 obgE GTPase CgtA; Rev 99.1 7.1E-10 1.5E-14 105.0 11.8 120 14-152 189-321 (335)
175 PRK04213 GTP-binding protein; 99.1 3.4E-10 7.5E-15 99.7 9.1 129 8-151 34-184 (201)
176 KOG0098 GTPase Rab2, small G p 99.1 7.8E-11 1.7E-15 98.3 4.5 117 16-151 39-160 (216)
177 cd01863 Rab18 Rab18 subfamily. 99.1 2.6E-10 5.7E-15 96.5 7.9 104 28-151 47-154 (161)
178 cd01881 Obg_like The Obg-like 99.1 7.6E-10 1.7E-14 94.9 10.8 124 12-151 25-169 (176)
179 PF10662 PduV-EutP: Ethanolami 99.1 3.1E-10 6.8E-15 92.8 7.7 95 33-150 39-137 (143)
180 cd01868 Rab11_like Rab11-like. 99.1 2.1E-10 4.5E-15 97.6 6.8 122 11-151 31-157 (165)
181 KOG0078 GTP-binding protein SE 99.1 2.1E-10 4.5E-15 98.2 6.7 114 18-150 47-165 (207)
182 cd04161 Arl2l1_Arl13_like Arl2 99.1 3.6E-10 7.7E-15 96.7 8.2 119 16-149 29-159 (167)
183 smart00178 SAR Sar1p-like memb 99.1 4.7E-10 1E-14 97.5 9.1 120 17-150 48-176 (184)
184 cd04140 ARHI_like ARHI subfami 99.1 1.1E-09 2.4E-14 93.3 11.1 105 28-151 47-157 (165)
185 PRK15467 ethanolamine utilizat 99.1 5.2E-10 1.1E-14 94.8 9.0 95 34-151 41-139 (158)
186 cd04144 Ras2 Ras2 subfamily. 99.1 3.7E-10 8E-15 98.7 8.2 104 30-152 47-156 (190)
187 cd04109 Rab28 Rab28 subfamily. 99.1 4.9E-10 1.1E-14 100.0 9.1 125 9-152 26-159 (215)
188 cd04164 trmE TrmE (MnmE, ThdF, 99.1 1.2E-09 2.7E-14 91.6 11.1 109 13-151 32-149 (157)
189 cd00154 Rab Rab family. Rab G 99.1 5.7E-10 1.2E-14 93.5 8.9 118 14-150 31-153 (159)
190 COG0486 ThdF Predicted GTPase 99.1 5E-10 1.1E-14 107.0 9.2 113 14-152 249-369 (454)
191 PRK05291 trmE tRNA modificatio 99.1 6E-10 1.3E-14 109.9 10.1 111 12-152 245-363 (449)
192 cd04126 Rab20 Rab20 subfamily. 99.1 3.7E-10 8.1E-15 100.7 7.9 129 17-152 31-183 (220)
193 cd04114 Rab30 Rab30 subfamily. 99.1 2.6E-10 5.7E-15 97.3 6.6 115 18-151 42-161 (169)
194 cd01862 Rab7 Rab7 subfamily. 99.1 8.3E-10 1.8E-14 94.4 9.7 110 24-151 41-159 (172)
195 TIGR02528 EutP ethanolamine ut 99.1 2.5E-10 5.4E-15 94.7 6.2 95 33-150 38-136 (142)
196 cd04115 Rab33B_Rab33A Rab33B/R 99.1 8.1E-10 1.7E-14 94.7 9.3 127 5-150 24-160 (170)
197 cd01871 Rac1_like Rac1-like su 99.1 1.1E-09 2.3E-14 94.4 10.0 111 29-151 48-167 (174)
198 cd04136 Rap_like Rap-like subf 99.1 8E-10 1.7E-14 93.6 9.1 103 30-151 49-155 (163)
199 smart00173 RAS Ras subfamily o 99.1 4.1E-10 8.9E-15 95.6 7.2 104 29-151 47-154 (164)
200 cd00880 Era_like Era (E. coli 99.0 3.3E-09 7.2E-14 88.6 12.6 122 12-150 26-155 (163)
201 cd04110 Rab35 Rab35 subfamily. 99.0 8.2E-10 1.8E-14 97.3 9.2 115 19-152 42-160 (199)
202 PRK12296 obgE GTPase CgtA; Rev 99.0 1.6E-09 3.4E-14 106.7 12.0 122 14-152 190-333 (500)
203 cd04147 Ras_dva Ras-dva subfam 99.0 5.5E-10 1.2E-14 98.3 8.0 114 22-152 37-156 (198)
204 cd04163 Era Era subfamily. Er 99.0 4.4E-09 9.6E-14 88.8 13.2 115 17-150 38-160 (168)
205 cd01874 Cdc42 Cdc42 subfamily. 99.0 8.1E-10 1.8E-14 95.3 8.7 107 30-151 49-167 (175)
206 cd00879 Sar1 Sar1 subfamily. 99.0 8.5E-10 1.8E-14 96.3 8.8 120 17-151 50-183 (190)
207 cd01882 BMS1 Bms1. Bms1 is an 99.0 3E-09 6.5E-14 95.4 12.5 122 27-173 80-201 (225)
208 cd04159 Arl10_like Arl10-like 99.0 1.9E-09 4.2E-14 90.3 10.7 112 23-150 37-152 (159)
209 cd04175 Rap1 Rap1 subgroup. T 99.0 7.4E-10 1.6E-14 94.2 8.1 109 24-151 41-155 (164)
210 cd04143 Rhes_like Rhes_like su 99.0 1.1E-09 2.3E-14 99.7 9.5 111 24-152 40-164 (247)
211 PF03144 GTP_EFTU_D2: Elongati 99.0 1.2E-09 2.6E-14 80.0 8.1 68 194-261 1-74 (74)
212 TIGR03156 GTP_HflX GTP-binding 99.0 7E-10 1.5E-14 105.8 8.7 113 13-150 219-343 (351)
213 cd04176 Rap2 Rap2 subgroup. T 99.0 1.2E-09 2.6E-14 92.7 9.3 103 30-151 49-155 (163)
214 cd01893 Miro1 Miro1 subfamily. 99.0 2.3E-09 4.9E-14 91.5 11.0 109 28-151 45-156 (166)
215 PTZ00369 Ras-like protein; Pro 99.0 1.2E-09 2.5E-14 95.4 9.3 105 29-152 52-160 (189)
216 smart00174 RHO Rho (Ras homolo 99.0 1.1E-09 2.3E-14 94.1 8.9 109 30-152 46-165 (174)
217 cd04119 RJL RJL (RabJ-Like) su 99.0 5.5E-10 1.2E-14 94.9 6.6 120 13-151 30-159 (168)
218 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 1.6E-09 3.4E-14 91.3 9.1 119 15-151 52-177 (221)
219 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.0 1.4E-09 3E-14 93.5 9.1 104 30-152 50-157 (172)
220 cd04118 Rab24 Rab24 subfamily. 99.0 1.3E-09 2.9E-14 95.3 9.1 113 25-152 43-159 (193)
221 TIGR02729 Obg_CgtA Obg family 99.0 3.2E-09 6.9E-14 100.4 12.0 120 15-151 189-321 (329)
222 cd04133 Rop_like Rop subfamily 99.0 8.9E-10 1.9E-14 95.0 7.5 112 29-152 48-166 (176)
223 PRK12297 obgE GTPase CgtA; Rev 99.0 3.3E-09 7.1E-14 103.1 12.2 119 14-152 189-320 (424)
224 cd04139 RalA_RalB RalA/RalB su 99.0 1.5E-09 3.2E-14 91.9 8.6 105 29-152 47-155 (164)
225 PLN03118 Rab family protein; P 99.0 2E-09 4.3E-14 95.7 9.8 105 29-152 61-170 (211)
226 PRK00454 engB GTP-binding prot 99.0 5.5E-09 1.2E-13 91.5 12.1 118 13-151 56-186 (196)
227 cd04132 Rho4_like Rho4-like su 99.0 1.7E-09 3.8E-14 94.0 8.7 109 30-152 49-160 (187)
228 PRK11058 GTPase HflX; Provisio 99.0 2.6E-09 5.6E-14 104.3 10.7 120 13-152 227-355 (426)
229 cd04101 RabL4 RabL4 (Rab-like4 99.0 2.5E-09 5.4E-14 90.8 9.4 105 28-151 50-156 (164)
230 cd00877 Ran Ran (Ras-related n 99.0 2.3E-09 5E-14 91.5 9.0 103 29-152 48-152 (166)
231 cd01892 Miro2 Miro2 subfamily. 99.0 1.4E-09 3E-14 93.2 7.4 104 30-151 54-158 (169)
232 cd04130 Wrch_1 Wrch-1 subfamil 99.0 1E-09 2.2E-14 94.3 6.6 109 29-151 47-166 (173)
233 cd01878 HflX HflX subfamily. 99.0 6.9E-09 1.5E-13 91.7 11.8 114 14-151 72-197 (204)
234 PF00025 Arf: ADP-ribosylation 99.0 3.4E-09 7.3E-14 91.4 9.5 119 17-150 45-167 (175)
235 PLN03071 GTP-binding nuclear p 99.0 2.5E-09 5.5E-14 95.6 9.0 127 5-152 35-165 (219)
236 cd04146 RERG_RasL11_like RERG/ 99.0 2.5E-09 5.5E-14 91.0 8.4 104 29-151 46-156 (165)
237 PLN03110 Rab GTPase; Provision 99.0 1.6E-09 3.4E-14 96.7 7.4 121 13-152 42-167 (216)
238 cd04177 RSR1 RSR1 subgroup. R 99.0 1.8E-09 3.9E-14 92.2 7.5 104 30-151 49-156 (168)
239 cd01875 RhoG RhoG subfamily. 99.0 7.5E-09 1.6E-13 90.5 11.5 112 29-152 50-170 (191)
240 cd04123 Rab21 Rab21 subfamily. 99.0 1.5E-09 3.1E-14 91.7 6.7 104 29-151 48-154 (162)
241 cd04117 Rab15 Rab15 subfamily. 98.9 1.9E-09 4.2E-14 91.5 7.4 117 15-150 32-153 (161)
242 cd04155 Arl3 Arl3 subfamily. 98.9 3.1E-09 6.7E-14 91.1 8.6 112 23-150 51-166 (173)
243 cd04135 Tc10 TC10 subfamily. 98.9 1.7E-09 3.7E-14 92.8 6.6 110 30-151 48-166 (174)
244 cd04111 Rab39 Rab39 subfamily. 98.9 1.5E-09 3.2E-14 96.5 6.4 104 30-152 52-159 (211)
245 TIGR00450 mnmE_trmE_thdF tRNA 98.9 7.7E-09 1.7E-13 101.6 11.9 112 13-152 234-353 (442)
246 cd04134 Rho3 Rho3 subfamily. 98.9 4.3E-09 9.2E-14 91.9 8.9 112 29-152 47-167 (189)
247 cd01342 Translation_Factor_II_ 98.9 1.2E-08 2.6E-13 75.6 10.1 78 182-261 1-82 (83)
248 cd04125 RabA_like RabA-like su 98.9 2.9E-09 6.2E-14 92.8 7.1 104 29-152 48-155 (188)
249 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.9 6.4E-09 1.4E-13 93.4 8.9 112 29-152 60-181 (232)
250 PLN03108 Rab family protein; P 98.9 5.4E-09 1.2E-13 92.9 8.1 103 30-151 55-160 (210)
251 KOG0093 GTPase Rab3, small G p 98.9 1.3E-09 2.8E-14 87.4 3.6 108 29-152 69-176 (193)
252 COG0218 Predicted GTPase [Gene 98.9 2.9E-08 6.2E-13 85.1 11.8 122 12-151 55-189 (200)
253 cd00157 Rho Rho (Ras homology) 98.9 8.5E-09 1.8E-13 88.0 8.8 108 29-150 47-164 (171)
254 COG0370 FeoB Fe2+ transport sy 98.9 1E-08 2.2E-13 102.2 9.8 115 14-151 34-156 (653)
255 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 1.3E-08 2.8E-13 88.3 9.3 110 29-151 52-172 (182)
256 cd00876 Ras Ras family. The R 98.9 1.2E-08 2.7E-13 85.8 8.9 104 29-151 46-153 (160)
257 cd01876 YihA_EngB The YihA (En 98.8 3.7E-08 8.1E-13 83.4 11.9 119 13-150 31-162 (170)
258 KOG0095 GTPase Rab30, small G 98.8 7E-09 1.5E-13 83.4 6.2 118 15-151 37-161 (213)
259 cd04131 Rnd Rnd subfamily. Th 98.8 5.9E-09 1.3E-13 90.1 6.1 111 29-151 48-168 (178)
260 KOG0087 GTPase Rab11/YPT3, sma 98.8 6E-09 1.3E-13 89.1 5.7 126 8-152 39-169 (222)
261 cd01870 RhoA_like RhoA-like su 98.8 1.6E-08 3.5E-13 86.7 8.5 111 29-151 48-167 (175)
262 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.8 1.9E-08 4.2E-13 89.8 9.2 109 29-152 48-169 (222)
263 KOG0086 GTPase Rab4, small G p 98.8 3.3E-09 7.1E-14 85.6 3.6 123 10-150 36-162 (214)
264 cd04105 SR_beta Signal recogni 98.8 4.6E-08 1E-12 86.4 11.4 73 28-106 46-125 (203)
265 PF14578 GTP_EFTU_D4: Elongati 98.8 9.2E-08 2E-12 69.8 10.7 75 180-260 3-79 (81)
266 cd03690 Tet_II Tet_II: This su 98.8 3.3E-08 7.2E-13 74.3 8.7 78 179-261 1-84 (85)
267 cd04092 mtEFG2_II_like mtEFG2_ 98.8 4.8E-08 1E-12 73.2 9.5 76 183-262 2-83 (83)
268 cd00882 Ras_like_GTPase Ras-li 98.8 3.1E-08 6.7E-13 81.7 9.3 103 29-150 44-151 (157)
269 cd01896 DRG The developmentall 98.8 2.5E-08 5.5E-13 89.9 9.4 53 14-66 31-90 (233)
270 cd04137 RheB Rheb (Ras Homolog 98.8 1.1E-08 2.5E-13 88.2 6.8 105 29-152 48-156 (180)
271 KOG0076 GTP-binding ADP-ribosy 98.8 8.7E-09 1.9E-13 85.2 5.5 123 16-150 55-178 (197)
272 cd04148 RGK RGK subfamily. Th 98.8 2.8E-08 6.1E-13 89.0 9.0 104 28-152 48-156 (221)
273 KOG0088 GTPase Rab21, small G 98.8 3.7E-09 8E-14 85.8 2.8 106 28-152 60-168 (218)
274 cd04088 EFG_mtEFG_II EFG_mtEFG 98.8 6.9E-08 1.5E-12 72.3 9.5 74 184-261 3-82 (83)
275 KOG0083 GTPase Rab26/Rab37, sm 98.7 5.2E-09 1.1E-13 82.5 2.8 103 28-149 45-150 (192)
276 KOG0080 GTPase Rab18, small G 98.7 1E-08 2.2E-13 83.5 4.4 130 2-150 30-165 (209)
277 cd01873 RhoBTB RhoBTB subfamil 98.7 5.6E-08 1.2E-12 85.2 9.5 108 29-151 65-188 (195)
278 KOG0070 GTP-binding ADP-ribosy 98.7 5.2E-08 1.1E-12 81.8 8.7 118 17-150 48-169 (181)
279 KOG0097 GTPase Rab14, small G 98.7 2.8E-08 6E-13 79.1 6.3 117 16-150 44-164 (215)
280 cd03699 lepA_II lepA_II: This 98.7 2.2E-07 4.7E-12 70.1 10.6 80 182-262 1-86 (86)
281 KOG0075 GTP-binding ADP-ribosy 98.7 1E-07 2.2E-12 76.7 9.0 117 16-150 51-173 (186)
282 cd03691 BipA_TypA_II BipA_TypA 98.7 1.9E-07 4.1E-12 70.5 10.1 76 182-261 1-85 (86)
283 KOG1423 Ras-like GTPase ERA [C 98.7 7E-08 1.5E-12 87.1 8.9 84 11-102 101-197 (379)
284 KOG0073 GTP-binding ADP-ribosy 98.7 1.4E-07 2.9E-12 77.5 9.7 112 23-149 53-168 (185)
285 cd03689 RF3_II RF3_II: this su 98.7 1.9E-07 4.2E-12 70.1 9.4 67 192-262 14-84 (85)
286 cd04091 mtEFG1_II_like mtEFG1_ 98.6 2.9E-07 6.2E-12 68.6 9.6 73 184-261 3-80 (81)
287 COG1163 DRG Predicted GTPase [ 98.6 8.3E-08 1.8E-12 87.5 7.3 52 16-67 96-154 (365)
288 KOG0079 GTP-binding protein H- 98.6 6.2E-08 1.4E-12 77.9 5.8 105 28-151 55-161 (198)
289 KOG0081 GTPase Rab27, small G 98.6 8.4E-08 1.8E-12 78.1 6.6 104 31-152 68-174 (219)
290 COG1084 Predicted GTPase [Gene 98.6 1.8E-07 3.8E-12 85.6 9.1 118 16-150 201-327 (346)
291 PF00071 Ras: Ras family; Int 98.6 1.4E-07 3E-12 79.8 7.8 114 18-150 34-152 (162)
292 KOG0394 Ras-related GTPase [Ge 98.6 5.6E-08 1.2E-12 81.3 4.9 126 13-151 37-170 (210)
293 cd04129 Rho2 Rho2 subfamily. 98.6 1.2E-07 2.7E-12 82.5 7.1 110 30-152 49-166 (187)
294 KOG0091 GTPase Rab39, small G 98.6 2.3E-07 4.9E-12 76.1 7.7 105 30-152 58-166 (213)
295 PRK13768 GTPase; Provisional 98.6 2.5E-07 5.5E-12 84.4 9.0 106 29-150 96-238 (253)
296 cd04103 Centaurin_gamma Centau 98.6 3.5E-07 7.5E-12 77.4 9.1 106 25-151 40-151 (158)
297 KOG1191 Mitochondrial GTPase [ 98.5 9.9E-08 2.2E-12 91.4 5.7 124 13-152 299-443 (531)
298 cd04102 RabL3 RabL3 (Rab-like3 98.5 6.6E-07 1.4E-11 78.8 10.2 104 30-148 54-179 (202)
299 PF04670 Gtr1_RagA: Gtr1/RagA 98.5 5.2E-07 1.1E-11 80.7 9.4 129 9-144 25-162 (232)
300 PF09439 SRPRB: Signal recogni 98.5 2.6E-07 5.7E-12 79.1 7.1 73 28-106 47-128 (181)
301 PF01926 MMR_HSR1: 50S ribosom 98.5 4.9E-07 1.1E-11 72.2 7.8 78 13-99 30-116 (116)
302 COG2262 HflX GTPases [General 98.5 4.7E-07 1E-11 85.4 7.7 113 16-152 225-349 (411)
303 cd04104 p47_IIGP_like p47 (47- 98.5 1.4E-06 3.1E-11 76.5 10.4 107 30-149 52-174 (197)
304 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.6E-06 3.5E-11 71.8 10.1 80 45-146 3-84 (141)
305 KOG0072 GTP-binding ADP-ribosy 98.4 8.2E-07 1.8E-11 71.3 7.3 118 18-150 50-170 (182)
306 KOG0071 GTP-binding ADP-ribosy 98.4 8.2E-07 1.8E-11 71.0 7.1 113 21-149 52-168 (180)
307 KOG1489 Predicted GTP-binding 98.4 2.7E-06 5.8E-11 77.5 11.2 118 16-151 229-359 (366)
308 cd01859 MJ1464 MJ1464. This f 98.4 2.4E-06 5.2E-11 72.0 10.2 82 47-150 6-87 (156)
309 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.4E-06 3E-11 73.6 8.6 84 47-151 2-87 (157)
310 cd01852 AIG1 AIG1 (avrRpt2-ind 98.4 2.2E-06 4.8E-11 75.2 9.9 106 13-127 32-153 (196)
311 cd01856 YlqF YlqF. Proteins o 98.4 1.5E-06 3.2E-11 74.5 7.9 92 37-152 2-94 (171)
312 PTZ00132 GTP-binding nuclear p 98.4 2.2E-06 4.7E-11 76.4 9.1 103 28-151 56-160 (215)
313 cd03700 eEF2_snRNP_like_II EF2 98.4 4.2E-06 9E-11 64.1 9.5 73 185-261 4-92 (93)
314 PLN00023 GTP-binding protein; 98.3 1.9E-06 4.1E-11 80.3 8.5 91 30-129 83-190 (334)
315 cd01855 YqeH YqeH. YqeH is an 98.3 4.8E-06 1E-10 72.7 8.9 93 42-150 23-116 (190)
316 KOG0090 Signal recognition par 98.2 1.1E-05 2.3E-10 69.6 10.4 98 16-121 68-176 (238)
317 TIGR03596 GTPase_YlqF ribosome 98.2 5E-06 1.1E-10 77.0 8.9 90 38-151 5-95 (276)
318 cd01850 CDC_Septin CDC/Septin. 98.2 1E-05 2.2E-10 74.8 10.2 103 13-128 44-177 (276)
319 KOG0395 Ras-related GTPase [Ge 98.2 4E-06 8.6E-11 73.4 6.9 108 29-152 50-158 (196)
320 cd04090 eEF2_II_snRNP Loc2 eEF 98.2 1.8E-05 3.9E-10 60.6 9.7 66 184-251 3-84 (94)
321 cd01849 YlqF_related_GTPase Yl 98.1 1.7E-05 3.6E-10 66.9 9.4 76 55-151 1-77 (155)
322 PRK09435 membrane ATPase/prote 98.1 1.6E-05 3.5E-10 74.9 9.5 107 27-152 146-253 (332)
323 COG4917 EutP Ethanolamine util 98.1 8.6E-06 1.9E-10 64.1 6.1 93 34-150 41-137 (148)
324 PRK12289 GTPase RsgA; Reviewed 98.1 1.4E-05 3E-10 76.1 8.7 84 49-152 85-168 (352)
325 KOG0393 Ras-related small GTPa 98.1 1.2E-05 2.6E-10 69.3 7.5 136 2-152 23-172 (198)
326 PRK09563 rbgA GTPase YlqF; Rev 98.1 1.2E-05 2.6E-10 74.9 8.0 91 37-151 7-98 (287)
327 PF08477 Miro: Miro-like prote 98.1 3.5E-06 7.7E-11 67.3 3.6 80 15-101 35-119 (119)
328 TIGR00157 ribosome small subun 98.1 7.4E-06 1.6E-10 74.4 6.1 92 41-151 24-115 (245)
329 COG3596 Predicted GTPase [Gene 98.0 4.4E-05 9.5E-10 68.6 10.7 111 26-150 83-213 (296)
330 PF03029 ATP_bind_1: Conserved 98.0 5.8E-06 1.3E-10 74.6 5.2 112 31-150 92-228 (238)
331 KOG1532 GTPase XAB1, interacts 98.0 3.4E-05 7.4E-10 69.0 9.1 122 28-152 114-257 (366)
332 COG1100 GTPase SAR1 and relate 98.0 2.1E-05 4.5E-10 70.0 8.0 94 4-103 26-124 (219)
333 PRK00098 GTPase RsgA; Reviewed 97.9 2.5E-05 5.4E-10 73.2 7.0 82 51-151 78-159 (298)
334 TIGR00487 IF-2 translation ini 97.8 0.00042 9E-09 70.7 14.9 180 34-262 391-576 (587)
335 TIGR00750 lao LAO/AO transport 97.8 8.2E-05 1.8E-09 69.8 8.8 104 26-152 123-231 (300)
336 KOG0074 GTP-binding ADP-ribosy 97.8 4E-05 8.6E-10 61.5 5.5 128 8-151 37-171 (185)
337 TIGR03597 GTPase_YqeH ribosome 97.8 6.9E-05 1.5E-09 72.0 8.2 96 41-152 51-146 (360)
338 KOG3886 GTP-binding protein [S 97.8 4.5E-05 9.7E-10 66.6 6.0 123 12-143 34-163 (295)
339 smart00053 DYNc Dynamin, GTPas 97.8 0.00011 2.4E-09 66.2 8.7 66 29-102 124-204 (240)
340 CHL00189 infB translation init 97.8 0.00082 1.8E-08 69.9 15.9 181 33-262 547-732 (742)
341 cd01854 YjeQ_engC YjeQ/EngC. 97.8 9.3E-05 2E-09 68.9 8.1 80 51-150 76-155 (287)
342 KOG1673 Ras GTPases [General f 97.8 0.00011 2.3E-09 60.1 7.2 134 3-151 40-178 (205)
343 cd01899 Ygr210 Ygr210 subfamil 97.8 0.00029 6.4E-09 66.3 11.4 36 30-65 69-111 (318)
344 PRK05306 infB translation init 97.7 0.0012 2.6E-08 69.2 16.3 179 35-262 594-778 (787)
345 PRK12288 GTPase RsgA; Reviewed 97.7 0.00019 4.2E-09 68.4 9.0 82 51-150 118-199 (347)
346 cd00066 G-alpha G protein alph 97.7 0.00018 4E-09 67.9 8.6 136 12-150 143-302 (317)
347 PRK13796 GTPase YqeH; Provisio 97.6 0.0003 6.6E-09 67.7 9.4 92 45-152 60-152 (365)
348 COG0536 Obg Predicted GTPase [ 97.6 0.00051 1.1E-08 63.7 9.9 110 28-152 205-326 (369)
349 PRK01889 GTPase RsgA; Reviewed 97.6 0.00022 4.9E-09 68.4 7.9 79 51-150 110-188 (356)
350 cd03110 Fer4_NifH_child This p 97.5 0.00062 1.3E-08 58.6 8.6 65 28-102 91-155 (179)
351 smart00275 G_alpha G protein a 97.5 0.00028 6.1E-09 67.3 7.0 90 12-102 166-263 (342)
352 TIGR00073 hypB hydrogenase acc 97.5 0.00028 6.2E-09 62.4 6.6 97 29-150 102-198 (207)
353 TIGR02836 spore_IV_A stage IV 97.5 0.00093 2E-08 64.0 10.1 84 16-102 69-192 (492)
354 KOG4252 GTP-binding protein [S 97.5 0.00011 2.4E-09 61.4 3.5 105 28-151 67-173 (246)
355 PF00350 Dynamin_N: Dynamin fa 97.4 0.0002 4.3E-09 60.9 5.0 66 28-100 99-168 (168)
356 cd01853 Toc34_like Toc34-like 97.4 0.0025 5.3E-08 58.0 12.3 83 15-103 64-162 (249)
357 KOG0077 Vesicle coat complex C 97.4 0.00097 2.1E-08 55.3 8.5 82 17-105 51-136 (193)
358 COG1162 Predicted GTPases [Gen 97.3 0.00099 2.1E-08 61.3 8.3 83 51-151 77-159 (301)
359 COG0532 InfB Translation initi 97.2 0.016 3.5E-07 57.0 15.6 74 186-261 418-496 (509)
360 KOG1490 GTP-binding protein CR 97.2 0.0013 2.9E-08 63.7 7.9 114 23-150 208-332 (620)
361 KOG2486 Predicted GTPase [Gene 97.2 0.00085 1.8E-08 60.5 6.2 125 13-151 169-308 (320)
362 cd03702 IF2_mtIF2_II This fami 97.2 0.0036 7.8E-08 47.8 8.8 72 184-261 3-78 (95)
363 TIGR00101 ureG urease accessor 97.2 0.0016 3.5E-08 57.1 7.7 98 29-151 91-188 (199)
364 COG5192 BMS1 GTP-binding prote 97.1 0.005 1.1E-07 60.5 10.9 99 28-143 111-210 (1077)
365 PF06858 NOG1: Nucleolar GTP-b 97.0 0.0018 3.9E-08 43.9 5.2 51 46-101 5-58 (58)
366 cd04178 Nucleostemin_like Nucl 97.0 0.0023 5E-08 54.8 6.9 40 55-102 1-42 (172)
367 PRK09602 translation-associate 96.9 0.0058 1.3E-07 59.4 9.8 35 30-64 72-113 (396)
368 PF09173 eIF2_C: Initiation fa 96.9 0.01 2.2E-07 44.3 8.5 74 272-373 3-88 (88)
369 KOG1707 Predicted Ras related/ 96.8 0.0018 4E-08 63.9 5.5 133 4-151 30-167 (625)
370 TIGR00991 3a0901s02IAP34 GTP-b 96.8 0.011 2.4E-07 55.0 10.2 75 23-103 79-166 (313)
371 KOG1486 GTP-binding protein DR 96.8 0.0027 5.8E-08 56.4 5.7 52 16-67 95-153 (364)
372 KOG0448 Mitofusin 1 GTPase, in 96.8 0.0053 1.2E-07 61.8 8.4 65 31-103 207-274 (749)
373 PF04548 AIG1: AIG1 family; I 96.7 0.01 2.3E-07 52.6 9.3 106 14-127 33-154 (212)
374 cd03703 aeIF5B_II aeIF5B_II: T 96.7 0.016 3.4E-07 45.2 8.8 74 185-260 4-92 (110)
375 KOG0096 GTPase Ran/TC4/GSP1 (n 96.7 0.0024 5.3E-08 54.2 4.4 102 30-151 59-161 (216)
376 TIGR00491 aIF-2 translation in 96.6 0.047 1E-06 55.9 14.4 75 188-263 473-550 (590)
377 cd03701 IF2_IF5B_II IF2_IF5B_I 96.6 0.017 3.7E-07 44.2 8.5 58 184-243 3-63 (95)
378 KOG1954 Endocytosis/signaling 96.6 0.01 2.2E-07 55.6 8.0 68 30-106 147-225 (532)
379 TIGR00064 ftsY signal recognit 96.5 0.017 3.6E-07 53.4 9.3 94 28-150 153-259 (272)
380 cd02038 FleN-like FleN is a me 96.4 0.021 4.5E-07 47.0 8.7 64 30-102 45-109 (139)
381 PF05049 IIGP: Interferon-indu 96.4 0.0077 1.7E-07 57.6 6.7 106 25-145 80-202 (376)
382 KOG4423 GTP-binding protein-li 96.4 0.0019 4.1E-08 54.7 2.2 110 25-151 67-186 (229)
383 KOG0082 G-protein alpha subuni 96.4 0.023 5E-07 53.7 9.7 136 12-150 177-335 (354)
384 PRK10416 signal recognition pa 96.3 0.023 5.1E-07 53.6 9.4 94 28-150 195-301 (318)
385 cd02036 MinD Bacterial cell di 96.3 0.022 4.7E-07 48.7 8.5 63 31-102 64-126 (179)
386 COG3640 CooC CO dehydrogenase 96.2 0.005 1.1E-07 54.4 3.8 66 27-102 131-197 (255)
387 KOG2484 GTPase [General functi 96.0 0.025 5.4E-07 53.7 7.8 62 34-102 126-189 (435)
388 PRK10463 hydrogenase nickel in 96.0 0.0074 1.6E-07 55.7 4.2 48 93-150 233-280 (290)
389 KOG3883 Ras family small GTPas 96.0 0.059 1.3E-06 44.3 8.8 100 30-149 60-165 (198)
390 cd02037 MRP-like MRP (Multiple 96.0 0.025 5.5E-07 48.1 7.1 66 28-102 66-133 (169)
391 PRK14974 cell division protein 96.0 0.037 8E-07 52.5 8.8 94 28-150 221-321 (336)
392 PF00503 G-alpha: G-protein al 95.9 0.012 2.7E-07 57.2 5.6 89 12-102 217-315 (389)
393 KOG0410 Predicted GTP binding 95.9 0.017 3.7E-07 53.4 5.7 107 17-151 212-333 (410)
394 COG0378 HypB Ni2+-binding GTPa 95.8 0.014 3E-07 50.2 4.6 94 30-150 97-192 (202)
395 TIGR01425 SRP54_euk signal rec 95.8 0.033 7.1E-07 54.5 7.8 64 28-102 181-251 (429)
396 PF00448 SRP54: SRP54-type pro 95.7 0.034 7.3E-07 48.7 6.9 65 28-102 82-152 (196)
397 cd03111 CpaE_like This protein 95.7 0.034 7.4E-07 43.4 6.2 60 31-99 44-106 (106)
398 KOG1487 GTP-binding protein DR 95.6 0.0076 1.7E-07 53.8 2.5 52 16-67 92-150 (358)
399 cd03115 SRP The signal recogni 95.6 0.057 1.2E-06 46.0 7.6 64 28-102 81-151 (173)
400 KOG0099 G protein subunit Galp 95.4 0.054 1.2E-06 48.6 6.9 106 12-125 184-299 (379)
401 PF03308 ArgK: ArgK protein; 95.4 0.15 3.3E-06 46.1 9.9 103 26-152 118-223 (266)
402 PRK04004 translation initiatio 95.3 0.088 1.9E-06 54.0 9.2 74 188-262 475-551 (586)
403 TIGR01007 eps_fam capsular exo 95.2 0.074 1.6E-06 46.7 7.5 67 28-102 126-192 (204)
404 COG1149 MinD superfamily P-loo 95.2 0.076 1.6E-06 48.1 7.2 63 30-102 164-226 (284)
405 cd03114 ArgK-like The function 95.1 0.051 1.1E-06 45.3 5.8 59 28-101 90-148 (148)
406 PHA02518 ParA-like protein; Pr 95.1 0.15 3.2E-06 44.8 8.9 69 28-102 75-145 (211)
407 TIGR01969 minD_arch cell divis 95.1 0.072 1.6E-06 48.2 7.1 66 28-102 107-172 (251)
408 COG1703 ArgK Putative periplas 95.0 0.089 1.9E-06 48.4 7.1 104 27-152 141-247 (323)
409 PTZ00258 GTP-binding protein; 94.7 0.063 1.4E-06 51.9 5.9 51 14-64 52-126 (390)
410 PF00735 Septin: Septin; Inte 94.6 0.58 1.3E-05 43.4 11.8 104 13-129 44-177 (281)
411 KOG1424 Predicted GTP-binding 94.6 0.18 4E-06 49.5 8.6 79 45-143 166-244 (562)
412 KOG1144 Translation initiation 94.6 0.77 1.7E-05 47.3 13.1 53 196-248 953-1007(1064)
413 COG1161 Predicted GTPases [Gen 94.6 0.12 2.6E-06 48.9 7.4 95 33-150 13-108 (322)
414 cd01900 YchF YchF subfamily. 94.5 0.083 1.8E-06 48.7 5.9 52 14-65 29-104 (274)
415 TIGR00993 3a0901s04IAP86 chlor 94.5 0.5 1.1E-05 48.5 11.6 78 20-103 156-249 (763)
416 cd02035 ArsA ArsA ATPase funct 94.3 0.29 6.4E-06 43.4 9.0 67 30-103 114-183 (217)
417 CHL00175 minD septum-site dete 94.1 0.11 2.5E-06 48.0 6.0 65 29-102 126-190 (281)
418 PRK14845 translation initiatio 94.0 0.19 4.1E-06 54.6 8.2 76 188-263 931-1008(1049)
419 TIGR01968 minD_bact septum sit 94.0 0.13 2.8E-06 46.8 6.1 65 29-102 111-175 (261)
420 PRK11889 flhF flagellar biosyn 93.9 0.11 2.5E-06 50.0 5.7 64 29-102 320-389 (436)
421 KOG0447 Dynamin-like GTP bindi 93.9 0.18 3.9E-06 49.8 7.1 83 14-102 393-491 (980)
422 PRK09601 GTP-binding protein Y 93.9 0.14 3E-06 49.0 6.3 52 14-65 33-108 (364)
423 PRK06731 flhF flagellar biosyn 93.9 0.13 2.7E-06 47.4 5.8 64 29-102 154-223 (270)
424 cd03112 CobW_like The function 93.8 0.092 2E-06 44.2 4.4 65 29-102 86-158 (158)
425 KOG1547 Septin CDC10 and relat 93.5 0.66 1.4E-05 41.4 9.2 100 18-129 90-219 (336)
426 KOG3887 Predicted small GTPase 93.5 0.37 8.1E-06 42.9 7.7 107 30-143 75-187 (347)
427 PRK14722 flhF flagellar biosyn 93.5 0.13 2.8E-06 49.5 5.4 66 27-102 213-293 (374)
428 PF01656 CbiA: CobQ/CobB/MinD/ 93.5 0.3 6.5E-06 42.1 7.3 65 29-102 94-160 (195)
429 PRK13849 putative crown gall t 93.3 0.32 7E-06 43.7 7.4 65 28-102 82-152 (231)
430 KOG0780 Signal recognition par 93.3 0.23 4.9E-06 47.3 6.3 66 25-102 179-252 (483)
431 PRK00771 signal recognition pa 93.2 0.26 5.7E-06 48.5 7.1 63 29-102 175-244 (437)
432 TIGR00959 ffh signal recogniti 92.9 0.31 6.7E-06 47.9 7.1 64 28-102 181-251 (428)
433 PRK12724 flagellar biosynthesi 92.5 0.29 6.4E-06 47.7 6.2 65 28-102 298-371 (432)
434 PRK12726 flagellar biosynthesi 92.3 0.23 5.1E-06 47.7 5.2 65 28-102 284-354 (407)
435 PRK12723 flagellar biosynthesi 91.8 0.38 8.2E-06 46.7 6.1 65 28-102 253-324 (388)
436 COG0541 Ffh Signal recognition 91.4 0.64 1.4E-05 45.1 7.1 65 26-102 179-251 (451)
437 PRK10867 signal recognition pa 91.2 0.54 1.2E-05 46.3 6.6 64 28-102 182-252 (433)
438 COG5019 CDC3 Septin family pro 91.2 1.4 3.1E-05 41.7 9.0 104 13-128 63-196 (373)
439 PRK12727 flagellar biosynthesi 91.1 0.58 1.3E-05 47.0 6.7 64 28-102 427-496 (559)
440 KOG2423 Nucleolar GTPase [Gene 91.1 0.44 9.6E-06 45.4 5.5 49 46-102 206-256 (572)
441 COG0552 FtsY Signal recognitio 90.8 0.88 1.9E-05 42.7 7.1 64 28-102 220-296 (340)
442 cd02032 Bchl_like This family 90.8 0.6 1.3E-05 42.8 6.2 67 28-102 114-184 (267)
443 TIGR03815 CpaE_hom_Actino heli 90.6 0.98 2.1E-05 42.7 7.6 65 28-102 203-267 (322)
444 PRK13505 formate--tetrahydrofo 90.4 0.64 1.4E-05 46.6 6.2 77 39-128 307-402 (557)
445 COG1419 FlhF Flagellar GTP-bin 89.7 0.72 1.6E-05 44.5 5.8 66 28-103 280-351 (407)
446 PRK05703 flhF flagellar biosyn 89.7 0.77 1.7E-05 45.2 6.2 65 28-102 298-369 (424)
447 TIGR03371 cellulose_yhjQ cellu 88.9 2 4.4E-05 38.6 8.0 63 30-102 115-180 (246)
448 PRK10037 cell division protein 88.4 2.5 5.4E-05 38.3 8.3 60 28-102 116-175 (250)
449 PRK11670 antiporter inner memb 87.8 1.4 2.9E-05 42.7 6.4 69 27-102 213-281 (369)
450 KOG3905 Dynein light intermedi 87.8 1.1 2.4E-05 41.7 5.4 57 86-149 219-280 (473)
451 TIGR03029 EpsG chain length de 87.5 2 4.4E-05 39.4 7.2 64 28-99 211-274 (274)
452 PRK10818 cell division inhibit 87.4 1.7 3.8E-05 39.8 6.6 64 29-102 113-185 (270)
453 PRK13185 chlL protochlorophyll 87.3 1.9 4E-05 39.6 6.8 67 28-102 116-186 (270)
454 cd02042 ParA ParA and ParB of 87.2 1.9 4.2E-05 32.9 5.9 35 30-66 40-74 (104)
455 PRK14723 flhF flagellar biosyn 87.2 1.5 3.3E-05 46.1 6.7 65 28-102 262-335 (767)
456 KOG2655 Septin family protein 87.2 2.5 5.4E-05 40.3 7.5 104 11-127 58-191 (366)
457 KOG1145 Mitochondrial translat 87.0 3.7 8.1E-05 41.1 8.8 179 35-262 478-666 (683)
458 PRK14721 flhF flagellar biosyn 86.8 1.2 2.6E-05 43.7 5.3 66 27-102 267-338 (420)
459 cd00550 ArsA_ATPase Oxyanion-t 86.5 4.6 9.9E-05 36.8 8.8 68 28-102 123-201 (254)
460 cd02117 NifH_like This family 86.2 2 4.3E-05 37.9 6.1 68 27-102 114-187 (212)
461 CHL00072 chlL photochlorophyll 85.9 1.5 3.3E-05 40.8 5.4 67 28-102 114-184 (290)
462 TIGR01281 DPOR_bchL light-inde 85.9 1.5 3.1E-05 40.3 5.3 67 28-102 114-184 (268)
463 KOG1534 Putative transcription 85.3 2.7 6E-05 36.8 6.2 65 29-102 97-176 (273)
464 TIGR01005 eps_transp_fam exopo 84.6 2.3 5.1E-05 45.2 6.8 67 28-102 654-720 (754)
465 COG0012 Predicted GTPase, prob 84.6 9.2 0.0002 36.6 9.9 35 31-65 68-109 (372)
466 COG0455 flhG Antiactivator of 84.2 5.3 0.00012 36.6 8.0 64 30-102 113-178 (262)
467 PHA02519 plasmid partition pro 83.9 3.6 7.8E-05 40.1 7.2 36 28-65 233-268 (387)
468 PRK13705 plasmid-partitioning 83.5 3.6 7.8E-05 40.1 7.0 36 28-65 233-268 (388)
469 PF05783 DLIC: Dynein light in 83.5 1.9 4.1E-05 43.0 5.1 55 88-149 195-254 (472)
470 cd01851 GBP Guanylate-binding 83.3 14 0.0003 32.9 10.2 38 28-65 58-103 (224)
471 PRK06995 flhF flagellar biosyn 81.9 3.1 6.8E-05 41.6 6.0 67 26-102 331-403 (484)
472 PRK13869 plasmid-partitioning 81.2 4.5 9.7E-05 39.6 6.8 36 28-65 250-285 (405)
473 PRK00090 bioD dithiobiotin syn 81.0 2.9 6.2E-05 37.1 5.0 68 28-102 102-174 (222)
474 TIGR03453 partition_RepA plasm 80.6 3.6 7.8E-05 40.0 5.9 36 28-65 233-268 (387)
475 COG4963 CpaE Flp pilus assembl 80.0 6.1 0.00013 37.7 6.9 67 28-103 216-284 (366)
476 PRK09841 cryptic autophosphory 78.2 7 0.00015 41.5 7.5 67 28-102 639-705 (726)
477 KOG2485 Conserved ATP/GTP bind 76.1 6.7 0.00014 36.6 5.7 64 31-106 23-87 (335)
478 TIGR03018 pepcterm_TyrKin exop 75.7 10 0.00022 33.2 6.9 48 31-86 150-197 (207)
479 TIGR00347 bioD dethiobiotin sy 75.5 8.3 0.00018 32.3 6.0 57 28-91 98-159 (166)
480 COG0482 TrmU Predicted tRNA(5- 75.4 21 0.00046 34.1 9.0 114 235-376 233-355 (356)
481 PRK13231 nitrogenase reductase 74.3 9.3 0.0002 34.8 6.4 68 28-102 112-180 (264)
482 KOG3022 Predicted ATPase, nucl 73.7 5.1 0.00011 36.6 4.3 66 25-98 152-218 (300)
483 cd02040 NifH NifH gene encodes 73.7 8.2 0.00018 35.2 5.9 38 28-65 115-153 (270)
484 PRK11519 tyrosine kinase; Prov 73.5 11 0.00025 39.8 7.6 67 28-102 634-700 (719)
485 PF10609 ParA: ParA/MinD ATPas 73.3 16 0.00034 26.9 6.1 57 32-97 3-60 (81)
486 PF08438 MMR_HSR1_C: GTPase of 71.6 2.4 5.2E-05 33.1 1.5 41 96-151 1-41 (109)
487 KOG4181 Uncharacterized conser 66.7 61 0.0013 30.9 9.7 73 44-127 289-377 (491)
488 COG1908 FrhD Coenzyme F420-red 64.8 32 0.00069 27.2 6.4 70 80-152 44-115 (132)
489 COG1192 Soj ATPases involved i 64.4 19 0.00041 32.6 6.2 69 28-102 118-189 (259)
490 PF02492 cobW: CobW/HypB/UreG, 63.3 20 0.00044 30.5 5.9 65 29-102 84-153 (178)
491 COG1326 Uncharacterized archae 63.2 17 0.00037 31.2 5.1 55 205-262 74-129 (201)
492 PRK13232 nifH nitrogenase redu 63.1 14 0.00031 33.8 5.2 38 28-65 115-153 (273)
493 TIGR00092 GTP-binding protein 62.7 17 0.00037 35.0 5.7 36 30-65 67-109 (368)
494 TIGR01287 nifH nitrogenase iro 60.7 19 0.00042 32.9 5.6 38 28-65 114-152 (275)
495 TIGR02475 CobW cobalamin biosy 60.1 61 0.0013 31.0 9.0 38 29-66 92-136 (341)
496 TIGR02016 BchX chlorophyllide 59.5 16 0.00034 34.1 4.8 69 28-102 121-194 (296)
497 KOG1980 Uncharacterized conser 59.0 26 0.00057 35.8 6.3 69 44-123 132-200 (754)
498 KOG1533 Predicted GTPase [Gene 58.9 62 0.0013 29.2 7.9 71 28-102 95-175 (290)
499 PF07015 VirC1: VirC1 protein; 57.7 57 0.0012 29.2 7.7 68 28-102 82-152 (231)
500 COG0523 Putative GTPases (G3E 57.2 22 0.00049 33.6 5.4 90 30-141 85-184 (323)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-86 Score=611.59 Aligned_cols=370 Identities=44% Similarity=0.791 Sum_probs=357.6
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||+||+++||||||+|++.+...|+++.+.|+++|||||+||+++|+.++++||+|||||||..+.||+||..++||+|
T Consensus 56 fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE 135 (428)
T COG5256 56 FAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE 135 (428)
T ss_pred EEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+.+++.+|+.++||++||||+ .+|+++||+++++++..+++.+||++. +++|||+||++|+|+.+..+ .+|||+
T Consensus 136 H~~La~tlGi~~lIVavNKMD~--v~wde~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~~s~--~~pWY~ 210 (428)
T COG5256 136 HAFLARTLGIKQLIVAVNKMDL--VSWDEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTKKSE--NMPWYK 210 (428)
T ss_pred HHHHHHhcCCceEEEEEEcccc--cccCHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccccCc--CCcCcc
Confidence 9999999999999999999999 889999999999999999999999854 68999999999999999774 799999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
||+|++.|+.+.+|.+..+.|||++|.++| .+.|++..|||++|.|++||++++.|.+...+|+||++|+++.++|.|
T Consensus 211 GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~ 290 (428)
T COG5256 211 GPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEP 290 (428)
T ss_pred CChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCC
Confidence 999999999999999999999999999999 589999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecC
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLK 317 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~ 317 (383)
||.++++++|++.+|+++|++++++++++..+.+|.|++.+ +.+ ..|.+||++++|+|+...+|++.++..++|+.
T Consensus 291 GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~s~~f~a~i~v---l~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~ 367 (428)
T COG5256 291 GDNVGFNVRGVEKNDIRRGDVIGHSDNPPTVSPEFTAQIIV---LWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPR 367 (428)
T ss_pred CCeEEEEecCCchhccCCccEeccCCCCcccccceEEEEEE---EecCccccCCCccEEEecccceeeeHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999 555 78999999999999999999999999999999
Q ss_pred CCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 016750 318 TKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 378 (383)
Q Consensus 318 ~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~ 378 (383)
||+..+++|.++++|+.+.+++++.+|+|++.++++|.||||.|||.|+|||+|+|.++.+
T Consensus 368 t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~~ 428 (428)
T COG5256 368 TGKKLEENPQFLKRGDAAIVKIEPEKPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVKK 428 (428)
T ss_pred cccccccChhhhhcCceEEEEEEecCceEeeecccCCccceEEEEeCCCeEEeEEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999998763
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.6e-78 Score=590.07 Aligned_cols=375 Identities=35% Similarity=0.634 Sum_probs=351.0
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||+||.+++||+||+|+++....|+++++.++|+|||||++|.++|+.+++.+|+||||||+..|.++++++..+|+++
T Consensus 56 ~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~e 135 (447)
T PLN00043 56 YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTRE 135 (447)
T ss_pred hhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998888876789999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+.+++.+|+|++|+++||||+...+|++++|+++.++++.+++..||.+ .+++|+|+||++|+|+.+..+ .++||+
T Consensus 136 h~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~-~~~~~ipiSa~~G~ni~~~~~--~~~Wy~ 212 (447)
T PLN00043 136 HALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP-DKIPFVPISGFEGDNMIERST--NLDWYK 212 (447)
T ss_pred HHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCc-ccceEEEEecccccccccccc--CCcccc
Confidence 99999999998899999999985446788999999999999999999863 357899999999999988654 389999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
|++|++.|+.+++|.+..+.||||+|+++| ++.|+|++|+|++|+|++||+|.++|++..++|+||++++.++++|.|
T Consensus 213 g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~a 292 (447)
T PLN00043 213 GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALP 292 (447)
T ss_pred hHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecC
Confidence 999999999998888888999999999999 478999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCC-CCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeec
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVA-KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDL 316 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~-~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~ 316 (383)
||+|+++|++++..++++|++|+++. .|+..+.+|+|++.|+ ++ .++..||++.+|+++.+++|+|.+|.+++|.
T Consensus 293 Gd~v~i~l~~~~~~~i~rG~vl~~~~~~p~~~~~~F~A~i~~l---~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~ 369 (447)
T PLN00043 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIM---NHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDR 369 (447)
T ss_pred CCeEEEEECCCCHhhCCCccEEccCCCCCCccccEEEEEEEEE---CCCCCCCCCCeEEEEEccCEEEEEEEEeEEEecc
Confidence 99999999999989999999999974 6678899999999994 45 7789999999999999999999999999999
Q ss_pred CCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCCC
Q 016750 317 KTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 381 (383)
Q Consensus 317 ~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~~~ 381 (383)
+||+..+++|++|++|+.+.|+|++.+|+|+|+|+++|.||||+|||+|.|||+|+|+++....+
T Consensus 370 ~t~~~~~~~p~~l~~~~~a~v~i~~~~pi~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~~~ 434 (447)
T PLN00043 370 RSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434 (447)
T ss_pred CCccccccCcccccCCCEEEEEEEECCcEEEEecccCCCCceEEEEECCCeEEEEEEEEEeccCC
Confidence 99988888999999999999999999999999999999999999999999999999999886543
No 3
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.3e-77 Score=583.91 Aligned_cols=375 Identities=37% Similarity=0.693 Sum_probs=351.9
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||++|++++||+||+|+++++..++++++.++|+|||||.+|+++|+.+++.+|+|+||||+..|++|.+|+..+||++
T Consensus 56 ~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e 135 (446)
T PTZ00141 56 YAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE 135 (446)
T ss_pred hhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999987789999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+.++..+|+|++|+++||||++.++|++++|+++.+++..+++.+++.. .++++||+|+++|+|+.+..+ .++||+
T Consensus 136 h~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~-~~~~~ipiSa~~g~ni~~~~~--~~~Wy~ 212 (446)
T PTZ00141 136 HALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNP-EKVPFIPISGWQGDNMIEKSD--NMPWYK 212 (446)
T ss_pred HHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCc-ccceEEEeecccCCCcccCCC--CCcccc
Confidence 99999999999899999999965478999999999999999999999863 358999999999999987654 589999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
|++|++.|+.+++|.+..++|+||+|+++| ++.|++++|+|.+|+|++||+|.++|++..++|++|++++.++++|.|
T Consensus 213 G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~a 292 (446)
T PTZ00141 213 GPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVP 292 (446)
T ss_pred hHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECC
Confidence 999999999988888888999999999999 578999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCC-CCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeec
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVA-KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDL 316 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~-~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~ 316 (383)
||+|+++|++++..++++|++|++++ .|+..+++|+|++.| +++ .++..||++++|+++.+++|+|..|.+++|+
T Consensus 293 G~~v~i~L~~i~~~~v~rG~vl~~~~~~p~~~~~~f~a~i~~---l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~ 369 (446)
T PTZ00141 293 GDNVGFNVKNVSVKDIKRGYVASDSKNDPAKECADFTAQVIV---LNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDR 369 (446)
T ss_pred CCEEEEEECCCCHHHcCCceEEecCCCCCCccceEEEEEEEE---ECCCCccCCCCeEEEEEeceEEEEEEEEEEEEecc
Confidence 99999999999999999999999985 566778999999999 444 6799999999999999999999999999999
Q ss_pred CCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCCC
Q 016750 317 KTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 381 (383)
Q Consensus 317 ~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~~~ 381 (383)
+|++..+++|++|++|+.+.|+|++++|+|+++|++++.+|||+||+.|.|+|+|.|+++.+.+-
T Consensus 370 ~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~~ 434 (446)
T PTZ00141 370 RSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKEG 434 (446)
T ss_pred ccccccCCCCcEECCCCEEEEEEEECCceEEeecccCCCCccEEEEECCCEEEEEEEEEEecCCC
Confidence 99988888999999999999999999999999999999999999999999999999999886643
No 4
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-75 Score=531.37 Aligned_cols=373 Identities=59% Similarity=0.974 Sum_probs=361.7
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
++|.||+++|||++|.|++.+..+|++..+.|+++|+|||..|..+|+.++++||+++||++|..|.||.||+.++||++
T Consensus 128 lsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTRE 207 (501)
T KOG0459|consen 128 LSWALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE 207 (501)
T ss_pred EEEEEcCchhhhhccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|..+++..++.|+|+++||||-+.++|+++||+++.+.+..+|+.+||++..+..++|+|+.+|.++.+..+ ..+|||.
T Consensus 208 ha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~-s~cpwy~ 286 (501)
T KOG0459|consen 208 HAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD-SVCPWYK 286 (501)
T ss_pred HHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc-ccCCccc
Confidence 999999999999999999999999999999999999999999999999988888999999999999999877 6799999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGE 240 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~ 240 (383)
|+++++.|+.++...+..++|++++|.+-|++.|+|+.|+|+||++++||.+.++|.+..+.|.+|...+..++.+.||+
T Consensus 287 gp~fl~~ld~l~~~~R~~~GP~~~pI~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGe 366 (501)
T KOG0459|consen 287 GPIFLEYLDELPHLERILNGPIRCPVANKYKDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGE 366 (501)
T ss_pred CCccceehhccCcccccCCCCEEeehhhhccccceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCC
Q 016750 241 NLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTK 319 (383)
Q Consensus 241 ~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~ 319 (383)
.+-|.|+|++.+|+..|.|||++.++..+.+.|.|+|.+ +.+ +.|.+||++++|+|+...+|.| .+...+|++||
T Consensus 367 nvk~rlkgieeedi~~GfiL~~~~n~~~s~~~F~aqi~I---lE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg 442 (501)
T KOG0459|consen 367 NVKLRLKGIEEEDISPGFILCSPNNPCKSGRTFDAQIVI---LEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTG 442 (501)
T ss_pred ceEEEecccchhhccCceEEecCCCccccccEEEEEEEE---EecCceeccCcceEeeeeeehhheee-eeeeeeccccc
Confidence 999999999999999999999999999999999999999 566 7899999999999999999999 77899999999
Q ss_pred cccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 016750 320 KPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 378 (383)
Q Consensus 320 ~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~ 378 (383)
+..++.|++++.|+.+.++|+...|||+++|.++|.+|||.|||+|.|||+|+|+++.+
T Consensus 443 ~ksKkrprFvkq~~~~iarl~t~~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 443 EKSKKRPRFVKQGQKCIARLETEGPICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred ccccCCCeeecCCcEEEEEEecCCcEehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999864
No 5
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-74 Score=547.50 Aligned_cols=372 Identities=37% Similarity=0.687 Sum_probs=354.0
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||++|.++||||||+|++++..+|+.+.+.++|+|+|||.+|+.+|+.++.+||+|+|||||+.+.||+||+.++||+|
T Consensus 226 yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE 305 (603)
T KOG0458|consen 226 YAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE 305 (603)
T ss_pred eeEEeccchhhhhcceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHH-HhcCCCCCCCceEEEccccccccccccc-cCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRV-DKSLCPW 158 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~iSa~~g~~i~~~~-~~~~~~w 158 (383)
|+.+++.+|+.++||++||||+ ++|+++||+++++.+..+| +.+||. ..++.|||+|+++|+|+.... +..+..|
T Consensus 306 ha~llr~Lgi~qlivaiNKmD~--V~Wsq~RF~eIk~~l~~fL~~~~gf~-es~v~FIPiSGl~GeNL~k~~~~~~l~~W 382 (603)
T KOG0458|consen 306 HALLLRSLGISQLIVAINKMDL--VSWSQDRFEEIKNKLSSFLKESCGFK-ESSVKFIPISGLSGENLIKIEQENELSQW 382 (603)
T ss_pred HHHHHHHcCcceEEEEeecccc--cCccHHHHHHHHHHHHHHHHHhcCcc-cCCcceEecccccCCcccccccchhhhhh
Confidence 9999999999999999999999 9999999999999999999 889998 446799999999999998863 3467899
Q ss_pred CCcccHHHHhhccCCCCCCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceec
Q 016750 159 WNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHA 236 (383)
Q Consensus 159 ~~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a 236 (383)
|+||+|++.|+.+.+|.+..+.||++.|.++++ ..|..++|+|++|.|+.||+|+++|+...+.|++|.+++++...|
T Consensus 383 Y~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a 462 (603)
T KOG0458|consen 383 YKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWA 462 (603)
T ss_pred hcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeE
Confidence 999999999999988888899999999999996 467789999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCccCceeeEEEe-cCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEee
Q 016750 237 GPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQID 315 (383)
Q Consensus 237 ~aG~~v~l~l~g~~~~~i~~G~vl~-~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d 315 (383)
.|||.|.+.|.++..+.++.|++++ .+..+.+.+..|.+++.||+. +.++..|.+..+|+|+...+|++.++...++
T Consensus 463 ~AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~~i~~~~~f~~~~~~f~~--~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~ 540 (603)
T KOG0458|consen 463 VAGDNVSLKLPGILPNLVQVGDIADSGPQFPISKTTRFVARITTFDI--NLPITKGSPLILHFGSLSEPAVLKKLTSSIN 540 (603)
T ss_pred eeCCEEEEecCccChhhcccceeeecCCCccccceeEEEEEEEEeec--cccccCCcceEEEeccccchhhhhhhhhhhc
Confidence 9999999999999999999999999 666788888999999999654 4678899999999999999999999999999
Q ss_pred cCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 016750 316 LKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 377 (383)
Q Consensus 316 ~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~ 377 (383)
+.||+..+++|++|.+|+.|.++++.++|||+++|.+++++|||++|..|+|||.|+|+++.
T Consensus 541 k~t~~i~kk~pR~L~~~~~a~vele~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 541 KSTGEIVKKKPRCLTSNQSAIVELETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred cCCCchhhcccceeccCceeeeeccccCchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 6
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.7e-72 Score=550.05 Aligned_cols=364 Identities=37% Similarity=0.700 Sum_probs=339.4
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC--CccccccccCCch
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK--GEFETGFEKGGQT 78 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~--g~~~~~~~~~~~~ 78 (383)
|+|++|++++||+||+|+|..+..+++++++++|||||||++|.+++..+++.+|++|+|||+++ +.. .++
T Consensus 55 ~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~-------~~~ 127 (425)
T PRK12317 55 FAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVM-------PQT 127 (425)
T ss_pred hhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCC-------cch
Confidence 68999999999999999999999999999999999999999999999999999999999999998 553 789
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCC
Q 016750 79 REHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPW 158 (383)
Q Consensus 79 ~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w 158 (383)
++|+.++..++++++++++||+|+ .++++++++.+.+++..+++..++.. ..++++|+||++|+|+.++.+ .++|
T Consensus 128 ~~~~~~~~~~~~~~iivviNK~Dl--~~~~~~~~~~~~~~i~~~l~~~g~~~-~~~~ii~iSA~~g~gi~~~~~--~~~w 202 (425)
T PRK12317 128 REHVFLARTLGINQLIVAINKMDA--VNYDEKRYEEVKEEVSKLLKMVGYKP-DDIPFIPVSAFEGDNVVKKSE--NMPW 202 (425)
T ss_pred HHHHHHHHHcCCCeEEEEEEcccc--ccccHHHHHHHHHHHHHHHHhhCCCc-CcceEEEeecccCCCcccccc--CCCc
Confidence 999999999998779999999999 55566778888899999998888752 246899999999999999875 4899
Q ss_pred CCcccHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceec
Q 016750 159 WNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHA 236 (383)
Q Consensus 159 ~~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a 236 (383)
|+|++|++.|+.++++.+..++||+|+|+++| ++.|+|++|+|.+|+|++||+|.++|++..++|+||+.+++++++|
T Consensus 203 y~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a 282 (425)
T PRK12317 203 YNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQA 282 (425)
T ss_pred ccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEE
Confidence 99999999999998888888999999999999 5789999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEee
Q 016750 237 GPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQID 315 (383)
Q Consensus 237 ~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d 315 (383)
.|||+|+++|++++..++++|++|++++.++..+++|+|++.| +++ .++.+||++.+|+++.+++|+|..|.+.+|
T Consensus 283 ~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~---l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d 359 (425)
T PRK12317 283 EPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVAEEFTAQIVV---LQHPSAITVGYTPVFHAHTAQVACTFEELVKKLD 359 (425)
T ss_pred CCCCeEEEEECCCCHHHccCccEecCCCCCCCcccEEEEEEEE---ECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEec
Confidence 9999999999999999999999999988778889999999999 444 689999999999999999999999999999
Q ss_pred cCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 016750 316 LKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 379 (383)
Q Consensus 316 ~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~ 379 (383)
++|++..+++|++|++|+.+.|+|+|++|+|+++|++++.+|||+||++|+|+|+|+|+++.++
T Consensus 360 ~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 360 PRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPA 423 (425)
T ss_pred cccccccCCCCcEECCCCEEEEEEEECCeeEEEeCCcCCCCccEEEEECCCeEEEEEEEEeccC
Confidence 9999888889999999999999999999999999999999999999999999999999999865
No 7
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=1.6e-71 Score=544.31 Aligned_cols=367 Identities=36% Similarity=0.663 Sum_probs=339.9
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||++|++++||+||+|+|..+..+++++..++|||||||++|.+++..+++.+|+++||||++.+.++ ...++.+
T Consensus 56 ~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~~~~t~~ 131 (426)
T TIGR00483 56 FAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE----VQPQTRE 131 (426)
T ss_pred hhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc----cCCchHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998432 1368999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+.+++.++++++|+++||+|+ .++++++++++.+++..+++..++.. ..++++|+||++|.|+.++.. .++||+
T Consensus 132 ~~~~~~~~~~~~iIVviNK~Dl--~~~~~~~~~~~~~ei~~~~~~~g~~~-~~~~~i~iSA~~g~ni~~~~~--~~~w~~ 206 (426)
T TIGR00483 132 HAFLARTLGINQLIVAINKMDS--VNYDEEEFEAIKKEVSNLIKKVGYNP-DTVPFIPISAWNGDNVIKKSE--NTPWYK 206 (426)
T ss_pred HHHHHHHcCCCeEEEEEEChhc--cCccHHHHHHHHHHHHHHHHHcCCCc-ccceEEEeecccccccccccc--CCcccc
Confidence 9988888888779999999999 66667888889999999999888752 246899999999999999765 479999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
|++|++.|+.++++.+..++||+|+|+++| ++.|+|++|+|.+|+|++||.|.++|.+..++|+||++++.++++|.|
T Consensus 207 g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~a 286 (426)
T TIGR00483 207 GKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEP 286 (426)
T ss_pred chHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcC
Confidence 999999999998888888899999999999 578999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecC
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLK 317 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~ 317 (383)
||+|+++|++++..++++|++|++++.+++.+++|+|++.| +++ .++..||++++|+|+.+++|+|..|.+.+|++
T Consensus 287 G~~v~i~l~~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~ 363 (426)
T TIGR00483 287 GDNIGFNVRGVSKKDIRRGDVCGHPDNPPKVAKEFTAQIVV---LQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPR 363 (426)
T ss_pred CCEEEEEECCCChhhcccceEEecCCCCCceeeEEEEEEEE---ECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCc
Confidence 99999999999999999999999987778889999999999 444 68999999999999999999999999999999
Q ss_pred CCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 016750 318 TKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 379 (383)
Q Consensus 318 ~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~ 379 (383)
+++..+++|++|++|+.+.|+|+|++|+|+++|+++|.+|||+||++|+|||+|.|+++.++
T Consensus 364 t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~~ 425 (426)
T TIGR00483 364 TGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDPT 425 (426)
T ss_pred cccccCCCCceeCCCCEEEEEEEECCeeEEeecccCCCCccEEEEECCCEEEEEEEEEeeec
Confidence 99888899999999999999999999999999999999999999999999999999988753
No 8
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-71 Score=494.17 Aligned_cols=357 Identities=32% Similarity=0.509 Sum_probs=336.7
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
||.++|-+++|||.|||||+.+.+|.+++++|.+.|||||+.|.++|..|++-||+||++|||..|+. .||++
T Consensus 57 ~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-------~QTrR 129 (431)
T COG2895 57 LALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-------EQTRR 129 (431)
T ss_pred hhhhhhhhHHHHhcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-------HHhHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999986 69999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|..++..+|++|+++++||||| ++|++++|+++..+...+.+++++. ...+||+||+.|+|+...++ .+|||+
T Consensus 130 Hs~I~sLLGIrhvvvAVNKmDL--vdy~e~~F~~I~~dy~~fa~~L~~~---~~~~IPiSAl~GDNV~~~s~--~mpWY~ 202 (431)
T COG2895 130 HSFIASLLGIRHVVVAVNKMDL--VDYSEEVFEAIVADYLAFAAQLGLK---DVRFIPISALLGDNVVSKSE--NMPWYK 202 (431)
T ss_pred HHHHHHHhCCcEEEEEEeeecc--cccCHHHHHHHHHHHHHHHHHcCCC---cceEEechhccCCccccccc--CCCccc
Confidence 9999999999999999999999 9999999999999999999999987 66999999999999998755 699999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEcc--CCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~~--~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
||+|++.|+.+........+||||||+.+.+. .-+-+.|+|.+|++++||++.+.|+++..+|++|..++.++++|.+
T Consensus 203 GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~a 282 (431)
T COG2895 203 GPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASA 282 (431)
T ss_pred CccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccC
Confidence 99999999998877777788999999999853 2345899999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCC
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKT 318 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~ 318 (383)
|+.|++.|. +..|++||++++..+.++..+..|.|.++| +.+.++.+|..|.+.+++..+.++|..|.+++|.+|
T Consensus 283 G~aVtl~L~--deidisRGd~i~~~~~~~~~~~~f~A~vvW---m~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvnt 357 (431)
T COG2895 283 GEAVTLVLA--DEIDISRGDLIVAADAPPAVADAFDADVVW---MDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNT 357 (431)
T ss_pred CceEEEEEc--ceeecccCcEEEccCCCcchhhhcceeEEE---ecCCCCCCCceEEEEecceEEEEEeeeeEEEEeccc
Confidence 999999999 888999999999999999999999999999 777788999999999999999999999999999999
Q ss_pred CcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeC--CcEEEEEEEEEcCC
Q 016750 319 KKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE--GKTVAVGKVTELPT 378 (383)
Q Consensus 319 ~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~--~~tvg~G~V~~~~~ 378 (383)
.+.. .++.|..|+.+.|++.+++|+++++|.+++.+|+|||.|. |.|+|+|+|.+-..
T Consensus 358 l~~~--~a~~l~lN~Ig~v~i~~~~pi~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l~ 417 (431)
T COG2895 358 LEQE--GAESLPLNEIGRVRISFDKPIAFDAYAENRATGSFILIDRLTNGTVGAGMILASLS 417 (431)
T ss_pred cccc--cccccCCCcceEEEEecCCceeecccccCcccccEEEEEcCCCCceeceeeechhh
Confidence 8755 6788999999999999999999999999999999999998 78999999997653
No 9
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=8.5e-69 Score=520.11 Aligned_cols=352 Identities=30% Similarity=0.513 Sum_probs=324.0
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||+||++++||+||+|+|..+..+++++++++|+|||||++|.++|..++..+|++|+|||+..|+. +|+++
T Consensus 51 ~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-------~qt~~ 123 (406)
T TIGR02034 51 LALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-------EQTRR 123 (406)
T ss_pred eeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------cccHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999974 79999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+.++..++++++|+++||||+ .++++++++++.+++..+++.+++. +++++|+||++|+|++++.+ .++||.
T Consensus 124 ~~~~~~~~~~~~iivviNK~D~--~~~~~~~~~~i~~~~~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~ 196 (406)
T TIGR02034 124 HSYIASLLGIRHVVLAVNKMDL--VDYDEEVFENIKKDYLAFAEQLGFR---DVTFIPLSALKGDNVVSRSE--SMPWYS 196 (406)
T ss_pred HHHHHHHcCCCcEEEEEEeccc--ccchHHHHHHHHHHHHHHHHHcCCC---CccEEEeecccCCCCccccc--CCCccc
Confidence 9999999999889999999999 6666778888889998888888875 57899999999999998765 589999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEcc--CCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~~--~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
|++|+++|+.++++.+..+.|+||+|+++++. .+..+.|+|.+|+|++||+|.++|.+..++|++|++++.++++|.|
T Consensus 197 g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~ 276 (406)
T TIGR02034 197 GPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARA 276 (406)
T ss_pred hhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCC
Confidence 99999999999888778889999999998752 2334789999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCC
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKT 318 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~ 318 (383)
||+|+++|++ ..++++|++|++++.++..+..|+|++.+ +.+.+++.|+++.+|+|+.+++|+|..+.+.+|++|
T Consensus 277 G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~a~i~~---l~~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t 351 (406)
T TIGR02034 277 GQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFAATLVW---MAEEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNT 351 (406)
T ss_pred CCEEEEEECC--ccccCCccEEEcCCCCCCcceEEEEEEEE---eChhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCC
Confidence 9999999984 56799999999998878889999999999 445679999999999999999999999999999999
Q ss_pred CcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEE--EeCCcEEEEEEE
Q 016750 319 KKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEGKTVAVGKV 373 (383)
Q Consensus 319 ~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~il--r~~~~tvg~G~V 373 (383)
|+. .+|+++++|+.+.|+|++++|+|+++|++++.||||+| |++|+|||+|+|
T Consensus 352 ~~~--~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 352 LEK--GAAKSLELNEIGRVNLSLDEPIAFDPYAENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred Ccc--cCCcccCCCCEEEEEEEECCeeccCcccCCCcceeEEEEECCCCCeEEEEeC
Confidence 874 46889999999999999999999999999999999999 667999999986
No 10
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.6e-68 Score=525.39 Aligned_cols=357 Identities=29% Similarity=0.457 Sum_probs=325.3
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||+||++++||+||+|+++.+..+++++++++|||||||++|.+++..+++.+|++++|||+..|+. .||++
T Consensus 78 ~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-------~qt~~ 150 (474)
T PRK05124 78 LALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-------DQTRR 150 (474)
T ss_pred hhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------ccchH
Confidence 78999999999999999999999999999999999999999999999999999999999999999874 79999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+.++..++++++|+++||||+ .++++++++++++++..+++.+++. ...+++|+||++|+|+.++.+ .++||+
T Consensus 151 ~~~l~~~lg~~~iIvvvNKiD~--~~~~~~~~~~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~~--~~~wy~ 224 (474)
T PRK05124 151 HSFIATLLGIKHLVVAVNKMDL--VDYSEEVFERIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQSE--SMPWYS 224 (474)
T ss_pred HHHHHHHhCCCceEEEEEeecc--ccchhHHHHHHHHHHHHHHHhcCCC--CCceEEEEEeecCCCcccccc--cccccc
Confidence 9999999998778999999999 6666778888888888888877642 156899999999999998764 489999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEcc--CCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~~--~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
|++|++.|+.++++.+..+.|+||+|+++++. ....+.|+|.+|+|++||+|.++|.+..++|++|++++.++++|.|
T Consensus 225 G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~a 304 (474)
T PRK05124 225 GPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFA 304 (474)
T ss_pred hhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCC
Confidence 99999999999887777889999999999752 1223789999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCC
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKT 318 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~ 318 (383)
||+|+++|++ ..++++|++|++++.++..+++|+|++.|+ ...+|..|+++.+|+|+.+++|+|..|.+++|++|
T Consensus 305 G~~V~l~L~~--~~~i~rG~VL~~~~~~~~~~~~f~a~i~~l---~~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t 379 (474)
T PRK05124 305 GEAITLVLED--EIDISRGDLLVAADEALQAVQHASADVVWM---AEQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINT 379 (474)
T ss_pred CCEEEEEeCC--ccccCCccEEECCCCCCccceEEEEEEEEe---CCcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCC
Confidence 9999999984 567999999999987778899999999994 45679999999999999999999999999999999
Q ss_pred CcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEE--eCCcEEEEEEEEEcC
Q 016750 319 KKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLR--TEGKTVAVGKVTELP 377 (383)
Q Consensus 319 ~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr--~~~~tvg~G~V~~~~ 377 (383)
|+. .+|.+|++|+.+.|+|++++|+|+++|+++|.||||+|| +++.|||+|+|+++.
T Consensus 380 ~~~--~~~~~l~~g~~a~v~l~~~~pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 380 LTQ--REAENLPLNGIGLVELTFDEPLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred Ccc--cCccccCCCCEEEEEEEECCeeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 874 458899999999999999999999999999999999995 569999999999877
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=7.2e-65 Score=518.74 Aligned_cols=358 Identities=30% Similarity=0.472 Sum_probs=327.7
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||++|.+++||+||+|+|.++..+++++.+++|+|||||++|.++|..++..+|+++||||+..|+. +|+++
T Consensus 75 ~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-------~~t~e 147 (632)
T PRK05506 75 LALLVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-------TQTRR 147 (632)
T ss_pred eeeeccCCHHHHhCCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-------ccCHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999874 79999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+.++..++++++||++||+|+ +++++++++++.+++..+++.+++. +.+++|+||++|.|+.++.+ .++||.
T Consensus 148 ~~~~~~~~~~~~iivvvNK~D~--~~~~~~~~~~i~~~i~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~ 220 (632)
T PRK05506 148 HSFIASLLGIRHVVLAVNKMDL--VDYDQEVFDEIVADYRAFAAKLGLH---DVTFIPISALKGDNVVTRSA--RMPWYE 220 (632)
T ss_pred HHHHHHHhCCCeEEEEEEeccc--ccchhHHHHHHHHHHHHHHHHcCCC---CccEEEEecccCCCcccccc--CCCccc
Confidence 9999999998778999999999 6667778888989999888888875 56899999999999998765 479999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEcc--CCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~~--~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
|++|++.|+.++++.+..++|+|++|+++++. .+..+.|+|.+|+|++||+|.++|.+..++|+||++++.++++|.|
T Consensus 221 g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~a 300 (632)
T PRK05506 221 GPSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFA 300 (632)
T ss_pred HhHHHHHHhcCCCCCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcC
Confidence 99999999999877777889999999998752 2234789999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCC
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKT 318 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~ 318 (383)
||+|+++|++ ..++++|++|++++.+++.+.+|+|++.| +++.++.+|+++.+|+|+.+++|+|..|.+++|++|
T Consensus 301 G~~v~i~l~~--~~~i~rG~vL~~~~~~~~~~~~f~a~i~~---l~~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t 375 (632)
T PRK05506 301 GQAVTLTLAD--EIDISRGDMLARADNRPEVADQFDATVVW---MAEEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNT 375 (632)
T ss_pred CCeEEEEecC--ccccCCccEEecCCCCCcceeEEEEEEEE---ecccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCC
Confidence 9999999984 56799999999998778889999999999 555557799999999999999999999999999998
Q ss_pred CcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEe--CCcEEEEEEEEEcCCC
Q 016750 319 KKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT--EGKTVAVGKVTELPTV 379 (383)
Q Consensus 319 ~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~--~~~tvg~G~V~~~~~~ 379 (383)
++. ++|++|++|+.+.|+|++++|+|+++|+++|.||||+||| +|.|||+|.|++..+.
T Consensus 376 ~~~--~~p~~l~~g~~~~v~l~~~~pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~ 436 (632)
T PRK05506 376 LER--LAAKTLELNEIGRCNLSTDAPIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALRR 436 (632)
T ss_pred Ccc--CCcceeCCCCEEEEEEEECCEEeeeeccccccCceEEEEeccCCceEEEEEECccccc
Confidence 873 6899999999999999999999999999999999999965 7999999999988763
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.5e-61 Score=473.72 Aligned_cols=348 Identities=28% Similarity=0.472 Sum_probs=306.5
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
.+|++++||+||+|++.....|++++++++|||||||++|+++|+.++..+|++++|||+.+|+. +|+++|+.
T Consensus 118 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-------~qt~e~~~ 190 (478)
T PLN03126 118 EIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHIL 190 (478)
T ss_pred cccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999874 79999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc---cCCCCCCCC
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV---DKSLCPWWN 160 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~---~~~~~~w~~ 160 (383)
++..+|+|++|+++||||+ ++ .++.++.+.+++..+++.++|+. .+++++|+|+++|.|+.... .....+||+
T Consensus 191 ~~~~~gi~~iIvvvNK~Dl--~~-~~~~~~~i~~~i~~~l~~~g~~~-~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~ 266 (478)
T PLN03126 191 LAKQVGVPNMVVFLNKQDQ--VD-DEELLELVELEVRELLSSYEFPG-DDIPIISGSALLALEALMENPNIKRGDNKWVD 266 (478)
T ss_pred HHHHcCCCeEEEEEecccc--cC-HHHHHHHHHHHHHHHHHhcCCCc-CcceEEEEEccccccccccccccccCCCchhh
Confidence 9999999988899999999 54 34567788889999999998863 46899999999998764211 111248997
Q ss_pred -cccHHHHhhcc-CCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC--cEEEEEEEEECCccce
Q 016750 161 -GPCLFEALDRI-EITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVR 234 (383)
Q Consensus 161 -g~~L~~~l~~~-~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~ 234 (383)
+++|++.|+.+ ++|.+..++||+|+|+++| ++.|+|++|+|++|.|++||.|.++|.+ ..++|++|+.++.+++
T Consensus 267 ~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~ 346 (478)
T PLN03126 267 KIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILD 346 (478)
T ss_pred hHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECC
Confidence 57888888874 4566777899999999999 5789999999999999999999999975 5789999999999999
Q ss_pred ecCCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEE
Q 016750 235 HAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELL 311 (383)
Q Consensus 235 ~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~ 311 (383)
+|.|||+|+++|++++..++++|++|++++. +..++.|+|++.|++... +.+|..||++.+|+|+.+++|+|..|.
T Consensus 347 ~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~ 425 (478)
T PLN03126 347 EALAGDNVGLLLRGIQKADIQRGMVLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIM 425 (478)
T ss_pred EEeCCceeeeeccCCcHHHcCCccEEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEe
Confidence 9999999999999999999999999999864 566899999999965321 257999999999999999999999986
Q ss_pred EEeecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 016750 312 HQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 377 (383)
Q Consensus 312 ~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~ 377 (383)
...+ ++|++|++|+.+.|+|++++|+|+++ ++||+||+.|+|+|+|+|+++.
T Consensus 426 ~~~~--------~~~~~l~~gd~a~v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 426 NDKD--------EESKMVMPGDRVKMVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred cccC--------CCccEeCCCCEEEEEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEec
Confidence 5432 35788999999999999999999987 5899999999999999999876
No 13
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=3.4e-61 Score=467.74 Aligned_cols=349 Identities=31% Similarity=0.489 Sum_probs=307.7
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
.+|++++||+||+|++.....|++++.+++|+|||||.+|++++.+++..+|++++|||+..|+. +|+++|+.
T Consensus 49 ~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~~~~~ 121 (409)
T CHL00071 49 EIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTKEHIL 121 (409)
T ss_pred cccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-------HHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999874 79999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccC---CCCCCCC
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK---SLCPWWN 160 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~---~~~~w~~ 160 (383)
++..+++|++|+++||||+ ++ .++.++.+.+++..+++.++++. +.++++|+||++|+|+.+.... ...+||+
T Consensus 122 ~~~~~g~~~iIvvvNK~D~--~~-~~~~~~~~~~~l~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~ 197 (409)
T CHL00071 122 LAKQVGVPNIVVFLNKEDQ--VD-DEELLELVELEVRELLSKYDFPG-DDIPIVSGSALLALEALTENPKIKRGENKWVD 197 (409)
T ss_pred HHHHcCCCEEEEEEEccCC--CC-HHHHHHHHHHHHHHHHHHhCCCC-CcceEEEcchhhcccccccCccccccCCchhh
Confidence 9999999988899999999 54 23567778889999999988863 3579999999999988754321 1248998
Q ss_pred c-ccHHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecC--CcEEEEEEEEECCccce
Q 016750 161 G-PCLFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVR 234 (383)
Q Consensus 161 g-~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~ 234 (383)
+ ++|++.|+. +++|.++.++||+|+|+++| ++.|+|++|+|.+|+|++||.|.+.|. +..++|++|++++++++
T Consensus 198 ~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~ 277 (409)
T CHL00071 198 KIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLD 277 (409)
T ss_pred hHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCC
Confidence 5 999998887 45677778899999999998 578999999999999999999998874 57799999999999999
Q ss_pred ecCCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEE
Q 016750 235 HAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELL 311 (383)
Q Consensus 235 ~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~ 311 (383)
+|.|||+|+++|++++..++++|++|++++ ++..+.+|+|++.+++... ..++.+||++.+|+|+.+++|+|..+.
T Consensus 278 ~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~-~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~ 356 (409)
T CHL00071 278 EGLAGDNVGILLRGIQKEDIERGMVLAKPG-TITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFT 356 (409)
T ss_pred EECCCceeEEEEcCCCHHHcCCeEEEecCC-CCCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEc
Confidence 999999999999999989999999999986 4567899999999965422 257899999999999999999999886
Q ss_pred EEeecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 016750 312 HQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 378 (383)
Q Consensus 312 ~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~ 378 (383)
.. + .++|++|++|+.+.|+|++++|+|++++ |||+||+.|+|+|+|.|+++.+
T Consensus 357 ~~----~----~~~~~~l~~g~~a~v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 357 AD----D----GSKTEMVMPGDRIKMTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred cc----C----CCCCcEecCCCEEEEEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEecC
Confidence 43 1 2468899999999999999999999985 8999999999999999998764
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.2e-61 Score=464.59 Aligned_cols=339 Identities=30% Similarity=0.450 Sum_probs=300.1
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+.+|++++|++||+|++.....+++++.+++|+|||||++|.+++.+++..+|++++|+|+..|+. .|+++|+
T Consensus 48 ~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-------~qt~e~l 120 (396)
T PRK12735 48 DQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHI 120 (396)
T ss_pred hhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hhHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999874 7999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCc-
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG- 161 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g- 161 (383)
..+..+++|++|+++||||+ .+ +++.++.+.+++..+++.+++.. .+++++|+||++|.|... .++||.+
T Consensus 121 ~~~~~~gi~~iivvvNK~Dl--~~-~~~~~~~~~~ei~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~-----~~~w~~~~ 191 (396)
T PRK12735 121 LLARQVGVPYIVVFLNKCDM--VD-DEELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALEGDD-----DEEWEAKI 191 (396)
T ss_pred HHHHHcCCCeEEEEEEecCC--cc-hHHHHHHHHHHHHHHHHHcCCCc-CceeEEecchhccccCCC-----CCcccccH
Confidence 99999999976678999999 43 34566777788999999888742 357999999999999643 3789965
Q ss_pred ccHHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecC--CcEEEEEEEEECCccceec
Q 016750 162 PCLFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHA 236 (383)
Q Consensus 162 ~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a 236 (383)
++|++.|+. +++|.+..++||+|+|+++| ++.|+|++|+|.+|+|++||++.++|. +..++|++|+++++++++|
T Consensus 192 ~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a 271 (396)
T PRK12735 192 LELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEG 271 (396)
T ss_pred HHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEE
Confidence 889998887 56677778899999999999 578999999999999999999999997 4788999999999999999
Q ss_pred CCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEEE
Q 016750 237 GPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQ 313 (383)
Q Consensus 237 ~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~ 313 (383)
.|||+|+++|+|++..++++|++|++++ ++.+++.|+|++.+++... +.+|..||++.+|+|+.+++|+|..
T Consensus 272 ~aGd~v~l~L~~i~~~~i~rG~vl~~~~-~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~---- 346 (396)
T PRK12735 272 QAGDNVGVLLRGTKREDVERGQVLAKPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIEL---- 346 (396)
T ss_pred CCCCEEEEEeCCCcHHHCCcceEEEcCC-CCCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEc----
Confidence 9999999999999999999999999986 4566899999999965321 2578899999999999999999842
Q ss_pred eecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 016750 314 IDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 377 (383)
Q Consensus 314 ~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~ 377 (383)
.++|++|++|+.+.|+|+|++|+|++++ |||+||++|+|+|+|+|+++.
T Consensus 347 ---------~~~~~~l~~g~~a~v~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 347 ---------PEGVEMVMPGDNVKMTVELIAPIAMEEG------LRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred ---------cCCCceeCCCCEEEEEEEECceEEEeEC------CEEEEEcCCcEEEEEEEEEec
Confidence 2357789999999999999999999985 899999999999999999875
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=6e-61 Score=463.77 Aligned_cols=338 Identities=30% Similarity=0.469 Sum_probs=299.9
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
++|++++|++||+|++.....+++++.+++|+|||||.+|++++..++..+|++++|||+..|+. +|+++|+.
T Consensus 49 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-------~qt~~~~~ 121 (396)
T PRK00049 49 QIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHIL 121 (396)
T ss_pred hccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999874 79999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCc-c
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-P 162 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g-~ 162 (383)
++..+++|.+|+++||+|+ .+ +++.++.+.+++..+++.+++. ..+++++|+||++|.+-. ..++||++ +
T Consensus 122 ~~~~~g~p~iiVvvNK~D~--~~-~~~~~~~~~~~i~~~l~~~~~~-~~~~~iv~iSa~~g~~~~-----~~~~w~~~~~ 192 (396)
T PRK00049 122 LARQVGVPYIVVFLNKCDM--VD-DEELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEGD-----DDEEWEKKIL 192 (396)
T ss_pred HHHHcCCCEEEEEEeecCC--cc-hHHHHHHHHHHHHHHHHhcCCC-ccCCcEEEeecccccCCC-----CcccccccHH
Confidence 9999999966678999999 43 3456677778899999998884 236799999999997732 24789976 8
Q ss_pred cHHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecC--CcEEEEEEEEECCccceecC
Q 016750 163 CLFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAG 237 (383)
Q Consensus 163 ~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~ 237 (383)
+|++.|+. +++|.+..++||+|+|+++| ++.|+|++|+|.+|+|++||++.+.|. +..++|+||+++++++++|.
T Consensus 193 ~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~ 272 (396)
T PRK00049 193 ELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQ 272 (396)
T ss_pred HHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEc
Confidence 99999987 66677778899999999999 579999999999999999999999986 68899999999999999999
Q ss_pred CCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEEEe
Q 016750 238 PGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQI 314 (383)
Q Consensus 238 aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~ 314 (383)
|||+|+++|+|++..++++|++|++++ ++.++++|+|++.+++... +.++..||++.+|+++.+++|+|. +
T Consensus 273 ~Gd~v~l~l~~i~~~~i~~G~vl~~~~-~~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l---- 346 (396)
T PRK00049 273 AGDNVGALLRGIKREDVERGQVLAKPG-SITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L---- 346 (396)
T ss_pred CCCEEEEEeCCCCHHHCCcceEEecCC-CCCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e----
Confidence 999999999999999999999999986 4556899999999965311 357899999999999999999983 2
Q ss_pred ecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 016750 315 DLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 377 (383)
Q Consensus 315 d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~ 377 (383)
.++|++|++|+.+.|+|++++|+|++++ |||+||+.|+|+|+|+|+++.
T Consensus 347 --------~~~~~~l~~g~~a~v~i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 347 --------PEGVEMVMPGDNVEMTVELIAPIAMEEG------LRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred --------cCCCcccCCCCEEEEEEEECceEEEeeC------CEEEEecCCcEEEEEEEEEec
Confidence 2357889999999999999999999985 799999999999999999875
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.6e-60 Score=460.80 Aligned_cols=337 Identities=30% Similarity=0.475 Sum_probs=297.0
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+++|++++|++||+|++.....|++++++++|||||||++|+++++++++.+|++++|||+..|+. +|+++|+
T Consensus 48 ~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-------~~t~~~~ 120 (394)
T PRK12736 48 DSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHI 120 (394)
T ss_pred hhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHH
Confidence 379999999999999999999999999999999999999999999999999999999999999874 7999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCc-
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG- 161 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g- 161 (383)
.++..+++|++|+++||||+ .+ +++.++.+.+++..+++..++.. ..++++|+||++|.+- ..+||.+
T Consensus 121 ~~~~~~g~~~~IvviNK~D~--~~-~~~~~~~i~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~~-------~~~~~~~i 189 (394)
T PRK12736 121 LLARQVGVPYLVVFLNKVDL--VD-DEELLELVEMEVRELLSEYDFPG-DDIPVIRGSALKALEG-------DPKWEDAI 189 (394)
T ss_pred HHHHHcCCCEEEEEEEecCC--cc-hHHHHHHHHHHHHHHHHHhCCCc-CCccEEEeeccccccC-------CCcchhhH
Confidence 99999999988899999999 43 23556667788999999888753 2579999999998542 2478864
Q ss_pred ccHHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecC--CcEEEEEEEEECCccceec
Q 016750 162 PCLFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHA 236 (383)
Q Consensus 162 ~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a 236 (383)
++|++.|.. +++|.+..++||+|+|+++| ++.|+|++|+|++|+|++||.|+++|. +..++|+||+++++++++|
T Consensus 190 ~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a 269 (394)
T PRK12736 190 MELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEG 269 (394)
T ss_pred HHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEE
Confidence 788888876 56677778899999999999 579999999999999999999999997 6789999999999999999
Q ss_pred CCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEEE
Q 016750 237 GPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQ 313 (383)
Q Consensus 237 ~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~ 313 (383)
.|||+++++|+|++..++++|++|++++ ++.++++|+|++.+++... ..++..||++.+|+|+.++.|+|..
T Consensus 270 ~aGd~v~l~l~~i~~~~i~~G~vl~~~~-~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~---- 344 (394)
T PRK12736 270 QAGDNVGVLLRGVDRDEVERGQVLAKPG-SIKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL---- 344 (394)
T ss_pred CCCCEEEEEECCCcHHhCCcceEEecCC-CCCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe----
Confidence 9999999999999989999999999986 4456799999999965311 2578899999999999999999742
Q ss_pred eecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 016750 314 IDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 377 (383)
Q Consensus 314 ~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~ 377 (383)
.++|++|++|+.+.|+|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 345 ---------~~~~~~l~~g~~a~v~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 345 ---------PEGTEMVMPGDNVTITVELIHPIAMEQG------LKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred ---------cCCcceeCCCCEEEEEEEECceEEEeeC------CEEEEecCCcEEEEEEEEEee
Confidence 2357789999999999999999999986 799999999999999999875
No 17
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=4e-60 Score=461.73 Aligned_cols=336 Identities=28% Similarity=0.442 Sum_probs=293.9
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
.+|++++||+||+|++.....|++++++++|+|||||++|+++|++++..+|+++||||+.+|+. +|+++|+.
T Consensus 98 ~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-------~qt~e~l~ 170 (447)
T PLN03127 98 EIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHIL 170 (447)
T ss_pred cccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999874 79999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccc---ccccccccCCCCCCCC
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTRVDKSLCPWWN 160 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g---~~i~~~~~~~~~~w~~ 160 (383)
++..+++|++|+++||||+ ++ +++.++.+.+++.++++.++++ ..+++++|+|++++ .|.. ..|..
T Consensus 171 ~~~~~gip~iIvviNKiDl--v~-~~~~~~~i~~~i~~~l~~~~~~-~~~vpiip~Sa~sa~~g~n~~-------~~~~~ 239 (447)
T PLN03127 171 LARQVGVPSLVVFLNKVDV--VD-DEELLELVEMELRELLSFYKFP-GDEIPIIRGSALSALQGTNDE-------IGKNA 239 (447)
T ss_pred HHHHcCCCeEEEEEEeecc--CC-HHHHHHHHHHHHHHHHHHhCCC-CCcceEEEeccceeecCCCcc-------cccch
Confidence 9999999977889999999 54 2345666667888888887775 23579999998754 3321 34566
Q ss_pred cccHHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecC----CcEEEEEEEEECCccc
Q 016750 161 GPCLFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN----KAQVKVLAIYCDDNRV 233 (383)
Q Consensus 161 g~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~----~~~~~V~sI~~~~~~v 233 (383)
+++|++.|+. +++|.+..++||+|+|+++| ++.|+|++|+|.+|.|++||+|.+.|. +..++|+||+++++++
T Consensus 240 i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v 319 (447)
T PLN03127 240 ILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKIL 319 (447)
T ss_pred HHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEe
Confidence 7788888876 56677778899999999999 579999999999999999999999975 4689999999999999
Q ss_pred eecCCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEE
Q 016750 234 RHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVEL 310 (383)
Q Consensus 234 ~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i 310 (383)
++|.|||+|+++|+|++..++++|++|++++ ++..+++|+|++.+++... +.++..||++.+|+++.+++|+|..
T Consensus 320 ~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~-~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~- 397 (447)
T PLN03127 320 DQGQAGDNVGLLLRGLKREDVQRGQVICKPG-SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL- 397 (447)
T ss_pred CEEcCCCEEEEEeCCCCHHHCCCccEEecCC-CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-
Confidence 9999999999999999999999999999985 5678999999999965321 2578999999999999999999852
Q ss_pred EEEeecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 016750 311 LHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 377 (383)
Q Consensus 311 ~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~ 377 (383)
.++|++|++|+.+.|+|+|++|+|++.+ |||+||+.|+|+|+|+|+++.
T Consensus 398 ------------~~~~~~l~~gd~a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 398 ------------PEGVKMVMPGDNVTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred ------------ccCccccCCCCEEEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEec
Confidence 2357889999999999999999999975 899999999999999999874
No 18
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=8.9e-60 Score=456.37 Aligned_cols=338 Identities=30% Similarity=0.471 Sum_probs=296.3
Q ss_pred ceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
.|.+|++++|++||+|++.....+++++++++|||||||++|.+++++++..+|++++|||+..|+. +|+++|
T Consensus 47 ~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~e~ 119 (394)
T TIGR00485 47 YDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPM-------PQTREH 119 (394)
T ss_pred cccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHH
Confidence 3679999999999999999999998889999999999999999999999999999999999999874 799999
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC-
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN- 160 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~- 160 (383)
+..+..+++|++|+++||||+ .+ +++.++.+.+++..+++..++.. .+++++++||++|.+- ..+||.
T Consensus 120 l~~~~~~gi~~iIvvvNK~Dl--~~-~~~~~~~~~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~g-------~~~~~~~ 188 (394)
T TIGR00485 120 ILLARQVGVPYIVVFLNKCDM--VD-DEELLELVEMEVRELLSEYDFPG-DDTPIIRGSALKALEG-------DAEWEAK 188 (394)
T ss_pred HHHHHHcCCCEEEEEEEeccc--CC-HHHHHHHHHHHHHHHHHhcCCCc-cCccEEECcccccccc-------CCchhHh
Confidence 999999999977789999999 54 23456667778999999888752 2479999999998642 246986
Q ss_pred cccHHHHhhcc-CCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecC--CcEEEEEEEEECCcccee
Q 016750 161 GPCLFEALDRI-EITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRH 235 (383)
Q Consensus 161 g~~L~~~l~~~-~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~ 235 (383)
+++|++.|+.+ ++|.+..++||+|+|+++| ++.|+|++|+|.+|+|++||+|.+.|. +..++|++|++++.++++
T Consensus 189 ~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~ 268 (394)
T TIGR00485 189 ILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDE 268 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEE
Confidence 48888888774 5667778899999999999 578999999999999999999999984 578999999999999999
Q ss_pred cCCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEE
Q 016750 236 AGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLH 312 (383)
Q Consensus 236 a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~ 312 (383)
|.|||+|+++|+|++..++++|++|++++ ++.+++.|+|++.+++.-. +.++..|+++.+|+++.++.|+|..
T Consensus 269 a~aGd~v~l~l~~i~~~~i~rG~vl~~~~-~~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~--- 344 (394)
T TIGR00485 269 GRAGDNVGLLLRGIKREEIERGMVLAKPG-SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITL--- 344 (394)
T ss_pred ECCCCEEEEEeCCccHHHCCccEEEecCC-CCCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEe---
Confidence 99999999999999888999999999985 4566799999999954311 2578999999999999999999863
Q ss_pred EeecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 016750 313 QIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 377 (383)
Q Consensus 313 ~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~ 377 (383)
.++|.+|++|+.+.|+|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 345 ----------~~~~~~l~~g~~a~v~~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 345 ----------PEGVEMVMPGDNVKMTVELISPIALEQG------MRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred ----------cCCcceeCCCCEEEEEEEECceEEEeEC------CEEEEecCCcEEEEEEEEEec
Confidence 2357889999999999999999999985 899999999999999999875
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-56 Score=390.70 Aligned_cols=336 Identities=30% Similarity=0.491 Sum_probs=294.5
Q ss_pred cCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
-|..||||+|||||+.+...|++.++.|..+|+|||.||+++|+.++.+.|+|||||+|.+|++ +||++|+.+
T Consensus 50 id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLl 122 (394)
T COG0050 50 IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILL 122 (394)
T ss_pred hccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------Ccchhhhhh
Confidence 4789999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCc-cc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PC 163 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g-~~ 163 (383)
++..|+|++++++||+|+ ++ +++..+.+..+++++|..++|. ..+.|++.-||+....-. .+|... ..
T Consensus 123 arqvGvp~ivvflnK~Dm--vd-d~ellelVemEvreLLs~y~f~-gd~~Pii~gSal~ale~~-------~~~~~~i~e 191 (394)
T COG0050 123 ARQVGVPYIVVFLNKVDM--VD-DEELLELVEMEVRELLSEYGFP-GDDTPIIRGSALKALEGD-------AKWEAKIEE 191 (394)
T ss_pred hhhcCCcEEEEEEecccc--cC-cHHHHHHHHHHHHHHHHHcCCC-CCCcceeechhhhhhcCC-------cchHHHHHH
Confidence 999999999999999999 65 5678888889999999999997 557788888876532211 124321 23
Q ss_pred HHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC--cEEEEEEEEECCccceecCC
Q 016750 164 LFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 164 L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~a 238 (383)
|+++++. +|.|.++.++||+|+|.++| .++|+|++|||++|+|++|+.+.+...+ ++..|++++++++..+++.|
T Consensus 192 Lm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~A 271 (394)
T COG0050 192 LMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQA 271 (394)
T ss_pred HHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhcccc
Confidence 6677766 68899999999999999998 5899999999999999999999998755 56789999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEEEee
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQID 315 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d 315 (383)
||+|++.|+|+++.++.||++|+.++ ...+.++|+|+++++++-. |.++..||++.+++.+...+..+..
T Consensus 272 Gdnvg~llRg~~r~~veRGqvLakpg-si~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l------ 344 (394)
T COG0050 272 GDNVGVLLRGVKREDVERGQVLAKPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITL------ 344 (394)
T ss_pred CCCcceEEEeccccceecceEeecCC-cccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEec------
Confidence 99999999999999999999999986 5688999999999965422 3788899999999999988875432
Q ss_pred cCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 016750 316 LKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 378 (383)
Q Consensus 316 ~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~ 378 (383)
.+....+.+||.+.+.++|.+|+.+|.. .||.+|..|+|+|.|.|.++.+
T Consensus 345 -------~eg~emvmpgdnv~~~veLi~pia~e~G------~rFaIreGgrtvgaGvV~~i~~ 394 (394)
T COG0050 345 -------PEGVEMVMPGDNVKMVVELIHPIAMEEG------LRFAIREGGRTVGAGVVTKIIE 394 (394)
T ss_pred -------cCCcceecCCCceEEEEEEeeeeecCCC------CEEEEEeCCeeeeeeEEeeecC
Confidence 2234669999999999999999999987 5999999999999999998853
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-57 Score=402.73 Aligned_cols=337 Identities=31% Similarity=0.472 Sum_probs=295.9
Q ss_pred cCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
.|+-||||.|||||......|++..+.|.-+|+|||.||+++|+.|..+.|+|||||.|++|.+ +||+||+.+
T Consensus 92 ID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLL 164 (449)
T KOG0460|consen 92 IDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLL 164 (449)
T ss_pred hhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHH
Confidence 3889999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC--cc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN--GP 162 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~--g~ 162 (383)
++..|+++++|++||.|+ ++ +++.++-+.-+++++|..+||+ +.+.|+|.-||+...-=.++ .... -.
T Consensus 165 ArQVGV~~ivvfiNKvD~--V~-d~e~leLVEmE~RElLse~gf~-Gd~~PvI~GSAL~ALeg~~p------eig~~aI~ 234 (449)
T KOG0460|consen 165 ARQVGVKHIVVFINKVDL--VD-DPEMLELVEMEIRELLSEFGFD-GDNTPVIRGSALCALEGRQP------EIGLEAIE 234 (449)
T ss_pred HHHcCCceEEEEEecccc--cC-CHHHHHHHHHHHHHHHHHcCCC-CCCCCeeecchhhhhcCCCc------cccHHHHH
Confidence 999999999999999999 64 4566777788899999999998 66889998887643211110 0110 11
Q ss_pred cHHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC--cEEEEEEEEECCccceecC
Q 016750 163 CLFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAG 237 (383)
Q Consensus 163 ~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~ 237 (383)
.|++.+++ +|.|.++.+.||.|+|.++| .|+|+|++||++.|+|++|+++.+...+ .+..|..|+++++.+++|.
T Consensus 235 kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~ 314 (449)
T KOG0460|consen 235 KLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQ 314 (449)
T ss_pred HHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcc
Confidence 26777777 88999999999999999998 5899999999999999999999998766 5668999999999999999
Q ss_pred CCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEEEe
Q 016750 238 PGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQI 314 (383)
Q Consensus 238 aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~ 314 (383)
|||.+++.|+|++.++++||++++.++. ..+.++|+|++++++.-. ++++..+|++.+++.++.+.|++....
T Consensus 315 AGDn~G~LlRGik~~dvkRGmvl~~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~--- 390 (449)
T KOG0460|consen 315 AGDNLGALLRGIKREDVKRGMVLAKPGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPP--- 390 (449)
T ss_pred cccceehhhhcCCHHHHhcccEEecCCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccC---
Confidence 9999999999999999999999999984 788999999999965422 378899999999999999999976421
Q ss_pred ecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 016750 315 DLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 378 (383)
Q Consensus 315 d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~ 378 (383)
..+.+.||+.+.+++.|.+|+++++. .||.||+.|+|||.|+|+++++
T Consensus 391 ----------~~~mvMPGe~~~~~~~Li~pm~le~G------qrFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 391 ----------EKEMVMPGENVKVEVTLIRPMPLEKG------QRFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred ----------hHhcccCCCCeEEEEEEecccccCCC------ceeeEccCCeeeeeeeEeeeee
Confidence 13469999999999999999999987 6999999999999999999876
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.2e-52 Score=408.26 Aligned_cols=316 Identities=22% Similarity=0.387 Sum_probs=268.8
Q ss_pred cCCCHHHHhhcceeeccceeeee---------------c------------------CcEEEEEeCCCCCChHHHHHHhh
Q 016750 5 MDTNEEERIKGKTVEVGRAHFET---------------E------------------TTRFTILDAPGHKSYVPNMISGA 51 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~---------------~------------------~~~i~liDtPG~~~~~~~~~~~~ 51 (383)
+|++++|++||+|++++|.++.+ . .++++|+|||||++|+++|++++
T Consensus 59 ~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~ 138 (460)
T PTZ00327 59 TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGA 138 (460)
T ss_pred cccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHH
Confidence 68999999999999999986621 1 24799999999999999999999
Q ss_pred hhcCEEEEEEECCCC-ccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC
Q 016750 52 SQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 130 (383)
Q Consensus 52 ~~ad~~ilvvda~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
..+|+++|||||.++ +. +||++|+..+..++++++|+++||+|+ .+ .++.++..+++.++++.....
T Consensus 139 ~~~D~alLVVda~~g~~~-------~qT~ehl~i~~~lgi~~iIVvlNKiDl--v~--~~~~~~~~~ei~~~l~~~~~~- 206 (460)
T PTZ00327 139 AVMDAALLLIAANESCPQ-------PQTSEHLAAVEIMKLKHIIILQNKIDL--VK--EAQAQDQYEEIRNFVKGTIAD- 206 (460)
T ss_pred hhCCEEEEEEECCCCccc-------hhhHHHHHHHHHcCCCcEEEEEecccc--cC--HHHHHHHHHHHHHHHHhhccC-
Confidence 999999999999986 42 799999999999999889999999999 43 345566667777776654322
Q ss_pred CCCceEEEccccccccccccccCCCCCCCCcccHHHHhh-ccCCCCCCCCCCeeEEEEEEE--cc--------CCeEEEE
Q 016750 131 KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALD-RIEITPRDPNGPFRMPIIDKF--KD--------MGTVVMG 199 (383)
Q Consensus 131 ~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~-~~~~~~~~~~~p~~~~I~~~~--~~--------~G~vv~G 199 (383)
.++++|+||++|+|++. |++.|. .++++.+..+.|++++|+++| ++ .|+|++|
T Consensus 207 --~~~iipVSA~~G~nI~~--------------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G 270 (460)
T PTZ00327 207 --NAPIIPISAQLKYNIDV--------------VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGG 270 (460)
T ss_pred --CCeEEEeeCCCCCCHHH--------------HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEE
Confidence 57999999999999987 677777 677777778899999999887 22 6999999
Q ss_pred EEEEeEEecCCEEEEecCC-------------cEEEEEEEEECCccceecCCCCeEEEEEe---cCCccCceeeEEEecC
Q 016750 200 KVESGSVREGDSLLVMPNK-------------AQVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSV 263 (383)
Q Consensus 200 ~V~sG~l~~gd~v~i~p~~-------------~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---g~~~~~i~~G~vl~~~ 263 (383)
+|.+|+|++||+|.+.|++ ..++|+||++++.++++|.|||+++++|+ +++..++.+|++|+.+
T Consensus 271 ~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~ 350 (460)
T PTZ00327 271 SILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYP 350 (460)
T ss_pred EEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcC
Confidence 9999999999999999975 46799999999999999999999999988 7888899999999998
Q ss_pred CCCcccccEEEEEEEEeccc-----------c-cccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccC
Q 016750 264 AKPVAAVTEFIAQLQILELL-----------D-NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKN 331 (383)
Q Consensus 264 ~~~~~~~~~f~a~i~~~~~~-----------~-~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~ 331 (383)
+.+++.++.|+|++.|++.. . ..+++.|+++.+|+++.++.|+|..+. .
T Consensus 351 ~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~----~--------------- 411 (460)
T PTZ00327 351 GKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIK----D--------------- 411 (460)
T ss_pred CCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEEEEEeC----C---------------
Confidence 87777778999999996542 1 157999999999999999999998752 1
Q ss_pred CCEEEEEEEECceEEeeeccCccccceEEEEeC----CcEEEEEEEEE
Q 016750 332 GAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE----GKTVAVGKVTE 375 (383)
Q Consensus 332 g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~----~~tvg~G~V~~ 375 (383)
+. .++|+|++|+|+... .||+||+. .+|+|+|.|.+
T Consensus 412 -~~-~~~l~l~~P~~~~~g------dr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 412 -DG-IAKLELTTPVCTSVG------EKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred -Ce-EEEEEECccEeccCC------CEEEEEeccCCCcEEEEEEEEcC
Confidence 11 678999999999876 59999964 48999999874
No 22
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=6.3e-52 Score=417.81 Aligned_cols=315 Identities=24% Similarity=0.384 Sum_probs=275.0
Q ss_pred cCCCHHHHhhcceeeccceeeee-cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 5 MDTNEEERIKGKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+|++++|++||+|++.++..+.. ++..++|||||||++|.++|..++..+|++++|||+++|++ +|+++|+.
T Consensus 25 ~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-------~qT~ehl~ 97 (614)
T PRK10512 25 ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-------AQTREHLA 97 (614)
T ss_pred CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-------HHHHHHHH
Confidence 68999999999999999988876 46789999999999999999999999999999999999875 79999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 163 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~ 163 (383)
++..++++++|||+||+|+ ++ +++++.+.+++..+++..++. ..+++|+||++|+|+++
T Consensus 98 il~~lgi~~iIVVlNKiDl--v~--~~~~~~v~~ei~~~l~~~~~~---~~~ii~VSA~tG~gI~~-------------- 156 (614)
T PRK10512 98 ILQLTGNPMLTVALTKADR--VD--EARIAEVRRQVKAVLREYGFA---EAKLFVTAATEGRGIDA-------------- 156 (614)
T ss_pred HHHHcCCCeEEEEEECCcc--CC--HHHHHHHHHHHHHHHHhcCCC---CCcEEEEeCCCCCCCHH--------------
Confidence 9999999977899999999 43 466777888888888877764 46899999999999988
Q ss_pred HHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCe
Q 016750 164 LFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGEN 241 (383)
Q Consensus 164 L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~ 241 (383)
|.+.|..++.+....++|+||+|+++| +|.|+|++|+|.+|+|++||++.+.|.+..++|++|++|+.++++|.||++
T Consensus 157 L~~~L~~~~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~r 236 (614)
T PRK10512 157 LREHLLQLPEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQR 236 (614)
T ss_pred HHHHHHHhhccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCe
Confidence 667777766666667899999999999 689999999999999999999999999999999999999999999999999
Q ss_pred EEEEEec-CCccCceeeEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCc
Q 016750 242 LRIRLSG-IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKK 320 (383)
Q Consensus 242 v~l~l~g-~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~ 320 (383)
|+++|+| ++..++++|++|+.++ ++..+..+.+.+.. ..+++.|+.+.+|+|+.++.|+|..+
T Consensus 237 val~l~g~~~~~~i~rGdvl~~~~-~~~~~~~~~~~l~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l---------- 300 (614)
T PRK10512 237 IALNIAGDAEKEQINRGDWLLADA-PPEPFTRVIVELQT-----HTPLTQWQPLHIHHAASHVTGRVSLL---------- 300 (614)
T ss_pred EEEEecCCCChhhCCCcCEEeCCC-CCccceeEEEEEcC-----CccCCCCCEEEEEEcccEEEEEEEEc----------
Confidence 9999997 8989999999999874 45555555443221 25688999999999999999999865
Q ss_pred ccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeC--CcEEEEEEEEEcCCCCC
Q 016750 321 PMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE--GKTVAVGKVTELPTVSS 381 (383)
Q Consensus 321 ~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~--~~tvg~G~V~~~~~~~~ 381 (383)
+.+.+++.+++|+++... .||+||+. .+|+|+|.|+++.++..
T Consensus 301 ------------~~~~~~l~l~~p~~~~~g------dr~ilr~~s~~~tigGg~Vld~~~~~~ 345 (614)
T PRK10512 301 ------------EDNLAELVLDTPLWLADN------DRLVLRDISARNTLAGARVVMLNPPRR 345 (614)
T ss_pred ------------CCeEEEEEECCcccccCC------CEEEEEeCCCCEEEEEEEEcccCCccc
Confidence 235799999999998876 69999994 69999999999887644
No 23
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-49 Score=365.83 Aligned_cols=316 Identities=27% Similarity=0.411 Sum_probs=264.5
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
..+|..|||++||+|+|++++++..+++.+.|||+|||++|+++|+.++...|+|+||||+++|++ +||.||+
T Consensus 23 ~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~-------~qtgEhL 95 (447)
T COG3276 23 GVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM-------AQTGEHL 95 (447)
T ss_pred cccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc-------hhhHHHH
Confidence 457999999999999999999999999999999999999999999999999999999999999985 8999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGP 162 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~ 162 (383)
..++.+|+++.|+|+||+|+ ++ +++.++..+++. ..+.+. +.+++++|+.+|+|+++
T Consensus 96 ~iLdllgi~~giivltk~D~--~d--~~r~e~~i~~Il---~~l~l~---~~~i~~~s~~~g~GI~~------------- 152 (447)
T COG3276 96 LILDLLGIKNGIIVLTKADR--VD--EARIEQKIKQIL---ADLSLA---NAKIFKTSAKTGRGIEE------------- 152 (447)
T ss_pred HHHHhcCCCceEEEEecccc--cc--HHHHHHHHHHHH---hhcccc---cccccccccccCCCHHH-------------
Confidence 99999999999999999999 54 345444444444 443344 67899999999999999
Q ss_pred cHHHHhhccC-CCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCC
Q 016750 163 CLFEALDRIE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPG 239 (383)
Q Consensus 163 ~L~~~l~~~~-~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG 239 (383)
|.+.|..+. .+.++.+.|||++|++.| +|.|+|++|++.||++++||++++.|.++.++|||||.++.++++|.||
T Consensus 153 -Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG 231 (447)
T COG3276 153 -LKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAG 231 (447)
T ss_pred -HHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhcccc
Confidence 455554444 466788999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCC
Q 016750 240 ENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTK 319 (383)
Q Consensus 240 ~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~ 319 (383)
++|+++|+|++.+++.||++|++++ +..+++.+.+.+.+... ...++..++.+.+|.|..+.+|++..+..
T Consensus 232 ~RVgLaL~~v~~eei~RG~~L~~~~-~~~v~~~~~~~~~i~~~-~~~~l~~~~~~hi~~g~~~~~~~i~~l~~------- 302 (447)
T COG3276 232 QRVGLALKGVEKEEIERGDWLLKPE-PLEVTTRLIVELEIDPL-FKKTLKQGQPVHIHVGLRSVTGRIVPLEK------- 302 (447)
T ss_pred ceeeeecCCCCHHHhhcccEeccCC-CCCcceEEEEEEEeccc-cccccCCCceEEEEEeccccceEeeeccc-------
Confidence 9999999999999999999999986 44778888888887332 23678899999999999999999875431
Q ss_pred cccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeC--CcEEEEEEEEEcCCCC
Q 016750 320 KPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE--GKTVAVGKVTELPTVS 380 (383)
Q Consensus 320 ~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~--~~tvg~G~V~~~~~~~ 380 (383)
+ +++.+.+|+..... ++++||+. ..+.+++.|+....+.
T Consensus 303 ------------~----~~l~~~k~i~~~~~------~~l~lr~~~a~~~~~g~rvl~~~~~~ 343 (447)
T COG3276 303 ------------N----AELNLVKPIALGDN------DRLVLRDNSAVIKLAGARVLSLNLPL 343 (447)
T ss_pred ------------c----ceeeeecccccccC------ceEEEEcccceeeeccceEEecCCCC
Confidence 1 34455555554332 46677666 3666666777665543
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=3e-48 Score=376.38 Aligned_cols=315 Identities=25% Similarity=0.418 Sum_probs=260.0
Q ss_pred cCCCHHHHhhcceeeccceeeeec--------------------------CcEEEEEeCCCCCChHHHHHHhhhhcCEEE
Q 016750 5 MDTNEEERIKGKTVEVGRAHFETE--------------------------TTRFTILDAPGHKSYVPNMISGASQADIGV 58 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~~--------------------------~~~i~liDtPG~~~~~~~~~~~~~~ad~~i 58 (383)
+|+.++|++||+|++.++..+.+. .++++|||||||++|..+++.++..+|+++
T Consensus 34 ~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~l 113 (411)
T PRK04000 34 TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAI 113 (411)
T ss_pred cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEE
Confidence 799999999999999987654431 268999999999999999999999999999
Q ss_pred EEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEE
Q 016750 59 LVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLP 138 (383)
Q Consensus 59 lvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 138 (383)
+|+|++.+.. ..++.+++..+..++++++++++||+|+ .+. ++.....+++..+++.... ...++++
T Consensus 114 lVVDa~~~~~------~~~t~~~l~~l~~~~i~~iiVVlNK~Dl--~~~--~~~~~~~~~i~~~l~~~~~---~~~~ii~ 180 (411)
T PRK04000 114 LVIAANEPCP------QPQTKEHLMALDIIGIKNIVIVQNKIDL--VSK--ERALENYEQIKEFVKGTVA---ENAPIIP 180 (411)
T ss_pred EEEECCCCCC------ChhHHHHHHHHHHcCCCcEEEEEEeecc--ccc--hhHHHHHHHHHHHhccccC---CCCeEEE
Confidence 9999998752 1688999999988888768899999999 431 2223334455555543221 1468999
Q ss_pred ccccccccccccccCCCCCCCCcccHHHHhhc-cCCCCCCCCCCeeEEEEEEEc--c--------CCeEEEEEEEEeEEe
Q 016750 139 ISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFRMPIIDKFK--D--------MGTVVMGKVESGSVR 207 (383)
Q Consensus 139 iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~~--~--------~G~vv~G~V~sG~l~ 207 (383)
+||++|+|+++ |++.|.. ++++.+..++|++|+|+++|. + .|+|++|+|.+|+|+
T Consensus 181 vSA~~g~gI~~--------------L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~ 246 (411)
T PRK04000 181 VSALHKVNIDA--------------LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLK 246 (411)
T ss_pred EECCCCcCHHH--------------HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEe
Confidence 99999999987 5555555 566667778999999999982 2 577999999999999
Q ss_pred cCCEEEEecCCc------------EEEEEEEEECCccceecCCCCeEEEEEe---cCCccCceeeEEEecCCCCcccccE
Q 016750 208 EGDSLLVMPNKA------------QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTE 272 (383)
Q Consensus 208 ~gd~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---g~~~~~i~~G~vl~~~~~~~~~~~~ 272 (383)
+||.|.++|++. .++|+||++++.++++|.|||+|+++|+ +++..++++|++|++++.+++.+..
T Consensus 247 ~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~ 326 (411)
T PRK04000 247 VGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWES 326 (411)
T ss_pred cCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEE
Confidence 999999999863 5799999999999999999999999996 6778899999999999877888899
Q ss_pred EEEEEEEeccc-------ccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceE
Q 016750 273 FIAQLQILELL-------DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 345 (383)
Q Consensus 273 f~a~i~~~~~~-------~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi 345 (383)
|+|++.+++.. ...++..|+++.+|+++.+++|+|..+. ++ .++++|.+|+
T Consensus 327 f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~--------------------~~--~~~~~l~~p~ 384 (411)
T PRK04000 327 LTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSAR--------------------KD--EAEVKLKRPV 384 (411)
T ss_pred EEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcC--------------------Cc--EEEEEECCcE
Confidence 99999996531 1357999999999999999999998752 12 5778899999
Q ss_pred EeeeccCccccceEEE--EeCC--cEEEEEEEE
Q 016750 346 CTEKFADFAQLGRFTL--RTEG--KTVAVGKVT 374 (383)
Q Consensus 346 ~~~~~~~~~~lgr~il--r~~~--~tvg~G~V~ 374 (383)
|+.+. .||+| |+++ |++|+|.|.
T Consensus 385 ~~~~g------~r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 385 CAEEG------DRVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred ecCCC------CEEEEEEecCCcEEEEEEEEeC
Confidence 99876 69999 5567 999999873
No 25
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=5.6e-48 Score=374.83 Aligned_cols=314 Identities=25% Similarity=0.409 Sum_probs=259.3
Q ss_pred cCCCHHHHhhcceeeccceeeee--------------------------cCcEEEEEeCCCCCChHHHHHHhhhhcCEEE
Q 016750 5 MDTNEEERIKGKTVEVGRAHFET--------------------------ETTRFTILDAPGHKSYVPNMISGASQADIGV 58 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~--------------------------~~~~i~liDtPG~~~~~~~~~~~~~~ad~~i 58 (383)
+|+.++|++||+|+++++..+.+ .+..++|||||||++|.+++..+++.+|+++
T Consensus 29 ~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aI 108 (406)
T TIGR03680 29 TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAL 108 (406)
T ss_pred cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEE
Confidence 68999999999999999766531 1468999999999999999999999999999
Q ss_pred EEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEE
Q 016750 59 LVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLP 138 (383)
Q Consensus 59 lvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 138 (383)
+|||++++.. ..|+++|+..+..++++++++++||+|+ .+ .+...+..+++..+++.... ..++++|
T Consensus 109 lVVDa~~g~~------~~qt~e~l~~l~~~gi~~iIVvvNK~Dl--~~--~~~~~~~~~~i~~~l~~~~~---~~~~ii~ 175 (406)
T TIGR03680 109 LVIAANEPCP------QPQTKEHLMALEIIGIKNIVIVQNKIDL--VS--KEKALENYEEIKEFVKGTVA---ENAPIIP 175 (406)
T ss_pred EEEECCCCcc------ccchHHHHHHHHHcCCCeEEEEEEcccc--CC--HHHHHHHHHHHHhhhhhccc---CCCeEEE
Confidence 9999998751 2699999999999998879999999999 43 22223334455555544321 2468999
Q ss_pred ccccccccccccccCCCCCCCCcccHHHHhhc-cCCCCCCCCCCeeEEEEEEE--cc--------CCeEEEEEEEEeEEe
Q 016750 139 ISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVR 207 (383)
Q Consensus 139 iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~--------~G~vv~G~V~sG~l~ 207 (383)
+||++|+|+++ |++.|.. ++++.++.+.|++|+|+++| ++ +|+|++|+|.+|+|+
T Consensus 176 vSA~~g~gi~~--------------L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~ 241 (406)
T TIGR03680 176 VSALHNANIDA--------------LLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLK 241 (406)
T ss_pred EECCCCCChHH--------------HHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEe
Confidence 99999999987 5666665 56666777899999999998 22 578999999999999
Q ss_pred cCCEEEEecCC------------cEEEEEEEEECCccceecCCCCeEEEEEe---cCCccCceeeEEEecCCCCcccccE
Q 016750 208 EGDSLLVMPNK------------AQVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTE 272 (383)
Q Consensus 208 ~gd~v~i~p~~------------~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---g~~~~~i~~G~vl~~~~~~~~~~~~ 272 (383)
+||+|.++|++ ..++|+||++++.++++|.|||+|+++|+ +++..++++|++|++++.+++.+..
T Consensus 242 ~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~ 321 (406)
T TIGR03680 242 VGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWES 321 (406)
T ss_pred CCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeE
Confidence 99999999985 24799999999999999999999999984 7888999999999999877777899
Q ss_pred EEEEEEEeccc-------ccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceE
Q 016750 273 FIAQLQILELL-------DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 345 (383)
Q Consensus 273 f~a~i~~~~~~-------~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi 345 (383)
|+|++.|++.. ...+++.|+++.+|+++.+++|+|..+. ++ .++++|.+|+
T Consensus 322 f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~--------------------~~--~~~l~l~~p~ 379 (406)
T TIGR03680 322 LELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSAR--------------------KD--EIEVKLKRPV 379 (406)
T ss_pred EEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcC--------------------Cc--EEEEEECCcE
Confidence 99999996432 1367999999999999999999998642 12 3778899999
Q ss_pred EeeeccCccccceEEE--EeCC--cEEEEEEE
Q 016750 346 CTEKFADFAQLGRFTL--RTEG--KTVAVGKV 373 (383)
Q Consensus 346 ~~~~~~~~~~lgr~il--r~~~--~tvg~G~V 373 (383)
|+... .||+| |.++ +++|+|.|
T Consensus 380 ~~~~g------~r~~~~~~~~~~~~~~g~g~~ 405 (406)
T TIGR03680 380 CAEEG------DRVAISRRVGGRWRLIGYGII 405 (406)
T ss_pred EcCCC------CEEEEEEecCCceEEEEEEEe
Confidence 99876 69999 3334 89999987
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.2e-47 Score=386.01 Aligned_cols=311 Identities=26% Similarity=0.391 Sum_probs=264.8
Q ss_pred cCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 5 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
+|.+++|++||+|++.++..+++++..++|||||||++|.++|..++..+|++++|||+++|++ +|+.+|+..
T Consensus 25 ~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-------~qT~ehl~i 97 (581)
T TIGR00475 25 ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-------TQTGEHLAV 97 (581)
T ss_pred CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------HHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999875 799999999
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccH
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 164 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L 164 (383)
+..+++|++|+++||+|+ ++ +++++...+++..+++..++. .+.+++|+||++|+|++++.+. |
T Consensus 98 l~~lgi~~iIVVlNK~Dl--v~--~~~~~~~~~ei~~~l~~~~~~--~~~~ii~vSA~tG~GI~eL~~~----------L 161 (581)
T TIGR00475 98 LDLLGIPHTIVVITKADR--VN--EEEIKRTEMFMKQILNSYIFL--KNAKIFKTSAKTGQGIGELKKE----------L 161 (581)
T ss_pred HHHcCCCeEEEEEECCCC--CC--HHHHHHHHHHHHHHHHHhCCC--CCCcEEEEeCCCCCCchhHHHH----------H
Confidence 999999989999999999 43 455666777888888776653 1468999999999999986541 4
Q ss_pred HHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeE
Q 016750 165 FEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENL 242 (383)
Q Consensus 165 ~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v 242 (383)
.+.++.++.+ ..++|++|+|+++| +|.|+|++|+|.+|+|++||++.++|.+..++|++|+++++++++|.||++|
T Consensus 162 ~~l~~~~~~~--~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rv 239 (581)
T TIGR00475 162 KNLLESLDIK--RIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRI 239 (581)
T ss_pred HHHHHhCCCc--CcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEE
Confidence 4445554432 25789999999998 6899999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCccc
Q 016750 243 RIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPM 322 (383)
Q Consensus 243 ~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~ 322 (383)
+++|+|++..++++|.+++.+.. ....+...+.. ..++..|+.+.+|+|+..+.|++..+. .
T Consensus 240 al~L~~i~~~~i~rG~~~~~~~~---~~~~~~~~~~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l~----~------ 301 (581)
T TIGR00475 240 ALNLMDVEPESLKRGLLILTPED---PKLRVVVKFIA-----EVPLLELQPYHIAHGMSVTTGKISLLD----K------ 301 (581)
T ss_pred EEEeCCCCHHHcCCceEEcCCCC---CCceEEEEEEc-----CCccCCCCeEEEEEeceEEEEEEEEcc----C------
Confidence 99999999999999988776542 22334444333 245788999999999999999987542 1
Q ss_pred ccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeC-CcEEEEEEEEEc
Q 016750 323 KKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE-GKTVAVGKVTEL 376 (383)
Q Consensus 323 ~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~-~~tvg~G~V~~~ 376 (383)
..+++.+++|+++... .||++|++ .+|+|+|.|+++
T Consensus 302 ------------~~~~l~l~~P~~~~~g------d~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 302 ------------GIALLTLDAPLILAKG------DKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred ------------cEEEEEECCceecCCC------CEEEEEeCCCEEEeeeEEecC
Confidence 1678889999998876 49999995 599999999988
No 27
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=4e-46 Score=338.01 Aligned_cols=322 Identities=29% Similarity=0.440 Sum_probs=281.9
Q ss_pred ecCCCHHHHhhcceeeccceeeee-----------------------cCcEEEEEeCCCCCChHHHHHHhhh--hcCEEE
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFET-----------------------ETTRFTILDAPGHKSYVPNMISGAS--QADIGV 58 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~-----------------------~~~~i~liDtPG~~~~~~~~~~~~~--~ad~~i 58 (383)
++|..+.|-+||.|-++++.-|-+ .++.+.|+||-||+.|++++++++- ..|+.+
T Consensus 152 ~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYgl 231 (527)
T COG5258 152 YLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGL 231 (527)
T ss_pred hhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEE
Confidence 468899999999999999887633 2467899999999999999999985 799999
Q ss_pred EEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC--------
Q 016750 59 LVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-------- 130 (383)
Q Consensus 59 lvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 130 (383)
|+|.|++|++ ..|+||+.++..+++| +||++||+|+ . +.+++..+.+++...|+..+-.|
T Consensus 232 LvVaAddG~~-------~~tkEHLgi~~a~~lP-viVvvTK~D~--~--~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d 299 (527)
T COG5258 232 LVVAADDGVT-------KMTKEHLGIALAMELP-VIVVVTKIDM--V--PDDRFQGVVEEISALLKRVGRIPLIVKDTDD 299 (527)
T ss_pred EEEEccCCcc-------hhhhHhhhhhhhhcCC-EEEEEEeccc--C--cHHHHHHHHHHHHHHHHHhcccceeeeccch
Confidence 9999999995 7999999999999999 8999999999 5 36889999999999998764221
Q ss_pred ----------C-CCceEEEccccccccccccccCCCCCCCCcccHHHHhhccCCC-CCCCCCCeeEEEEEEE--ccCCeE
Q 016750 131 ----------K-KDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT-PRDPNGPFRMPIIDKF--KDMGTV 196 (383)
Q Consensus 131 ----------~-~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~~~~~-~~~~~~p~~~~I~~~~--~~~G~v 196 (383)
. .-+|++.+|+.+|+|++- |.+++..+|+. ..+..+||.|+|+++| .|.|+|
T Consensus 300 ~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl--------------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtV 365 (527)
T COG5258 300 VVLAAKAMKAGRGVVPIFYTSSVTGEGLDL--------------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTV 365 (527)
T ss_pred hHHhhhhhhcCCceEEEEEEecccCccHHH--------------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEE
Confidence 1 135789999999999986 66777777765 3356789999999998 689999
Q ss_pred EEEEEEEeEEecCCEEEEecCC----cEEEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEEEecCCCCcccccE
Q 016750 197 VMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTE 272 (383)
Q Consensus 197 v~G~V~sG~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~ 272 (383)
+.|.|.+|.|..||+++++|-. ..++|+||++|+..+++|.||++++++++|+..+++++||+|+.+ .+|++.++
T Consensus 366 vsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVre 444 (527)
T COG5258 366 VSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVRE 444 (527)
T ss_pred EeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhhe
Confidence 9999999999999999999965 688999999999999999999999999999999999999999987 67899999
Q ss_pred EEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEEC-ceEEeeec
Q 016750 273 FIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKF 350 (383)
Q Consensus 273 f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~-~pi~~~~~ 350 (383)
|+|++.+ +.| +.|..||.+++|+.+.++++++..+ |+ .+|++||+..++++|. +|-.++..
T Consensus 445 f~AeV~v---l~HPT~I~aGye~v~H~etI~e~~~f~~i----d~----------~~L~~GD~g~vr~~fkyrP~~v~eG 507 (527)
T COG5258 445 FDAEVLV---LRHPTTIRAGYEPVFHYETIREAVYFEEI----DK----------GFLMPGDRGVVRMRFKYRPHHVEEG 507 (527)
T ss_pred ecceEEE---EeCCcEEecCceeeeEeeEeeheeEEEEc----cc----------ccccCCCcceEEEEEEeCchhhccC
Confidence 9999999 677 7899999999999999999998764 32 3599999999999987 99988873
Q ss_pred cCccccceEEEEeCCcEEEEEEEEEc
Q 016750 351 ADFAQLGRFTLRTEGKTVAVGKVTEL 376 (383)
Q Consensus 351 ~~~~~lgr~ilr~~~~tvg~G~V~~~ 376 (383)
.+|++ ++|++.|.|.|+.+
T Consensus 508 ------Q~fvF-ReGrskgvG~v~~~ 526 (527)
T COG5258 508 ------QKFVF-REGRSKGVGRVIRV 526 (527)
T ss_pred ------cEEEE-ecCCCccceEEecc
Confidence 35555 57999999999976
No 28
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=2.5e-40 Score=299.53 Aligned_cols=304 Identities=26% Similarity=0.382 Sum_probs=259.3
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~ 106 (383)
.+.++|||.+||++|+++++.++. .+|..+|+|-|+.|+. +.|+||+.++..+.+| +++|++|+|.+.++
T Consensus 218 aKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-------GmTKEHLgLALaL~VP-VfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 218 AKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-------GMTKEHLGLALALHVP-VFVVVTKIDMCPAN 289 (641)
T ss_pred ceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-------eccHHhhhhhhhhcCc-EEEEEEeeccCcHH
Confidence 457899999999999999999987 6999999999999985 7999999999999999 88999999997653
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCC--------------------CCCCceEEEccccccccccccccCCCCCCCCcccHHH
Q 016750 107 WSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE 166 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~ 166 (383)
.+++..+.+..+++..|.. ...-+|++.+|..+|+|+.- |..
T Consensus 290 ----iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L--------------Lkm 351 (641)
T KOG0463|consen 290 ----ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL--------------LKM 351 (641)
T ss_pred ----HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH--------------HHH
Confidence 4556666677777765543 12345678888888888764 445
Q ss_pred HhhccCCCC-CCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC----cEEEEEEEEECCccceecCCC
Q 016750 167 ALDRIEITP-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPG 239 (383)
Q Consensus 167 ~l~~~~~~~-~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG 239 (383)
+|+.+++.. ...+.|..|.|+++| ++.|+|+.|+..+|+|+.+|.+.++|.. .+..||||+..+-+|..+.+|
T Consensus 352 FLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcG 431 (641)
T KOG0463|consen 352 FLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCG 431 (641)
T ss_pred HHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEecc
Confidence 666654322 345678999999998 7999999999999999999999999975 578999999999999999999
Q ss_pred CeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCC
Q 016750 240 ENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKT 318 (383)
Q Consensus 240 ~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~ 318 (383)
+.+.++|+.++..++++|+|+++++..|.++++|+|+|.+ ++| +.|.+.|+..+|||+.+++|.|.++.
T Consensus 432 QtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV---LHHPTTIsprYQAMvHcGSiRQTAtivsM~------- 501 (641)
T KOG0463|consen 432 QTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV---LHHPTTISPRYQAMVHCGSIRQTATIVSMG------- 501 (641)
T ss_pred chhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE---EecCCccCcchhheeeeccccceeeeeecC-------
Confidence 9999999999999999999999999899999999999999 777 78999999999999999999988752
Q ss_pred CcccccccccccCCCEEEEEEEE-CceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCCCC
Q 016750 319 KKPMKKKVLFVKNGAIVVCRIQV-NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSSS 382 (383)
Q Consensus 319 ~~~~~~~~~~l~~g~~~~v~~~~-~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~~~~ 382 (383)
-.||+.||.+.|+|+| .+|-++.+ |.-.++++|||.|+|.|+++++..+.
T Consensus 502 -------kdcLRTGDka~V~FrFIkqPEYir~-------gqrlVFREGRTKAVGti~~~lp~~~~ 552 (641)
T KOG0463|consen 502 -------KDCLRTGDKAKVQFRFIKQPEYIRP-------GQRLVFREGRTKAVGTISSVLPQESL 552 (641)
T ss_pred -------hhhhhcCCcceEEEEEecCcceecC-------CceEEeecccceeeeeeccccccccc
Confidence 3579999999999997 57777765 44455568999999999999987654
No 29
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-38 Score=278.65 Aligned_cols=317 Identities=25% Similarity=0.383 Sum_probs=264.4
Q ss_pred ecCCCHHHHhhcceeeccceeeee--------------------c------CcEEEEEeCCCCCChHHHHHHhhhhcCEE
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFET--------------------E------TTRFTILDAPGHKSYVPNMISGASQADIG 57 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~--------------------~------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ 57 (383)
-+|+..||-+||+||.++|..... . -+.+.|+|+|||+-++.+|++|+...|+|
T Consensus 34 wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgA 113 (415)
T COG5257 34 WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGA 113 (415)
T ss_pred eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcce
Confidence 368999999999999999875321 0 24689999999999999999999999999
Q ss_pred EEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEE
Q 016750 58 VLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFL 137 (383)
Q Consensus 58 ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 137 (383)
+|||+|+++.. ++||+||+-.+.-.|++++|++.||+|+ +. +++..+--+++++|++..-- ++.|++
T Consensus 114 lLvIaANEpcP------QPQT~EHl~AleIigik~iiIvQNKIDl--V~--~E~AlE~y~qIk~FvkGt~A---e~aPII 180 (415)
T COG5257 114 LLVIAANEPCP------QPQTREHLMALEIIGIKNIIIVQNKIDL--VS--RERALENYEQIKEFVKGTVA---ENAPII 180 (415)
T ss_pred EEEEecCCCCC------CCchHHHHHHHhhhccceEEEEecccce--ec--HHHHHHHHHHHHHHhccccc---CCCcee
Confidence 99999998764 6999999999999999999999999999 53 55555666777777775542 377999
Q ss_pred EccccccccccccccCCCCCCCCcccHHHHhhc-cCCCCCCCCCCeeEEEEEEEc----------cCCeEEEEEEEEeEE
Q 016750 138 PISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSV 206 (383)
Q Consensus 138 ~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~~----------~~G~vv~G~V~sG~l 206 (383)
|+||..+.|++. |.++|.. +|.|.++.+.|.+|+|.++|. -.|-|+.|.+.+|.|
T Consensus 181 PiSA~~~~NIDa--------------l~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l 246 (415)
T COG5257 181 PISAQHKANIDA--------------LIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVL 246 (415)
T ss_pred eehhhhccCHHH--------------HHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeE
Confidence 999999999997 6666654 889999999999999999992 279999999999999
Q ss_pred ecCCEEEEecCC------------cEEEEEEEEECCccceecCCCCeEEEEEe---cCCccCceeeEEEecCCCCccccc
Q 016750 207 REGDSLLVMPNK------------AQVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVT 271 (383)
Q Consensus 207 ~~gd~v~i~p~~------------~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---g~~~~~i~~G~vl~~~~~~~~~~~ 271 (383)
+.||++.+.|+- ...+|.||+-.+..+++|.||..+++... .+.+.|-..|+|+..++..|+...
T Consensus 247 ~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~ 326 (415)
T COG5257 247 RVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWT 326 (415)
T ss_pred ecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceE
Confidence 999999999964 24578999999999999999999998554 456678889999999998888899
Q ss_pred EEEEEEEEecccc------c-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECce
Q 016750 272 EFIAQLQILELLD------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 344 (383)
Q Consensus 272 ~f~a~i~~~~~~~------~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p 344 (383)
+|+.+..+++..- + .+|+.|....+.+|+..+-+.|.+.. .| .+++.|.+|
T Consensus 327 ~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k--------------------~d--~~ev~Lk~P 384 (415)
T COG5257 327 SIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAK--------------------KD--EIEVKLKRP 384 (415)
T ss_pred EEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEec--------------------Cc--eEEEEeccc
Confidence 9999998854211 2 57999999999999999988887643 12 367788899
Q ss_pred EEeeeccCccccceEEEEeC----CcEEEEEEEEE
Q 016750 345 ICTEKFADFAQLGRFTLRTE----GKTVAVGKVTE 375 (383)
Q Consensus 345 i~~~~~~~~~~lgr~ilr~~----~~tvg~G~V~~ 375 (383)
+|.+.. .|..+-+. .|.+|+|.|..
T Consensus 385 vcae~g------~rvaisRri~~rWRLIG~G~ik~ 413 (415)
T COG5257 385 VCAEIG------ERVAISRRIGNRWRLIGYGTIKE 413 (415)
T ss_pred eecCCC------CEEEEEeeecceEEEEeEEEEec
Confidence 999885 46666443 59999999875
No 30
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-37 Score=278.86 Aligned_cols=325 Identities=23% Similarity=0.363 Sum_probs=273.4
Q ss_pred CCHHHHhhcceeeccceee---------------------eecCcEEEEEeCCCCCChHHHHHHhhh--hcCEEEEEEEC
Q 016750 7 TNEEERIKGKTVEVGRAHF---------------------ETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISA 63 (383)
Q Consensus 7 ~~~~E~~rG~Ti~~~~~~~---------------------~~~~~~i~liDtPG~~~~~~~~~~~~~--~ad~~ilvvda 63 (383)
+.+.|.+.|.|..+++..+ +-+.+.++|||.+||.+|.++++.++. -+|+|+|||+|
T Consensus 205 Rh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA 284 (591)
T KOG1143|consen 205 RHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSA 284 (591)
T ss_pred cchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEc
Confidence 5678888888877765433 123567899999999999999999997 68999999999
Q ss_pred CCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC-------------
Q 016750 64 RKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV------------- 130 (383)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 130 (383)
+.|+. ..|+||+.++.++++| ++++++|||+ .+ +.-++...+++..++++.|+..
T Consensus 285 ~~Gi~-------~tTrEHLgl~~AL~iP-fFvlvtK~Dl--~~--~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~ 352 (591)
T KOG1143|consen 285 DRGIT-------WTTREHLGLIAALNIP-FFVLVTKMDL--VD--RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVK 352 (591)
T ss_pred CCCCc-------cccHHHHHHHHHhCCC-eEEEEEeecc--cc--chhHHHHHHHHHHHHhhcCccccceEeechHHHHH
Confidence 99984 7899999999999999 8899999999 43 4556778888888888877541
Q ss_pred -------CCCceEEEccccccccccccccCCCCCCCCcccHHHHhhccCCCCCC------CCCCeeEEEEEEE--ccCCe
Q 016750 131 -------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD------PNGPFRMPIIDKF--KDMGT 195 (383)
Q Consensus 131 -------~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~~~~~~~~------~~~p~~~~I~~~~--~~~G~ 195 (383)
...+|++.+|..+|+|+.- |..+|+.++|-... ...|..|.|+++| ++.|.
T Consensus 353 Aaq~~~s~nivPif~vSsVsGegl~l--------------l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~ 418 (591)
T KOG1143|consen 353 AAQELCSGNIVPIFAVSSVSGEGLRL--------------LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQ 418 (591)
T ss_pred HHHHhccCCceeEEEEeecCccchhH--------------HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccc
Confidence 1235788899999999875 44566666543221 2567899999998 68999
Q ss_pred EEEEEEEEeEEecCCEEEEecCC----cEEEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEEEecCCCCccccc
Q 016750 196 VVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVT 271 (383)
Q Consensus 196 vv~G~V~sG~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~ 271 (383)
|+.|.+.+|.++.|+.+.++|.. .+.+|.||+..+.++..+.||+.+.+.+..-+..-+++|++|..++..|+.+.
T Consensus 419 VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~ 498 (591)
T KOG1143|consen 419 VVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCY 498 (591)
T ss_pred cccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEE
Confidence 99999999999999999999976 67899999999999999999999999998777777999999999998899999
Q ss_pred EEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEE-CceEEeee
Q 016750 272 EFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV-NNSICTEK 349 (383)
Q Consensus 272 ~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~-~~pi~~~~ 349 (383)
.|+|.+.+ +-| +.|..|++..+|+|+.+++|.|..|.. ..+|++|++|.|+|.| .+|-++.+
T Consensus 499 ~F~A~~~l---LfHaT~i~~GFQ~TVhiGsvrqTAvi~~I~~-------------~d~lrtg~~AvV~f~F~~hPEyir~ 562 (591)
T KOG1143|consen 499 EFTANLLL---LFHATYICEGFQATVHIGSVRQTAVITHIDD-------------ADCLRTGKWAVVKFCFAYHPEYIRE 562 (591)
T ss_pred EEeeeehh---hhhhHhheecceEEEEEcceeeeeeeeeecc-------------cccccCCceEEEEEEecCCchhccC
Confidence 99999999 666 889999999999999999999887642 3469999999999997 57776655
Q ss_pred ccCccccceEEEEeCCcEEEEEEEEEcCCCC
Q 016750 350 FADFAQLGRFTLRTEGKTVAVGKVTELPTVS 380 (383)
Q Consensus 350 ~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~~ 380 (383)
|.-||+++|.|.|.|.|+++-|-.
T Consensus 563 -------G~~ilfReG~tKGiG~Vt~Vfp~t 586 (591)
T KOG1143|consen 563 -------GSPILFREGKTKGIGEVTKVFPCT 586 (591)
T ss_pred -------CCeeeeecccccccceEEEEEecc
Confidence 677788899999999999987643
No 31
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-38 Score=292.73 Aligned_cols=321 Identities=34% Similarity=0.609 Sum_probs=282.7
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||++|++..|++||+||+.....+.+..+.++++|.|||.+|.++|+.+.++||.++++|.+..|.||++++..+|+++
T Consensus 53 ~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~e 132 (391)
T KOG0052|consen 53 YAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 132 (391)
T ss_pred eeeeechhhhccccceEEEEEeecccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|..++..+|+.++|+.+||||.....+++.++.++.+..+...+..++++ .
T Consensus 133 halla~tlgv~qliv~v~k~D~~~~~~s~~r~~ei~k~~~~~~~~~g~n~-----------------~------------ 183 (391)
T KOG0052|consen 133 HALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGYNP-----------------A------------ 183 (391)
T ss_pred hhhhhccccceeeeEEeecccccCCCccccchhhhheeeeeeeeccccCC-----------------h------------
Confidence 99999999999999999999986555666777666554444333333220 0
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
+. ..+.++ +.| +..|.++.+..+...|.....++++..++++.-.++.+
T Consensus 184 -----~~------------------~~~~~~~~g~~------~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p 234 (391)
T KOG0052|consen 184 -----AV------------------LQDVYKIGGIG------VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLP 234 (391)
T ss_pred -----hh------------------hccceeeccee------eeeeeccCccceeccccccccccccEEEEeccCccCCC
Confidence 00 111121 122 78889999999999998888999999999988889999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCC-CCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeec
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVA-KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDL 316 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~-~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~ 316 (383)
|+.++++..++...++++|+++.+.. .|+.....|.+++.+ +.| ..+..||.+.+.|++...+|++..|..++|.
T Consensus 235 ~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~~~~g~t~qvii---lnhpgqis~gy~pvldcht~hiacKfael~~Kid~ 311 (391)
T KOG0052|consen 235 GDNVGFNVKNVSVKDIDRGNVVGDSKNDPPVEAAGFTAQVII---LNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDR 311 (391)
T ss_pred cceeeeecccCccCcccccceecccccCCccccccceeeEEE---ecCccccCCCccccccccccceeeehhhchhhhhc
Confidence 99999999999999999999998887 567778889999999 666 7899999999999999999999999999999
Q ss_pred CCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCCCC
Q 016750 317 KTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSSS 382 (383)
Q Consensus 317 ~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~~~~ 382 (383)
.+|...+..|+++++++.+.+...+.+|+|+|.|++++.+|||.+||...|+|.|.|..+.+..++
T Consensus 312 ~sg~~~e~~pk~~~~~daai~~~vp~kp~~ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~~~ 377 (391)
T KOG0052|consen 312 RSGKKLEDEPKFLKSGDAAIVEMVPGKPLCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKDAG 377 (391)
T ss_pred CCceeecCCCccccCCcceeeeeccCCccccccccccccccchhhhhhhccccccceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999877654
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.6e-35 Score=295.97 Aligned_cols=243 Identities=23% Similarity=0.342 Sum_probs=201.1
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
|+||++++||+||+|+......++|++++++|||||||.+|..++.++++.+|+++||||+..|++ .|+++++
T Consensus 37 ~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~-------~qT~~~l 109 (594)
T TIGR01394 37 RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPM-------PQTRFVL 109 (594)
T ss_pred ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------HHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999874 7999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC-CCCceEEEccccccccccccccCCCCCCCCc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 161 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g 161 (383)
..+...++| +|+++||+|++. .++.++.+++..++..++... ...++++++||++|.+..++.. ..+.-.
T Consensus 110 ~~a~~~~ip-~IVviNKiD~~~-----a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~---~~~gi~ 180 (594)
T TIGR01394 110 KKALELGLK-PIVVINKIDRPS-----ARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD---PSDNMA 180 (594)
T ss_pred HHHHHCCCC-EEEEEECCCCCC-----cCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc---cccCHH
Confidence 999999999 789999999943 335566677777776665431 1246899999999987554321 111111
Q ss_pred ccHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC---cEEEEEEEEEC----Ccc
Q 016750 162 PCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNR 232 (383)
Q Consensus 162 ~~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~---~~~~V~sI~~~----~~~ 232 (383)
+.|..+++.+|+|..+.++||++.|++++ +..|++++|||++|+|++||.|.+.|.+ ...+|++|+.+ +.+
T Consensus 181 ~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~ 260 (594)
T TIGR01394 181 PLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVE 260 (594)
T ss_pred HHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceE
Confidence 22344566788887778899999999997 4689999999999999999999999974 25789999876 689
Q ss_pred ceecCCCCeEEEEEecCCccCceeeEEEecCCC
Q 016750 233 VRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 265 (383)
Q Consensus 233 v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~ 265 (383)
+++|.|||+|++ .|+ .++.+|++|++++.
T Consensus 261 v~~a~aGDiv~i--~gl--~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 261 IDEAGAGDIVAV--AGL--EDINIGETIADPEV 289 (594)
T ss_pred CCEECCCCEEEE--eCC--cccCCCCEEeCCCc
Confidence 999999999985 566 45899999998874
No 33
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-35 Score=260.64 Aligned_cols=318 Identities=22% Similarity=0.344 Sum_probs=249.0
Q ss_pred cCCCHHHHhhcceeeccceeeee---------cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccC
Q 016750 5 MDTNEEERIKGKTVEVGRAHFET---------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKG 75 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~---------~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~ 75 (383)
.|..|..++||+|.|+++..+.. +.-+++|+|+|||..++++.+.|....|.+++|||+..|. +
T Consensus 36 FDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~-------Q 108 (522)
T KOG0461|consen 36 FDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK-------Q 108 (522)
T ss_pred hccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc-------c
Confidence 48899999999999999998864 2356899999999999999999999999999999999997 4
Q ss_pred CchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccc----ccccccc
Q 016750 76 GQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG----LNMKTRV 151 (383)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g----~~i~~~~ 151 (383)
.|+.|++.+...+..+ ++||+||+|.-..+..+...++....++.-|+..+|. .+.|++++||..| +++.+
T Consensus 109 tQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~--g~~PI~~vsa~~G~~~~~~i~e-- 183 (522)
T KOG0461|consen 109 TQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD--GNSPIVEVSAADGYFKEEMIQE-- 183 (522)
T ss_pred cccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC--CCCceeEEecCCCccchhHHHH--
Confidence 8999999888887765 8899999998433333456677778888889998886 4689999999999 55555
Q ss_pred cCCCCCCCCcccHHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEE
Q 016750 152 DKSLCPWWNGPCLFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC 228 (383)
Q Consensus 152 ~~~~~~w~~g~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~ 228 (383)
|.+.|.+ +..|.++..+||.|.|+++| +|.|+|.+|+|.+|.|+.|+.+.+..-+..-+|||+++
T Consensus 184 ------------L~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqm 251 (522)
T KOG0461|consen 184 ------------LKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQM 251 (522)
T ss_pred ------------HHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHH
Confidence 6666655 66788999999999999998 79999999999999999999999998888889999999
Q ss_pred CCccceecCCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc--ccccCCcEEEEEEeeeEEEEE
Q 016750 229 DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN--AIFTAGYKAVLHIHAVVEECE 306 (383)
Q Consensus 229 ~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~--~~i~~g~~~~~~~~~~~~~~~ 306 (383)
++.++.+|.+||++++.+...+..-+.||-+ +.++ ...+.. |-+..++++.- .+|..-....+.+|...+.|+
T Consensus 252 f~~~vtsa~~GdR~g~cVtqFd~klleRgi~-~~pg-~Lk~~~---avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~ 326 (522)
T KOG0461|consen 252 FKQRVTSAAAGDRAGFCVTQFDEKLLERGIC-GPPG-TLKSTK---AVLATVEPIQYFRKSINSKSKIHIAVGHETVMAE 326 (522)
T ss_pred HhhhhhhhhcccceeeeeeccCHHHHhcccc-CCCc-ccceee---eeeEeecchHHHhhhhhhcceEEEEehhhhhhhh
Confidence 9999999999999999999888877888843 3332 333333 33333333332 556555666666666666666
Q ss_pred EEEEEE--------EeecCC--CcccccccccccCCCEEEEEEEECceEEeeeccC
Q 016750 307 IVELLH--------QIDLKT--KKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFAD 352 (383)
Q Consensus 307 i~~i~~--------~~d~~~--~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~ 352 (383)
...+.. ++|++- ++ ..--|..+.+++...+-+.+++|+.+.+|++
T Consensus 327 ~~ff~d~d~~~~tf~~~kEye~~E-~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~ 381 (522)
T KOG0461|consen 327 CQFFKDTDGTTSTFQLDKEYENGE-FDMLPALLAPCDVIQALFSFEKPVFLPEYSN 381 (522)
T ss_pred eEEeeccCCcccccccchhhhccc-cccChhhcCCchheeeeeeecccccCccccc
Confidence 555431 111110 11 0123667888888899999999999888753
No 34
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=6.4e-33 Score=278.25 Aligned_cols=240 Identities=21% Similarity=0.307 Sum_probs=198.5
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
++||++++|++||+|++.....+++++..++|||||||.+|...+..+++.+|++|+|||+..|+. .|++.++
T Consensus 41 ~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~-------~qt~~~l 113 (607)
T PRK10218 41 RVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-------PQTRFVT 113 (607)
T ss_pred eeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCcc-------HHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999874 7999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC-CCCceEEEccccccccccccccC--CCCCCC
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDK--SLCPWW 159 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iSa~~g~~i~~~~~~--~~~~w~ 159 (383)
..+...++| .|+++||+|++.+ +++++.+++..++..++... ..+++++++||++|.|..++... ...+|
T Consensus 114 ~~a~~~gip-~IVviNKiD~~~a-----~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~L- 186 (607)
T PRK10218 114 KKAFAYGLK-PIVVINKVDRPGA-----RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPL- 186 (607)
T ss_pred HHHHHcCCC-EEEEEECcCCCCC-----chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHH-
Confidence 999999999 6789999999543 45566677777765554331 12478999999999975543210 01122
Q ss_pred CcccHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecC-Cc--EEEEEEEEEC----C
Q 016750 160 NGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN-KA--QVKVLAIYCD----D 230 (383)
Q Consensus 160 ~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~-~~--~~~V~sI~~~----~ 230 (383)
|..+++.+|+|..+.++||++.|++++ ++.|++++|||++|+|+.||.|.+.+. +. ..+|.+|... +
T Consensus 187 ----ld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~ 262 (607)
T PRK10218 187 ----YQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLER 262 (607)
T ss_pred ----HHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCc
Confidence 334567788888788899999999996 468999999999999999999999886 43 5788888655 6
Q ss_pred ccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 231 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 231 ~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
.++++|.|||+|+ +.|++ ++..|++|++++
T Consensus 263 ~~v~~a~AGdIva--i~gl~--~~~~GdTl~~~~ 292 (607)
T PRK10218 263 IETDLAEAGDIVA--ITGLG--ELNISDTVCDTQ 292 (607)
T ss_pred eECCEEcCCCEEE--EECcc--ccccCcEEecCC
Confidence 8899999999999 66664 488999998876
No 35
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2e-32 Score=275.92 Aligned_cols=231 Identities=21% Similarity=0.372 Sum_probs=189.8
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec-----CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCC
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGG 76 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~-----~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~ 76 (383)
.+++|+.++|++||+|++.....+.|. .+.++|||||||.+|...+.++++.+|++|+|+|++++.. .
T Consensus 37 ~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~-------~ 109 (595)
T TIGR01393 37 EQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIE-------A 109 (595)
T ss_pred ccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCC-------H
Confidence 367899999999999999988887763 2688999999999999999999999999999999999874 6
Q ss_pred chHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCC
Q 016750 77 QTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLC 156 (383)
Q Consensus 77 ~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~ 156 (383)
|+.+++..+...++| +|+++||+|++..+ .++..+++.+. +++. ..+++++||++|.|+.++
T Consensus 110 qt~~~~~~~~~~~ip-iIiViNKiDl~~~~-----~~~~~~el~~~---lg~~---~~~vi~vSAktG~GI~~L------ 171 (595)
T TIGR01393 110 QTLANVYLALENDLE-IIPVINKIDLPSAD-----PERVKKEIEEV---IGLD---ASEAILASAKTGIGIEEI------ 171 (595)
T ss_pred hHHHHHHHHHHcCCC-EEEEEECcCCCccC-----HHHHHHHHHHH---hCCC---cceEEEeeccCCCCHHHH------
Confidence 888888887788998 88999999994321 22333444333 3332 235899999999999984
Q ss_pred CCCCcccHHH-HhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECC---
Q 016750 157 PWWNGPCLFE-ALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD--- 230 (383)
Q Consensus 157 ~w~~g~~L~~-~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~--- 230 (383)
++ +.+.+|+|..+.++|+++.|++++ ++.|++++|||.+|+|+.||+|.+.|.+...+|++|..++
T Consensus 172 --------le~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~ 243 (595)
T TIGR01393 172 --------LEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL 243 (595)
T ss_pred --------HHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc
Confidence 44 345678787788999999999998 4689999999999999999999999999999999998775
Q ss_pred ccceecCCCCeEEEEEecCC-ccCceeeEEEecCCCC
Q 016750 231 NRVRHAGPGENLRIRLSGIE-EEDILSGFVLSSVAKP 266 (383)
Q Consensus 231 ~~v~~a~aG~~v~l~l~g~~-~~~i~~G~vl~~~~~~ 266 (383)
.++++|.||| ++..+.|++ ..++++||+|+..+.+
T Consensus 244 ~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~~~ 279 (595)
T TIGR01393 244 TKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVKNP 279 (595)
T ss_pred eECCEEcCCC-EEEEeccccccCccCCCCEEECCCCc
Confidence 7789999999 555566664 3679999999987643
No 36
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=2e-32 Score=276.16 Aligned_cols=230 Identities=23% Similarity=0.366 Sum_probs=190.4
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec-----CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCC
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGG 76 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~-----~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~ 76 (383)
.+++|++++||+||+|++.....+.|. ++.++|||||||.+|...+.++++.+|++|+|||++.++. .
T Consensus 41 ~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-------~ 113 (600)
T PRK05433 41 AQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-------A 113 (600)
T ss_pred cccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-------H
Confidence 368999999999999999988888764 6789999999999999999999999999999999999873 6
Q ss_pred chHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCC
Q 016750 77 QTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLC 156 (383)
Q Consensus 77 ~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~ 156 (383)
|+.+++..+...++| +|+++||+|++..+ ++...+++... +++. ...++++||++|.|+.+
T Consensus 114 qt~~~~~~~~~~~lp-iIvViNKiDl~~a~-----~~~v~~ei~~~---lg~~---~~~vi~iSAktG~GI~~------- 174 (600)
T PRK05433 114 QTLANVYLALENDLE-IIPVLNKIDLPAAD-----PERVKQEIEDV---IGID---ASDAVLVSAKTGIGIEE------- 174 (600)
T ss_pred HHHHHHHHHHHCCCC-EEEEEECCCCCccc-----HHHHHHHHHHH---hCCC---cceEEEEecCCCCCHHH-------
Confidence 888898888888998 88999999994322 23333444433 3332 23589999999999998
Q ss_pred CCCCcccHHHH-hhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC---C
Q 016750 157 PWWNGPCLFEA-LDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---D 230 (383)
Q Consensus 157 ~w~~g~~L~~~-l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~---~ 230 (383)
|++. ...+|+|..+.++|+++.|++++ ++.|++++|||.+|+|+.||+|.+.|.+...+|++|... .
T Consensus 175 -------Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~ 247 (600)
T PRK05433 175 -------VLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKM 247 (600)
T ss_pred -------HHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCc
Confidence 4444 45678787788899999999997 568999999999999999999999999999999999875 5
Q ss_pred ccceecCCCCeEEEEEecCC-ccCceeeEEEecCCC
Q 016750 231 NRVRHAGPGENLRIRLSGIE-EEDILSGFVLSSVAK 265 (383)
Q Consensus 231 ~~v~~a~aG~~v~l~l~g~~-~~~i~~G~vl~~~~~ 265 (383)
.++++|.|||++. .+.|++ ..++++||+|++...
T Consensus 248 ~~v~~~~aGdIg~-i~~~ik~~~~~~~Gdtl~~~~~ 282 (600)
T PRK05433 248 VPVDELSAGEVGY-IIAGIKDVRDARVGDTITLAKN 282 (600)
T ss_pred eECcEEcCCCEEE-EecccccccccCCCCEEECCCC
Confidence 7899999999544 455553 367999999988764
No 37
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-32 Score=253.62 Aligned_cols=242 Identities=22% Similarity=0.344 Sum_probs=203.3
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
.+||+++.||||||||-.....+.|++..|+++|||||.||-.++.+.++..|.++|+|||.+|++ +||+..+
T Consensus 41 RvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQTrFVl 113 (603)
T COG1217 41 RVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVL 113 (603)
T ss_pred hhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------CchhhhH
Confidence 579999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC-CCCceEEEccccccccccccccCCCCCCCCc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 161 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g 161 (383)
+.+.++|.+ -|||+||+|++.+ +-+++.+++.+++-.++-.. +-++|++..||..|..-.++.+... .-
T Consensus 114 kKAl~~gL~-PIVVvNKiDrp~A-----rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~----~m 183 (603)
T COG1217 114 KKALALGLK-PIVVINKIDRPDA-----RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEAD----DM 183 (603)
T ss_pred HHHHHcCCC-cEEEEeCCCCCCC-----CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccccc----ch
Confidence 999999998 6789999999654 45677777777777776432 2357899999999985554432110 01
Q ss_pred ccHHH-HhhccCCCCCCCCCCeeEEEEEE-E-ccCCeEEEEEEEEeEEecCCEEEEecCC---cEEEEEEEEEC----Cc
Q 016750 162 PCLFE-ALDRIEITPRDPNGPFRMPIIDK-F-KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DN 231 (383)
Q Consensus 162 ~~L~~-~l~~~~~~~~~~~~p~~~~I~~~-~-~~~G~vv~G~V~sG~l~~gd~v~i~p~~---~~~~V~sI~~~----~~ 231 (383)
.+|++ .++.+|+|..+.++||.|.|... | .-.|++..|||.+|++++||.+.+...+ ...+|..+.-+ +.
T Consensus 184 ~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ 263 (603)
T COG1217 184 APLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERI 263 (603)
T ss_pred hHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeee
Confidence 13555 56778999989999999999876 3 3489999999999999999999988755 45678888665 78
Q ss_pred cceecCCCCeEEEEEecCCccCceeeEEEecCCC
Q 016750 232 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 265 (383)
Q Consensus 232 ~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~ 265 (383)
++++|.|||+|+ +.|+.. +..|+++|+++.
T Consensus 264 ei~eA~AGDIVa--iaG~~~--~~igdTi~d~~~ 293 (603)
T COG1217 264 EIEEAEAGDIVA--IAGLED--INIGDTICDPDN 293 (603)
T ss_pred ecccccccCEEE--EcCccc--ccccccccCCCC
Confidence 899999999999 788855 889999999973
No 38
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-33 Score=262.02 Aligned_cols=229 Identities=21% Similarity=0.285 Sum_probs=192.9
Q ss_pred ecCCCHHHHhhcceeeccceeeeecC---cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETET---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~---~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
+||+++-|||||||+......+.|.+ +.+++||||||.||..++.+.+..+|+|||||||.+|+. +||..
T Consensus 96 ~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvq-------AQT~a 168 (650)
T KOG0462|consen 96 VLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQ-------AQTVA 168 (650)
T ss_pred hhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCch-------HHHHH
Confidence 68999999999999999999999988 999999999999999999999999999999999999984 89999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
.+.++.+.|.. +|.|+||+|++.++ .+.+++++.+.+.. . ..+++.+||++|.|++++
T Consensus 169 nf~lAfe~~L~-iIpVlNKIDlp~ad-----pe~V~~q~~~lF~~---~---~~~~i~vSAK~G~~v~~l---------- 226 (650)
T KOG0462|consen 169 NFYLAFEAGLA-IIPVLNKIDLPSAD-----PERVENQLFELFDI---P---PAEVIYVSAKTGLNVEEL---------- 226 (650)
T ss_pred HHHHHHHcCCe-EEEeeeccCCCCCC-----HHHHHHHHHHHhcC---C---ccceEEEEeccCccHHHH----------
Confidence 99999999997 99999999998765 34556666555543 2 347999999999999984
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC---Ccccee
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRH 235 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~---~~~v~~ 235 (383)
|...++.+|+|....++|||+.+++++. ..|.++.++|..|.+++||+|..+.+++...|+.+.+. ..++..
T Consensus 227 ---L~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~ 303 (650)
T KOG0462|consen 227 ---LEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVE 303 (650)
T ss_pred ---HHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeee
Confidence 4567889999999999999999999984 49999999999999999999999999988888888765 345555
Q ss_pred cCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 236 AGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 236 a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
..||+..-|...--+..+.+.|++++...
T Consensus 304 l~agqvGyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 304 LDAGQVGYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred ecccccceeEecccccccccccceeeecc
Confidence 55555544422211245689999998876
No 39
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.1e-32 Score=251.62 Aligned_cols=229 Identities=21% Similarity=0.358 Sum_probs=195.7
Q ss_pred eecCCCHHHHhhcceeeccceeeeec-----CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCc
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETE-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQ 77 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~-----~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~ 77 (383)
-++|+++.||||||||......+.|. .+.++|||||||-||..++.+++..+.+|||||||+.|+. .|
T Consensus 44 Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGve-------AQ 116 (603)
T COG0481 44 QVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-------AQ 116 (603)
T ss_pred HhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchH-------HH
Confidence 47899999999999999998888764 3788999999999999999999999999999999999983 89
Q ss_pred hHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCC
Q 016750 78 TREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCP 157 (383)
Q Consensus 78 ~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~ 157 (383)
|.....++-..+.. +|-|+||+|+|.++ .+.+++++.+.+ |+. ....+.+||++|.|++++
T Consensus 117 TlAN~YlAle~~Le-IiPViNKIDLP~Ad-----pervk~eIe~~i---Gid---~~dav~~SAKtG~gI~~i------- 177 (603)
T COG0481 117 TLANVYLALENNLE-IIPVLNKIDLPAAD-----PERVKQEIEDII---GID---ASDAVLVSAKTGIGIEDV------- 177 (603)
T ss_pred HHHHHHHHHHcCcE-EEEeeecccCCCCC-----HHHHHHHHHHHh---CCC---cchheeEecccCCCHHHH-------
Confidence 99999999999987 99999999998765 234555555543 554 346889999999999995
Q ss_pred CCCcccHHHHhhccCCCCCCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC---Ccc
Q 016750 158 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNR 232 (383)
Q Consensus 158 w~~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~---~~~ 232 (383)
|.+.++.+|+|..+.++|++..|+++|- -.|.++..||..|++++||++.++.++++..|..+.++ ..+
T Consensus 178 ------Le~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~ 251 (603)
T COG0481 178 ------LEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVK 251 (603)
T ss_pred ------HHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccc
Confidence 4567788999999999999999999984 48999999999999999999999999999999999877 567
Q ss_pred ceecCCCCeEEEEEecC-CccCceeeEEEecCC
Q 016750 233 VRHAGPGENLRIRLSGI-EEEDILSGFVLSSVA 264 (383)
Q Consensus 233 v~~a~aG~~v~l~l~g~-~~~~i~~G~vl~~~~ 264 (383)
.++..||+...+. .|+ +..|.+.||+++...
T Consensus 252 ~~~L~aGeVG~~~-a~iK~v~d~~VGDTiT~~~ 283 (603)
T COG0481 252 VDELKAGEVGYII-AGIKDVRDARVGDTITLAS 283 (603)
T ss_pred cccccCCceeEEE-EeeeecccCcccceEeccC
Confidence 8899999987763 233 346799999999544
No 40
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.97 E-value=1.2e-30 Score=233.49 Aligned_cols=171 Identities=64% Similarity=1.075 Sum_probs=148.9
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|+|++|.+++|++||+|++.....+++.++.++|||||||.+|...++.+++.+|++|+|||+.++.++.+|....++.+
T Consensus 48 ~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~ 127 (219)
T cd01883 48 YAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE 127 (219)
T ss_pred HHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH
Confidence 67899999999999999999999999999999999999999999999999999999999999998755444443478999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
++..+..++++++|+++||||+...++++..++.+.+++..+++.+++.. ..++++|+||++|.|+.+..+ .++||+
T Consensus 128 ~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~-~~~~ii~iSA~tg~gi~~~~~--~~~w~~ 204 (219)
T cd01883 128 HALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNP-KDVPFIPISGLTGDNLIEKSE--NMPWYK 204 (219)
T ss_pred HHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCc-CCceEEEeecCcCCCCCcCCC--CCCCcc
Confidence 99888888876699999999995435567778899999998898887752 247899999999999998764 699999
Q ss_pred cccHHHHhhccCCC
Q 016750 161 GPCLFEALDRIEIT 174 (383)
Q Consensus 161 g~~L~~~l~~~~~~ 174 (383)
|++|++.|+.+.++
T Consensus 205 g~~l~~~l~~~~~~ 218 (219)
T cd01883 205 GPTLLEALDSLEPP 218 (219)
T ss_pred CCcHHHHHhCCCCC
Confidence 99999999988654
No 41
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.96 E-value=2.7e-29 Score=223.02 Aligned_cols=160 Identities=39% Similarity=0.717 Sum_probs=142.3
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
++|++|..++||+||+|++.....+++++.+++|+|||||.+|...+..++..+|++|+|+|++.+.. .++.+
T Consensus 48 ~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-------~~~~~ 120 (208)
T cd04166 48 LALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-------EQTRR 120 (208)
T ss_pred eeeeccCChhhhcCCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-------HhHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999998864 57888
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
++.++...++|++|+++||+|+ .++++++++.+.++++.+++.+++. ..+++++||++|.|+.+... .++||.
T Consensus 121 ~~~~~~~~~~~~iIvviNK~D~--~~~~~~~~~~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~~~~--~~~w~~ 193 (208)
T cd04166 121 HSYILSLLGIRHVVVAVNKMDL--VDYSEEVFEEIVADYLAFAAKLGIE---DITFIPISALDGDNVVSRSE--NMPWYS 193 (208)
T ss_pred HHHHHHHcCCCcEEEEEEchhc--ccCCHHHHHHHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCccCCC--CCCCCC
Confidence 8888888887768889999999 5555667778888888888888865 45799999999999998764 599999
Q ss_pred cccHHHHhhccCCC
Q 016750 161 GPCLFEALDRIEIT 174 (383)
Q Consensus 161 g~~L~~~l~~~~~~ 174 (383)
|++|+++|+.++++
T Consensus 194 g~~~~~~~~~~~~~ 207 (208)
T cd04166 194 GPTLLEHLETVPIA 207 (208)
T ss_pred CCcHHHHHhcCCCC
Confidence 99999999998875
No 42
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.96 E-value=3.8e-28 Score=251.79 Aligned_cols=250 Identities=22% Similarity=0.321 Sum_probs=187.3
Q ss_pred ceecCCCHHHHhhcceeeccceeeee----cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCc
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFET----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQ 77 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~----~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~ 77 (383)
+++||+.++|++||+|++.+...+.| ++++++|+|||||.+|...+.++++.+|++|+|||+..|+. .|
T Consensus 55 ~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~-------~~ 127 (731)
T PRK07560 55 QLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM-------PQ 127 (731)
T ss_pred ceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCC-------cc
Confidence 47899999999999999999887766 57889999999999999999999999999999999999874 79
Q ss_pred hHHHHHHHHHcCCCeEEEEEecCCCCCCC------ccHHHHHHHHHHHHHHHHhcC---------CCCCCCceEEEcccc
Q 016750 78 TREHVMLAKTLGVTKLLLVVNKMDDHTVN------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGL 142 (383)
Q Consensus 78 ~~~~~~~~~~~~i~~~ivviNK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~iSa~ 142 (383)
++.++..+...++| .|+++||||+..++ ..+.++.++.+++..++..+. +.+. +-.+++.|+.
T Consensus 128 t~~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~v~~~sa~ 205 (731)
T PRK07560 128 TETVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVE-DGTVAFGSAL 205 (731)
T ss_pred HHHHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCC-CCcEeeeecc
Confidence 99999998888998 68999999985433 123445555566665555432 1111 1246677998
Q ss_pred ccccccccc------------cC-------CCCCCCC-cccHHHHh-hccCCCCC-------------------------
Q 016750 143 MGLNMKTRV------------DK-------SLCPWWN-GPCLFEAL-DRIEITPR------------------------- 176 (383)
Q Consensus 143 ~g~~i~~~~------------~~-------~~~~w~~-g~~L~~~l-~~~~~~~~------------------------- 176 (383)
.++++.... +. .+..|+. -..|++.+ +.+|.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (731)
T PRK07560 206 YNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNC 285 (731)
T ss_pred cccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeecc
Confidence 887765100 00 0000100 01345543 33555531
Q ss_pred CCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCC
Q 016750 177 DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIE 250 (383)
Q Consensus 177 ~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~ 250 (383)
+.+.|+.+.|++++ +..|.+++|||+||+|++||.|++.+.+.+.+|+.|... ..++++|.|||++++ .|++
T Consensus 286 d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~gl~ 363 (731)
T PRK07560 286 DPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAV--TGLK 363 (731)
T ss_pred CCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEE--Eccc
Confidence 23568899999987 457999999999999999999999999888899999765 578999999999995 5664
Q ss_pred ccCceeeEEEecCC
Q 016750 251 EEDILSGFVLSSVA 264 (383)
Q Consensus 251 ~~~i~~G~vl~~~~ 264 (383)
++.+|++|+.+.
T Consensus 364 --~~~~GdtL~~~~ 375 (731)
T PRK07560 364 --DARAGETVVSVE 375 (731)
T ss_pred --ccccCCEEeCCC
Confidence 477899998765
No 43
>PRK00007 elongation factor G; Reviewed
Probab=99.96 E-value=4.7e-28 Score=249.71 Aligned_cols=241 Identities=21% Similarity=0.240 Sum_probs=184.2
Q ss_pred ceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
+++||++++|++||+|++.....+.|.+++++|+|||||.+|..++.++++.+|++++|||+..|+. .|++++
T Consensus 47 ~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~-------~qt~~~ 119 (693)
T PRK00007 47 AATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVE-------PQSETV 119 (693)
T ss_pred cccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcc-------hhhHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999974 799999
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccc-ccccccccCCCCCC--
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRVDKSLCPW-- 158 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g-~~i~~~~~~~~~~w-- 158 (383)
+..+...++| +|+++||||+...+ +.+..+++++.+.... ....+|+|+..+ .|+.++.......|
T Consensus 120 ~~~~~~~~~p-~iv~vNK~D~~~~~-----~~~~~~~i~~~l~~~~-----~~~~ipisa~~~f~g~~d~~~~~~~~~~~ 188 (693)
T PRK00007 120 WRQADKYKVP-RIAFVNKMDRTGAD-----FYRVVEQIKDRLGANP-----VPIQLPIGAEDDFKGVVDLVKMKAIIWNE 188 (693)
T ss_pred HHHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHhCCCe-----eeEEecCccCCcceEEEEcceeeeeeccc
Confidence 9999999999 67999999995432 4455566655554322 125677777666 22322221111111
Q ss_pred ---------------------------------------------------------------------CCc--------
Q 016750 159 ---------------------------------------------------------------------WNG-------- 161 (383)
Q Consensus 159 ---------------------------------------------------------------------~~g-------- 161 (383)
+.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv 268 (693)
T PRK00007 189 ADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGV 268 (693)
T ss_pred CCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCH
Confidence 111
Q ss_pred ccHHHHh-hccCCCCC--------------------CCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCC
Q 016750 162 PCLFEAL-DRIEITPR--------------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK 218 (383)
Q Consensus 162 ~~L~~~l-~~~~~~~~--------------------~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~ 218 (383)
..|++.+ ..+|.|.. +.++|+...|+++.. ..|.++++||+||+|+.||+|+....+
T Consensus 269 ~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~ 348 (693)
T PRK00007 269 QPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKG 348 (693)
T ss_pred HHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCC
Confidence 1244433 33555431 235688999999874 469999999999999999999987667
Q ss_pred cEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 219 AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 219 ~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
++.+|.+|... ..++++|.|||+++ +.|++. ++.|++|++.+
T Consensus 349 ~~eki~~l~~~~g~~~~~v~~~~aGdI~~--i~gl~~--~~~GdtL~~~~ 394 (693)
T PRK00007 349 KKERIGRILQMHANKREEIKEVRAGDIAA--AVGLKD--TTTGDTLCDEK 394 (693)
T ss_pred ceeEeceeEEeccCCcccccccCCCcEEE--EeCCcc--CCcCCEeeCCC
Confidence 77888888765 57899999999999 566653 78999998765
No 44
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=1.1e-28 Score=215.98 Aligned_cols=155 Identities=32% Similarity=0.513 Sum_probs=138.2
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+++|++++|++||+|++.....|++++++++|+|||||.+|...+.+++..+|++++|||+..|+. .++++++
T Consensus 38 ~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~~~~~~ 110 (195)
T cd01884 38 DEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-------PQTREHL 110 (195)
T ss_pred ccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999873 7999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC-c
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-G 161 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~-g 161 (383)
..+...++|++|+++||||+ .+ +++.++.+.+++..+++.+++++ .+++++|+||++|.|+.+ .++||+ +
T Consensus 111 ~~~~~~~~~~iIvviNK~D~--~~-~~~~~~~~~~~i~~~l~~~g~~~-~~v~iipiSa~~g~n~~~-----~~~w~~~~ 181 (195)
T cd01884 111 LLARQVGVPYIVVFLNKADM--VD-DEELLELVEMEVRELLSKYGFDG-DNTPIVRGSALKALEGDD-----PNKWVKKI 181 (195)
T ss_pred HHHHHcCCCcEEEEEeCCCC--CC-cHHHHHHHHHHHHHHHHHhcccc-cCCeEEEeeCccccCCCC-----CCcchhcH
Confidence 99999999878899999999 43 35567778889999999999863 368999999999999765 379998 7
Q ss_pred ccHHHHhhccCC
Q 016750 162 PCLFEALDRIEI 173 (383)
Q Consensus 162 ~~L~~~l~~~~~ 173 (383)
++|++.|+++.+
T Consensus 182 ~~l~~~l~~~~~ 193 (195)
T cd01884 182 LELLDALDSYIP 193 (195)
T ss_pred hHHHHHHHhCCC
Confidence 999999987643
No 45
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.96 E-value=1.8e-27 Score=236.50 Aligned_cols=248 Identities=17% Similarity=0.214 Sum_probs=188.7
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
.+|++++|++||+|+......+++++++++|||||||.+|...+..+++.+|++|+|+|+..++. .+++.++.
T Consensus 53 ~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~~t~~l~~ 125 (526)
T PRK00741 53 TSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-------PQTRKLME 125 (526)
T ss_pred cCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-------HHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999863 68899999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcC------------------------------------
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG------------------------------------ 127 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 127 (383)
.++..++| +++++||+|+..++ +.++.+++++.+...-
T Consensus 126 ~~~~~~iP-iiv~iNK~D~~~a~-----~~~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~ 199 (526)
T PRK00741 126 VCRLRDTP-IFTFINKLDRDGRE-----PLELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQ 199 (526)
T ss_pred HHHhcCCC-EEEEEECCcccccC-----HHHHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcce
Confidence 99999999 88999999995543 2223333333222100
Q ss_pred -------------------------------------------CCCCCCceEEEccccccccccccccCCCCCCCCcccH
Q 016750 128 -------------------------------------------YNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 164 (383)
Q Consensus 128 -------------------------------------------~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L 164 (383)
+....-+|++..||.++.|+.. |
T Consensus 200 ~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~--------------L 265 (526)
T PRK00741 200 EVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQE--------------F 265 (526)
T ss_pred eeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHH--------------H
Confidence 0001124677778888888777 4
Q ss_pred HHH-hhccCCCCCC---------CCCCeeEEEEEEE-----ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC
Q 016750 165 FEA-LDRIEITPRD---------PNGPFRMPIIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD 229 (383)
Q Consensus 165 ~~~-l~~~~~~~~~---------~~~p~~~~I~~~~-----~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~ 229 (383)
++. +..+|+|... .+.++...|+++. +.+|++++.||+||+|+.|+.|+....+++.++.++...
T Consensus 266 Ld~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~ 345 (526)
T PRK00741 266 LDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTF 345 (526)
T ss_pred HHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEE
Confidence 443 3445555321 2356888888886 358999999999999999999999999988999887554
Q ss_pred ----CccceecCCCCeEEEEEecCCccCceeeEEEecCCC-----CcccccEEEEEEEEecc
Q 016750 230 ----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-----PVAAVTEFIAQLQILEL 282 (383)
Q Consensus 230 ----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~-----~~~~~~~f~a~i~~~~~ 282 (383)
+.++++|.|||+++ +.++ .+++.||+|+..+. .+.+...+.+.+..-+.
T Consensus 346 ~g~~~~~v~~a~aGDIv~--v~~l--~~~~~GDTL~~~~~~~~~~i~~~~P~~~~~v~p~~~ 403 (526)
T PRK00741 346 MAQDREHVEEAYAGDIIG--LHNH--GTIQIGDTFTQGEKLKFTGIPNFAPELFRRVRLKNP 403 (526)
T ss_pred ecCCceECceeCCCCEEE--EECC--CCCccCCCccCCCccccCCCCCCCccEEEEEEECCc
Confidence 68899999999998 5655 34889999987651 12334566777766433
No 46
>PRK12739 elongation factor G; Reviewed
Probab=99.96 E-value=1.1e-27 Score=247.05 Aligned_cols=241 Identities=20% Similarity=0.239 Sum_probs=180.6
Q ss_pred ceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
.++||++++|++||+|++.....++|++++++|+|||||.+|..++..+++.+|++|+|||+..|+. .|++++
T Consensus 45 ~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~-------~qt~~i 117 (691)
T PRK12739 45 AATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVE-------PQSETV 117 (691)
T ss_pred ccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCC-------HHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999873 799999
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccc-cccccccCCCCCCCC
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVDKSLCPWWN 160 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~-~i~~~~~~~~~~w~~ 160 (383)
+..+...++| +|+++||||+...+ +....+++...+....+ ...+|+|+..+. |+.++.......|..
T Consensus 118 ~~~~~~~~~p-~iv~iNK~D~~~~~-----~~~~~~~i~~~l~~~~~-----~~~iPis~~~~f~g~vd~~~~~~~~~~~ 186 (691)
T PRK12739 118 WRQADKYGVP-RIVFVNKMDRIGAD-----FFRSVEQIKDRLGANAV-----PIQLPIGAEDDFKGVIDLIKMKAIIWDD 186 (691)
T ss_pred HHHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHhCCCce-----eEEecccccccceEEEEcchhhhhhccC
Confidence 9999999999 67999999994322 44566666665543211 134455554432 111111101111110
Q ss_pred ----------------------------------------------------------------------------c---
Q 016750 161 ----------------------------------------------------------------------------G--- 161 (383)
Q Consensus 161 ----------------------------------------------------------------------------g--- 161 (383)
+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv 266 (691)
T PRK12739 187 ETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGV 266 (691)
T ss_pred CCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccH
Confidence 0
Q ss_pred ccHHHHh-hccCCCCC-------------------CCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCc
Q 016750 162 PCLFEAL-DRIEITPR-------------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKA 219 (383)
Q Consensus 162 ~~L~~~l-~~~~~~~~-------------------~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~ 219 (383)
..|++.+ ..+|.|.. ++++|+...|++++. ..|.++++||+||+|+.||.|+....++
T Consensus 267 ~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~ 346 (691)
T PRK12739 267 QPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGK 346 (691)
T ss_pred HHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCc
Confidence 1234433 33554421 346789999999874 4799999999999999999999877777
Q ss_pred EEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 220 QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 220 ~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
..+|.+|... ..++++|.|||+++ +.|++. ++.|++|++..
T Consensus 347 ~~~v~~l~~~~g~~~~~v~~~~aGdI~~--i~gl~~--~~~gdtl~~~~ 391 (691)
T PRK12739 347 KERIGRLLQMHANKREEIKEVYAGDIAA--AVGLKD--TTTGDTLCDEK 391 (691)
T ss_pred eEEecceEEEecCCcccccccCCCCEEE--EeCCCc--ccCCCEEeCCC
Confidence 8888888654 57899999999999 456654 78999998765
No 47
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.8e-30 Score=235.75 Aligned_cols=266 Identities=18% Similarity=0.220 Sum_probs=194.3
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
.+|+++.||+|||++..+...|+|+++.++|+|||||+||...+.+.+..+|.|++||||..|+- +||+..++
T Consensus 55 ~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-------~qT~KLfe 127 (528)
T COG4108 55 KSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-------PQTLKLFE 127 (528)
T ss_pred ccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCcc-------HHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999983 89999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC---------------------------------
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV--------------------------------- 130 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 130 (383)
.|+..++| ++-++||+|++..+ +-+-++++.+++.-....+.|+.
T Consensus 128 VcrlR~iP-I~TFiNKlDR~~rd-P~ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~ 205 (528)
T COG4108 128 VCRLRDIP-IFTFINKLDREGRD-PLELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADI 205 (528)
T ss_pred HHhhcCCc-eEEEeeccccccCC-hHHHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCcccccccc
Confidence 99999999 99999999996433 22333343333322222221110
Q ss_pred ------------------------------------------CCCceEEEccccccccccccccCCCCCCCCcccHHHHh
Q 016750 131 ------------------------------------------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEAL 168 (383)
Q Consensus 131 ------------------------------------------~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l 168 (383)
+...|++.-||+.+-|+.. +++.+
T Consensus 206 ~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~--------------~L~~~ 271 (528)
T COG4108 206 VKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDH--------------FLDAL 271 (528)
T ss_pred ccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCccceEehhhhhccCHHH--------------HHHHH
Confidence 0001233333333333333 33333
Q ss_pred hc-cCCCCC---------CCCCCeeEEEEEEE-----ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----
Q 016750 169 DR-IEITPR---------DPNGPFRMPIIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---- 229 (383)
Q Consensus 169 ~~-~~~~~~---------~~~~p~~~~I~~~~-----~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~---- 229 (383)
-. -|+|.. ..+..|...|+++- +++.+++..||.||.+..|.++.....++.+++..-+.+
T Consensus 272 ~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~d 351 (528)
T COG4108 272 VDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQD 351 (528)
T ss_pred HhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhh
Confidence 22 333321 11223444555543 468999999999999999999999999999998887655
Q ss_pred CccceecCCCCeEEEEEecCCccCceeeEEEecCC-----CCcccccEEEEEEEEecccccccccCCcEEEE
Q 016750 230 DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA-----KPVAAVTEFIAQLQILELLDNAIFTAGYKAVL 296 (383)
Q Consensus 230 ~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~-----~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~ 296 (383)
++.+++|.|||++||.-.|. ++.||+++... ..|..+.++.+++..-+.++.+.+++|-+.+.
T Consensus 352 Re~ve~A~aGDIIGl~nhG~----~~IGDT~t~Ge~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~ 419 (528)
T COG4108 352 RETVEEAYAGDIIGLHNHGT----IQIGDTFTEGEKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLA 419 (528)
T ss_pred hhhhhhccCCCeEeccCCCc----eeecceeecCceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 78999999999999766555 88999999876 34677777777777755555566777755443
No 48
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.2e-27 Score=239.78 Aligned_cols=245 Identities=20% Similarity=0.266 Sum_probs=177.7
Q ss_pred eecCCCHHHHhhcceeeccceeeeecC-cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETET-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~-~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
-+||++++|++||+||..+...+.|++ +.|+|||||||-||..++.++++.+|+|++||||..|+. +||...
T Consensus 48 ~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~-------~QTEtv 120 (697)
T COG0480 48 ATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVE-------PQTETV 120 (697)
T ss_pred ccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCee-------ecHHHH
Confidence 479999999999999999999999996 999999999999999999999999999999999999985 899999
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc----CCCCCC-----C-------ceEEEc-cccc-
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS----GYNVKK-----D-------VQFLPI-SGLM- 143 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~-------~~~i~i-Sa~~- 143 (383)
|+++...++| .|+++||||+..++ +....+++...|... +..... . -.+..- ++..
T Consensus 121 ~rqa~~~~vp-~i~fiNKmDR~~a~-----~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~ 194 (697)
T COG0480 121 WRQADKYGVP-RILFVNKMDRLGAD-----FYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYE 194 (697)
T ss_pred HHHHhhcCCC-eEEEEECccccccC-----hhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccc
Confidence 9999999999 67899999996544 334444454444321 000000 0 000001 1111
Q ss_pred ---------ccc------cc--------cccc----C-------------------CCCCCCCc--------ccHHHH-h
Q 016750 144 ---------GLN------MK--------TRVD----K-------------------SLCPWWNG--------PCLFEA-L 168 (383)
Q Consensus 144 ---------g~~------i~--------~~~~----~-------------------~~~~w~~g--------~~L~~~-l 168 (383)
+.+ +. ++.+ . ...|-..| ..|+++ +
T Consensus 195 ~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~ 274 (697)
T COG0480 195 WIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVV 274 (697)
T ss_pred eeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHH
Confidence 110 00 0000 0 01111111 123333 3
Q ss_pred hccCCCC--------------------CCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEE
Q 016750 169 DRIEITP--------------------RDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAI 226 (383)
Q Consensus 169 ~~~~~~~--------------------~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI 226 (383)
+.+|.|. .+.++|+.+.++++.. ..|.+.++||+||+|+.||.++....+++.+|..|
T Consensus 275 ~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l 354 (697)
T COG0480 275 DYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRL 354 (697)
T ss_pred HHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEE
Confidence 4455541 1236889999999874 47898889999999999999999988889999998
Q ss_pred EEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 227 YCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 227 ~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
... +.+++++.||++++ +.|++. ...|+++|+..
T Consensus 355 ~~~~~~~~~~v~~~~AG~I~a--~~Gl~~--~~tGdTl~~~~ 392 (697)
T COG0480 355 LLMHGNEREEVDEVPAGDIVA--LVGLKD--ATTGDTLCDEN 392 (697)
T ss_pred EEccCCceeecccccCccEEE--EEcccc--cccCCeeecCC
Confidence 654 67899999999999 677765 68999999776
No 49
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.95 E-value=4.1e-27 Score=241.37 Aligned_cols=219 Identities=27% Similarity=0.435 Sum_probs=172.5
Q ss_pred HHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC
Q 016750 10 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG 89 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~ 89 (383)
++..+|+|++++.+.+.++++.++|||||||++|...+.++++.+|++|||||+++|+. +||.+++..+...+
T Consensus 317 ~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-------~qT~e~i~~a~~~~ 389 (787)
T PRK05306 317 AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-------PQTIEAINHAKAAG 389 (787)
T ss_pred ccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-------HhHHHHHHHHHhcC
Confidence 34468999999999999999999999999999999999999999999999999999874 79999999999999
Q ss_pred CCeEEEEEecCCCCCCCccHHHHHHHHHHHHH---HHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccHHH
Q 016750 90 VTKLLLVVNKMDDHTVNWSKERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE 166 (383)
Q Consensus 90 i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~ 166 (383)
+| +||++||||++.. +. +.+..++.. +....+ .+++++|+||++|.|++++++. +..
T Consensus 390 vP-iIVviNKiDl~~a--~~---e~V~~eL~~~~~~~e~~g----~~vp~vpvSAktG~GI~eLle~----------I~~ 449 (787)
T PRK05306 390 VP-IIVAINKIDKPGA--NP---DRVKQELSEYGLVPEEWG----GDTIFVPVSAKTGEGIDELLEA----------ILL 449 (787)
T ss_pred Cc-EEEEEECcccccc--CH---HHHHHHHHHhcccHHHhC----CCceEEEEeCCCCCCchHHHHh----------hhh
Confidence 99 9999999999433 22 223333322 111111 2468999999999999997552 111
Q ss_pred HhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC-CccceecCCCCeEE
Q 016750 167 ALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLR 243 (383)
Q Consensus 167 ~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~ 243 (383)
..+ +.......+.|++..|++++ ++.|.+++|+|.+|+|+.||.|++++ ...+|++|+.. +.++++|.||+.|.
T Consensus 450 ~~e-~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~ 526 (787)
T PRK05306 450 QAE-VLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVE 526 (787)
T ss_pred hhh-hhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEE
Confidence 111 11123445788999999987 57899999999999999999999975 56799999874 78999999999999
Q ss_pred EEEecCCccCc-eeeEEEec
Q 016750 244 IRLSGIEEEDI-LSGFVLSS 262 (383)
Q Consensus 244 l~l~g~~~~~i-~~G~vl~~ 262 (383)
+ .|++. + ..|++|+.
T Consensus 527 I--~gl~~--~p~~Gd~l~~ 542 (787)
T PRK05306 527 I--LGLSG--VPQAGDEFVV 542 (787)
T ss_pred E--eCCCC--CCCCCCEEEE
Confidence 4 45543 4 68999884
No 50
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.95 E-value=6.8e-27 Score=234.63 Aligned_cols=218 Identities=29% Similarity=0.454 Sum_probs=169.9
Q ss_pred HHHhhcceeeccceeeeecCc-EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc
Q 016750 10 EERIKGKTVEVGRAHFETETT-RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL 88 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~~~-~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (383)
.+..+|+|++.+...+.+++. .++|||||||++|...+.++++.+|+++||+|+++|.. +|+.+++..++..
T Consensus 114 ~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~-------~qT~e~i~~~~~~ 186 (587)
T TIGR00487 114 QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM-------PQTIEAISHAKAA 186 (587)
T ss_pred cccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC-------HhHHHHHHHHHHc
Confidence 344579999999888888655 99999999999999999999999999999999999874 7999999999999
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCC---CCCCceEEEccccccccccccccCCCCCCCCcccHH
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN---VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 165 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~ 165 (383)
++| +|+++||+|++..+ . +.+.+.+. ..++. +..+.+++|+||++|+|+.++.+. +.
T Consensus 187 ~vP-iIVviNKiDl~~~~--~---e~v~~~L~----~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~----------I~ 246 (587)
T TIGR00487 187 NVP-IIVAINKIDKPEAN--P---DRVKQELS----EYGLVPEDWGGDTIFVPVSALTGDGIDELLDM----------IL 246 (587)
T ss_pred CCC-EEEEEECcccccCC--H---HHHHHHHH----HhhhhHHhcCCCceEEEEECCCCCChHHHHHh----------hh
Confidence 999 99999999995433 2 22223222 22211 012458999999999999996542 11
Q ss_pred HHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEE-CCccceecCCCCeE
Q 016750 166 EALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC-DDNRVRHAGPGENL 242 (383)
Q Consensus 166 ~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG~~v 242 (383)
.+..+.......+.|++++|.+++ ++.|++++|+|.+|+|++||.+.++|. ..+|++|+. +++.+++|.||+.|
T Consensus 247 -~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v 323 (587)
T TIGR00487 247 -LQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPV 323 (587)
T ss_pred -hhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEE
Confidence 111222223345689999999998 678999999999999999999999885 468999998 57899999999999
Q ss_pred EEEEecCCccCc-eeeEEEe
Q 016750 243 RIRLSGIEEEDI-LSGFVLS 261 (383)
Q Consensus 243 ~l~l~g~~~~~i-~~G~vl~ 261 (383)
.+ .|++. + ..|+.+.
T Consensus 324 ~i--~Gl~~--~p~aGd~~~ 339 (587)
T TIGR00487 324 EI--LGLSD--VPAAGDEFI 339 (587)
T ss_pred EE--eCCCC--CCCCCCEEE
Confidence 85 35543 3 5788776
No 51
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.95 E-value=1.1e-26 Score=230.92 Aligned_cols=248 Identities=17% Similarity=0.183 Sum_probs=185.2
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
++|+.++|++||+|+......+++.+++++|||||||.+|...+.++++.+|++|+|||+..++. .+++.++.
T Consensus 54 ~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~~t~~l~~ 126 (527)
T TIGR00503 54 KSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-------TRTRKLME 126 (527)
T ss_pred cCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999998863 68889999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCC----------------------------------
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN---------------------------------- 129 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 129 (383)
.++..++| +|+++||+|+..++ +.++.+++...+....+.
T Consensus 127 ~~~~~~~P-iivviNKiD~~~~~-----~~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~ 200 (527)
T TIGR00503 127 VTRLRDTP-IFTFMNKLDRDIRD-----PLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQ 200 (527)
T ss_pred HHHhcCCC-EEEEEECccccCCC-----HHHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCcee
Confidence 88888998 88999999995432 233444444444321110
Q ss_pred ---------------------------------------------CCCCceEEEccccccccccccccCCCCCCCCcccH
Q 016750 130 ---------------------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 164 (383)
Q Consensus 130 ---------------------------------------------~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L 164 (383)
...-+|++..||.++.|+.. |
T Consensus 201 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~--------------L 266 (527)
T TIGR00503 201 AVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDH--------------F 266 (527)
T ss_pred EeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHH--------------H
Confidence 00112334445555555544 3
Q ss_pred HHH-hhccCCCCCC---------CCCCeeEEEEEEEc-----cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC
Q 016750 165 FEA-LDRIEITPRD---------PNGPFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD 229 (383)
Q Consensus 165 ~~~-l~~~~~~~~~---------~~~p~~~~I~~~~~-----~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~ 229 (383)
++. +..+|+|... .+.++...|+++.. .+|++++.||+||+|+.|++|+....+++.++..++..
T Consensus 267 Ld~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~ 346 (527)
T TIGR00503 267 LDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTF 346 (527)
T ss_pred HHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhh
Confidence 443 3445655321 24567888888753 47999999999999999999999988899999988654
Q ss_pred ----CccceecCCCCeEEEEEecCCccCceeeEEEecCCC-----CcccccEEEEEEEEecc
Q 016750 230 ----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-----PVAAVTEFIAQLQILEL 282 (383)
Q Consensus 230 ----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~-----~~~~~~~f~a~i~~~~~ 282 (383)
+.++++|.|||+++ +.+++ +++.||+|+.... .+.+...+.+.+..-+.
T Consensus 347 ~g~~~~~v~~a~aGDI~~--~~~~~--~~~~GDtl~~~~~~~~~~i~~~~P~~~~~v~~~~~ 404 (527)
T TIGR00503 347 MAGDREHVEEAYAGDIIG--LHNHG--TIQIGDTFTQGEKIKFTGIPNFAPELFRRIRLKDP 404 (527)
T ss_pred hcCCceEcceeCCCCEEE--EECCC--CcccCCEecCCCceeecCCCCCCcceEEEEEECCh
Confidence 68899999999998 56554 4899999987541 12345566676766443
No 52
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.8e-28 Score=215.89 Aligned_cols=319 Identities=20% Similarity=0.344 Sum_probs=249.3
Q ss_pred CCCHHHHhhcceeeccceeeee-----------------------------c--------CcEEEEEeCCCCCChHHHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFET-----------------------------E--------TTRFTILDAPGHKSYVPNMI 48 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~-----------------------------~--------~~~i~liDtPG~~~~~~~~~ 48 (383)
=+++.|-||.+||.++++.-.. . -+.+.|+|+|||.-++.+|+
T Consensus 64 vrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTML 143 (466)
T KOG0466|consen 64 VRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATML 143 (466)
T ss_pred EEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHh
Confidence 3578899999999999875311 0 14578999999999999999
Q ss_pred HhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 016750 49 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 128 (383)
Q Consensus 49 ~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (383)
.++...|+|+|++.+++.-. ++||.||+.....+..+|++++.||+|+ +. ++...+..+++..+++....
T Consensus 144 nGaAvmDaalLlIA~NEsCP------QPQTsEHLaaveiM~LkhiiilQNKiDl--i~--e~~A~eq~e~I~kFi~~t~a 213 (466)
T KOG0466|consen 144 NGAAVMDAALLLIAGNESCP------QPQTSEHLAAVEIMKLKHIIILQNKIDL--IK--ESQALEQHEQIQKFIQGTVA 213 (466)
T ss_pred cchHHhhhhhhhhhcCCCCC------CCchhhHHHHHHHhhhceEEEEechhhh--hh--HHHHHHHHHHHHHHHhcccc
Confidence 99999999999999987653 6999999999999999999999999999 53 34445666677777776553
Q ss_pred CCCCCceEEEccccccccccccccCCCCCCCCcccHHHH-hhccCCCCCCCCCCeeEEEEEEEc----------cCCeEE
Q 016750 129 NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEA-LDRIEITPRDPNGPFRMPIIDKFK----------DMGTVV 197 (383)
Q Consensus 129 ~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~-l~~~~~~~~~~~~p~~~~I~~~~~----------~~G~vv 197 (383)
. ..|++|+||.-+.|++- +.+. ...+|.|.++...|.++.|.++|. -.|.|+
T Consensus 214 e---~aPiiPisAQlkyNId~--------------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgva 276 (466)
T KOG0466|consen 214 E---GAPIIPISAQLKYNIDV--------------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVA 276 (466)
T ss_pred C---CCceeeehhhhccChHH--------------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccc
Confidence 3 67999999999999987 4554 466888889999999999999982 278899
Q ss_pred EEEEEEeEEecCCEEEEecCC------cEE-------EEEEEEECCccceecCCCCeEEEEEe---cCCccCceeeEEEe
Q 016750 198 MGKVESGSVREGDSLLVMPNK------AQV-------KVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLS 261 (383)
Q Consensus 198 ~G~V~sG~l~~gd~v~i~p~~------~~~-------~V~sI~~~~~~v~~a~aG~~v~l~l~---g~~~~~i~~G~vl~ 261 (383)
.|.+..|.|++||.+.+.|+- -.. ++.|++..+.+.+.|.+|..+++..+ .+-..|-..|++|.
T Consensus 277 ggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG 356 (466)
T KOG0466|consen 277 GGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLG 356 (466)
T ss_pred cchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHh
Confidence 999999999999999999963 112 44555556889999999999998655 34445667899999
Q ss_pred cCCCCcccccEEEEEEEEecccc-----------c-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccc
Q 016750 262 SVAKPVAAVTEFIAQLQILELLD-----------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFV 329 (383)
Q Consensus 262 ~~~~~~~~~~~f~a~i~~~~~~~-----------~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l 329 (383)
..+..|....+++...+++..+- + ..+.+|....+++|+.+..++|..+..
T Consensus 357 ~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~----------------- 419 (466)
T KOG0466|consen 357 AVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA----------------- 419 (466)
T ss_pred hccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecccccCceEEEEec-----------------
Confidence 98888888888888877753221 1 346678888999999999999887542
Q ss_pred cCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEE
Q 016750 330 KNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTE 375 (383)
Q Consensus 330 ~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~ 375 (383)
| .+++.|..|+|.+..+. -+++|-+= ...|.+|+|.|.+
T Consensus 420 ---d--~~k~~Lt~P~CteigEk-iAlSRrve-khWRLIGwg~I~~ 458 (466)
T KOG0466|consen 420 ---D--MAKIQLTSPVCTEIGEK-IALSRRVE-KHWRLIGWGQIKA 458 (466)
T ss_pred ---c--eeeeEecCchhcccchh-hhhhhhhh-hheEEecceeEeC
Confidence 2 35688899999987642 23344322 2379999999874
No 53
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.95 E-value=5e-26 Score=235.01 Aligned_cols=241 Identities=21% Similarity=0.253 Sum_probs=176.8
Q ss_pred ceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
.+++|+.++||+||+|++.....++|++++++|||||||.+|...+..+++.+|++++|||+..|+. .++.++
T Consensus 47 ~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~ 119 (689)
T TIGR00484 47 AATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQ-------PQSETV 119 (689)
T ss_pred ccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCC-------hhHHHH
Confidence 4889999999999999999999999999999999999999999999999999999999999999873 688999
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccc-ccccc----------
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTR---------- 150 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~-~i~~~---------- 150 (383)
+..+...++| +++++||+|+..++ +....+++...+....+ ...+|+|+..+. ++.++
T Consensus 120 ~~~~~~~~~p-~ivviNK~D~~~~~-----~~~~~~~i~~~l~~~~~-----~~~ipis~~~~~~~~id~~~~~~~~~~~ 188 (689)
T TIGR00484 120 WRQANRYEVP-RIAFVNKMDKTGAN-----FLRVVNQIKQRLGANAV-----PIQLPIGAEDNFIGVIDLVEMKAYFFNG 188 (689)
T ss_pred HHHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHhCCCce-----eEEeccccCCCceEEEECccceEEeccc
Confidence 9999999999 77899999995432 33444555444432111 123444443332 00000
Q ss_pred -------------------------------------c-----------------------cCCCCCCCCc--------c
Q 016750 151 -------------------------------------V-----------------------DKSLCPWWNG--------P 162 (383)
Q Consensus 151 -------------------------------------~-----------------------~~~~~~w~~g--------~ 162 (383)
+ .....|-+.| .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~ 268 (689)
T TIGR00484 189 DKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQ 268 (689)
T ss_pred CCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHH
Confidence 0 0000111111 2
Q ss_pred cHHHHh-hccCCCCC-------------------CCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcE
Q 016750 163 CLFEAL-DRIEITPR-------------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQ 220 (383)
Q Consensus 163 ~L~~~l-~~~~~~~~-------------------~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~ 220 (383)
.|++.+ ..+|.|.. +.++|+.+.|+++.. ..|.++++||+||+|+.||.|+....+..
T Consensus 269 ~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~ 348 (689)
T TIGR00484 269 LLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKK 348 (689)
T ss_pred HHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCce
Confidence 244444 33554431 235688999999873 57999999999999999999998776777
Q ss_pred EEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 221 VKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 221 ~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
.+|..|... ..++++|.|||+++ +.|++ ++..|++|++..
T Consensus 349 ~~i~~l~~~~g~~~~~v~~~~aGdI~~--i~gl~--~~~~gdtl~~~~ 392 (689)
T TIGR00484 349 ERVGRLVKMHANNREEIKEVRAGDICA--AIGLK--DTTTGDTLCDPK 392 (689)
T ss_pred EEecceEEeecCCcccccccCCCCEEE--EcCCC--CCCCCCEEeCCC
Confidence 788888654 57899999999999 46665 368999998765
No 54
>PRK13351 elongation factor G; Reviewed
Probab=99.95 E-value=8.2e-26 Score=233.91 Aligned_cols=231 Identities=22% Similarity=0.281 Sum_probs=181.9
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+.+|+.++|++||+|+......+.|.+++++|||||||.+|...+..+++.+|++++|+|++.+.. .++.+++
T Consensus 46 ~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~-------~~~~~~~ 118 (687)
T PRK13351 46 TVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQ-------PQTETVW 118 (687)
T ss_pred ccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999998863 6788899
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcC-----------------------------------
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG----------------------------------- 127 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 127 (383)
..+...++| +++++||+|+..++ +....++++..+....
T Consensus 119 ~~~~~~~~p-~iiviNK~D~~~~~-----~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~ 192 (687)
T PRK13351 119 RQADRYGIP-RLIFINKMDRVGAD-----LFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGST 192 (687)
T ss_pred HHHHhcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCc
Confidence 999999998 78899999996543 3333333333322100
Q ss_pred -----------------------------------------CC-------------CCCCceEEEccccccccccccccC
Q 016750 128 -----------------------------------------YN-------------VKKDVQFLPISGLMGLNMKTRVDK 153 (383)
Q Consensus 128 -----------------------------------------~~-------------~~~~~~~i~iSa~~g~~i~~~~~~ 153 (383)
+. ...-+|++..||++|.|+..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~L--- 269 (687)
T PRK13351 193 VEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPL--- 269 (687)
T ss_pred eEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHH---
Confidence 00 011235666688888888874
Q ss_pred CCCCCCCcccHHHH-hhccCCCCC------------------CCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEE
Q 016750 154 SLCPWWNGPCLFEA-LDRIEITPR------------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSL 212 (383)
Q Consensus 154 ~~~~w~~g~~L~~~-l~~~~~~~~------------------~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v 212 (383)
++. +..+|.|.. ++++|+.+.|++++. +.|.++++||+||+|+.||+|
T Consensus 270 -----------Ld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v 338 (687)
T PRK13351 270 -----------LDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQL 338 (687)
T ss_pred -----------HHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEE
Confidence 433 344554421 346789999999874 579999999999999999999
Q ss_pred EEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 213 LVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 213 ~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
++.+.+...+|..|... ..++++|.|||+++ +.|++. +..|++|++..
T Consensus 339 ~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~--i~gl~~--~~~gdtl~~~~ 390 (687)
T PRK13351 339 YNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVA--VAGLKE--LETGDTLHDSA 390 (687)
T ss_pred EeCCCCCceEeeeEEEEccCCeeECCccCCCCEEE--EECccc--CccCCEEeCCC
Confidence 99998888888888554 58899999999997 677654 67899998765
No 55
>PRK12740 elongation factor G; Reviewed
Probab=99.94 E-value=9.4e-26 Score=233.07 Aligned_cols=232 Identities=22% Similarity=0.313 Sum_probs=181.7
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+++|++++||+||+|++.....+.++++.++|||||||.+|...+..+++.+|++++|+|++.+.. .++..++
T Consensus 33 ~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~-------~~~~~~~ 105 (668)
T PRK12740 33 TTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVE-------PQTETVW 105 (668)
T ss_pred ccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcC-------HHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999998763 5788888
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc------------------------------------
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS------------------------------------ 126 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 126 (383)
..+...++| +++++||+|+...+ +....+++++.+...
T Consensus 106 ~~~~~~~~p-~iiv~NK~D~~~~~-----~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~ 179 (668)
T PRK12740 106 RQAEKYGVP-RIIFVNKMDRAGAD-----FFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEE 179 (668)
T ss_pred HHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEE
Confidence 888889998 78899999995432 222333333322110
Q ss_pred -------------------------------------CCC-------------CCCCceEEEccccccccccccccCCCC
Q 016750 127 -------------------------------------GYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLC 156 (383)
Q Consensus 127 -------------------------------------~~~-------------~~~~~~~i~iSa~~g~~i~~~~~~~~~ 156 (383)
.+. ....+|++..||.+|.|+..+++
T Consensus 180 ~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd---- 255 (668)
T PRK12740 180 IEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLD---- 255 (668)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHH----
Confidence 000 01134677789999999988432
Q ss_pred CCCCcccHHHHhhccCCCC-----------------CCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecC
Q 016750 157 PWWNGPCLFEALDRIEITP-----------------RDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPN 217 (383)
Q Consensus 157 ~w~~g~~L~~~l~~~~~~~-----------------~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~ 217 (383)
.++..+|+|. .+.++|+.+.|++++. ..|.++++||++|+|++||+|++.+.
T Consensus 256 ---------~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~ 326 (668)
T PRK12740 256 ---------AVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGT 326 (668)
T ss_pred ---------HHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCC
Confidence 2334455442 2446789999999874 57999999999999999999999998
Q ss_pred CcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 218 KAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 218 ~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
++..+|..|... ..++++|.|||++++ .|++ .+++|++|++..
T Consensus 327 ~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i--~gl~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 327 GKKERVGRLYRMHGKQREEVDEAVAGDIVAV--AKLK--DAATGDTLCDKG 373 (668)
T ss_pred CCcEEecceeeecCCCccccCccCCCCEEEE--eccC--ccCCCCEEeCCC
Confidence 877777777543 588999999999995 4665 489999998654
No 56
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.93 E-value=4.4e-25 Score=228.39 Aligned_cols=249 Identities=20% Similarity=0.331 Sum_probs=176.3
Q ss_pred eecCCCHHHHhhcceeecccee----eeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch
Q 016750 3 YIMDTNEEERIKGKTVEVGRAH----FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT 78 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~----~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~ 78 (383)
+++|+.++|++||+|++..... +++.+++++|||||||.+|...+..+++.+|++|+|+|+..|+. .++
T Consensus 55 ~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~-------~~t 127 (720)
T TIGR00490 55 LYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVM-------PQT 127 (720)
T ss_pred eecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCC-------ccH
Confidence 5689999999999999988765 56788999999999999999999999999999999999999874 789
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCCcc------HHHHHHHHHHHHHHHHhc-C--------CCCCCCceEEEccccc
Q 016750 79 REHVMLAKTLGVTKLLLVVNKMDDHTVNWS------KERYDEIESKMTPFLKAS-G--------YNVKKDVQFLPISGLM 143 (383)
Q Consensus 79 ~~~~~~~~~~~i~~~ivviNK~D~~~~~~~------~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~i~iSa~~ 143 (383)
.+++..+...++| .++++||+|+..+++. ++++......+...+... + +.+. +......|++.
T Consensus 128 ~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~f~s~~~ 205 (720)
T TIGR00490 128 ETVLRQALKENVK-PVLFINKVDRLINELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVE-DGSVAFGSAYY 205 (720)
T ss_pred HHHHHHHHHcCCC-EEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechh-hCCHHHHhhhh
Confidence 9999998888998 6799999999543321 233444444444444321 0 0000 01122234444
Q ss_pred ccccc------------cccc----C---CCCCCCC-cccHHHHh-hccCCCC-------------------------CC
Q 016750 144 GLNMK------------TRVD----K---SLCPWWN-GPCLFEAL-DRIEITP-------------------------RD 177 (383)
Q Consensus 144 g~~i~------------~~~~----~---~~~~w~~-g~~L~~~l-~~~~~~~-------------------------~~ 177 (383)
+++.. ++.. . .+..|.. -..|++.+ ..+|.|. ++
T Consensus 206 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d 285 (720)
T TIGR00490 206 NWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCD 285 (720)
T ss_pred cccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCC
Confidence 42211 0000 0 0001110 12344433 2345442 12
Q ss_pred CCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCc
Q 016750 178 PNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEE 251 (383)
Q Consensus 178 ~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~ 251 (383)
.++|+...|+++. ++.|++++|||+||+|++||.|++.+.+...+|+.|+.. ..++++|.|||+|++ .|++
T Consensus 286 ~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~- 362 (720)
T TIGR00490 286 PKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAV--IGLK- 362 (720)
T ss_pred CCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEE--ECcc-
Confidence 3568899999986 468999999999999999999999999999999999765 568999999999985 5664
Q ss_pred cCceeeEEEecCC
Q 016750 252 EDILSGFVLSSVA 264 (383)
Q Consensus 252 ~~i~~G~vl~~~~ 264 (383)
++.+|++|+.++
T Consensus 363 -~~~~GdtL~~~~ 374 (720)
T TIGR00490 363 -DAVAGETICTTV 374 (720)
T ss_pred -ccccCceeecCC
Confidence 478999998765
No 57
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.93 E-value=7.3e-25 Score=222.89 Aligned_cols=221 Identities=24% Similarity=0.383 Sum_probs=167.0
Q ss_pred HHHhhcceeeccceeeeec----CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 10 EERIKGKTVEVGRAHFETE----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~----~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.++.+|+|+++..+.+.+. +..++|||||||+.|...+.+++..+|++|||||+++|.. +|+.+++..+
T Consensus 271 ~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~-------~QT~E~I~~~ 343 (742)
T CHL00189 271 QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVK-------PQTIEAINYI 343 (742)
T ss_pred cccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC-------hhhHHHHHHH
Confidence 4556899999887776653 5899999999999999999999999999999999999874 7999999999
Q ss_pred HHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHH---HHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcc
Q 016750 86 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGP 162 (383)
Q Consensus 86 ~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~ 162 (383)
...++| +|+++||+|++..+ ++.+.+++... ....+ ..++++++||++|.|+.++.+.
T Consensus 344 k~~~iP-iIVViNKiDl~~~~-----~e~v~~eL~~~~ll~e~~g----~~vpvv~VSAktG~GIdeLle~--------- 404 (742)
T CHL00189 344 QAANVP-IIVAINKIDKANAN-----TERIKQQLAKYNLIPEKWG----GDTPMIPISASQGTNIDKLLET--------- 404 (742)
T ss_pred HhcCce-EEEEEECCCccccC-----HHHHHHHHHHhccchHhhC----CCceEEEEECCCCCCHHHHHHh---------
Confidence 999998 89999999994322 23333333221 11122 2468999999999999996541
Q ss_pred cHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEE-CCccceecCCC
Q 016750 163 CLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC-DDNRVRHAGPG 239 (383)
Q Consensus 163 ~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG 239 (383)
|... ..+.......+.|+...|.++. ++.|++++|+|.+|+|+.||.+.++| ...+|+++.. .+.++++|.||
T Consensus 405 -I~~l-~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pg 480 (742)
T CHL00189 405 -ILLL-AEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPS 480 (742)
T ss_pred -hhhh-hhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCC
Confidence 1111 1111222344567888888876 57999999999999999999999987 4579999974 47899999999
Q ss_pred CeEEEEEecCCccCceeeEEEecC
Q 016750 240 ENLRIRLSGIEEEDILSGFVLSSV 263 (383)
Q Consensus 240 ~~v~l~l~g~~~~~i~~G~vl~~~ 263 (383)
+.|. +.|++. ....|+.+..-
T Consensus 481 diV~--I~gl~~-~~~~Gd~l~v~ 501 (742)
T CHL00189 481 SVVE--IWGLSS-VPATGEHFQVF 501 (742)
T ss_pred CceE--ecCccc-CCCCCCEEEEe
Confidence 9998 455532 34567776543
No 58
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.8e-25 Score=212.04 Aligned_cols=230 Identities=23% Similarity=0.253 Sum_probs=176.5
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+||+++.||+||||+.....++.|.++.+++||||||-||.-++.++++..|.|++|+|+..|+. .||...++
T Consensus 78 ~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVq-------sQt~tV~r 150 (721)
T KOG0465|consen 78 TMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVE-------SQTETVWR 150 (721)
T ss_pred eeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEccccee-------hhhHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999983 89999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc-------------------------------------
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS------------------------------------- 126 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 126 (383)
++++.++| .|.++||||+-+++. ....+.+...+...
T Consensus 151 Q~~ry~vP-~i~FiNKmDRmGa~~-----~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~ 224 (721)
T KOG0465|consen 151 QMKRYNVP-RICFINKMDRMGASP-----FRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVR 224 (721)
T ss_pred HHHhcCCC-eEEEEehhhhcCCCh-----HHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeE
Confidence 99999999 668999999944321 11122222211100
Q ss_pred --------------------------------------CCC-------------CCCCceEEEccccccccccccccCCC
Q 016750 127 --------------------------------------GYN-------------VKKDVQFLPISGLMGLNMKTRVDKSL 155 (383)
Q Consensus 127 --------------------------------------~~~-------------~~~~~~~i~iSa~~g~~i~~~~~~~~ 155 (383)
... ...-+|++.-||+++.|+.-+++
T Consensus 225 ~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLD--- 301 (721)
T KOG0465|consen 225 KDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLD--- 301 (721)
T ss_pred eccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHH---
Confidence 000 01112456667777777766432
Q ss_pred CCCCCcccHHHHhhccCCCCC--------------------CCCC-CeeEEEEEEEcc-CCeEEEEEEEEeEEecCCEEE
Q 016750 156 CPWWNGPCLFEALDRIEITPR--------------------DPNG-PFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLL 213 (383)
Q Consensus 156 ~~w~~g~~L~~~l~~~~~~~~--------------------~~~~-p~~~~I~~~~~~-~G~vv~G~V~sG~l~~gd~v~ 213 (383)
..++.+|.|.. ..++ ||....++...| .|..-+.||++|+|++||.++
T Consensus 302 ----------AVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqLTyvRvYqG~L~kG~~iy 371 (721)
T KOG0465|consen 302 ----------AVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRFGQLTYVRVYQGTLSKGDTIY 371 (721)
T ss_pred ----------HHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCccceEEEEEeeeeecCCcEEE
Confidence 34444443310 0122 777777776644 588999999999999999999
Q ss_pred EecCCcEEEEEEE-EEC---CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 214 VMPNKAQVKVLAI-YCD---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 214 i~p~~~~~~V~sI-~~~---~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
....+++++|..+ .+| .++|+++.|||+++ |.|+ |...||+++++.
T Consensus 372 N~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~a--lfGi---dcasGDTftd~~ 421 (721)
T KOG0465|consen 372 NVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICA--LFGI---DCASGDTFTDKQ 421 (721)
T ss_pred ecCCCceeEhHHHhHhcccccchhhhhhccceee--eecc---ccccCceeccCc
Confidence 9999999998887 344 58999999999999 6777 678999999883
No 59
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.8e-24 Score=204.29 Aligned_cols=205 Identities=27% Similarity=0.459 Sum_probs=161.0
Q ss_pred hcceeeccceeeeec---CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCC
Q 016750 14 KGKTVEVGRAHFETE---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 90 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~---~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i 90 (383)
-|+|..++.+.+.++ ...++|+|||||+-|.....+|.+.+|.++||||+++|++ +||.|-+.+++..++
T Consensus 36 GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~-------pQTiEAI~hak~a~v 108 (509)
T COG0532 36 GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVM-------PQTIEAINHAKAAGV 108 (509)
T ss_pred CceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcc-------hhHHHHHHHHHHCCC
Confidence 489999999999985 4799999999999999999999999999999999999985 899999999999999
Q ss_pred CeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC---CCCceEEEccccccccccccccCCCCCCCCcccHHHH
Q 016750 91 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEA 167 (383)
Q Consensus 91 ~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~ 167 (383)
| +||++||||++..+ ...+..+++ ..|+.+ ..++.|+|+||++|+|+.+|++. .-.
T Consensus 109 P-~iVAiNKiDk~~~n-----p~~v~~el~----~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~-----------ill 167 (509)
T COG0532 109 P-IVVAINKIDKPEAN-----PDKVKQELQ----EYGLVPEEWGGDVIFVPVSAKTGEGIDELLEL-----------ILL 167 (509)
T ss_pred C-EEEEEecccCCCCC-----HHHHHHHHH----HcCCCHhhcCCceEEEEeeccCCCCHHHHHHH-----------HHH
Confidence 9 99999999996544 223333333 235442 45689999999999999996541 111
Q ss_pred hhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC-CccceecCCCCeEEE
Q 016750 168 LDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 244 (383)
Q Consensus 168 l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l 244 (383)
+.....-...++.+.+..|.++- +|.|.+++.-|..|+|++||.+..+... .+|+.+... ..++..+.++..+.
T Consensus 168 ~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~--g~I~t~v~~~~~~i~~a~ps~~v~- 244 (509)
T COG0532 168 LAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEY--GRVRTMVDDLGKPIKEAGPSKPVE- 244 (509)
T ss_pred HHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCC--CceEEeehhcCCCccccCCCCCeE-
Confidence 22222223455788889999886 7899999999999999999999996554 467776543 67888888886666
Q ss_pred EEecCC
Q 016750 245 RLSGIE 250 (383)
Q Consensus 245 ~l~g~~ 250 (383)
+.|++
T Consensus 245 -i~g~~ 249 (509)
T COG0532 245 -ILGLS 249 (509)
T ss_pred -Eeccc
Confidence 44443
No 60
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.92 E-value=7.6e-24 Score=221.61 Aligned_cols=228 Identities=22% Similarity=0.373 Sum_probs=169.4
Q ss_pred HHHHhhcceeeccceeeeecCc------------------EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCcccc
Q 016750 9 EEERIKGKTVEVGRAHFETETT------------------RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 70 (383)
Q Consensus 9 ~~E~~rG~Ti~~~~~~~~~~~~------------------~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~ 70 (383)
.++...|||++++...+.++.. .++|||||||++|...+..+++.+|++++|+|+++|..
T Consensus 487 ~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~-- 564 (1049)
T PRK14845 487 AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFK-- 564 (1049)
T ss_pred ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCC--
Confidence 3566789999999988876521 28999999999998888888899999999999998863
Q ss_pred ccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc---------------HHHHHHHHHH---HHHHHHhcCCCC--
Q 016750 71 GFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS---------------KERYDEIESK---MTPFLKASGYNV-- 130 (383)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~---------------~~~~~~~~~~---~~~~~~~~~~~~-- 130 (383)
+|+.+++..++..++| +|+++||+|+.. .|. +..+.++.++ +...|...|+.+
T Consensus 565 -----~qT~e~I~~lk~~~iP-iIVViNKiDL~~-~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~ 637 (1049)
T PRK14845 565 -----PQTIEAINILRQYKTP-FVVAANKIDLIP-GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADR 637 (1049)
T ss_pred -----HhHHHHHHHHHHcCCC-EEEEEECCCCcc-ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhh
Confidence 7999999999999998 899999999942 222 1112222222 222245555542
Q ss_pred -------CCCceEEEccccccccccccccCCCCCCCCcccHHHHhhccC------CCCCCCCCCeeEEEEEEE--ccCCe
Q 016750 131 -------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE------ITPRDPNGPFRMPIIDKF--KDMGT 195 (383)
Q Consensus 131 -------~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~~~------~~~~~~~~p~~~~I~~~~--~~~G~ 195 (383)
...++++|+||++|+|++++. +.|..+. ......+.|++++|.+++ +|.|+
T Consensus 638 ~~~~~d~~~~v~iVpVSA~tGeGId~Ll--------------~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~ 703 (1049)
T PRK14845 638 FDRVQDFTRTVAIVPVSAKTGEGIPELL--------------MMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGT 703 (1049)
T ss_pred hhhhhhcCCCceEEEEEcCCCCCHHHHH--------------HHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCcee
Confidence 346799999999999999854 3332211 122345789999999998 68999
Q ss_pred EEEEEEEEeEEecCCEEEEecCCc--EEEEEEEEEC------------CccceecCCCCeEEEEEecCCccCceeeEEEe
Q 016750 196 VVMGKVESGSVREGDSLLVMPNKA--QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 261 (383)
Q Consensus 196 vv~G~V~sG~l~~gd~v~i~p~~~--~~~V~sI~~~------------~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~ 261 (383)
+++|.|.+|+|++||.+.++|.+. ..+|+++... ..++++|.|..-|.+...|++. +..|+-+.
T Consensus 704 vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~--~~aG~~~~ 781 (1049)
T PRK14845 704 TIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEE--VLAGSPIR 781 (1049)
T ss_pred EEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccc--cCCCCeEE
Confidence 999999999999999999999765 6799999742 2467788888877765455543 35565443
No 61
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.4e-24 Score=206.00 Aligned_cols=201 Identities=29% Similarity=0.440 Sum_probs=162.6
Q ss_pred hcceeeccceeeee-cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCe
Q 016750 14 KGKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 92 (383)
Q Consensus 14 rG~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (383)
-|||..++...+.. ++..++|+|||||.-|..+..+|++.+|.++|||.|.+|++ +||.|.+..++..++|
T Consensus 184 GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVm-------pQT~EaIkhAk~A~Vp- 255 (683)
T KOG1145|consen 184 GGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVM-------PQTLEAIKHAKSANVP- 255 (683)
T ss_pred CCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCcc-------HhHHHHHHHHHhcCCC-
Confidence 48999998877664 68899999999999999999999999999999999999996 8999999999999999
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHH---HHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccHHHHhh
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALD 169 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~ 169 (383)
+||++||+|.++++. + .+++++.. .++.+| .+++++|+||++|+|++.|.+. ++ .+.
T Consensus 256 iVvAinKiDkp~a~p--e---kv~~eL~~~gi~~E~~G----GdVQvipiSAl~g~nl~~L~ea----------il-l~A 315 (683)
T KOG1145|consen 256 IVVAINKIDKPGANP--E---KVKRELLSQGIVVEDLG----GDVQVIPISALTGENLDLLEEA----------IL-LLA 315 (683)
T ss_pred EEEEEeccCCCCCCH--H---HHHHHHHHcCccHHHcC----CceeEEEeecccCCChHHHHHH----------HH-HHH
Confidence 999999999987652 2 33333322 233333 5789999999999999985442 11 111
Q ss_pred ccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC-CccceecCCCCeEEE
Q 016750 170 RIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 244 (383)
Q Consensus 170 ~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l 244 (383)
.+..-..++.+|...+|.+.. +++|.+++.-|..|+|++|+.+..+ ..=.+|++++-+ ++++++|.|++.|.+
T Consensus 316 e~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G--~~w~KVr~l~D~nGk~i~~A~Ps~pv~V 391 (683)
T KOG1145|consen 316 EVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAG--KSWCKVRALFDHNGKPIDEATPSQPVEV 391 (683)
T ss_pred HHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEe--chhhhhhhhhhcCCCCccccCCCCceEe
Confidence 122223456889999999886 7899999999999999999999884 445689999765 789999999999985
No 62
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.92 E-value=3.2e-23 Score=208.67 Aligned_cols=207 Identities=23% Similarity=0.364 Sum_probs=157.1
Q ss_pred EEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc---
Q 016750 32 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS--- 108 (383)
Q Consensus 32 i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~--- 108 (383)
++|||||||++|...+.++++.+|++++|+|++.|.. +++.+++..+...++| +++++||+|+.. .|.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~-------~qt~e~i~~~~~~~vp-iIvviNK~D~~~-~~~~~~ 143 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQ-------PQTIEAINILKRRKTP-FVVAANKIDRIP-GWKSTE 143 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcCCch-hhhhhc
Confidence 7999999999999999999999999999999999863 7999999999999999 899999999841 232
Q ss_pred ---------------HHHHHHHHHHHHHHHHhcCCCC---------CCCceEEEccccccccccccccCCCCCCCCcccH
Q 016750 109 ---------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 164 (383)
Q Consensus 109 ---------------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L 164 (383)
+++|++...++...|...|+.+ ..+++++|+||++|+|+.++.+. +
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~----------i 213 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMV----------L 213 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHH----------H
Confidence 2344555555666677667643 24678999999999999986542 2
Q ss_pred HHHhhc-cC-CCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCc--EEEEEEEEEC---------
Q 016750 165 FEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA--QVKVLAIYCD--------- 229 (383)
Q Consensus 165 ~~~l~~-~~-~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~--~~~V~sI~~~--------- 229 (383)
...... ++ ......+.|++++|.+++ ++.|++++|+|.+|+|++||.+.++|.+. ..+|++|..+
T Consensus 214 ~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~ 293 (586)
T PRK04004 214 AGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDP 293 (586)
T ss_pred HHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhcccc
Confidence 221211 21 122345789999999998 67999999999999999999999999874 5699999876
Q ss_pred ---CccceecCCCCeEEEEEecCCccCceeeEE
Q 016750 230 ---DNRVRHAGPGENLRIRLSGIEEEDILSGFV 259 (383)
Q Consensus 230 ---~~~v~~a~aG~~v~l~l~g~~~~~i~~G~v 259 (383)
..++++|.|..-|-+...|++. +..|+-
T Consensus 294 ~~~~~~~~~~~~~~~v~i~~~gl~~--~~~g~~ 324 (586)
T PRK04004 294 EDKFKPVDEVVAAAGVKISAPDLED--ALAGSP 324 (586)
T ss_pred ccccccccccCCCCceEEEeCCccc--cCCCCe
Confidence 2567777777766654445543 344543
No 63
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.91 E-value=1.6e-23 Score=219.85 Aligned_cols=251 Identities=20% Similarity=0.306 Sum_probs=171.9
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec----------------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~----------------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
++++|+.++|++||+|++.+...+.|. ++.++|||||||.+|..++.++++.+|+||+||||.+
T Consensus 54 ~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~ 133 (843)
T PLN00116 54 VRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (843)
T ss_pred eeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC
Confidence 478999999999999999988888773 6789999999999999999999999999999999999
Q ss_pred CccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCc--cH----HHHHHHHHHHHHHHHhcC--------CCCC
Q 016750 66 GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW--SK----ERYDEIESKMTPFLKASG--------YNVK 131 (383)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~--~~----~~~~~~~~~~~~~~~~~~--------~~~~ 131 (383)
|+. .||+.++..+...++| +|+++||||++..++ +. .++..+.++++..+..++ +.|.
T Consensus 134 Gv~-------~~t~~~~~~~~~~~~p-~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~ 205 (843)
T PLN00116 134 GVC-------VQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPE 205 (843)
T ss_pred CCc-------ccHHHHHHHHHHCCCC-EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccC
Confidence 984 7999999999999999 789999999952221 12 567777777774333321 1010
Q ss_pred CCceEEEcccccccccc---------------------------------------------------------------
Q 016750 132 KDVQFLPISGLMGLNMK--------------------------------------------------------------- 148 (383)
Q Consensus 132 ~~~~~i~iSa~~g~~i~--------------------------------------------------------------- 148 (383)
+. .++..|+..|+.+.
T Consensus 206 ~~-nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e 284 (843)
T PLN00116 206 KG-TVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIIN 284 (843)
T ss_pred CC-eeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHH
Confidence 00 11222221110000
Q ss_pred -----------cccc--------------------CCCCCCCCc-ccHHHHh-hccCCCCC-------------------
Q 016750 149 -----------TRVD--------------------KSLCPWWNG-PCLFEAL-DRIEITPR------------------- 176 (383)
Q Consensus 149 -----------~~~~--------------------~~~~~w~~g-~~L~~~l-~~~~~~~~------------------- 176 (383)
..++ ..+.||+.| ..|++.+ ..+|.|..
T Consensus 285 ~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~ 364 (843)
T PLN00116 285 TCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYA 364 (843)
T ss_pred HHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCcccc
Confidence 0000 012456554 3455544 33554420
Q ss_pred ------CCCCCeeEEEEEEE--ccCCe-EEEEEEEEeEEecCCEEEEecCC----cE-----EEEEEEEEC----Cccce
Q 016750 177 ------DPNGPFRMPIIDKF--KDMGT-VVMGKVESGSVREGDSLLVMPNK----AQ-----VKVLAIYCD----DNRVR 234 (383)
Q Consensus 177 ------~~~~p~~~~I~~~~--~~~G~-vv~G~V~sG~l~~gd~v~i~p~~----~~-----~~V~sI~~~----~~~v~ 234 (383)
++++|+...|++++ +..|. ++++||+||+|+.||.|++...+ .. .+|..|... ..+++
T Consensus 365 ~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~ 444 (843)
T PLN00116 365 TAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVE 444 (843)
T ss_pred chhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECc
Confidence 22467888899886 34677 89999999999999999865432 11 355555433 47899
Q ss_pred ecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 235 HAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 235 ~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
+|.||++++ +.|++. -+..|++|++..
T Consensus 445 ~~~AGdI~a--i~gl~~-~~~~gdTL~~~~ 471 (843)
T PLN00116 445 DVPCGNTVA--MVGLDQ-FITKNATLTNEK 471 (843)
T ss_pred EECCCCEEE--EEeecc-cccCCceecCCc
Confidence 999999999 455532 134488887654
No 64
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.91 E-value=2.7e-24 Score=188.01 Aligned_cols=135 Identities=35% Similarity=0.609 Sum_probs=119.5
Q ss_pred eecCCCHHHHhhcceeeccceeee--ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFE--TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~--~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
..+|..++|++||+|++.....+. ++++.++|+|||||.+|.+++.++++.+|++|+|||+.+|.. .|+.+
T Consensus 41 ~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~-------~~~~~ 113 (188)
T PF00009_consen 41 AFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQ-------PQTEE 113 (188)
T ss_dssp CHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBST-------HHHHH
T ss_pred ccccccchhhhcccccccccccccccccccceeecccccccceeecccceecccccceeeeecccccc-------ccccc
Confidence 357899999999999999999999 999999999999999999999999999999999999999874 79999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHH-HHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT-PFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
++..+..+++| +|+++||||+ . +.++.+..+++. .+++..++.....++++|+||++|.|++++
T Consensus 114 ~l~~~~~~~~p-~ivvlNK~D~--~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 114 HLKILRELGIP-IIVVLNKMDL--I---EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp HHHHHHHTT-S-EEEEEETCTS--S---HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred ccccccccccc-eEEeeeeccc--h---hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHH
Confidence 99999999999 9999999999 4 567778888887 566777765212579999999999999984
No 65
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.91 E-value=5.2e-23 Score=206.27 Aligned_cols=229 Identities=20% Similarity=0.390 Sum_probs=161.5
Q ss_pred HHhhcceeeccceeeeecC------------------cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCcccccc
Q 016750 11 ERIKGKTVEVGRAHFETET------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 72 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~------------------~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~ 72 (383)
+...|+|.+++...+.++. ..++|||||||++|...+..+++.+|+++||+|+++|..
T Consensus 32 ~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~---- 107 (590)
T TIGR00491 32 REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFK---- 107 (590)
T ss_pred ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCC----
Confidence 3346688877766554421 238999999999999999999999999999999998863
Q ss_pred ccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccH------------------HHHHHHHHHHHHHHHhcCCCC----
Q 016750 73 EKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---- 130 (383)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~---- 130 (383)
.|+.+++..++..++| +|+++||+|+.. .|.. ..+++....+...+...|+..
T Consensus 108 ---~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~-~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~ 182 (590)
T TIGR00491 108 ---PQTQEALNILRMYKTP-FVVAANKIDRIP-GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFD 182 (590)
T ss_pred ---HhHHHHHHHHHHcCCC-EEEEEECCCccc-hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhh
Confidence 7899999999999998 899999999942 2211 001111111222344445432
Q ss_pred -----CCCceEEEccccccccccccccCCCCCCCCcccHHHHhhc-cC-CCCCCCCCCeeEEEEEEE--ccCCeEEEEEE
Q 016750 131 -----KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKV 201 (383)
Q Consensus 131 -----~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~-~~-~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V 201 (383)
..+++++|+||++|+|++++.+. |...... ++ ......++|++++|.+++ +|.|++++|.|
T Consensus 183 ~i~~~~~~v~iVpVSA~tGeGideLl~~----------l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v 252 (590)
T TIGR00491 183 RVTDFTKTVAIIPISAITGEGIPELLTM----------LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVI 252 (590)
T ss_pred hhhhcCCCceEEEeecCCCCChhHHHHH----------HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEE
Confidence 23579999999999999996431 2111111 11 112345789999999998 57999999999
Q ss_pred EEeEEecCCEEEEecCCc--EEEEEEEEECC------------ccceecCCCCeEEEEEecCCccCceeeEEE
Q 016750 202 ESGSVREGDSLLVMPNKA--QVKVLAIYCDD------------NRVRHAGPGENLRIRLSGIEEEDILSGFVL 260 (383)
Q Consensus 202 ~sG~l~~gd~v~i~p~~~--~~~V~sI~~~~------------~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl 260 (383)
.+|+|++||.+.++|.+. ..+|++|...+ ..+.++.|..-+-+...|++. ...|+.+
T Consensus 253 ~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~ 323 (590)
T TIGR00491 253 YDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPI 323 (590)
T ss_pred EcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEE
Confidence 999999999999999874 67999998653 356666666655555555543 3455544
No 66
>PTZ00416 elongation factor 2; Provisional
Probab=99.91 E-value=3.9e-23 Score=216.49 Aligned_cols=115 Identities=18% Similarity=0.280 Sum_probs=99.2
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec----------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccc
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 71 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~----------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~ 71 (383)
++++|++++|++||+|++.+...+.|. ++.++|+|||||.+|..++..+++.+|+||+|||+..|+.
T Consensus 54 ~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~--- 130 (836)
T PTZ00416 54 ARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC--- 130 (836)
T ss_pred eeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC---
Confidence 367999999999999999988887775 6789999999999999999999999999999999999984
Q ss_pred cccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc------HHHHHHHHHHHHHHHH
Q 016750 72 FEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS------KERYDEIESKMTPFLK 124 (383)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~------~~~~~~~~~~~~~~~~ 124 (383)
.|++.++..+...++| +|+++||||+...++. ..++..+.++++..+.
T Consensus 131 ----~~t~~~~~~~~~~~~p-~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 131 ----VQTETVLRQALQERIR-PVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred ----ccHHHHHHHHHHcCCC-EEEEEEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998 7899999999522211 3567788888887665
No 67
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.90 E-value=6.5e-23 Score=162.36 Aligned_cols=107 Identities=59% Similarity=0.870 Sum_probs=98.3
Q ss_pred cccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEee
Q 016750 269 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 348 (383)
Q Consensus 269 ~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~ 348 (383)
.+.+|+|++.||+. .+++|.+||++.+|+++.+++|+|.+|.+++|+++|+..+++|++|++|+.+.|+|++++|+|+|
T Consensus 2 ~~~~F~A~i~vl~~-~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e 80 (108)
T cd03704 2 VVTEFEAQIAILEL-KRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLE 80 (108)
T ss_pred cccEEEEEEEEEeC-CCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEE
Confidence 36789999999553 12678899999999999999999999999999998887778899999999999999999999999
Q ss_pred eccCccccceEEEEeCCcEEEEEEEEEc
Q 016750 349 KFADFAQLGRFTLRTEGKTVAVGKVTEL 376 (383)
Q Consensus 349 ~~~~~~~lgr~ilr~~~~tvg~G~V~~~ 376 (383)
+|+++|.||||+||++|+|+|+|.|+++
T Consensus 81 ~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 81 KFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 9999999999999999999999999864
No 68
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.89 E-value=1.9e-22 Score=159.64 Aligned_cols=105 Identities=30% Similarity=0.436 Sum_probs=98.4
Q ss_pred cccEEEEEEEEecccc-cccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEe
Q 016750 269 AVTEFIAQLQILELLD-NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICT 347 (383)
Q Consensus 269 ~~~~f~a~i~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~ 347 (383)
.+++|+|++.| +. ..++..||++.+|+++..++|+|.+|.+++|.+|++..+++|++|++||.+.|+|.+++|+|+
T Consensus 2 ~~~~f~A~v~~---l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~ 78 (107)
T cd04093 2 SSTRFEARILT---FNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPL 78 (107)
T ss_pred cccEEEEEEEE---ECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEE
Confidence 46889999999 55 378999999999999999999999999999999988777789999999999999999999999
Q ss_pred eeccCccccceEEEEeCCcEEEEEEEEEc
Q 016750 348 EKFADFAQLGRFTLRTEGKTVAVGKVTEL 376 (383)
Q Consensus 348 ~~~~~~~~lgr~ilr~~~~tvg~G~V~~~ 376 (383)
|+|.++|.+|||+||++|.|+|+|+|+++
T Consensus 79 e~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 79 ELFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EEcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 99999999999999999999999999875
No 69
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.88 E-value=4.3e-22 Score=156.70 Aligned_cols=102 Identities=33% Similarity=0.624 Sum_probs=96.4
Q ss_pred cccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEe
Q 016750 269 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICT 347 (383)
Q Consensus 269 ~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~ 347 (383)
.+++|+|++.| +++ .++.+||++.+|+++..++|+|.+|.+.+|.++++..+++|++|++|+.+.|+|++++|+|+
T Consensus 2 ~~~~f~A~v~~---l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~ 78 (104)
T cd03705 2 VAESFTAQVIV---LNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVV 78 (104)
T ss_pred cccEEEEEEEE---ECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEE
Confidence 36789999999 666 78999999999999999999999999999999998777789999999999999999999999
Q ss_pred eeccCccccceEEEEeCCcEEEEEEE
Q 016750 348 EKFADFAQLGRFTLRTEGKTVAVGKV 373 (383)
Q Consensus 348 ~~~~~~~~lgr~ilr~~~~tvg~G~V 373 (383)
|+|++++.+|||+|||+|.|+|+|+|
T Consensus 79 e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 79 ETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99999999999999999999999986
No 70
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.86 E-value=2.6e-21 Score=172.25 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=113.2
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec----------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccc
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 71 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~----------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~ 71 (383)
+++||+.++|++||+|++.+...+.+. +++++|||||||.+|...+..+++.+|++++|||+..|..
T Consensus 35 ~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~--- 111 (222)
T cd01885 35 ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC--- 111 (222)
T ss_pred eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC---
Confidence 478999999999999999987776665 7889999999999999999999999999999999999874
Q ss_pred cccCCchHHHHHHHHHcCCCeEEEEEecCCCC------CCCccHHHHHHHHHHHHHHHHhcCCCC-----CCC--c-e--
Q 016750 72 FEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH------TVNWSKERYDEIESKMTPFLKASGYNV-----KKD--V-Q-- 135 (383)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~-~-- 135 (383)
.++++++..+...++| +|+++||+|+. ..++.+.++.++.+++..+++.+.-.. ..+ + |
T Consensus 112 ----~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~ 186 (222)
T cd01885 112 ----VQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQK 186 (222)
T ss_pred ----HHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCC
Confidence 6899999999888998 89999999984 112345677888888888877663110 001 1 2
Q ss_pred --EEEcccccccccc
Q 016750 136 --FLPISGLMGLNMK 148 (383)
Q Consensus 136 --~i~iSa~~g~~i~ 148 (383)
++..|++.|+...
T Consensus 187 gnv~f~S~~~gw~f~ 201 (222)
T cd01885 187 GNVAFGSALHGWGFT 201 (222)
T ss_pred CcEEEEecccCEEec
Confidence 7788999999873
No 71
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.8e-22 Score=185.65 Aligned_cols=250 Identities=22% Similarity=0.298 Sum_probs=174.9
Q ss_pred ceecCCCHHHHhhcceeeccceeee----------------ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFE----------------TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~----------------~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
+.+||+.+.|+|||+||..+..++. .++..+++||.|||-||.+++..+++..|.|++|||+.+
T Consensus 54 ~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~ 133 (842)
T KOG0469|consen 54 TRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133 (842)
T ss_pred ccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccC
Confidence 4689999999999999999877652 246789999999999999999999999999999999999
Q ss_pred CccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCC--CccHHHHHHHHHHHHHHHHhc-------CCCCCCCce-
Q 016750 66 GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV--NWSKERYDEIESKMTPFLKAS-------GYNVKKDVQ- 135 (383)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~- 135 (383)
|++ -||+..+.++-...++ -++++||+|+.-. .++++ ++-+.++...+.. +..+-+++.
T Consensus 134 GvC-------VQTETVLrQA~~ERIk-Pvlv~NK~DRAlLELq~~~E---eLyqtf~R~VE~vNviisTy~d~~~g~~~v 202 (842)
T KOG0469|consen 134 GVC-------VQTETVLRQAIAERIK-PVLVMNKMDRALLELQLSQE---ELYQTFQRIVENVNVIISTYGDGPMGDVQV 202 (842)
T ss_pred ceE-------echHHHHHHHHHhhcc-ceEEeehhhHHHHhhcCCHH---HHHHHHHHHHhcccEEEEecccCCcCceEe
Confidence 997 6999999998888887 4689999997211 12222 2222233322222 221111222
Q ss_pred ------EEEcccccccccccc--------------------------ccCCCCCCCC-----------------------
Q 016750 136 ------FLPISGLMGLNMKTR--------------------------VDKSLCPWWN----------------------- 160 (383)
Q Consensus 136 ------~i~iSa~~g~~i~~~--------------------------~~~~~~~w~~----------------------- 160 (383)
+=..|+++|++..-. ++.+.-+|.+
T Consensus 203 ~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIy 282 (842)
T KOG0469|consen 203 DPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIY 282 (842)
T ss_pred cCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHH
Confidence 334677777765311 0011112221
Q ss_pred ------------------------------------------------cccHHHHhhc-cCCC-----------------
Q 016750 161 ------------------------------------------------GPCLFEALDR-IEIT----------------- 174 (383)
Q Consensus 161 ------------------------------------------------g~~L~~~l~~-~~~~----------------- 174 (383)
+.+|++.|.. +|.|
T Consensus 283 kvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~D 362 (842)
T KOG0469|consen 283 KVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPAD 362 (842)
T ss_pred HHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCc
Confidence 1334443322 3333
Q ss_pred --------CCCCCCCeeEEEEEEE--ccCCeE-EEEEEEEeEEecCCEEEEecCCc------EEEEEEEEE-------CC
Q 016750 175 --------PRDPNGPFRMPIIDKF--KDMGTV-VMGKVESGSVREGDSLLVMPNKA------QVKVLAIYC-------DD 230 (383)
Q Consensus 175 --------~~~~~~p~~~~I~~~~--~~~G~v-v~G~V~sG~l~~gd~v~i~p~~~------~~~V~sI~~-------~~ 230 (383)
.+++++|+.|+|+... .+.|+. +.|||.||.+..|+++++...+. ..-.|+|+. .-
T Consensus 363 De~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~v 442 (842)
T KOG0469|consen 363 DEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFV 442 (842)
T ss_pred hHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccc
Confidence 2567899999999998 478887 77999999999999999986541 223444443 36
Q ss_pred ccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 231 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 231 ~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
++++...+|++++ |-|++..-++.|.+-....
T Consensus 443 epied~PaGNIiG--lvGvDqfLvKtGTiTt~e~ 474 (842)
T KOG0469|consen 443 EPIEDCPAGNIIG--LVGVDQFLVKTGTITTSEA 474 (842)
T ss_pred cccccCCCCcEEE--EeehhHhhhccCceeehhh
Confidence 8999999999999 7888888888888776655
No 72
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.85 E-value=6e-21 Score=170.62 Aligned_cols=144 Identities=25% Similarity=0.402 Sum_probs=118.5
Q ss_pred ecCCCHHHHhhcceeecccee------------------------eeecCcEEEEEeCCCCCChHHHHHHhhh--hcCEE
Q 016750 4 IMDTNEEERIKGKTVEVGRAH------------------------FETETTRFTILDAPGHKSYVPNMISGAS--QADIG 57 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~------------------------~~~~~~~i~liDtPG~~~~~~~~~~~~~--~ad~~ 57 (383)
.+|+.++|.+||+|..+.... ++.+++.++|+|||||++|.+.+.+++. .+|++
T Consensus 34 ~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~ 113 (224)
T cd04165 34 NLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYA 113 (224)
T ss_pred ehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEE
Confidence 468899999999998654422 2345788999999999999999999986 79999
Q ss_pred EEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCC--------
Q 016750 58 VLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN-------- 129 (383)
Q Consensus 58 ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 129 (383)
++|||+..+.. .++++++.++...++| +++++||+|+ . +++++.+..+++...++..|+.
T Consensus 114 llVvda~~g~~-------~~d~~~l~~l~~~~ip-~ivvvNK~D~--~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~ 181 (224)
T cd04165 114 MLVVAANAGII-------GMTKEHLGLALALNIP-VFVVVTKIDL--A--PANILQETLKDLKRILKVPGVRKLPVPVKS 181 (224)
T ss_pred EEEEECCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECccc--c--CHHHHHHHHHHHHHHhcCCCccccceeeec
Confidence 99999999874 7999999999999999 8899999998 4 3567788888888888754432
Q ss_pred ------------CCCCceEEEccccccccccccccCCCCCCCCcccHHHHhhccCC
Q 016750 130 ------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 173 (383)
Q Consensus 130 ------------~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~~~~ 173 (383)
....++++++|+.+|+|+++ |.++|..+|+
T Consensus 182 ~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~--------------L~~~L~~lp~ 223 (224)
T cd04165 182 DDDVVLAASNFSSERIVPIFQVSNVTGEGLDL--------------LHAFLNLLPL 223 (224)
T ss_pred ccceeehhhcCCccccCcEEEeeCCCccCHHH--------------HHHHHHhcCC
Confidence 12245899999999999998 7778888875
No 73
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.84 E-value=1.7e-20 Score=147.19 Aligned_cols=100 Identities=16% Similarity=0.264 Sum_probs=92.1
Q ss_pred cccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEee
Q 016750 269 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 348 (383)
Q Consensus 269 ~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~ 348 (383)
.+.+|.|++.| ++..++.+|+.+.+|+++..++|+|.+|.+++|.+|++. .+|++|+.|+.|.|+|++++|+|+|
T Consensus 2 ~~~~f~a~i~~---l~~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d 76 (103)
T cd04095 2 VSDQFAATLVW---MDEEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFD 76 (103)
T ss_pred ccceeeEEEEE---ecCcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEec
Confidence 36789999999 555679999999999999999999999999999999873 4799999999999999999999999
Q ss_pred eccCccccceEEEEeC--CcEEEEEEE
Q 016750 349 KFADFAQLGRFTLRTE--GKTVAVGKV 373 (383)
Q Consensus 349 ~~~~~~~lgr~ilr~~--~~tvg~G~V 373 (383)
+|.++|.+|||+|+|. |.|+|+|+|
T Consensus 77 ~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 77 PYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred chhhCCCcceEEEEECCCCcEEEEEeC
Confidence 9999999999999655 999999986
No 74
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.84 E-value=1e-20 Score=173.65 Aligned_cols=139 Identities=24% Similarity=0.252 Sum_probs=115.4
Q ss_pred ceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
++++|+.++|++||+|++.....++|++++++|||||||.+|...+.++++.+|++|+|||+..|+. .++.++
T Consensus 36 ~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~-------~~t~~~ 108 (270)
T cd01886 36 GATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVE-------PQTETV 108 (270)
T ss_pred ccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCC-------HHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999873 789999
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccc-ccccccccCCCCCC
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRVDKSLCPW 158 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g-~~i~~~~~~~~~~w 158 (383)
+..+...++| +++++||+|+..++ ++...++++..++...+ ..++|+|+..+ .|+.++...+...|
T Consensus 109 ~~~~~~~~~p-~ivviNK~D~~~a~-----~~~~~~~l~~~l~~~~~-----~~~~Pisa~~~f~g~vd~~~~~a~~~ 175 (270)
T cd01886 109 WRQADRYNVP-RIAFVNKMDRTGAD-----FFRVVEQIREKLGANPV-----PLQLPIGEEDDFRGVVDLIEMKALYW 175 (270)
T ss_pred HHHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHhCCCce-----EEEeccccCCCceEEEEccccEEEec
Confidence 9999999999 67899999994432 44566667766654433 36799999865 36666665444444
No 75
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=9.1e-20 Score=159.91 Aligned_cols=137 Identities=26% Similarity=0.433 Sum_probs=105.7
Q ss_pred eecCCCHHHHhhcceeeccceeeeec--------------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCcc
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETE--------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF 68 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~--------------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~ 68 (383)
+.+|..++|++||+|++..+..+.+. +..++|||||||.+|...+..++..+|++++|+|+..+..
T Consensus 27 ~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~ 106 (192)
T cd01889 27 AAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQ 106 (192)
T ss_pred hhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc
Confidence 45789999999999999999888776 7899999999999999999999999999999999998763
Q ss_pred ccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccc
Q 016750 69 ETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 148 (383)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~ 148 (383)
.++.+++..+...++| +++++||+|+......+...+++.+++...+...++. .++++++||++|.|++
T Consensus 107 -------~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~ 175 (192)
T cd01889 107 -------TQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEA 175 (192)
T ss_pred -------HHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcC---CCCEEEEeccCCCCHH
Confidence 4666777777777887 8899999999321111122333344444344433433 4689999999999999
Q ss_pred cc
Q 016750 149 TR 150 (383)
Q Consensus 149 ~~ 150 (383)
++
T Consensus 176 ~L 177 (192)
T cd01889 176 EL 177 (192)
T ss_pred HH
Confidence 83
No 76
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=7e-20 Score=161.97 Aligned_cols=133 Identities=26% Similarity=0.378 Sum_probs=107.9
Q ss_pred cCCCHHHHhhcceeeccceeeeec---------------------------C------cEEEEEeCCCCCChHHHHHHhh
Q 016750 5 MDTNEEERIKGKTVEVGRAHFETE---------------------------T------TRFTILDAPGHKSYVPNMISGA 51 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~~---------------------------~------~~i~liDtPG~~~~~~~~~~~~ 51 (383)
+|..++|++||+|+..++..+.+. + ++++|||||||++|...+..++
T Consensus 25 ~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~ 104 (203)
T cd01888 25 TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGA 104 (203)
T ss_pred CCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhh
Confidence 689999999999999998887664 3 7899999999999999999999
Q ss_pred hhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCC
Q 016750 52 SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 131 (383)
Q Consensus 52 ~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (383)
..+|++++|+|+..+.. ..++.+++..+...+++++|+++||+|+ .+ +..+....+++++.++.....
T Consensus 105 ~~~D~~llVvd~~~~~~------~~~t~~~l~~~~~~~~~~iiivvNK~Dl--~~--~~~~~~~~~~i~~~~~~~~~~-- 172 (203)
T cd01888 105 AVMDGALLLIAANEPCP------QPQTSEHLAALEIMGLKHIIIVQNKIDL--VK--EEQALENYEQIKKFVKGTIAE-- 172 (203)
T ss_pred hcCCEEEEEEECCCCCC------CcchHHHHHHHHHcCCCcEEEEEEchhc--cC--HHHHHHHHHHHHHHHhccccC--
Confidence 99999999999997421 2578888888888887668899999999 42 234455556666666543222
Q ss_pred CCceEEEcccccccccccc
Q 016750 132 KDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 132 ~~~~~i~iSa~~g~~i~~~ 150 (383)
.++++++||++|+|++++
T Consensus 173 -~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 173 -NAPIIPISAQLKYNIDVL 190 (203)
T ss_pred -CCcEEEEeCCCCCCHHHH
Confidence 457999999999999984
No 77
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.82 E-value=1.4e-19 Score=140.56 Aligned_cols=98 Identities=42% Similarity=0.711 Sum_probs=86.0
Q ss_pred CcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceE
Q 016750 266 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 345 (383)
Q Consensus 266 ~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi 345 (383)
|++.+++|+|++.+++. ..++..||++.+|+++.+++|++.+|.+.+| +|+.. |++|++||.|.|+|++++|+
T Consensus 1 ~~k~~~~f~A~v~vl~~--~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi 73 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDH--PKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPI 73 (99)
T ss_dssp SSEEEEEEEEEEEESSG--SS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcC--CccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccce
Confidence 56789999999999433 3889999999999999999999999999998 44433 99999999999999999999
Q ss_pred EeeeccCccccceEEEEeCCcEEEEEEEEEc
Q 016750 346 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376 (383)
Q Consensus 346 ~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~ 376 (383)
|+|+|+ ||+|||+|+|+|+|.|+++
T Consensus 74 ~ve~~~------Rf~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 74 CVEPFS------RFILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp EETTTT------EEEEEETTEEEEEEEEEEE
T ss_pred eeecCc------eEEEccCCeEEEEEEEEEe
Confidence 999985 9999999999999999986
No 78
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=6.5e-21 Score=175.55 Aligned_cols=240 Identities=18% Similarity=0.242 Sum_probs=161.3
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
++|.+..|||||+|++.....|.|+++++++||||||-||.-++.+.++.-|.++.|+|++.|+. +||...|+
T Consensus 76 vtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve-------~qtltvwr 148 (753)
T KOG0464|consen 76 VTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVE-------AQTLTVWR 148 (753)
T ss_pred HHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcc-------cceeeeeh
Confidence 67899999999999999999999999999999999999999999999999999999999999983 89999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccc--cccccccCCCCCC---
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL--NMKTRVDKSLCPW--- 158 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~--~i~~~~~~~~~~w--- 158 (383)
++.+.++| -++++||||...+ .|+...+.+.+.++.-.+. -.+|+-...|. |+.+..-+...+|
T Consensus 149 qadk~~ip-~~~finkmdk~~a-----nfe~avdsi~ekl~ak~l~-----l~lpi~eak~fnkg~ldil~ke~l~~ncn 217 (753)
T KOG0464|consen 149 QADKFKIP-AHCFINKMDKLAA-----NFENAVDSIEEKLGAKALK-----LQLPIGEAKGFNKGFLDILHKEKLLGNCN 217 (753)
T ss_pred hccccCCc-hhhhhhhhhhhhh-----hhhhHHHHHHHHhCCceEE-----EEecccccccccchHHHHHHHhhccCCCC
Confidence 99999999 5689999998443 3444444444443211100 01111111111 1111000000111
Q ss_pred ------------------------------------------------------------------------------CC
Q 016750 159 ------------------------------------------------------------------------------WN 160 (383)
Q Consensus 159 ------------------------------------------------------------------------------~~ 160 (383)
..
T Consensus 218 sndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~c 297 (753)
T KOG0464|consen 218 SNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILC 297 (753)
T ss_pred CCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceeh
Confidence 00
Q ss_pred cc--------cHHHHhhc-cCCCCCCC-------CCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEE
Q 016750 161 GP--------CLFEALDR-IEITPRDP-------NGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVK 222 (383)
Q Consensus 161 g~--------~L~~~l~~-~~~~~~~~-------~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~ 222 (383)
|. +|++.... +|.|+... ...+....+.+. +.+|..++.|+++|+|+.+-.++...++....
T Consensus 298 gsaiknkgiqplldavtmylpspeernyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~ 377 (753)
T KOG0464|consen 298 GSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEG 377 (753)
T ss_pred hhhhcccCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccc
Confidence 11 12222222 23332111 001111112222 35899999999999999999999988888777
Q ss_pred EEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCCC
Q 016750 223 VLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 265 (383)
Q Consensus 223 V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~ 265 (383)
+..+... +..++++.||++.- ..|++. .-.||+++....
T Consensus 378 ~~kl~~pfade~~~i~qlsagnial--t~glk~--tatgdtivaska 420 (753)
T KOG0464|consen 378 ILKLFLPFADEHREIEQLSAGNIAL--TAGLKH--TATGDTIVASKA 420 (753)
T ss_pred hHhhhccchhhhhhhhhcccccEEE--Eeccee--eccCCeEEecch
Confidence 7777654 66789999999865 456655 668888877653
No 79
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.80 E-value=7e-19 Score=138.00 Aligned_cols=100 Identities=33% Similarity=0.563 Sum_probs=91.6
Q ss_pred cccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEe
Q 016750 269 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICT 347 (383)
Q Consensus 269 ~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~ 347 (383)
.+++|+|++.+ +.+ .++..|+++.+|+++..++|+|..+.+++|.++ ..+++++.|++|+.+.|+|++++|+|+
T Consensus 2 ~~~~f~a~i~~---l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~ 76 (102)
T cd01513 2 AVDKFVAEIYV---LDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVAL 76 (102)
T ss_pred cccEEEEEEEE---ECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEE
Confidence 46889999988 444 689999999999999999999999999999974 335678999999999999999999999
Q ss_pred eeccCccccceEEEEeCCcEEEEEEE
Q 016750 348 EKFADFAQLGRFTLRTEGKTVAVGKV 373 (383)
Q Consensus 348 ~~~~~~~~lgr~ilr~~~~tvg~G~V 373 (383)
|+|.++|.+|||+||+.++|+|+|+|
T Consensus 77 e~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 77 ETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EEhhhCCCcccEEEEeCCCEEEEEEC
Confidence 99999999999999999999999986
No 80
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.79 E-value=1e-18 Score=133.55 Aligned_cols=87 Identities=28% Similarity=0.512 Sum_probs=82.5
Q ss_pred CCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeEEEEEecCCccCcee
Q 016750 179 NGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 256 (383)
Q Consensus 179 ~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~ 256 (383)
++||||+|+++|+ +.|++++|+|++|+|++||+++++|.+..++|+||+++++++++|.|||+|+|+|++++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 5799999999994 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCC
Q 016750 257 GFVLSSVAK 265 (383)
Q Consensus 257 G~vl~~~~~ 265 (383)
|++|++++.
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999998753
No 81
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.78 E-value=3e-18 Score=150.53 Aligned_cols=135 Identities=26% Similarity=0.331 Sum_probs=109.9
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+++|++++|+.+|+|++.....+.+++..++|||||||++|...+..+++.+|++++|+|+.++.+ .++..++
T Consensus 38 ~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-------~~~~~~~ 110 (194)
T cd01891 38 RVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVL 110 (194)
T ss_pred cccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-------HHHHHHH
Confidence 568889999999999999999999999999999999999999999999999999999999998753 4677777
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCC-CCceEEEcccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK-KDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iSa~~g~~i~~~ 150 (383)
..+...++| +++++||+|+.. .++....+++..++..++.... .+++++++||++|.|+.++
T Consensus 111 ~~~~~~~~p-~iiv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 111 KKALELGLK-PIVVINKIDRPD-----ARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHcCCC-EEEEEECCCCCC-----CCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 777778898 889999999932 2234455666666655443211 1468999999999999875
No 82
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.1e-17 Score=164.70 Aligned_cols=92 Identities=24% Similarity=0.396 Sum_probs=87.4
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
.+||+.++|+.||||...+..++..+++.++|||+|||-||.+++-++.+.+|.|+++||+.+|++ .||...+
T Consensus 45 rfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~-------~qt~~vl 117 (887)
T KOG0467|consen 45 RFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVC-------SQTYAVL 117 (887)
T ss_pred eeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccc-------hhHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999996 7999999
Q ss_pred HHHHHcCCCeEEEEEecCCC
Q 016750 83 MLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~ 102 (383)
+++-..+.+ +|+|+||||+
T Consensus 118 rq~~~~~~~-~~lvinkidr 136 (887)
T KOG0467|consen 118 RQAWIEGLK-PILVINKIDR 136 (887)
T ss_pred HHHHHccCc-eEEEEehhhh
Confidence 988888887 8899999994
No 83
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=3.5e-18 Score=154.21 Aligned_cols=96 Identities=33% Similarity=0.437 Sum_probs=88.5
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+++|+.++|++||+|++.....+++++.+++|||||||.+|...+..+++.+|++++|+|+..+.. .++++++
T Consensus 37 ~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~-------~~~~~~~ 109 (237)
T cd04168 37 TRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQ-------AQTRILW 109 (237)
T ss_pred ccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCC-------HHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999999863 6888999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCC
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~ 106 (383)
..+...++| +++++||+|+..++
T Consensus 110 ~~~~~~~~P-~iivvNK~D~~~a~ 132 (237)
T cd04168 110 RLLRKLNIP-TIIFVNKIDRAGAD 132 (237)
T ss_pred HHHHHcCCC-EEEEEECccccCCC
Confidence 999999999 77899999996544
No 84
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.77 E-value=3.5e-18 Score=128.01 Aligned_cols=82 Identities=71% Similarity=1.149 Sum_probs=79.2
Q ss_pred CeeEEEEEEEccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEEE
Q 016750 181 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 260 (383)
Q Consensus 181 p~~~~I~~~~~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl 260 (383)
||+|+|+++|+..|++++|+|++|++++||++.++|.+..++|++|++++.++++|.|||+++++|++++..++++|++|
T Consensus 1 plr~~I~~v~~~~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 1 PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred CeEEEEEeEEEcCCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 78999999998789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 016750 261 SS 262 (383)
Q Consensus 261 ~~ 262 (383)
++
T Consensus 81 ~~ 82 (82)
T cd04089 81 CS 82 (82)
T ss_pred eC
Confidence 74
No 85
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.76 E-value=1.4e-17 Score=141.54 Aligned_cols=131 Identities=30% Similarity=0.546 Sum_probs=104.3
Q ss_pred CCCHHHHhhcceeeccceeeeec-CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFETE-TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~-~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
+..++|..+|+|++..+..+.+. +..+++|||||+++|...+..+++.+|++++|+|++++.. .++.+.+..
T Consensus 26 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-------~~~~~~~~~ 98 (164)
T cd04171 26 DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-------PQTREHLEI 98 (164)
T ss_pred ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-------HhHHHHHHH
Confidence 56778888999999998888876 8899999999999999888999999999999999988653 567777777
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
++..+.+++++++||+|+ .+ +.......+++.+.++..++. ..+++++||++|.|++++
T Consensus 99 ~~~~~~~~~ilv~NK~Dl--~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 99 LELLGIKRGLVVLTKADL--VD--EDWLELVEEEIRELLAGTFLA---DAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred HHHhCCCcEEEEEECccc--cC--HHHHHHHHHHHHHHHHhcCcC---CCcEEEEeCCCCcCHHHH
Confidence 777777348999999999 32 223444555666666654322 458999999999999984
No 86
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.75 E-value=1e-17 Score=125.87 Aligned_cols=82 Identities=62% Similarity=0.963 Sum_probs=78.0
Q ss_pred CeeEEEEEEEcc-CCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEE
Q 016750 181 PFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 259 (383)
Q Consensus 181 p~~~~I~~~~~~-~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~v 259 (383)
||+|+|+++|+. .|++++|+|++|++++||++.++|++..++|++|++++.++++|.|||+|+++|++++..++++|++
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 689999999942 8999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred Eec
Q 016750 260 LSS 262 (383)
Q Consensus 260 l~~ 262 (383)
|++
T Consensus 81 l~~ 83 (83)
T cd03698 81 LCS 83 (83)
T ss_pred EeC
Confidence 974
No 87
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=4.1e-17 Score=145.42 Aligned_cols=136 Identities=20% Similarity=0.296 Sum_probs=105.7
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec-----CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCC
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGG 76 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~-----~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~ 76 (383)
++.+|+.++|++||+|++.....+.+. ...++|||||||.+|...+..++..+|++++|+|+..+.. .
T Consensus 38 ~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~-------~ 110 (213)
T cd04167 38 LRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT-------S 110 (213)
T ss_pred eeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC-------H
Confidence 578999999999999999988887654 4789999999999999999999999999999999998753 4
Q ss_pred chHHHHHHHHHcCCCeEEEEEecCCCCCC------CccHHHHHHHHHHHHHHHHhcCCCCCCCceEE-------Eccccc
Q 016750 77 QTREHVMLAKTLGVTKLLLVVNKMDDHTV------NWSKERYDEIESKMTPFLKASGYNVKKDVQFL-------PISGLM 143 (383)
Q Consensus 77 ~~~~~~~~~~~~~i~~~ivviNK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~iSa~~ 143 (383)
++.+++..+...++| +++++||+|+... ....+++.++.+++...++.+++.+ .+.++ ..|++.
T Consensus 111 ~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~~~nv~~~s~~~ 187 (213)
T cd04167 111 NTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTL--SFLFSPENGNVCFASSKF 187 (213)
T ss_pred HHHHHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCC--ceEeccCCCeEEEEecCC
Confidence 566777777777887 8899999998310 1223567788888888888877642 23344 455555
Q ss_pred cccc
Q 016750 144 GLNM 147 (383)
Q Consensus 144 g~~i 147 (383)
++++
T Consensus 188 ~w~~ 191 (213)
T cd04167 188 GFCF 191 (213)
T ss_pred CeEE
Confidence 5544
No 88
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.74 E-value=4.8e-17 Score=140.70 Aligned_cols=129 Identities=19% Similarity=0.338 Sum_probs=98.9
Q ss_pred eecCCCHHHHhhcceeeccceeeee-----cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCc
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFET-----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQ 77 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~-----~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~ 77 (383)
+++|+.+.|+++|+|.+.....+.+ .+..++|||||||++|...+..+++.+|++|+|+|++.+.. .+
T Consensus 35 ~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-------~~ 107 (179)
T cd01890 35 QVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-------AQ 107 (179)
T ss_pred EeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-------Hh
Confidence 5678899999999999887666544 46778999999999999999999999999999999988753 46
Q ss_pred hHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 78 TREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 78 ~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+.+++..+...++| +++++||+|+... +.....+++.+. +++. ..+++++||++|.|++++
T Consensus 108 ~~~~~~~~~~~~~~-iiiv~NK~Dl~~~-----~~~~~~~~~~~~---~~~~---~~~~~~~Sa~~g~gi~~l 168 (179)
T cd01890 108 TLANFYLALENNLE-IIPVINKIDLPSA-----DPERVKQQIEDV---LGLD---PSEAILVSAKTGLGVEDL 168 (179)
T ss_pred hHHHHHHHHHcCCC-EEEEEECCCCCcC-----CHHHHHHHHHHH---hCCC---cccEEEeeccCCCCHHHH
Confidence 66677666677888 8899999998421 122233333332 3332 235899999999999984
No 89
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.6e-17 Score=160.14 Aligned_cols=215 Identities=20% Similarity=0.361 Sum_probs=149.0
Q ss_pred HHhhcceeeccceeeeec------------------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCcccccc
Q 016750 11 ERIKGKTVEVGRAHFETE------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 72 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~------------------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~ 72 (383)
.-.-|+|..++..+|..+ ---+.+||||||+.|.+...++.+.||.||||||...|+
T Consensus 503 geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl----- 577 (1064)
T KOG1144|consen 503 GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL----- 577 (1064)
T ss_pred ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccC-----
Confidence 344578888887776332 224789999999999999999999999999999999997
Q ss_pred ccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccH------------------HHHHHHHHHHHHHHHhcCCCC----
Q 016750 73 EKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---- 130 (383)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~---- 130 (383)
.+||.+.+.+++..+.| +||++||+|+. -.|.. ..|....+.+...+...|++.
T Consensus 578 --epqtiESi~lLR~rktp-FivALNKiDRL-Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~Lyy 653 (1064)
T KOG1144|consen 578 --EPQTIESINLLRMRKTP-FIVALNKIDRL-YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYY 653 (1064)
T ss_pred --CcchhHHHHHHHhcCCC-eEEeehhhhhh-cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhhee
Confidence 38999999999999999 99999999972 23321 112222222222223333321
Q ss_pred -----CCCceEEEccccccccccccccCCCCCCCCcccHHHHhhccCCCCCCCCCCeeEEEEEE--EccCCeEEEEEEEE
Q 016750 131 -----KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK--FKDMGTVVMGKVES 203 (383)
Q Consensus 131 -----~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~--~~~~G~vv~G~V~s 203 (383)
..-+.++|+||.+|+|+.+|+. | |.+.-.......-..-..+...|.++ +.|.|+.+-.-+..
T Consensus 654 kNk~~~~~vsiVPTSA~sGeGipdLl~-----l-----lv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvN 723 (1064)
T KOG1144|consen 654 KNKEMGETVSIVPTSAISGEGIPDLLL-----L-----LVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVN 723 (1064)
T ss_pred ecccccceEEeeecccccCCCcHHHHH-----H-----HHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEc
Confidence 2235789999999999998542 1 11111111111111123456667665 57999999999999
Q ss_pred eEEecCCEEEEecCC----------------cEEEEEEEEECCcc-------------ceecCCCCeEEE
Q 016750 204 GSVREGDSLLVMPNK----------------AQVKVLAIYCDDNR-------------VRHAGPGENLRI 244 (383)
Q Consensus 204 G~l~~gd~v~i~p~~----------------~~~~V~sI~~~~~~-------------v~~a~aG~~v~l 244 (383)
|.|+.||.|.++..+ +..+|++=++|+.. ++.|.||-++-+
T Consensus 724 G~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~V 793 (1064)
T KOG1144|consen 724 GELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLV 793 (1064)
T ss_pred ceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEE
Confidence 999999999998755 35689988888644 455667776664
No 90
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.71 E-value=6.2e-17 Score=122.52 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=76.6
Q ss_pred eeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC----cEEEEEEEEECCccceecCCCCeEEEEEecCCccCce
Q 016750 182 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 255 (383)
Q Consensus 182 ~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~ 255 (383)
|+|+|+++| ++.|+|++|+|++|++++||++.++|.+ ..++|++|+++++++++|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999 6899999999999999999999999984 6899999999999999999999999999999999999
Q ss_pred eeEEEec
Q 016750 256 SGFVLSS 262 (383)
Q Consensus 256 ~G~vl~~ 262 (383)
+|++|++
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999974
No 91
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=1.1e-16 Score=146.86 Aligned_cols=108 Identities=26% Similarity=0.366 Sum_probs=92.7
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
++|+.++|++||+|+......+++.+++++|||||||.+|...+..+++.+|++|+|+|++.++. .++..++.
T Consensus 45 ~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-------~~~~~i~~ 117 (267)
T cd04169 45 TSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-------PQTRKLFE 117 (267)
T ss_pred cCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-------HHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999998763 57788888
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHH
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK 124 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 124 (383)
.+...++| +++++||+|+..++ +..+.+++++.+.
T Consensus 118 ~~~~~~~P-~iivvNK~D~~~a~-----~~~~~~~l~~~l~ 152 (267)
T cd04169 118 VCRLRGIP-IITFINKLDREGRD-----PLELLDEIEEELG 152 (267)
T ss_pred HHHhcCCC-EEEEEECCccCCCC-----HHHHHHHHHHHHC
Confidence 88888999 88999999995443 3344555555443
No 92
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.69 E-value=9.6e-17 Score=121.60 Aligned_cols=83 Identities=33% Similarity=0.548 Sum_probs=77.4
Q ss_pred eeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecC--CcEEEEEEEEECCccceecCCCCeEEEEEecCCccCceee
Q 016750 182 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257 (383)
Q Consensus 182 ~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G 257 (383)
|+|+|+++| ++.|++++|+|++|++++||++.+.|. +...+|+||+++++++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 689999999 578999999999999999999999986 5788999999999999999999999999999999999999
Q ss_pred EEEecCC
Q 016750 258 FVLSSVA 264 (383)
Q Consensus 258 ~vl~~~~ 264 (383)
++|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999763
No 93
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.6e-15 Score=147.18 Aligned_cols=92 Identities=23% Similarity=0.293 Sum_probs=83.6
Q ss_pred eecCCCHHHHhhcceeeccceeeee-----cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCc
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFET-----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQ 77 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~-----~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~ 77 (383)
..+|.+..|+|||.+|......+-. +.+.++++|||||-+|..++..+++.+|++++|||+.+|++ -+
T Consensus 165 rytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVm-------ln 237 (971)
T KOG0468|consen 165 RYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVM-------LN 237 (971)
T ss_pred cccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCce-------ee
Confidence 4689999999999999998887644 34678999999999999999999999999999999999996 68
Q ss_pred hHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 78 TREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 78 ~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+.+.++.+-....| +.+|+||+|+
T Consensus 238 tEr~ikhaiq~~~~-i~vviNKiDR 261 (971)
T KOG0468|consen 238 TERIIKHAIQNRLP-IVVVINKVDR 261 (971)
T ss_pred HHHHHHHHHhccCc-EEEEEehhHH
Confidence 99999999888888 9999999997
No 94
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.68 E-value=7.2e-16 Score=134.18 Aligned_cols=135 Identities=32% Similarity=0.535 Sum_probs=109.9
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
.+|....|+++|+|++.....+.+.+..++||||||+.++...+..+++.+|++++|+|+..+.. .+..+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~ 108 (189)
T cd00881 36 FLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ-------PQTREHLR 108 (189)
T ss_pred cccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc-------HHHHHHHH
Confidence 56778899999999999998899889999999999999999999999999999999999988653 46677777
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCC--------CCCCceEEEcccccccccccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN--------VKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.+...+.| +++++||+|+ .+ +..+....+++.+.++..+.. .....+++++||++|.|+.++
T Consensus 109 ~~~~~~~~-i~iv~nK~D~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l 178 (189)
T cd00881 109 IAREGGLP-IIVAINKIDR--VG--EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred HHHHCCCC-eEEEEECCCC--cc--hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence 77777887 9999999999 32 234455666677677665430 012468999999999999984
No 95
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.67 E-value=4e-16 Score=117.27 Aligned_cols=81 Identities=40% Similarity=0.636 Sum_probs=76.8
Q ss_pred eeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEE
Q 016750 182 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 259 (383)
Q Consensus 182 ~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~v 259 (383)
|||+|+++| ++.|+++.|+|++|++++||++.+.|++...+|+||+.+++++++|.|||.|++.|++++..++++|++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 689999999 578899999999999999999999999999999999999999999999999999999988889999999
Q ss_pred Eec
Q 016750 260 LSS 262 (383)
Q Consensus 260 l~~ 262 (383)
|+.
T Consensus 81 l~~ 83 (83)
T cd03696 81 LSS 83 (83)
T ss_pred EcC
Confidence 873
No 96
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.66 E-value=1.1e-15 Score=114.00 Aligned_cols=79 Identities=30% Similarity=0.493 Sum_probs=73.4
Q ss_pred eeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEE
Q 016750 182 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 259 (383)
Q Consensus 182 ~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~v 259 (383)
|||+|.++|+ +.|+.++|+|++|.+++||++.++|.+..++|++|+++++++++|.|||+|+++|+ +..++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCCE
Confidence 6899999996 36778999999999999999999999999999999999999999999999999998 4677999999
Q ss_pred Eec
Q 016750 260 LSS 262 (383)
Q Consensus 260 l~~ 262 (383)
|+.
T Consensus 79 l~~ 81 (81)
T cd03695 79 IVA 81 (81)
T ss_pred EeC
Confidence 974
No 97
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.62 E-value=3.8e-15 Score=141.17 Aligned_cols=125 Identities=25% Similarity=0.352 Sum_probs=110.1
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCCh-----------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~-----------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
..|+|+|.....+++++..|.|+||+|.++- ...+..++..+|++++|+||.+|.. .|+.+.
T Consensus 209 ~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-------~qD~~i 281 (444)
T COG1160 209 IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-------EQDLRI 281 (444)
T ss_pred CCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-------HHHHHH
Confidence 4699999999999999999999999997542 4457788999999999999999985 699999
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+.++...|.+ +++++||||+ .+.++..+++.++++...+..++|+ +++++||++|.++.++++
T Consensus 282 a~~i~~~g~~-~vIvvNKWDl--~~~~~~~~~~~k~~i~~~l~~l~~a-----~i~~iSA~~~~~i~~l~~ 344 (444)
T COG1160 282 AGLIEEAGRG-IVIVVNKWDL--VEEDEATMEEFKKKLRRKLPFLDFA-----PIVFISALTGQGLDKLFE 344 (444)
T ss_pred HHHHHHcCCC-eEEEEEcccc--CCchhhHHHHHHHHHHHHhccccCC-----eEEEEEecCCCChHHHHH
Confidence 9999999998 8899999999 5545577888889999999988876 899999999999998754
No 98
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.61 E-value=5.8e-15 Score=136.21 Aligned_cols=129 Identities=22% Similarity=0.287 Sum_probs=102.1
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+++|..++|++||+|+......++++++.++|||||||.+|...+..+++.+|++++|+|++.+.. .++..++
T Consensus 37 ~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-------~~~~~~~ 109 (268)
T cd04170 37 TVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-------VGTEKLW 109 (268)
T ss_pred ccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999998863 5788888
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..+...++| .++++||+|+... .+++..++++..+.. . +-.+.+...+|.|+..+.
T Consensus 110 ~~~~~~~~p-~iivvNK~D~~~~-----~~~~~~~~l~~~~~~---~----~~~~~ip~~~~~~~~~~v 165 (268)
T cd04170 110 EFADEAGIP-RIIFINKMDRERA-----DFDKTLAALQEAFGR---P----VVPLQLPIGEGDDFKGVV 165 (268)
T ss_pred HHHHHcCCC-EEEEEECCccCCC-----CHHHHHHHHHHHhCC---C----eEEEEecccCCCceeEEE
Confidence 889999998 7789999999543 244555556554421 1 112234456666655443
No 99
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.59 E-value=2e-14 Score=110.43 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=76.4
Q ss_pred ccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEE
Q 016750 270 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 346 (383)
Q Consensus 270 ~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~ 346 (383)
+.+|+|++.+++... +.++..||++.+|+++..+.|+|..+ ..+.+|++|+.+.|+|.|++|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~-------------~~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP-------------PGKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC-------------CCCcEeCCCCEEEEEEEECCcEE
Confidence 588999999965322 36899999999999999999998865 12567999999999999999999
Q ss_pred eeeccCccccceEEEEeCCcEEEEEEEEEc
Q 016750 347 TEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376 (383)
Q Consensus 347 ~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~ 376 (383)
++++ |||+||+.++|+|+|+|+++
T Consensus 70 ~~~g------~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 70 LEKG------QRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred EeeC------CEEEEEECCEEEEEEEEEeC
Confidence 9884 89999999999999999874
No 100
>COG1159 Era GTPase [General function prediction only]
Probab=99.56 E-value=1.8e-14 Score=129.67 Aligned_cols=150 Identities=22% Similarity=0.233 Sum_probs=105.7
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCC--------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~--------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
...+|+......++.++.|+.|+||||... +.+.+..++..+|+++||||+..+. +..++..++.
T Consensus 37 k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~-------~~~d~~il~~ 109 (298)
T COG1159 37 KPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGW-------GPGDEFILEQ 109 (298)
T ss_pred CcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccC-------CccHHHHHHH
Confidence 346788888888899999999999999542 3556677888999999999999976 3567777888
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccH
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 164 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L 164 (383)
++..+.| +|+++||+|. ++. +... ...+..+-....|. .++|+||++|.|++.+.+. +
T Consensus 110 lk~~~~p-vil~iNKID~--~~~-~~~l---~~~~~~~~~~~~f~-----~ivpiSA~~g~n~~~L~~~----------i 167 (298)
T COG1159 110 LKKTKTP-VILVVNKIDK--VKP-KTVL---LKLIAFLKKLLPFK-----EIVPISALKGDNVDTLLEI----------I 167 (298)
T ss_pred HhhcCCC-eEEEEEcccc--CCc-HHHH---HHHHHHHHhhCCcc-----eEEEeeccccCCHHHHHHH----------H
Confidence 8886778 8899999998 431 1212 22233333444444 7999999999999985441 2
Q ss_pred HHHhhc---cCCCCCCCCCCeeEEEEEEEc
Q 016750 165 FEALDR---IEITPRDPNGPFRMPIIDKFK 191 (383)
Q Consensus 165 ~~~l~~---~~~~~~~~~~p~~~~I~~~~~ 191 (383)
.+.|.. +.|+..-++.|.+|.+.+..+
T Consensus 168 ~~~Lpeg~~~yp~d~itD~~~rf~~aEiiR 197 (298)
T COG1159 168 KEYLPEGPWYYPEDQITDRPERFLAAEIIR 197 (298)
T ss_pred HHhCCCCCCcCChhhccCChHHHHHHHHHH
Confidence 333322 234444567777777766653
No 101
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.56 E-value=5e-14 Score=107.60 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=74.5
Q ss_pred ccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEE
Q 016750 270 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 346 (383)
Q Consensus 270 ~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~ 346 (383)
+..|+|++.+++... ..+++.||++.+|+++..+.|++..+. ++++|++|+.+.|+|.+++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 588999999965432 268999999999999999999988653 4667999999999999999999
Q ss_pred eeeccCccccceEEEEeCCcEEEEEEE
Q 016750 347 TEKFADFAQLGRFTLRTEGKTVAVGKV 373 (383)
Q Consensus 347 ~~~~~~~~~lgr~ilr~~~~tvg~G~V 373 (383)
++++ |||+||+.++|+|+|+|
T Consensus 70 ~~~~------~rf~lR~~~~tig~G~V 90 (90)
T cd03707 70 LEKG------LRFAIREGGRTVGAGVI 90 (90)
T ss_pred EecC------CEEEEecCCcEEEEEEC
Confidence 8884 89999999999999986
No 102
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.56 E-value=3.6e-14 Score=121.17 Aligned_cols=129 Identities=29% Similarity=0.437 Sum_probs=93.6
Q ss_pred HHHHhhcceeeccceeeeec---CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 9 EEERIKGKTVEVGRAHFETE---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 9 ~~E~~rG~Ti~~~~~~~~~~---~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.+...+++|.+.....+..+ +..++||||||+.+|...+..++..+|++++|+|++.+.. .++.+.+..+
T Consensus 26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~~~~~ 98 (168)
T cd01887 26 AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM-------PQTIEAIKLA 98 (168)
T ss_pred ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-------HHHHHHHHHH
Confidence 34455688888877777764 7899999999999998888888999999999999998753 5777788888
Q ss_pred HHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCC-CCCCCceEEEccccccccccccc
Q 016750 86 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY-NVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 86 ~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
...++| +++++||+|+. +....+. ...+..+... .. .....++++++|+.+|+|+.++.
T Consensus 99 ~~~~~p-~ivv~NK~Dl~--~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 99 KAANVP-FIVALNKIDKP--NANPERV---KNELSELGLQ-GEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred HHcCCC-EEEEEEceecc--cccHHHH---HHHHHHhhcc-ccccccCcCcEEEeecccCCCHHHHH
Confidence 888998 88999999993 2222222 2222222111 00 00124689999999999999843
No 103
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.55 E-value=4.4e-14 Score=134.04 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=94.9
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCC-----h----HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKS-----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~-----~----~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
..|+|+|..+...+|.++.|.+|||+|..+ + ..++..++..||++|||||+..|++ +.+.+...
T Consensus 34 ~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git-------~~D~~ia~ 106 (444)
T COG1160 34 TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT-------PADEEIAK 106 (444)
T ss_pred CCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHH
Confidence 469999999999999999999999999763 2 3456778999999999999999985 78899999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++..++| +|+|+||+|-. + .++ ....+.++|+. +++|+||.+|.|+.++.+
T Consensus 107 ~Lr~~~kp-viLvvNK~D~~--~-----~e~----~~~efyslG~g-----~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 107 ILRRSKKP-VILVVNKIDNL--K-----AEE----LAYEFYSLGFG-----EPVPISAEHGRGIGDLLD 158 (444)
T ss_pred HHHhcCCC-EEEEEEcccCc--h-----hhh----hHHHHHhcCCC-----CceEeehhhccCHHHHHH
Confidence 99987788 99999999972 1 111 12234456775 799999999999999644
No 104
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.54 E-value=5.8e-14 Score=106.56 Aligned_cols=84 Identities=26% Similarity=0.451 Sum_probs=72.9
Q ss_pred cccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEE-CceEE
Q 016750 269 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV-NNSIC 346 (383)
Q Consensus 269 ~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~-~~pi~ 346 (383)
.+++|+|++.| +++ +++.+||++.+|+++..++|+|..+.. +++++||.+.|+|.| .+|+|
T Consensus 2 ~~~~f~A~i~i---l~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~ 64 (87)
T cd03708 2 ACWEFEAEILV---LHHPTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEY 64 (87)
T ss_pred ceeEEEEEEEE---EcCCCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcE
Confidence 47889999999 554 789999999999999999999987642 469999999999995 89998
Q ss_pred eeeccCccccceEEEEeCCcEEEEEEEEEc
Q 016750 347 TEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376 (383)
Q Consensus 347 ~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~ 376 (383)
+++ +|||+||+ |+|+|+|+|+++
T Consensus 65 ~e~------~grf~lr~-g~tva~G~I~~~ 87 (87)
T cd03708 65 LRE------GQRLIFRE-GRTKGVGEVTKV 87 (87)
T ss_pred Ecc------CCeEEEEC-CCcEEEEEEEEC
Confidence 887 59999955 599999999874
No 105
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.50 E-value=1.4e-13 Score=135.65 Aligned_cols=126 Identities=24% Similarity=0.298 Sum_probs=100.0
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCCChH-----------HHHHHhhhhcCEEEEEEECCCCccccccccCCchH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~-----------~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
....|+|++.....+++++..+.+|||||+.++. ..+..+++.+|++|+|+|+..+.+ .++.
T Consensus 201 ~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~-------~~~~ 273 (429)
T TIGR03594 201 SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT-------EQDL 273 (429)
T ss_pred CCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHH
Confidence 3457999999888888899999999999986542 234567889999999999998874 5777
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++..+...++| +|+++||+|+ .+ ++..++++.+.+...+..++ .++++++||++|.|+.++.+
T Consensus 274 ~~~~~~~~~~~~-iiiv~NK~Dl--~~-~~~~~~~~~~~~~~~~~~~~-----~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 274 RIAGLILEAGKA-LVIVVNKWDL--VK-DEKTREEFKKELRRKLPFLD-----FAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred HHHHHHHHcCCc-EEEEEECccc--CC-CHHHHHHHHHHHHHhcccCC-----CCceEEEeCCCCCCHHHHHH
Confidence 788888888888 8999999999 42 34556677777766665544 35899999999999998754
No 106
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.47 E-value=3.4e-13 Score=124.50 Aligned_cols=119 Identities=17% Similarity=0.215 Sum_probs=83.2
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCCh--------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~--------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..++|.+.....+..++.++.|+||||+.+. .+.+..++..+|++++|+|++.+.. ....++..
T Consensus 31 ~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~~~i~~~ 102 (270)
T TIGR00436 31 KAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DGEFVLTK 102 (270)
T ss_pred CCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hHHHHHHH
Confidence 3467777655556667789999999997542 3345567889999999999987542 22455667
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+...+.| +++|+||+|+ .+ +.. ..+.+..+....++. +++|+||++|.|++++.+
T Consensus 103 l~~~~~p-~ilV~NK~Dl--~~--~~~---~~~~~~~~~~~~~~~-----~v~~iSA~~g~gi~~L~~ 157 (270)
T TIGR00436 103 LQNLKRP-VVLTRNKLDN--KF--KDK---LLPLIDKYAILEDFK-----DIVPISALTGDNTSFLAA 157 (270)
T ss_pred HHhcCCC-EEEEEECeeC--CC--HHH---HHHHHHHHHhhcCCC-----ceEEEecCCCCCHHHHHH
Confidence 7778888 8899999999 42 222 223333333333332 799999999999999644
No 107
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=6e-13 Score=131.44 Aligned_cols=125 Identities=26% Similarity=0.353 Sum_probs=99.6
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCCCh-----------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~-----------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
...+|+|++.....+.+++..+.++||||+.+. ...+.++++.+|++|+|+|+..+.. .++.
T Consensus 202 ~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~-------~~~~ 274 (435)
T PRK00093 202 SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT-------EQDL 274 (435)
T ss_pred cCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHH
Confidence 346799999988888899999999999997542 2345668889999999999998864 5788
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++..+...+.| +++++||+|+ .+ +...+++.+++...+.... ..+++++||++|.|+.++.+
T Consensus 275 ~i~~~~~~~~~~-~ivv~NK~Dl--~~--~~~~~~~~~~~~~~l~~~~-----~~~i~~~SA~~~~gv~~l~~ 337 (435)
T PRK00093 275 RIAGLALEAGRA-LVIVVNKWDL--VD--EKTMEEFKKELRRRLPFLD-----YAPIVFISALTGQGVDKLLE 337 (435)
T ss_pred HHHHHHHHcCCc-EEEEEECccC--CC--HHHHHHHHHHHHHhccccc-----CCCEEEEeCCCCCCHHHHHH
Confidence 888888888988 8899999999 42 3445666666666665444 35899999999999998764
No 108
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.44 E-value=1.6e-13 Score=114.65 Aligned_cols=114 Identities=23% Similarity=0.319 Sum_probs=79.3
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCChH------HHHHHhh--hhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYV------PNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~------~~~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.|+|++.....+.+.+..+.|+|+||..++. +-+..++ ..+|++++|+||+.- .+....+.++
T Consensus 31 pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---------~r~l~l~~ql 101 (156)
T PF02421_consen 31 PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---------ERNLYLTLQL 101 (156)
T ss_dssp TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---------HHHHHHHHHH
T ss_pred CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---------HHHHHHHHHH
Confidence 5999999999999999999999999965441 1122233 479999999999873 3566777888
Q ss_pred HHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 86 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 86 ~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.++|+| +++++||+|+ +. ...+.-....+.+.+| ++++|+||.+|+|++++
T Consensus 102 ~e~g~P-~vvvlN~~D~--a~-----~~g~~id~~~Ls~~Lg------~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 102 LELGIP-VVVVLNKMDE--AE-----RKGIEIDAEKLSERLG------VPVIPVSARTGEGIDEL 152 (156)
T ss_dssp HHTTSS-EEEEEETHHH--HH-----HTTEEE-HHHHHHHHT------S-EEEEBTTTTBTHHHH
T ss_pred HHcCCC-EEEEEeCHHH--HH-----HcCCEECHHHHHHHhC------CCEEEEEeCCCcCHHHH
Confidence 899999 9999999998 32 1111111222233333 48999999999999984
No 109
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.44 E-value=3e-13 Score=115.40 Aligned_cols=123 Identities=22% Similarity=0.248 Sum_probs=84.1
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcC
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLG 89 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~ 89 (383)
...|+......+.+++..+.+|||||+.+|...+...++.+|++++|+|+..... + ......+..+. ..+
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~---~---~~~~~~~~~~~~~~~~~~ 107 (167)
T cd04160 34 ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRER---F---EESKSALEKVLRNEALEG 107 (167)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHH---H---HHHHHHHHHHHhChhhcC
Confidence 3556666677788889999999999999998888888999999999999986421 1 12222322222 246
Q ss_pred CCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 90 VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 90 i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+| +++++||+|++.. ...+++.+.+.......+.. .++++++||++|+|++++
T Consensus 108 ~p-~ilv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 108 VP-LLILANKQDLPDA----LSVEEIKEVFQDKAEEIGRR---DCLVLPVSALEGTGVREG 160 (167)
T ss_pred CC-EEEEEEccccccC----CCHHHHHHHhccccccccCC---ceEEEEeeCCCCcCHHHH
Confidence 78 8999999998432 11223333333332222322 468999999999999884
No 110
>PRK15494 era GTPase Era; Provisional
Probab=99.43 E-value=2e-13 Score=129.74 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=97.3
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCCh--------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~--------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..++|++.....+++++.++.||||||+.+. .+....++..+|++|+|+|+..+.. ..+..++..
T Consensus 83 k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~-------~~~~~il~~ 155 (339)
T PRK15494 83 KVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFD-------DITHNILDK 155 (339)
T ss_pred CCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------HHHHHHHHH
Confidence 4577877777778888999999999997432 2333446789999999999887542 344556677
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccH
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 164 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L 164 (383)
++..+.| .|+|+||+|+ .+ .... ++...+..... ...++|+||++|.|++++.+. |
T Consensus 156 l~~~~~p-~IlViNKiDl--~~---~~~~----~~~~~l~~~~~----~~~i~~iSAktg~gv~eL~~~----------L 211 (339)
T PRK15494 156 LRSLNIV-PIFLLNKIDI--ES---KYLN----DIKAFLTENHP----DSLLFPISALSGKNIDGLLEY----------I 211 (339)
T ss_pred HHhcCCC-EEEEEEhhcC--cc---ccHH----HHHHHHHhcCC----CcEEEEEeccCccCHHHHHHH----------H
Confidence 7777887 5789999998 32 1122 23333333221 247999999999999986441 2
Q ss_pred HHHhhc---cCCCCCCCCCCeeEEEEEEE
Q 016750 165 FEALDR---IEITPRDPNGPFRMPIIDKF 190 (383)
Q Consensus 165 ~~~l~~---~~~~~~~~~~p~~~~I~~~~ 190 (383)
.+.+.. +.++...++.|.++.+.+.+
T Consensus 212 ~~~l~~~~~~~~~~~~td~~~~~~~~eii 240 (339)
T PRK15494 212 TSKAKISPWLYAEDDITDLPMRFIAAEIT 240 (339)
T ss_pred HHhCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 222222 23444556777777777655
No 111
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.43 E-value=2.3e-12 Score=108.40 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=87.0
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCCChHH--------HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~--------~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+...++|.+.......++++.+.+|||||+.++.. .....++.+|++++|+|+..+.. ....+++
T Consensus 26 ~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-------~~~~~~~ 98 (157)
T cd01894 26 EDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT-------PADEEIA 98 (157)
T ss_pred cCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC-------ccHHHHH
Confidence 34557888888888888899999999999988543 44567789999999999987653 3556677
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+++..+.| +++++||+|+ .+... . ...+..+++. +++++|+++|.|++++.
T Consensus 99 ~~~~~~~~p-iiiv~nK~D~--~~~~~-----~----~~~~~~~~~~-----~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 99 KYLRKSKKP-VILVVNKVDN--IKEED-----E----AAEFYSLGFG-----EPIPISAEHGRGIGDLL 150 (157)
T ss_pred HHHHhcCCC-EEEEEECccc--CChHH-----H----HHHHHhcCCC-----CeEEEecccCCCHHHHH
Confidence 778888888 8999999999 32111 1 1223334432 68999999999999853
No 112
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.42 E-value=3.1e-12 Score=109.28 Aligned_cols=125 Identities=25% Similarity=0.285 Sum_probs=89.7
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCCChH-----------HHHHHhhhhcCEEEEEEECCCCccccccccCCchH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~-----------~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
+..+++|.+.....+..++..+++|||||+.+.. ..+..++..+|++++|+|+..+.. .+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~ 103 (174)
T cd01895 31 SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT-------EQDL 103 (174)
T ss_pred cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc-------hhHH
Confidence 3456788888777788888899999999975431 234556779999999999988753 3455
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
..+..+...+.| +++++||+|+ .+......+...+.+...+...+ ..+++++||+++.|+.++
T Consensus 104 ~~~~~~~~~~~~-~iiv~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 166 (174)
T cd01895 104 RIAGLILEEGKA-LVIVVNKWDL--VEKDSKTMKEFKKEIRRKLPFLD-----YAPIVFISALTGQGVDKL 166 (174)
T ss_pred HHHHHHHhcCCC-EEEEEecccc--CCccHHHHHHHHHHHHhhccccc-----CCceEEEeccCCCCHHHH
Confidence 566666667877 8899999999 43222344455555555443322 358999999999999884
No 113
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.41 E-value=1.5e-12 Score=109.75 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=82.6
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHHH------HHHhh--hhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPN------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~------~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
...|+|++.....+++++..+.||||||+.++... +...+ ..+|++++|+|+.... +....+.
T Consensus 25 ~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---------~~~~~~~ 95 (158)
T cd01879 25 NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE---------RNLYLTL 95 (158)
T ss_pred CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch---------hHHHHHH
Confidence 34789999988889998899999999999876532 23334 4899999999998642 3344455
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+...++| +++++||+|+.... .. ......+.+.++ .+++++|+.+|.|+.++.
T Consensus 96 ~~~~~~~~-~iiv~NK~Dl~~~~----~~---~~~~~~~~~~~~------~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 96 QLLELGLP-VVVALNMIDEAEKR----GI---KIDLDKLSELLG------VPVVPTSARKGEGIDELK 149 (158)
T ss_pred HHHHcCCC-EEEEEehhhhcccc----cc---hhhHHHHHHhhC------CCeEEEEccCCCCHHHHH
Confidence 66677888 88999999994321 11 111222333333 379999999999999853
No 114
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.37 E-value=2.6e-12 Score=126.75 Aligned_cols=116 Identities=21% Similarity=0.296 Sum_probs=90.6
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCC--------ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHK--------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~--------~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..|+|.|.....+.+++..+.+|||||+. .+...+..++..+|++++|+|+..+.. ..+.+.+.+
T Consensus 30 ~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~-------~~d~~i~~~ 102 (429)
T TIGR03594 30 TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLT-------PEDEEIAKW 102 (429)
T ss_pred CCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHH
Confidence 46999999999999999999999999973 345566778899999999999998763 566778888
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++..++| +++|+||+|+...+ . .. . .+..+++. +++++||.+|.|+.++.+
T Consensus 103 l~~~~~p-iilVvNK~D~~~~~--~-----~~---~-~~~~lg~~-----~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 103 LRKSGKP-VILVANKIDGKKED--A-----VA---A-EFYSLGFG-----EPIPISAEHGRGIGDLLD 153 (429)
T ss_pred HHHhCCC-EEEEEECccCCccc--c-----cH---H-HHHhcCCC-----CeEEEeCCcCCChHHHHH
Confidence 8888988 89999999983221 1 11 1 13345553 689999999999998543
No 115
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=4.6e-12 Score=126.01 Aligned_cols=125 Identities=21% Similarity=0.259 Sum_probs=92.0
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCCC---------hHHH--HHHhhhhcCEEEEEEECCCCccccccccCCchH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKS---------YVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~---------~~~~--~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
+...|+|+|.....+++++..+.||||||..+ +... ...+++.+|++++|+|++++.. .+..
T Consensus 240 s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s-------~~~~ 312 (472)
T PRK03003 240 DDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS-------EQDQ 312 (472)
T ss_pred cCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------HHHH
Confidence 34579999998888889999999999999632 2222 2346789999999999998864 4666
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..+..+...++| +|+|+||+|+ .+ +.......+++...+.... ..+++++||++|.|++++.+
T Consensus 313 ~~~~~~~~~~~p-iIiV~NK~Dl--~~--~~~~~~~~~~i~~~l~~~~-----~~~~~~~SAk~g~gv~~lf~ 375 (472)
T PRK03003 313 RVLSMVIEAGRA-LVLAFNKWDL--VD--EDRRYYLEREIDRELAQVP-----WAPRVNISAKTGRAVDKLVP 375 (472)
T ss_pred HHHHHHHHcCCC-EEEEEECccc--CC--hhHHHHHHHHHHHhcccCC-----CCCEEEEECCCCCCHHHHHH
Confidence 677777778888 8999999999 32 1223334444544444333 24799999999999999764
No 116
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.36 E-value=1.1e-11 Score=95.20 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=76.4
Q ss_pred CCCCeeEEEEEEEc----------cCCeEEEEEEEEeEEecCCEEEEecC-------C-----cEEEEEEEEECCcccee
Q 016750 178 PNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPN-------K-----AQVKVLAIYCDDNRVRH 235 (383)
Q Consensus 178 ~~~p~~~~I~~~~~----------~~G~vv~G~V~sG~l~~gd~v~i~p~-------~-----~~~~V~sI~~~~~~v~~ 235 (383)
.++|++|+|.++|. .+|.|+.|+|.+|.|++||++.|.|. + ...+|.||+..++.+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 46789999999982 58999999999999999999999986 2 35689999999999999
Q ss_pred cCCCCeEEE---EEecCCccCceeeEEEecC
Q 016750 236 AGPGENLRI---RLSGIEEEDILSGFVLSSV 263 (383)
Q Consensus 236 a~aG~~v~l---~l~g~~~~~i~~G~vl~~~ 263 (383)
|.||+.+++ ...++.+.|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 5558889999999999875
No 117
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=2.4e-12 Score=109.71 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=83.2
Q ss_pred CCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+...++....++.+.....+.+++ ..+.||||||+++|...+...++.+|++++|+|+++... ++ .....+.
T Consensus 26 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~ 99 (165)
T cd01864 26 GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS---FE---SVPHWIE 99 (165)
T ss_pred CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---hHHHHHH
Confidence 334444444444455555565555 478999999999998888888899999999999988642 11 2233344
Q ss_pred HHHH---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 84 LAKT---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 84 ~~~~---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+.. .++| +++|+||+|+... .+ ...++...+.+..+. ..++++||++|.|+.++.
T Consensus 100 ~i~~~~~~~~p-~ivv~nK~Dl~~~--~~----~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~~ 158 (165)
T cd01864 100 EVEKYGASNVV-LLLIGNKCDLEEQ--RE----VLFEEACTLAEKNGM-----LAVLETSAKESQNVEEAF 158 (165)
T ss_pred HHHHhCCCCCc-EEEEEECcccccc--cc----cCHHHHHHHHHHcCC-----cEEEEEECCCCCCHHHHH
Confidence 3333 3566 8899999999321 11 112233334444432 368999999999999853
No 118
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.33 E-value=1.5e-11 Score=106.41 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=81.9
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCC----------hHHHHHHhh---hhcCEEEEEEECCCCccccccccCCchH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKS----------YVPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~----------~~~~~~~~~---~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
..|.|.+..+... + ..+.||||||+.. |...+...+ ..+|++++|+|++.+.. .++.
T Consensus 50 ~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~-------~~~~ 119 (179)
T TIGR03598 50 TPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK-------ELDL 119 (179)
T ss_pred CCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC-------HHHH
Confidence 3466766654333 3 4799999999632 222222333 35689999999988653 4666
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 148 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~ 148 (383)
+++..+...++| +++++||+|+ .+ ....+...+++++.++..+. ..+++++||++|+|++
T Consensus 120 ~~~~~~~~~~~p-viiv~nK~D~--~~--~~~~~~~~~~i~~~l~~~~~----~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 120 EMLEWLRERGIP-VLIVLTKADK--LK--KSELNKQLKKIKKALKKDAD----DPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHcCCC-EEEEEECccc--CC--HHHHHHHHHHHHHHHhhccC----CCceEEEECCCCCCCC
Confidence 677888888888 8899999999 42 34455666777777776542 3479999999999974
No 119
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.31 E-value=1.4e-11 Score=122.49 Aligned_cols=118 Identities=23% Similarity=0.301 Sum_probs=87.8
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCCC--------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~--------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+...|+|.+.....+++++..+.||||||+.. +...+..++..+|++|+|+|++.+.. ....+.+
T Consensus 67 ~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s-------~~~~~i~ 139 (472)
T PRK03003 67 EDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-------ATDEAVA 139 (472)
T ss_pred cCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHH
Confidence 45668999998888899999999999999863 34445667889999999999998763 3455667
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..++..++| +|+|+||+|+.... . + ... +...++. ..+++||++|.|+.++.+
T Consensus 140 ~~l~~~~~p-iilV~NK~Dl~~~~--~----~----~~~-~~~~g~~-----~~~~iSA~~g~gi~eL~~ 192 (472)
T PRK03003 140 RVLRRSGKP-VILAANKVDDERGE--A----D----AAA-LWSLGLG-----EPHPVSALHGRGVGDLLD 192 (472)
T ss_pred HHHHHcCCC-EEEEEECccCCccc--h----h----hHH-HHhcCCC-----CeEEEEcCCCCCcHHHHH
Confidence 777778888 99999999983211 1 1 111 1233443 357999999999999643
No 120
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=4.9e-12 Score=106.21 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=87.9
Q ss_pred eecCCCHHHHhhcceeecccee----eeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch
Q 016750 3 YIMDTNEEERIKGKTVEVGRAH----FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT 78 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~----~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~ 78 (383)
|+.|.+.+-++ -||...+.. +.....++.+|||+|+++|.+..-.+++.|++||+|.|.++..+ |. +.
T Consensus 25 fvk~~F~e~~e--~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~S---F~---~a 96 (200)
T KOG0092|consen 25 FVKDQFHENIE--PTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEES---FE---KA 96 (200)
T ss_pred hhhCccccccc--cccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHH---HH---HH
Confidence 44566666333 233333333 22234778899999999999988899999999999999997542 32 55
Q ss_pred HHHHHHHHHcCCCeEEE--EEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 79 REHVMLAKTLGVTKLLL--VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 79 ~~~~~~~~~~~i~~~iv--viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+.+++.+....-|.+++ |.||+|+ .+ +.+-..++...+....| ..++.+||++|.|+.++
T Consensus 97 K~WvkeL~~~~~~~~vialvGNK~DL--~~----~R~V~~~ea~~yAe~~g------ll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 97 KNWVKELQRQASPNIVIALVGNKADL--LE----RREVEFEEAQAYAESQG------LLFFETSAKTGENVNEI 158 (200)
T ss_pred HHHHHHHHhhCCCCeEEEEecchhhh--hh----cccccHHHHHHHHHhcC------CEEEEEecccccCHHHH
Confidence 66667776665455544 7899999 32 12223344555666554 47999999999999985
No 121
>PRK00089 era GTPase Era; Reviewed
Probab=99.31 E-value=1.9e-11 Score=114.35 Aligned_cols=119 Identities=21% Similarity=0.245 Sum_probs=80.5
Q ss_pred cceeeccceeeeecCcEEEEEeCCCCCCh--------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH
Q 016750 15 GKTVEVGRAHFETETTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK 86 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~~~i~liDtPG~~~~--------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~ 86 (383)
++|.+.....+..++.++.|+||||+.+. ...+..++..+|++++|+|++.+.. ....+++..+.
T Consensus 38 ~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~-------~~~~~i~~~l~ 110 (292)
T PRK00089 38 QTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG-------PGDEFILEKLK 110 (292)
T ss_pred CcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------hhHHHHHHHHh
Confidence 34544444444556689999999997543 3345567789999999999988542 34556667777
Q ss_pred HcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 87 TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 87 ~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..+.| +++++||+|+ .. +........+ .+.+..++ .+++++||++|.|+.++.+
T Consensus 111 ~~~~p-vilVlNKiDl--~~-~~~~l~~~~~---~l~~~~~~-----~~i~~iSA~~~~gv~~L~~ 164 (292)
T PRK00089 111 KVKTP-VILVLNKIDL--VK-DKEELLPLLE---ELSELMDF-----AEIVPISALKGDNVDELLD 164 (292)
T ss_pred hcCCC-EEEEEECCcC--CC-CHHHHHHHHH---HHHhhCCC-----CeEEEecCCCCCCHHHHHH
Confidence 66788 8899999999 42 1222333333 33333332 3799999999999998643
No 122
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.29 E-value=6.4e-12 Score=110.75 Aligned_cols=131 Identities=21% Similarity=0.169 Sum_probs=85.4
Q ss_pred ecCCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
..+.+.++....++.+.....++.++ ..+.||||||+++|...+...++.+|++|+|+|.++..+ |+ ....+
T Consensus 21 ~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S---f~---~l~~w 94 (202)
T cd04120 21 TDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKW 94 (202)
T ss_pred HhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHH
Confidence 34555555454445555445566655 667899999999999888889999999999999998542 22 22333
Q ss_pred HHHHHH---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 82 VMLAKT---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 82 ~~~~~~---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+..++. .++| +++|.||+|+... .+ -..++...+.+... ...++.+||++|.|+++++.
T Consensus 95 ~~~i~~~~~~~~p-iilVgNK~DL~~~--~~----v~~~~~~~~a~~~~-----~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 95 MKMIDKYASEDAE-LLLVGNKLDCETD--RE----ISRQQGEKFAQQIT-----GMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred HHHHHHhCCCCCc-EEEEEECcccccc--cc----cCHHHHHHHHHhcC-----CCEEEEecCCCCCCHHHHHH
Confidence 344433 2466 8999999998321 10 01122223333321 24799999999999999753
No 123
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.29 E-value=4.6e-11 Score=92.39 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=78.2
Q ss_pred eEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEE
Q 016750 257 GFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 336 (383)
Q Consensus 257 G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~ 336 (383)
|++++.++.. .+++.+++++.++... ..+++.++.+.+|+|+..+.|+|.-+ +. +.+.+|+...
T Consensus 1 G~vl~~~~~~-~~~~~~~~~i~~l~~~-~~~l~~~~~v~~~~Gt~~v~~ri~ll----~~----------~~~~pg~~~~ 64 (97)
T cd04094 1 GDVLADPGSL-LPTRRLDVRLTVLLSA-PRPLKHRQRVHLHHGTSEVLARVVLL----DR----------DELAPGEEAL 64 (97)
T ss_pred CCEEecCCCc-CCceEEEEEEEEECCC-CccCCCCCeEEEEeccceEEEEEEeC----Cc----------cccCCCCEEE
Confidence 7888887633 4479999999985432 25799999999999999999998743 21 2388999999
Q ss_pred EEEEECceEEeeeccCccccceEEEEeCC--cEEEEEEE
Q 016750 337 CRIQVNNSICTEKFADFAQLGRFTLRTEG--KTVAVGKV 373 (383)
Q Consensus 337 v~~~~~~pi~~~~~~~~~~lgr~ilr~~~--~tvg~G~V 373 (383)
++++|++|+++... .||+||+.+ +|+|+|+|
T Consensus 65 a~l~l~~pl~~~~g------drfilR~~~~~~tiggG~V 97 (97)
T cd04094 65 AQLRLEEPLVALRG------DRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEECCcEeecCC------CeEEEeeCCCCeEEEeEEC
Confidence 99999999998875 599999998 99999986
No 124
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.28 E-value=2.7e-11 Score=126.20 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=91.3
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCC---------hHHH--HHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKS---------YVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~---------~~~~--~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
..|+|+|.....+++++..+.||||||+.+ +... ...+++.+|++++|+|++.+.. .++...
T Consensus 481 ~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s-------~~~~~i 553 (712)
T PRK09518 481 LAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS-------EQDLKV 553 (712)
T ss_pred CCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC-------HHHHHH
Confidence 568999998888889999999999999642 2222 2456788999999999998864 466777
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+..+...++| +|+|+||+|+ .+ +...+.+.+.+...+.... ..+++++||++|.|+.++.+
T Consensus 554 ~~~~~~~~~p-iIiV~NK~DL--~~--~~~~~~~~~~~~~~l~~~~-----~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 554 MSMAVDAGRA-LVLVFNKWDL--MD--EFRRQRLERLWKTEFDRVT-----WARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred HHHHHHcCCC-EEEEEEchhc--CC--hhHHHHHHHHHHHhccCCC-----CCCEEEEECCCCCCHHHHHH
Confidence 7777778888 8999999999 43 2223334444444333333 34789999999999998765
No 125
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.28 E-value=1.5e-11 Score=103.98 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=76.5
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHH---cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~---~~i~~ 92 (383)
|+......++..+..+.||||||+.+|...+...+..+|++|+|+|+++... + ....+.+ ..++. .++|
T Consensus 30 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p- 102 (158)
T cd04151 30 TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR---L---GTAKEELHAMLEEEELKGAV- 102 (158)
T ss_pred ccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCc-
Confidence 3333344566678899999999999998888888999999999999987421 0 1122222 22222 3677
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++++||+|+.... . ..++ ...+....+. ....+++++||++|.|+.++.
T Consensus 103 iiiv~nK~Dl~~~~-~---~~~i----~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 103 LLVFANKQDMPGAL-S---EAEI----SEKLGLSELK-DRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred EEEEEeCCCCCCCC-C---HHHH----HHHhCccccC-CCcEEEEEeeccCCCCHHHHH
Confidence 89999999994321 1 1122 2222111111 123579999999999999853
No 126
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.4e-11 Score=103.99 Aligned_cols=130 Identities=22% Similarity=0.169 Sum_probs=95.6
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCc--EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETT--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~--~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
-.|+.+|+...-+-+|.....++.++. ++++|||+|+++|...+.++.+.|+++|+|.|.+... +|+ ....+
T Consensus 30 ~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~---SF~---~v~~W 103 (205)
T KOG0084|consen 30 KDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQE---SFN---NVKRW 103 (205)
T ss_pred ccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHH---Hhh---hHHHH
Confidence 357888999988888888888887665 5799999999999999999999999999999999754 244 33334
Q ss_pred HHHHHHc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 82 VMLAKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 82 ~~~~~~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+..++.. ++| .++|.||+|+... ..--.++.+.+...++.. .++++||+++.|+++.+
T Consensus 104 i~Ei~~~~~~~v~-~lLVGNK~Dl~~~------~~v~~~~a~~fa~~~~~~-----~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 104 IQEIDRYASENVP-KLLVGNKCDLTEK------RVVSTEEAQEFADELGIP-----IFLETSAKDSTNVEDAF 164 (205)
T ss_pred HHHhhhhccCCCC-eEEEeeccccHhh------eecCHHHHHHHHHhcCCc-----ceeecccCCccCHHHHH
Confidence 4444443 567 6789999999321 111122334455555532 39999999999999853
No 127
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.27 E-value=3.1e-11 Score=102.23 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=73.8
Q ss_pred ceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH------HcCCCeEEE
Q 016750 22 RAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLL 95 (383)
Q Consensus 22 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~------~~~i~~~iv 95 (383)
...+.+.+..+.+|||||+.+|...+...++.+|++++|+|+++... + ......+..+. ..++| +++
T Consensus 37 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~p-~ii 109 (162)
T cd04157 37 VESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR---L---VVVKDELELLLNHPDIKHRRVP-ILF 109 (162)
T ss_pred eEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccccCCCC-EEE
Confidence 34456678889999999999998888888999999999999987531 1 11222222221 23677 889
Q ss_pred EEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 96 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 96 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
++||+|+.... ...+ +...+....+. ....+++++||++|.|++++
T Consensus 110 v~NK~Dl~~~~----~~~~----~~~~l~~~~~~-~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 110 FANKMDLPDAL----TAVK----ITQLLGLENIK-DKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred EEeCccccCCC----CHHH----HHHHhCCcccc-CceEEEEEeeCCCCCchHHH
Confidence 99999994321 1111 22122110001 11346899999999999985
No 128
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.27 E-value=3e-11 Score=119.34 Aligned_cols=115 Identities=21% Similarity=0.253 Sum_probs=87.2
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCC----h----HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKS----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~----~----~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..|+|.+.....+.+++..+.+|||||+.+ + ...+..++..+|++|+|+|+..+.. ..+.+...+
T Consensus 32 ~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~-------~~~~~~~~~ 104 (435)
T PRK00093 32 TPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLT-------PADEEIAKI 104 (435)
T ss_pred CCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHH
Confidence 458999998888999999999999999987 3 3345667889999999999998753 345567778
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
++..++| +|+++||+|+ .+. . ..+.++ ..+++. .++++||.+|.|+.++.
T Consensus 105 l~~~~~p-iilv~NK~D~--~~~-~-------~~~~~~-~~lg~~-----~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 105 LRKSNKP-VILVVNKVDG--PDE-E-------ADAYEF-YSLGLG-----EPYPISAEHGRGIGDLL 154 (435)
T ss_pred HHHcCCc-EEEEEECccC--ccc-h-------hhHHHH-HhcCCC-----CCEEEEeeCCCCHHHHH
Confidence 8888988 8999999997 320 1 111122 234543 57999999999999853
No 129
>PRK09866 hypothetical protein; Provisional
Probab=99.26 E-value=5.4e-11 Score=117.77 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=79.6
Q ss_pred CcEEEEEeCCCCCC-----hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCC--CeEEEEEecCC
Q 016750 29 TTRFTILDAPGHKS-----YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV--TKLLLVVNKMD 101 (383)
Q Consensus 29 ~~~i~liDtPG~~~-----~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i--~~~ivviNK~D 101 (383)
..++.|+||||... +.+.|..++..+|++++|||+..+.. ..+++.++.++..+. | +++++||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s-------~~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKS-------ISDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCC-------hhHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 47899999999643 45567889999999999999987642 456677788887774 7 889999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 102 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+ .+......+.+++.+...+....+. ...++|+||++|.|++++.
T Consensus 301 l--~dreeddkE~Lle~V~~~L~q~~i~---f~eIfPVSAlkG~nid~LL 345 (741)
T PRK09866 301 Q--QDRNSDDADQVRALISGTLMKGCIT---PQQIFPVSSMWGYLANRAR 345 (741)
T ss_pred C--CCcccchHHHHHHHHHHHHHhcCCC---CceEEEEeCCCCCCHHHHH
Confidence 8 4312222344555555444433332 2379999999999999854
No 130
>PTZ00099 rab6; Provisional
Probab=99.26 E-value=7.9e-12 Score=107.80 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=79.2
Q ss_pred CCHHHHhhcceeeccceeeeec--CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 7 TNEEERIKGKTVEVGRAHFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 7 ~~~~E~~rG~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
.++++....+..+.....+..+ ..++.||||||+++|...+...++.||++|+|+|++.... |+ ...+++..
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s---f~---~~~~w~~~ 77 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS---FE---NTTKWIQD 77 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHH
Confidence 3444444334334433334443 4678899999999998888888999999999999987531 21 22233333
Q ss_pred H-HHc--CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 85 A-KTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 85 ~-~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+ ... ++| +|+|.||+|+.... +.. .++...+.+..+ ..++++||++|.|+.++++
T Consensus 78 i~~~~~~~~p-iilVgNK~DL~~~~--~v~----~~e~~~~~~~~~------~~~~e~SAk~g~nV~~lf~ 135 (176)
T PTZ00099 78 ILNERGKDVI-IALVGNKTDLGDLR--KVT----YEEGMQKAQEYN------TMFHETSAKAGHNIKVLFK 135 (176)
T ss_pred HHHhcCCCCe-EEEEEECccccccc--CCC----HHHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 3 222 355 78999999993211 001 112223333332 3689999999999999644
No 131
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.25 E-value=2.5e-11 Score=104.37 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=75.1
Q ss_pred ceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH----HHcCCCeEEEEE
Q 016750 22 RAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVV 97 (383)
Q Consensus 22 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~----~~~~i~~~ivvi 97 (383)
...+..++..+.+|||||++.|...+...++.+|++++|+|++.... + .+..+++..+ ...++| +++++
T Consensus 50 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~iiv~ 122 (173)
T cd04154 50 IKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR---L---DDCKRELKELLQEERLAGAT-LLILA 122 (173)
T ss_pred eEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEE
Confidence 34455678889999999999988777888899999999999987521 1 1122222222 224677 88999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
||+|+.... ..+++...++..... ...++++++||++|.|++++
T Consensus 123 nK~Dl~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 123 NKQDLPGAL--------SEEEIREALELDKIS-SHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred ECcccccCC--------CHHHHHHHhCccccC-CCceEEEeccCCCCcCHHHH
Confidence 999994321 112233333322111 12468999999999999984
No 132
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.25 E-value=1.2e-10 Score=87.46 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=68.0
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC---cEEEEEEEEECCccceecCCCCeEEEEEecCCccCceeeE
Q 016750 184 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 258 (383)
Q Consensus 184 ~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~---~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~ 258 (383)
..|.++| ++.|+++.|+|.+|.|++|+.+.+.|++ ...+|+||+.+++++++|.+|+.|+|.|++++ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 4567777 4578999999999999999999999999 67799999999999999999999999999877 799999
Q ss_pred EE
Q 016750 259 VL 260 (383)
Q Consensus 259 vl 260 (383)
++
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 87
No 133
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.24 E-value=5.9e-11 Score=99.27 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=91.0
Q ss_pred hhcceeeccceeeeecC-cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC-C
Q 016750 13 IKGKTVEVGRAHFETET-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-V 90 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~-~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~-i 90 (383)
.|-+|+-..+..++.++ +.+.|+|||||++|.-.+.-..+.++.++++||++.+.. ...++.+....... +
T Consensus 50 kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~-------~~a~~ii~f~~~~~~i 122 (187)
T COG2229 50 KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT-------FHAEEIIDFLTSRNPI 122 (187)
T ss_pred ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc-------hHHHHHHHHHhhccCC
Confidence 34488888888888766 899999999999999988889999999999999998752 23466777777777 7
Q ss_pred CeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 91 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 91 ~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
| ++|++||.|++.+ |+.+. ++++++.-. .+.++|+++|..+++..+.
T Consensus 123 p-~vVa~NK~DL~~a-~ppe~-------i~e~l~~~~----~~~~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 123 P-VVVAINKQDLFDA-LPPEK-------IREALKLEL----LSVPVIEIDATEGEGARDQ 169 (187)
T ss_pred C-EEEEeeccccCCC-CCHHH-------HHHHHHhcc----CCCceeeeecccchhHHHH
Confidence 7 8999999999655 34333 233333221 1468999999999998874
No 134
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.24 E-value=6.9e-11 Score=100.39 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=72.2
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
....+.+|||||++.|.......++.+|++|+|+|++++.. + ....+++..++.. ++| ++++.||+|+ .
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl--~ 117 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT---Y---KNLSKWYEELREYRPEIP-CIVVANKIDL--D 117 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCc-EEEEEECccC--c
Confidence 34578899999999998888888999999999999987542 1 1233444445443 677 8999999998 2
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+ .. .++...+.+.. ..+++++||++|.|++++.+
T Consensus 118 ~---~~----~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 118 P---SV----TQKKFNFAEKH------NLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred h---hH----HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 1 11 11122223332 24799999999999998543
No 135
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.22 E-value=8e-11 Score=122.67 Aligned_cols=117 Identities=24% Similarity=0.285 Sum_probs=88.3
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCC--------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~--------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
...|+|.+......++++..+.||||||+.. +...+..++..+|++|+|+|++.+.. ..+.+.+.
T Consensus 305 ~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~-------~~d~~i~~ 377 (712)
T PRK09518 305 DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLT-------STDERIVR 377 (712)
T ss_pred CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHH
Confidence 3569999998888889999999999999763 45566778899999999999998753 45566777
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.++..++| +|+|+||+|+ .+. . . ....+ ..+++. ..+++||++|.|+.++.+
T Consensus 378 ~Lr~~~~p-vIlV~NK~D~--~~~-~----~---~~~~~-~~lg~~-----~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 378 MLRRAGKP-VVLAVNKIDD--QAS-E----Y---DAAEF-WKLGLG-----EPYPISAMHGRGVGDLLD 429 (712)
T ss_pred HHHhcCCC-EEEEEECccc--ccc-h----h---hHHHH-HHcCCC-----CeEEEECCCCCCchHHHH
Confidence 88888998 8999999998 321 0 1 11112 223443 457999999999999643
No 136
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.22 E-value=8.6e-11 Score=99.66 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=72.8
Q ss_pred eeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-HH---cCCCeEEEEEe
Q 016750 23 AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVN 98 (383)
Q Consensus 23 ~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~---~~i~~~ivviN 98 (383)
..++....++.||||||+.+|.......++.+|++|+|+|+++... + .+..+.+..+ .. .+.| ++++.|
T Consensus 37 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~N 109 (159)
T cd04150 37 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---I---GEAREELQRMLNEDELRDAV-LLVFAN 109 (159)
T ss_pred EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhcHHhcCCC-EEEEEE
Confidence 3456677889999999999998888888999999999999986421 1 1233333322 21 2466 899999
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 99 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 99 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|+|+.... . .+++.. .+....+. ...+.++++||++|.|++++
T Consensus 110 K~Dl~~~~-~---~~~i~~----~~~~~~~~-~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 110 KQDLPNAM-S---AAEVTD----KLGLHSLR-NRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred CCCCCCCC-C---HHHHHH----HhCccccC-CCCEEEEEeeCCCCCCHHHH
Confidence 99994321 1 112222 22111111 12346789999999999984
No 137
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.22 E-value=9.5e-11 Score=101.64 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=74.5
Q ss_pred ccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-H---HcCCCeEEE
Q 016750 20 VGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLL 95 (383)
Q Consensus 20 ~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~---~~~i~~~iv 95 (383)
.....++.++..+.+|||||+++|...+...++.+|++|+|+|+++... + ...++.+..+ . ..++| +++
T Consensus 51 ~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s---~---~~~~~~l~~~l~~~~~~~~p-iil 123 (181)
T PLN00223 51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLV 123 (181)
T ss_pred eeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcCHhhCCCC-EEE
Confidence 3334566778899999999999998888888999999999999987431 1 1122222221 1 12566 899
Q ss_pred EEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 96 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 96 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+.||+|++... + . +++...+....+. ...+.++++||++|+|+.+..
T Consensus 124 v~NK~Dl~~~~-~---~----~~~~~~l~l~~~~-~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 124 FANKQDLPNAM-N---A----AEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred EEECCCCCCCC-C---H----HHHHHHhCccccC-CCceEEEeccCCCCCCHHHHH
Confidence 99999984321 1 1 2222222211111 112356789999999999853
No 138
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.21 E-value=5e-11 Score=102.10 Aligned_cols=111 Identities=13% Similarity=0.158 Sum_probs=72.8
Q ss_pred eeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH-HHH---HcCCCeEEEEEec
Q 016750 24 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAK---TLGVTKLLLVVNK 99 (383)
Q Consensus 24 ~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~-~~~---~~~i~~~ivviNK 99 (383)
.+..++..+.+|||||+++|.......++.+|++|+|+|+++... ++ ...+.+. .+. ..++| ++++.||
T Consensus 47 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~NK 119 (168)
T cd04149 47 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---ID---EARQELHRIINDREMRDAL-LLVFANK 119 (168)
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh---HH---HHHHHHHHHhcCHhhcCCc-EEEEEEC
Confidence 455677889999999999998877788899999999999987431 11 2223332 222 23567 8999999
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 100 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 100 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+|+... .+ . +++.+.++.-... ....+++++||++|.|+.++
T Consensus 120 ~Dl~~~-~~---~----~~i~~~~~~~~~~-~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 120 QDLPDA-MK---P----HEIQEKLGLTRIR-DRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred cCCccC-CC---H----HHHHHHcCCCccC-CCcEEEEEeeCCCCCChHHH
Confidence 998421 11 1 2233332211111 11347899999999999884
No 139
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.21 E-value=3.6e-11 Score=115.93 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=94.2
Q ss_pred hcceeeccceeeeecCc-EEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFETETT-RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~-~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.++|+......+++.+. .|+|+||||..+ +...+++.+..+|++++|+|++..-.. +...+....+..+
T Consensus 190 p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~---d~~e~~~~l~~eL 266 (390)
T PRK12298 190 PFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGS---DPVENARIIINEL 266 (390)
T ss_pred CCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccccc---ChHHHHHHHHHHH
Confidence 57888888888888754 599999999753 455677788999999999998721000 0001223333444
Q ss_pred HH-----cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 86 KT-----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 86 ~~-----~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
.. .+.| +|+|+||+|+ .+ +... .+.+..+.+..++. .+++++||+++.|++++.+.
T Consensus 267 ~~~~~~L~~kP-~IlVlNKiDl--~~--~~el---~~~l~~l~~~~~~~----~~Vi~ISA~tg~GIdeLl~~------- 327 (390)
T PRK12298 267 EKYSPKLAEKP-RWLVFNKIDL--LD--EEEA---EERAKAIVEALGWE----GPVYLISAASGLGVKELCWD------- 327 (390)
T ss_pred HhhhhhhcCCC-EEEEEeCCcc--CC--hHHH---HHHHHHHHHHhCCC----CCEEEEECCCCcCHHHHHHH-------
Confidence 43 2567 7889999998 32 2222 22333333333321 36899999999999996542
Q ss_pred cccHHHHhhc---cCCCCCCCCCCeeEEEEEEE
Q 016750 161 GPCLFEALDR---IEITPRDPNGPFRMPIIDKF 190 (383)
Q Consensus 161 g~~L~~~l~~---~~~~~~~~~~p~~~~I~~~~ 190 (383)
+.+.+.. +.++...++.+.++.+.+..
T Consensus 328 ---I~~~L~~~~~~~~~~~~td~~~~~~~~Eii 357 (390)
T PRK12298 328 ---LMTFIEENPREEAEEAEAPEKVEFMWDDYH 357 (390)
T ss_pred ---HHHHhhhCcccCCcccccCccHHHHHHHHH
Confidence 3344433 22334445666666666655
No 140
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.20 E-value=6.7e-11 Score=103.22 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=85.1
Q ss_pred CCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+..+++....++.+.....+..++ ..+.||||||+++|...+...++.+|++|||+|.+.... |+ ....++.
T Consensus 29 ~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~---~~~~w~~ 102 (189)
T cd04121 29 GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FD---GIDRWIK 102 (189)
T ss_pred CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHH
Confidence 334444444445554444444444 667899999999998887788899999999999987543 22 3344444
Q ss_pred HHHH--cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKT--LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~--~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+.. .++| +|++.||+|+... + ....++.+.+.+..+ .+++.+||++|.|++++++
T Consensus 103 ~i~~~~~~~p-iilVGNK~DL~~~-----~-~v~~~~~~~~a~~~~------~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 103 EIDEHAPGVP-KILVGNRLHLAFK-----R-QVATEQAQAYAERNG------MTFFEVSPLCNFNITESFT 160 (189)
T ss_pred HHHHhCCCCC-EEEEEECccchhc-----c-CCCHHHHHHHHHHcC------CEEEEecCCCCCCHHHHHH
Confidence 4443 2566 8999999998321 0 011233445555543 4799999999999999654
No 141
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.20 E-value=5.4e-11 Score=101.92 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=77.2
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-H---cCCC
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T---LGVT 91 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~---~~i~ 91 (383)
.|+......++.++..+.+|||||+.++...+...++.+|++++|+|+++... + ....+.+..+. . .+.|
T Consensus 29 ~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s---~---~~~~~~~~~~~~~~~~~~~p 102 (169)
T cd04158 29 PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR---V---SEAHSELAKLLTEKELRDAL 102 (169)
T ss_pred CcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcChhhCCCC
Confidence 34444445567788899999999999998888888999999999999987421 1 12223332222 1 2356
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
++++.||+|+... .+ . +++..+++..++.......++++||++|.|+.+++
T Consensus 103 -iilv~NK~Dl~~~-~~---~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 103 -LLIFANKQDVAGA-LS---V----EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred -EEEEEeCcCcccC-CC---H----HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 8999999999421 11 1 12222222111110113468899999999999954
No 142
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.20 E-value=1.3e-10 Score=99.30 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=76.2
Q ss_pred hcceeeccceeeeecCc-EEEEEeCCCCC-------ChHHHHHHhhhhcCEEEEEEECCCC-ccccccccCCchHHHHHH
Q 016750 14 KGKTVEVGRAHFETETT-RFTILDAPGHK-------SYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVML 84 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~-~i~liDtPG~~-------~~~~~~~~~~~~ad~~ilvvda~~g-~~~~~~~~~~~~~~~~~~ 84 (383)
.|.|++.....+.+++. .++|+||||+. .+...+.+.+..+|++++|+|++.+ .. + .+...+.+.
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~---~---~~~~~~~~~ 104 (170)
T cd01898 31 PFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDP---V---EDYKTIRNE 104 (170)
T ss_pred CccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCH---H---HHHHHHHHH
Confidence 35677777777777776 99999999974 2344555667789999999999875 11 0 122233333
Q ss_pred HHH-----cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 85 AKT-----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 85 ~~~-----~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+.. .++| +++++||+|+... ... .+.+..++.... ..+++++||+++.|+.++
T Consensus 105 l~~~~~~~~~~p-~ivv~NK~Dl~~~----~~~---~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 105 LELYNPELLEKP-RIVVLNKIDLLDE----EEL---FELLKELLKELW-----GKPVFPISALTGEGLDEL 162 (170)
T ss_pred HHHhCccccccc-cEEEEEchhcCCc----hhh---HHHHHHHHhhCC-----CCCEEEEecCCCCCHHHH
Confidence 332 2566 7899999998321 111 122333333321 247999999999999985
No 143
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.19 E-value=8e-11 Score=119.58 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=84.3
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCCChHHH-----HHH-h--hhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPN-----MIS-G--ASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~-----~~~-~--~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
....|+|++.....+++++.+++++||||+.++... +.+ . ...+|++++|+|++.. .+..+..
T Consensus 22 ~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er~l~l~ 92 (591)
T TIGR00437 22 GNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ERNLYLT 92 (591)
T ss_pred cCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hhhHHHH
Confidence 345799999998889999999999999999887432 111 2 2478999999999873 2344455
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..+.+.++| +++++||+|+ .+ +. .+..+.+.+.+.++ .+++++||++|+|++++.+
T Consensus 93 ~ql~~~~~P-iIIVlNK~Dl--~~--~~---~i~~d~~~L~~~lg------~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 93 LQLLELGIP-MILALNLVDE--AE--KK---GIRIDEEKLEERLG------VPVVPTSATEGRGIERLKD 148 (591)
T ss_pred HHHHhcCCC-EEEEEehhHH--HH--hC---CChhhHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 556678888 8899999998 31 11 11112233334443 4799999999999999644
No 144
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.18 E-value=1.8e-10 Score=97.77 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=70.4
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~~ 105 (383)
..+.+|||||+++|...+...++.+|++++|+|+++... |+ ...+++..+.. .++| +++++||+|+...
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~ 122 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS---FE---EVDKFHTQILRVKDRDEFP-MILVGNKADLEHQ 122 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCC-EEEEeeCcccccc
Confidence 568899999999998888888999999999999987532 11 12222222222 3677 8899999998421
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. . ...++...+.+..+ ++++++||++|.|+.++.
T Consensus 123 ~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 123 R--K----VSREEGQELARKLK------IPYIETSAKDRLNVDKAF 156 (164)
T ss_pred c--e----ecHHHHHHHHHHcC------CcEEEeeCCCCCCHHHHH
Confidence 1 0 01122333444433 368999999999999853
No 145
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.18 E-value=1.1e-10 Score=100.59 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=78.0
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHH---cCCC
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVT 91 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~---~~i~ 91 (383)
.|+......+..++..+.++||||+..|.......+..+|++++|+|+++... + ...++.+ ..+.. .++|
T Consensus 45 ~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~---~---~~~~~~l~~~~~~~~~~~~p 118 (174)
T cd04153 45 PTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER---L---PLTKEELYKMLAHEDLRKAV 118 (174)
T ss_pred CccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCC
Confidence 45555556677788899999999999998888888999999999999987531 1 1112222 22222 2467
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++++||+|+... .+ .+++.+.+ ...... ...++++++||++|+|++++.
T Consensus 119 -~viv~NK~Dl~~~-~~---~~~i~~~l----~~~~~~-~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 119 -LLVLANKQDLKGA-MT---PAEISESL----GLTSIR-DHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred -EEEEEECCCCCCC-CC---HHHHHHHh----Cccccc-CCceEEEecccCCCCCHHHHH
Confidence 8999999998431 11 11222222 110011 113579999999999999853
No 146
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.17 E-value=1.1e-10 Score=102.94 Aligned_cols=106 Identities=18% Similarity=0.230 Sum_probs=72.6
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-------cCCCeEEEEEecCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNKMD 101 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-------~~i~~~ivviNK~D 101 (383)
...+.||||||++.|...+...++.+|++|+|+|.+.... |+ ...+++..+.. .++| +++|.||+|
T Consensus 49 ~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~---~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~D 121 (201)
T cd04107 49 VVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FE---AVLKWKADLDSKVTLPNGEPIP-CLLLANKCD 121 (201)
T ss_pred EEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhcccCCCCCc-EEEEEECCC
Confidence 4567899999999998878888999999999999987532 11 11222222221 3567 899999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 102 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+.... ....+++..+.+..++ .+++++||++|.|++++++
T Consensus 122 l~~~~------~~~~~~~~~~~~~~~~-----~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 122 LKKRL------AKDGEQMDQFCKENGF-----IGWFETSAKEGINIEEAMR 161 (201)
T ss_pred ccccc------ccCHHHHHHHHHHcCC-----ceEEEEeCCCCCCHHHHHH
Confidence 93211 1122334455555543 3799999999999999654
No 147
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.17 E-value=1.8e-10 Score=97.44 Aligned_cols=126 Identities=18% Similarity=0.193 Sum_probs=84.5
Q ss_pred CCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 7 TNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 7 ~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
....+...+++.+.....+..++ .++.+|||||+.+|...+...++.+|++++|+|++++.. |+ +...++..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~~~~~~~~ 97 (161)
T cd01861 24 TFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS---FD---NTDKWIDD 97 (161)
T ss_pred CCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHH
Confidence 33445566777777666666655 468999999999998888888999999999999987542 11 22333333
Q ss_pred H-HHcC--CCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 85 A-KTLG--VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 85 ~-~~~~--i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+ ...+ +| +++++||+|+... .+ ...++...+.+..+ .+++++||++|.|++++.
T Consensus 98 ~~~~~~~~~~-iilv~nK~D~~~~--~~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 98 VRDERGNDVI-IVLVGNKTDLSDK--RQ----VSTEEGEKKAKELN------AMFIETSAKAGHNVKELF 154 (161)
T ss_pred HHHhCCCCCE-EEEEEEChhcccc--Cc----cCHHHHHHHHHHhC------CEEEEEeCCCCCCHHHHH
Confidence 3 2333 76 9999999998321 11 11122233333332 479999999999999853
No 148
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.17 E-value=1.4e-10 Score=120.52 Aligned_cols=116 Identities=21% Similarity=0.287 Sum_probs=83.9
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHH--------HH--HHhh--hhcCEEEEEEECCCCccccccccCCchHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVP--------NM--ISGA--SQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~--------~~--~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
-.|+|++.....++++++.++++||||+.+|.. +. ...+ ..+|++++|+|+++.. +...
T Consensus 33 ~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~ 103 (772)
T PRK09554 33 WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLY 103 (772)
T ss_pred CCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHH
Confidence 368999999999999999999999999987742 11 1122 3789999999998743 3444
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
...++.++++| +++++||+|+ .+ +..+. ..++.+.+.+| ++++|+|+.+|+|++++.
T Consensus 104 l~~ql~e~giP-vIvVlNK~Dl--~~--~~~i~---id~~~L~~~LG------~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 104 LTLQLLELGIP-CIVALNMLDI--AE--KQNIR---IDIDALSARLG------CPVIPLVSTRGRGIEALK 160 (772)
T ss_pred HHHHHHHcCCC-EEEEEEchhh--hh--ccCcH---HHHHHHHHHhC------CCEEEEEeecCCCHHHHH
Confidence 55677888999 8899999998 32 11111 22333334444 479999999999999853
No 149
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.16 E-value=1.1e-10 Score=101.33 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=70.3
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccC-CchHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKG-GQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~ 106 (383)
.+..+.+|||||+++|...+...++.+|++++|+|+++... ++.. ....++.......++| +++++||+|+...
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~- 124 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVER---MEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA- 124 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc-
Confidence 45689999999999988777777889999999999987521 1000 0111122223345677 8999999998321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+. ++ +..++....+......+++++||++|+|++++.+
T Consensus 125 ~~~---~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 125 LSV---SE----VEKLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred CCH---HH----HHHHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 111 11 2222211111101135689999999999999654
No 150
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.16 E-value=1.1e-10 Score=98.91 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=76.8
Q ss_pred hhcceeeccceeeeec----CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-
Q 016750 13 IKGKTVEVGRAHFETE----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT- 87 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~----~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~- 87 (383)
.+.++.+.....+..+ ...+.||||||+++|...+...++.+|++++|+|+++... ++ ....++..+..
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~l~~~~~~~~~~ 103 (162)
T cd04106 30 KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES---FE---AIESWKEKVEAE 103 (162)
T ss_pred CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHh
Confidence 3444444433333333 4578999999999998888888999999999999987542 11 11222222222
Q ss_pred -cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 88 -LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 88 -~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.++| +++++||+|+. +... ...++...+.+..+ .+++++|+++|.|++++
T Consensus 104 ~~~~p-~iiv~nK~Dl~--~~~~----v~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 104 CGDIP-MVLVQTKIDLL--DQAV----ITNEEAEALAKRLQ------LPLFRTSVKDDFNVTEL 154 (162)
T ss_pred CCCCC-EEEEEEChhcc--cccC----CCHHHHHHHHHHcC------CeEEEEECCCCCCHHHH
Confidence 3677 88999999983 2110 01122334444444 37999999999999884
No 151
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.16 E-value=5.8e-11 Score=99.29 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=82.6
Q ss_pred CCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccC--CchHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKG--GQTREH 81 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~--~~~~~~ 81 (383)
+..+.+..+++|.+.....+..++ ..+.+|||||+.++..........++.++.++|....+.. +... ......
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~--~~~~~~~~~~~~ 101 (161)
T TIGR00231 24 NKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLD--VEEILEKQTKEI 101 (161)
T ss_pred CCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehh--hhhHhHHHHHHH
Confidence 445667777888888877777777 7789999999999866555556666666666665543211 1100 122222
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
...+.. +.| +++++||+|+ .... ........+...+. .+++++||.+|.|+.++
T Consensus 102 ~~~~~~-~~p-~ivv~nK~D~--~~~~------~~~~~~~~~~~~~~-----~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 102 IHHAES-NVP-IILVGNKIDL--RDAK------LKTHVAFLFAKLNG-----EPIIPLSAETGKNIDSA 155 (161)
T ss_pred HHhccc-CCc-EEEEEEcccC--Ccch------hhHHHHHHHhhccC-----CceEEeecCCCCCHHHH
Confidence 222222 777 8899999999 3211 33344445555443 36999999999999984
No 152
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.16 E-value=1.4e-10 Score=99.99 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=74.5
Q ss_pred ceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEE
Q 016750 22 RAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVV 97 (383)
Q Consensus 22 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivvi 97 (383)
...+..++..+.||||||+.+|...+...++.+|++|+|+|+++... + ....+.+..+.. .++| ++++.
T Consensus 49 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~ 121 (175)
T smart00177 49 VETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR---I---DEAREELHRMLNEDELRDAV-ILVFA 121 (175)
T ss_pred eEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHhhCHhhcCCc-EEEEE
Confidence 33455677889999999999998888888899999999999986431 1 133344433321 2466 89999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
||+|++... +. +++.+ .+...... ...+.++++||++|+|+.+++
T Consensus 122 NK~Dl~~~~-~~---~~i~~----~~~~~~~~-~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 122 NKQDLPDAM-KA---AEITE----KLGLHSIR-DRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred eCcCcccCC-CH---HHHHH----HhCccccC-CCcEEEEEeeCCCCCCHHHHH
Confidence 999994321 11 12222 22111111 123467899999999999853
No 153
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.16 E-value=5.9e-11 Score=100.58 Aligned_cols=123 Identities=22% Similarity=0.242 Sum_probs=79.7
Q ss_pred HHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH
Q 016750 10 EERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT 87 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~ 87 (383)
.+.....+.+.....+..++ ..+.||||||+++|.......++.+|++++|+|++++.. ++ +....+..++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~ 100 (161)
T cd04113 27 EDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS---FE---ALPTWLSDARA 100 (161)
T ss_pred CCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHH
Confidence 33334444444333344333 568899999999998888888899999999999988642 11 22333333332
Q ss_pred ---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 ---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 ---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.++| ++++.||+|+... . ....++...+.+..+ .+++++||++|.|+.++.
T Consensus 101 ~~~~~~~-iivv~nK~D~~~~--~----~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 101 LASPNIV-VILVGNKSDLADQ--R----EVTFLEASRFAQENG------LLFLETSALTGENVEEAF 154 (161)
T ss_pred hCCCCCe-EEEEEEchhcchh--c----cCCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 3676 8899999998321 0 111223334444443 479999999999999853
No 154
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.16 E-value=2.4e-10 Score=99.20 Aligned_cols=115 Identities=16% Similarity=0.207 Sum_probs=74.9
Q ss_pred eeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEE
Q 016750 23 AHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVV 97 (383)
Q Consensus 23 ~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivvi 97 (383)
..+..++ ..+.+|||+|+++|.......++.+|++++|+|.++..+ |+ ...+++..+... ..| |+|.
T Consensus 40 ~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s---~~---~i~~~~~~~~~~~~~~~p--ilVg 111 (182)
T cd04128 40 KTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKST---LN---SIKEWYRQARGFNKTAIP--ILVG 111 (182)
T ss_pred EEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE--EEEE
Confidence 3444444 567999999999998877778899999999999987542 11 222344444432 233 5789
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
||+|+... .+......+.++...+.+..+ .+++++||++|.|++++.+
T Consensus 112 nK~Dl~~~-~~~~~~~~~~~~~~~~a~~~~------~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 112 TKYDLFAD-LPPEEQEEITKQARKYAKAMK------APLIFCSTSHSINVQKIFK 159 (182)
T ss_pred Echhcccc-ccchhhhhhHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 99998321 111111122344445555543 4799999999999999654
No 155
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.16 E-value=1.6e-10 Score=97.78 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=70.5
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH-HH---HcCCCeEEEEEecCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AK---TLGVTKLLLVVNKMDDH 103 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~-~~---~~~i~~~ivviNK~D~~ 103 (383)
.+..+.+|||||+..+...+...+..+|++++|+|+.++.. + ......+.. ++ ..+.| +++++||+|++
T Consensus 42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 114 (160)
T cd04156 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR---L---DESQKELKHILKNEHIKGVP-VVLLANKQDLP 114 (160)
T ss_pred CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECcccc
Confidence 35689999999999988888888999999999999987531 1 122222222 22 14677 99999999984
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
... . .+++. ..++...+......+++++||++|+|++++.
T Consensus 115 ~~~-~---~~~i~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 115 GAL-T---AEEIT----RRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred cCc-C---HHHHH----HHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 211 1 11222 2221111111124579999999999999853
No 156
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.16 E-value=1.1e-10 Score=100.22 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=80.3
Q ss_pred cCCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 5 MDTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
.+..+++....+..+.....+..++ .++.||||||+++|.......++.+|++++|+|+++... + ....+++
T Consensus 22 ~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~ 95 (170)
T cd04108 22 KDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVAS---L---EHTRQWL 95 (170)
T ss_pred cCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHH
Confidence 3444444333333343333444443 568999999999998888888999999999999977431 1 1233344
Q ss_pred HHHHHcCC---CeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 83 MLAKTLGV---TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 83 ~~~~~~~i---~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..+..... +.+++|.||+|+... .......++...+.+.++ .+++++||++|.|++++.+
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~~----~~~~~~~~~~~~~~~~~~------~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSSP----AQYALMEQDAIKLAAEMQ------AEYWSVSALSGENVREFFF 158 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCcc----ccccccHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 33332221 237899999998321 111112223333444433 3689999999999998644
No 157
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.15 E-value=1.7e-10 Score=98.39 Aligned_cols=119 Identities=20% Similarity=0.175 Sum_probs=77.8
Q ss_pred hcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---c
Q 016750 14 KGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---L 88 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~ 88 (383)
..++.+.....+..++ ..+.+|||||+++|.......++.+|++++|+|+++... |+ +..+++..+.. .
T Consensus 33 ~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~l~~~~~~~~~~~~~ 106 (166)
T cd01869 33 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLQEIDRYASE 106 (166)
T ss_pred CccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCC
Confidence 3444444444454443 468999999999998888888899999999999987432 21 23334444433 2
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
++| ++++.||+|+.... .. ..++...+.+..+ ++++++||++|.|+.++.
T Consensus 107 ~~~-~iiv~nK~Dl~~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 107 NVN-KLLVGNKCDLTDKR--VV----DYSEAQEFADELG------IPFLETSAKNATNVEQAF 156 (166)
T ss_pred CCc-EEEEEEChhccccc--CC----CHHHHHHHHHHcC------CeEEEEECCCCcCHHHHH
Confidence 466 88999999983211 10 1122333334333 479999999999999854
No 158
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.15 E-value=2.2e-10 Score=97.72 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=74.2
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCCh-------H-HHHHHhh-hhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSY-------V-PNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~-------~-~~~~~~~-~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
..+.|.+.....+.+++..++||||||+.+. . .....++ ..+|++|+|+|++.... ++ .....+.+.
T Consensus 30 ~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~-~~~~~~~~~ 105 (168)
T cd01897 30 YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YS-LEEQLSLFE 105 (168)
T ss_pred CCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cc-hHHHHHHHH
Confidence 3466777766667777889999999998421 1 1222222 34799999999986431 00 011223444
Q ss_pred HHHHc--CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 84 LAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 84 ~~~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.++.. ++| +|+++||+|+. + .....+ ...+.+. . ..+++++||++|.|++++.
T Consensus 106 ~l~~~~~~~p-vilv~NK~Dl~--~--~~~~~~----~~~~~~~-~-----~~~~~~~Sa~~~~gi~~l~ 160 (168)
T cd01897 106 EIKPLFKNKP-VIVVLNKIDLL--T--FEDLSE----IEEEEEL-E-----GEEVLKISTLTEEGVDEVK 160 (168)
T ss_pred HHHhhcCcCC-eEEEEEccccC--c--hhhHHH----HHHhhhh-c-----cCceEEEEecccCCHHHHH
Confidence 45444 677 99999999983 2 122222 2222221 1 3579999999999999853
No 159
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.13 E-value=2.8e-10 Score=97.07 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=74.3
Q ss_pred ceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH--cCCCeEEEEEec
Q 016750 22 RAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNK 99 (383)
Q Consensus 22 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--~~i~~~ivviNK 99 (383)
...+...+..+.+|||||+.+|...+...++.+|++++|+|+++... + ...++.+..+.. .++| ++++.||
T Consensus 36 ~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s---~---~~~~~~l~~~~~~~~~~p-iilv~NK 108 (164)
T cd04162 36 SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER---L---PLARQELHQLLQHPPDLP-LVVLANK 108 (164)
T ss_pred eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCCCCCc-EEEEEeC
Confidence 34566678899999999999998888889999999999999987531 1 122333333322 3677 8999999
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccc------ccccccc
Q 016750 100 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM------GLNMKTR 150 (383)
Q Consensus 100 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~------g~~i~~~ 150 (383)
+|+.... ...++.+. +....+.....+.++++||++ ++|+.++
T Consensus 109 ~Dl~~~~----~~~~i~~~----~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 109 QDLPAAR----SVQEIHKE----LELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred cCCcCCC----CHHHHHHH----hCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 9984321 11222221 111112112245788888888 8888874
No 160
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.13 E-value=1.2e-10 Score=99.43 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=77.0
Q ss_pred hhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---
Q 016750 13 IKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--- 87 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--- 87 (383)
...++.+.....+..++ ..+.+|||||+++|.......++.+|++++|+|++++.. |+ +..+.+..+..
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~ 106 (167)
T cd01867 33 ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS---FE---NIRNWMRNIEEHAS 106 (167)
T ss_pred ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCC
Confidence 33333333333344444 467999999999988877788899999999999987542 22 22333333333
Q ss_pred cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 ~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.++| ++++.||+|+.... + ...++...+.+..+ .+++++||++|.|+.++.
T Consensus 107 ~~~p-~iiv~nK~Dl~~~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 107 EDVE-RMLVGNKCDMEEKR--V----VSKEEGEALADEYG------IKFLETSAKANINVEEAF 157 (167)
T ss_pred CCCc-EEEEEECccccccc--C----CCHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 3566 88999999994211 0 01122333344332 479999999999999954
No 161
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.13 E-value=1.8e-10 Score=97.66 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=75.3
Q ss_pred ccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEE
Q 016750 20 VGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLV 96 (383)
Q Consensus 20 ~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivv 96 (383)
.....+...+..+.+|||||+++|.......++.+|++++|+|++.+.. + .+...++..+... ++| ++++
T Consensus 40 ~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iivv 112 (163)
T cd01860 40 TQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEES---F---EKAKSWVKELQRNASPNII-IALV 112 (163)
T ss_pred EEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEE
Confidence 3333444445678999999999988877778889999999999986532 1 1334444444443 355 8899
Q ss_pred EecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 97 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 97 iNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+||+|+.... . ...++...+....+ .+++++||++|.|+.++.
T Consensus 113 ~nK~D~~~~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 113 GNKADLESKR--Q----VSTEEAQEYADENG------LLFFETSAKTGENVNELF 155 (163)
T ss_pred EECccccccC--c----CCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 9999984211 0 11122333344433 479999999999999853
No 162
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.13 E-value=2.3e-10 Score=96.61 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=77.3
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~ 92 (383)
|+......+++++..+.+|||||+..|.......+..+|++++|+|++.+.. + ....+++..+. ..+.|
T Consensus 30 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p- 102 (158)
T cd00878 30 TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER---I---EEAKEELHKLLNEEELKGVP- 102 (158)
T ss_pred CcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-
Confidence 3444445566678899999999999987777778889999999999987521 1 12233332222 23677
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++++||+|+... ...+++.+.+.... .. ....+++++||++|.|++++
T Consensus 103 iiiv~nK~D~~~~----~~~~~~~~~~~~~~--~~---~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 103 LLIFANKQDLPGA----LSVSELIEKLGLEK--IL---GRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred EEEEeeccCCccc----cCHHHHHHhhChhh--cc---CCcEEEEEeeCCCCCCHHHH
Confidence 8999999998421 11223333222111 01 12468999999999999985
No 163
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.12 E-value=2.6e-10 Score=100.33 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=74.9
Q ss_pred CCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChH--------HHHHHhhhhcCEEEEEEECCCCccccccccC
Q 016750 6 DTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKG 75 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~--------~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~ 75 (383)
+..+++....++.+.....+.+++ ..+.||||||+.+|. .....+++.+|++|+|+|++++.. |+
T Consensus 23 ~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S---~~-- 97 (198)
T cd04142 23 QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDS---FH-- 97 (198)
T ss_pred CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHH---HH--
Confidence 344444333333343333444555 567899999987642 113445789999999999987532 11
Q ss_pred CchHHHHHHHHH------cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccc
Q 016750 76 GQTREHVMLAKT------LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 76 ~~~~~~~~~~~~------~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~ 149 (383)
....++..+.. .++| ++++.||+|+.... .. ..+++..+.++. + .++++++||++|.|+++
T Consensus 98 -~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~-----~~-~~~~~~~~~~~~-~----~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 98 -YVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHR-----FA-PRHVLSVLVRKS-W----KCGYLECSAKYNWHILL 164 (198)
T ss_pred -HHHHHHHHHHHhcccCCCCCC-EEEEEECccccccc-----cc-cHHHHHHHHHHh-c----CCcEEEecCCCCCCHHH
Confidence 12222222222 3577 88999999993211 10 111223332221 1 35799999999999999
Q ss_pred ccc
Q 016750 150 RVD 152 (383)
Q Consensus 150 ~~~ 152 (383)
+++
T Consensus 165 lf~ 167 (198)
T cd04142 165 LFK 167 (198)
T ss_pred HHH
Confidence 654
No 164
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.12 E-value=2.3e-10 Score=98.82 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=71.9
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc----CCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~----~i~~~ivviNK~D~~~ 104 (383)
...+.||||||+++|.......++.+|++++|+|+++... |. ....++..+... +.| +++|.||+|+..
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~ 134 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQS---FL---NVRNWMSQLQTHAYCENPD-IVLCGNKADLED 134 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEeCccchh
Confidence 3678899999999998888888999999999999987432 11 223333333332 455 889999999932
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. .+ ...++...+.+..+ .+++++||++|.|++++.+
T Consensus 135 ~--~~----v~~~~~~~~~~~~~------~~~~e~Sak~~~~v~~l~~ 170 (180)
T cd04127 135 Q--RQ----VSEEQAKALADKYG------IPYFETSAATGTNVEKAVE 170 (180)
T ss_pred c--Cc----cCHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 1 11 01123344444443 4799999999999998644
No 165
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.12 E-value=1.2e-10 Score=99.33 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=71.3
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivviNK~D~~~~ 105 (383)
...+.+|||||+++|.......++.+|++|+|+|.++... |+ ...+++..+... +.| ++++.||+|+...
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~ 122 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQ 122 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccc
Confidence 4567999999999998888888999999999999987542 11 223333333332 455 8899999999421
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. + ...++...+.+..+ .+++++||++|.|+.++.
T Consensus 123 ~--~----~~~~~~~~~~~~~~------~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 123 R--D----VTYEEAKQFADENG------LLFLECSAKTGENVEDAF 156 (166)
T ss_pred c--C----cCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 1 0 11222333444333 479999999999999853
No 166
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.12 E-value=3.3e-10 Score=96.94 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+..+++....++.+.....+..++ ..+.||||||+++|.......++.+|++++|+|.++... ++ ...++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~ 101 (170)
T cd04116 28 NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS---FQ---NLSNWKK 101 (170)
T ss_pred CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---hHHHHHH
Confidence 333333333333333333344444 456889999999998888888899999999999987542 11 1122222
Q ss_pred HHH-------HcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 84 LAK-------TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 84 ~~~-------~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+. ..++| ++++.||+|+..... ..+++.++++..+. .+++++||++|.|+.++.
T Consensus 102 ~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 102 EFIYYADVKEPESFP-FVVLGNKNDIPERQV-------STEEAQAWCRENGD-----YPYFETSAKDATNVAAAF 163 (170)
T ss_pred HHHHhcccccCCCCc-EEEEEECcccccccc-------CHHHHHHHHHHCCC-----CeEEEEECCCCCCHHHHH
Confidence 111 13467 899999999832111 12334445555442 379999999999999853
No 167
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.11 E-value=5.2e-10 Score=98.42 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=71.9
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH--cCCCeEEEEEecCCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--~~i~~~ivviNK~D~~~~~ 106 (383)
...+.||||||+++|...+..+++.+|++|+|+|.+...+ |+ ....++..+.. .++| +++|.||+|+....
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~ 115 (200)
T smart00176 43 PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDVKDRK 115 (200)
T ss_pred EEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 4678999999999998888888999999999999998642 11 22233343443 3677 88999999983211
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
... +.+ .+.+.. .+.++++||++|.|+.+++.
T Consensus 116 v~~-------~~~-~~~~~~------~~~~~e~SAk~~~~v~~~F~ 147 (200)
T smart00176 116 VKA-------KSI-TFHRKK------NLQYYDISAKSNYNFEKPFL 147 (200)
T ss_pred CCH-------HHH-HHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 111 111 222322 35799999999999999654
No 168
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.11 E-value=1.7e-10 Score=100.88 Aligned_cols=105 Identities=20% Similarity=0.241 Sum_probs=71.1
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivviNK~D~~~~ 105 (383)
...++||||||+.+|.......++.+|++|+|+|++.... ++ +....+..+... ++| +++++||+|+...
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~ 121 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS---FD---NIRAWLTEIKEYAQEDVV-IMLLGNKADMSGE 121 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEEcccchhc
Confidence 3578899999999988877788899999999999987532 11 223334444433 566 8899999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. + ...++...+.+..+ .+++++||++|.|++++..
T Consensus 122 ~--~----~~~~~~~~l~~~~~------~~~~e~Sa~~~~~v~~l~~ 156 (191)
T cd04112 122 R--V----VKREDGERLAKEYG------VPFMETSAKTGLNVELAFT 156 (191)
T ss_pred c--c----cCHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 1 0 01122333334333 4799999999999999643
No 169
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.11 E-value=3.3e-10 Score=96.86 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=71.1
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~~ivviNK~D~~~~ 105 (383)
...+.+|||||+++|.......++.+|++++|+|+++... ++ ....++..++. .++| ++++.||+|+...
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~ 124 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLTSWLEDARQHSNSNMT-IMLIGNKCDLESR 124 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 4578999999999988888888899999999999986432 11 22333333433 2566 8999999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.. ...++...+.+..+ .+++++||++|+|++++.
T Consensus 125 --~~----~~~~~~~~~~~~~~------~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 125 --RE----VSYEEGEAFAKEHG------LIFMETSAKTASNVEEAF 158 (168)
T ss_pred --cC----CCHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 00 11122333444433 479999999999999853
No 170
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.11 E-value=5e-10 Score=97.19 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=74.0
Q ss_pred ceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-HH---cCCCeEEEEE
Q 016750 22 RAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVV 97 (383)
Q Consensus 22 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~---~~i~~~ivvi 97 (383)
...++..+..+.+|||||+++|...+...++.+|++|+|+|+++... ++ ...+.+..+ .. ..+| ++++.
T Consensus 53 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s---~~---~~~~~l~~~~~~~~~~~~p-iilv~ 125 (182)
T PTZ00133 53 VETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER---IG---DAREELERMLSEDELRDAV-LLVFA 125 (182)
T ss_pred eEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHhCHhhcCCC-EEEEE
Confidence 34456678899999999999998888888999999999999986321 11 223333222 21 2456 89999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
||.|++... +. +++.. .+....+. ...+.++++||++|.|+.++++
T Consensus 126 NK~Dl~~~~-~~---~~i~~----~l~~~~~~-~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 126 NKQDLPNAM-ST---TEVTE----KLGLHSVR-QRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred eCCCCCCCC-CH---HHHHH----HhCCCccc-CCcEEEEeeeCCCCCCHHHHHH
Confidence 999984321 11 12222 22111111 1234677899999999999543
No 171
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.10 E-value=2.7e-10 Score=96.54 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=78.6
Q ss_pred HHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-
Q 016750 11 ERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT- 87 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~- 87 (383)
+..+.++.+.....+..++ ..+.+|||||+.+|.......++.+|++++|+|+++... ++ ....++..+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~l~~~~~~ 101 (164)
T smart00175 28 QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES---FE---NLKNWLKELREY 101 (164)
T ss_pred CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHh
Confidence 3334444444444455544 578899999999998888888999999999999987542 11 11222233322
Q ss_pred --cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 --LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 --~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.++| +++++||+|+... .+.. .+....+.+..+ .+++++|+.+|.|++++.
T Consensus 102 ~~~~~p-ivvv~nK~D~~~~--~~~~----~~~~~~~~~~~~------~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 102 ADPNVV-IMLVGNKSDLEDQ--RQVS----REEAEAFAEEHG------LPFFETSAKTNTNVEEAF 154 (164)
T ss_pred CCCCCe-EEEEEEchhcccc--cCCC----HHHHHHHHHHcC------CeEEEEeCCCCCCHHHHH
Confidence 3577 8999999998321 0001 112223344433 469999999999999853
No 172
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.10 E-value=3.7e-10 Score=95.37 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=69.3
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~~ 105 (383)
..+.+|||||+++|...+...++.+|++++|+|.++... |+ .....+..+.. .++| ++++.||+|+...
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~ 121 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKS---FE---DIHTYREQIKRVKDSDDVP-MVLVGNKCDLAAR 121 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 457889999999998888888999999999999986431 11 11222222222 3667 8899999998421
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. ...++...+.+..+ .+++++||++|.|++++.
T Consensus 122 ~-------~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 122 T-------VSSRQGQDLAKSYG------IPYIETSAKTRQGVEEAF 154 (162)
T ss_pred e-------ecHHHHHHHHHHhC------CeEEEecCCCCCCHHHHH
Confidence 1 11222333344433 479999999999999853
No 173
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.10 E-value=1.6e-10 Score=98.46 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=71.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivviNK~D~~~~ 105 (383)
...+.+|||||+++|.......++.+|++++|+|.++... ++ +..+++..+... ..| +++++||+|+...
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~ 121 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDE 121 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCC-EEEEEECcccCcc
Confidence 3578999999999998888888999999999999986432 21 333444444432 455 8999999999321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. .. ..++...+.+.++ .+++++||++|.|+.++.
T Consensus 122 ~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 122 R--VV----SSERGRQLADQLG------FEFFEASAKENINVKQVF 155 (165)
T ss_pred c--cc----CHHHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 1 10 0122233334443 369999999999999854
No 174
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.10 E-value=7.1e-10 Score=104.95 Aligned_cols=120 Identities=16% Similarity=0.136 Sum_probs=78.8
Q ss_pred hcceeeccceeeee-cCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFET-ETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~-~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.++|++.....+.+ ++..|+++||||..+ +....++.+..+|++++|+|++.... + .+...+...+
T Consensus 189 pfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~---e~~~~~~~EL 262 (335)
T PRK12299 189 PFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---V---EDYKTIRNEL 262 (335)
T ss_pred CCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---H---HHHHHHHHHH
Confidence 36888888888887 567899999999742 44556677888999999999986421 1 1222233333
Q ss_pred HH-----cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KT-----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~-----~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. .++| +++|+||+|+... .... .+.+..+++..+ .+++++||++++|++++.+
T Consensus 263 ~~~~~~L~~kp-~IIV~NKiDL~~~---~~~~---~~~~~~~~~~~~------~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 263 EKYSPELADKP-RILVLNKIDLLDE---EEER---EKRAALELAALG------GPVFLISAVTGEGLDELLR 321 (335)
T ss_pred HHhhhhcccCC-eEEEEECcccCCc---hhHH---HHHHHHHHHhcC------CCEEEEEcCCCCCHHHHHH
Confidence 32 2566 8899999998321 1111 112222233322 4799999999999999643
No 175
>PRK04213 GTP-binding protein; Provisional
Probab=99.10 E-value=3.4e-10 Score=99.74 Aligned_cols=129 Identities=20% Similarity=0.246 Sum_probs=75.0
Q ss_pred CHHHHhhcceeeccceeeeecCcEEEEEeCCCCC-----------ChHHHHH----HhhhhcCEEEEEEECCCCcc-ccc
Q 016750 8 NEEERIKGKTVEVGRAHFETETTRFTILDAPGHK-----------SYVPNMI----SGASQADIGVLVISARKGEF-ETG 71 (383)
Q Consensus 8 ~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~-----------~~~~~~~----~~~~~ad~~ilvvda~~g~~-~~~ 71 (383)
.+.+...|+|++... +.+. .+++|||||+. .|...+. .++..+|++++|+|+..... ...
T Consensus 34 ~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~ 109 (201)
T PRK04213 34 VRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIER 109 (201)
T ss_pred CccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccc
Confidence 344456688887654 3333 68999999952 2322222 24456789999999865210 000
Q ss_pred ccc---CCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCC-C--CCCceEEEccccccc
Q 016750 72 FEK---GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN-V--KKDVQFLPISGLMGL 145 (383)
Q Consensus 72 ~~~---~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~iSa~~g~ 145 (383)
+.. ...+.+++..+...++| +++++||+|+ .+.. .+..+++.. .++.. + ....+++++||++|
T Consensus 110 ~~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl--~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g- 178 (201)
T PRK04213 110 WEGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDK--IKNR----DEVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG- 178 (201)
T ss_pred cccCCCcHHHHHHHHHHHHcCCC-eEEEEECccc--cCcH----HHHHHHHHH---HhcCCccccccCCcEEEEecccC-
Confidence 100 02345667777778898 8899999999 3211 122223322 22321 0 00126899999999
Q ss_pred cccccc
Q 016750 146 NMKTRV 151 (383)
Q Consensus 146 ~i~~~~ 151 (383)
|++++.
T Consensus 179 gi~~l~ 184 (201)
T PRK04213 179 GIEELK 184 (201)
T ss_pred CHHHHH
Confidence 999853
No 176
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=7.8e-11 Score=98.30 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=85.8
Q ss_pred ceeeccceeeeecCcE--EEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CC
Q 016750 16 KTVEVGRAHFETETTR--FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GV 90 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~--i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i 90 (383)
+-++.+...++.++++ +++|||+||+.|.+-+.++++.|-.||||.|.+...+ |. ....+|.-++.. ++
T Consensus 39 iGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~s---F~---hL~~wL~D~rq~~~~Nm 112 (216)
T KOG0098|consen 39 IGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRES---FN---HLTSWLEDARQHSNENM 112 (216)
T ss_pred eeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhh---HH---HHHHHHHHHHHhcCCCc
Confidence 3345555566666655 5899999999999999999999999999999987542 33 334455555554 34
Q ss_pred CeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 91 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 91 ~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. ++++.||+|+. .+.+--.++-..+.++.|+ .+..+||++++|+++.+
T Consensus 113 v-ImLiGNKsDL~------~rR~Vs~EEGeaFA~ehgL------ifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 113 V-IMLIGNKSDLE------ARREVSKEEGEAFAREHGL------IFMETSAKTAENVEEAF 160 (216)
T ss_pred E-EEEEcchhhhh------ccccccHHHHHHHHHHcCc------eeehhhhhhhhhHHHHH
Confidence 3 67788999993 2234445667778888775 58899999999999853
No 177
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.10 E-value=2.6e-10 Score=96.51 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=70.4
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 103 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~ 103 (383)
...++.||||||+++|.......++.+|++++|+|+++... ++ ....++..+.. .+.| +++++||+|+.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~ 119 (161)
T cd01863 47 KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT---FT---NLETWLNELETYSTNNDIV-KMLVGNKIDKE 119 (161)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhCCCCCCc-EEEEEECCccc
Confidence 34678999999999998777778889999999999987542 11 12223333332 3566 78999999994
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
...... ++...+.+.. .++++++|+++|.|++++.
T Consensus 120 ~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 120 NREVTR-------EEGLKFARKH------NMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ccccCH-------HHHHHHHHHc------CCEEEEEecCCCCCHHHHH
Confidence 222111 2223333333 3479999999999999853
No 178
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.09 E-value=7.6e-10 Score=94.94 Aligned_cols=124 Identities=17% Similarity=0.164 Sum_probs=77.5
Q ss_pred Hhhcceeeccceeeeec-CcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCcc---ccccccCCchHH
Q 016750 12 RIKGKTVEVGRAHFETE-TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEF---ETGFEKGGQTRE 80 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~-~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~---~~~~~~~~~~~~ 80 (383)
...++|++.....+.++ +..+.||||||+.+ +...+...+..+|++++|+|+..... ...+ .....
T Consensus 25 ~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~ 101 (176)
T cd01881 25 NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPL---EDYEI 101 (176)
T ss_pred CCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHH---HHHHH
Confidence 34578888888888888 89999999999733 23355667888999999999987520 0000 11112
Q ss_pred HHHHHH----------HcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 81 HVMLAK----------TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 81 ~~~~~~----------~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+...+. ..++| +++++||+|+... ....... ....... ...+++++||+++.|+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~----~~~~~~~--~~~~~~~------~~~~~~~~Sa~~~~gl~~l 168 (176)
T cd01881 102 LNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDA----EELEEEL--VRELALE------EGAEVVPISAKTEEGLDEL 168 (176)
T ss_pred HHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCch----hHHHHHH--HHHHhcC------CCCCEEEEehhhhcCHHHH
Confidence 222222 13677 8899999999321 1111111 1111111 1347999999999999985
Q ss_pred c
Q 016750 151 V 151 (383)
Q Consensus 151 ~ 151 (383)
.
T Consensus 169 ~ 169 (176)
T cd01881 169 I 169 (176)
T ss_pred H
Confidence 3
No 179
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.09 E-value=3.1e-10 Score=92.80 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=71.5
Q ss_pred EEEeCCC----CCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc
Q 016750 33 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 108 (383)
Q Consensus 33 ~liDtPG----~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~ 108 (383)
.+||||| +..|.+.++.....||++++|.||+.+.. ..--..+..++.| +|-||||+|++. +
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~----------~~pP~fa~~f~~p-vIGVITK~Dl~~---~ 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS----------VFPPGFASMFNKP-VIGVITKIDLPS---D 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc----------cCCchhhcccCCC-EEEEEECccCcc---c
Confidence 4699999 55678888888899999999999998531 1122445667777 999999999941 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.+ -.+...++|+..|+. +++++|+.+|+|++++
T Consensus 105 ~~----~i~~a~~~L~~aG~~-----~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 105 DA----NIERAKKWLKNAGVK-----EIFEVSAVTGEGIEEL 137 (143)
T ss_pred hh----hHHHHHHHHHHcCCC-----CeEEEECCCCcCHHHH
Confidence 22 234455677778876 6799999999999984
No 180
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.08 E-value=2.1e-10 Score=97.63 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=78.7
Q ss_pred HHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-
Q 016750 11 ERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT- 87 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~- 87 (383)
+....++.+.....+..++ ..+.+|||||+++|.......++.+|++++|+|+++..+ ++ ...+.+..+..
T Consensus 31 ~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~ 104 (165)
T cd01868 31 DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT---FE---NVERWLKELRDH 104 (165)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHh
Confidence 3344455555555555555 467899999999988877888899999999999986432 11 22233333333
Q ss_pred --cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 --LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 --~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.++| ++++.||+|+.... + ...++...+.... ..+++++||++|.|+.++.
T Consensus 105 ~~~~~p-i~vv~nK~Dl~~~~--~----~~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 105 ADSNIV-IMLVGNKSDLRHLR--A----VPTEEAKAFAEKN------GLSFIETSALDGTNVEEAF 157 (165)
T ss_pred CCCCCe-EEEEEECccccccc--c----CCHHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 2466 88999999983211 1 1112233333332 2479999999999999853
No 181
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.1e-10 Score=98.22 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=80.5
Q ss_pred eeccceeeeecCc--EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCe
Q 016750 18 VEVGRAHFETETT--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTK 92 (383)
Q Consensus 18 i~~~~~~~~~~~~--~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~ 92 (383)
||.....++.++. .+.+|||+|+++|...+.++++.|+.++||+|.+...+ |+ ..+.++..+++ .+++
T Consensus 47 IDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~S---fe---ni~~W~~~I~e~a~~~v~- 119 (207)
T KOG0078|consen 47 IDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKS---FE---NIRNWIKNIDEHASDDVV- 119 (207)
T ss_pred EEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHH---HH---HHHHHHHHHHhhCCCCCc-
Confidence 3444444555554 46899999999999999999999999999999987542 33 33334444443 3677
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++|-||+|+.. +..--.+.-+.+...+| +.|+.+||++|.|+++.
T Consensus 120 ~~LvGNK~D~~~------~R~V~~e~ge~lA~e~G------~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 120 KILVGNKCDLEE------KRQVSKERGEALAREYG------IKFFETSAKTNFNIEEA 165 (207)
T ss_pred EEEeeccccccc------cccccHHHHHHHHHHhC------CeEEEccccCCCCHHHH
Confidence 789999999832 11122333444555655 47999999999999985
No 182
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.08 E-value=3.6e-10 Score=96.68 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=76.9
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCC
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVT 91 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~ 91 (383)
-|+......+..++..++++||||+.+|......+++.+|++++|+|+++... + ......+..+.. .++|
T Consensus 29 ~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s---~---~~~~~~l~~l~~~~~~~~~p 102 (167)
T cd04161 29 PTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDR---V---QEVKEILRELLQHPRVSGKP 102 (167)
T ss_pred CcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhH---H---HHHHHHHHHHHcCccccCCc
Confidence 34444445667788899999999999998888889999999999999987421 1 122333333322 3677
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHH--HHHHHhcCCCCCCCceEEEcccccc------ccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKM--TPFLKASGYNVKKDVQFLPISGLMG------LNMKT 149 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~iSa~~g------~~i~~ 149 (383)
+++++||+|++... + ..++.+.+ ..+.+..+ ..+.++++||++| .|+.+
T Consensus 103 -iliv~NK~Dl~~~~-~---~~~i~~~~~l~~~~~~~~----~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 103 -ILVLANKQDKKNAL-L---GADVIEYLSLEKLVNENK----SLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred -EEEEEeCCCCcCCC-C---HHHHHHhcCcccccCCCC----ceEEEEEeEceeCCCCccccCHHH
Confidence 89999999995432 1 11222221 11111111 1357899999998 67766
No 183
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.08 E-value=4.7e-10 Score=97.53 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=77.4
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH----HHcCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~----~~~~i~~ 92 (383)
|.......+..++.++.++||||+.++...+..++..+|++++|+|+++... + ....+.+..+ ...++|
T Consensus 48 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~---~---~~~~~~l~~l~~~~~~~~~p- 120 (184)
T smart00178 48 TQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKER---F---AESKRELDALLSDEELATVP- 120 (184)
T ss_pred ccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHH---H---HHHHHHHHHHHcChhhcCCC-
Confidence 3444445566678899999999999988888888999999999999987421 1 1222233222 124677
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHH--HH---hcCCCCCCCceEEEcccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPF--LK---ASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++++||+|++.. .+. +++.+.+.-. .. ..+. ....++++||++|+|+.+.
T Consensus 121 iliv~NK~Dl~~~-~~~---~~i~~~l~l~~~~~~~~~~~~---~~~~i~~~Sa~~~~g~~~~ 176 (184)
T smart00178 121 FLILGNKIDAPYA-ASE---DELRYALGLTNTTGSKGKVGV---RPLEVFMCSVVRRMGYGEG 176 (184)
T ss_pred EEEEEeCccccCC-CCH---HHHHHHcCCCcccccccccCC---ceeEEEEeecccCCChHHH
Confidence 8999999998432 122 2232222100 00 0011 2457999999999999984
No 184
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.08 E-value=1.1e-09 Score=93.33 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=70.4
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH------cCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~------~~i~~~ivviNK~D 101 (383)
....+.+|||||+++|......+++.+|++++|+|.+.... + .....++..++. .++| +++|.||+|
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 119 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS---L---EELKPIYELICEIKGNNIEKIP-IMLVGNKCD 119 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcCCCCCCC-EEEEEECcc
Confidence 44678899999999998777778889999999999987542 1 123334444443 3577 889999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 102 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+.... + . ..++...+.... .++++++||++|.|+.++.
T Consensus 120 l~~~~--~--v--~~~~~~~~~~~~------~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 120 ESHKR--E--V--SSNEGAACATEW------NCAFMETSAKTNHNVQELF 157 (165)
T ss_pred ccccC--e--e--cHHHHHHHHHHh------CCcEEEeecCCCCCHHHHH
Confidence 94211 0 0 011112222222 2479999999999999853
No 185
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.08 E-value=5.2e-10 Score=94.77 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=66.3
Q ss_pred EEeCCCC----CChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccH
Q 016750 34 ILDAPGH----KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 109 (383)
Q Consensus 34 liDtPG~----~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~ 109 (383)
+|||||. .++...+..++..+|++++|+|++.+.. ......+.. ..+.| +++++||+|++.. +
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~--~- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVSKR-QIAVISKTDMPDA--D- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCCCC-eEEEEEccccCcc--c-
Confidence 6999996 4567777788899999999999997642 122222221 23566 8899999999432 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 110 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. +.+.++++..++. .+++++||++|+|++++.
T Consensus 108 --~----~~~~~~~~~~~~~----~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 108 --V----AATRKLLLETGFE----EPIFELNSHDPQSVQQLV 139 (158)
T ss_pred --H----HHHHHHHHHcCCC----CCEEEEECCCccCHHHHH
Confidence 1 2234455555542 489999999999999953
No 186
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.08 E-value=3.7e-10 Score=98.70 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=70.3
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH------cCCCeEEEEEecCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDH 103 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~------~~i~~~ivviNK~D~~ 103 (383)
..+.||||||+++|.......++.+|++|+|+|.++..+ |+ ...+++..+.. .++| +|++.||+|+.
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~ 119 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRST---FE---RVERFREQIQRVKDESAADVP-IMIVGNKCDKV 119 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCC-EEEEEEChhcc
Confidence 457899999999998888888999999999999987542 11 22333333322 3466 88999999983
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. .+- ...+...+.+..+ ++++++||++|.|+.++.+
T Consensus 120 ~~--~~v----~~~~~~~~~~~~~------~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 120 YE--REV----STEEGAALARRLG------CEFIEASAKTNVNVERAFY 156 (190)
T ss_pred cc--Ccc----CHHHHHHHHHHhC------CEEEEecCCCCCCHHHHHH
Confidence 21 110 0111223334333 4799999999999999654
No 187
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.07 E-value=4.9e-10 Score=99.98 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=79.1
Q ss_pred HHHHhhcceeeccceeeeec---CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 9 EEERIKGKTVEVGRAHFETE---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 9 ~~E~~rG~Ti~~~~~~~~~~---~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.++...-++.|.....+..+ ...+.||||||++.|.......++.+|++|+|+|+++... |+ +..+++..+
T Consensus 26 ~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s---~~---~~~~w~~~l 99 (215)
T cd04109 26 GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS---FE---NLEDWYSMV 99 (215)
T ss_pred CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHH
Confidence 33334444445444444443 3578999999998888777778899999999999987532 21 223333444
Q ss_pred HHc------CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KTL------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~~------~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
... +.| +++|.||+|+... .+ ...++...+.+..+ .+++++||++|+|++++++
T Consensus 100 ~~~~~~~~~~~p-iilVgNK~DL~~~--~~----v~~~~~~~~~~~~~------~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 100 RKVLKSSETQPL-VVLVGNKTDLEHN--RT----VKDDKHARFAQANG------MESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred HHhccccCCCce-EEEEEECcccccc--cc----cCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 332 234 8899999999321 00 11122333444433 3688999999999999644
No 188
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.07 E-value=1.2e-09 Score=91.56 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=76.5
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHH--------HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~--------~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..|+|.+.....+.+++..+++|||||+.++.. .+...+..+|++++|+|++... +...+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------~~~~~~~ 101 (157)
T cd04164 32 IAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL----------DEEDLEI 101 (157)
T ss_pred CCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC----------CHHHHHH
Confidence 457888877777888888999999999877632 2445677999999999999743 2222223
Q ss_pred HH-HcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 85 AK-TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 85 ~~-~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.. ..+.| +++++||+|+.... .. .... ...+++++||.++.|+.++.
T Consensus 102 ~~~~~~~~-vi~v~nK~D~~~~~----~~---------~~~~------~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 102 LELPADKP-IIVVLNKSDLLPDS----EL---------LSLL------AGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred HHhhcCCC-EEEEEEchhcCCcc----cc---------cccc------CCCceEEEECCCCCCHHHHH
Confidence 33 44666 89999999993211 11 1111 13579999999999999843
No 189
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.07 E-value=5.7e-10 Score=93.49 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=78.2
Q ss_pred hcceeeccceeeee--cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---
Q 016750 14 KGKTVEVGRAHFET--ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--- 88 (383)
Q Consensus 14 rG~Ti~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--- 88 (383)
+..+.+.....+.. ....+.+||+||+..+.......++.+|++++|+|+++... + .....++..+...
T Consensus 31 ~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~ 104 (159)
T cd00154 31 STIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRES---F---ENLDKWLKELKEYAPE 104 (159)
T ss_pred CceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCC
Confidence 33333333334443 44678999999999999888889999999999999987431 1 1223344444443
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+.| +++++||+|+.. . .. ...+++..+.... ..+++.+|+++|.|+.++
T Consensus 105 ~~p-~ivv~nK~D~~~-~-~~----~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 105 NIP-IILVGNKIDLED-Q-RQ----VSTEEAQQFAKEN------GLLFFETSAKTGENVEEL 153 (159)
T ss_pred CCc-EEEEEEcccccc-c-cc----ccHHHHHHHHHHc------CCeEEEEecCCCCCHHHH
Confidence 366 899999999931 1 11 1223334444433 347999999999999984
No 190
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.07 E-value=5e-10 Score=106.99 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=83.9
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCCh--------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~--------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.|+|+|+...+++.+++.+.++||+|.++- +......+..||.+++|+|++.+.. .++...+. +
T Consensus 249 ~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~-------~~d~~~~~-~ 320 (454)
T COG0486 249 AGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD-------KEDLALIE-L 320 (454)
T ss_pred CCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------hhhHHHHH-h
Confidence 699999999999999999999999997643 4456678889999999999998753 35555555 3
Q ss_pred HHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
...+.| +++++||.|+.... . ...+ + . ....+++.+|+++|+|++.+.+
T Consensus 321 ~~~~~~-~i~v~NK~DL~~~~--~------~~~~----~-~----~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 321 LPKKKP-IIVVLNKADLVSKI--E------LESE----K-L----ANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred cccCCC-EEEEEechhccccc--c------cchh----h-c----cCCCceEEEEecCccCHHHHHH
Confidence 445666 88999999994321 1 0001 0 1 1134799999999999998543
No 191
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.07 E-value=6e-10 Score=109.92 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=79.4
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChH--------HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~--------~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
...|+|.|.....+.+++..++||||||++++. ..+...+..+|++++|+|++.+.. .+..+.+.
T Consensus 245 ~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s-------~~~~~~l~ 317 (449)
T PRK05291 245 DIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT-------EEDDEILE 317 (449)
T ss_pred CCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC-------hhHHHHHH
Confidence 356899999888889999999999999997653 224456789999999999987642 12233332
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. ..++| +++|+||+|+... . .. . ... ..+++++||++|.|++++.+
T Consensus 318 ~--~~~~p-iiiV~NK~DL~~~--~--~~-~---------~~~------~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 318 E--LKDKP-VIVVLNKADLTGE--I--DL-E---------EEN------GKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred h--cCCCC-cEEEEEhhhcccc--c--hh-h---------hcc------CCceEEEEeeCCCCHHHHHH
Confidence 2 34667 8899999999321 1 00 0 111 24789999999999998644
No 192
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.07 E-value=3.7e-10 Score=100.74 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=78.4
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCeE
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKL 93 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~~ 93 (383)
|+...+....+....+.||||||++.|.......++.+|++|+|+|+++..+ |+ .....+..+.. .++| +
T Consensus 31 Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S---f~---~l~~~~~~l~~~~~~~~p-i 103 (220)
T cd04126 31 TVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS---LE---ELEDRFLGLTDTANEDCL-F 103 (220)
T ss_pred ccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-E
Confidence 4433333344566789999999999998877778899999999999987532 11 12222322322 2466 8
Q ss_pred EEEEecCCCCCCCcc-------------HHHHHHHHHHHHHHHHhcCC--------CCCCCceEEEcccccccccccccc
Q 016750 94 LLVVNKMDDHTVNWS-------------KERYDEIESKMTPFLKASGY--------NVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 94 ivviNK~D~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
|+|.||+|+...+-. +....-..++...+.+..+- .+....+++++||++|.|+.+++.
T Consensus 104 IlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~ 183 (220)
T cd04126 104 AVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE 183 (220)
T ss_pred EEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence 999999999420000 00011112233334443320 011135799999999999999754
No 193
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.06 E-value=2.6e-10 Score=97.35 Aligned_cols=115 Identities=20% Similarity=0.153 Sum_probs=73.6
Q ss_pred eeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCe
Q 016750 18 VEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTK 92 (383)
Q Consensus 18 i~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~ 92 (383)
.+.....+.+++ ..+.+|||||+.+|.......++.+|++++|+|+..+.. ++ ....++..++. .++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~- 114 (169)
T cd04114 42 VDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYANNKVI- 114 (169)
T ss_pred eEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-
Confidence 344444455555 457889999999998888889999999999999987532 11 11223333332 3566
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++++||+|+... . .......+.+ .+.. ..+++++|+++|.|+.++.
T Consensus 115 ~i~v~NK~D~~~~--~-~i~~~~~~~~---~~~~------~~~~~~~Sa~~~~gv~~l~ 161 (169)
T cd04114 115 TILVGNKIDLAER--R-EVSQQRAEEF---SDAQ------DMYYLETSAKESDNVEKLF 161 (169)
T ss_pred EEEEEECcccccc--c-ccCHHHHHHH---HHHc------CCeEEEeeCCCCCCHHHHH
Confidence 7889999998321 1 1111112222 2211 2479999999999999853
No 194
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.06 E-value=8.3e-10 Score=94.41 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=71.4
Q ss_pred eeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHH------cCCCeEE
Q 016750 24 HFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT------LGVTKLL 94 (383)
Q Consensus 24 ~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~------~~i~~~i 94 (383)
.+.+++ ..+.+|||||+..|.......++.+|++|+++|+.++.. ++ ...... ..+.. .++| ++
T Consensus 41 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~i 113 (172)
T cd01862 41 EVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS---FE---SLDSWRDEFLIQASPSDPENFP-FV 113 (172)
T ss_pred EEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCccCCCCce-EE
Confidence 344444 456799999999998888888999999999999987532 11 111111 11222 1577 88
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 95 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 95 vviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++||+|+...+ . ...+++..+++..+ ..+++++|+.+|.|+.++.
T Consensus 114 lv~nK~Dl~~~~--~----~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 114 VLGNKIDLEEKR--Q----VSTKKAQQWCQSNG-----NIPYFETSAKEAINVEQAF 159 (172)
T ss_pred EEEECccccccc--c----cCHHHHHHHHHHcC-----CceEEEEECCCCCCHHHHH
Confidence 999999994211 0 11122333444443 2479999999999999854
No 195
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.06 E-value=2.5e-10 Score=94.69 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=63.1
Q ss_pred EEEeCCCCC----ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc
Q 016750 33 TILDAPGHK----SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 108 (383)
Q Consensus 33 ~liDtPG~~----~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~ 108 (383)
.+|||||+. .+.+.+...++.+|++++|+|++++.. .+..+++. ..+.| +++++||+|+... .
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s-------~~~~~~~~---~~~~p-~ilv~NK~Dl~~~--~ 104 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES-------RFPPGFAS---IFVKP-VIGLVTKIDLAEA--D 104 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc-------CCChhHHH---hccCC-eEEEEEeeccCCc--c
Confidence 689999973 345555566889999999999988753 22322222 23456 8889999998321 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
. ..++..++++..++ .+++++||++|.|++++
T Consensus 105 -~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 105 -V----DIERAKELLETAGA-----EPIFEISSVDEQGLEAL 136 (142)
T ss_pred -c----CHHHHHHHHHHcCC-----CcEEEEecCCCCCHHHH
Confidence 1 12233344444443 26899999999999884
No 196
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.06 E-value=8.1e-10 Score=94.67 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=77.2
Q ss_pred cCCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHH-HHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 5 MDTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~-~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
.+..+.+....++.+.....+..++ ..+.+|||||+++|... ....++.+|++++|+|++.+.. ++ ....+
T Consensus 24 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~ 97 (170)
T cd04115 24 AGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS---FH---SLPSW 97 (170)
T ss_pred hCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH---HH---hHHHH
Confidence 3444444444444444444555554 67899999999988654 4556789999999999987642 11 22333
Q ss_pred HHHHHHc----CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccc---ccccccc
Q 016750 82 VMLAKTL----GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM---GLNMKTR 150 (383)
Q Consensus 82 ~~~~~~~----~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~---g~~i~~~ 150 (383)
+..+... ++| ++++.||+|+.... + ...++...+.+.. ..+++++||++ +.|+.++
T Consensus 98 ~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~--~----~~~~~~~~~~~~~------~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 98 IEECEQHSLPNEVP-RILVGNKCDLREQI--Q----VPTDLAQRFADAH------SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred HHHHHHhcCCCCCC-EEEEEECccchhhc--C----CCHHHHHHHHHHc------CCcEEEEeccCCcCCCCHHHH
Confidence 3344432 477 89999999983211 0 0011222233332 24799999999 6666664
No 197
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.05 E-value=1.1e-09 Score=94.44 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=71.5
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
...+.||||||+++|.......++.+|++|+|+|.++... |+ ... .++..+... ++| +|+|.||+|+...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---f~---~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~ 120 (174)
T cd01871 48 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 120 (174)
T ss_pred EEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhccC
Confidence 3567899999999998777778889999999999987532 21 111 233333322 467 8999999999321
Q ss_pred CccHHHHHH------HHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
....++..+ ..++...+.+.++ ..+++++||++|.|++++.
T Consensus 121 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~f 167 (174)
T cd01871 121 KDTIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQKGLKTVF 167 (174)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEecccccCCHHHHH
Confidence 111111100 1222334444443 2479999999999999853
No 198
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.05 E-value=8e-10 Score=93.64 Aligned_cols=103 Identities=18% Similarity=0.126 Sum_probs=68.5
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~~ 105 (383)
..+.||||||+++|.......++.+|++++|+|.++... |+ ....++..+.. .++| ++++.||+|+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 121 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---FN---DLQDLREQILRVKDTENVP-MVLVGNKCDLEDE 121 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 456789999999998877778899999999999987432 11 22233333332 2577 8899999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.. ...++...+.+..+ .+++++||++|.|+.++.
T Consensus 122 --~~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 122 --RV----VSREEGQALARQWG------CPFYETSAKSKINVDEVF 155 (163)
T ss_pred --ce----ecHHHHHHHHHHcC------CeEEEecCCCCCCHHHHH
Confidence 11 01112222333332 479999999999999853
No 199
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.05 E-value=4.1e-10 Score=95.63 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=69.4
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~ 104 (383)
...+.+|||||+++|.......++.+|++++|+|++.... ++ ....+...+.. .++| ++++.||+|+..
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~ 119 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS---FE---EIKKFREQILRVKDRDDVP-IVLVGNKCDLES 119 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 3567899999999998888888999999999999987432 11 12222222222 2567 889999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.. . ...+....+.+..+ .+++++||++|.|++++.
T Consensus 120 ~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 120 ER--V----VSTEEGKELARQWG------CPFLETSAKERVNVDEAF 154 (164)
T ss_pred cc--e----EcHHHHHHHHHHcC------CEEEEeecCCCCCHHHHH
Confidence 11 0 01122233333332 479999999999999854
No 200
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.05 E-value=3.3e-09 Score=88.61 Aligned_cols=122 Identities=19% Similarity=0.189 Sum_probs=80.0
Q ss_pred Hhhcceeeccceeeeec-CcEEEEEeCCCCCChH-------HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 12 RIKGKTVEVGRAHFETE-TTRFTILDAPGHKSYV-------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~-~~~i~liDtPG~~~~~-------~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
..++.|.+.....+... ...+.||||||+.++. ..+...++.+|++++|+|+..... .....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~ 98 (163)
T cd00880 26 PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLE 98 (163)
T ss_pred CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHH
Confidence 44566766666666554 7799999999987663 344557789999999999998752 22222355
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.....++| +++++||+|+ ... .......+.... . .... ...+++++|+.++.|+.++
T Consensus 99 ~~~~~~~~-~ivv~nK~D~--~~~--~~~~~~~~~~~~-~-~~~~---~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 99 LLRERGKP-VLLVLNKIDL--LPE--EEEEELLELRLL-I-LLLL---LGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred HHHhcCCe-EEEEEEcccc--CCh--hhHHHHHHHHHh-h-cccc---cCCceEEEeeeccCCHHHH
Confidence 56667887 8899999999 321 111111110111 1 1111 2468999999999999884
No 201
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.05 E-value=8.2e-10 Score=97.29 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=75.6
Q ss_pred eccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEE
Q 016750 19 EVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLL 94 (383)
Q Consensus 19 ~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~i 94 (383)
+.....+..++ ..+.||||||++.|.......++.+|++++|+|+++... |+ ...+++..+... .+| ++
T Consensus 42 ~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~p-ii 114 (199)
T cd04110 42 DFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FV---NVKRWLQEIEQNCDDVC-KV 114 (199)
T ss_pred eeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EE
Confidence 33333444443 467899999999998888888899999999999987532 11 233344444332 356 88
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 95 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 95 vviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++||+|+.... . ...++...+.+..+ .+++++||++|.|+.++++
T Consensus 115 vVgNK~Dl~~~~--~----~~~~~~~~~~~~~~------~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 115 LVGNKNDDPERK--V----VETEDAYKFAGQMG------ISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEECccccccc--c----cCHHHHHHHHHHcC------CEEEEEECCCCcCHHHHHH
Confidence 999999994211 0 01122333444433 4799999999999999654
No 202
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.05 E-value=1.6e-09 Score=106.69 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=78.9
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCcc-ccccccCCchH----HH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEF-ETGFEKGGQTR----EH 81 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~-~~~~~~~~~~~----~~ 81 (383)
.++|++.....+.+++.+|+|+||||..+ +....++.+..+|++|+|||++.... ...+ .+.. +.
T Consensus 190 pfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~---~d~~~i~~EL 266 (500)
T PRK12296 190 PFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPL---SDIDALEAEL 266 (500)
T ss_pred CcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCch---hhHHHHHHHH
Confidence 57899988888888899999999999632 22345667788999999999974210 0000 0111 11
Q ss_pred HHHH----------HHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 82 VMLA----------KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 82 ~~~~----------~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.... ...+.| +|||+||+|++.. . +..+.+...++..+ ++++++||++++|+.++.
T Consensus 267 ~~y~~~l~~~~~~~~l~~kP-~IVVlNKiDL~da----~---el~e~l~~~l~~~g------~~Vf~ISA~tgeGLdEL~ 332 (500)
T PRK12296 267 AAYAPALDGDLGLGDLAERP-RLVVLNKIDVPDA----R---ELAEFVRPELEARG------WPVFEVSAASREGLRELS 332 (500)
T ss_pred HHhhhcccccchhhhhcCCC-EEEEEECccchhh----H---HHHHHHHHHHHHcC------CeEEEEECCCCCCHHHHH
Confidence 1111 123567 7899999999321 1 22223333344333 479999999999999965
Q ss_pred c
Q 016750 152 D 152 (383)
Q Consensus 152 ~ 152 (383)
.
T Consensus 333 ~ 333 (500)
T PRK12296 333 F 333 (500)
T ss_pred H
Confidence 4
No 203
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.04 E-value=5.5e-10 Score=98.29 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=71.3
Q ss_pred ceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEE
Q 016750 22 RAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLL 95 (383)
Q Consensus 22 ~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~iv 95 (383)
...+.+.+ ..++||||||+.+|......++..+|++|+|+|++++.. ++ ....++..+.. .++| +|+
T Consensus 37 ~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iil 109 (198)
T cd04147 37 RKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPES---FE---EVERLREEILEVKEDKFVP-IVV 109 (198)
T ss_pred eEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEE
Confidence 33455545 578899999999988776778899999999999987532 11 12222222222 4677 899
Q ss_pred EEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 96 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 96 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++||+|+.... .....+. ..+... ..+ ..+++++||++|.|+.++.+
T Consensus 110 v~NK~Dl~~~~-~~v~~~~----~~~~~~-~~~----~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 110 VGNKADSLEEE-RQVPAKD----ALSTVE-LDW----NCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred EEEcccccccc-ccccHHH----HHHHHH-hhc----CCcEEEecCCCCCCHHHHHH
Confidence 99999983211 1000111 111111 111 24789999999999998643
No 204
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.04 E-value=4.4e-09 Score=88.82 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=75.7
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCCh--------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL 88 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~--------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (383)
|.......+...+..+.+|||||+.+. .......+..+|++++|+|+..+.. ......+..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-------~~~~~~~~~~~~~ 110 (168)
T cd04163 38 TRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG-------EGDEFILELLKKS 110 (168)
T ss_pred eeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC-------chHHHHHHHHHHh
Confidence 333333334455678999999997653 2234556789999999999998631 3455566667777
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+.| +++++||+|+ .+ ......+..+.+ ....+ ..+++++|++++.|++++
T Consensus 111 ~~~-~iiv~nK~Dl--~~-~~~~~~~~~~~~---~~~~~-----~~~~~~~s~~~~~~~~~l 160 (168)
T cd04163 111 KTP-VILVLNKIDL--VK-DKEDLLPLLEKL---KELGP-----FAEIFPISALKGENVDEL 160 (168)
T ss_pred CCC-EEEEEEchhc--cc-cHHHHHHHHHHH---HhccC-----CCceEEEEeccCCChHHH
Confidence 788 8899999999 32 122222222222 22222 247999999999999984
No 205
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.04 E-value=8.1e-10 Score=95.26 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=69.7
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH-HHHHHHHc--CCCeEEEEEecCCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKTL--GVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~-~~~~~~~~--~i~~~ivviNK~D~~~~~ 106 (383)
..+.||||||+++|.......++.+|++|+|+|.++... |+ ...+ ++..++.. ++| +|++.||+|+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s---~~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~- 120 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCPKTP-FLLVGTQIDLRDD- 120 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhhhC-
Confidence 567899999999997766678889999999999987542 11 1222 33333322 566 8999999998321
Q ss_pred ccHHHHHHH---------HHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 107 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 107 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
....+.+ .++...+.+..+ ...++++||++|.|+.+++
T Consensus 121 --~~~~~~l~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SA~tg~~v~~~f 167 (175)
T cd01874 121 --PSTIEKLAKNKQKPITPETGEKLARDLK-----AVKYVECSALTQKGLKNVF 167 (175)
T ss_pred --hhhHHHhhhccCCCcCHHHHHHHHHHhC-----CcEEEEecCCCCCCHHHHH
Confidence 1111100 122223333333 2479999999999999854
No 206
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.04 E-value=8.5e-10 Score=96.27 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=77.8
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~ 92 (383)
|+......+++++..+.++||||+.++.......+..+|++++|+|+++... + ....+.+..+. ..+.|
T Consensus 50 T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p- 122 (190)
T cd00879 50 TLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER---F---QESKEELDSLLSDEELANVP- 122 (190)
T ss_pred ccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHcCccccCCC-
Confidence 4555556677788899999999999888777788899999999999986421 1 11222222221 23577
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCC----------CCCCCceEEEccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY----------NVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++++||+|+.... + .++ +...++.... ......+++++||++|+|++++.
T Consensus 123 vivv~NK~Dl~~~~-~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~ 183 (190)
T cd00879 123 FLILGNKIDLPGAV-S---EEE----LRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF 183 (190)
T ss_pred EEEEEeCCCCCCCc-C---HHH----HHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence 88999999984321 1 122 2333321111 00113579999999999999853
No 207
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.04 E-value=3e-09 Score=95.44 Aligned_cols=122 Identities=18% Similarity=0.239 Sum_probs=87.5
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~ 106 (383)
..+.+++|+||||+. ..++..+..+|++++|+|+..+.. .++.+.+..+...++|.+|+++||+|+ .+
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~-------~~~~~i~~~l~~~g~p~vi~VvnK~D~--~~ 147 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFE-------METFEFLNILQVHGFPRVMGVLTHLDL--FK 147 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCC-------HHHHHHHHHHHHcCCCeEEEEEecccc--CC
Confidence 468899999999863 677788899999999999998763 577788888888898866669999999 43
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccHHHHhhccCC
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 173 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~~~~ 173 (383)
....++.+.+++++.+..--+. ..+++++||++.-. .+|.++..++..++.+.+
T Consensus 148 -~~~~~~~~~~~l~~~~~~~~~~---~~ki~~iSa~~~~~---------~~~~e~~~~~r~i~~~~~ 201 (225)
T cd01882 148 -KNKTLRKTKKRLKHRFWTEVYQ---GAKLFYLSGIVHGR---------YPKTEIHNLARFISVMKF 201 (225)
T ss_pred -cHHHHHHHHHHHHHHHHHhhCC---CCcEEEEeeccCCC---------CCHHHHHHHHHHHHhCCC
Confidence 2344566666676643311112 35899999987532 345555567777776543
No 208
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.03 E-value=1.9e-09 Score=90.33 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=73.2
Q ss_pred eeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCeEEEEEe
Q 016750 23 AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVN 98 (383)
Q Consensus 23 ~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~~ivviN 98 (383)
..+...+..+.+|||||+.+|...+...+..+|++++|+|++.... + .+..+.+..+. ..++| +++++|
T Consensus 37 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~iiv~n 109 (159)
T cd04159 37 RKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGIP-LLVLGN 109 (159)
T ss_pred EEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEe
Confidence 4455667889999999999998888888999999999999986421 0 12223333222 24677 889999
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 99 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 99 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|+|+... ...+++.+.+. +.... ...++++++|+++|.|+.++
T Consensus 110 K~D~~~~----~~~~~~~~~~~--~~~~~---~~~~~~~~~Sa~~~~gi~~l 152 (159)
T cd04159 110 KNDLPGA----LSVDELIEQMN--LKSIT---DREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred CccccCC----cCHHHHHHHhC--ccccc---CCceEEEEEEeccCCChHHH
Confidence 9998321 11112211110 01111 12467899999999999984
No 209
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.03 E-value=7.4e-10 Score=94.16 Aligned_cols=109 Identities=20% Similarity=0.161 Sum_probs=71.5
Q ss_pred eeeec--CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCeEEEEE
Q 016750 24 HFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVV 97 (383)
Q Consensus 24 ~~~~~--~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~~ivvi 97 (383)
.+..+ ...+.+|||||+++|.......++.+|++++|+|.+.... |+ ...+++..+. ..++| ++++.
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~ 113 (164)
T cd04175 41 QVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVG 113 (164)
T ss_pred EEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEE
Confidence 34444 3456799999999999888888999999999999876432 11 1222333222 23577 89999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
||+|+.... .. ..++...+.+..+ .+++++||++|.|+.++.
T Consensus 114 nK~Dl~~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 114 NKCDLEDER--VV----GKEQGQNLARQWG------CAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCcchhcc--EE----cHHHHHHHHHHhC------CEEEEeeCCCCCCHHHHH
Confidence 999993211 00 0111223333333 479999999999999853
No 210
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.03 E-value=1.1e-09 Score=99.70 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=71.0
Q ss_pred eeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH------------cC
Q 016750 24 HFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------------LG 89 (383)
Q Consensus 24 ~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~------------~~ 89 (383)
.+..++ ..+.||||||+++|......++..+|++|+|+|.++... |+ ....++..+.. .+
T Consensus 40 ~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~S---f~---~i~~~~~~I~~~k~~~~~~~~~~~~ 113 (247)
T cd04143 40 LYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRES---FE---EVCRLREQILETKSCLKNKTKENVK 113 (247)
T ss_pred EEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhcccccccccCCC
Confidence 344444 677899999999987665667789999999999987532 22 12222223321 25
Q ss_pred CCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 90 VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 90 i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+| +|++.||+|+... .+ ...+++..++.... ...++++||++|.|++++.+
T Consensus 114 ~p-iIivgNK~Dl~~~--~~----v~~~ei~~~~~~~~-----~~~~~evSAktg~gI~elf~ 164 (247)
T cd04143 114 IP-MVICGNKADRDFP--RE----VQRDEVEQLVGGDE-----NCAYFEVSAKKNSNLDEMFR 164 (247)
T ss_pred Cc-EEEEEECccchhc--cc----cCHHHHHHHHHhcC-----CCEEEEEeCCCCCCHHHHHH
Confidence 66 8999999999321 11 11223333333211 34799999999999999543
No 211
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.03 E-value=1.2e-09 Score=80.04 Aligned_cols=68 Identities=32% Similarity=0.470 Sum_probs=61.7
Q ss_pred CeEEEEEEEEeEEecCCEEEEec--CCcE---EEEEEEEECCccceecCCCCeEEEEEecCCccC-ceeeEEEe
Q 016750 194 GTVVMGKVESGSVREGDSLLVMP--NKAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEED-ILSGFVLS 261 (383)
Q Consensus 194 G~vv~G~V~sG~l~~gd~v~i~p--~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~-i~~G~vl~ 261 (383)
|++++|||++|+|++||++.+.| .+.+ .+|++|+.++....++.+|+.+++.+...+.++ +++||+|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 68999999999999999999977 3344 899999999999999999999999999888888 89999986
No 212
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.03 E-value=7e-10 Score=105.82 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=75.4
Q ss_pred hhcceeeccceeeee-cCcEEEEEeCCCC-CCh-------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 13 IKGKTVEVGRAHFET-ETTRFTILDAPGH-KSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~-~~~~i~liDtPG~-~~~-------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
..|.|+|.....+.+ ++..+.||||||+ +++ .+.+...+..||++++|+|++++... .+...+..
T Consensus 219 ~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~------~~~~~~~~ 292 (351)
T TIGR03156 219 QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE------EQIEAVEK 292 (351)
T ss_pred CCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH------HHHHHHHH
Confidence 347899998888888 5789999999997 321 22344567899999999999876421 12222223
Q ss_pred HHHHc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 84 LAKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 84 ~~~~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.+... ++| +++|+||+|+ .+ +.... .... + ..+++++||++|.|++++
T Consensus 293 ~L~~l~~~~~p-iIlV~NK~Dl--~~--~~~v~-------~~~~--~-----~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 293 VLEELGAEDIP-QLLVYNKIDL--LD--EPRIE-------RLEE--G-----YPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred HHHHhccCCCC-EEEEEEeecC--CC--hHhHH-------HHHh--C-----CCCEEEEEccCCCCHHHH
Confidence 34433 566 8899999999 32 11111 1111 1 125899999999999984
No 213
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.03 E-value=1.2e-09 Score=92.66 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=68.8
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~~ 105 (383)
..+.||||||+++|.......++.+|++++|+|.++... |+ ...+++..+.. .++| ++++.||+|+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~ 121 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT---FQ---DIKPMRDQIVRVKGYEKVP-IILVGNKVDLESE 121 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccchhc
Confidence 457789999999998888888899999999999987531 11 22333333333 3677 8899999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.. . ...+...+.+..+ .+++++||++|.|+.++.
T Consensus 122 --~~--~--~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 122 --RE--V--SSAEGRALAEEWG------CPFMETSAKSKTMVNELF 155 (163)
T ss_pred --Cc--c--CHHHHHHHHHHhC------CEEEEecCCCCCCHHHHH
Confidence 10 0 0111222233332 378999999999999853
No 214
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.03 E-value=2.3e-09 Score=91.47 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=70.6
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHH--cCCCeEEEEEecCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~--~~i~~~ivviNK~D~~~ 104 (383)
.+..+++|||||+.++...+...+..+|++++|+|++++.. ++ +.. .++..++. .++| +++|+||+|+..
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~ 117 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---LE---RIRTKWLPLIRRLGVKVP-IILVGNKSDLRD 117 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhccc
Confidence 45678999999999888777778899999999999987542 11 111 22333433 2566 899999999943
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.. .. ....+++..+.+.+.- ..+++++||++|.|++++.
T Consensus 118 ~~--~~--~~~~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 118 GS--SQ--AGLEEEMLPIMNEFRE----IETCVECSAKTLINVSEVF 156 (166)
T ss_pred cc--ch--hHHHHHHHHHHHHHhc----ccEEEEeccccccCHHHHH
Confidence 21 10 0112222222222210 1279999999999999854
No 215
>PTZ00369 Ras-like protein; Provisional
Probab=99.03 E-value=1.2e-09 Score=95.44 Aligned_cols=105 Identities=21% Similarity=0.169 Sum_probs=70.5
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~ 104 (383)
...+.||||||+++|.......++.+|++++|+|+++... |+ ...+++..+.. .++| ++++.||+|+..
T Consensus 52 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~ 124 (189)
T PTZ00369 52 TCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS---FE---EIASFREQILRVKDKDRVP-MILVGNKCDLDS 124 (189)
T ss_pred EEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 4567899999999999888888999999999999987542 11 22333333322 2567 899999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. + .. .++...+.+..+ .+++++||++|.|+.++.+
T Consensus 125 ~~--~--i~--~~~~~~~~~~~~------~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 125 ER--Q--VS--TGEGQELAKSFG------IPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred cc--c--cC--HHHHHHHHHHhC------CEEEEeeCCCCCCHHHHHH
Confidence 11 0 00 111222333332 4799999999999998643
No 216
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.03 E-value=1.1e-09 Score=94.09 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=71.0
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCCCc
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNW 107 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~~~ 107 (383)
..+.+|||||+++|.......++.+|++|+|+|.++... |+ .....++..+... ++| +|++.||+|+...
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~-- 117 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPAS---FE--NVKEKWYPEVKHFCPNTP-IILVGTKLDLRED-- 117 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEecChhhhhC--
Confidence 458899999999987766677889999999999987431 11 0111123333332 677 9999999998321
Q ss_pred cHHHHHH---------HHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 108 SKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 108 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....+. ..++...+.+..+. .+++++||++|.|+.++.+
T Consensus 118 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf~ 165 (174)
T smart00174 118 -KSTLRELSKQKQEPVTYEQGEALAKRIGA-----VKYLECSALTQEGVREVFE 165 (174)
T ss_pred -hhhhhhhhcccCCCccHHHHHHHHHHcCC-----cEEEEecCCCCCCHHHHHH
Confidence 111111 12233445555543 3799999999999999643
No 217
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.02 E-value=5.5e-10 Score=94.93 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=75.0
Q ss_pred hhcceeeccceeeee--cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---
Q 016750 13 IKGKTVEVGRAHFET--ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--- 87 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--- 87 (383)
...++.+.....+.. ....++||||||+++|.......++.+|++|+|+|.++... ++ ....++..+..
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~~~~~~ 103 (168)
T cd04119 30 LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FE---ALDSWLKEMKQEGG 103 (168)
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcc
Confidence 333444433333333 34678899999999988777778889999999999987532 11 22223333322
Q ss_pred -----cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 -----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 -----~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+.| +++++||+|+.... . ...++...+.+..+ .+++++||++|.|+.++.
T Consensus 104 ~~~~~~~~p-iilv~nK~Dl~~~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 104 PHGNMENIV-VVVCANKIDLTKHR--A----VSEDEGRLWAESKG------FKYFETSACTGEGVNEMF 159 (168)
T ss_pred ccccCCCce-EEEEEEchhccccc--c----cCHHHHHHHHHHcC------CeEEEEECCCCCCHHHHH
Confidence 2455 89999999983100 0 01122222333333 479999999999999854
No 218
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.6e-09 Score=91.32 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=81.2
Q ss_pred cceeeccce--eeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc-C
Q 016750 15 GKTVEVGRA--HFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G 89 (383)
Q Consensus 15 G~Ti~~~~~--~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~-~ 89 (383)
+-||.+.+. .+...+ ..+.+|||+|+++|....-++++.+.+||+|.|.++--+ | .++..+++-++.. |
T Consensus 52 qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~S---f---e~t~kWi~dv~~e~g 125 (221)
T KOG0094|consen 52 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNS---F---ENTSKWIEDVRRERG 125 (221)
T ss_pred cceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccch---H---HHHHHHHHHHHhccC
Confidence 344444433 344444 467999999999999999999999999999999886432 3 3666677655544 3
Q ss_pred C--CeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 90 V--TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 90 i--~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
- ..+++|.||-|| .+ +.++ ..++-....+.++ +.|+.+||+.|.|+..+.
T Consensus 126 s~~viI~LVGnKtDL--~d--krqv--s~eEg~~kAkel~------a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 126 SDDVIIFLVGNKTDL--SD--KRQV--SIEEGERKAKELN------AEFIETSAKAGENVKQLF 177 (221)
T ss_pred CCceEEEEEcccccc--cc--hhhh--hHHHHHHHHHHhC------cEEEEecccCCCCHHHHH
Confidence 2 236677899999 53 2222 2222234445543 479999999999999853
No 219
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.01 E-value=1.4e-09 Score=93.53 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=70.7
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~~ 105 (383)
..+.||||||..+|......+++.+|++|+|+|.++... |+ ...+++..+.. .++| +++|.||+|+...
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S---f~---~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~ 122 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS---FQ---EASEFKKLITRVRLTEDIP-LVLVGNKVDLESQ 122 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhc
Confidence 568899999999998888888999999999999987542 22 22222233332 3577 8999999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+ . ..++...+.+..+ ++++++||++|.|++++++
T Consensus 123 --~~--v--~~~~~~~~a~~~~------~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 123 --RQ--V--TTEEGRNLAREFN------CPFFETSAALRHYIDDAFH 157 (172)
T ss_pred --Cc--c--CHHHHHHHHHHhC------CEEEEEecCCCCCHHHHHH
Confidence 00 0 1112233334433 4799999999999999643
No 220
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.01 E-value=1.3e-09 Score=95.32 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=72.2
Q ss_pred eeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecC
Q 016750 25 FETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKM 100 (383)
Q Consensus 25 ~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~ 100 (383)
+..++ ..+.+|||||+++|.......++.+|++++|+|.++... |+ ....++..+... ++| +++|+||+
T Consensus 43 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iilv~nK~ 115 (193)
T cd04118 43 MVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS---FE---RAKFWVKELQNLEEHCK-IYLCGTKS 115 (193)
T ss_pred EEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHhcCCCCC-EEEEEEcc
Confidence 44444 456799999998887666667789999999999987531 11 223344444443 577 89999999
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 101 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 101 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
|+.... +.......+++..+....+ .+++++||++|.|+.++.+
T Consensus 116 Dl~~~~--~~~~~v~~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 116 DLIEQD--RSLRQVDFHDVQDFADEIK------AQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred cccccc--cccCccCHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 983211 0000001123334444433 4689999999999998654
No 221
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.01 E-value=3.2e-09 Score=100.42 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=76.1
Q ss_pred cceeeccceeeeecC-cEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH
Q 016750 15 GKTVEVGRAHFETET-TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK 86 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~-~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~ 86 (383)
++|.+.....+++++ .+++|+||||+.+ +....++.+..+|++++|+|++....+..+ .+...+...+.
T Consensus 189 fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~---e~l~~l~~EL~ 265 (329)
T TIGR02729 189 FTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI---EDYEIIRNELK 265 (329)
T ss_pred CCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH---HHHHHHHHHHH
Confidence 577777777777776 8999999999742 344556667789999999999864100000 11222222222
Q ss_pred H-----cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 87 T-----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 87 ~-----~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. .+.| +++|+||+|+. + +...++..++ +.+..+ .+++++||++++|++++.
T Consensus 266 ~~~~~l~~kp-~IIV~NK~DL~--~--~~~~~~~~~~---l~~~~~------~~vi~iSAktg~GI~eL~ 321 (329)
T TIGR02729 266 KYSPELAEKP-RIVVLNKIDLL--D--EEELAELLKE---LKKALG------KPVFPISALTGEGLDELL 321 (329)
T ss_pred HhhhhhccCC-EEEEEeCccCC--C--hHHHHHHHHH---HHHHcC------CcEEEEEccCCcCHHHHH
Confidence 2 2566 88999999993 2 1222232222 222332 369999999999999853
No 222
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.00 E-value=8.9e-10 Score=95.02 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=73.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch-HHHHHHHHH--cCCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~-~~~~~~~~~--~~i~~~ivviNK~D~~~~ 105 (383)
..++.||||+|+++|.......++.+|++|||+|.++..+ |+ .. ..++..++. .++| +|+|.||+|+...
T Consensus 48 ~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~ 120 (176)
T cd04133 48 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS---YE---NVLKKWVPELRHYAPNVP-IVLVGTKLDLRDD 120 (176)
T ss_pred EEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhccC
Confidence 4667899999999998877788999999999999987542 22 11 233344433 2566 8999999998321
Q ss_pred Ccc----HHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWS----KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
... ........++...+.+..+. ..++.+||++|.|++++++
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F~ 166 (176)
T cd04133 121 KQYLADHPGASPITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 166 (176)
T ss_pred hhhhhhccCCCCCCHHHHHHHHHHcCC-----CEEEECCCCcccCHHHHHH
Confidence 000 00000112334445555442 2699999999999998643
No 223
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.00 E-value=3.3e-09 Score=103.08 Aligned_cols=119 Identities=22% Similarity=0.228 Sum_probs=77.0
Q ss_pred hcceeeccceeeeec-CcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFETE-TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~-~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.++|++.....+.++ +..|+|+||||..+ +....++.+..+|++++|||++.......+ .....+...+
T Consensus 189 pfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~---e~~~~i~~EL 265 (424)
T PRK12297 189 HFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI---EDYEKINKEL 265 (424)
T ss_pred CcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH---HHHHHHHHHH
Confidence 478888887777776 78999999999742 334456667789999999999753100000 1222233333
Q ss_pred HH-----cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KT-----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~-----~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. .++| +++|+||+|++.. .+. +..+.+.++ .+++++||++++|++++.+
T Consensus 266 ~~y~~~L~~kP-~IVV~NK~DL~~~---~e~-------l~~l~~~l~------~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 266 KLYNPRLLERP-QIVVANKMDLPEA---EEN-------LEEFKEKLG------PKVFPISALTGQGLDELLY 320 (424)
T ss_pred hhhchhccCCc-EEEEEeCCCCcCC---HHH-------HHHHHHHhC------CcEEEEeCCCCCCHHHHHH
Confidence 33 3667 7899999998321 111 222223322 2699999999999999654
No 224
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.00 E-value=1.5e-09 Score=91.93 Aligned_cols=105 Identities=23% Similarity=0.199 Sum_probs=70.4
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~~ivviNK~D~~~ 104 (383)
...+.+|||||+.++.......++.+|++++|+|...+.. +. ...+.+.... ..++| +++++||+|+..
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~ 119 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMES---FT---ATAEFREQILRVKDDDNVP-LLLVGNKCDLED 119 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEcccccc
Confidence 4578999999999999888889999999999999876431 11 1122222222 24677 899999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. + ....+...+.+..+ .+++++||++|.|+.++.+
T Consensus 120 ~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 120 KR--Q----VSSEEAANLARQWG------VPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred cc--c----cCHHHHHHHHHHhC------CeEEEeeCCCCCCHHHHHH
Confidence 10 0 01111222333333 3799999999999999543
No 225
>PLN03118 Rab family protein; Provisional
Probab=99.00 E-value=2e-09 Score=95.72 Aligned_cols=105 Identities=20% Similarity=0.187 Sum_probs=69.7
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHH----cCCCeEEEEEecCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT----LGVTKLLLVVNKMDDH 103 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~----~~i~~~ivviNK~D~~ 103 (383)
...+.||||||+++|.......++.+|++|+|+|+++... |+ ...+.+ ..+.. .+.| +++|+||+|+.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~---~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~ 133 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT---NLSDVWGKEVELYSTNQDCV-KMLVGNKVDRE 133 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 3578999999999998888888999999999999987532 11 111222 22222 2456 78899999994
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
... .. ..++...+.+..+ .+++++||++|.|++++.+
T Consensus 134 ~~~--~i----~~~~~~~~~~~~~------~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 134 SER--DV----SREEGMALAKEHG------CLFLECSAKTRENVEQCFE 170 (211)
T ss_pred ccC--cc----CHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 221 10 1122223333332 4799999999999999654
No 226
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.99 E-value=5.5e-09 Score=91.50 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=77.2
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCC----------ChHHHHHHhhh---hcCEEEEEEECCCCccccccccCCchH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHK----------SYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~----------~~~~~~~~~~~---~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
..|.|+++.+... +.++.||||||+. ++...+...++ .++++++|+|+..+.. ....
T Consensus 56 ~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~ 125 (196)
T PRK00454 56 TPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK-------ELDL 125 (196)
T ss_pred CCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC-------HHHH
Confidence 3466766554332 4789999999963 22222233333 4578999999887542 2334
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+.+..+...++| +++++||+|+ .+ ....+...+.+...+... ..+++|+||++|.|+.++.
T Consensus 126 ~i~~~l~~~~~~-~iiv~nK~Dl--~~--~~~~~~~~~~i~~~l~~~------~~~~~~~Sa~~~~gi~~l~ 186 (196)
T PRK00454 126 QMIEWLKEYGIP-VLIVLTKADK--LK--KGERKKQLKKVRKALKFG------DDEVILFSSLKKQGIDELR 186 (196)
T ss_pred HHHHHHHHcCCc-EEEEEECccc--CC--HHHHHHHHHHHHHHHHhc------CCceEEEEcCCCCCHHHHH
Confidence 556677778888 8899999998 42 233444455555555543 2478999999999999843
No 227
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.99 E-value=1.7e-09 Score=94.02 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=71.0
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH-HHHHHHH--cCCCeEEEEEecCCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~-~~~~~~~--~~i~~~ivviNK~D~~~~~ 106 (383)
..+.||||||+++|.......++.+|++++|+|.++... |+ .... ++..+.. .++| +|++.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 121 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS---LD---NVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDK 121 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCc
Confidence 467899999999998777778889999999999987532 11 1111 2222222 2577 89999999983211
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
........++...+.+..+. .+++++||++|.|+.++..
T Consensus 122 --~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 122 --NLDRKVTPAQAESVAKKQGA-----FAYLECSAKTMENVEEVFD 160 (187)
T ss_pred --cccCCcCHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHHH
Confidence 00000112234444555443 2789999999999999654
No 228
>PRK11058 GTPase HflX; Provisional
Probab=98.98 E-value=2.6e-09 Score=104.33 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=75.9
Q ss_pred hhcceeeccceeeeecCc-EEEEEeCCCCCCh--------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 13 IKGKTVEVGRAHFETETT-RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~-~i~liDtPG~~~~--------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
..|.|+|.....+.+.+. .+.|+||||+.+. ...+...+..||++|+|+|++++.+.... ....+.+.
T Consensus 227 ~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l---~~v~~iL~ 303 (426)
T PRK11058 227 QLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI---EAVNTVLE 303 (426)
T ss_pred CCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH---HHHHHHHH
Confidence 348899998888887664 8999999997432 22345567889999999999886421000 00123333
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+...++| +++|+||+|+ .+.... .. . . ...++. .++++||++|.|++++.+
T Consensus 304 el~~~~~p-vIiV~NKiDL--~~~~~~---~~-~---~--~~~~~~-----~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 304 EIDAHEIP-TLLVMNKIDM--LDDFEP---RI-D---R--DEENKP-----IRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred HhccCCCC-EEEEEEcccC--CCchhH---HH-H---H--HhcCCC-----ceEEEeCCCCCCHHHHHH
Confidence 33334677 8899999999 321110 11 1 0 111221 258899999999998543
No 229
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.98 E-value=2.5e-09 Score=90.76 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=69.1
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
....+.+|||||++.+...+...+..+|++++|+|.++... + ......+..+... ++| +++|+||+|+...
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 122 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS---F---ENCSRWVNKVRTASKHMP-GVLVGNKMDLADK 122 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccccc
Confidence 34688999999998888777788899999999999987532 1 1122333333333 577 8899999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. + ... .....+.... ..+++++||++|.|+.++.
T Consensus 123 ~--~--~~~--~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 156 (164)
T cd04101 123 A--E--VTD--AQAQAFAQAN------QLKFFKTSALRGVGYEEPF 156 (164)
T ss_pred c--C--CCH--HHHHHHHHHc------CCeEEEEeCCCCCChHHHH
Confidence 1 0 000 1111122222 2479999999999999853
No 230
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.98 E-value=2.3e-09 Score=91.53 Aligned_cols=103 Identities=14% Similarity=0.206 Sum_probs=68.4
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~~ 106 (383)
...+.+|||||+++|.......+..+|++|+|+|.+++.. ++ .....+..+... ++| ++++.||+|+....
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~ 120 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK 120 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhccccc
Confidence 4578899999999887666667789999999999987642 11 122233333322 577 89999999994211
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
...+...+.+.. ..+++++||++|.|++++.+
T Consensus 121 --------~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 121 --------VKAKQITFHRKK------NLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred --------CCHHHHHHHHHc------CCEEEEEeCCCCCChHHHHH
Confidence 001111222221 35799999999999999644
No 231
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.97 E-value=1.4e-09 Score=93.23 Aligned_cols=104 Identities=15% Similarity=0.100 Sum_probs=67.4
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-cCCCeEEEEEecCCCCCCCcc
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 108 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-~~i~~~ivviNK~D~~~~~~~ 108 (383)
..+.++||+|.+.+.......++.+|++++|+|+++... ++ ...+++..+.. .++| +++|+||+|+... .
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~--~ 124 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS---FS---YCAEVYKKYFMLGEIP-CLFVAAKADLDEQ--Q 124 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHhccCCCCe-EEEEEEccccccc--c
Confidence 567899999999887766777899999999999977421 11 11122222211 2577 8999999998321 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.. ...+..++.+.+++. .++++||++|.|++++.
T Consensus 125 -~~---~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 125 -QR---YEVQPDEFCRKLGLP-----PPLHFSSKLGDSSNELF 158 (169)
T ss_pred -cc---cccCHHHHHHHcCCC-----CCEEEEeccCccHHHHH
Confidence 00 111223334444432 46899999999999854
No 232
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.97 E-value=1e-09 Score=94.32 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=70.9
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH--cCCCeEEEEEecCCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--~~i~~~ivviNK~D~~~~~ 106 (383)
...+.+|||||+++|.......++.+|++|+|+|.++... |+ .....++..+.. .++| ++++.||+|+...
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s---f~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 119 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS---FQ--NISEKWIPEIRKHNPKAP-IILVGTQADLRTD- 119 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEeeChhhccC-
Confidence 3567899999999987776677889999999999987532 11 111223333433 2567 8999999998321
Q ss_pred ccHHHH---------HHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 107 WSKERY---------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 107 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. ... .-..++...+.+..+. .+++++||++|.|++++.
T Consensus 120 -~-~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~lf 166 (173)
T cd04130 120 -V-NVLIQLARYGEKPVSQSRAKALAEKIGA-----CEYIECSALTQKNLKEVF 166 (173)
T ss_pred -h-hHHHHHhhcCCCCcCHHHHHHHHHHhCC-----CeEEEEeCCCCCCHHHHH
Confidence 0 000 0011223344444442 379999999999999854
No 233
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.96 E-value=6.9e-09 Score=91.66 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=72.6
Q ss_pred hcceeeccceeeeecCc-EEEEEeCCCCCCh--------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 14 KGKTVEVGRAHFETETT-RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~-~i~liDtPG~~~~--------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
.+.|++.....+.+++. .++||||||+.+. ...+...+..+|++++|+|++.+... .+...+...
T Consensus 72 ~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~------~~~~~~~~~ 145 (204)
T cd01878 72 LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE------EQIETVEKV 145 (204)
T ss_pred cceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh------hHHHHHHHH
Confidence 35666666666666665 9999999998431 11223345689999999999876421 122233344
Q ss_pred HHHc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 85 AKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 85 ~~~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+... ++| +++|+||+|+ .+ ..... ..+... ..+++++||++|.|+.++.
T Consensus 146 l~~~~~~~~~-viiV~NK~Dl--~~--~~~~~-------~~~~~~------~~~~~~~Sa~~~~gi~~l~ 197 (204)
T cd01878 146 LKELGAEDIP-MILVLNKIDL--LD--DEELE-------ERLEAG------RPDAVFISAKTGEGLDELL 197 (204)
T ss_pred HHHcCcCCCC-EEEEEEcccc--CC--hHHHH-------HHhhcC------CCceEEEEcCCCCCHHHHH
Confidence 4433 466 8999999999 32 11111 112211 3479999999999999853
No 234
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.96 E-value=3.4e-09 Score=91.39 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=80.4
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~ 92 (383)
|+......+++++..++++|.+|+..+...+...+..+|++|+|||+++... + .+.++.+..+.. .++|
T Consensus 45 T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~---l---~e~~~~L~~ll~~~~~~~~p- 117 (175)
T PF00025_consen 45 TIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER---L---QEAKEELKELLNDPELKDIP- 117 (175)
T ss_dssp ESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG---H---HHHHHHHHHHHTSGGGTTSE-
T ss_pred ccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEeccccee---e---cccccchhhhcchhhcccce-
Confidence 3344455677789999999999999888888888999999999999987421 1 233433333221 2566
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++++||+|++.+- +. ++ +...+....+.....+.++++||.+|+|+.+.
T Consensus 118 iLIl~NK~D~~~~~-~~---~~----i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 118 ILILANKQDLPDAM-SE---EE----IKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp EEEEEESTTSTTSS-TH---HH----HHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred EEEEeccccccCcc-hh---hH----HHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence 88999999995432 11 22 22222221122123678999999999999884
No 235
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.96 E-value=2.5e-09 Score=95.59 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=78.5
Q ss_pred cCCCHHHHhhcceeeccceeeee--cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 5 MDTNEEERIKGKTVEVGRAHFET--ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
.+..+++....+..+.....+.. ....+.+|||||+++|.......++.+|++|+|+|.++... |+ ....++
T Consensus 35 ~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s---~~---~i~~w~ 108 (219)
T PLN03071 35 TGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWH 108 (219)
T ss_pred hCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHH---HH---HHHHHH
Confidence 34444443333333333333333 34688999999999998777777889999999999987542 11 222333
Q ss_pred HHHHH--cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 83 MLAKT--LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 83 ~~~~~--~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..+.. .++| +++|.||+|+....... +++ .+.+.. ..+++++||++|.|+.+++.
T Consensus 109 ~~i~~~~~~~p-iilvgNK~Dl~~~~v~~-------~~~-~~~~~~------~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 109 RDLCRVCENIP-IVLCGNKVDVKNRQVKA-------KQV-TFHRKK------NLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred HHHHHhCCCCc-EEEEEEchhhhhccCCH-------HHH-HHHHhc------CCEEEEcCCCCCCCHHHHHH
Confidence 33332 3577 88999999983211111 112 222222 34799999999999999643
No 236
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.96 E-value=2.5e-09 Score=91.00 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=66.6
Q ss_pred CcEEEEEeCCCCCC-hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-----cCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~-~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-----~~i~~~ivviNK~D~ 102 (383)
...+.+|||||+.+ +...+...++.+|++|+|+|+++... |+ ....++..+.. .++| +++|.||+|+
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 118 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD---EISQLKQLIREIKKRDREIP-VILVGNKADL 118 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECCch
Confidence 34578999999985 34456677889999999999987542 11 22223333332 2677 8899999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccc-ccccccc
Q 016750 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRV 151 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g-~~i~~~~ 151 (383)
.... . -..++...+.+..+ .+++++||++| .|++++.
T Consensus 119 ~~~~----~--v~~~~~~~~~~~~~------~~~~e~Sa~~~~~~v~~~f 156 (165)
T cd04146 119 LHYR----Q--VSTEEGEKLASELG------CLFFEVSAAEDYDGVHSVF 156 (165)
T ss_pred HHhC----c--cCHHHHHHHHHHcC------CEEEEeCCCCCchhHHHHH
Confidence 3110 0 01122233333333 37999999999 4898853
No 237
>PLN03110 Rab GTPase; Provisional
Probab=98.96 E-value=1.6e-09 Score=96.75 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=77.3
Q ss_pred hhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---
Q 016750 13 IKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--- 87 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--- 87 (383)
...+..+.....+..++ ..+.||||||+++|.......++.+|++|+|+|.++... |+ ....++..+..
T Consensus 42 ~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~ 115 (216)
T PLN03110 42 KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVQRWLRELRDHAD 115 (216)
T ss_pred CCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCC
Confidence 33344444444444443 578899999999998888888899999999999987532 11 22233333433
Q ss_pred cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 88 LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 88 ~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.++| ++++.||+|+.... . ...+ ....+.... ..+++++||++|.|++++.+
T Consensus 116 ~~~p-iiiv~nK~Dl~~~~--~-~~~~---~~~~l~~~~------~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 116 SNIV-IMMAGNKSDLNHLR--S-VAEE---DGQALAEKE------GLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred CCCe-EEEEEEChhccccc--C-CCHH---HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 3576 88999999983211 0 0011 122222222 34799999999999998654
No 238
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.96 E-value=1.8e-09 Score=92.25 Aligned_cols=104 Identities=18% Similarity=0.121 Sum_probs=69.4
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~~ivviNK~D~~~~ 105 (383)
..+.+|||||+++|.......++.+|++++|+|.++... ++ ....+...+. ..++| ++++.||+|+...
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~ 121 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS---LN---ELGELREQVLRIKDSDNVP-MVLVGNKADLEDD 121 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCC-EEEEEEChhcccc
Confidence 567899999999998888888899999999999987532 11 1122222222 23677 8889999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. . ...++...+.+..+ ..+++++||++|.|+.++.
T Consensus 122 ~--~----~~~~~~~~~~~~~~-----~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 122 R--Q----VSREDGVSLSQQWG-----NVPFYETSARKRTNVDEVF 156 (168)
T ss_pred C--c----cCHHHHHHHHHHcC-----CceEEEeeCCCCCCHHHHH
Confidence 1 1 11112222333333 2579999999999999853
No 239
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.95 E-value=7.5e-09 Score=90.55 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=71.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH-HHHHHHH--cCCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~-~~~~~~~--~~i~~~ivviNK~D~~~~ 105 (383)
...+.+|||||+++|.......++.+|++|+|+|.++..+ |+ .... +...+.. .++| +++|.||.|+...
T Consensus 50 ~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 122 (191)
T cd01875 50 TVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS---YE---NVRHKWHPEVCHHCPNVP-ILLVGTKKDLRND 122 (191)
T ss_pred EEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEeChhhhcC
Confidence 3567899999999998777778899999999999987542 22 1111 2222222 3577 8999999999321
Q ss_pred CccHHHHHH------HHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....+...+ ..++...+.+..+ ..+++++||++|+|+.+++.
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SAk~g~~v~e~f~ 170 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQIH-----AVKYLECSALNQDGVKEVFA 170 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCCHHHHHH
Confidence 100000000 0122333444443 24799999999999999643
No 240
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.95 E-value=1.5e-09 Score=91.72 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=68.7
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~~ivviNK~D~~~~ 105 (383)
...+.+|||||++.+.......++.+|++++|+|++++.. ++ +....+..+.. .++| +++++||+|+...
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~ 120 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADS---FQ---KVKKWIKELKQMRGNNIS-LVIVGNKIDLERQ 120 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccc
Confidence 3468999999998887777777889999999999987542 11 22222233322 2566 8899999998421
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. +. ..+++..+.+..+ .+++++|+++|.|++++.
T Consensus 121 ~--~~----~~~~~~~~~~~~~------~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 121 R--VV----SKSEAEEYAKSVG------AKHFETSAKTGKGIEELF 154 (162)
T ss_pred c--CC----CHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 1 10 1122333334333 468999999999999853
No 241
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.95 E-value=1.9e-09 Score=91.51 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=74.4
Q ss_pred cceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---C
Q 016750 15 GKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---G 89 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~ 89 (383)
.+..+.....+..++ ..+.+|||||.++|.......++.+|++++|+|.++... |+ ....++..+... +
T Consensus 32 t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~---~~~~~~~~~~~~~~~~ 105 (161)
T cd04117 32 TIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS---YQ---HIMKWVSDVDEYAPEG 105 (161)
T ss_pred ceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCC
Confidence 333333333444444 567899999999998888888899999999999887532 22 222233333222 4
Q ss_pred CCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 90 VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 90 i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+| ++++.||+|+.... .. ..++...+.+..+ .+++++||++|.|+.++
T Consensus 106 ~~-iilvgnK~Dl~~~~----~v--~~~~~~~~~~~~~------~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 106 VQ-KILIGNKADEEQKR----QV--GDEQGNKLAKEYG------MDFFETSACTNSNIKES 153 (161)
T ss_pred Ce-EEEEEECccccccc----CC--CHHHHHHHHHHcC------CEEEEEeCCCCCCHHHH
Confidence 56 88999999983211 00 0122223333332 47999999999999985
No 242
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.94 E-value=3.1e-09 Score=91.09 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=72.3
Q ss_pred eeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH----HHHHcCCCeEEEEEe
Q 016750 23 AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM----LAKTLGVTKLLLVVN 98 (383)
Q Consensus 23 ~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~----~~~~~~i~~~ivviN 98 (383)
..+++++..+.+|||||+.++...+...++.+|++++|+|+..... + ......+. .....++| +++++|
T Consensus 51 ~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ivv~n 123 (173)
T cd04155 51 KTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKR---L---EEAGAELVELLEEEKLAGVP-VLVFAN 123 (173)
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEE
Confidence 3556678899999999999888777788899999999999986321 1 11222222 22234677 889999
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 99 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 99 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|+|+.... ..+++.+ .+....+. ....+++++||++|+|++++
T Consensus 124 K~D~~~~~----~~~~i~~----~l~~~~~~-~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 124 KQDLATAA----PAEEIAE----ALNLHDLR-DRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred CCCCccCC----CHHHHHH----HcCCcccC-CCeEEEEEeECCCCCCHHHH
Confidence 99983211 1122222 22111111 11346889999999999984
No 243
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.93 E-value=1.7e-09 Score=92.79 Aligned_cols=110 Identities=19% Similarity=0.153 Sum_probs=70.1
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHH--cCCCeEEEEEecCCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~--~~i~~~ivviNK~D~~~~~ 106 (383)
..+.+|||||+.+|.......++.+|++++|+|..+... |+ ... ..+..+.. .++| ++++.||+|+....
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~ 120 (174)
T cd04135 48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ---NVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDP 120 (174)
T ss_pred EEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeEchhhhcCh
Confidence 457899999999987766677889999999999987532 11 111 12233332 3677 88999999983221
Q ss_pred ccHHHH------HHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 107 WSKERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 107 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
...... .-..++...+.+.++. .+++++||++|.|++++.
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~f 166 (174)
T cd04135 121 KTLARLNDMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTVF 166 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHHH
Confidence 000000 0012334445555553 379999999999999954
No 244
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.93 E-value=1.5e-09 Score=96.54 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=69.7
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc----CCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~----~i~~~ivviNK~D~~~~ 105 (383)
..+.+|||||++.|.......++.+|++++|+|.++..+ |+ ...+++..+... ..+ ++++.||+|+...
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S---f~---~l~~~~~~i~~~~~~~~~~-iilvgNK~Dl~~~ 124 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES---FE---HVHDWLEEARSHIQPHRPV-FILVGHKCDLESQ 124 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCe-EEEEEEccccccc
Confidence 578899999999998877788899999999999987532 21 222333333221 234 7889999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. + ...++...+.+..+ .+++++||++|.|+.++.+
T Consensus 125 ~--~----v~~~~~~~~~~~~~------~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 125 R--Q----VTREEAEKLAKDLG------MKYIETSARTGDNVEEAFE 159 (211)
T ss_pred c--c----cCHHHHHHHHHHhC------CEEEEEeCCCCCCHHHHHH
Confidence 0 0 11122333444433 4799999999999999654
No 245
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.93 E-value=7.7e-09 Score=101.57 Aligned_cols=112 Identities=23% Similarity=0.256 Sum_probs=78.0
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHH--------HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~--------~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..|+|.|.....+.+++..+.+|||||++++.. .+..+++.+|++++|+|++.+.. .+.. .+..
T Consensus 234 ~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~ 305 (442)
T TIGR00450 234 IKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIID 305 (442)
T ss_pred CCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHH
Confidence 368999998888999999999999999865432 23567789999999999987642 1222 4455
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+...++| +|+|+||+|+ .+. .. ..+.+..+ .+++++||++ .|+.+..+
T Consensus 306 ~~~~~~p-iIlV~NK~Dl--~~~---~~-------~~~~~~~~------~~~~~vSak~-~gI~~~~~ 353 (442)
T TIGR00450 306 LNKSKKP-FILVLNKIDL--KIN---SL-------EFFVSSKV------LNSSNLSAKQ-LKIKALVD 353 (442)
T ss_pred HhhCCCC-EEEEEECccC--CCc---ch-------hhhhhhcC------CceEEEEEec-CCHHHHHH
Confidence 5555777 8899999999 321 11 11122222 3688999998 57766543
No 246
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.93 E-value=4.3e-09 Score=91.92 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=70.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
...+.||||||+++|.......++.+|++++|+|.++... |+ ... .++..+... +.| +++|.||+|+...
T Consensus 47 ~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s---f~---~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~ 119 (189)
T cd04134 47 HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS---LE---NVESKWLGEIREHCPGVK-LVLVALKCDLREA 119 (189)
T ss_pred EEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccC
Confidence 3578999999999886665667789999999999987542 11 111 233334332 567 8999999999432
Q ss_pred CccHHHHH------HHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
........ -..++...+.+..+ .++++++||++|.|+++++.
T Consensus 120 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~v~e~f~ 167 (189)
T cd04134 120 RNERDDLQRYGKHTISYEEGLAVAKRIN-----ALRYLECSAKLNRGVNEAFT 167 (189)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC-----CCEEEEccCCcCCCHHHHHH
Confidence 10000000 00122233344333 24799999999999999643
No 247
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.93 E-value=1.2e-08 Score=75.59 Aligned_cols=78 Identities=33% Similarity=0.454 Sum_probs=67.8
Q ss_pred eeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEec--CCcEEEEEEEEECCccceecCCCCeEEEEEecCCccCceee
Q 016750 182 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMP--NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257 (383)
Q Consensus 182 ~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p--~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G 257 (383)
+++.|.++++ ..|.+++|+|.+|+|++||.+.+.| .....+|++|+.++.+++++.||+.+++.+... .+++.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~--~~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDK--DDIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEccc--cccCCC
Confidence 3577888874 4789999999999999999999999 778889999999999999999999999877633 378899
Q ss_pred EEEe
Q 016750 258 FVLS 261 (383)
Q Consensus 258 ~vl~ 261 (383)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9885
No 248
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.91 E-value=2.9e-09 Score=92.82 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=69.6
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivviNK~D~~~~ 105 (383)
...+.+|||||+++|.......++.+|++|+|+|.++... |+ ....++..+... .+| ++++.||+|+...
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~ 120 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQES---FE---NLKFWINEINRYARENVI-KVIVANKSDLVNN 120 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECCCCccc
Confidence 3567899999999998888888999999999999987532 11 222333333332 355 8899999998321
Q ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. .+. +....+....+ ++++++||++|.|+++++.
T Consensus 121 ~~v~~-------~~~~~~~~~~~------~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 121 KVVDS-------NIAKSFCDSLN------IPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ccCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 1 011 11122333333 3799999999999998654
No 249
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.89 E-value=6.4e-09 Score=93.43 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=73.4
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~~ 106 (383)
...+.||||||.++|......+++.+|++|+|+|.++..+ |+ .-...++..+... ++| +|+|.||+|+...
T Consensus 60 ~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S---f~--~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~- 132 (232)
T cd04174 60 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWKAEIMDYCPSTR-ILLIGCKTDLRTD- 132 (232)
T ss_pred EEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEECcccccc-
Confidence 4568899999999998877788999999999999987542 11 0012233334332 566 8899999998321
Q ss_pred ccH------H-HHHHHHHHHHHHHHhcCCCCCCCceEEEccccccc-ccccccc
Q 016750 107 WSK------E-RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 152 (383)
Q Consensus 107 ~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~-~i~~~~~ 152 (383)
... . ...-..++...+.+..++. .++.+||++|+ |+++++.
T Consensus 133 ~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~-----~~~EtSAktg~~~V~e~F~ 181 (232)
T cd04174 133 LSTLMELSNQKQAPISYEQGCALAKQLGAE-----VYLECSAFTSEKSIHSIFR 181 (232)
T ss_pred cchhhhhccccCCcCCHHHHHHHHHHcCCC-----EEEEccCCcCCcCHHHHHH
Confidence 000 0 0001123455566666532 68999999998 7998654
No 250
>PLN03108 Rab family protein; Provisional
Probab=98.88 E-value=5.4e-09 Score=92.87 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=69.8
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCeEEEEEecCCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~~ivviNK~D~~~~~ 106 (383)
..+.+|||||++.|.......++.+|++++|+|++.... |+ ...+++..+.. .++| ++++.||+|+....
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s---~~---~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~ 127 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLASWLEDARQHANANMT-IMLIGNKCDLAHRR 127 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccCcccc
Confidence 457899999999998888888899999999999987532 11 12222332222 2566 88999999983211
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. ...++...+.+..+ ++++++||+++.|+.+++
T Consensus 128 --~----~~~~~~~~~~~~~~------~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 128 --A----VSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAF 160 (210)
T ss_pred --C----CCHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 0 11122333444443 479999999999999854
No 251
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.3e-09 Score=87.43 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=76.3
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 108 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~ 108 (383)
...+++|||+|++.|..-+-..++.|++.||+.|.++... |..-..+...+......+++ +|+|.||+|+..
T Consensus 69 RiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeS---f~svqdw~tqIktysw~naq-vilvgnKCDmd~---- 140 (193)
T KOG0093|consen 69 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDS---- 140 (193)
T ss_pred EEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHH---HHHHHHHHHHheeeeccCce-EEEEecccCCcc----
Confidence 3567999999999998888889999999999999987542 22001111222222345777 999999999832
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+|. -..+..+.+...+|| .++..||+.+.|+.++.+
T Consensus 141 -eRv-is~e~g~~l~~~LGf------efFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 141 -ERV-ISHERGRQLADQLGF------EFFETSAKENINVKQVFE 176 (193)
T ss_pred -cee-eeHHHHHHHHHHhCh------HHhhhcccccccHHHHHH
Confidence 221 223445566777776 599999999999998654
No 252
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.87 E-value=2.9e-08 Score=85.13 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=82.5
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCC----------ChHHHHHHhhh---hcCEEEEEEECCCCccccccccCCch
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHK----------SYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQT 78 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~----------~~~~~~~~~~~---~ad~~ilvvda~~g~~~~~~~~~~~~ 78 (383)
+..|.|..+.+..+ ++. +.|+|.||+- .+-..+..++. .-..+++++|+..++. ..+
T Consensus 55 ktPGrTq~iNff~~--~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~-------~~D 124 (200)
T COG0218 55 KTPGRTQLINFFEV--DDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK-------DLD 124 (200)
T ss_pred CCCCccceeEEEEe--cCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc-------HHH
Confidence 45689988887444 332 8899999963 12223333433 5688999999999874 468
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 79 REHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 79 ~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
++.++++...++| ++|++||+|. ++ +.........+.+.+. +.+.....++..|+.++.|++++.
T Consensus 125 ~em~~~l~~~~i~-~~vv~tK~DK--i~--~~~~~k~l~~v~~~l~---~~~~~~~~~~~~ss~~k~Gi~~l~ 189 (200)
T COG0218 125 REMIEFLLELGIP-VIVVLTKADK--LK--KSERNKQLNKVAEELK---KPPPDDQWVVLFSSLKKKGIDELK 189 (200)
T ss_pred HHHHHHHHHcCCC-eEEEEEcccc--CC--hhHHHHHHHHHHHHhc---CCCCccceEEEEecccccCHHHHH
Confidence 8999999999999 8899999999 53 2333344444443332 221112227888999999988843
No 253
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.87 E-value=8.5e-09 Score=88.02 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=70.6
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~~ 106 (383)
...+.+|||||+++|.......++.+|++++|+|+++... +. ....+++..+... ++| +++++||+|+....
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 120 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSS---FE--NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDE 120 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhch
Confidence 4568999999999886655566789999999999987431 11 1122233333333 477 89999999984321
Q ss_pred ccHHHHH--------HHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 107 WSKERYD--------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 107 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.... -..++...+....+. .+++++|+++|.|+.++
T Consensus 121 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 164 (171)
T cd00157 121 ---NTLKKLEKGKEPITPEEGEKLAKEIGA-----IGYMECSALTQEGVKEV 164 (171)
T ss_pred ---hhhhhcccCCCccCHHHHHHHHHHhCC-----eEEEEeecCCCCCHHHH
Confidence 1100 012334444555442 37999999999999984
No 254
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.86 E-value=1e-08 Score=102.20 Aligned_cols=115 Identities=21% Similarity=0.266 Sum_probs=85.0
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCChHH------HHHHhh--hhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYVP------NMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~------~~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.|+|++.....+++.++.+.++|.||...+.. -+...+ ..+|+++-|+||++= ......-.++
T Consensus 34 pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL---------eRnLyltlQL 104 (653)
T COG0370 34 PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL---------ERNLYLTLQL 104 (653)
T ss_pred CCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH---------HHHHHHHHHH
Confidence 48999999999999999999999999765521 122233 268999999999863 2444455677
Q ss_pred HHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 86 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 86 ~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.++|+| +|+++|++|. + +...+.-....+-+.+| +|++|+||++|.|++++.
T Consensus 105 lE~g~p-~ilaLNm~D~--A-----~~~Gi~ID~~~L~~~LG------vPVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 105 LELGIP-MILALNMIDE--A-----KKRGIRIDIEKLSKLLG------VPVVPTVAKRGEGLEELK 156 (653)
T ss_pred HHcCCC-eEEEeccHhh--H-----HhcCCcccHHHHHHHhC------CCEEEEEeecCCCHHHHH
Confidence 889999 9999999998 3 12223333344445555 589999999999999853
No 255
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.85 E-value=1.3e-08 Score=88.28 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=72.1
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch-HHHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~-~~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
...+.||||+|.++|.......++.+|++|+|+|.++... |+ .. ..++..++.. +.| +|+|.||+|+...
T Consensus 52 ~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~ 124 (182)
T cd04172 52 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD 124 (182)
T ss_pred EEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEeEChhhhcC
Confidence 3568899999999998777778899999999999987532 21 11 2233333332 466 8899999998321
Q ss_pred CccH------HH-HHHHHHHHHHHHHhcCCCCCCCceEEEcccccccc-ccccc
Q 016750 106 NWSK------ER-YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 151 (383)
Q Consensus 106 ~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~-i~~~~ 151 (383)
... .+ ..-..++..++.+..+. .+++.+||++|.| +.+++
T Consensus 125 -~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~F 172 (182)
T cd04172 125 -LTTLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIF 172 (182)
T ss_pred -hhhHHHHHhcCCCCCCHHHHHHHHHHcCC-----CEEEECCcCCCCCCHHHHH
Confidence 000 00 00112345556666552 3799999999998 99854
No 256
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.85 E-value=1.2e-08 Score=85.82 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=71.1
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~ 104 (383)
...+.+||+||+.++.......+..+|++++|+|.+.... + .+....+..+.. .+.| +++++||+|+..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 118 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES---F---EEIKGYREQILRVKDDEDIP-IVLVGNKCDLEN 118 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEECCcccc
Confidence 4678999999999988888888899999999999987532 1 122333333322 2566 899999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. .. ...+.+..+.+..+ .+++++|+++|.|+.++.
T Consensus 119 ~--~~----~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 119 E--RQ----VSKEEGKALAKEWG------CPFIETSAKDNINIDEVF 153 (160)
T ss_pred c--ce----ecHHHHHHHHHHcC------CcEEEeccCCCCCHHHHH
Confidence 1 11 11233444444433 379999999999999853
No 257
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.85 E-value=3.7e-08 Score=83.35 Aligned_cols=119 Identities=22% Similarity=0.257 Sum_probs=76.1
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCCh----------HHHHH---HhhhhcCEEEEEEECCCCccccccccCCchH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSY----------VPNMI---SGASQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~----------~~~~~---~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
..|.|.+...... + ..+.++||||+... ...+. ......+.+++++|...... ....
T Consensus 31 ~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~ 100 (170)
T cd01876 31 TPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT-------EIDL 100 (170)
T ss_pred CCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC-------HhHH
Confidence 3455554433222 2 38999999997542 22222 22335688999999987542 3455
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+.+..+...+.| +++++||+|+ .. ..........+...++... ...+++++|++++.|+.++
T Consensus 101 ~~~~~l~~~~~~-vi~v~nK~D~--~~--~~~~~~~~~~~~~~l~~~~----~~~~~~~~Sa~~~~~~~~l 162 (170)
T cd01876 101 EMLDWLEELGIP-FLVVLTKADK--LK--KSELAKALKEIKKELKLFE----IDPPIILFSSLKGQGIDEL 162 (170)
T ss_pred HHHHHHHHcCCC-EEEEEEchhc--CC--hHHHHHHHHHHHHHHHhcc----CCCceEEEecCCCCCHHHH
Confidence 667788888888 8899999998 32 2333344444444444211 1357999999999999884
No 258
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=7e-09 Score=83.37 Aligned_cols=118 Identities=21% Similarity=0.201 Sum_probs=78.3
Q ss_pred cceeeccce----eeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---
Q 016750 15 GKTVEVGRA----HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--- 87 (383)
Q Consensus 15 G~Ti~~~~~----~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--- 87 (383)
|.||.+.+. .++-++.++.+|||+|+++|.+-+.++.+.|++.|||.|.+..+. |+ -.-+++..+..
T Consensus 37 gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqps---fd---clpewlreie~yan 110 (213)
T KOG0095|consen 37 GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPS---FD---CLPEWLREIEQYAN 110 (213)
T ss_pred CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcc---hh---hhHHHHHHHHHHhh
Confidence 455555443 334456778999999999999999999999999999999986542 33 22334443333
Q ss_pred cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 ~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..+- -|+|-||+|+ .+ ..++-+++.+-+.... +.-|+..||+..+|++.+.
T Consensus 111 ~kvl-kilvgnk~d~--~d-----rrevp~qigeefs~~q-----dmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 111 NKVL-KILVGNKIDL--AD-----RREVPQQIGEEFSEAQ-----DMYFLETSAKEADNVEKLF 161 (213)
T ss_pred cceE-EEeeccccch--hh-----hhhhhHHHHHHHHHhh-----hhhhhhhcccchhhHHHHH
Confidence 2332 4688999999 42 1233333333332221 2357889999999999864
No 259
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.82 E-value=5.9e-09 Score=90.14 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=71.1
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch-HHHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~-~~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
...+.+|||||+++|.......++.+|++|+|+|.++..+ |+ .. ..++..++.. ++| +|+|.||+|+...
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S---f~---~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~ 120 (178)
T cd04131 48 RIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET---LD---SVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTD 120 (178)
T ss_pred EEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHHCCCCC-EEEEEEChhhhcC
Confidence 3567899999999987777778889999999999987542 21 11 2333334332 466 8899999998321
Q ss_pred CccH-----HHH-HHHHHHHHHHHHhcCCCCCCCceEEEcccccccc-ccccc
Q 016750 106 NWSK-----ERY-DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 151 (383)
Q Consensus 106 ~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~-i~~~~ 151 (383)
.... .+. .-..++..++.+..+. .+++.+||++|+| +.++.
T Consensus 121 ~~~~~~~~~~~~~~v~~~e~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~F 168 (178)
T cd04131 121 LSTLMELSHQRQAPVSYEQGCAIAKQLGA-----EIYLECSAFTSEKSVRDIF 168 (178)
T ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHHhCC-----CEEEECccCcCCcCHHHHH
Confidence 0000 000 0112344455555553 2799999999995 98854
No 260
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=6e-09 Score=89.07 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=81.7
Q ss_pred CHHHHhhcceeeccceeeeecCc--EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 8 NEEERIKGKTVEVGRAHFETETT--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 8 ~~~E~~rG~Ti~~~~~~~~~~~~--~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
+-.|.+--|-++.....+..+++ +.+||||+|+++|..-+-++.+.|-+|+||.|.+...+ |+ ...++|..+
T Consensus 39 F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~T---fe---nv~rWL~EL 112 (222)
T KOG0087|consen 39 FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQT---FE---NVERWLKEL 112 (222)
T ss_pred cCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHH---HH---HHHHHHHHH
Confidence 33344433444444444555554 45899999999999888888999999999999987542 21 333444555
Q ss_pred HHc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+.. +++ +++|.||+||... ..--.++.+.+.+.- ...|+.+||+.+.|+++..+
T Consensus 113 Rdhad~niv-imLvGNK~DL~~l------raV~te~~k~~Ae~~------~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 113 RDHADSNIV-IMLVGNKSDLNHL------RAVPTEDGKAFAEKE------GLFFLETSALDATNVEKAFE 169 (222)
T ss_pred HhcCCCCeE-EEEeecchhhhhc------cccchhhhHhHHHhc------CceEEEecccccccHHHHHH
Confidence 543 465 8889999999221 111122333333332 34799999999999998643
No 261
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.81 E-value=1.6e-08 Score=86.75 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=68.6
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH-HHHHHHH--cCCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~-~~~~~~~--~~i~~~ivviNK~D~~~~ 105 (383)
...+.+|||||+++|.......+..+|++++|+|.+.... |+ ...+ .+..++. .++| ++++.||+|+...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 120 (175)
T cd01870 48 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 120 (175)
T ss_pred EEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeeChhcccC
Confidence 3467899999999887766667889999999999986421 11 1111 2222332 2677 8999999998432
Q ss_pred CccHHHHH------HHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
........ ...++...+.+..+ ..+++++||++|.|++++.
T Consensus 121 ~~~~~~i~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~lf 167 (175)
T cd01870 121 EHTRRELAKMKQEPVKPEEGRDMANKIG-----AFGYMECSAKTKEGVREVF 167 (175)
T ss_pred hhhhhhhhhccCCCccHHHHHHHHHHcC-----CcEEEEeccccCcCHHHHH
Confidence 11000000 00122333344433 2479999999999999854
No 262
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.81 E-value=1.9e-08 Score=89.80 Aligned_cols=109 Identities=14% Similarity=0.123 Sum_probs=70.9
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHH--cCCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT--LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~--~~i~~~ivviNK~D~~~~ 105 (383)
...+.||||+|++.|......+++.+|++|+|+|.++... |+ .....| ..+.. .++| +|+|.||+|+.
T Consensus 48 ~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~S---f~---~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~-- 118 (222)
T cd04173 48 RIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPET---LD---SVLKKWQGETQEFCPNAK-VVLVGCKLDMR-- 118 (222)
T ss_pred EEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEECcccc--
Confidence 3467889999999998877788899999999999987532 11 111222 22222 3567 89999999983
Q ss_pred CccHHHHHH---------HHHHHHHHHHhcCCCCCCCceEEEcccccccc-cccccc
Q 016750 106 NWSKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~-i~~~~~ 152 (383)
+. ...... ..++...+.+.++. .+++.+||+++.| +.++++
T Consensus 119 ~~-~~~~~~~~~~~~~pIs~e~g~~~ak~~~~-----~~y~E~SAk~~~~~V~~~F~ 169 (222)
T cd04173 119 TD-LATLRELSKQRLIPVTHEQGTVLAKQVGA-----VSYVECSSRSSERSVRDVFH 169 (222)
T ss_pred cc-hhhhhhhhhccCCccCHHHHHHHHHHcCC-----CEEEEcCCCcCCcCHHHHHH
Confidence 21 111111 11234444555542 3799999999985 988643
No 263
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.3e-09 Score=85.60 Aligned_cols=123 Identities=23% Similarity=0.279 Sum_probs=80.5
Q ss_pred HHHhhcceeeccceeeeec--CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH
Q 016750 10 EERIKGKTVEVGRAHFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT 87 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~ 87 (383)
..-.+-+-++.+...++.. ..++++|||+|+++|.+-+.++.+.|-.|+||.|++.... |+ ....++.-++.
T Consensus 36 DdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrds---fn---aLtnWL~DaR~ 109 (214)
T KOG0086|consen 36 DDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDS---FN---ALTNWLTDART 109 (214)
T ss_pred ccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhh---HH---HHHHHHHHHHh
Confidence 3334444455555555554 4467899999999999999999999999999999987432 22 22334455555
Q ss_pred cCCCe--EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 88 LGVTK--LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 88 ~~i~~--~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+--|. +|++-||-|+.. +| +-...+...+... +...+...|+++|+|+++-
T Consensus 110 lAs~nIvviL~GnKkDL~~-----~R-~VtflEAs~FaqE------nel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 110 LASPNIVVILCGNKKDLDP-----ER-EVTFLEASRFAQE------NELMFLETSALTGENVEEA 162 (214)
T ss_pred hCCCcEEEEEeCChhhcCh-----hh-hhhHHHHHhhhcc------cceeeeeecccccccHHHH
Confidence 54333 566779999932 11 1222223333332 2457889999999999984
No 264
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.81 E-value=4.6e-08 Score=86.37 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=52.3
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhc-CEEEEEEECCCCccccccccCCchHHHHHHH----HH--cCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTREHVMLA----KT--LGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~a-d~~ilvvda~~g~~~~~~~~~~~~~~~~~~~----~~--~~i~~~ivviNK~ 100 (383)
.+..+.+||||||.+|...+...++.+ +++|+|+|+..... .+ ....+++..+ .. .++| +++++||+
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~--~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~ 119 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK--NL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQ 119 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh--HH---HHHHHHHHHHHHHHhhccCCCC-EEEEecch
Confidence 367899999999999988888888988 99999999987520 00 1222333211 11 3677 89999999
Q ss_pred CCCCCC
Q 016750 101 DDHTVN 106 (383)
Q Consensus 101 D~~~~~ 106 (383)
|+..+.
T Consensus 120 Dl~~a~ 125 (203)
T cd04105 120 DLFTAK 125 (203)
T ss_pred hhcccC
Confidence 985443
No 265
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.80 E-value=9.2e-08 Score=69.85 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=57.9
Q ss_pred CCeeEEEEE--EEccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeEEEEEecCCccCceee
Q 016750 180 GPFRMPIID--KFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257 (383)
Q Consensus 180 ~p~~~~I~~--~~~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G 257 (383)
.|.++.|.. +|+..+ ++.|+|..|+|++|..+ .+..-.+|+||+.+++++++|.+|+.|++.+.|.. ++..|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 355666665 457777 77779999999999999 45567799999999999999999999999999854 68889
Q ss_pred EEE
Q 016750 258 FVL 260 (383)
Q Consensus 258 ~vl 260 (383)
|+|
T Consensus 77 DiL 79 (81)
T PF14578_consen 77 DIL 79 (81)
T ss_dssp -EE
T ss_pred CEE
Confidence 887
No 266
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.80 E-value=3.3e-08 Score=74.31 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=63.7
Q ss_pred CCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCcc
Q 016750 179 NGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 252 (383)
Q Consensus 179 ~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~ 252 (383)
++||.+.|+.+.. ..|.+.++||++|+|+.||.+.+.. ....++.+|... ..++++|.|||+++ +.|++.
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~a--i~gl~~- 76 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAI--LTGLKG- 76 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEE--EECCCC-
Confidence 3688899998874 4799999999999999999998765 555678888655 57899999999998 676644
Q ss_pred CceeeEEEe
Q 016750 253 DILSGFVLS 261 (383)
Q Consensus 253 ~i~~G~vl~ 261 (383)
+..|++|+
T Consensus 77 -~~~Gdtl~ 84 (85)
T cd03690 77 -LRVGDVLG 84 (85)
T ss_pred -CcCccccC
Confidence 78898875
No 267
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.80 E-value=4.8e-08 Score=73.19 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=61.7
Q ss_pred eEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCcee
Q 016750 183 RMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 256 (383)
Q Consensus 183 ~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~ 256 (383)
...|++++. ..|.++++||.+|+|++||.+.+...+...+|..|... ..++++|.|||+++ +.|++. ++.
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~--i~gl~~--~~~ 77 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGV--ITGLKQ--TRT 77 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEE--EECCCC--ccc
Confidence 345666653 47999999999999999999998877777888888554 57899999999999 577644 889
Q ss_pred eEEEec
Q 016750 257 GFVLSS 262 (383)
Q Consensus 257 G~vl~~ 262 (383)
||+|+.
T Consensus 78 Gdtl~~ 83 (83)
T cd04092 78 GDTLVT 83 (83)
T ss_pred CCEEeC
Confidence 999873
No 268
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.79 E-value=3.1e-08 Score=81.66 Aligned_cols=103 Identities=18% Similarity=0.147 Sum_probs=69.7
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH-----HHHHHHHcCCCeEEEEEecCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVVNKMDDH 103 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~ivviNK~D~~ 103 (383)
+..+.++|+||+.++.......+..+|++++|+|++.+.. ..... ........++| +++++||+|+.
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~ 115 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRES-------FENVKEWLLLILINKEGENIP-IILVGNKIDLP 115 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHH-------HHHHHHHHHHHHHhhccCCCc-EEEEEeccccc
Confidence 6789999999999988888888899999999999998642 11111 22233445676 89999999994
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
... ... .. . ......... ..+++++|+.++.|+.++
T Consensus 116 ~~~--~~~--~~-~-~~~~~~~~~-----~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 116 EER--VVS--EE-E-LAEQLAKEL-----GVPYFETSAKTGENVEEL 151 (157)
T ss_pred ccc--chH--HH-H-HHHHHHhhc-----CCcEEEEecCCCCChHHH
Confidence 321 111 11 0 111112111 458999999999999874
No 269
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.79 E-value=2.5e-08 Score=89.91 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=42.5
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCC
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKG 66 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g 66 (383)
.+.|.+.....+.+++.++++|||||+.+ +...+...++.+|++++|+|++..
T Consensus 31 ~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 31 EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred CCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 35677777777888999999999999753 334567788999999999998764
No 270
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.79 E-value=1.1e-08 Score=88.23 Aligned_cols=105 Identities=21% Similarity=0.167 Sum_probs=68.8
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-HH---cCCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~---~~i~~~ivviNK~D~~~ 104 (383)
+..+.+|||||+.+|.......+..+|++++++|.++... ++ .....+..+ +. .+.| +|+++||+|+..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 120 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKS---FE---VVKVIYDKILDMLGKESVP-IVLVGNKSDLHT 120 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEchhhhh
Confidence 3567899999999988777778889999999999987532 11 122222222 22 3567 889999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+ + . ..++...+.+..+ .+++++||++|.|+.++..
T Consensus 121 ~~--~--~--~~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 121 QR--Q--V--STEEGKELAESWG------AAFLESSARENENVEEAFE 156 (180)
T ss_pred cC--c--c--CHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 11 0 0 0112223333332 4799999999999999644
No 271
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=8.7e-09 Score=85.21 Aligned_cols=123 Identities=23% Similarity=0.213 Sum_probs=84.0
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCc-cccccccCCchHHHHHHHHHcCCCeEE
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE-FETGFEKGGQTREHVMLAKTLGVTKLL 94 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~~i 94 (383)
.|+.....+...++..+.|||..|++.+.+....++..++++|++|||++.. ++.. ..+-+.....=...|+| ++
T Consensus 55 ~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~---~t~~~~v~~~E~leg~p-~L 130 (197)
T KOG0076|consen 55 PTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEES---KTAFEKVVENEKLEGAP-VL 130 (197)
T ss_pred cccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHH---HHHHHHHHHHHHhcCCc-hh
Confidence 3555556667777889999999999999999999999999999999999833 2100 01122233333446899 77
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 95 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 95 vviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+.+||-|+.++ ....++...+.. .+..+ ..+.++.|+||++|+|+.+-
T Consensus 131 ~lankqd~q~~----~~~~El~~~~~~-~e~~~---~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 131 VLANKQDLQNA----MEAAELDGVFGL-AELIP---RRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred hhcchhhhhhh----hhHHHHHHHhhh-hhhcC---CccCccccchhhhcccHHHH
Confidence 89999999432 222233332221 23332 34678999999999999983
No 272
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.78 E-value=2.8e-08 Score=88.97 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=66.1
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhh-hcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~-~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~ 102 (383)
....+.||||||++.+... ..++ .+|++++|+|+++... |+ ...+++..+.. .++| +|+|.||+|+
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~S---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 48 EESTLVVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRSS---FE---RASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred EEEEEEEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 4567899999999844332 2345 8999999999987532 21 22334444433 3577 8999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.... + . ..++...+....+ .+++++||++|.|++++.+
T Consensus 119 ~~~~--~--v--~~~~~~~~a~~~~------~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 119 ARSR--E--V--SVQEGRACAVVFD------CKFIETSAGLQHNVDELLE 156 (221)
T ss_pred cccc--e--e--cHHHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Confidence 3211 0 0 0111222333332 4799999999999998644
No 273
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.77 E-value=3.7e-09 Score=85.83 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=75.8
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcC--CCeEEEEEecCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLG--VTKLLLVVNKMDDHT 104 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~--i~~~ivviNK~D~~~ 104 (383)
...++.+|||+|+++|...---+++.+|.+|||.|.++.-. |+ ..+.+...++ .+| +. +++|-||+|+
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdS---Fq---KVKnWV~Elr~mlGnei~-l~IVGNKiDL-- 130 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDS---FQ---KVKNWVLELRTMLGNEIE-LLIVGNKIDL-- 130 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHH---HH---HHHHHHHHHHHHhCCeeE-EEEecCcccH--
Confidence 34567899999999998777778899999999999987532 32 2333333333 334 44 7788999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++..-..++...+.+..| ..++.+||+.+.|+.++++
T Consensus 131 ----EeeR~Vt~qeAe~YAesvG------A~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 131 ----EEERQVTRQEAEAYAESVG------ALYMETSAKDNVGISELFE 168 (218)
T ss_pred ----HHhhhhhHHHHHHHHHhhc------hhheecccccccCHHHHHH
Confidence 2333444555666666665 3688999999999999754
No 274
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.77 E-value=6.9e-08 Score=72.32 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=61.3
Q ss_pred EEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceee
Q 016750 184 MPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 257 (383)
Q Consensus 184 ~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G 257 (383)
..|+++.. ..|.++++||++|+|++||.+.+...+...+|.+|... ..++++|.|||+++ +.|++. ++.|
T Consensus 3 a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~--i~g~~~--~~~G 78 (83)
T cd04088 3 ALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGA--VAGLKD--TATG 78 (83)
T ss_pred EEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEE--EECCCC--CccC
Confidence 45666653 36999999999999999999999888888889888654 57899999999999 477654 8899
Q ss_pred EEEe
Q 016750 258 FVLS 261 (383)
Q Consensus 258 ~vl~ 261 (383)
++++
T Consensus 79 dtl~ 82 (83)
T cd04088 79 DTLC 82 (83)
T ss_pred CEee
Confidence 9986
No 275
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.74 E-value=5.2e-09 Score=82.50 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=71.7
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC---CCeEEEEEecCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHT 104 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~---i~~~ivviNK~D~~~ 104 (383)
.+.++++|||+|+++|.+-+-++.+.||+.+++.|..... +|+ .-+.++..+.+.+ +. +.++-||+|+
T Consensus 45 ~kvklqiwdtagqerfrsvt~ayyrda~allllydianka---sfd---n~~~wlsei~ey~k~~v~-l~llgnk~d~-- 115 (192)
T KOG0083|consen 45 KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKA---SFD---NCQAWLSEIHEYAKEAVA-LMLLGNKCDL-- 115 (192)
T ss_pred cEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccch---hHH---HHHHHHHHHHHHHHhhHh-Hhhhcccccc--
Confidence 3456799999999999999999999999999999987643 233 3444555554443 33 6688999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~ 149 (383)
+. ++. --.++-..+.+..+ +||+..||++|.|++.
T Consensus 116 a~---er~-v~~ddg~kla~~y~------ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 116 AH---ERA-VKRDDGEKLAEAYG------IPFMETSAKTGFNVDL 150 (192)
T ss_pred ch---hhc-cccchHHHHHHHHC------CCceeccccccccHhH
Confidence 32 111 01122223344443 5899999999999986
No 276
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.74 E-value=1e-08 Score=83.54 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=89.1
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec--CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
.|+.|.++.+...-|-+|.....+..+ ..++.+|||+|+++|...+-++++.|..+|+|.|.+...+ |. ...
T Consensus 30 rFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt---f~---kLd 103 (209)
T KOG0080|consen 30 RFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT---FV---KLD 103 (209)
T ss_pred HHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh---HH---hHH
Confidence 356678888888766666666666554 4567899999999999999999999999999999986432 11 222
Q ss_pred HHHHHHHHcC----CCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 80 EHVMLAKTLG----VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 80 ~~~~~~~~~~----i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.++..+.... +- .++|.||+|... ...--+++-..+.+..+ .-|+.+||++.+|+..-
T Consensus 104 ~W~~Eld~Ystn~dii-kmlVgNKiDkes------~R~V~reEG~kfAr~h~------~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 104 IWLKELDLYSTNPDII-KMLVGNKIDKES------ERVVDREEGLKFARKHR------CLFIECSAKTRENVQCC 165 (209)
T ss_pred HHHHHHHhhcCCccHh-Hhhhcccccchh------cccccHHHHHHHHHhhC------cEEEEcchhhhccHHHH
Confidence 2334444332 22 357899999821 11222344445566554 46999999999999874
No 277
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.74 E-value=5.6e-08 Score=85.23 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=67.7
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH-HHHHHHH--cCCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~-~~~~~~~--~~i~~~ivviNK~D~~~~ 105 (383)
...+.||||||++++.. ...++.+|++|+|+|.++... |+ .... ++..++. .++| +|+|.||+|+...
T Consensus 65 ~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 135 (195)
T cd01873 65 SVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNS---LR---NVKTMWYPEIRHFCPRVP-VILVGCKLDLRYA 135 (195)
T ss_pred EEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChhH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhcccc
Confidence 46789999999976432 336789999999999987532 21 2221 3333333 2566 8999999998321
Q ss_pred CccHH-------------HHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKE-------------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+.... ...-..++...+.+..+ ++++.+||++|.|+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~F 188 (195)
T cd01873 136 DLDEVNRARRPLARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDVF 188 (195)
T ss_pred ccchhhhcccccccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHHH
Confidence 00000 00011234445555554 379999999999999853
No 278
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=5.2e-08 Score=81.85 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=82.1
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHH---cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~---~~i~~ 92 (383)
|+......+++++..|++||..|+.++..-+..++...+++|+|||+++... + ...++.+ ..+.. .+.|
T Consensus 48 TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R---i---~eak~eL~~~l~~~~l~~~~- 120 (181)
T KOG0070|consen 48 TIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER---I---EEAKEELHRMLAEPELRNAP- 120 (181)
T ss_pred ccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccCCce-
Confidence 4555666778899999999999999999999999999999999999987531 1 1222222 22222 2455
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
++++.||.|++++- + ..++...+....+. .....+-.++|.+|+|+.+-
T Consensus 121 llv~aNKqD~~~al-s-------~~ei~~~L~l~~l~-~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 121 LLVFANKQDLPGAL-S-------AAEITNKLGLHSLR-SRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EEEEechhhccccC-C-------HHHHHhHhhhhccC-CCCcEEeeccccccccHHHH
Confidence 88999999996642 1 12233333333333 13567889999999998874
No 279
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.8e-08 Score=79.13 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=80.0
Q ss_pred ceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCe-
Q 016750 16 KTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK- 92 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~- 92 (383)
+-++.+...++.++ .++.+|||+|+++|..-+.++.+.+-.+++|.|.+...+ + .....++.-++.+..|+
T Consensus 44 igvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrst---y---nhlsswl~dar~ltnpnt 117 (215)
T KOG0097|consen 44 IGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---Y---NHLSSWLTDARNLTNPNT 117 (215)
T ss_pred cceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhh---h---hhHHHHHhhhhccCCCce
Confidence 33444555566655 456899999999999999999999999999999987432 1 12233344455555453
Q ss_pred -EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 93 -LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 -~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
++++-||.|+.. +.+-.-++.+.+.+.-| ..|+..||++|+|+++.
T Consensus 118 ~i~lignkadle~------qrdv~yeeak~faeeng------l~fle~saktg~nveda 164 (215)
T KOG0097|consen 118 VIFLIGNKADLES------QRDVTYEEAKEFAEENG------LMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEEecchhhhhh------cccCcHHHHHHHHhhcC------eEEEEecccccCcHHHH
Confidence 666779999932 22222334445555544 36999999999999884
No 280
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.70 E-value=2.2e-07 Score=70.09 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=62.0
Q ss_pred eeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC---CccceecCCCCeEEEEEecC-CccCce
Q 016750 182 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDIL 255 (383)
Q Consensus 182 ~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~l~l~g~-~~~~i~ 255 (383)
|.+.|+++.. ..|.++++||++|+|+.||.+++...+++.++..|... ..++++|.|||++++. .++ +..++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCccc
Confidence 3566777753 47999999999999999999998877767788888654 5688999999999962 232 124588
Q ss_pred eeEEEec
Q 016750 256 SGFVLSS 262 (383)
Q Consensus 256 ~G~vl~~ 262 (383)
.|++|+.
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999873
No 281
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.70 E-value=1e-07 Score=76.72 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=80.1
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHH---HHcCCC
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLA---KTLGVT 91 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~---~~~~i~ 91 (383)
-|+....+.++..+..+.+||.||+..|...+.++.+..++++++|||.++.. ++ -.++.+ .++ .-.|+|
T Consensus 51 ptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k---~~---~sr~EL~~LL~k~~l~gip 124 (186)
T KOG0075|consen 51 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDK---LE---ASRSELHDLLDKPSLTGIP 124 (186)
T ss_pred ccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCccc---ch---hhHHHHHHHhcchhhcCCc
Confidence 34444555566677788999999999999999999999999999999987431 11 222222 222 334788
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC--CCCceEEEcccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV--KKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~iSa~~g~~i~~~ 150 (383)
++|.-||.|++++- ++ ..+ ..++|+.. ..++..+.+|++...|++..
T Consensus 125 -~LVLGnK~d~~~AL-~~---~~l-------i~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 125 -LLVLGNKIDLPGAL-SK---IAL-------IERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred -EEEecccccCcccc-cH---HHH-------HHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 88999999997652 11 111 22233321 23566788999999999874
No 282
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.70 E-value=1.9e-07 Score=70.46 Aligned_cols=76 Identities=22% Similarity=0.417 Sum_probs=60.3
Q ss_pred eeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC---cEEEEEEEEEC----CccceecCCCCeEEEEEecCCcc
Q 016750 182 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 252 (383)
Q Consensus 182 ~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~---~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~ 252 (383)
|++.|+++. +..|.++++||.+|+|++||+|++...+ ...+|.+|... ..+++++.|||+++ +.+++
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~--i~gl~-- 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVA--IAGIE-- 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEE--EECCC--
Confidence 467788775 3479999999999999999999987653 24678888443 47899999999996 67764
Q ss_pred CceeeEEEe
Q 016750 253 DILSGFVLS 261 (383)
Q Consensus 253 ~i~~G~vl~ 261 (383)
++..|++|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 488999885
No 283
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.70 E-value=7e-08 Score=87.12 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=59.0
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCC------------ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHK------------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT 78 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~------------~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~ 78 (383)
.++-.+|.......++.+..++.|.||||.- .+..+...++..||++++|+|+.+.-. ...
T Consensus 101 S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~-------~l~ 173 (379)
T KOG1423|consen 101 SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRT-------PLH 173 (379)
T ss_pred cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcC-------ccC
Confidence 3445577777788888899999999999931 134456678889999999999985321 122
Q ss_pred HHHHHHHHH-cCCCeEEEEEecCCC
Q 016750 79 REHVMLAKT-LGVTKLLLVVNKMDD 102 (383)
Q Consensus 79 ~~~~~~~~~-~~i~~~ivviNK~D~ 102 (383)
-..+..+.. ..+| -|+++||+|.
T Consensus 174 p~vl~~l~~ys~ip-s~lvmnkid~ 197 (379)
T KOG1423|consen 174 PRVLHMLEEYSKIP-SILVMNKIDK 197 (379)
T ss_pred hHHHHHHHHHhcCC-ceeeccchhc
Confidence 233333333 3577 5689999998
No 284
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.69 E-value=1.4e-07 Score=77.48 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=78.9
Q ss_pred eeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH----HHcCCCeEEEEEe
Q 016750 23 AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVN 98 (383)
Q Consensus 23 ~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~----~~~~i~~~ivviN 98 (383)
..++++++++++||..|+..+.+-+..++..+|+.|+|||.++... + .+...++..+ +..|.| ++++.|
T Consensus 53 ktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r---~---~e~~~~L~~lL~eerlaG~~-~Lvlan 125 (185)
T KOG0073|consen 53 KTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR---M---QECKQELTELLVEERLAGAP-LLVLAN 125 (185)
T ss_pred EEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH---H---HHHHHHHHHHHhhhhhcCCc-eEEEEe
Confidence 3467789999999999999999999999999999999999977542 1 1233333222 234777 889999
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccc
Q 016750 99 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 99 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~ 149 (383)
|.|++++ .+.+.... .-.+.++++.. .++++-+||.+|+++.+
T Consensus 126 k~dl~~~-l~~~~i~~-~~~L~~l~ks~------~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 126 KQDLPGA-LSLEEISK-ALDLEELAKSH------HWRLVKCSAVTGEDLLE 168 (185)
T ss_pred cCcCccc-cCHHHHHH-hhCHHHhcccc------CceEEEEeccccccHHH
Confidence 9999643 12221111 13344454543 46899999999998876
No 285
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.67 E-value=1.9e-07 Score=70.10 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=56.5
Q ss_pred cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEec
Q 016750 192 DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 262 (383)
Q Consensus 192 ~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~ 262 (383)
..|+++++||+||+|+.||.|+....+...+|..|... ..++++|.|||+++ +.+++. +..||+|++
T Consensus 14 ~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~--v~gl~~--~~~Gdtl~~ 84 (85)
T cd03689 14 HRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIG--LVNPGN--FQIGDTLTE 84 (85)
T ss_pred CCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEE--EECCCC--ccccCEeeC
Confidence 47999999999999999999998877767788888554 57899999999999 666544 889999974
No 286
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.65 E-value=2.9e-07 Score=68.59 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=59.4
Q ss_pred EEEEEEEc-cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeE
Q 016750 184 MPIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 258 (383)
Q Consensus 184 ~~I~~~~~-~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~ 258 (383)
..++++.. ..|.++++||.+|+|++||.|++...+.+.+|.+|... ..+++++.|||+++ +.++ + ++.||
T Consensus 3 a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~--~-~~~Gd 77 (81)
T cd04091 3 GLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGI--D-CASGD 77 (81)
T ss_pred EEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECC--C-cccCC
Confidence 34555542 25999999999999999999999988888889888654 56899999999999 6665 3 78999
Q ss_pred EEe
Q 016750 259 VLS 261 (383)
Q Consensus 259 vl~ 261 (383)
+|+
T Consensus 78 tl~ 80 (81)
T cd04091 78 TFT 80 (81)
T ss_pred Eec
Confidence 986
No 287
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.63 E-value=8.3e-08 Score=87.49 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=42.5
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 67 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~ 67 (383)
+|.......+++++.+|+++|+||.-. .-+++++.++.||++++|+|+..+.
T Consensus 96 TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 96 TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred eecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 566667777899999999999999532 2356788899999999999999754
No 288
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.62 E-value=6.2e-08 Score=77.91 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=79.1
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
+...+.+|||+|++.|...+-.+.+..+++++|.|.+.+.. | ..-+++++.++.. .+| -++|-||.|.++
T Consensus 55 ~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ES---F---~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~- 126 (198)
T KOG0079|consen 55 DRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---F---NNVKRWLEEIRNNCDSVP-KVLVGNKNDDPE- 126 (198)
T ss_pred cEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhh---h---HhHHHHHHHHHhcCcccc-ceecccCCCCcc-
Confidence 45567999999999999888889999999999999998763 3 3566777766654 366 468999999843
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
|.--..++.+.+....| +.++.+|++..+|++.+.
T Consensus 127 -----RrvV~t~dAr~~A~~mg------ie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 127 -----RRVVDTEDARAFALQMG------IELFETSAKENENVEAMF 161 (198)
T ss_pred -----ceeeehHHHHHHHHhcC------chheehhhhhcccchHHH
Confidence 22223344555666555 468999999999999864
No 289
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=8.4e-08 Score=78.10 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=76.0
Q ss_pred EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEEecCCCCCCCc
Q 016750 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 107 (383)
Q Consensus 31 ~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivviNK~D~~~~~~ 107 (383)
.+++|||+|+++|.+.+..-++.|-..+|++|.+..-. | -..+.++.+++.. .-|.++++-||.|++.
T Consensus 68 hLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqS---F---LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~--- 138 (219)
T KOG0081|consen 68 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQS---F---LNVRNWLSQLQTHAYCENPDIVLCGNKADLED--- 138 (219)
T ss_pred EEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHH---H---HHHHHHHHHHHHhhccCCCCEEEEcCccchhh---
Confidence 57899999999999999999999999999999886421 2 1344555444432 3466999999999932
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 108 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+..--.++...+..++|+ |++.+||-+|.|+++..+
T Consensus 139 ---~R~Vs~~qa~~La~kygl------PYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 139 ---QRVVSEDQAAALADKYGL------PYFETSACTGTNVEKAVE 174 (219)
T ss_pred ---hhhhhHHHHHHHHHHhCC------CeeeeccccCcCHHHHHH
Confidence 222223445556666664 799999999999988554
No 290
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.61 E-value=1.8e-07 Score=85.65 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=72.7
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCCh--------HHHHHHhhh-hcCEEEEEEECCCCccccccccCCchHHHHHHHH
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSY--------VPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAK 86 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~--------~~~~~~~~~-~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~ 86 (383)
+|-.+...+|+.+..++++|||||.-|- -.+.+.|++ ..++++|++|++... |+....|..-.-+.-.
T Consensus 201 TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c---gy~lE~Q~~L~~eIk~ 277 (346)
T COG1084 201 TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC---GYSLEEQISLLEEIKE 277 (346)
T ss_pred cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc---CCCHHHHHHHHHHHHH
Confidence 4455566677888889999999997542 345566666 689999999998642 3332222222222223
Q ss_pred HcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 87 TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 87 ~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.+..| +++|+||+|. ++ .++++++...+ ...+. .....+|+..+.+++..
T Consensus 278 ~f~~p-~v~V~nK~D~--~~--~e~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 278 LFKAP-IVVVINKIDI--AD--EEKLEEIEASV----LEEGG-----EEPLKISATKGCGLDKL 327 (346)
T ss_pred hcCCC-eEEEEecccc--cc--hhHHHHHHHHH----Hhhcc-----ccccceeeeehhhHHHH
Confidence 44555 9999999998 43 34444444332 22221 23556777777777653
No 291
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.60 E-value=1.4e-07 Score=79.78 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=76.5
Q ss_pred eeccceeeeec--CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCe
Q 016750 18 VEVGRAHFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTK 92 (383)
Q Consensus 18 i~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~ 92 (383)
.+.....+..+ ...+.+||+||+++|.......++.+|++|+|+|.++... |+ ....++..+... ..|
T Consensus 34 ~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S---~~---~~~~~~~~i~~~~~~~~~- 106 (162)
T PF00071_consen 34 IDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEES---FE---NLKKWLEEIQKYKPEDIP- 106 (162)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHH---HH---THHHHHHHHHHHSTTTSE-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc---cc---cccccccccccccccccc-
Confidence 34444444443 4458899999999998777777889999999999987532 22 333444444433 244
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
++++.||.|+.. ..+ -..++...+.+..+ .+++.+|++++.|+.++
T Consensus 107 iivvg~K~D~~~--~~~----v~~~~~~~~~~~~~------~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 107 IIVVGNKSDLSD--ERE----VSVEEAQEFAKELG------VPYFEVSAKNGENVKEI 152 (162)
T ss_dssp EEEEEETTTGGG--GSS----SCHHHHHHHHHHTT------SEEEEEBTTTTTTHHHH
T ss_pred ceeeeccccccc--ccc----chhhHHHHHHHHhC------CEEEEEECCCCCCHHHH
Confidence 899999999832 111 11233455555554 47999999999999985
No 292
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.59 E-value=5.6e-08 Score=81.31 Aligned_cols=126 Identities=20% Similarity=0.244 Sum_probs=81.8
Q ss_pred hhcceeeccc--eeeeecCcE--EEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHH
Q 016750 13 IKGKTVEVGR--AHFETETTR--FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT 87 (383)
Q Consensus 13 ~rG~Ti~~~~--~~~~~~~~~--i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~ 87 (383)
+.-.||..-+ ..+..+++. +++|||+|+++|-+.-..-.+.||.+++|.|.+.... |+.-..++ |.+..+..
T Consensus 37 qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~S---fe~L~~Wr~EFl~qa~~ 113 (210)
T KOG0394|consen 37 QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKS---FENLENWRKEFLIQASP 113 (210)
T ss_pred HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhh---hccHHHHHHHHHHhcCC
Confidence 3334444333 334445544 5799999999998887788899999999999887542 22112222 22333322
Q ss_pred c---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 L---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 ~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. .-| +||+.||+|+..- +.| .......+..++.-| +++++.+||+.+.|+++..
T Consensus 114 ~~Pe~FP-FVilGNKiD~~~~---~~r-~VS~~~Aq~WC~s~g-----nipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 114 QDPETFP-FVILGNKIDVDGG---KSR-QVSEKKAQTWCKSKG-----NIPYFETSAKEATNVDEAF 170 (210)
T ss_pred CCCCccc-EEEEcccccCCCC---ccc-eeeHHHHHHHHHhcC-----CceeEEecccccccHHHHH
Confidence 1 345 8999999998431 112 223344566777655 6899999999999999854
No 293
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.58 E-value=1.2e-07 Score=82.47 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=68.1
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEEecCCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivviNK~D~~~~~ 106 (383)
..+.+|||||++.|.......++.+|++++++|.+.... |+ ... .++..++.. .+| +|++.||+|+...+
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDS---LE---NVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDA 121 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCc
Confidence 457899999998876544446789999999999976431 11 111 233333322 566 89999999983211
Q ss_pred ccH-----HHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSK-----ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
... .++. ..++...+.+.++. .+++++||++|.|++++.+
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 166 (187)
T cd04129 122 VAKEEYRTQRFV-PIQQGKRVAKEIGA-----KKYMECSALTGEGVDDVFE 166 (187)
T ss_pred ccccccccCCcC-CHHHHHHHHHHhCC-----cEEEEccCCCCCCHHHHHH
Confidence 110 0110 01223344455543 3799999999999999644
No 294
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.57 E-value=2.3e-07 Score=76.05 Aligned_cols=105 Identities=20% Similarity=0.192 Sum_probs=75.3
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-cCCC---eEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVT---KLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-~~i~---~~ivviNK~D~~~~ 105 (383)
.++++|||+|+++|.+-+.++.+++=.+++|.|.++... |+ ....++..+.. .+-| -+.+|-.|.|+ .
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditnr~s---fe---hv~~w~~ea~m~~q~P~k~VFlLVGhKsDL--~ 129 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRES---FE---HVENWVKEAAMATQGPDKVVFLLVGHKSDL--Q 129 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhh---HH---HHHHHHHHHHHhcCCCCeeEEEEeccccch--h
Confidence 356899999999999999999999999999999987431 22 23333333332 2312 26677899999 3
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....-..++...+.+.+|+ .||.+|+++|.|+++...
T Consensus 130 ----SqRqVt~EEaEklAa~hgM------~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 130 ----SQRQVTAEEAEKLAASHGM------AFVETSAKNGCNVEEAFD 166 (213)
T ss_pred ----hhccccHHHHHHHHHhcCc------eEEEecccCCCcHHHHHH
Confidence 2223344556667777775 599999999999998543
No 295
>PRK13768 GTPase; Provisional
Probab=98.57 E-value=2.5e-07 Score=84.42 Aligned_cols=106 Identities=21% Similarity=0.334 Sum_probs=64.9
Q ss_pred CcEEEEEeCCCCCChH------HHHHHhhhh--cCEEEEEEECCCCccccccccCCchHHHHHHHH-----HcCCCeEEE
Q 016750 29 TTRFTILDAPGHKSYV------PNMISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGVTKLLL 95 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~------~~~~~~~~~--ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-----~~~i~~~iv 95 (383)
+..+.++||||+.++. +.....+.. ++++++|+|+..+.. ..+.+...++. ..++| +++
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHHHHHHHHHHHHHcCCC-EEE
Confidence 4479999999976542 223333433 899999999977542 23333222222 56888 889
Q ss_pred EEecCCCCCCCccHHHHHHHHHHHH------------------------HHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 96 VVNKMDDHTVNWSKERYDEIESKMT------------------------PFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 96 viNK~D~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|+||+|+ .+. ...+...+.+. +.++..+. ..+++++|+++++|++++
T Consensus 168 v~nK~D~--~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~----~~~vi~iSa~~~~gl~~L 238 (253)
T PRK13768 168 VLNKADL--LSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL----PVRVIPVSAKTGEGFDEL 238 (253)
T ss_pred EEEhHhh--cCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC----CCcEEEEECCCCcCHHHH
Confidence 9999998 331 11222222111 12333332 247999999999999984
No 296
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.56 E-value=3.5e-07 Score=77.42 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=65.7
Q ss_pred eeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc----CCCeEEEEEe
Q 016750 25 FETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVN 98 (383)
Q Consensus 25 ~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~----~i~~~ivviN 98 (383)
+..++ ..+.+|||+|.++. ...+.+|++++|+|.++... |+ ....++..+... ++| ++++.|
T Consensus 40 i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s---f~---~~~~~~~~i~~~~~~~~~p-iilvgn 107 (158)
T cd04103 40 VLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS---FQ---TVYNLYHQLSSYRNISEIP-LILVGT 107 (158)
T ss_pred EEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEee
Confidence 44455 55889999999753 34567999999999987542 22 223334444332 466 899999
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 99 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 99 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
|+|+...+ +... ..++..++.+..+ .+.++++||++|.|+++++
T Consensus 108 K~Dl~~~~--~~~v--~~~~~~~~~~~~~-----~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 108 QDAISESN--PRVI--DDARARQLCADMK-----RCSYYETCATYGLNVERVF 151 (158)
T ss_pred HHHhhhcC--Cccc--CHHHHHHHHHHhC-----CCcEEEEecCCCCCHHHHH
Confidence 99983111 1111 1122223333322 3579999999999999853
No 297
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.9e-08 Score=91.36 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=82.5
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCCh---------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~---------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+.|+|+|.....++.++..+.|+||+|.++- +......+..||++++||||....+ .++....+
T Consensus 299 v~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t-------~sd~~i~~ 371 (531)
T KOG1191|consen 299 VPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDT-------ESDLKIAR 371 (531)
T ss_pred CCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccc-------ccchHHHH
Confidence 5699999999999999999999999998761 3345567789999999999988765 35555555
Q ss_pred HHHHcCC-----------CeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceE-EEccccccccccccc
Q 016750 84 LAKTLGV-----------TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQF-LPISGLMGLNMKTRV 151 (383)
Q Consensus 84 ~~~~~~i-----------~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~iSa~~g~~i~~~~ 151 (383)
.+...+. .++|+++||.|+... +.++......+....+-. ..++ ..+|+++++|+..+.
T Consensus 372 ~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~------~~~~~~~~~~~~~~~~~~---~~~i~~~vs~~tkeg~~~L~ 442 (531)
T KOG1191|consen 372 ILETEGVGLVVIVNKMEKQRIILVANKSDLVSK------IPEMTKIPVVYPSAEGRS---VFPIVVEVSCTTKEGCERLS 442 (531)
T ss_pred HHHHhccceEEEeccccccceEEEechhhccCc------cccccCCceeccccccCc---ccceEEEeeechhhhHHHHH
Confidence 5554432 347888999998211 111111011111111111 2344 459999999999976
Q ss_pred c
Q 016750 152 D 152 (383)
Q Consensus 152 ~ 152 (383)
+
T Consensus 443 ~ 443 (531)
T KOG1191|consen 443 T 443 (531)
T ss_pred H
Confidence 5
No 298
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.53 E-value=6.6e-07 Score=78.77 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=64.7
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----------------------
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---------------------- 87 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---------------------- 87 (383)
..+.||||+|+++|.......++.+|++|+|+|.++..+ |+ ....++..+..
T Consensus 54 ~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~S---f~---~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~ 127 (202)
T cd04102 54 FFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKS---SQ---NLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGG 127 (202)
T ss_pred EEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHH---HH---HHHHHHHHHHHhhccccccccccccccccccCC
Confidence 468999999999998877788899999999999988643 21 22333333332
Q ss_pred cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccc
Q 016750 88 LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 148 (383)
Q Consensus 88 ~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~ 148 (383)
.++| +|+|.||+|+ .+......+.....-..+.++++. +.+..++.++..+.
T Consensus 128 ~~~P-iilVGnK~Dl--~~~r~~~~~~~~~~~~~ia~~~~~------~~i~~~c~~~~~~~ 179 (202)
T cd04102 128 NQIP-LLVIGTKLDQ--IPEKESSGNLVLTARGFVAEQGNA------EEINLNCTNGRLLA 179 (202)
T ss_pred CCce-EEEEEECccc--hhhcccchHHHhhHhhhHHHhcCC------ceEEEecCCccccc
Confidence 2467 8999999998 321001111122223334455553 45666666554443
No 299
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.52 E-value=5.2e-07 Score=80.67 Aligned_cols=129 Identities=16% Similarity=0.321 Sum_probs=79.6
Q ss_pred HHHHhh-cceeeccceeeee-cCcEEEEEeCCCCCChHHH-----HHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 9 EEERIK-GKTVEVGRAHFET-ETTRFTILDAPGHKSYVPN-----MISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 9 ~~E~~r-G~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~-----~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
|.|-.| |.|+++....+.. +...+++||+||+.+|... ...-++.+++.|+|+|+.....+..+. .....
T Consensus 25 p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~---~~~~~ 101 (232)
T PF04670_consen 25 PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLA---YLSDC 101 (232)
T ss_dssp GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHH---HHHHH
T ss_pred chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHH---HHHHH
Confidence 444444 7888888777764 5669999999999887665 355678999999999998433221111 22334
Q ss_pred HHHHHHc--CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccc
Q 016750 82 VMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG 144 (383)
Q Consensus 82 ~~~~~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g 144 (383)
+..+... +++ +-|++.|||+...+..++.+..+.+.+.+.+...++. .+.+..+|.+..
T Consensus 102 i~~l~~~sp~~~-v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~---~~~~~~TSI~D~ 162 (232)
T PF04670_consen 102 IEALRQYSPNIK-VFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIE---DITFFLTSIWDE 162 (232)
T ss_dssp HHHHHHHSTT-E-EEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-T---SEEEEEE-TTST
T ss_pred HHHHHHhCCCCe-EEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcccc---ceEEEeccCcCc
Confidence 4444443 344 8889999999443444555667777788878776654 467888888763
No 300
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.51 E-value=2.6e-07 Score=79.06 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=45.7
Q ss_pred cCcEEEEEeCCCCCChHHHHHHh---hhhcCEEEEEEECCCCccccccccCCchHHHHH-HHH-----HcCCCeEEEEEe
Q 016750 28 ETTRFTILDAPGHKSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAK-----TLGVTKLLLVVN 98 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~---~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~-~~~-----~~~i~~~ivviN 98 (383)
.+..+.+||+|||.++....... ...+.++|+|||+..-.. .+ ..+-++|. .+. ..++| ++++.|
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~--~~---~~~Ae~Ly~iL~~~~~~~~~~p-iLIacN 120 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQK--EL---RDVAEYLYDILSDTEVQKNKPP-ILIACN 120 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHH--HH---HHHHHHHHHHHHHHHCCTT--E-EEEEEE
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchh--hH---HHHHHHHHHHHHhhhhccCCCC-EEEEEe
Confidence 46789999999999987777665 788999999999974210 01 12223321 111 13455 999999
Q ss_pred cCCCCCCC
Q 016750 99 KMDDHTVN 106 (383)
Q Consensus 99 K~D~~~~~ 106 (383)
|.|+..+.
T Consensus 121 K~Dl~~A~ 128 (181)
T PF09439_consen 121 KQDLFTAK 128 (181)
T ss_dssp -TTSTT--
T ss_pred CccccccC
Confidence 99996543
No 301
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.49 E-value=4.9e-07 Score=72.18 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=57.9
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCC---------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~---------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
..+.|.+.....+.+++..+.|+||||..+ ........+..+|++++|+|+..... .+..+.++
T Consensus 30 ~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-------~~~~~~~~ 102 (116)
T PF01926_consen 30 IPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-------EDDKNILR 102 (116)
T ss_dssp STTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-------HHHHHHHH
T ss_pred cccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHH
Confidence 457788886667788999999999999754 23345566678999999999877321 24556666
Q ss_pred HHHHcCCCeEEEEEec
Q 016750 84 LAKTLGVTKLLLVVNK 99 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK 99 (383)
.++ .+.| +++|+||
T Consensus 103 ~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 103 ELK-NKKP-IILVLNK 116 (116)
T ss_dssp HHH-TTSE-EEEEEES
T ss_pred HHh-cCCC-EEEEEcC
Confidence 675 6666 8999998
No 302
>COG2262 HflX GTPases [General function prediction only]
Probab=98.45 E-value=4.7e-07 Score=85.39 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=76.1
Q ss_pred ceeeccceeeeec-CcEEEEEeCCCCCCh--------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH
Q 016750 16 KTVEVGRAHFETE-TTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK 86 (383)
Q Consensus 16 ~Ti~~~~~~~~~~-~~~i~liDtPG~~~~--------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~ 86 (383)
.|.|.....+... ++++.+.||-|+-+- .+.++.....||+.+.|||++++... .+.......+.
T Consensus 225 ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~------~~~~~v~~vL~ 298 (411)
T COG2262 225 ATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL------EKLEAVEDVLA 298 (411)
T ss_pred ccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH------HHHHHHHHHHH
Confidence 5778888888776 689999999997432 34455666789999999999987432 23333444555
Q ss_pred Hc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 87 TL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 87 ~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+ .+| +|+|.||+|+ +... . ....+ ... ....+++||++|+|++.+.+
T Consensus 299 el~~~~~p-~i~v~NKiD~--~~~~-~----~~~~~----~~~------~~~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 299 EIGADEIP-IILVLNKIDL--LEDE-E----ILAEL----ERG------SPNPVFISAKTGEGLDLLRE 349 (411)
T ss_pred HcCCCCCC-EEEEEecccc--cCch-h----hhhhh----hhc------CCCeEEEEeccCcCHHHHHH
Confidence 54 466 8999999998 4311 1 11111 111 11489999999999988543
No 303
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.45 E-value=1.4e-06 Score=76.51 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=66.3
Q ss_pred cEEEEEeCCCCCChH---HHHH--HhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q 016750 30 TRFTILDAPGHKSYV---PNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 30 ~~i~liDtPG~~~~~---~~~~--~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~ 104 (383)
..+.+|||||..+.. ...+ ..+..+|++++|.|. ... .....++..++..+.| +++|.||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~--~~~-------~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST--RFS-------SNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC--CCC-------HHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 478999999985431 1111 235578988887543 221 4556677788888887 899999999821
Q ss_pred CCc---------cHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccc--ccccccc
Q 016750 105 VNW---------SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL--MGLNMKT 149 (383)
Q Consensus 105 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~--~g~~i~~ 149 (383)
.+. .+.-.+++.+.+.+.++..+.. ..+++.+|+. .+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~---~p~v~~vS~~~~~~~~~~~ 174 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS---EPPVFLVSNFDPSDYDFPK 174 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEeCCChhhcChHH
Confidence 111 0122344555555556554443 3479999998 4555555
No 304
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.45 E-value=1.6e-06 Score=71.82 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=56.8
Q ss_pred HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHH
Q 016750 45 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 122 (383)
Q Consensus 45 ~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~ 122 (383)
+....++..+|++++|+|+..+.. .+..+....+... ++| +++++||+|+ .+ +... ..+.+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~-------~~~~~l~~~l~~~~~~k~-~iivlNK~DL--~~--~~~~----~~~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL-------FRPPDLERYVKEVDPRKK-NILLLNKADL--LT--EEQR----KAWAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc-------cCCHHHHHHHHhccCCCc-EEEEEechhc--CC--HHHH----HHHHHH
Confidence 456788999999999999988763 3555666666665 777 8899999999 42 2222 233334
Q ss_pred HHhcCCCCCCCceEEEcccccccc
Q 016750 123 LKASGYNVKKDVQFLPISGLMGLN 146 (383)
Q Consensus 123 ~~~~~~~~~~~~~~i~iSa~~g~~ 146 (383)
++..+ .+++++||.++.+
T Consensus 67 ~~~~~------~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKEG------IVVVFFSALKENA 84 (141)
T ss_pred HHhcC------CeEEEEEecCCCc
Confidence 44443 3689999999886
No 305
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=8.2e-07 Score=71.31 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=76.6
Q ss_pred eeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH---HcCCCeEE
Q 016750 18 VEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLL 94 (383)
Q Consensus 18 i~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~---~~~i~~~i 94 (383)
+......+.+++-++++||..|+.....-+..++...|.+|+|||..+--. ++ ..-.+...++. ..+. .++
T Consensus 50 igfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr---is--~a~~el~~mL~E~eLq~a-~ll 123 (182)
T KOG0072|consen 50 IGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR---IS--IAGVELYSMLQEEELQHA-KLL 123 (182)
T ss_pred CCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhh---hh--hhHHHHHHHhccHhhcCc-eEE
Confidence 334445567788899999999999999999999999999999999886321 11 11122223332 2233 388
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 95 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 95 vviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|+.||+|.+.+ ...+++...|..-.++ ...+.++..||.+|+|++..
T Consensus 124 v~anKqD~~~~--------~t~~E~~~~L~l~~Lk-~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 124 VFANKQDYSGA--------LTRSEVLKMLGLQKLK-DRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEeccccchhh--------hhHHHHHHHhChHHHh-hheeEEEeeccccccCCcHH
Confidence 89999998433 1222222222111111 12468999999999999984
No 306
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=8.2e-07 Score=70.95 Aligned_cols=113 Identities=14% Similarity=0.187 Sum_probs=75.5
Q ss_pred cceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHH---HHcCCCeEEEE
Q 016750 21 GRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLA---KTLGVTKLLLV 96 (383)
Q Consensus 21 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~---~~~~i~~~ivv 96 (383)
+...+++.+..|+.||..|+.+..+-+..++....+.|||+|+.+.-- + ...++.+ .++ .....+ ++|.
T Consensus 52 nvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr---~---eeAr~ELh~ii~~~em~~~~-~Lvl 124 (180)
T KOG0071|consen 52 NVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---EEARNELHRIINDREMRDAI-ILIL 124 (180)
T ss_pred eEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhh---H---HHHHHHHHHHhCCHhhhcce-EEEE
Confidence 344567789999999999999999999999999999999999876320 0 1111111 122 223455 7788
Q ss_pred EecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccc
Q 016750 97 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 97 iNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~ 149 (383)
.||.|++.+- + ..+ ++.+++.-... ...+-+.|.|+.+|+|+.+
T Consensus 125 ANkQDlp~A~-~---pqe----i~d~leLe~~r-~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 125 ANKQDLPDAM-K---PQE----IQDKLELERIR-DRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred ecCccccccc-C---HHH----HHHHhcccccc-CCccEeeccccccchhHHH
Confidence 9999997552 1 223 33333221121 2356789999999999887
No 307
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.41 E-value=2.7e-06 Score=77.50 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=70.2
Q ss_pred ceeeccceeeeecCcE-EEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH
Q 016750 16 KTVEVGRAHFETETTR-FTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT 87 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~-i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~ 87 (383)
+|+........++++. +++-|.||.-+ +-...++-+..++..++|||.+.+.....+ .|....+..+..
T Consensus 229 TTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~---~~~~lL~~ELe~ 305 (366)
T KOG1489|consen 229 TTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPW---QQLQLLIEELEL 305 (366)
T ss_pred eeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHH---HHHHHHHHHHHH
Confidence 4555555556666655 99999999521 222344556778999999999876210001 122222222222
Q ss_pred c-----CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 L-----GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 ~-----~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. ..| .++|+||+|++.+ ..+.+.++.+.+. +..++|+||++++|+.++.
T Consensus 306 yek~L~~rp-~liVaNKiD~~ea---------e~~~l~~L~~~lq-----~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 306 YEKGLADRP-ALIVANKIDLPEA---------EKNLLSSLAKRLQ-----NPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred HhhhhccCc-eEEEEeccCchhH---------HHHHHHHHHHHcC-----CCcEEEeeeccccchHHHH
Confidence 1 245 6789999998321 1122344444433 2369999999999998853
No 308
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.40 E-value=2.4e-06 Score=72.04 Aligned_cols=82 Identities=24% Similarity=0.284 Sum_probs=54.7
Q ss_pred HHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc
Q 016750 47 MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS 126 (383)
Q Consensus 47 ~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (383)
....++.+|++++|+|+..+.. .+..+....+...+.| +++++||+|+ .+ +..... ...+....
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~-------~~~~~l~~~~~~~~~p-~iiv~NK~Dl--~~--~~~~~~----~~~~~~~~ 69 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPEL-------TRSRKLERYVLELGKK-LLIVLNKADL--VP--KEVLEK----WKSIKESE 69 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcc-------cCCHHHHHHHHhCCCc-EEEEEEhHHh--CC--HHHHHH----HHHHHHhC
Confidence 3445567999999999987653 3455555556666887 8899999998 42 211111 11222222
Q ss_pred CCCCCCCceEEEcccccccccccc
Q 016750 127 GYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 127 ~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
..+++++||++|.|++++
T Consensus 70 ------~~~~~~iSa~~~~gi~~L 87 (156)
T cd01859 70 ------GIPVVYVSAKERLGTKIL 87 (156)
T ss_pred ------CCcEEEEEccccccHHHH
Confidence 236899999999999984
No 309
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.40 E-value=1.4e-06 Score=73.59 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=54.8
Q ss_pred HHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHH
Q 016750 47 MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK 124 (383)
Q Consensus 47 ~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 124 (383)
..+++..+|++++|+|+..+.. .+.......+... ++| +|+|+||+|+ .+ ++..... +. .+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~-------~~~~~i~~~l~~~~~~~p-~ilVlNKiDl--~~--~~~~~~~---~~-~~~ 65 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMG-------TRCKHVEEYLKKEKPHKH-LIFVLNKCDL--VP--TWVTARW---VK-ILS 65 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcc-------ccCHHHHHHHHhccCCCC-EEEEEEchhc--CC--HHHHHHH---HH-HHh
Confidence 4577889999999999988652 3455555555543 377 8899999999 43 2222222 22 222
Q ss_pred hcCCCCCCCceEEEccccccccccccc
Q 016750 125 ASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 125 ~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.. + ...++++||+++.|++++.
T Consensus 66 ~~-~----~~~~~~iSa~~~~~~~~L~ 87 (157)
T cd01858 66 KE-Y----PTIAFHASINNPFGKGSLI 87 (157)
T ss_pred cC-C----cEEEEEeeccccccHHHHH
Confidence 21 1 1236899999999998843
No 310
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.39 E-value=2.2e-06 Score=75.20 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=70.0
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCCh-------HHHHHHh----hhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSY-------VPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~-------~~~~~~~----~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
.+|.|.+.......++++++++|||||..+. ...+... ...+|++|+|+|+.. .. ..+.+.
T Consensus 32 ~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t-------~~d~~~ 103 (196)
T cd01852 32 ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FT-------EEEEQA 103 (196)
T ss_pred CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cC-------HHHHHH
Confidence 4689999888888899999999999997654 2223222 346899999999976 32 456666
Q ss_pred HHHHHHc-C---CCeEEEEEecCCCCCCCccHHHH-HHHHHHHHHHHHhcC
Q 016750 82 VMLAKTL-G---VTKLLLVVNKMDDHTVNWSKERY-DEIESKMTPFLKASG 127 (383)
Q Consensus 82 ~~~~~~~-~---i~~~ivviNK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~ 127 (383)
++.++.. | .+++|+++|+.|....+ +-+.+ ......++.+++.++
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhccHHHHHHHHHhC
Confidence 7666553 3 23588999999973221 11111 222355666666654
No 311
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.35 E-value=1.5e-06 Score=74.54 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=60.3
Q ss_pred CCCCC-ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHH
Q 016750 37 APGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 115 (383)
Q Consensus 37 tPG~~-~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~ 115 (383)
-|||- +.+.++...+..||++++|+|+..+.. ....+.+..+ .+.| .++++||+|+ .+ +.....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~~--~~k~-~ilVlNK~Dl--~~--~~~~~~- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKIL--GNKP-RIIVLNKADL--AD--PKKTKK- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhHh--cCCC-EEEEEehhhc--CC--hHHHHH-
Confidence 47773 567788889999999999999987652 2333333322 3566 7899999999 42 211111
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 116 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..+.++..+ .+++++||+++.|++++.+
T Consensus 67 ---~~~~~~~~~------~~vi~iSa~~~~gi~~L~~ 94 (171)
T cd01856 67 ---WLKYFESKG------EKVLFVNAKSGKGVKKLLK 94 (171)
T ss_pred ---HHHHHHhcC------CeEEEEECCCcccHHHHHH
Confidence 212233222 3689999999999998543
No 312
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.35 E-value=2.2e-06 Score=76.38 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=66.9
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH--cCCCeEEEEEecCCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--~~i~~~ivviNK~D~~~~ 105 (383)
....+.+|||||+++|.......+..+|++++|+|.++... |. .....+..+.. .++| ++++.||+|+...
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---YK---NVPNWHRDIVRVCENIP-IVLVGNKVDVKDR 128 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccCccc
Confidence 45678999999999987766677789999999999987542 11 11222222221 2566 7889999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
... .+ ...+.+.. ...++++|+++|.|+.+..
T Consensus 129 ~~~----~~----~~~~~~~~------~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 129 QVK----AR----QITFHRKK------NLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred cCC----HH----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 110 11 11233332 2478999999999998743
No 313
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.35 E-value=4.2e-06 Score=64.06 Aligned_cols=73 Identities=19% Similarity=0.374 Sum_probs=54.6
Q ss_pred EEEEEE--c-cCCeEEEEEEEEeEEecCCEEEEec---------CCcEEEEEEEEEC----CccceecCCCCeEEEEEec
Q 016750 185 PIIDKF--K-DMGTVVMGKVESGSVREGDSLLVMP---------NKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSG 248 (383)
Q Consensus 185 ~I~~~~--~-~~G~vv~G~V~sG~l~~gd~v~i~p---------~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g 248 (383)
.++.+. + ..|.+.++||++|+|+.||.+.+.. ...+.+|..|... ..++++|.|||+|+ +.|
T Consensus 4 ~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~--i~g 81 (93)
T cd03700 4 YVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVL--IVG 81 (93)
T ss_pred EEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEE--EEC
Confidence 445544 3 4688999999999999999998876 2234677788654 47889999999999 556
Q ss_pred CCccCceeeEEEe
Q 016750 249 IEEEDILSGFVLS 261 (383)
Q Consensus 249 ~~~~~i~~G~vl~ 261 (383)
++. +..|++.+
T Consensus 82 ~~~--~~~g~~~~ 92 (93)
T cd03700 82 LDQ--LKSGTTAT 92 (93)
T ss_pred Ccc--CceEeEec
Confidence 543 67777653
No 314
>PLN00023 GTP-binding protein; Provisional
Probab=98.33 E-value=1.9e-06 Score=80.26 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=60.5
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---------------CCCeEE
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------------GVTKLL 94 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---------------~i~~~i 94 (383)
..+.||||+|+++|.......++.+|++|+|+|.+.... |+ ....++..+... ++| +|
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~S---Fe---nL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-II 155 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT---KT---SLQKWASEVAATGTFSAPLGSGGPGGLPVP-YI 155 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcccccccccccccCCCCc-EE
Confidence 458999999999998888888999999999999987432 11 233344444432 356 89
Q ss_pred EEEecCCCCCCCccHHHH--HHHHHHHHHHHHhcCCC
Q 016750 95 LVVNKMDDHTVNWSKERY--DEIESKMTPFLKASGYN 129 (383)
Q Consensus 95 vviNK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 129 (383)
+|.||+|+ .+....+. ....++.+.+.+..++.
T Consensus 156 LVGNK~DL--~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 156 VIGNKADI--APKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred EEEECccc--cccccccccccccHHHHHHHHHHcCCC
Confidence 99999999 32100011 12345566677776654
No 315
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.26 E-value=4.8e-06 Score=72.68 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=54.9
Q ss_pred ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHH-
Q 016750 42 SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT- 120 (383)
Q Consensus 42 ~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~- 120 (383)
.|...+..++..+|++++|+|+.+... ...+.+ .....+.| +++|+||+|+.... ...........
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~---~~~~~~~~~~~~ 89 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL-RLFGGNNP-VILVGNKIDLLPKD---KNLVRIKNWLRA 89 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCC--------ccchhH-HHhcCCCc-EEEEEEchhcCCCC---CCHHHHHHHHHH
Confidence 356666777889999999999987531 122222 22234666 88999999983211 11111111110
Q ss_pred HHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 121 PFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 121 ~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
...+..++. ..+++++||++|+|++++
T Consensus 90 ~~~~~~~~~---~~~i~~vSA~~~~gi~eL 116 (190)
T cd01855 90 KAAAGLGLK---PKDVILISAKKGWGVEEL 116 (190)
T ss_pred HHHhhcCCC---cccEEEEECCCCCCHHHH
Confidence 111222321 126899999999999984
No 316
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.1e-05 Score=69.59 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=64.7
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhh---hcCEEEEEEECCCCccccccccCCchHHHHHH----HH-H
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVML----AK-T 87 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~---~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~----~~-~ 87 (383)
+++......+.+.+...+++|.|||.+........+. .+-+++||||+..-. ...++..++ +. .
T Consensus 68 tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--------k~vrdvaefLydil~~~ 139 (238)
T KOG0090|consen 68 TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--------KNVRDVAEFLYDILLDS 139 (238)
T ss_pred eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--------hhhHHHHHHHHHHHHhh
Confidence 4556666677777778999999999998888777776 799999999987532 233322222 11 1
Q ss_pred ---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHH
Q 016750 88 ---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTP 121 (383)
Q Consensus 88 ---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~ 121 (383)
.+.++++++.||.|+..+...+...+.++.++..
T Consensus 140 ~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~ 176 (238)
T KOG0090|consen 140 RVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHK 176 (238)
T ss_pred ccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHH
Confidence 2344599999999997665333333344444443
No 317
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.23 E-value=5e-06 Score=76.99 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=59.6
Q ss_pred CCCC-ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHH
Q 016750 38 PGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 116 (383)
Q Consensus 38 PG~~-~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~ 116 (383)
|||- +..+++...+..+|++++|+||..+.. .........+ .+.| +|+|+||+|+ ++ +.....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~-------~~~~~i~~~l--~~kp-~IiVlNK~DL--~~--~~~~~~-- 68 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS-------SRNPMIDEIR--GNKP-RLIVLNKADL--AD--PAVTKQ-- 68 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------CCChhHHHHH--CCCC-EEEEEEcccc--CC--HHHHHH--
Confidence 7874 456778889999999999999987652 2333333333 2566 8899999999 43 221222
Q ss_pred HHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 117 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..+.++..+ .+++++|+.++.|+.++.
T Consensus 69 --~~~~~~~~~------~~vi~iSa~~~~gi~~L~ 95 (276)
T TIGR03596 69 --WLKYFEEKG------IKALAINAKKGKGVKKII 95 (276)
T ss_pred --HHHHHHHcC------CeEEEEECCCcccHHHHH
Confidence 222233222 368999999999998853
No 318
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.20 E-value=1e-05 Score=74.79 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=67.0
Q ss_pred hhcceeeccceeeeecC--cEEEEEeCCCCCChHHH---------------------HHH-----hhh--hcCEEEEEEE
Q 016750 13 IKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPN---------------------MIS-----GAS--QADIGVLVIS 62 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~---------------------~~~-----~~~--~ad~~ilvvd 62 (383)
.+.++++.....++.++ .++++|||||..++..+ ... .+. .+|+++++++
T Consensus 44 ~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~ 123 (276)
T cd01850 44 DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIE 123 (276)
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEe
Confidence 34444555555566555 46899999997654221 111 111 4789999999
Q ss_pred CCC-CccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 016750 63 ARK-GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 128 (383)
Q Consensus 63 a~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (383)
+.. +.. ..+.+.++.+.. ++| +|+|+||+|+ .. +.+....++.+.+.++..++
T Consensus 124 ~~~~~l~-------~~D~~~lk~l~~-~v~-vi~VinK~D~--l~--~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 124 PTGHGLK-------PLDIEFMKRLSK-RVN-IIPVIAKADT--LT--PEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred CCCCCCC-------HHHHHHHHHHhc-cCC-EEEEEECCCc--CC--HHHHHHHHHHHHHHHHHcCC
Confidence 875 331 345667777764 677 8899999998 42 34556677778888877653
No 319
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.19 E-value=4e-06 Score=73.39 Aligned_cols=108 Identities=23% Similarity=0.239 Sum_probs=71.5
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEEEEEecCCCCCCCc
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDHTVNW 107 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~ivviNK~D~~~~~~ 107 (383)
...+.|+||+|.++|.......++.+|+.++|.+.++..+ |+...+.++.+...+ ...+| +++|.||+|++..
T Consensus 50 ~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~S---F~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~-- 123 (196)
T KOG0395|consen 50 VCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSS---FEEAKQLREQILRVKGRDDVP-IILVGNKCDLERE-- 123 (196)
T ss_pred EEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHH---HHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhc--
Confidence 3456799999999999888889999999999999987542 331122333331111 22467 8999999999421
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 108 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+ .-..++...+.... .++++.+||+...|+++++.
T Consensus 124 ---R-~V~~eeg~~la~~~------~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 124 ---R-QVSEEEGKALARSW------GCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred ---c-ccCHHHHHHHHHhc------CCcEEEeeccCCcCHHHHHH
Confidence 1 11122233333333 34699999999999998643
No 320
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.18 E-value=1.8e-05 Score=60.64 Aligned_cols=66 Identities=17% Similarity=0.343 Sum_probs=48.9
Q ss_pred EEEEEEEc--cC-CeEEEEEEEEeEEecCCEEEEecCC---------cEEEEEEEEEC----CccceecCCCCeEEEEEe
Q 016750 184 MPIIDKFK--DM-GTVVMGKVESGSVREGDSLLVMPNK---------AQVKVLAIYCD----DNRVRHAGPGENLRIRLS 247 (383)
Q Consensus 184 ~~I~~~~~--~~-G~vv~G~V~sG~l~~gd~v~i~p~~---------~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~ 247 (383)
..|+++.. .. |...++||+||+|+.||.|++...+ ...+|..|... ..++++|.|||+|+ +.
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~--v~ 80 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVL--IK 80 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEE--EE
Confidence 45565553 34 5579999999999999999875322 34677788655 57899999999999 66
Q ss_pred cCCc
Q 016750 248 GIEE 251 (383)
Q Consensus 248 g~~~ 251 (383)
|++.
T Consensus 81 gl~~ 84 (94)
T cd04090 81 GIDS 84 (94)
T ss_pred Ccch
Confidence 6654
No 321
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.13 E-value=1.7e-05 Score=66.87 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=48.5
Q ss_pred CEEEEEEECCCCccccccccCCchHHHH-HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCC
Q 016750 55 DIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKD 133 (383)
Q Consensus 55 d~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (383)
|++++|+|+..+.. ....... ..+...++| +|+++||+|+ .+ ++...+. +..+ .... .
T Consensus 1 Dvvl~VvD~~~p~~-------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl--~~--~~~~~~~---~~~~-~~~~-----~ 59 (155)
T cd01849 1 DVILEVLDARDPLG-------TRSPDIERVLIKEKGKK-LILVLNKADL--VP--KEVLRKW---LAYL-RHSY-----P 59 (155)
T ss_pred CEEEEEEeccCCcc-------ccCHHHHHHHHhcCCCC-EEEEEechhc--CC--HHHHHHH---HHHH-HhhC-----C
Confidence 78999999987652 2333333 355566787 8899999999 43 2222121 1112 2211 1
Q ss_pred ceEEEccccccccccccc
Q 016750 134 VQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 134 ~~~i~iSa~~g~~i~~~~ 151 (383)
.+++++||.+|.|+.++.
T Consensus 60 ~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 60 TIPFKISATNGQGIEKKE 77 (155)
T ss_pred ceEEEEeccCCcChhhHH
Confidence 368999999999998853
No 322
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.10 E-value=1.6e-05 Score=74.91 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=64.7
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~ 106 (383)
..+..+.|+||+|...-. ......+|.+++|++...|. ...-+. ...+.+. -|+|+||+|+ .+
T Consensus 146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd----------~iq~~k-~gi~E~a-DIiVVNKaDl--~~ 208 (332)
T PRK09435 146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD----------ELQGIK-KGIMELA-DLIVINKADG--DN 208 (332)
T ss_pred ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchH----------HHHHHH-hhhhhhh-heEEeehhcc--cc
Confidence 357899999999987322 22466899999998743331 111111 1112222 2689999998 32
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCC-CCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....+....++...+....-.. ....+++++||.+|.|++++.+
T Consensus 209 --~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 209 --KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred --hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 2233455556666655322000 0124899999999999999754
No 323
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.09 E-value=8.6e-06 Score=64.05 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=65.8
Q ss_pred EEeCCC----CCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccH
Q 016750 34 ILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 109 (383)
Q Consensus 34 liDtPG----~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~ 109 (383)
.||||| |..+.+..+.....+|++++|-.++++.. +.-..++.....| .|-+++|.|+ ++ .
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s----------~f~p~f~~~~~k~-vIgvVTK~DL--ae--d 105 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPES----------RFPPGFLDIGVKK-VIGVVTKADL--AE--D 105 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccc----------cCCcccccccccc-eEEEEecccc--cc--h
Confidence 589999 56666667777889999999999998752 1111233344455 8899999999 42 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 110 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+-.+..+.+|...|-. +++.+|+.+..|++++
T Consensus 106 ----~dI~~~~~~L~eaGa~-----~IF~~s~~d~~gv~~l 137 (148)
T COG4917 106 ----ADISLVKRWLREAGAE-----PIFETSAVDNQGVEEL 137 (148)
T ss_pred ----HhHHHHHHHHHHcCCc-----ceEEEeccCcccHHHH
Confidence 2234455566666633 8999999999999984
No 324
>PRK12289 GTPase RsgA; Reviewed
Probab=98.08 E-value=1.4e-05 Score=76.15 Aligned_cols=84 Identities=24% Similarity=0.288 Sum_probs=57.0
Q ss_pred HhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 016750 49 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 128 (383)
Q Consensus 49 ~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (383)
.++.++|.+++|+|+.++.+. .....+.+..+...++| +|+|+||+|+ ++ +... +.+...+...|+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~-----~~~LdR~L~~a~~~~ip-~ILVlNK~DL--v~--~~~~----~~~~~~~~~~g~ 150 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLD-----PWQLSRFLVKAESTGLE-IVLCLNKADL--VS--PTEQ----QQWQDRLQQWGY 150 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEchhc--CC--hHHH----HHHHHHHHhcCC
Confidence 357899999999999865421 01334555666677888 8899999999 43 2222 223334445553
Q ss_pred CCCCCceEEEcccccccccccccc
Q 016750 129 NVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 129 ~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++++||.+|.|++++.+
T Consensus 151 ------~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 151 ------QPLFISVETGIGLEALLE 168 (352)
T ss_pred ------eEEEEEcCCCCCHHHHhh
Confidence 689999999999988543
No 325
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.07 E-value=1.2e-05 Score=69.34 Aligned_cols=136 Identities=21% Similarity=0.228 Sum_probs=86.1
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec-CcE--EEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE-TTR--FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT 78 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~-~~~--i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~ 78 (383)
+|..+.+|+|.-.-+. |--...++.+ ++. +.+|||+|+++|-+-..-.+..+|++|++++.....+ |+ .-.
T Consensus 23 ~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S---~~--nv~ 96 (198)
T KOG0393|consen 23 SYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES---FE--NVK 96 (198)
T ss_pred EeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh---HH--HHH
Confidence 4556677777665554 4444555553 554 5799999999997744447779999999998776542 22 112
Q ss_pred HHHHHHHHHc--CCCeEEEEEecCCCCCCCccHHHHHHH---------HHHHHHHHHhcCCCCCCCceEEEccccccccc
Q 016750 79 REHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 147 (383)
Q Consensus 79 ~~~~~~~~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i 147 (383)
..++-.++.. ++| +|+|.+|.||. + +....+.+ .++...+.+++|. ..++.+||++..|+
T Consensus 97 ~kW~pEi~~~cp~vp-iiLVGtk~DLr--~-d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-----~~y~EcSa~tq~~v 167 (198)
T KOG0393|consen 97 SKWIPEIKHHCPNVP-IILVGTKADLR--D-DPSTLEKLQRQGLEPVTYEQGLELAKEIGA-----VKYLECSALTQKGV 167 (198)
T ss_pred hhhhHHHHhhCCCCC-EEEEeehHHhh--h-CHHHHHHHHhccCCcccHHHHHHHHHHhCc-----ceeeeehhhhhCCc
Confidence 2223333333 577 99999999993 2 11121111 1233445566663 37999999999998
Q ss_pred ccccc
Q 016750 148 KTRVD 152 (383)
Q Consensus 148 ~~~~~ 152 (383)
.+.++
T Consensus 168 ~~vF~ 172 (198)
T KOG0393|consen 168 KEVFD 172 (198)
T ss_pred HHHHH
Confidence 88543
No 326
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.07 E-value=1.2e-05 Score=74.87 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=59.7
Q ss_pred CCCCCC-hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHH
Q 016750 37 APGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 115 (383)
Q Consensus 37 tPG~~~-~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~ 115 (383)
-|||-. -.+++...+..+|++|+|+|+..+.. ....+....+. +.| +++|+||+|+ ++ +...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~-------~~~~~l~~~~~--~kp-~iiVlNK~DL--~~--~~~~--- 69 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS-------SENPMIDKIIG--NKP-RLLILNKSDL--AD--PEVT--- 69 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------CCChhHHHHhC--CCC-EEEEEEchhc--CC--HHHH---
Confidence 478743 46677788899999999999987652 23333333332 666 7899999999 43 2212
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 116 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+...+.++..+ .+++++|+.++.|+.++.
T Consensus 70 -~~~~~~~~~~~------~~vi~vSa~~~~gi~~L~ 98 (287)
T PRK09563 70 -KKWIEYFEEQG------IKALAINAKKGQGVKKIL 98 (287)
T ss_pred -HHHHHHHHHcC------CeEEEEECCCcccHHHHH
Confidence 12222333222 368999999999998854
No 327
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.05 E-value=3.5e-06 Score=67.29 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=51.9
Q ss_pred cceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc-----C
Q 016750 15 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----G 89 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~-----~ 89 (383)
+.++.............+.|+|++|+..+.......+..+|++|+|+|.++... + .+..+.+..+... +
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s---~---~~~~~~~~~l~~~~~~~~~ 108 (119)
T PF08477_consen 35 EITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES---L---EYLSQLLKWLKNIRKRDKN 108 (119)
T ss_dssp TSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH---H---HHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHH---H---HHHHHHHHHHHHHHccCCC
Confidence 334433333344445568999999998887765555899999999999987542 1 1222333333332 4
Q ss_pred CCeEEEEEecCC
Q 016750 90 VTKLLLVVNKMD 101 (383)
Q Consensus 90 i~~~ivviNK~D 101 (383)
+| +|++.||.|
T Consensus 109 ~p-iilv~nK~D 119 (119)
T PF08477_consen 109 IP-IILVGNKSD 119 (119)
T ss_dssp SE-EEEEEE-TC
T ss_pred CC-EEEEEeccC
Confidence 77 899999998
No 328
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.05 E-value=7.4e-06 Score=74.41 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=59.4
Q ss_pred CChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHH
Q 016750 41 KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 120 (383)
Q Consensus 41 ~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~ 120 (383)
++|...+...++++|.+++|+|+.++.+ .+ ....+++..+...++| +++++||+|+ .+. .. ...+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~--s~---~~l~r~l~~~~~~~i~-~vIV~NK~DL--~~~--~~---~~~~~~ 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPEL--SL---NQLDRFLVVAEAQNIE-PIIVLNKIDL--LDD--ED---MEKEQL 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEECccc--CCC--HH---HHHHHH
Confidence 3444434456889999999999987542 11 1334455566667888 7899999999 431 11 111222
Q ss_pred HHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 121 PFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 121 ~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..++..+ .+++.+||++|.|++++.
T Consensus 91 ~~~~~~g------~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 91 DIYRNIG------YQVLMTSSKNQDGLKELI 115 (245)
T ss_pred HHHHHCC------CeEEEEecCCchhHHHHH
Confidence 2333444 469999999999998853
No 329
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.05 E-value=4.4e-05 Score=68.64 Aligned_cols=111 Identities=16% Similarity=0.264 Sum_probs=74.6
Q ss_pred eecCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCC-CeEEEEE
Q 016750 26 ETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVV 97 (383)
Q Consensus 26 ~~~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i-~~~ivvi 97 (383)
.++++.++||||||..+ +.......+...|.+++++|+.+... ..+...+..+...+. .++++++
T Consensus 83 ~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-------~~d~~f~~dVi~~~~~~~~i~~V 155 (296)
T COG3596 83 SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-------GTDEDFLRDVIILGLDKRVLFVV 155 (296)
T ss_pred hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-------cCCHHHHHHHHHhccCceeEEEE
Confidence 45678999999999876 66677888889999999999988652 344555555555544 4599999
Q ss_pred ecCCCCCC--Ccc-------HHHHHHH---HHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 98 NKMDDHTV--NWS-------KERYDEI---ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 98 NK~D~~~~--~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|-.|.... +|+ .+..+.+ .+.+.+++.. --|++.+|+..++|++.+
T Consensus 156 tQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l 213 (296)
T COG3596 156 TQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------VKPVVAVSGRLPWGLKEL 213 (296)
T ss_pred ehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-------cCCeEEeccccCccHHHH
Confidence 99997321 222 1122222 2333334433 237888888888998885
No 330
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.05 E-value=5.8e-06 Score=74.64 Aligned_cols=112 Identities=15% Similarity=0.253 Sum_probs=52.4
Q ss_pred EEEEEeCCCCCChH------HHHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 31 RFTILDAPGHKSYV------PNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 31 ~i~liDtPG~~~~~------~~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+.++||||+.++. ......+. ..=++++++|+..-.....|- ......+....+++.| .|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 78999999987653 33333333 345889999987532100000 0001111223447899 6789999999
Q ss_pred CCCCccHHH-----------------HHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 103 HTVNWSKER-----------------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 103 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.... .+.. +....+.+.+++...+. ..+++|+|+.+++++.++
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL----VIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS----S---EE-BTTTTTTHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC----CceEEEEECCChHHHHHH
Confidence 3210 0111 12222233333333332 128999999999999984
No 331
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.01 E-value=3.4e-05 Score=69.02 Aligned_cols=122 Identities=15% Similarity=0.227 Sum_probs=66.6
Q ss_pred cCcEEEEEeCCCCCChHHHH------HH--hhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEec
Q 016750 28 ETTRFTILDAPGHKSYVPNM------IS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 99 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~------~~--~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK 99 (383)
+..++.+|||||+-+-.... .. +....-++++|||....-...-|- ........++.+..+| +|++.||
T Consensus 114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNMlYAcSilyktklp-~ivvfNK 190 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNMLYACSILYKTKLP-FIVVFNK 190 (366)
T ss_pred cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHHHHHHHHHHhccCC-eEEEEec
Confidence 35678999999985432111 11 233567889999976533110010 1122233455566888 9999999
Q ss_pred CCCCCCCcc------HHHHHHHHHH-----HHHHHHhcCCC---CCCCceEEEcccccccccccccc
Q 016750 100 MDDHTVNWS------KERYDEIESK-----MTPFLKASGYN---VKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 100 ~D~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.|+....+. -+.|.+..++ +..+...+.+- .......+-+|+.+|.|+++++.
T Consensus 191 ~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~ 257 (366)
T KOG1532|consen 191 TDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFT 257 (366)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHH
Confidence 999443211 1223333322 01111111000 01245799999999999998653
No 332
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.00 E-value=2.1e-05 Score=70.01 Aligned_cols=94 Identities=20% Similarity=0.112 Sum_probs=63.3
Q ss_pred ecCCCHHHHhhcceeeccceeeeec--CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
+.+...++....+..+......... ...+.+|||+|+++|...+..+...++++++++|...... +. .-..+.
T Consensus 26 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~---~~--~~~~~~ 100 (219)
T COG1100 26 VGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES---SD--ELTEEW 100 (219)
T ss_pred hcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchh---hh--HHHHHH
Confidence 3455555555554444433333333 4568999999999999989999999999999999986221 11 233444
Q ss_pred HHHHHHcC---CCeEEEEEecCCCC
Q 016750 82 VMLAKTLG---VTKLLLVVNKMDDH 103 (383)
Q Consensus 82 ~~~~~~~~---i~~~ivviNK~D~~ 103 (383)
...+.... .| ++++.||+|+.
T Consensus 101 ~~~l~~~~~~~~~-iilv~nK~Dl~ 124 (219)
T COG1100 101 LEELRELAPDDVP-ILLVGNKIDLF 124 (219)
T ss_pred HHHHHHhCCCCce-EEEEecccccc
Confidence 44555543 66 99999999994
No 333
>PRK00098 GTPase RsgA; Reviewed
Probab=97.91 E-value=2.5e-05 Score=73.16 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=54.4
Q ss_pred hhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC
Q 016750 51 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 130 (383)
Q Consensus 51 ~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
+.++|.+++|+|+.++.+. .....+.+..+...++| +++|+||+|+ .+ +... .......++..+
T Consensus 78 aaniD~vllV~d~~~p~~~-----~~~idr~L~~~~~~~ip-~iIVlNK~DL--~~-~~~~----~~~~~~~~~~~g--- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-----TDLLDRFLVLAEANGIK-PIIVLNKIDL--LD-DLEE----ARELLALYRAIG--- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEhHHc--CC-CHHH----HHHHHHHHHHCC---
Confidence 4789999999999765420 01223455556777888 7899999999 42 1111 122333344444
Q ss_pred CCCceEEEccccccccccccc
Q 016750 131 KKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 131 ~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+++++||++|.|++++.
T Consensus 142 ---~~v~~vSA~~g~gi~~L~ 159 (298)
T PRK00098 142 ---YDVLELSAKEGEGLDELK 159 (298)
T ss_pred ---CeEEEEeCCCCccHHHHH
Confidence 369999999999998853
No 334
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.84 E-value=0.00042 Score=70.67 Aligned_cols=180 Identities=17% Similarity=0.217 Sum_probs=118.8
Q ss_pred EEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe-cCCCCCCCccHHHH
Q 016750 34 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 112 (383)
Q Consensus 34 liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN-K~D~~~~~~~~~~~ 112 (383)
=-||-|.-+-+...+..+..-+.-+=|+.+.-|. -++.-+.++...+ .+|+..| |.+.
T Consensus 391 kad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~---------i~~~Dv~~a~~~~--a~i~~Fnv~~~~---------- 449 (587)
T TIGR00487 391 KADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGG---------ITETDISLASASN--AIIIGFNVRPDA---------- 449 (587)
T ss_pred EeCCcchHHHHHHHHHhhcccCCeEEEEEeecCC---------CchhhHHHHHhcC--CEEEEEecCCCH----------
Confidence 3477787666777777777778888888887764 4555566666665 2667777 2221
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccHHHHhhccCCCCCCCCCCeeEEEEEEEc-
Q 016750 113 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK- 191 (383)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~- 191 (383)
..+...+..+ +++..-+- |.++.+. +.+.+..+.+|.....---...|..+|+
T Consensus 450 -----~~~~~a~~~~------v~i~~~~i-----IY~l~d~----------~~~~~~~~~~~~~~~~~~g~a~v~~vf~~ 503 (587)
T TIGR00487 450 -----TAKNVAEAEN------VDIRYYSV-----IYKLIDE----------IRAAMKGMLDPEYEEEIIGQAEVRQVFNV 503 (587)
T ss_pred -----HHHHHHHHcC------CeEEEeCh-----HHHHHHH----------HHHHHHhccCcceeeEeeeeEEEEEEEec
Confidence 1222333333 33433211 2233221 3444444433332221122445667775
Q ss_pred -cCCeEEEEEEEEeEEecCCEEEEecCCcE---EEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEEEec
Q 016750 192 -DMGTVVMGKVESGSVREGDSLLVMPNKAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 262 (383)
Q Consensus 192 -~~G~vv~G~V~sG~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~ 262 (383)
..|.++.++|..|+|+.|..+.+...+.. -+|.||+.+.++++++..|+-|++.+.+. .+++.||++-.
T Consensus 504 ~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 576 (587)
T TIGR00487 504 PKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIEA 576 (587)
T ss_pred CCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEEE
Confidence 35899999999999999999999987753 47899999999999999999999999965 66999998853
No 335
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.82 E-value=8.2e-05 Score=69.75 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=60.5
Q ss_pred eecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 016750 26 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 26 ~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~ 105 (383)
+..++.+.|+||||... .....+..+|.++++.+...+ ...+.... ...+++ .++++||+|+...
T Consensus 123 ~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~----------~el~~~~~-~l~~~~-~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 123 DAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG----------DDLQGIKA-GLMEIA-DIYVVNKADGEGA 187 (300)
T ss_pred HhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc----------HHHHHHHH-HHhhhc-cEEEEEcccccch
Confidence 34578999999999652 223456778999988654432 22222211 124566 5789999999432
Q ss_pred CccHHHHHHHHHHHHHHHHhc-----CCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKAS-----GYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.........+...+..+ ++ ..+++++||++|+|++++.+
T Consensus 188 ----~~~~~~~~~~~~~l~~l~~~~~~~----~~~v~~iSA~~g~Gi~~L~~ 231 (300)
T TIGR00750 188 ----TNVTIARLMLALALEEIRRREDGW----RPPVLTTSAVEGRGIDELWD 231 (300)
T ss_pred ----hHHHHHHHHHHHHHhhccccccCC----CCCEEEEEccCCCCHHHHHH
Confidence 11111122221111111 12 13699999999999999654
No 336
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.81 E-value=4e-05 Score=61.55 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=81.5
Q ss_pred CHHHHhhcceeeccce--eeeecC-cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-H
Q 016750 8 NEEERIKGKTVEVGRA--HFETET-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-M 83 (383)
Q Consensus 8 ~~~E~~rG~Ti~~~~~--~~~~~~-~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~ 83 (383)
++.|--|-+|..-++. .+++++ .++++||..|++....-+..++.+.|..|+|||+++.-+ |+ .+.+++ +
T Consensus 37 L~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---fe---E~~~el~E 110 (185)
T KOG0074|consen 37 LKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---FE---EISEELVE 110 (185)
T ss_pred HccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---HH---HHHHHHHH
Confidence 3445555555555443 445554 899999999999998888899999999999999876543 22 222232 3
Q ss_pred HHH---HcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 84 LAK---TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 84 ~~~---~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
++. ...+| +.+..||.|+..+ ...+++...+ ...++. ...+.+-.+|+.+++|+.+.+
T Consensus 111 LleeeKl~~vp-vlIfankQdllta----a~~eeia~kl----nl~~lr-dRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 111 LLEEEKLAEVP-VLIFANKQDLLTA----AKVEEIALKL----NLAGLR-DRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred Hhhhhhhhccc-eeehhhhhHHHhh----cchHHHHHhc----chhhhh-hceEEeeeCccccccCccCcc
Confidence 332 33577 7788999998322 2222332222 111211 124678889999999988753
No 337
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.80 E-value=6.9e-05 Score=72.04 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=60.2
Q ss_pred CChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHH
Q 016750 41 KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 120 (383)
Q Consensus 41 ~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~ 120 (383)
++|...+......+|++++|+|+.+.. ......+.... .+.| +++|+||+|+...+ ...+.+.+.+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~-~~~p-iilV~NK~DLl~k~---~~~~~~~~~l~ 117 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV-GGNP-VLLVGNKIDLLPKS---VNLSKIKEWMK 117 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh-CCCC-EEEEEEchhhCCCC---CCHHHHHHHHH
Confidence 456654455556889999999987643 22222222111 1556 88999999983211 11234455555
Q ss_pred HHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 121 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 121 ~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+.++..++. ...++++||++|.|++++.+
T Consensus 118 ~~~k~~g~~---~~~i~~vSAk~g~gv~eL~~ 146 (360)
T TIGR03597 118 KRAKELGLK---PVDIILVSAKKGNGIDELLD 146 (360)
T ss_pred HHHHHcCCC---cCcEEEecCCCCCCHHHHHH
Confidence 566666653 12589999999999998643
No 338
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.79 E-value=4.5e-05 Score=66.55 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=83.1
Q ss_pred Hhhcceeeccceeeeec-CcEEEEEeCCCCCChHHHHHH-----hhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 12 RIKGKTVEVGRAHFETE-TTRFTILDAPGHKSYVPNMIS-----GASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~-~~~i~liDtPG~~~~~~~~~~-----~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
+.-|-|||+...+..+- +-.+++||+.|++.|+++..+ .++..++.++|+|+....+++.+. .....++.+
T Consensus 34 ~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le~l 110 (295)
T KOG3886|consen 34 RRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLEAL 110 (295)
T ss_pred hccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHHHH
Confidence 45588999988888764 467799999999988887766 467899999999999887754443 334444444
Q ss_pred HHcC-CCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccc
Q 016750 86 KTLG-VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 143 (383)
Q Consensus 86 ~~~~-i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 143 (383)
.+.. .-++++.+.|||+...+..+..+....+.+..+-..++ ...+|.|.+.
T Consensus 111 l~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~------~~~f~TsiwD 163 (295)
T KOG3886|consen 111 LQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLE------CKCFPTSIWD 163 (295)
T ss_pred HhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhccccc------ccccccchhh
Confidence 3332 22377889999996555445555555555544433332 3567777654
No 339
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.79 E-value=0.00011 Score=66.19 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=49.1
Q ss_pred CcEEEEEeCCCCCCh------------H-HHHHHhhh-hcCEEEEEEECCCCccccccccCCch-HHHHHHHHHcCCCeE
Q 016750 29 TTRFTILDAPGHKSY------------V-PNMISGAS-QADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTLGVTKL 93 (383)
Q Consensus 29 ~~~i~liDtPG~~~~------------~-~~~~~~~~-~ad~~ilvvda~~g~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 93 (383)
-..++|+||||..+. + ..+..++. ..+.+++|+|++.++. .++ .+.++.+...+.+ .
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~-------~~d~l~ia~~ld~~~~r-t 195 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-------NSDALKLAKEVDPQGER-T 195 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC-------chhHHHHHHHHHHcCCc-E
Confidence 357999999997421 2 23445666 4569999999998763 344 5777788888887 8
Q ss_pred EEEEecCCC
Q 016750 94 LLVVNKMDD 102 (383)
Q Consensus 94 ivviNK~D~ 102 (383)
|+|+||+|.
T Consensus 196 i~ViTK~D~ 204 (240)
T smart00053 196 IGVITKLDL 204 (240)
T ss_pred EEEEECCCC
Confidence 899999998
No 340
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.77 E-value=0.00082 Score=69.88 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=121.2
Q ss_pred EEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe-cCCCCCCCccHHH
Q 016750 33 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKER 111 (383)
Q Consensus 33 ~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN-K~D~~~~~~~~~~ 111 (383)
.=-|+-|.-+-+...+..+....+-+=|+.+.-|. -+..-+.++...+. +|+..| |.+ ..
T Consensus 547 iKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~---------it~~Dv~lA~~~~a--~ii~Fnv~~~-------~~- 607 (742)
T CHL00189 547 IKTDTQGSIEAIINSISQIPQKKVQLNILYASLGE---------VTETDVEFASTTNA--EILAFNTNLA-------PG- 607 (742)
T ss_pred EEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecCC---------CCHHHHHHHHhcCC--EEEEeeCCCC-------HH-
Confidence 33588887777777777777777888888887764 45556666666653 667777 222 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccHHHHhhccCCCCCCCCCCeeEEEEEEEc
Q 016750 112 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK 191 (383)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~ 191 (383)
+....+..+ +.+..-+- |.++.+. +.+.+..+.+|.......-+..|..+|+
T Consensus 608 -------~~~~a~~~~------v~i~~~~i-----IY~lid~----------~~~~~~~~l~~~~~~~~~g~a~v~~vF~ 659 (742)
T CHL00189 608 -------AKKAARKLN------IIIKEYQV-----IYDLLEY----------IEALMEDLLDPEYKKVPIGEAEVKTVFP 659 (742)
T ss_pred -------HHHHHHHcC------CEEEEeCh-----HHHHHHH----------HHHHHhhccCceeeeeeceeEEeeEEEe
Confidence 222333333 33433211 2233221 3344444434433323333556777874
Q ss_pred -cCCeEEEEEEEEeEEecCCEEEEecCCcE---EEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEEEec
Q 016750 192 -DMGTVVMGKVESGSVREGDSLLVMPNKAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 262 (383)
Q Consensus 192 -~~G~vv~G~V~sG~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~ 262 (383)
..|.++.++|.+|.|+.|..+.+...+.. -+|.||+.+.+++.++..|+-||+.+.+. .|++.||++-.
T Consensus 660 ~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie~ 732 (742)
T CHL00189 660 LAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIHA 732 (742)
T ss_pred cCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEEE
Confidence 35899999999999999999999988754 47889999999999999999999999954 66999999853
No 341
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.76 E-value=9.3e-05 Score=68.90 Aligned_cols=80 Identities=23% Similarity=0.195 Sum_probs=53.1
Q ss_pred hhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC
Q 016750 51 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 130 (383)
Q Consensus 51 ~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
+.++|.+++|+|+..+.+ + -....+++..+...++| +++|+||+|+ .+. .. ... ........+
T Consensus 76 ~anvD~vllV~d~~~p~~----s-~~~ldr~L~~~~~~~ip-~iIVlNK~DL--~~~--~~---~~~-~~~~~~~~g--- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFF----N-PRLLDRYLVAAEAAGIE-PVIVLTKADL--LDD--EE---EEL-ELVEALALG--- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCC----C-HHHHHHHHHHHHHcCCC-EEEEEEHHHC--CCh--HH---HHH-HHHHHHhCC---
Confidence 678999999999987642 1 01233456666777888 8899999999 431 11 111 111223333
Q ss_pred CCCceEEEcccccccccccc
Q 016750 131 KKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 131 ~~~~~~i~iSa~~g~~i~~~ 150 (383)
.+++++||+++.|++++
T Consensus 139 ---~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 139 ---YPVLAVSAKTGEGLDEL 155 (287)
T ss_pred ---CeEEEEECCCCccHHHH
Confidence 47999999999999874
No 342
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.75 E-value=0.00011 Score=60.10 Aligned_cols=134 Identities=15% Similarity=0.222 Sum_probs=92.0
Q ss_pred eecCCCHHHHhhcceeec--cceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 3 YIMDTNEEERIKGKTVEV--GRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~--~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|+-+..++|+..-.-+.. ...++.--+..|.+||..|+++|....--+...+-++++++|.+...+ -....+
T Consensus 40 YV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T------LnSi~~ 113 (205)
T KOG1673|consen 40 YVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST------LNSIKE 113 (205)
T ss_pred hhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH------HHHHHH
Confidence 344555555554332222 222333345567899999999998887778888999999999987653 134566
Q ss_pred HHHHHHHcC---CCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 81 HVMLAKTLG---VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 81 ~~~~~~~~~---i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+.++++.++ +| |++.+|-|+- .+.+.+-.+.+..+.+.+.+-+ +.+.+.+|+.+..|+....
T Consensus 114 WY~QAr~~NktAiP--ilvGTKyD~f-i~lp~e~Q~~I~~qar~YAk~m------nAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 114 WYRQARGLNKTAIP--ILVGTKYDLF-IDLPPELQETISRQARKYAKVM------NASLFFCSTSHSINVQKIF 178 (205)
T ss_pred HHHHHhccCCccce--EEeccchHhh-hcCCHHHHHHHHHHHHHHHHHh------CCcEEEeeccccccHHHHH
Confidence 777887775 55 5789999973 4555555566667677777665 3578899999999998743
No 343
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.75 E-value=0.00029 Score=66.31 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=28.8
Q ss_pred cEEEEEeCCCC----CCh---HHHHHHhhhhcCEEEEEEECCC
Q 016750 30 TRFTILDAPGH----KSY---VPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 30 ~~i~liDtPG~----~~~---~~~~~~~~~~ad~~ilvvda~~ 65 (383)
..+.||||||. +++ ....+..++.||++++|||+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 57999999997 333 3456677999999999999974
No 344
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.71 E-value=0.0012 Score=69.20 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=118.6
Q ss_pred EeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe-cCCCCCCCccHHHHH
Q 016750 35 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERYD 113 (383)
Q Consensus 35 iDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN-K~D~~~~~~~~~~~~ 113 (383)
-|+-|.-+-+...+..+..-++-+=|+.+.-|. -+..-+.++...+ .+|+..| |.+.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~---------it~~Dv~la~~~~--a~ii~Fnv~~~~----------- 651 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGA---------ITESDVTLAAASN--AIIIGFNVRPDA----------- 651 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCC---------CCHHHHHHHHhcC--CEEEEEcCCCCH-----------
Confidence 477787777777777777778888888887764 4555555665555 2667777 2221
Q ss_pred HHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccHHHHhhccCCCCCCCCCCeeEEEEEEEc--
Q 016750 114 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-- 191 (383)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~-- 191 (383)
.+....+..+ +.+..-+- |.++.+. +.+.+..+..|.....---...|..+|+
T Consensus 652 ----~~~~~a~~~~------v~i~~~~i-----IY~l~d~----------~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~ 706 (787)
T PRK05306 652 ----KARKLAEQEG------VDIRYYSI-----IYDLIDD----------VKAAMSGMLEPEYEEEIIGQAEVREVFKVS 706 (787)
T ss_pred ----HHHHHHHHcC------CEEEEeCh-----HHHHHHH----------HHHHHhhccCchhheeeeeeEEEEEEEecC
Confidence 1222333333 33433221 2232221 3334444333332222222456677884
Q ss_pred cCCeEEEEEEEEeEEecCCEEEEecCCc---EEEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEEEec
Q 016750 192 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 262 (383)
Q Consensus 192 ~~G~vv~G~V~sG~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~ 262 (383)
..|.++.++|..|.|+.|..+.+...+. .-++.||+.+.++|.++..|+-|+|.+.+. .|++.||+|-.
T Consensus 707 k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie~ 778 (787)
T PRK05306 707 KVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIEA 778 (787)
T ss_pred CCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEEE
Confidence 4689999999999999999999998775 457999999999999999999999999966 57999999843
No 345
>PRK12288 GTPase RsgA; Reviewed
Probab=97.67 E-value=0.00019 Score=68.38 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=52.5
Q ss_pred hhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC
Q 016750 51 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 130 (383)
Q Consensus 51 ~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
+.++|.+++|.+...... + ....+++..+...++| .++|+||+|+ .+. ..... .......+...+
T Consensus 118 aANvD~vlIV~s~~p~~s---~---~~Ldr~L~~a~~~~i~-~VIVlNK~DL--~~~--~~~~~-~~~~~~~y~~~g--- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPELS---L---NIIDRYLVACETLGIE-PLIVLNKIDL--LDD--EGRAF-VNEQLDIYRNIG--- 182 (347)
T ss_pred EEEccEEEEEEeCCCCCC---H---HHHHHHHHHHHhcCCC-EEEEEECccC--CCc--HHHHH-HHHHHHHHHhCC---
Confidence 457899999988764321 1 1334455566777888 7789999999 431 11111 222223344444
Q ss_pred CCCceEEEcccccccccccc
Q 016750 131 KKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 131 ~~~~~~i~iSa~~g~~i~~~ 150 (383)
++++++||++++|++++
T Consensus 183 ---~~v~~vSA~tg~GideL 199 (347)
T PRK12288 183 ---YRVLMVSSHTGEGLEEL 199 (347)
T ss_pred ---CeEEEEeCCCCcCHHHH
Confidence 37999999999999884
No 346
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.67 E-value=0.00018 Score=67.92 Aligned_cols=136 Identities=17% Similarity=0.217 Sum_probs=83.0
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCc---cccccccCCchHHHHHHHH--
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAK-- 86 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~---~~~~~~~~~~~~~~~~~~~-- 86 (383)
+.|--|..+....|++++..+.++|++|++...+.+...+..++++++|||.++-- .|... .....+.+....
T Consensus 143 ~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~--~nrl~esl~~f~~i 220 (317)
T cd00066 143 RARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES--TNRMQESLNLFDSI 220 (317)
T ss_pred eeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc--chHHHHHHHHHHHH
Confidence 34556777777788889999999999999999999999999999999999988621 00000 011122222222
Q ss_pred -H----cCCCeEEEEEecCCCCCC------------Ccc--HHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccc
Q 016750 87 -T----LGVTKLLLVVNKMDDHTV------------NWS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 147 (383)
Q Consensus 87 -~----~~i~~~ivviNK~D~~~~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i 147 (383)
. .+.| +++++||.|+... ++. ...++...+.+...+..+.-.....+-...++|..-.++
T Consensus 221 ~~~~~~~~~p-ill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i 299 (317)
T cd00066 221 CNSRWFANTS-IILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENI 299 (317)
T ss_pred HhCccccCCC-EEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHH
Confidence 1 3567 9999999996110 010 123445555555555443211112344455777776666
Q ss_pred ccc
Q 016750 148 KTR 150 (383)
Q Consensus 148 ~~~ 150 (383)
...
T Consensus 300 ~~v 302 (317)
T cd00066 300 RFV 302 (317)
T ss_pred HHH
Confidence 653
No 347
>PRK13796 GTPase YqeH; Provisional
Probab=97.61 E-value=0.0003 Score=67.73 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=57.6
Q ss_pred HHHHHhhhhcC-EEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHH
Q 016750 45 PNMISGASQAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFL 123 (383)
Q Consensus 45 ~~~~~~~~~ad-~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 123 (383)
..++..+..+| .+++|||+.+.. ......+.... .+.| +++|+||+|+...+ ...+.+.+.+..+.
T Consensus 60 ~~~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~-~~kp-viLViNK~DLl~~~---~~~~~i~~~l~~~~ 126 (365)
T PRK13796 60 LKLLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV-GNNP-VLLVGNKADLLPKS---VKKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh-CCCC-EEEEEEchhhCCCc---cCHHHHHHHHHHHH
Confidence 34677777666 999999998732 22333332222 2556 88999999993211 11223444445556
Q ss_pred HhcCCCCCCCceEEEcccccccccccccc
Q 016750 124 KASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 124 ~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+..|+. ...++++||++|.|+.++.+
T Consensus 127 k~~g~~---~~~v~~vSAk~g~gI~eL~~ 152 (365)
T PRK13796 127 KELGLR---PVDVVLISAQKGHGIDELLE 152 (365)
T ss_pred HhcCCC---cCcEEEEECCCCCCHHHHHH
Confidence 666653 12689999999999988543
No 348
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.58 E-value=0.00051 Score=63.68 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=63.5
Q ss_pred cCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-----cCCCeEEE
Q 016750 28 ETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 95 (383)
Q Consensus 28 ~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-----~~i~~~iv 95 (383)
++..|++-|.||.-+ +--.-++-+..+.+.+.|||.+...- .+.-.....+...+.+ .+.| .+|
T Consensus 205 ~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~---~dp~~~~~~i~~EL~~Y~~~L~~K~-~iv 280 (369)
T COG0536 205 GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDG---RDPIEDYQTIRNELEKYSPKLAEKP-RIV 280 (369)
T ss_pred CCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccC---CCHHHHHHHHHHHHHHhhHHhccCc-eEE
Confidence 567799999999521 11122334556789999999985320 0000112222233332 2566 678
Q ss_pred EEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 96 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 96 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
|+||||++. +++++++.++.+... .++ ..++++||.+++|++++..
T Consensus 281 v~NKiD~~~---~~e~~~~~~~~l~~~---~~~-----~~~~~ISa~t~~g~~~L~~ 326 (369)
T COG0536 281 VLNKIDLPL---DEEELEELKKALAEA---LGW-----EVFYLISALTREGLDELLR 326 (369)
T ss_pred EEeccCCCc---CHHHHHHHHHHHHHh---cCC-----CcceeeehhcccCHHHHHH
Confidence 999999632 345555554444332 222 1334499999999999754
No 349
>PRK01889 GTPase RsgA; Reviewed
Probab=97.57 E-value=0.00022 Score=68.36 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=54.2
Q ss_pred hhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC
Q 016750 51 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 130 (383)
Q Consensus 51 ~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
+.++|.+++|+++..+. + .......+..+...+++ .++|+||+|+ ++. .++..+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~~-----~-~~~ldr~L~~a~~~~i~-piIVLNK~DL--~~~----~~~~~~~~~~~--~~---- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHDF-----N-LRRIERYLALAWESGAE-PVIVLTKADL--CED----AEEKIAEVEAL--AP---- 170 (356)
T ss_pred EEeCCEEEEEEecCCCC-----C-hhHHHHHHHHHHHcCCC-EEEEEEChhc--CCC----HHHHHHHHHHh--CC----
Confidence 46889999999997543 2 12445667778889998 6789999999 531 11222333322 22
Q ss_pred CCCceEEEcccccccccccc
Q 016750 131 KKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 131 ~~~~~~i~iSa~~g~~i~~~ 150 (383)
.++++++|+.+|.|++++
T Consensus 171 --g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 171 --GVPVLAVSALDGEGLDVL 188 (356)
T ss_pred --CCcEEEEECCCCccHHHH
Confidence 347999999999998874
No 350
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.47 E-value=0.00062 Score=58.65 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=50.1
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+.+.+.++|||+... ..+..++..+|.+++++..+.... ....+.++.++..+++ +.+++||+|.
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~-------~~~~~~~~~l~~~~~~-~~vV~N~~~~ 155 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGL-------HDLERAVELVRHFGIP-VGVVINKYDL 155 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccH-------HHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 578899999997532 345667889999999999875432 2456677778888887 6789999997
No 351
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.47 E-value=0.00028 Score=67.27 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=63.1
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCC---cccccc-ccCCchHHHHHHHHH
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFETGF-EKGGQTREHVMLAKT 87 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g---~~~~~~-~~~~~~~~~~~~~~~ 87 (383)
+.|-.|.......|.+++..+.++|.+|++.+.+.+...+..++++++|||.++- ..|..- +.-....+.+..+..
T Consensus 166 ~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 166 RSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred heeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 4566777777788899999999999999999999999999999999999999851 000000 000112222222221
Q ss_pred ----cCCCeEEEEEecCCC
Q 016750 88 ----LGVTKLLLVVNKMDD 102 (383)
Q Consensus 88 ----~~i~~~ivviNK~D~ 102 (383)
.+.| +++++||.|+
T Consensus 246 ~~~~~~~p-iil~~NK~D~ 263 (342)
T smart00275 246 SRWFANTS-IILFLNKIDL 263 (342)
T ss_pred CccccCCc-EEEEEecHHh
Confidence 2566 9999999998
No 352
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.46 E-value=0.00028 Score=62.39 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=55.6
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 108 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~ 108 (383)
+..+.|++|.|.-.. ........+..+.|+|+..+.. . ........+.+ .++++||+|+ .+..
T Consensus 102 ~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~---------~--~~~~~~~~~~a-~iiv~NK~Dl--~~~~ 164 (207)
T TIGR00073 102 DIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDD---------K--PLKYPGMFKEA-DLIVINKADL--AEAV 164 (207)
T ss_pred CCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccc---------h--hhhhHhHHhhC-CEEEEEHHHc--cccc
Confidence 457889999992110 0011124566778899876431 1 11122234556 6789999999 4311
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.....+..+.++ ... ...+++++||++|.|+.++
T Consensus 165 ~~~~~~~~~~l~----~~~----~~~~i~~~Sa~~g~gv~~l 198 (207)
T TIGR00073 165 GFDVEKMKADAK----KIN----PEAEIILMSLKTGEGLDEW 198 (207)
T ss_pred hhhHHHHHHHHH----HhC----CCCCEEEEECCCCCCHHHH
Confidence 122233333333 222 1358999999999999984
No 353
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.45 E-value=0.00093 Score=63.98 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=55.6
Q ss_pred ceeeccc---eeeee-c----CcEEEEEeCCCCCC-------------------------hHHH----HHHhhh-hcCEE
Q 016750 16 KTVEVGR---AHFET-E----TTRFTILDAPGHKS-------------------------YVPN----MISGAS-QADIG 57 (383)
Q Consensus 16 ~Ti~~~~---~~~~~-~----~~~i~liDtPG~~~-------------------------~~~~----~~~~~~-~ad~~ 57 (383)
+|.|..+ ..++. . ..++.|+||+|+.+ |... +...+. .+|.+
T Consensus 69 tTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIg 148 (492)
T TIGR02836 69 MTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIG 148 (492)
T ss_pred ccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEE
Confidence 7777777 33332 1 36889999999632 1111 444566 89999
Q ss_pred EEEE-ECCCC-ccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 58 VLVI-SARKG-EFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 58 ilvv-da~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
|+|. |++-+ +...++. ....+.+..++..++| +|+++||.|-
T Consensus 149 ivVtTDgsi~dI~Re~y~--~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 149 VVVTTDGTITDIPREDYV--EAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred EEEEcCCCccccccccch--HHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 9999 87511 1100111 3456678899999999 9999999993
No 354
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.45 E-value=0.00011 Score=61.38 Aligned_cols=105 Identities=22% Similarity=0.163 Sum_probs=71.0
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH--HcCCCeEEEEEecCCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~--~~~i~~~ivviNK~D~~~~ 105 (383)
++..+.+|||+|+++|-.-+..+.+.|.+.+||++.++-.. |+ -+.++.+... ...+| .+++-||+|+ +
T Consensus 67 Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~S---Fe---a~~~w~~kv~~e~~~IP-tV~vqNKIDl--v 137 (246)
T KOG4252|consen 67 EDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYS---FE---ATLEWYNKVQKETERIP-TVFVQNKIDL--V 137 (246)
T ss_pred HHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHH---HH---HHHHHHHHHHHHhccCC-eEEeeccchh--h
Confidence 34566799999999999888899999999999999887432 32 3444433332 34688 7789999999 5
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+.+. . -..++..+.+.+. ..++-+|++...|+...+
T Consensus 138 eds~--~--~~~evE~lak~l~------~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 138 EDSQ--M--DKGEVEGLAKKLH------KRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred Hhhh--c--chHHHHHHHHHhh------hhhhhhhhhhhhhhHHHH
Confidence 4222 1 1122333333332 367889999988887753
No 355
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.43 E-value=0.0002 Score=60.89 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=45.1
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~ 100 (383)
....+.|+||||..+. ...+...+..+|++|+|+++..... .+..+.+........+++|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~-------~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT-------ESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG-------GHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc-------hHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3567999999997442 2445667789999999999998764 2344444444444444588999995
No 356
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.43 E-value=0.0025 Score=58.02 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=52.9
Q ss_pred cceeeccceeeeecCcEEEEEeCCCCCChH------HHHH----Hhhh--hcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 15 GKTVEVGRAHFETETTRFTILDAPGHKSYV------PNMI----SGAS--QADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~~~i~liDtPG~~~~~------~~~~----~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+.|.........+++..++||||||..+.. ...+ ..+. ..|++++|...+..-+ ...+...+
T Consensus 64 ~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~------~~~d~~ll 137 (249)
T cd01853 64 SETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR------DYLDLPLL 137 (249)
T ss_pred CceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC------CHHHHHHH
Confidence 466666666677788999999999987652 1111 1222 5788888875554321 13344555
Q ss_pred HHHHH-cCC---CeEEEEEecCCCC
Q 016750 83 MLAKT-LGV---TKLLLVVNKMDDH 103 (383)
Q Consensus 83 ~~~~~-~~i---~~~ivviNK~D~~ 103 (383)
+.+.. +|. .++|+|+||+|..
T Consensus 138 k~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 138 RAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHhChhhHhCEEEEEeCCccC
Confidence 55544 452 3589999999984
No 357
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00097 Score=55.31 Aligned_cols=82 Identities=21% Similarity=0.181 Sum_probs=61.0
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~ 92 (383)
|...+...+...+-.++-+|..||..-..-...++..+|+++++||+-+... | ...+++++.+. ...+|
T Consensus 51 TlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er---~---~es~~eld~ll~~e~la~vp- 123 (193)
T KOG0077|consen 51 TLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQER---F---AESKKELDALLSDESLATVP- 123 (193)
T ss_pred CcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHH---h---HHHHHHHHHHHhHHHHhcCc-
Confidence 4444555567788899999999998888888888999999999999987432 1 23444444332 24678
Q ss_pred EEEEEecCCCCCC
Q 016750 93 LLLVVNKMDDHTV 105 (383)
Q Consensus 93 ~ivviNK~D~~~~ 105 (383)
+++..||+|.+.+
T Consensus 124 ~lilgnKId~p~a 136 (193)
T KOG0077|consen 124 FLILGNKIDIPYA 136 (193)
T ss_pred ceeecccccCCCc
Confidence 7889999999765
No 358
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.32 E-value=0.00099 Score=61.30 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=59.8
Q ss_pred hhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC
Q 016750 51 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 130 (383)
Q Consensus 51 ~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
..+.|-+++|+++..+.+. .....+.|-.+...|+. -++++||+|+ ++.. .... ++....+..+||
T Consensus 77 v~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~-pvIvlnK~DL--~~~~--~~~~--~~~~~~y~~~gy-- 142 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIE-PVIVLNKIDL--LDDE--EAAV--KELLREYEDIGY-- 142 (301)
T ss_pred ccccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCc-EEEEEEcccc--Ccch--HHHH--HHHHHHHHhCCe--
Confidence 4458899999999988752 23455677788889998 5678999999 5421 1121 455556677775
Q ss_pred CCCceEEEccccccccccccc
Q 016750 131 KKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 131 ~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++.+|++++++++++.
T Consensus 143 ----~v~~~s~~~~~~~~~l~ 159 (301)
T COG1162 143 ----PVLFVSAKNGDGLEELA 159 (301)
T ss_pred ----eEEEecCcCcccHHHHH
Confidence 68999999999998853
No 359
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.016 Score=57.05 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=62.9
Q ss_pred EEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcE---EEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEEE
Q 016750 186 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 260 (383)
Q Consensus 186 I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl 260 (383)
+..+| +..|.++..+|..|.++.|..+.+...+.. -+|.|++.+++++.++.+|+-|++.+++ ..+++.||+|
T Consensus 418 ~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD~l 495 (509)
T COG0532 418 VRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGDIL 495 (509)
T ss_pred EEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCCEE
Confidence 44444 468999999999999999999999865533 5899999999999999999999999996 5668888887
Q ss_pred e
Q 016750 261 S 261 (383)
Q Consensus 261 ~ 261 (383)
-
T Consensus 496 e 496 (509)
T COG0532 496 E 496 (509)
T ss_pred E
Confidence 4
No 360
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.18 E-value=0.0013 Score=63.75 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=63.9
Q ss_pred eeeeecCcEEEEEeCCCCCCh-----HH---HHHHhhh-hcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCC
Q 016750 23 AHFETETTRFTILDAPGHKSY-----VP---NMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVT 91 (383)
Q Consensus 23 ~~~~~~~~~i~liDtPG~~~~-----~~---~~~~~~~-~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~ 91 (383)
.++.+.--.++++||||.-+- +. ..+.++. .--+++++.|.+.-- |++...|.. ...-++.+ +.+
T Consensus 208 GH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C---GySva~Qvk-LfhsIKpLFaNK~ 283 (620)
T KOG1490|consen 208 GHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC---GYSVAAQVK-LYHSIKPLFANKV 283 (620)
T ss_pred hhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh---CCCHHHHHH-HHHHhHHHhcCCc
Confidence 344555567899999996432 11 1223333 345788899987532 222111211 11222322 555
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+|+|+||+|+-.. +.+.+-.+++.+.+..-+ +++++..|+.+.+|+-+.
T Consensus 284 -~IlvlNK~D~m~~----edL~~~~~~ll~~~~~~~-----~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 284 -TILVLNKIDAMRP----EDLDQKNQELLQTIIDDG-----NVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred -eEEEeecccccCc----cccCHHHHHHHHHHHhcc-----CceEEEecccchhceeeH
Confidence 8899999998432 112222233333333332 468999999999998764
No 361
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.18 E-value=0.00085 Score=60.45 Aligned_cols=125 Identities=15% Similarity=0.122 Sum_probs=76.9
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCC----------CChHHHHHHhhh---hcCEEEEEEECCCCccccccccCCchH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGH----------KSYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~----------~~~~~~~~~~~~---~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
..|.|..+.... -+..+.++|.||+ .++.+-+..++. .-=-+.+++|++.++ ++.+.
T Consensus 169 K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i-------~~~D~ 238 (320)
T KOG2486|consen 169 KNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI-------QPTDN 238 (320)
T ss_pred CCccceeeeeee---ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC-------CCCCh
Confidence 556666555433 3678999999993 244444444443 334567889999887 37788
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCC--ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVN--WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..+.++.+.++| +.+|.||||....- ..+.....++..+..+... .| ....+++.+|+.++.|++.+.
T Consensus 239 ~~i~~~ge~~VP-~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~-~f--~~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 239 PEIAWLGENNVP-MTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG-VF--LVDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred HHHHHHhhcCCC-eEEeeehhhhhhhccccccCccccceeehhhcccc-ce--eccCCceeeecccccCceeee
Confidence 899999999999 88999999982100 0000001111111111111 11 114578889999999999864
No 362
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.17 E-value=0.0036 Score=47.78 Aligned_cols=72 Identities=28% Similarity=0.422 Sum_probs=55.0
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC-CccceecCCCCeEEEEEecCCccCc-eeeEE
Q 016750 184 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDI-LSGFV 259 (383)
Q Consensus 184 ~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~g~~~~~i-~~G~v 259 (383)
..|.++- ++.|.+++.-|.+|+|++||.+..+.. ..+|++|... ..++++|.||+.|.+ .|++. + ..|+.
T Consensus 3 g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~--~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~--~P~aGd~ 76 (95)
T cd03702 3 GVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTT--YGKVRAMFDENGKRVKEAGPSTPVEI--LGLKG--VPQAGDK 76 (95)
T ss_pred EEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccc--ccEEEEEECCCCCCCCEECCCCcEEE--cCCCC--CCCCCCE
Confidence 3455554 568999999999999999999999654 4599999876 689999999999985 35432 2 34555
Q ss_pred Ee
Q 016750 260 LS 261 (383)
Q Consensus 260 l~ 261 (383)
+.
T Consensus 77 ~~ 78 (95)
T cd03702 77 FL 78 (95)
T ss_pred EE
Confidence 44
No 363
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.15 E-value=0.0016 Score=57.14 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=56.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 108 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~ 108 (383)
+..+++|.|.|.. ...... -..+|.++.|+|+..+.. .-.+.. ...... =++++||+|+. +..
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~--------~~~~~~---~qi~~a-d~~~~~k~d~~--~~~ 153 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDK--------IPRKGG---PGITRS-DLLVINKIDLA--PMV 153 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhh--------hhhhhH---hHhhhc-cEEEEEhhhcc--ccc
Confidence 4567899999931 111111 123688999999987641 111111 111111 15789999993 211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..+.+.+.+.++.+ +. ..+++++||++|+|++++.
T Consensus 154 ~~~~~~~~~~~~~~----~~----~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 154 GADLGVMERDAKKM----RG----EKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred cccHHHHHHHHHHh----CC----CCCEEEEECCCCCCHHHHH
Confidence 12333334444333 21 3589999999999999843
No 364
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.005 Score=60.53 Aligned_cols=99 Identities=26% Similarity=0.380 Sum_probs=75.1
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCc
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 107 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~ 107 (383)
+.++++|+.+| +-+..|+.-+..||++||+||++-|. + -.|.+.|.++...|.|+++-|++..|+ ..
T Consensus 111 K~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfGf-----E--METmEFLnil~~HGmPrvlgV~ThlDl--fk- 177 (1077)
T COG5192 111 KTRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFGF-----E--METMEFLNILISHGMPRVLGVVTHLDL--FK- 177 (1077)
T ss_pred ceeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccCc-----e--ehHHHHHHHHhhcCCCceEEEEeeccc--cc-
Confidence 56889999999 44567888899999999999999874 3 689999999999999999999999999 33
Q ss_pred cHHHHHHHHHHHHHHH-HhcCCCCCCCceEEEccccc
Q 016750 108 SKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLM 143 (383)
Q Consensus 108 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~iSa~~ 143 (383)
++..+..++..+...+ ..+ |+ ...++.+|+..
T Consensus 178 ~~stLr~~KKrlkhRfWtEi-yq---GaKlFylsgV~ 210 (1077)
T COG5192 178 NPSTLRSIKKRLKHRFWTEI-YQ---GAKLFYLSGVE 210 (1077)
T ss_pred ChHHHHHHHHHHhhhHHHHH-cC---CceEEEecccc
Confidence 3455556666554332 221 22 45778887653
No 365
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.02 E-value=0.0018 Score=43.92 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=26.6
Q ss_pred HHHHhhh-hcCEEEEEEECCCCccccccccCCchHHHHHHHHH-c-CCCeEEEEEecCC
Q 016750 46 NMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVNKMD 101 (383)
Q Consensus 46 ~~~~~~~-~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-~-~i~~~ivviNK~D 101 (383)
.++.+++ .++++++++|.+..- |++...|.. .++.++. + +.| +++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~C---Gysie~Q~~-L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQC---GYSIEEQLS-LFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TT---SS-HHHHHH-HHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCC---CCCHHHHHH-HHHHHHHHcCCCC-EEEEEeccC
Confidence 4556665 789999999998743 332112221 2233333 4 677 999999998
No 366
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.98 E-value=0.0023 Score=54.82 Aligned_cols=40 Identities=25% Similarity=0.149 Sum_probs=29.4
Q ss_pred CEEEEEEECCCCccccccccCCchHHHHHH--HHHcCCCeEEEEEecCCC
Q 016750 55 DIGVLVISARKGEFETGFEKGGQTREHVML--AKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 55 d~~ilvvda~~g~~~~~~~~~~~~~~~~~~--~~~~~i~~~ivviNK~D~ 102 (383)
|++++|+||..+.. ....+..+. +...+.| +|+++||+|+
T Consensus 1 DvVl~VvDar~p~~-------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL 42 (172)
T cd04178 1 DVILEVLDARDPLG-------CRCPQVEEAVLQAGGNKK-LVLVLNKIDL 42 (172)
T ss_pred CEEEEEEECCCCCC-------CCCHHHHHHHHhccCCCC-EEEEEehhhc
Confidence 78999999988753 344455555 3344667 8899999999
No 367
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.92 E-value=0.0058 Score=59.43 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=28.4
Q ss_pred cEEEEEeCCCCC-------ChHHHHHHhhhhcCEEEEEEECC
Q 016750 30 TRFTILDAPGHK-------SYVPNMISGASQADIGVLVISAR 64 (383)
Q Consensus 30 ~~i~liDtPG~~-------~~~~~~~~~~~~ad~~ilvvda~ 64 (383)
.+++|+||||.. .+....+..++.+|++++|||+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 568899999952 24446677899999999999997
No 368
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=96.87 E-value=0.01 Score=44.35 Aligned_cols=74 Identities=15% Similarity=0.279 Sum_probs=49.9
Q ss_pred EEEEEEEEecccc-------c-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECc
Q 016750 272 EFIAQLQILELLD-------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 343 (383)
Q Consensus 272 ~f~a~i~~~~~~~-------~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~ 343 (383)
+++.+..+|+.+- + .+++.|....+++|+..+.++|.++. +|. +++.|.+
T Consensus 3 ~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k--------------------~d~--~~v~L~~ 60 (88)
T PF09173_consen 3 ELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVK--------------------KDM--AEVELKK 60 (88)
T ss_dssp EEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEE--------------------TTE--EEEEEEE
T ss_pred EEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEE--------------------CCE--EEEEecC
Confidence 4555555554331 2 67899999999999999999998753 233 5677889
Q ss_pred eEEeeeccCccccceEEEEeC----CcEEEEEEE
Q 016750 344 SICTEKFADFAQLGRFTLRTE----GKTVAVGKV 373 (383)
Q Consensus 344 pi~~~~~~~~~~lgr~ilr~~----~~tvg~G~V 373 (383)
|+|.+.. .|..|-+. -|.+|+|.|
T Consensus 61 Pvc~~~g------~rvaiSRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 61 PVCAEKG------ERVAISRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEE-STT------SEEEEEEEETTSEEEEEEEEE
T ss_pred CeEcCcC------CeeeeehhccCeEEEEEEEeC
Confidence 9999876 47777443 499999986
No 369
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.82 E-value=0.0018 Score=63.87 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=80.8
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+.|.++++-.|-...-.....++-+.....++||+...+-.......++.||+++++.+.+++.+ ++ .-...++-
T Consensus 30 ~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T---~D--~ist~WLP 104 (625)
T KOG1707|consen 30 LEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDEST---VD--RISTKWLP 104 (625)
T ss_pred HhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHH---hh--hhhhhhhh
Confidence 44556666555444334445566667778999999877766677888999999999998887543 11 22223444
Q ss_pred HHHHc-----CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 84 LAKTL-----GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 84 ~~~~~-----~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++.. ++| +|+|-||+|. .+......+....-+...++.+ -..|.+||++-.|+.++.
T Consensus 105 lir~~~~~~~~~P-VILvGNK~d~--~~~~~~s~e~~~~pim~~f~Ei-------EtciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 105 LIRQLFGDYHETP-VILVGNKSDN--GDNENNSDEVNTLPIMIAFAEI-------ETCIECSALTLANVSELF 167 (625)
T ss_pred hhhcccCCCccCC-EEEEeeccCC--ccccccchhHHHHHHHHHhHHH-------HHHHhhhhhhhhhhHhhh
Confidence 55544 477 9999999998 3322221111111111112211 145678888888877764
No 370
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.80 E-value=0.011 Score=55.03 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=45.9
Q ss_pred eeeeecCcEEEEEeCCCCCChH---HHHHHhhh------hcCEEEEEEECCCCccccccccCCchHHHHHHHHH-cC---
Q 016750 23 AHFETETTRFTILDAPGHKSYV---PNMISGAS------QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG--- 89 (383)
Q Consensus 23 ~~~~~~~~~i~liDtPG~~~~~---~~~~~~~~------~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-~~--- 89 (383)
.....++..+++|||||..+.. ......++ ..|++|+|...+..-+ ...++..++.+.. +|
T Consensus 79 ~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~------~~~DkqlLk~Iqe~FG~~i 152 (313)
T TIGR00991 79 VSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRV------DTLDGQVIRAITDSFGKDI 152 (313)
T ss_pred EEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccC------CHHHHHHHHHHHHHhhhhh
Confidence 3344678999999999987641 12222222 5899999965443211 1244555554443 23
Q ss_pred CCeEEEEEecCCCC
Q 016750 90 VTKLLLVVNKMDDH 103 (383)
Q Consensus 90 i~~~ivviNK~D~~ 103 (383)
..+.||++|+.|..
T Consensus 153 w~~~IVVfTh~d~~ 166 (313)
T TIGR00991 153 WRKSLVVLTHAQFS 166 (313)
T ss_pred hccEEEEEECCccC
Confidence 23589999999973
No 371
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.79 E-value=0.0027 Score=56.41 Aligned_cols=52 Identities=25% Similarity=0.293 Sum_probs=41.1
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 67 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~ 67 (383)
+|.......+++++..++++|.||.-. .-+++++.++.||.+++|.||+...
T Consensus 95 TTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 95 TTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred eEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 455666677888999999999999632 2445677788999999999999853
No 372
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0053 Score=61.77 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=48.0
Q ss_pred EEEEEeCCCC---CChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q 016750 31 RFTILDAPGH---KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 103 (383)
Q Consensus 31 ~i~liDtPG~---~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~ 103 (383)
.+.++|.||. ..+...+.+-...+|+.|||+.|....+ ++..++-..-..+.|+++++.||+|..
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--------~sek~Ff~~vs~~KpniFIlnnkwDas 274 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--------LSEKQFFHKVSEEKPNIFILNNKWDAS 274 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--------HHHHHHHHHhhccCCcEEEEechhhhh
Confidence 6889999996 3455556666679999999999987653 444444333344578899999999984
No 373
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.74 E-value=0.01 Score=52.59 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=60.1
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCC-------hHHHHHHh----hhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKS-------YVPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~----~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
...|..........++..+++|||||..+ ..+++..+ ....|++|||+... ... ...+..+
T Consensus 33 ~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t-------~~~~~~l 104 (212)
T PF04548_consen 33 KSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFT-------EEDREVL 104 (212)
T ss_dssp SS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-S-------HHHHHHH
T ss_pred CCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cch-------HHHHHHH
Confidence 34666666667788999999999999643 23333332 23689999999987 332 3555566
Q ss_pred HHHHH-cC---CCeEEEEEecCCCCCCCccHHHHHHHH-HHHHHHHHhcC
Q 016750 83 MLAKT-LG---VTKLLLVVNKMDDHTVNWSKERYDEIE-SKMTPFLKASG 127 (383)
Q Consensus 83 ~~~~~-~~---i~~~ivviNK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (383)
..+.. +| .+++||++|..|....+.-++-+.... ..++++++.++
T Consensus 105 ~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 105 ELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 55543 34 346889999998732211111111111 34677777776
No 374
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.69 E-value=0.016 Score=45.23 Aligned_cols=74 Identities=22% Similarity=0.357 Sum_probs=55.9
Q ss_pred EEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC--cEEEEEEEEECCc-----------cceecCCCCeEEEEEecC
Q 016750 185 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDN-----------RVRHAGPGENLRIRLSGI 249 (383)
Q Consensus 185 ~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~--~~~~V~sI~~~~~-----------~v~~a~aG~~v~l~l~g~ 249 (383)
.|.++- ++.|.++..-|++|+|++||.+.++... ...+||++...+. ++++|.|..-+-+...|+
T Consensus 4 tVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~gL 83 (110)
T cd03703 4 TVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPDL 83 (110)
T ss_pred EEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCCC
Confidence 455553 6899999999999999999999998765 3468999987743 888988777666656666
Q ss_pred CccCceeeEEE
Q 016750 250 EEEDILSGFVL 260 (383)
Q Consensus 250 ~~~~i~~G~vl 260 (383)
+. +..|+-+
T Consensus 84 ~~--v~aG~~~ 92 (110)
T cd03703 84 EK--AIAGSPL 92 (110)
T ss_pred cc--ccCCCEE
Confidence 54 4556544
No 375
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.0024 Score=54.17 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=67.9
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-cCCCeEEEEEecCCCCCCCcc
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 108 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-~~i~~~ivviNK~D~~~~~~~ 108 (383)
.+|..|||.|++.|....-.+.=.+-+|++++|...-.+- . .-.+-|-..++. .++| ++++.||.|...
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~---~--n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~---- 128 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTY---K--NVPRWHRDLVRVRENIP-IVLCGNKVDIKA---- 128 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhhh---h--cchHHHHHHHHHhcCCC-eeeeccceeccc----
Confidence 6789999999999876655556678899999998865542 1 222333334433 3578 999999999721
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+. .+. +.+.+...++...+.+||++.-|.+.+.
T Consensus 129 --r~--~k~------k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 129 --RK--VKA------KPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred --cc--ccc------ccceeeecccceeEEeecccccccccch
Confidence 11 111 1222222346789999999999988753
No 376
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.65 E-value=0.047 Score=55.86 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=59.5
Q ss_pred EEEc-cCCeEEEEEEEEeEEecCCEEEEecCC-cEEEEEEEEECCccceecCCCCeEEEEEecCC-ccCceeeEEEecC
Q 016750 188 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSSV 263 (383)
Q Consensus 188 ~~~~-~~G~vv~G~V~sG~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~-~~~i~~G~vl~~~ 263 (383)
.+|+ ..+.++..+|..|.|+.|..|. .+.+ ..-+|.||+.+++++++|..|+-|++.+.+.. ..+++.||+|-..
T Consensus 473 ~vf~~~~~~i~G~~V~~G~i~~~~~v~-r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~~ 550 (590)
T TIGR00491 473 LVFRQSKPAIVGVEVLTGVIRQGYPLM-KDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYVD 550 (590)
T ss_pred eeeeCCCCeEEEEEEecCEEecCCeEE-ecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEEe
Confidence 4563 3578899999999999999874 3333 34589999999999999999999999998742 1568889988654
No 377
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.62 E-value=0.017 Score=44.18 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=48.0
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC-CccceecCCCCeEE
Q 016750 184 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLR 243 (383)
Q Consensus 184 ~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~ 243 (383)
..|.++- ++.|.+++.-|.+|+|++||.+..+ ....+|+++... ++.+.+|.|++.|.
T Consensus 3 g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G--~~~GkVr~~~d~~g~~v~~a~Ps~~v~ 63 (95)
T cd03701 3 GTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAG--GTYGKIRTMVDENGKALLEAGPSTPVE 63 (95)
T ss_pred EEEEEEEecCCCCeeEEEEEEcCeEecCCEEEEC--CccceEEEEECCCCCCccccCCCCCEE
Confidence 3455554 5789999999999999999999995 445689998765 78899999999985
No 378
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.01 Score=55.62 Aligned_cols=68 Identities=24% Similarity=0.272 Sum_probs=50.9
Q ss_pred cEEEEEeCCCC-----------CChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe
Q 016750 30 TRFTILDAPGH-----------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 98 (383)
Q Consensus 30 ~~i~liDtPG~-----------~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN 98 (383)
.+++++||||. .+|......-+..+|.++|++|+..=. + .....+.+..++-..-+ +-||+|
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD----I--sdEf~~vi~aLkG~Edk-iRVVLN 219 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD----I--SDEFKRVIDALKGHEDK-IRVVLN 219 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc----c--cHHHHHHHHHhhCCcce-eEEEec
Confidence 36899999995 256666666678999999999997522 1 25677788777766544 778999
Q ss_pred cCCCCCCC
Q 016750 99 KMDDHTVN 106 (383)
Q Consensus 99 K~D~~~~~ 106 (383)
|.|. ++
T Consensus 220 KADq--Vd 225 (532)
T KOG1954|consen 220 KADQ--VD 225 (532)
T ss_pred cccc--cC
Confidence 9999 64
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.51 E-value=0.017 Score=53.37 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=54.7
Q ss_pred cCcEEEEEeCCCCCChHHHHH-------Hhhh-----hcCEEEEEEECCCCccccccccCCchHHHH-HHHHHcCCCeEE
Q 016750 28 ETTRFTILDAPGHKSYVPNMI-------SGAS-----QADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLL 94 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~-------~~~~-----~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~i 94 (383)
.++.+.||||||........+ .... .+|..+||+|++.+. ...... ...+..++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~-g- 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT-G- 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC-E-
Confidence 568899999999765433322 1221 389999999998652 233333 333345665 3
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 95 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 95 vviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++||+|... ++-.+.+.. ...+ .|+..++ +|++++++
T Consensus 222 ~IlTKlDe~~------~~G~~l~~~----~~~~------~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 222 IILTKLDGTA------KGGIILSIA----YELK------LPIKFIG--VGEKIDDL 259 (272)
T ss_pred EEEEccCCCC------CccHHHHHH----HHHC------cCEEEEe--CCCChHhC
Confidence 5799999731 122222222 1222 3566666 68887664
No 380
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.45 E-value=0.021 Score=46.98 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=44.2
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc-CCCeEEEEEecCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDD 102 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~-~i~~~ivviNK~D~ 102 (383)
+.+.++|||+... ......+..+|.++++++++.... ..+...++.+... +..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSI-------TDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHH-------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 6789999998643 344577889999999999875432 2334455555432 33447789999985
No 381
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.43 E-value=0.0077 Score=57.58 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=58.6
Q ss_pred eeecC-cEEEEEeCCCCC--C-----hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEE
Q 016750 25 FETET-TRFTILDAPGHK--S-----YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 96 (383)
Q Consensus 25 ~~~~~-~~i~liDtPG~~--~-----~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivv 96 (383)
|.+.+ ..++|||.||.. + |.+.+ .+...|..|++.+..-. ..+...+..++.+|.+ +.+|
T Consensus 80 Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf~---------~ndv~La~~i~~~gK~-fyfV 147 (376)
T PF05049_consen 80 YPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERFT---------ENDVQLAKEIQRMGKK-FYFV 147 (376)
T ss_dssp EE-SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----------HHHHHHHHHHHHTT-E-EEEE
T ss_pred CCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCCc---------hhhHHHHHHHHHcCCc-EEEE
Confidence 44433 469999999963 2 33322 46688987776654322 3455667888899988 9999
Q ss_pred EecCCCC--------CCCccHH-HHHHHHHHHHHHHHhcCCCCCCCceEEEccccccc
Q 016750 97 VNKMDDH--------TVNWSKE-RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL 145 (383)
Q Consensus 97 iNK~D~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~ 145 (383)
-||+|.. +..++++ -++++.+...+.|+..|.. ..+++-+|...-.
T Consensus 148 RTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~---~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 148 RTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS---EPQVFLVSSFDLS 202 (376)
T ss_dssp E--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S---S--EEEB-TTTTT
T ss_pred EecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC---cCceEEEeCCCcc
Confidence 9999951 0122222 2456666666777777765 5589999987533
No 382
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.42 E-value=0.0019 Score=54.66 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=76.7
Q ss_pred eeecCc---EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-HH----cC--CCeEE
Q 016750 25 FETETT---RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT----LG--VTKLL 94 (383)
Q Consensus 25 ~~~~~~---~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~----~~--i~~~i 94 (383)
+.|+++ +..|||..|+++|-..+.-+.+.|.++.+|+|.+.... |+ .+....+.+ .. .| +| ++
T Consensus 67 l~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~t---fe---~~skwkqdldsk~qLpng~Pv~-~v 139 (229)
T KOG4423|consen 67 LQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLT---FE---PVSKWKQDLDSKLQLPNGTPVP-CV 139 (229)
T ss_pred hccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEcccccc---cc---HHHHHHHhccCcccCCCCCcch-he
Confidence 455554 45799999999998877788899999999999987653 22 121111111 11 12 44 77
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 95 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 95 vviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+..||+|. . +....+.-..+..+.+..||. .+..+|++...|+.+..
T Consensus 140 llankCd~--e---~~a~~~~~~~~d~f~kengf~-----gwtets~Kenkni~Ea~ 186 (229)
T KOG4423|consen 140 LLANKCDQ--E---KSAKNEATRQFDNFKKENGFE-----GWTETSAKENKNIPEAQ 186 (229)
T ss_pred eccchhcc--C---hHhhhhhHHHHHHHHhccCcc-----ceeeeccccccChhHHH
Confidence 88999998 3 233344456677788888876 68999999999999854
No 383
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.41 E-value=0.023 Score=53.71 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=81.9
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH---HHHHHH-
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH---VMLAKT- 87 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~---~~~~~~- 87 (383)
+.|--|..+....|+.++..+-++|++|++.=.+.++..+..++++||+++.++=-. -.++ ...+-+. +.+-..
T Consensus 177 ~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq-~l~E-D~~~NRM~eS~~LF~sI 254 (354)
T KOG0082|consen 177 RSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQ-VLEE-DETTNRMHESLKLFESI 254 (354)
T ss_pred hhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhh-hccc-ccchhHHHHHHHHHHHH
Confidence 456678888888999999999999999999888899999999999999999875110 0000 1122222 222211
Q ss_pred ------cCCCeEEEEEecCCCCCC------------Ccc-HHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccc
Q 016750 88 ------LGVTKLLLVVNKMDDHTV------------NWS-KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 148 (383)
Q Consensus 88 ------~~i~~~ivviNK~D~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~ 148 (383)
.+.+ +|+++||.|+-.. ++. ...+++....+...++.+.-...+..-...++|..-.|+.
T Consensus 255 ~n~~~F~~ts-iiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~ 333 (354)
T KOG0082|consen 255 CNNKWFANTS-IILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQ 333 (354)
T ss_pred hcCcccccCc-EEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHH
Confidence 1344 9999999999100 000 0123445555555555444331112223334666666665
Q ss_pred cc
Q 016750 149 TR 150 (383)
Q Consensus 149 ~~ 150 (383)
..
T Consensus 334 ~v 335 (354)
T KOG0082|consen 334 FV 335 (354)
T ss_pred HH
Confidence 53
No 384
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.35 E-value=0.023 Score=53.57 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=54.6
Q ss_pred cCcEEEEEeCCCCCCh----HHHHH---Hhh-----hhcCEEEEEEECCCCccccccccCCchHHHH-HHHHHcCCCeEE
Q 016750 28 ETTRFTILDAPGHKSY----VPNMI---SGA-----SQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLL 94 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~---~~~-----~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~i 94 (383)
.++.+.||||||.... +.++. ..+ ..++..+||+||+.+- ...... ...+..++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 5678999999996542 22222 222 2478899999999753 222222 223344554 3
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 95 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 95 vviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++||+|.. . +.-.+.+.+ ...+ .|+..++ +|++++++
T Consensus 264 iIlTKlD~t-~-----~~G~~l~~~----~~~~------~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGT-A-----KGGVVFAIA----DELG------IPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCC-C-----CccHHHHHH----HHHC------CCEEEEe--CCCChhhC
Confidence 679999973 1 122333322 2223 3677777 78888775
No 385
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.33 E-value=0.022 Score=48.67 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=46.9
Q ss_pred EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 31 ~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+.++|||+.... .+..++..+|.+|+++++..... ..+...++.++..+.+.+.+++|++|.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSL-------RDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchH-------HHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7999999986443 45667889999999999876432 244455666666666667789999986
No 386
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.20 E-value=0.005 Score=54.37 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=49.2
Q ss_pred ecCcEEEEEeC-CCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 27 TETTRFTILDA-PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 27 ~~~~~i~liDt-PG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+.+.+.++|| +|.+-|-+.+ ...+|.+|+|+|.+.... ...++.-+++..++++++.+++||+|.
T Consensus 131 ~~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 131 LNRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred cccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 34578899999 5666665443 346899999999886542 244556677888997789999999996
No 387
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.04 E-value=0.025 Score=53.66 Aligned_cols=62 Identities=27% Similarity=0.274 Sum_probs=42.1
Q ss_pred EEeCCCCC-ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-HHcCCCeEEEEEecCCC
Q 016750 34 ILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 34 liDtPG~~-~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~~~i~~~ivviNK~D~ 102 (383)
-.|-+++. .|.++...-+..+|++|-|+||.++.. ..-.+.-++. ...|-+++|+|+||+|+
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlg-------tR~~~vE~~V~~~~gnKkLILVLNK~DL 189 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLG-------TRCPEVEEAVLQAHGNKKLILVLNKIDL 189 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCC-------CCChhHHHHHHhccCCceEEEEeehhcc
Confidence 34444543 467777788889999999999999862 1222222222 24454569999999999
No 388
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.03 E-value=0.0074 Score=55.73 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=31.4
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
-++++||+|+ +++.....+...+.++. +. ...+++++|+++|+|++++
T Consensus 233 DIVVLNKiDL--l~~~~~dle~~~~~lr~----ln----p~a~I~~vSA~tGeGld~L 280 (290)
T PRK10463 233 SLMLLNKVDL--LPYLNFDVEKCIACARE----VN----PEIEIILISATSGEGMDQW 280 (290)
T ss_pred cEEEEEhHHc--CcccHHHHHHHHHHHHh----hC----CCCcEEEEECCCCCCHHHH
Confidence 3679999999 54222233444444333 22 1358999999999999984
No 389
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=96.02 E-value=0.059 Score=44.29 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=60.0
Q ss_pred cEEEEEeCCCCCChHH-HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHH----cCCCeEEEEEecCCCC
Q 016750 30 TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT----LGVTKLLLVVNKMDDH 103 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~-~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~----~~i~~~ivviNK~D~~ 103 (383)
.++.|.||.|..+.-. .-..++..+|+.+||.|..+... | |-.+.+ ..+.+ ..+| ++|..||.|+
T Consensus 60 E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS---f----~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr- 130 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES---F----QRVELLKKEIDKHKDKKEVP-IVVLANKRDR- 130 (198)
T ss_pred heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH---H----HHHHHHHHHHhhcccccccc-EEEEechhhc-
Confidence 4788999999988833 34567889999999999887542 2 222222 22222 2466 8889999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~ 149 (383)
++ +.+.+ .+..+...++ +.+....+++..-..+.+
T Consensus 131 -~~--p~~vd--~d~A~~Wa~r------Ekvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 131 -AE--PREVD--MDVAQIWAKR------EKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred -cc--chhcC--HHHHHHHHhh------hheeEEEEEeccchhhhh
Confidence 32 11111 1111222221 235677888876555544
No 390
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.99 E-value=0.025 Score=48.10 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=48.5
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhh--hhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+++.+.++|||+.-. ......+ ..+|.+++|+.+..... ....+.++.++..+.+.+-+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVAL-------DDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhH-------HHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 578899999999632 2233333 57899999998765332 466777888888898866688999985
No 391
>PRK14974 cell division protein FtsY; Provisional
Probab=95.98 E-value=0.037 Score=52.52 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=55.8
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHh--hhhcCEEEEEEECCCCccccccccCCchHHHHHH-HHHcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVML-AKTLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~--~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~-~~~~~i~~~ivviNK~ 100 (383)
.++.+.||||||.... +.++..- ...+|..+||+|+..|- ...+.+.. ....++. - +++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---------d~~~~a~~f~~~~~~~-g-iIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---------DAVEQAREFNEAVGID-G-VILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---------hHHHHHHHHHhcCCCC-E-EEEeee
Confidence 4567999999997543 3333222 23589999999997752 23333332 2346776 3 579999
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 101 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 101 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|... +.-.+.+... ..+ .|+.+++ +|++++++
T Consensus 290 D~~~------~~G~~ls~~~----~~~------~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 290 DADA------KGGAALSIAY----VIG------KPILFLG--VGQGYDDL 321 (336)
T ss_pred cCCC------CccHHHHHHH----HHC------cCEEEEe--CCCChhhc
Confidence 9831 1222322222 122 3677776 69998774
No 392
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.93 E-value=0.012 Score=57.24 Aligned_cols=89 Identities=21% Similarity=0.343 Sum_probs=58.5
Q ss_pred Hhhcceeeccceeeee-cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCcccccccc--CCchHHHHHHHHH-
Q 016750 12 RIKGKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEK--GGQTREHVMLAKT- 87 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~--~~~~~~~~~~~~~- 87 (383)
+-|..|..+....|.. ++..+.++|+.|++.-.+.++..+..++++|+||+.++=- ...++. .....+-+.+...
T Consensus 217 ~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~yd-q~~~ed~~~nrl~esl~lF~~i 295 (389)
T PF00503_consen 217 RCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYD-QTLYEDPNTNRLHESLNLFESI 295 (389)
T ss_dssp HS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGG-SBESSSTTSBHHHHHHHHHHHH
T ss_pred eecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchh-hhhcccchHHHHHHHHHHHHHH
Confidence 3456777777888888 9999999999999988889999999999999999976410 000110 0112222332222
Q ss_pred -----c-CCCeEEEEEecCCC
Q 016750 88 -----L-GVTKLLLVVNKMDD 102 (383)
Q Consensus 88 -----~-~i~~~ivviNK~D~ 102 (383)
+ +.+ +|+++||+|+
T Consensus 296 ~~~~~~~~~~-iil~lnK~D~ 315 (389)
T PF00503_consen 296 CNNPWFKNTP-IILFLNKIDL 315 (389)
T ss_dssp HTSGGGTTSE-EEEEEE-HHH
T ss_pred HhCcccccCc-eEEeeecHHH
Confidence 1 354 9999999997
No 393
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=95.88 E-value=0.017 Score=53.38 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=71.0
Q ss_pred eeeccceeeee-cCcEEEEEeCCCCCC-h-------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH
Q 016750 17 TVEVGRAHFET-ETTRFTILDAPGHKS-Y-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT 87 (383)
Q Consensus 17 Ti~~~~~~~~~-~~~~i~liDtPG~~~-~-------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~ 87 (383)
|.|........ ++..+.|.||-|+-. + ...++.-...+|+++-|+|.+.+..| .|....+..++.
T Consensus 212 TLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae------~q~e~Vl~vL~~ 285 (410)
T KOG0410|consen 212 TLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE------EQRETVLHVLNQ 285 (410)
T ss_pred eccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH------HHHHHHHHHHHh
Confidence 44444444333 577889999999643 2 23344445689999999999988643 566677788888
Q ss_pred cCCC------eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 LGVT------KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 ~~i~------~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+|+| .+|=|=||+|..... .+ ....-.+++|+++|.|++++.
T Consensus 286 igv~~~pkl~~mieVdnkiD~e~~~-~e---------------------~E~n~~v~isaltgdgl~el~ 333 (410)
T KOG0410|consen 286 IGVPSEPKLQNMIEVDNKIDYEEDE-VE---------------------EEKNLDVGISALTGDGLEELL 333 (410)
T ss_pred cCCCcHHHHhHHHhhcccccccccc-Cc---------------------cccCCccccccccCccHHHHH
Confidence 8886 245566888873211 00 011237899999999999843
No 394
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.81 E-value=0.014 Score=50.22 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=53.5
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcC-EEEEEEECCCCccccccccCCchHH-HHHHHHHcCCCeEEEEEecCCCCCCCc
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTRE-HVMLAKTLGVTKLLLVVNKMDDHTVNW 107 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad-~~ilvvda~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~~ivviNK~D~~~~~~ 107 (383)
..+.||-..| ++... ......| .-|+|+|...|.- .-+. +--+. .- =++||||.|+ +++
T Consensus 97 ~Dll~iEs~G--NL~~~--~sp~L~d~~~v~VidvteGe~--------~P~K~gP~i~---~a--DllVInK~DL--a~~ 157 (202)
T COG0378 97 LDLLFIESVG--NLVCP--FSPDLGDHLRVVVIDVTEGED--------IPRKGGPGIF---KA--DLLVINKTDL--APY 157 (202)
T ss_pred CCEEEEecCc--ceecc--cCcchhhceEEEEEECCCCCC--------CcccCCCcee---Ee--eEEEEehHHh--HHH
Confidence 4677888888 33221 1223445 8999999998852 1111 00000 11 2578999999 432
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 108 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
-....+...+. .+++. .+.+|+.+|+++|+|+++.
T Consensus 158 v~~dlevm~~d----a~~~n----p~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 158 VGADLEVMARD----AKEVN----PEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred hCccHHHHHHH----HHHhC----CCCCEEEEeCCCCcCHHHH
Confidence 11112222222 23322 2569999999999999984
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.81 E-value=0.033 Score=54.48 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=41.2
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHh--hhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~--~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~ivviNK~ 100 (383)
.++.+.||||||.... +.++... ...+|-++||+||..|- .....+.... ..++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCCc--EEEEECc
Confidence 3678999999996543 3333332 23578999999998762 2233333332 34554 3579999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|.
T Consensus 250 D~ 251 (429)
T TIGR01425 250 DG 251 (429)
T ss_pred cC
Confidence 97
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.73 E-value=0.034 Score=48.66 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=42.8
Q ss_pred cCcEEEEEeCCCCCChHH----HHHHh--hhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSYVP----NMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~----~~~~~--~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
++..+.||||||...+.. ++..- ....+-++||+||+.+. ..........+..++..+ ++||+|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~~l--IlTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGIDGL--ILTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTCEE--EEESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--------HHHHHHHHHhhcccCceE--EEEeec
Confidence 457899999999765533 22222 22578999999998763 233344455566778743 599999
Q ss_pred C
Q 016750 102 D 102 (383)
Q Consensus 102 ~ 102 (383)
.
T Consensus 152 e 152 (196)
T PF00448_consen 152 E 152 (196)
T ss_dssp S
T ss_pred C
Confidence 8
No 397
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.70 E-value=0.034 Score=43.40 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=43.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCC---eEEEEEec
Q 016750 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNK 99 (383)
Q Consensus 31 ~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~---~~ivviNK 99 (383)
.+.++|||+.... .....+..+|.++++++.+.... ....+.++.++..+.+ ++.+++|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSI-------RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHH-------HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999997543 34567889999999999876432 3455666667676643 57788886
No 398
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.64 E-value=0.0076 Score=53.84 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=39.4
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 67 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~ 67 (383)
+|.........+++-++.+.|.||.-+ .-+++++.++.++.+++|.|...+.
T Consensus 92 ttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 92 TTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred eeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 444444455567888999999999632 3456677788999999999998875
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.55 E-value=0.057 Score=46.03 Aligned_cols=64 Identities=22% Similarity=0.373 Sum_probs=40.6
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHhh--hhcCEEEEEEECCCCccccccccCCchHHHH-HHHHHcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~ivviNK~ 100 (383)
.++.+.++||||...+ +..+.... ...|.+++|+|+..+. ...+.+ ...+..++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 4667899999998643 33332222 2489999999996542 233333 334455654 3568999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|.
T Consensus 150 D~ 151 (173)
T cd03115 150 DG 151 (173)
T ss_pred cC
Confidence 98
No 400
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=95.40 E-value=0.054 Score=48.60 Aligned_cols=106 Identities=17% Similarity=0.285 Sum_probs=72.1
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccC---CchHHHHHHHHHc
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKG---GQTREHVMLAKTL 88 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~---~~~~~~~~~~~~~ 88 (383)
|-|-+|..+....|..+..+|...|..|++|-...+++.+...-++|+|+.++.--+. +... ...+|.|.+.+..
T Consensus 184 rcRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~v--lrED~~qNRL~EaL~LFksi 261 (379)
T KOG0099|consen 184 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMV--LREDNQQNRLQEALNLFKSI 261 (379)
T ss_pred HhhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhh--hhcCCchhHHHHHHHHHHHH
Confidence 4567787777888888999999999999999999999999999999999998752110 0001 1223444333321
Q ss_pred -------CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHh
Q 016750 89 -------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKA 125 (383)
Q Consensus 89 -------~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~ 125 (383)
.+. +|+++||-|+ . .+....=+..+.+++..
T Consensus 262 WnNRwL~tis-vIlFLNKqDl--l---aeKi~Agk~~i~dyFpE 299 (379)
T KOG0099|consen 262 WNNRWLRTIS-VILFLNKQDL--L---AEKILAGKSKIEDYFPE 299 (379)
T ss_pred HhhhHHhhhh-eeEEecHHHH--H---HHHHHcchhhHHHhChH
Confidence 344 8899999998 2 23333444445555544
No 401
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.40 E-value=0.15 Score=46.06 Aligned_cols=103 Identities=20% Similarity=0.166 Sum_probs=60.5
Q ss_pred eecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH--HHHHHHHHcCCCeEEEEEecCCCC
Q 016750 26 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR--EHVMLAKTLGVTKLLLVVNKMDDH 103 (383)
Q Consensus 26 ~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~--~~~~~~~~~~i~~~ivviNK~D~~ 103 (383)
+.-++.+.||-|-|.-.-- ..-...+|..++|+-...|-. -|.. -.+++ .. |+|+||.|++
T Consensus 118 ~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~-------iQ~~KaGimEi------aD-i~vVNKaD~~ 180 (266)
T PF03308_consen 118 DAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDE-------IQAIKAGIMEI------AD-IFVVNKADRP 180 (266)
T ss_dssp HHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCC-------CCTB-TTHHHH-------S-EEEEE--SHH
T ss_pred HHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccH-------HHHHhhhhhhh------cc-EEEEeCCChH
Confidence 3457889999999854322 223567999999999877642 2222 22232 22 4789999984
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCC-CCCceEEEcccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+ -+....+++..+....-.. .-..+++.+||.+|.|++++.+
T Consensus 181 g-------A~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 181 G-------ADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp H-------HHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHH
T ss_pred H-------HHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 3 2344555555554332110 0024899999999999999643
No 402
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.29 E-value=0.088 Score=53.98 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=57.3
Q ss_pred EEEc-cCCeEEEEEEEEeEEecCCEEEEecCC-cEEEEEEEEECCccceecCCCCeEEEEEecCCc-cCceeeEEEec
Q 016750 188 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEE-EDILSGFVLSS 262 (383)
Q Consensus 188 ~~~~-~~G~vv~G~V~sG~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~-~~i~~G~vl~~ 262 (383)
.+|+ ..+.++..+|..|.|+.|..|. .+.+ ..-+|.||+.++++|++|..|+-|++.+.+..- .+++.||+|-.
T Consensus 475 ~vf~~~~~~IaGc~V~~G~i~~~~~v~-r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSDPAIVGVEVLGGTIKPGVPLI-KEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCCCeEEEEEEEeCEEecCCEEE-EECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 4563 3578899999999999999854 3233 335799999999999999999999999986421 46778887754
No 403
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=95.23 E-value=0.074 Score=46.69 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=47.7
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
..+.+.|+|||...... .....+..+|.+|+|+++..... ....+.++.++..+.+.+-+|+||.|.
T Consensus 126 ~~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~~~~-------~~~~~~~~~l~~~~~~~~gvVlN~~~~ 192 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGEIKK-------RDVQKAKEQLEQTGSNFLGVVLNKVDI 192 (204)
T ss_pred hcCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCCCCH-------HHHHHHHHHHHhCCCCEEEEEEeCccc
Confidence 45789999999843221 22233457899999999975432 355666777888888767789999997
No 404
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.17 E-value=0.076 Score=48.08 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=49.6
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
..+.+||+|-- --..+++++..+|+||+|...+.- |+ ...++.++.++.+++| ..+++||-++
T Consensus 164 ~~~~IIDsaaG--~gCpVi~sl~~aD~ai~VTEPTp~----gl---hD~kr~~el~~~f~ip-~~iViNr~~~ 226 (284)
T COG1149 164 ADLLIIDSAAG--TGCPVIASLKGADLAILVTEPTPF----GL---HDLKRALELVEHFGIP-TGIVINRYNL 226 (284)
T ss_pred cceeEEecCCC--CCChHHHhhccCCEEEEEecCCcc----ch---hHHHHHHHHHHHhCCc-eEEEEecCCC
Confidence 47899999852 224678899999999999977652 22 3677788999999999 6679999976
No 405
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.15 E-value=0.051 Score=45.27 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=38.3
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
.++.+.||||||.. ......+..||.+++|+....+ ..... .....+..-. ++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~----------D~y~~-~k~~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG----------DDIQA-IKAGIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch----------hHHHH-hhhhHhhhcC-EEEEeCCC
Confidence 46789999999964 3345688899999999977532 11111 2222233333 47899998
No 406
>PHA02518 ParA-like protein; Provisional
Probab=95.07 E-value=0.15 Score=44.82 Aligned_cols=69 Identities=10% Similarity=0.165 Sum_probs=42.5
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~ 102 (383)
+.+.+.||||||... ..+..++..+|.+|+++..+.-.. ....+..+.+..+... +.+.+.++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~----~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDI----WAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhH----HHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 457899999999743 446678889999999998875322 1001222333332222 45545567787664
No 407
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.06 E-value=0.072 Score=48.20 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=47.7
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+++.+.++|||+... ..+..++..+|.++++++++.... ..+.+..+.+...+.+.+-+++|+.+.
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSI-------TDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchH-------HHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 457899999998654 345667788999999999865432 234445556666777756689999986
No 408
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.96 E-value=0.089 Score=48.37 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=59.4
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~ 106 (383)
--++.+.||-|-|--.-- ..-...+|..++|.=+..|- ..+. ..+-.+.+-. |+||||.|+.+++
T Consensus 141 AaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD----------~~Q~-iK~GimEiaD-i~vINKaD~~~A~ 205 (323)
T COG1703 141 AAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGD----------DLQG-IKAGIMEIAD-IIVINKADRKGAE 205 (323)
T ss_pred hcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCc----------HHHH-HHhhhhhhhh-eeeEeccChhhHH
Confidence 357788888888853221 12245689999988765542 1111 1122223322 5789999984432
Q ss_pred ccHHHHHHHHHHHHHH---HHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..+.++...+... ....+|. .+++.+||.+|+|++++.+
T Consensus 206 ---~a~r~l~~al~~~~~~~~~~~W~----ppv~~t~A~~g~Gi~~L~~ 247 (323)
T COG1703 206 ---KAARELRSALDLLREVWRENGWR----PPVVTTSALEGEGIDELWD 247 (323)
T ss_pred ---HHHHHHHHHHHhhcccccccCCC----CceeEeeeccCCCHHHHHH
Confidence 2222333322222 2233343 4899999999999999654
No 409
>PTZ00258 GTP-binding protein; Provisional
Probab=94.72 E-value=0.063 Score=51.92 Aligned_cols=51 Identities=18% Similarity=0.090 Sum_probs=39.1
Q ss_pred hcceeeccceeeeecC-----------------cEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECC
Q 016750 14 KGKTVEVGRAHFETET-----------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISAR 64 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~-----------------~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~ 64 (383)
.++|++.....+.+.+ .++.|+||||..+ +....+..++.+|++++|||+.
T Consensus 52 pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 52 PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4678887777766543 3599999999532 4556677889999999999985
No 410
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=94.59 E-value=0.58 Score=43.39 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=59.5
Q ss_pred hhcceeeccceeeeecC--cEEEEEeCCCCCChH-------------HHH-HHhh-------------hhcCEEEEEEEC
Q 016750 13 IKGKTVEVGRAHFETET--TRFTILDAPGHKSYV-------------PNM-ISGA-------------SQADIGVLVISA 63 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~-------------~~~-~~~~-------------~~ad~~ilvvda 63 (383)
.+..++......++.++ ..++++||||+.+.+ ..- ...+ ...|++|+.+++
T Consensus 44 ~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~p 123 (281)
T PF00735_consen 44 SRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPP 123 (281)
T ss_dssp -SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-T
T ss_pred ccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcC
Confidence 34445554444444443 367899999976421 100 0011 136899999998
Q ss_pred CC-CccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 016750 64 RK-GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 129 (383)
Q Consensus 64 ~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (383)
+. +.. +.+.+.++.+... ++ +|-||.|.|. . ..+++...++.+...++..++.
T Consensus 124 t~~~L~-------~~Di~~mk~Ls~~-vN-vIPvIaKaD~--l--t~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 124 TGHGLK-------PLDIEFMKRLSKR-VN-VIPVIAKADT--L--TPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp TSSSS--------HHHHHHHHHHTTT-SE-EEEEESTGGG--S---HHHHHHHHHHHHHHHHHTT--
T ss_pred CCccch-------HHHHHHHHHhccc-cc-EEeEEecccc--c--CHHHHHHHHHHHHHHHHHcCce
Confidence 74 331 3444444444332 44 8999999998 3 3577888888888888876643
No 411
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.58 E-value=0.18 Score=49.53 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=49.1
Q ss_pred HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHH
Q 016750 45 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK 124 (383)
Q Consensus 45 ~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~ 124 (383)
++.-+-+..+|+++.+|||..+.+ |- .+.......... .-++.++++||.|| .. + +......+++.
T Consensus 166 RQLWRVlErSDivvqIVDARnPll---fr-~~dLe~Yvke~d--~~K~~~LLvNKaDL--l~--~----~qr~aWa~YF~ 231 (562)
T KOG1424|consen 166 RQLWRVLERSDIVVQIVDARNPLL---FR-SPDLEDYVKEVD--PSKANVLLVNKADL--LP--P----EQRVAWAEYFR 231 (562)
T ss_pred HHHHHHHhhcceEEEEeecCCccc---cC-ChhHHHHHhccc--cccceEEEEehhhc--CC--H----HHHHHHHHHHH
Confidence 444556778999999999999885 22 122222222222 22347789999999 42 2 33344455555
Q ss_pred hcCCCCCCCceEEEccccc
Q 016750 125 ASGYNVKKDVQFLPISGLM 143 (383)
Q Consensus 125 ~~~~~~~~~~~~i~iSa~~ 143 (383)
.- +++++.-||+.
T Consensus 232 ~~------ni~~vf~SA~~ 244 (562)
T KOG1424|consen 232 QN------NIPVVFFSALA 244 (562)
T ss_pred hc------CceEEEEeccc
Confidence 43 46889899886
No 412
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=94.58 E-value=0.77 Score=47.27 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=44.2
Q ss_pred EEEEEEEEeEEecCCEEEEecCC--cEEEEEEEEECCccceecCCCCeEEEEEec
Q 016750 196 VVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSG 248 (383)
Q Consensus 196 vv~G~V~sG~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g 248 (383)
|+...|..|+|+.|..+.+.... .--+|.||+++|++|+.|.-|+-|++.|.+
T Consensus 953 v~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 953 VLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred EEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 45568999999999998875433 234899999999999999999999988774
No 413
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.56 E-value=0.12 Score=48.88 Aligned_cols=95 Identities=24% Similarity=0.174 Sum_probs=59.2
Q ss_pred EEEeCCCCC-ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHH
Q 016750 33 TILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 111 (383)
Q Consensus 33 ~liDtPG~~-~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~ 111 (383)
.+-+-|||. ++.+....-+..+|+++-|+||..+.. ......-..+. +.+ .++++||.|+ ++ ...
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~-------s~~~~l~~~v~--~k~-~i~vlNK~DL--~~--~~~ 78 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLG-------TRNPELERIVK--EKP-KLLVLNKADL--AP--KEV 78 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEecccccc-------ccCccHHHHHc--cCC-cEEEEehhhc--CC--HHH
Confidence 355669986 456667778889999999999998752 22222223332 334 4789999999 53 222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 112 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.++....+.... ....+.+|+..+.+...+
T Consensus 79 ----~~~W~~~~~~~~-----~~~~~~v~~~~~~~~~~i 108 (322)
T COG1161 79 ----TKKWKKYFKKEE-----GIKPIFVSAKSRQGGKKI 108 (322)
T ss_pred ----HHHHHHHHHhcC-----CCccEEEEeecccCccch
Confidence 333333443321 234677888888877664
No 414
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=94.46 E-value=0.083 Score=48.67 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=39.5
Q ss_pred hcceeeccceeeeecCc-----------------EEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCC
Q 016750 14 KGKTVEVGRAHFETETT-----------------RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~-----------------~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
.++|++.....+...+. ++.|+|+||..+ +....+..++.+|++++|||+..
T Consensus 29 pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 29 PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 57788887777666543 599999999532 34456777889999999999864
No 415
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=94.46 E-value=0.5 Score=48.54 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=46.2
Q ss_pred ccceeeeecCcEEEEEeCCCCCCh------HHHHHH----hhh--hcCEEEEEEECCCCccccccccCCchHHHHHHHHH
Q 016750 20 VGRAHFETETTRFTILDAPGHKSY------VPNMIS----GAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT 87 (383)
Q Consensus 20 ~~~~~~~~~~~~i~liDtPG~~~~------~~~~~~----~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~ 87 (383)
........++..+.+|||||..+. ...++. .+. .+|++|+|........ .......++.+..
T Consensus 156 ~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~aLr~Iq~ 229 (763)
T TIGR00993 156 VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPLLRTITD 229 (763)
T ss_pred EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHHHHHHHH
Confidence 334444567899999999998653 122222 333 4799888887643211 0123334444432
Q ss_pred -cC---CCeEEEEEecCCCC
Q 016750 88 -LG---VTKLLLVVNKMDDH 103 (383)
Q Consensus 88 -~~---i~~~ivviNK~D~~ 103 (383)
+| .+++||+.|..|..
T Consensus 230 lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 230 VLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred HhCHHhHcCEEEEEeCCccC
Confidence 33 34689999999984
No 416
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=94.31 E-value=0.29 Score=43.45 Aligned_cols=67 Identities=13% Similarity=0.023 Sum_probs=48.1
Q ss_pred cEEEEEeCCCCCChHHH-HHHhhhh--cCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q 016750 30 TRFTILDAPGHKSYVPN-MISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 103 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~-~~~~~~~--ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~ 103 (383)
+.+.++|||........ +...+.. +|.+++|+....... .+..+.+..++..+.+..-+++|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~-------~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPL-------YETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHH-------HHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 88999999976443332 2333333 489999998876543 4677888889998887667889998863
No 417
>CHL00175 minD septum-site determining protein; Validated
Probab=94.06 E-value=0.11 Score=48.02 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+.+.++|||+.-. ..+..++..+|.+++|++.+.... ......+..+...+.+.+-+++|+++.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si-------~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAI-------RDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHH-------HHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 57899999998643 345566788999999998765332 244556667777776557788999985
No 418
>PRK14845 translation initiation factor IF-2; Provisional
Probab=94.03 E-value=0.19 Score=54.59 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=58.5
Q ss_pred EEEc-cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeEEEEEecCC-ccCceeeEEEecC
Q 016750 188 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSSV 263 (383)
Q Consensus 188 ~~~~-~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~-~~~i~~G~vl~~~ 263 (383)
.+|+ ..+.++.++|..|+|+.|..|.-..+...-+|.||+.+++++++|.+|+-|++.+.+.. ..++..||+|-..
T Consensus 931 ~vF~~~~~~IaG~~V~~G~i~~~~~l~r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~~ 1008 (1049)
T PRK14845 931 CIFRRSNPAIVGVEVLEGTLRVGVTLIKEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYVD 1008 (1049)
T ss_pred eEEeCCCCeEEEEEEeeCEEecCcEEEecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEEe
Confidence 4563 35788999999999999987743222234579999999999999999999999998643 2357788887653
No 419
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=93.96 E-value=0.13 Score=46.82 Aligned_cols=65 Identities=18% Similarity=0.341 Sum_probs=46.7
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+.+.|+|||+.... .+..++..+|.+++++.+..... ..+...+..+...+...+.+++|+++.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEVSAV-------RDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCcHHH-------HHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 578999999986432 34566788999999998865432 245556666666665457789999985
No 420
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.92 E-value=0.11 Score=50.01 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=43.0
Q ss_pred CcEEEEEeCCCCCCh----HHHHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSY----VPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~----~~~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
++.+.||||||.... +..+...+. ..|..+||+||+.+. ....+.+......++.. +++||+|-
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~idg--lI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCCE--EEEEcccC
Confidence 468999999997443 444444332 468899999997642 23355555556677774 46999997
No 421
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=93.91 E-value=0.18 Score=49.83 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=54.5
Q ss_pred hcceeeccceeeeecC---cEEEEEeCCCCC-------------ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCc
Q 016750 14 KGKTVEVGRAHFETET---TRFTILDAPGHK-------------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQ 77 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~---~~i~liDtPG~~-------------~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~ 77 (383)
-|.|+......++.++ .++.++|.||.- +..+....++.+++++||+|-- |...+.. ..
T Consensus 393 ~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD--GSVDAER---Sn 467 (980)
T KOG0447|consen 393 EGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD--GSVDAER---SI 467 (980)
T ss_pred CCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc--CCcchhh---hh
Confidence 4778777777777654 467999999952 2344455677899999999742 3211000 12
Q ss_pred hHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 78 TREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 78 ~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.-.....+...|.. -|+|++|+|+
T Consensus 468 VTDLVsq~DP~GrR-TIfVLTKVDl 491 (980)
T KOG0447|consen 468 VTDLVSQMDPHGRR-TIFVLTKVDL 491 (980)
T ss_pred HHHHHHhcCCCCCe-eEEEEeecch
Confidence 22344556667875 7899999999
No 422
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=93.90 E-value=0.14 Score=49.04 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=39.3
Q ss_pred hcceeeccceeeeecC-----------------cEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCC
Q 016750 14 KGKTVEVGRAHFETET-----------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~-----------------~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
.++|++.....+...+ .++.|+|+||..+ +....+..++.+|++++|||+..
T Consensus 33 pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 33 PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred ccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 5788888766665544 2589999999532 34456777899999999999963
No 423
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.88 E-value=0.13 Score=47.39 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=42.9
Q ss_pred CcEEEEEeCCCCCCh----HHHHHHhh--hhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~----~~~~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+..+.|+||||.... +.++...+ ...|-.+||+||+... .+..+.+......++.. +++||+|.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~~--~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCCE--EEEEeecC
Confidence 578999999997543 44443333 2568899999997642 23444555555567764 46999997
No 424
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=93.79 E-value=0.092 Score=44.21 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=38.4
Q ss_pred CcEEEEEeCCCCCChHH---H-----HHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecC
Q 016750 29 TTRFTILDAPGHKSYVP---N-----MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 100 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~---~-----~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~ 100 (383)
..++.|+||||..+-.. . ........|.++.+||+...... ++ .......++... . + +++||+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~--~~---~~~~~~~Qi~~a--d-~-ivlnk~ 156 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQH--LD---QQTEAQSQIAFA--D-R-ILLNKT 156 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHH--hh---ccHHHHHHHHHC--C-E-EEEecc
Confidence 46779999999764322 1 22344468999999998764310 10 111222333332 2 4 589999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 96
No 425
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=93.54 E-value=0.66 Score=41.37 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=60.5
Q ss_pred eeccceeeeecCc--EEEEEeCCCCCChH---------------------HHHHHhhh-------hcCEEEEEEECCCCc
Q 016750 18 VEVGRAHFETETT--RFTILDAPGHKSYV---------------------PNMISGAS-------QADIGVLVISARKGE 67 (383)
Q Consensus 18 i~~~~~~~~~~~~--~i~liDtPG~~~~~---------------------~~~~~~~~-------~ad~~ilvvda~~g~ 67 (383)
+......++.++. ++++|||||+.|++ ++-+...+ ..+++++.+.++...
T Consensus 90 ik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs 169 (336)
T KOG1547|consen 90 IKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS 169 (336)
T ss_pred EEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc
Confidence 3334444555544 56899999976542 11111111 357999999887543
Q ss_pred cccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 016750 68 FETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 129 (383)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (383)
. .+-+.+.++.+.+. -++|-||-|.|.... +...+.++.++.-+...+++
T Consensus 170 L------rplDieflkrLt~v--vNvvPVIakaDtlTl----eEr~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 170 L------RPLDIEFLKRLTEV--VNVVPVIAKADTLTL----EERSAFKQRIRKELEKHGID 219 (336)
T ss_pred c------CcccHHHHHHHhhh--heeeeeEeecccccH----HHHHHHHHHHHHHHHhcCcc
Confidence 2 25666666555443 247789999997332 34456777788778777654
No 426
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=0.37 Score=42.89 Aligned_cols=107 Identities=20% Similarity=0.273 Sum_probs=64.3
Q ss_pred cEEEEEeCCCCCChHHHH---HHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCC---eEEEEEecCCCC
Q 016750 30 TRFTILDAPGHKSYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNKMDDH 103 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~---~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~---~~ivviNK~D~~ 103 (383)
..+.+||-||+-+|..-. ..-++.+.+.++|+||.+..++ +-++-|+..++...+. .+=|.+-|.|-.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~e------ala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYME------ALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHH------HHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 357899999998764432 3346788999999999887653 4566666666665432 266889999963
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 143 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 143 (383)
..++.-+....+.++..+-+...|.. +-.+.+..+|...
T Consensus 149 sdd~kietqrdI~qr~~d~l~d~gle-~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 149 SDDFKIETQRDIHQRTNDELADAGLE-KVQVSFYLTSIYD 187 (347)
T ss_pred chhhhhhhHHHHHHHhhHHHHhhhhc-cceEEEEEeeecc
Confidence 22222122233444455555555543 1123455555443
No 427
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.50 E-value=0.13 Score=49.47 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=40.5
Q ss_pred ecCcEEEEEeCCCCCC---hHHHHHHhhh---hcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---------CCC
Q 016750 27 TETTRFTILDAPGHKS---YVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------GVT 91 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~---~~~~~~~~~~---~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---------~i~ 91 (383)
+.++.+.||||||... +....+..+. .++-.+||++|+.+. ....+.+...... ++.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--------~~l~evi~~f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--------DTLNEVVQAYRSAAGQPKAALPDLA 284 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--------HHHHHHHHHHHHhhcccccccCCCC
Confidence 4577899999999763 3334444443 345569999999864 2223333333332 233
Q ss_pred eEEEEEecCCC
Q 016750 92 KLLLVVNKMDD 102 (383)
Q Consensus 92 ~~ivviNK~D~ 102 (383)
. +++||+|-
T Consensus 285 ~--~I~TKlDE 293 (374)
T PRK14722 285 G--CILTKLDE 293 (374)
T ss_pred E--EEEecccc
Confidence 3 46899997
No 428
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=93.49 E-value=0.3 Score=42.12 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=48.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC--CCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~--i~~~ivviNK~D~ 102 (383)
.+.+.|+|||+..... +...+..+|.+|++++++.-.. ..+...+..++..+ .+.+-+++||.+.
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i-------~~~~~~~~~l~~~~~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSI-------EGAERLIELLKRLGKKLKIIGVVINRVDP 160 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHH-------HHHHHHHHHHHHHTHTEEEEEEEEEEETS
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHH-------HHHHHHHHHHHHhccccceEEEEEeeeCC
Confidence 3889999999965544 5667889999999999875321 24556667777776 3346789999986
No 429
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=93.33 E-value=0.32 Score=43.69 Aligned_cols=65 Identities=6% Similarity=0.058 Sum_probs=42.3
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH------HcCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~------~~~i~~~ivviNK~D 101 (383)
+++.+.||||||+.. ..+..++..+|.+|+.+.++.-.. ..+.+.+..+. ..+++ ..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~-------~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDI-------DEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHH-------HHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 468999999999765 445678889999998887754322 12223322222 22566 458899987
Q ss_pred C
Q 016750 102 D 102 (383)
Q Consensus 102 ~ 102 (383)
.
T Consensus 152 ~ 152 (231)
T PRK13849 152 V 152 (231)
T ss_pred c
Confidence 3
No 430
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=0.23 Score=47.28 Aligned_cols=66 Identities=24% Similarity=0.367 Sum_probs=42.8
Q ss_pred eeecCcEEEEEeCCCCCC----hHHHHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHH-HH-HHHcCCCeEEEE
Q 016750 25 FETETTRFTILDAPGHKS----YVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHV-ML-AKTLGVTKLLLV 96 (383)
Q Consensus 25 ~~~~~~~i~liDtPG~~~----~~~~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~-~~~~~i~~~ivv 96 (383)
|.-++..+.|+||.|.+. +..+|..-.+ .+|-+|+|+||+-| |.-+.. .. -...++- -++
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----------Qaae~Qa~aFk~~vdvg--~vI 246 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----------QAAEAQARAFKETVDVG--AVI 246 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----------HhHHHHHHHHHHhhccc--eEE
Confidence 445788999999999543 4555554333 68999999999876 333321 11 1223443 356
Q ss_pred EecCCC
Q 016750 97 VNKMDD 102 (383)
Q Consensus 97 iNK~D~ 102 (383)
+||+|-
T Consensus 247 lTKlDG 252 (483)
T KOG0780|consen 247 LTKLDG 252 (483)
T ss_pred EEeccc
Confidence 999996
No 431
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.23 E-value=0.26 Score=48.53 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=39.9
Q ss_pred CcEEEEEeCCCCCChHHHH------HHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEEEEEecCC
Q 016750 29 TTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 101 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~------~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~ivviNK~D 101 (383)
++.+.||||||.......+ +..+..+|.++||+|+..+. ...+.+.... ..++. -+++||+|
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---------~av~~a~~F~~~l~i~--gvIlTKlD 243 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---------QAKNQAKAFHEAVGIG--GIIITKLD 243 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---------HHHHHHHHHHhcCCCC--EEEEeccc
Confidence 4578999999976543332 23345789999999997752 2233332222 23443 35789999
Q ss_pred C
Q 016750 102 D 102 (383)
Q Consensus 102 ~ 102 (383)
.
T Consensus 244 ~ 244 (437)
T PRK00771 244 G 244 (437)
T ss_pred C
Confidence 7
No 432
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.92 E-value=0.31 Score=47.91 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=39.9
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHH--hhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-HHcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~--~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~~~i~~~ivviNK~ 100 (383)
.++.+.|+||||.... +.++.. ..-.+|.++||+|+..+ ....+++... ...++.. +++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~g--iIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLTG--VVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCCE--EEEeCc
Confidence 4567999999996433 222211 22358899999999764 2333343333 3456653 469999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|.
T Consensus 250 D~ 251 (428)
T TIGR00959 250 DG 251 (428)
T ss_pred cC
Confidence 95
No 433
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.53 E-value=0.29 Score=47.67 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=42.6
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHhhh-----hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISGAS-----QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 98 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~~~-----~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN 98 (383)
.+..+.||||||.... +..+...+. ...-.+||+||+.+. ....+.+..-...++.. +++|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~g--lIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYRR--ILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCCE--EEEE
Confidence 4678899999997532 222222222 234689999998864 24455555556677774 4699
Q ss_pred cCCC
Q 016750 99 KMDD 102 (383)
Q Consensus 99 K~D~ 102 (383)
|+|-
T Consensus 368 KLDE 371 (432)
T PRK12724 368 KLDE 371 (432)
T ss_pred cccC
Confidence 9997
No 434
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.29 E-value=0.23 Score=47.69 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=38.5
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
+++.+.||||||.... +.++..... .+|..+||+++.... .+..+.+......++.. +++||+|
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--------~d~~~i~~~f~~l~i~g--lI~TKLD 353 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--------ADVMTILPKLAEIPIDG--FIITKMD 353 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--------HHHHHHHHhcCcCCCCE--EEEEccc
Confidence 3578999999998543 333333222 457778888874421 12223333334456653 4699999
Q ss_pred C
Q 016750 102 D 102 (383)
Q Consensus 102 ~ 102 (383)
.
T Consensus 354 E 354 (407)
T PRK12726 354 E 354 (407)
T ss_pred C
Confidence 7
No 435
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.80 E-value=0.38 Score=46.68 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=42.3
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHhhhh--cC-EEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISGASQ--AD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~~~~--ad-~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~ 100 (383)
.++.+.||||||.... +..+...+.. .+ -.+||+||+.+. ....+.+......++.. +++||+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~~--~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYKT--VIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEec
Confidence 5788999999996432 2333333332 23 689999999864 23444555555567764 469999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|-
T Consensus 323 De 324 (388)
T PRK12723 323 DE 324 (388)
T ss_pred cC
Confidence 97
No 436
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.45 E-value=0.64 Score=45.07 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=42.9
Q ss_pred eecCcEEEEEeCCCCCC----hHHHHH--HhhhhcCEEEEEEECCCCccccccccCCchHH-HH-HHHHHcCCCeEEEEE
Q 016750 26 ETETTRFTILDAPGHKS----YVPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTRE-HV-MLAKTLGVTKLLLVV 97 (383)
Q Consensus 26 ~~~~~~i~liDtPG~~~----~~~~~~--~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~-~~-~~~~~~~i~~~ivvi 97 (383)
....+.+.|+||+|-.. ++.++. ...-.+|-++||+||..| |+-. .. .+-..+++. - |++
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G----------QdA~~~A~aF~e~l~it-G-vIl 246 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG----------QDAVNTAKAFNEALGIT-G-VIL 246 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc----------hHHHHHHHHHhhhcCCc-e-EEE
Confidence 34567899999999543 444442 344579999999999886 3322 22 222345665 3 579
Q ss_pred ecCCC
Q 016750 98 NKMDD 102 (383)
Q Consensus 98 NK~D~ 102 (383)
||+|-
T Consensus 247 TKlDG 251 (451)
T COG0541 247 TKLDG 251 (451)
T ss_pred EcccC
Confidence 99996
No 437
>PRK10867 signal recognition particle protein; Provisional
Probab=91.23 E-value=0.54 Score=46.29 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=38.7
Q ss_pred cCcEEEEEeCCCCCC----hHHHHHHh--hhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~----~~~~~~~~--~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~ivviNK~ 100 (383)
.++.+.|+||||... .+.++... ...+|-+++|+|+..+- ...+.+.... ..++. - +++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---------~av~~a~~F~~~~~i~-g-iIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---------DAVNTAKAFNEALGLT-G-VILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---------HHHHHHHHHHhhCCCC-E-EEEeCc
Confidence 457899999999543 33332221 22578889999997641 2223333222 34554 2 568999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|-
T Consensus 251 D~ 252 (433)
T PRK10867 251 DG 252 (433)
T ss_pred cC
Confidence 96
No 438
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=91.20 E-value=1.4 Score=41.75 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=65.2
Q ss_pred hhcceeeccceeeeecCc--EEEEEeCCCCCChHHH-------------HHH-hh--------------hhcCEEEEEEE
Q 016750 13 IKGKTVEVGRAHFETETT--RFTILDAPGHKSYVPN-------------MIS-GA--------------SQADIGVLVIS 62 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~--~i~liDtPG~~~~~~~-------------~~~-~~--------------~~ad~~ilvvd 62 (383)
++++.+......+..++. ++++|||||..+++.+ ... ++ ...+++|+.+.
T Consensus 63 ~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~ 142 (373)
T COG5019 63 SPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIR 142 (373)
T ss_pred CcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEec
Confidence 345555555555555554 5689999998765211 111 11 13689999998
Q ss_pred CCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 016750 63 ARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 128 (383)
Q Consensus 63 a~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (383)
.+..- + .+.+.+.++.+... + .+|-||-|.|.- ..+.+...++.+.+.+...++
T Consensus 143 Ptgh~----l--~~~DIe~Mk~ls~~-v-NlIPVI~KaD~l----T~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 143 PTGHG----L--KPLDIEAMKRLSKR-V-NLIPVIAKADTL----TDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred CCCCC----C--CHHHHHHHHHHhcc-c-CeeeeeeccccC----CHHHHHHHHHHHHHHHHHhCC
Confidence 76421 1 15566655554432 3 388999999983 356778888888888876654
No 439
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.12 E-value=0.58 Score=46.98 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=39.5
Q ss_pred cCcEEEEEeCCCCCChHHHH------HHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~------~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
.++.+.||||||........ +.... ....+||++++.+. ....+.+......+.. -+++||+|
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~--------~Dl~eii~~f~~~~~~--gvILTKlD 495 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHF--------SDLDEVVRRFAHAKPQ--GVVLTKLD 495 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCCh--------hHHHHHHHHHHhhCCe--EEEEecCc
Confidence 46789999999975432221 12222 34568889987653 2344455555555543 46899999
Q ss_pred C
Q 016750 102 D 102 (383)
Q Consensus 102 ~ 102 (383)
.
T Consensus 496 E 496 (559)
T PRK12727 496 E 496 (559)
T ss_pred C
Confidence 8
No 440
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=91.06 E-value=0.44 Score=45.43 Aligned_cols=49 Identities=29% Similarity=0.330 Sum_probs=33.8
Q ss_pred HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHHc-CCCeEEEEEecCCC
Q 016750 46 NMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL-GVTKLLLVVNKMDD 102 (383)
Q Consensus 46 ~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~-~i~~~ivviNK~D~ 102 (383)
+...-+..+|++|-|+||.++. +.--.|+ ..++.. .-+|+|.|+||+||
T Consensus 206 ELyKViDSSDVvvqVlDARDPm--------GTrc~~ve~ylkke~phKHli~vLNKvDL 256 (572)
T KOG2423|consen 206 ELYKVIDSSDVVVQVLDARDPM--------GTRCKHVEEYLKKEKPHKHLIYVLNKVDL 256 (572)
T ss_pred HHHHhhcccceeEEeeeccCCc--------ccccHHHHHHHhhcCCcceeEEEeecccc
Confidence 3444566789999999999875 2222344 344443 24579999999999
No 441
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.81 E-value=0.88 Score=42.67 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=39.6
Q ss_pred cCcEEEEEeCCCC----CChHHHHHH---hhhh-----cCEEEEEEECCCCccccccccCCchHHHHHHH-HHcCCCeEE
Q 016750 28 ETTRFTILDAPGH----KSYVPNMIS---GASQ-----ADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLL 94 (383)
Q Consensus 28 ~~~~i~liDtPG~----~~~~~~~~~---~~~~-----ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~~~i~~~i 94 (383)
.+..+.|+||+|- ..++.++.. -+.. ++-+++++||..|- ...++.+.- ...++. -
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq---------nal~QAk~F~eav~l~-G- 288 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ---------NALSQAKIFNEAVGLD-G- 288 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh---------hHHHHHHHHHHhcCCc-e-
Confidence 4678999999993 234444333 2222 34488888999873 333444332 344676 4
Q ss_pred EEEecCCC
Q 016750 95 LVVNKMDD 102 (383)
Q Consensus 95 vviNK~D~ 102 (383)
+++||+|-
T Consensus 289 iIlTKlDg 296 (340)
T COG0552 289 IILTKLDG 296 (340)
T ss_pred EEEEeccc
Confidence 47999995
No 442
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=90.81 E-value=0.6 Score=42.82 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=40.8
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~~ivviNK~D~ 102 (383)
+.+.+.||||||.... ..+..++..||.+|+++.++.... ....+.++.++ ..+++..-+++|++|.
T Consensus 114 ~~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l-------~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 114 EEYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSI-------FAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred ccCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccH-------HHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 3578999999985322 123455889999999998764321 12223333222 2355534468999884
No 443
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.58 E-value=0.98 Score=42.71 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=44.2
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
..+.+.+||||+.... .+...+..+|.+++|++.+.... ....+.++.+...+.+ +-+++|....
T Consensus 203 ~~~D~VIID~p~~~~~--~~~~~L~~AD~vliV~~~~~~sl-------~~a~r~l~~l~~~~~~-~~lVv~~~~~ 267 (322)
T TIGR03815 203 RGGDLVVVDLPRRLTP--AAETALESADLVLVVVPADVRAV-------AAAARVCPELGRRNPD-LRLVVRGPAP 267 (322)
T ss_pred hcCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEcCCcHHHH-------HHHHHHHHHHhhhCCC-eEEEEeCCCC
Confidence 3578999999997553 36677899999999998764322 2445556666665543 5566786543
No 444
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=90.35 E-value=0.64 Score=46.56 Aligned_cols=77 Identities=21% Similarity=0.401 Sum_probs=48.1
Q ss_pred CCCChHH--HHHHhhhhcCEEEEEEECCC-----C------------ccccccccCCchHHHHHHHHHcCCCeEEEEEec
Q 016750 39 GHKSYVP--NMISGASQADIGVLVISARK-----G------------EFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 99 (383)
Q Consensus 39 G~~~~~~--~~~~~~~~ad~~ilvvda~~-----g------------~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK 99 (383)
|-++|.. -...++. +|++++|.-... | ..++|+. ...+|++.++.+|+| ++|+|||
T Consensus 307 GaEKF~dIkcr~~gl~-P~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~---NL~RHIenvr~FGvP-vVVAINK 381 (557)
T PRK13505 307 GAEKFLDIKCRKAGLK-PDAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFA---NLERHIENIRKFGVP-VVVAINK 381 (557)
T ss_pred CCceeeeeecccCCCC-CCEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHH---HHHHHHHHHHHcCCC-EEEEEeC
Confidence 4455533 3333443 889888875432 1 1122332 567899999999999 8899999
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 016750 100 MDDHTVNWSKERYDEIESKMTPFLKASGY 128 (383)
Q Consensus 100 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (383)
.|... + +..+.++++++..|+
T Consensus 382 Fd~DT----e----~Ei~~I~~~c~e~Gv 402 (557)
T PRK13505 382 FVTDT----D----AEIAALKELCEELGV 402 (557)
T ss_pred CCCCC----H----HHHHHHHHHHHHcCC
Confidence 99721 2 233446666776664
No 445
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=89.74 E-value=0.72 Score=44.50 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=45.3
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
.++.+.||||.|+..+ +.++...+. ...-..||++|+..- ...++.+......++..+ ++||+|
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--------~dlkei~~~f~~~~i~~~--I~TKlD 349 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--------EDLKEIIKQFSLFPIDGL--IFTKLD 349 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--------HHHHHHHHHhccCCccee--EEEccc
Confidence 5678999999997654 333333333 346677888987642 345566677777888854 589999
Q ss_pred CC
Q 016750 102 DH 103 (383)
Q Consensus 102 ~~ 103 (383)
-.
T Consensus 350 ET 351 (407)
T COG1419 350 ET 351 (407)
T ss_pred cc
Confidence 84
No 446
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.68 E-value=0.77 Score=45.23 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=41.4
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHhhh---hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~~~---~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~ 100 (383)
.++.+.||||||+..+ +..+...+. ..+-+.||++++.+. ....+.+......++.+ +++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~~--vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLDG--LIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCCE--EEEecc
Confidence 4678999999997544 222222222 345778999997753 23444455555666643 579999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|.
T Consensus 368 De 369 (424)
T PRK05703 368 DE 369 (424)
T ss_pred cc
Confidence 97
No 447
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=88.89 E-value=2 Score=38.55 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=39.5
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHHc--CCCeEEEEEecCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL--GVTKLLLVVNKMDD 102 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~--~i~~~ivviNK~D~ 102 (383)
+.+.++|||+. +...+..++..+|.+++++..+.... ......+ .++... ..+ +-+++|+.|.
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~-------~~~~~~~~~l~~~~~~~~~-~~iv~n~~~~ 180 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACY-------ATLHQQALALFAGSGPRIG-PHFLINQFDP 180 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHH-------HHHHHHHHHHhhccccccc-ceEEeeccCc
Confidence 37999999994 33456677889999999998754221 1122122 223212 222 5578999986
No 448
>PRK10037 cell division protein; Provisional
Probab=88.42 E-value=2.5 Score=38.34 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=40.2
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+.+.+.|||||+... ..+..++..||.+|+++.+..- ..++..+....+.+.+++|+.+.
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~~-------------~~i~~~~~~~~~~~~i~~n~~~~ 175 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDAN-------------CHIRLHQQALPAGAHILINDLRI 175 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCHH-------------HHHhhhccccCCCeEEEEecCCc
Confidence 468899999999754 3567788999999999976421 12333333222235567898763
No 449
>PRK11670 antiporter inner membrane protein; Provisional
Probab=87.84 E-value=1.4 Score=42.67 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=45.1
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
++.+.|.+||||..-.-...+...+..+|.+++|+....-.. ....+.+..+...+++.+-++.|+.|.
T Consensus 213 ~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~-------~da~~~i~~~~~~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 213 WPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIAL-------IDAKKGIVMFEKVEVPVLGIVENMSMH 281 (369)
T ss_pred hccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHH-------HHHHHHHHHHhccCCCeEEEEEcCCcc
Confidence 457889999998754333334445556899999986644211 134455566666788755578999875
No 450
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=87.80 E-value=1.1 Score=41.71 Aligned_cols=57 Identities=25% Similarity=0.351 Sum_probs=44.0
Q ss_pred HHcCCCeEEEEEecCCCCC-----CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccc
Q 016750 86 KTLGVTKLLLVVNKMDDHT-----VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 86 ~~~~i~~~ivviNK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~ 149 (383)
..+|+| ++||++|+|... -++..+.|+.+...++.++-++|- ..|.+|++...|++-
T Consensus 219 ~NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga------aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 219 HNLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA------ALIYTSVKETKNIDL 280 (473)
T ss_pred hcCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc------eeEEeecccccchHH
Confidence 457898 899999999821 234456778888888888887763 588999999999875
No 451
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=87.47 E-value=2 Score=39.42 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=43.7
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEec
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 99 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK 99 (383)
..+.+.|+|||..... ......+..+|.+|+|+.+..... ....+.++.++..+.+-+=+|+|+
T Consensus 211 ~~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~~t~~-------~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 211 GDYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVNETRL-------HELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred hcCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECCCCCH-------HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 4578999999986432 334445678999999999866432 345566677777787744456664
No 452
>PRK10818 cell division inhibitor MinD; Provisional
Probab=87.36 E-value=1.7 Score=39.76 Aligned_cols=64 Identities=9% Similarity=0.152 Sum_probs=42.1
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---------CCCeEEEEEec
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------GVTKLLLVVNK 99 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---------~i~~~ivviNK 99 (383)
.+.+.++|||+.... ....++..+|.++++++++.... ......+..+... .++ ..+++|+
T Consensus 113 ~yd~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~~~sl-------~~~~~~l~~i~~~~~~~~~~~~~~~-~~vv~n~ 182 (270)
T PRK10818 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSV-------RDSDRILGILASKSRRAENGEEPIK-EHLLLTR 182 (270)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHhCCeEEEEcCCCchHH-------HhHHHHHHHHHHhhccccccccccc-eEEEEec
Confidence 588999999987643 34556889999999999875432 1333344443311 223 4578899
Q ss_pred CCC
Q 016750 100 MDD 102 (383)
Q Consensus 100 ~D~ 102 (383)
+|.
T Consensus 183 ~~~ 185 (270)
T PRK10818 183 YNP 185 (270)
T ss_pred cCH
Confidence 885
No 453
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=87.30 E-value=1.9 Score=39.58 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=39.5
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~~ivviNK~D~ 102 (383)
+++.+.||||||..... .+..++..||.+|+++.+..... ......+..++ ..+++..-+++|+.+.
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl-------~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~ 186 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSI-------FAANRIAAAIQAKAKNYKVRLAGVIANRSAG 186 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhH-------HHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence 46889999999853221 23455788999999997754211 11222222222 3345533478899764
No 454
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=87.24 E-value=1.9 Score=32.94 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=27.4
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 66 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g 66 (383)
+.+.++|+|+...- .....+..+|.++++++++..
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHH
Confidence 67899999996543 334778889999999998654
No 455
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.20 E-value=1.5 Score=46.06 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=37.9
Q ss_pred cCcEEEEEeCCCCCChHHHHHH------hhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEEe
Q 016750 28 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVN 98 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~------~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivviN 98 (383)
.++.+.||||||......++.. .....+-.+||+|++.+. ....+.+...+.. ++.. +++|
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--------~~l~~i~~~f~~~~~~~i~g--lIlT 331 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--------DTLNEVVHAYRHGAGEDVDG--CIIT 331 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--------HHHHHHHHHHhhcccCCCCE--EEEe
Confidence 4668999999994332222211 123467889999998642 1222333333322 4553 4699
Q ss_pred cCCC
Q 016750 99 KMDD 102 (383)
Q Consensus 99 K~D~ 102 (383)
|+|-
T Consensus 332 KLDE 335 (767)
T PRK14723 332 KLDE 335 (767)
T ss_pred ccCC
Confidence 9997
No 456
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.15 E-value=2.5 Score=40.34 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=64.7
Q ss_pred HHhhcceeeccceeeeecCc--EEEEEeCCCCCCh-------------HHHH-HH-----------hhh--hcCEEEEEE
Q 016750 11 ERIKGKTVEVGRAHFETETT--RFTILDAPGHKSY-------------VPNM-IS-----------GAS--QADIGVLVI 61 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~--~i~liDtPG~~~~-------------~~~~-~~-----------~~~--~ad~~ilvv 61 (383)
+..+.++++.....++-++. +++++||||..|+ +... .. .+. ..+++|+.+
T Consensus 58 ~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI 137 (366)
T KOG2655|consen 58 RIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFI 137 (366)
T ss_pred CccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEe
Confidence 44445566666666665554 4689999997654 1111 11 112 468999999
Q ss_pred ECCCC-ccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcC
Q 016750 62 SARKG-EFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 127 (383)
Q Consensus 62 da~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (383)
..+.. . .+.+.+.++.+.. .+. +|-||-|.|.- ........+..+.+.+...+
T Consensus 138 ~P~ghgL-------~p~Di~~Mk~l~~-~vN-iIPVI~KaD~l----T~~El~~~K~~I~~~i~~~n 191 (366)
T KOG2655|consen 138 SPTGHGL-------KPLDIEFMKKLSK-KVN-LIPVIAKADTL----TKDELNQFKKRIRQDIEEHN 191 (366)
T ss_pred CCCCCCC-------cHhhHHHHHHHhc-ccc-ccceeeccccC----CHHHHHHHHHHHHHHHHHcC
Confidence 87642 3 2556665554433 454 88899999983 34666777777777776654
No 457
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=87.04 E-value=3.7 Score=41.10 Aligned_cols=179 Identities=16% Similarity=0.184 Sum_probs=105.8
Q ss_pred EeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHH
Q 016750 35 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDE 114 (383)
Q Consensus 35 iDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~ 114 (383)
-|.-|.-+-+...++.+..-.+=+=+|+..-|. -+..-+++++...- +|+..| ++-+..
T Consensus 478 ~DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~---------vtesDlelA~~~da--iI~~Fn------V~~~~~---- 536 (683)
T KOG1145|consen 478 CDVQGSAEAVLDALSTLNSEQVKLNVVHSGVGP---------VTESDLELAQASDA--IIYGFN------VKASPS---- 536 (683)
T ss_pred ecccchHHHHHHHHhhcCCCceEEEEEEeccCC---------CCcchhHHHHhcCc--EEEEEe------cCCChH----
Confidence 488887777888888888778888888876664 45556667777653 677777 221111
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccHHHHhhc-cCCCCC-CCCCCeeEEEEEEE--
Q 016750 115 IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPR-DPNGPFRMPIIDKF-- 190 (383)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~-~~~~~~-~~~~p~~~~I~~~~-- 190 (383)
+......-|. .+..- .=|..+++ .+.+.|.. +|+-.. ..-+ ...|..+|
T Consensus 537 ----~~~~a~~~gV------kI~~~-----nVIY~Lie----------Dv~~~ls~rlp~v~e~~vvG--ea~Vl~~F~i 589 (683)
T KOG1145|consen 537 ----VKQLAAAKGV------KIRLY-----NVIYRLIE----------DVRELLSERLPPVEEQEVVG--EAEVLATFDI 589 (683)
T ss_pred ----HHHHHhccCc------eEeeh-----hHHHHHHH----------HHHHHHHhhCCCceEEeecc--ceeeeeeEee
Confidence 1111122221 12110 00112211 13333332 332111 0011 22344444
Q ss_pred -ccCCe--EEEEEEEEeEEecCCEEEEecCCcEEEEE---EEEECCccceecCCCCeEEEEEecCCccCceeeEEEec
Q 016750 191 -KDMGT--VVMGKVESGSVREGDSLLVMPNKAQVKVL---AIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 262 (383)
Q Consensus 191 -~~~G~--vv~G~V~sG~l~~gd~v~i~p~~~~~~V~---sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~ 262 (383)
.++++ |+.++|..|.+++...+.+..++..+-.- |+.-..++|+++..|.-|||.+..-+ .+.+.||.+-.
T Consensus 590 ~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~SlKh~KedV~~vkkg~ECGl~~~d~~-~~f~~GD~i~~ 666 (683)
T KOG1145|consen 590 REKRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDSLKHLKEDVTEVKKGHECGLTFDDGN-EDFKEGDKIQC 666 (683)
T ss_pred ccccccccccceEeecceEeecceEEEEeCCcEEEEechhHHhhhhhhhhhhcCCCeeeeEeccCC-cCCCcCCEEEE
Confidence 22344 78899999999999999999988766444 44555789999999999999998432 26888888743
No 458
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.80 E-value=1.2 Score=43.71 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=42.1
Q ss_pred ecCcEEEEEeCCCCCChHHHH---HHhh---hhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecC
Q 016750 27 TETTRFTILDAPGHKSYVPNM---ISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 100 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~---~~~~---~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~ 100 (383)
..++.+.+|||+|........ +..+ ...+-.+||+||+.+. ....+.+......++.. +++||+
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--------~~~~~~~~~f~~~~~~~--~I~TKl 336 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--------DTLDEVISAYQGHGIHG--CIITKV 336 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEee
Confidence 457789999999976543222 2222 2345788999998753 22334444445567764 469999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|-
T Consensus 337 DE 338 (420)
T PRK14721 337 DE 338 (420)
T ss_pred eC
Confidence 97
No 459
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=86.55 E-value=4.6 Score=36.78 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=44.6
Q ss_pred cCcEEEEEeCCCCCChH---H--HH----HHhhh--hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEE
Q 016750 28 ETTRFTILDAPGHKSYV---P--NM----ISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 96 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~---~--~~----~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivv 96 (383)
..+.+.++|||...... . .+ ...+. ..+.+++|+....-.. ..+.+.+..+...|++..-+|
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~-------~e~~r~~~~L~~~g~~v~gvV 195 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSL-------YETERAIQELAKYGIDVDAVI 195 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHH-------HHHHHHHHHHHHCCCCCCEEE
Confidence 46789999999742211 1 11 11222 2357888887765332 467778888889998866789
Q ss_pred EecCCC
Q 016750 97 VNKMDD 102 (383)
Q Consensus 97 iNK~D~ 102 (383)
+|++..
T Consensus 196 ~N~v~~ 201 (254)
T cd00550 196 VNQLLP 201 (254)
T ss_pred EecCcc
Confidence 999875
No 460
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=86.18 E-value=2 Score=37.85 Aligned_cols=68 Identities=15% Similarity=0.023 Sum_probs=40.0
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhh--hhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc----CCCeEEEEEecC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKM 100 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~----~i~~~ivviNK~ 100 (383)
.+.+.+.+|||||....... ...+ +.||.++++++.+.-.. ......++.++.+ +.+..-+++||+
T Consensus 114 ~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl-------~~~~~l~~~i~~~~~~~~~~~~gvv~N~~ 185 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMAL-------YAANNICKGIRKYAKSGGVRLGGLICNSR 185 (212)
T ss_pred ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHH-------HHHHHHHHHHHHhCcccCCcEEEEEEeCC
Confidence 35688999999886421111 1122 47999999998754211 1123333444443 444345889999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
+.
T Consensus 186 ~~ 187 (212)
T cd02117 186 NT 187 (212)
T ss_pred CC
Confidence 96
No 461
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=85.90 E-value=1.5 Score=40.81 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=40.1
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc----CCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~----~i~~~ivviNK~D~ 102 (383)
+++.+.+|||||.-. ...+..++..||.+|+++++..-.. ......++.++.. +++..-+++|+.|.
T Consensus 114 ~~yD~IiIDt~~~l~-~~a~~aal~~AD~viIp~~p~~~sl-------~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 114 YEYDIILFDVLGDVV-CGGFAAPLNYADYCIIITDNGFDAL-------FAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred ccCCEEEEecCCcce-echhhhhhhcCCEEEEEecCCHHHH-------HHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 367899999998621 1223456788999999998754321 1222233333322 34434478899874
No 462
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=85.87 E-value=1.5 Score=40.25 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=39.7
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~ 102 (383)
+++.+.+|||||.-... .+..++..||.+|+++....... ....+.++.+.. .+++..-+++|++|.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl-------~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDAL-------FAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHH-------HHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 46899999999853211 11245788999999886643211 122333333332 345544578899885
No 463
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=85.31 E-value=2.7 Score=36.84 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=40.4
Q ss_pred CcEEEEEeCCCCCC------hHHHHHHhhhh---cCEEEEEEECCCCccccccccCCchH------HHHHHHHHcCCCeE
Q 016750 29 TTRFTILDAPGHKS------YVPNMISGASQ---ADIGVLVISARKGEFETGFEKGGQTR------EHVMLAKTLGVTKL 93 (383)
Q Consensus 29 ~~~i~liDtPG~~~------~~~~~~~~~~~---ad~~ilvvda~~g~~~~~~~~~~~~~------~~~~~~~~~~i~~~ 93 (383)
+..+.++|+||+-+ -+++.+..+.+ -=++++++|+.--+ ..++ ..+...-.+.+|+
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~v--------D~~KfiSG~lsAlsAMi~lE~P~- 167 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLV--------DSTKFISGCLSALSAMISLEVPH- 167 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhh--------hHHHHHHHHHHHHHHHHHhcCcc-
Confidence 34678999999644 36666666654 23567777765322 1222 2233344568894
Q ss_pred EEEEecCCC
Q 016750 94 LLVVNKMDD 102 (383)
Q Consensus 94 ivviNK~D~ 102 (383)
|=+++|||+
T Consensus 168 INvlsKMDL 176 (273)
T KOG1534|consen 168 INVLSKMDL 176 (273)
T ss_pred hhhhhHHHH
Confidence 578999999
No 464
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.59 E-value=2.3 Score=45.24 Aligned_cols=67 Identities=16% Similarity=0.057 Sum_probs=46.9
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+.+.+++||||+..... .+..-...+|.+|+|+....... ....+.++.++..+.+.+-+|+|++|.
T Consensus 654 ~~yD~IiID~pp~~~~~-d~~~l~~~~D~vl~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVR-DMRAAARLAIIMLLVTAYDRVVV-------ECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred hhCCEEEEcCCCcchhH-HHHHhhhhCCeEEEEEEeCceeH-------HHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 45789999999975432 22233457999999988654322 356667777777777645689999996
No 465
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=84.58 E-value=9.2 Score=36.60 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=28.2
Q ss_pred EEEEEeCCCC-------CChHHHHHHhhhhcCEEEEEEECCC
Q 016750 31 RFTILDAPGH-------KSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 31 ~i~liDtPG~-------~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
.+.|+|.+|. +-+-+.-+.-++.+|+++.|||+..
T Consensus 68 ~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 68 PVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 5789999995 2355566677999999999999984
No 466
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=84.21 E-value=5.3 Score=36.58 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=44.8
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEE--EEEecCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL--LVVNKMDD 102 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~i--vviNK~D~ 102 (383)
+.+.|+|||+- +...+..++..+|.+|+|........ ......++++...+.+... +++|+++-
T Consensus 113 ~D~iliD~~aG--l~~~~~~~~~~sd~~viVt~pe~~si-------~~A~~~i~~~~~~~~~~~~~~vV~N~v~~ 178 (262)
T COG0455 113 YDYILIDTGAG--LSRDTLSFILSSDELVIVTTPEPTSI-------TDAYKTIKILSKLGLDLLGRRVVLNRVRS 178 (262)
T ss_pred CCEEEEeCCCC--ccHHHHHHHHhcCcEEEEeCCCcchH-------HHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 47999999984 33445666777799999987654321 2344566788888876433 89999983
No 467
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=83.94 E-value=3.6 Score=40.05 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=29.1
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
+++.+.|||||+.-.+ .+..++..||.+|+.+.+..
T Consensus 233 ~~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~~ 268 (387)
T PHA02519 233 DNYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAEL 268 (387)
T ss_pred ccCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCcH
Confidence 4688999999998766 46778888999999887653
No 468
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=83.51 E-value=3.6 Score=40.06 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=28.0
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
+++.+.|||||+.-. ..+..++..||.+|+.+.+..
T Consensus 233 ~~YD~IiIDtpP~l~--~~t~nal~AaD~viiP~~~~~ 268 (388)
T PRK13705 233 HDYDVIVIDSAPNLG--IGTINVVCAADVLIVPTPAEL 268 (388)
T ss_pred ccCCEEEEECCCchh--HHHHHHHHHcCEEEEecCCcH
Confidence 467899999998644 346677889999999987653
No 469
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=83.49 E-value=1.9 Score=42.98 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=42.8
Q ss_pred cCCCeEEEEEecCCCCC-----CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccc
Q 016750 88 LGVTKLLLVVNKMDDHT-----VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 88 ~~i~~~ivviNK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~ 149 (383)
+|+| ++||++|.|... .+|.++.++.+.+.++.++-++|. ..|.+|.+...|++.
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA------sL~yts~~~~~n~~~ 254 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA------SLIYTSVKEEKNLDL 254 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC------eEEEeeccccccHHH
Confidence 4688 999999999721 246677788888888888877763 588899988888765
No 470
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=83.32 E-value=14 Score=32.94 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=28.0
Q ss_pred cCcEEEEEeCCCCCCh------HHHHHHhhhh--cCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSY------VPNMISGASQ--ADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~------~~~~~~~~~~--ad~~ilvvda~~ 65 (383)
.+..+.++||||..+. ....+.++.. +|+.|+.++...
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 4688999999996432 3334556665 999999998764
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=81.94 E-value=3.1 Score=41.55 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=39.8
Q ss_pred eecCcEEEEEeCCCCCChHHHH---HHhhh---hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEec
Q 016750 26 ETETTRFTILDAPGHKSYVPNM---ISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 99 (383)
Q Consensus 26 ~~~~~~i~liDtPG~~~~~~~~---~~~~~---~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK 99 (383)
...++.+.+|||+|.......+ ...+. ...-.+||+|+..+. ....+.+......++.. +++||
T Consensus 331 ~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--------~~l~~i~~~f~~~~~~g--~IlTK 400 (484)
T PRK06995 331 ELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--------DTLNEVVQAYRGPGLAG--CILTK 400 (484)
T ss_pred hccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--------HHHHHHHHHhccCCCCE--EEEeC
Confidence 3456779999999954433222 11121 133478999998753 23334445555566653 46899
Q ss_pred CCC
Q 016750 100 MDD 102 (383)
Q Consensus 100 ~D~ 102 (383)
+|-
T Consensus 401 lDe 403 (484)
T PRK06995 401 LDE 403 (484)
T ss_pred CCC
Confidence 997
No 472
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=81.25 E-value=4.5 Score=39.65 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=29.6
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
+.+.+.|||||+...+ .+..++..||.+|+.+.+..
T Consensus 250 ~~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~~ 285 (405)
T PRK13869 250 DDYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQM 285 (405)
T ss_pred ccCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCcH
Confidence 4688999999997654 47778899999999997754
No 473
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=81.04 E-value=2.9 Score=37.08 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=38.0
Q ss_pred cCcEEEEEeCCCCC--ChHHH--HHHhh-hhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHK--SYVPN--MISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~--~~~~~--~~~~~-~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+++.+.+||+||.- .+... ...-+ ..-.-+++|++...+.. .++...++.++..+++..-+++|+++.
T Consensus 102 ~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i-------~~~~~~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 102 QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCI-------NHTLLTLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHH-------HHHHHHHHHHHHCCCCeEEEEEccCCC
Confidence 46789999999842 11111 01111 11223667777654422 244455556667777644578899885
No 474
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=80.62 E-value=3.6 Score=40.00 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=29.0
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
+.+.+.|||||+.... .+..++..||.+|+++.+..
T Consensus 233 ~~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~~ 268 (387)
T TIGR03453 233 DDYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQM 268 (387)
T ss_pred hcCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCch
Confidence 4678999999997544 46778889999999987754
No 475
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=79.98 E-value=6.1 Score=37.74 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=53.3
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC--CCeEEEEEecCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDDH 103 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~--i~~~ivviNK~D~~ 103 (383)
..+.+.++|.| ......+.+.+..+|.+++|++-+-+-. .+.++.+..+++++ -++.++++||.+.+
T Consensus 216 ~~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl~sl-------R~ak~lld~l~~~r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 216 GSFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSLASL-------RNAKELLDELKRLRPNDPKPILVLNRVGVP 284 (366)
T ss_pred ccCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccHHHH-------HHHHHHHHHHHHhCCCCCCceEEeeecCCC
Confidence 35678999999 5667778888999999999999876543 47888999888875 23477899999974
No 476
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=78.17 E-value=7 Score=41.45 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=45.5
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+.+.+.|||||..-..... ......+|.+|+|+....... ....+.+..+...+.+.+=+|+|++|.
T Consensus 639 ~~yD~IIIDtPP~~~~~Da-~~la~~ad~~llVvr~~~t~~-------~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 639 DHYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLNTA-------KEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred hcCCEEEEeCCCccccchH-HHHHHhCCeEEEEEeCCCCCH-------HHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 3578999999986554322 223468899999987654321 345556666777777745578999986
No 477
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=76.13 E-value=6.7 Score=36.56 Aligned_cols=64 Identities=20% Similarity=0.129 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCC-hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 016750 31 RFTILDAPGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 31 ~i~liDtPG~~~-~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~ 106 (383)
+...-+-|||-. -++.+..-+...|++|=|=||.-+.+ +. -+.++.... -.++ |+|.||||| ++
T Consensus 23 ~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLs-------sr-n~~~~~~~~-~k~r-iiVlNK~DL--ad 87 (335)
T KOG2485|consen 23 NMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLS-------SR-NELFQDFLP-PKPR-IIVLNKMDL--AD 87 (335)
T ss_pred CCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCc-------cc-cHHHHHhcC-CCce-EEEEecccc--cC
Confidence 344566788742 34455556678999999999998763 22 223322222 3454 579999999 64
No 478
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=75.73 E-value=10 Score=33.15 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=29.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH
Q 016750 31 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK 86 (383)
Q Consensus 31 ~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~ 86 (383)
.+.++|||..... ..+...+..+|.+|+|+.+..... ....+.+..++
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~-------~~~~~~~~~l~ 197 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQ-------EAVKEALSALE 197 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCH-------HHHHHHHHHhc
Confidence 5889999875542 223333456899999988865432 24445555555
No 479
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=75.46 E-value=8.3 Score=32.28 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=25.9
Q ss_pred cCcEEEEEeCCCCCC--h---HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCC
Q 016750 28 ETTRFTILDAPGHKS--Y---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 91 (383)
Q Consensus 28 ~~~~i~liDtPG~~~--~---~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (383)
.++.+.++|+||+-. + ...+.-+....+-+|+|++...+.. .......+.++..+++
T Consensus 98 ~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~-------~~~~~~~~~l~~~~~~ 159 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTI-------NHTLLTVEHARQTGLT 159 (166)
T ss_pred hcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHH-------HHHHHHHHHHHHCCCC
Confidence 345677777776411 0 0111111122444566666544331 2333444455555665
No 480
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=75.42 E-value=21 Score=34.08 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=61.2
Q ss_pred ecCCCCeEEEEEecCC-------ccCceeeEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeE--EEE
Q 016750 235 HAGPGENLRIRLSGIE-------EEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVV--EEC 305 (383)
Q Consensus 235 ~a~aG~~v~l~l~g~~-------~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~--~~~ 305 (383)
.-.-||+-++.|.+.. ..++.++.+++.+...........-++.| +...+...+..+.+.+...+ .+|
T Consensus 233 ~yTiGQR~Gl~I~~~~~~p~yVv~kd~~~n~~~V~~~~~l~~~~l~~~~~~~---~~~~~~~~~~~~~~k~R~~~~~~~~ 309 (356)
T COG0482 233 YYTIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVGQGEALLSVGLIAEDLNW---LDDAPPEEPLECTAKVRYRQGDEPC 309 (356)
T ss_pred EEecccccccCcCCCCCCCEEEEEEecccCeEEEecchhheeeeeeeecccc---cccccCCCCceEEEEEeccCCCCce
Confidence 3445667776666542 34567777777766433333333344444 22223445556666666666 556
Q ss_pred EEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEc
Q 016750 306 EIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 376 (383)
Q Consensus 306 ~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~ 376 (383)
++..+ +.+.....+.+..|..--+ .....+|-++++.+|+|.|...
T Consensus 310 ~~~~~--------------------~~~~~~~~v~f~~~~~avt-----pGQ~~v~Y~~d~~lGgg~I~~~ 355 (356)
T COG0482 310 KVKVL--------------------SDEDVELAVKFDEPQRAVT-----PGQAAVLYDGDICLGGGIIDTS 355 (356)
T ss_pred eEEEc--------------------cCCcceEEEEecCcccccc-----CCcEEEEecCCEEEeeEEeecc
Confidence 54432 1223344455666643221 1134455556899999998753
No 481
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=74.31 E-value=9.3 Score=34.80 Aligned_cols=68 Identities=16% Similarity=-0.046 Sum_probs=37.5
Q ss_pred cCcEEEEEeCCCCCChHHHHH-HhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMI-SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~-~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+++.+.||||||+........ .....+|.+|+++.++.-.. ......++.++..+.+...++.|..+.
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si-------~~~~~~~~~i~~~~~~~~~vv~~~~~~ 180 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSL-------YAANNIARGIKKLKGKLGGIICNCRGI 180 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHH-------HHHHHHHHHHHHcCCcceEEEEcCCCC
Confidence 467899999998642211100 01258899999987754221 123344455555554423355665553
No 482
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=73.69 E-value=5.1 Score=36.64 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=42.8
Q ss_pred eeecCcEEEEEeCCC-CCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe
Q 016750 25 FETETTRFTILDAPG-HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 98 (383)
Q Consensus 25 ~~~~~~~i~liDtPG-~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN 98 (383)
..|..-.|.+||||- ..|=.-.+.+.++.+|.|++|--...-.. ...+.-+.++++.++| ++=++-
T Consensus 152 vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl-------~Dv~K~i~fc~K~~I~-ilGvVE 218 (300)
T KOG3022|consen 152 VDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVAL-------QDVRKEIDFCRKAGIP-ILGVVE 218 (300)
T ss_pred CCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhh-------HHHHhhhhhhhhcCCc-eEEEEe
Confidence 467778899999985 34433345556666688888764433211 2445667889999998 554443
No 483
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=73.69 E-value=8.2 Score=35.15 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=25.0
Q ss_pred cCcEEEEEeCCCCCChHHH-HHHhhhhcCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSYVPN-MISGASQADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~-~~~~~~~ad~~ilvvda~~ 65 (383)
+++.|.||||||....... ...++..||.+|+++.++.
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 4678999999986422111 1112336999999998865
No 484
>PRK11519 tyrosine kinase; Provisional
Probab=73.47 E-value=11 Score=39.83 Aligned_cols=67 Identities=7% Similarity=0.098 Sum_probs=46.9
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
..+.++|||||..-.. .........+|.+|+|+-...... .+..+.+..++..+.+.+=+|+|+++.
T Consensus 634 ~~yD~ViiDtpP~~~v-~Da~~l~~~~d~~l~Vvr~~~t~~-------~~~~~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 634 KNYDLVLIDTPPILAV-TDAAIVGRHVGTTLMVARYAVNTL-------KEVETSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred hcCCEEEEeCCCcccc-hHHHHHHHHCCeEEEEEeCCCCCH-------HHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 3578999999986543 333445678999999998754321 344455666777788755588999975
No 485
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=73.32 E-value=16 Score=26.90 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=32.9
Q ss_pred EEEEeCC-CCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEE
Q 016750 32 FTILDAP-GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 97 (383)
Q Consensus 32 i~liDtP-G~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivvi 97 (383)
+.++|+| |-.|-.-.+.+.+. .+.+|+|--...-.. ...++-+.+++++++| ++-++
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~-~~g~ivVTTPq~la~-------~dv~r~~~~~~~~~vp-ilGvV 60 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLP-IDGAIVVTTPQELAL-------ADVRRAIDMFRKLNVP-ILGVV 60 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH---SEEEEEE-CCC--H-------HHHHHHHHHHHCTT-E-EEEEE
T ss_pred EEEEeCCCCCCcHHHHHHHhCC-CCeEEEEeCCHHHHH-------HHHHHHHHHHHhcCCC-cEEEE
Confidence 6789997 45566555566665 677777765543221 3566778889999998 55444
No 486
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=71.57 E-value=2.4 Score=33.10 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=20.5
Q ss_pred EEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 96 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 96 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+.||+|++.+ .+..+.+++ .+. +..++|+||....-+....
T Consensus 1 AaNK~D~~~a---~~ni~kl~~----~~~--------~~~vVp~SA~aEl~Lr~a~ 41 (109)
T PF08438_consen 1 AANKADLPAA---DENIEKLKE----KYP--------DEPVVPTSAAAELALRKAA 41 (109)
T ss_dssp EEE-GGG-S----HHHHHHHHH----HHT--------T-EEEEE-HHHHHHHHS-S
T ss_pred CCcccccccc---HhHHHHHHH----hCC--------CCceeeccHHHHHHHHHHH
Confidence 5899998432 233333333 221 3589999997765555443
No 487
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.71 E-value=61 Score=30.93 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=43.7
Q ss_pred HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC----------------CCeEEEEEecCCCCCCCc
Q 016750 44 VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG----------------VTKLLLVVNKMDDHTVNW 107 (383)
Q Consensus 44 ~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~----------------i~~~ivviNK~D~~~~~~ 107 (383)
+..|..-+..++++|+|+|.-.. .+....++.+..+. .|+++++-||.-. +|+
T Consensus 289 L~~~AfLl~VcHivivV~d~~~d---------~~lir~L~~Ae~~rP~laifrh~~~~~r~~~p~lVFv~~KA~r--iDf 357 (491)
T KOG4181|consen 289 LGTMAFLLSVCHIVIVVIDGLAD---------EQLIRLLNAAERLRPTLAIFRHCKGYVRDHMPQLVFVRAKAHR--IDF 357 (491)
T ss_pred HHHHHHHHHHhhEEEEEecchhH---------HHHHHHHHHHHhhCcccCccccccccccccCcceEEEeccccc--ccc
Confidence 33455556789999999996543 24444555444321 4678889999776 555
Q ss_pred cHHHHHHHHHHHHHHHHhcC
Q 016750 108 SKERYDEIESKMTPFLKASG 127 (383)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~ 127 (383)
...+.+.+-..+..+++..+
T Consensus 358 ~pr~rerl~~~~~~l~~~S~ 377 (491)
T KOG4181|consen 358 EPRQRERLDKKLAYLYGPSG 377 (491)
T ss_pred ChHHHHHHHHHHHHHhcccC
Confidence 55444444444555554433
No 488
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=64.83 E-value=32 Score=27.25 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccH--HHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSK--ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+.+..+-..|..-++|+--|++. ..+.. ...+.-.+.+.++++.+|+.+ +-+.++.+||-.++.+.+..+
T Consensus 44 ~fvl~Al~~GaDGV~v~GC~~ge--CHy~~GN~ka~rR~~~lke~l~elgie~-eRv~~~wiSa~E~ekf~e~~~ 115 (132)
T COG1908 44 EFVLKALRKGADGVLVAGCKIGE--CHYISGNYKAKRRMELLKELLKELGIEP-ERVRVLWISAAEGEKFAETIN 115 (132)
T ss_pred HHHHHHHHcCCCeEEEecccccc--eeeeccchHHHHHHHHHHHHHHHhCCCc-ceEEEEEEehhhHHHHHHHHH
Confidence 44444556688878888888887 33222 222344566778888999874 357899999999998887543
No 489
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=64.40 E-value=19 Score=32.60 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=39.5
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCC---CeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV---TKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i---~~~ivviNK~D~ 102 (383)
+++.+.+||||+... ..+..++..+|.+++-+-+..-.. ....+....+........ +...+++|+.|.
T Consensus 118 ~~yD~iiID~pp~l~--~l~~nal~asd~vlIP~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~ 189 (259)
T COG1192 118 DDYDYIIIDTPPSLG--VLTLNALAAADHVLIPVQPEFLDL----EGLEQLLNTLEDLLKLRRNKLIVVGILITRFDS 189 (259)
T ss_pred cCCCEEEECCCCchh--HHHHHHHHHcCeeEEecCchHHHH----HHHHHHHHHHHHHHHhcCCCcceEEEeeceEcC
Confidence 478899999999763 345677788896666554432111 100122334444433221 224577898886
No 490
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=63.34 E-value=20 Score=30.46 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=35.1
Q ss_pred CcEEEEEeCCCCCChHHHH-----HHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~-----~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
...+.||-+.|..+...-+ ....-..+.++.|||+..-.. ....... .......-.+ +++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~------~~~~~~~--~~~Qi~~ADv-IvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDE------LENIPEL--LREQIAFADV-IVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGG------HTTHCHH--HHHHHCT-SE-EEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccc------cccchhh--hhhcchhcCE-EEEecccc
Confidence 3567889999966544332 222335699999999965210 0112111 1222232234 68999999
No 491
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=63.16 E-value=17 Score=31.23 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=40.1
Q ss_pred EEecCCEEEEecCCcEEEEEEEEEC-CccceecCCCCeEEEEEecCCccCceeeEEEec
Q 016750 205 SVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 262 (383)
Q Consensus 205 ~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~ 262 (383)
+|++||.+.+ .+..+.|+||+.. .+.++.|.+.|+-++=.+.+. .....|.-+-.
T Consensus 74 ~l~vGDei~v--d~e~veITSIE~~~gkRV~~A~veeIeTVWgrsl~-~p~~vgvSi~~ 129 (201)
T COG1326 74 TLKVGDEIEV--DGEEVEITSIELGGGKRVKSAKVEEIETVWGRSLV-IPVEVGVSIHL 129 (201)
T ss_pred eEecCCEEEE--cCCEEEEEEEeeCCCccccccccceeeeEeeeccc-CccEEEEEEec
Confidence 4899999998 5666999999999 789999999999985333211 22455555543
No 492
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=63.14 E-value=14 Score=33.84 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=24.6
Q ss_pred cCcEEEEEeCCCCCChHH-HHHHhhhhcCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSYVP-NMISGASQADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~-~~~~~~~~ad~~ilvvda~~ 65 (383)
+++.|.+|||||..-... ....++..||.+++++....
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~ 153 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGEL 153 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchH
Confidence 568899999998632110 01112347899999998754
No 493
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=62.67 E-value=17 Score=34.98 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=29.6
Q ss_pred cEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCC
Q 016750 30 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 30 ~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
..+.++|.||... +-...++.++.+|+++.||++.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 3689999999643 55677888999999999999964
No 494
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=60.74 E-value=19 Score=32.91 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=24.8
Q ss_pred cCcEEEEEeCCCCCChHHH-HHHhhhhcCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSYVPN-MISGASQADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~-~~~~~~~ad~~ilvvda~~ 65 (383)
+++.|.||||||..-.... ...+...||.+|+++.+..
T Consensus 114 ~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~ 152 (275)
T TIGR01287 114 DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 152 (275)
T ss_pred ccCCEEEEeccCcceecceeeccccccccEEEEEecchH
Confidence 3578999999985421110 1112346899999998765
No 495
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=60.11 E-value=61 Score=30.96 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=25.4
Q ss_pred CcEEEEEeCCCCCChHHHHHH-------hhhhcCEEEEEEECCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMIS-------GASQADIGVLVISARKG 66 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~-------~~~~ad~~ilvvda~~g 66 (383)
.....+|.|.|..+...-+.. ..-..|.++-|||+...
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~ 136 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAV 136 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchh
Confidence 346789999998775432221 11256889999999753
No 496
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=59.48 E-value=16 Score=34.14 Aligned_cols=69 Identities=23% Similarity=0.227 Sum_probs=40.6
Q ss_pred cCcEEEEEeCCCCC---ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC--CCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHK---SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~---~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~--i~~~ivviNK~D~ 102 (383)
+++.|.|+||||.. .+.. ..+...||.++++++...... .......+.++.++..+ ++.+-+++|+.+.
T Consensus 121 ~~yD~IliD~~~~~~~~g~~~--~~a~~~Ad~viVvt~~e~~sl----~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~ 194 (296)
T TIGR02016 121 WDFDFVLMDFLGDVVCGGFAT--PLARSLAEEVIVIGSNDRQSL----YVANNICNAVEYFRKLGGRVGLLGLVVNRDDG 194 (296)
T ss_pred ccCCEEEEecCCCcccccccc--chhhhhCCeEEEEecchHHHH----HHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC
Confidence 36889999998742 1111 112346899999987653221 00013344455555654 4446688999875
No 497
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.98 E-value=26 Score=35.78 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=46.6
Q ss_pred HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHH
Q 016750 44 VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFL 123 (383)
Q Consensus 44 ~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~ 123 (383)
.-..+.+++.+|.++|+..+..... .-...++..+...|+|..+.++ +||..++ +.....+++.+....
T Consensus 132 ~~~~lD~~kv~D~~~f~~s~~~~~~-------e~ge~i~~~~~~qGi~s~v~~v--~~L~sv~--~K~r~~vkK~l~~~~ 200 (754)
T KOG1980|consen 132 FLNILDAAKVSDFVVFLLSAVEEDD-------EFGEQIIRALEAQGIPSYVSVV--SDLSSVH--EKFRLDVKKALEKRI 200 (754)
T ss_pred hhhhhhhhhhcceeeeecchhhhhh-------HHHHHHHHHHhhcCCccceeee--cccchhc--hhhhHHHHHHHHHHH
Confidence 3367889999999999999985432 3445567888999999776666 6775454 333344444454444
No 498
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=58.87 E-value=62 Score=29.21 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=41.6
Q ss_pred cCcEEEEEeCCCCCC------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH----HHHHHHHcCCCeEEEEE
Q 016750 28 ETTRFTILDAPGHKS------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE----HVMLAKTLGVTKLLLVV 97 (383)
Q Consensus 28 ~~~~i~liDtPG~~~------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~----~~~~~~~~~i~~~ivvi 97 (383)
....+.++|+||+-+ -....++.+..-|+-+.+|...+..+- +.-.+... .+.-+..+..||+ =|+
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~yc---s~p~~~iS~lL~sl~tMl~melphV-Nvl 170 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYC---SDPSKFISSLLVSLATMLHMELPHV-NVL 170 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceee---CChHHHHHHHHHHHHHHHhhcccch-hhh
Confidence 356788999999644 456677777777776666655443321 10011111 1122234577864 689
Q ss_pred ecCCC
Q 016750 98 NKMDD 102 (383)
Q Consensus 98 NK~D~ 102 (383)
.|+|+
T Consensus 171 SK~Dl 175 (290)
T KOG1533|consen 171 SKADL 175 (290)
T ss_pred hHhHH
Confidence 99998
No 499
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=57.72 E-value=57 Score=29.24 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=38.6
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-H--HcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K--TLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~--~~~i~~~ivviNK~D~ 102 (383)
+++.|.|+||+|..... +..++..+|.+|+=.-.+.--. +...++..++... + ...+| .-|+.|++.-
T Consensus 82 ~~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~----~eA~~t~~~v~~~~~~~~~~ip-~~Vl~Tr~~~ 152 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDA----DEAAKTFKWVRRLEKAERRDIP-AAVLFTRVPA 152 (231)
T ss_pred cCCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHH----HHHHHHHHHHHHHHHhhCCCCC-eeEEEecCCc
Confidence 45689999999976544 3344567998877443332111 1012333333222 2 23578 4578999974
No 500
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=57.18 E-value=22 Score=33.60 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=49.5
Q ss_pred cEEEEEeCCCCCChHHHHHH--------hhhhcCEEEEEEECCCCccccccccCCch--HHHHHHHHHcCCCeEEEEEec
Q 016750 30 TRFTILDAPGHKSYVPNMIS--------GASQADIGVLVISARKGEFETGFEKGGQT--REHVMLAKTLGVTKLLLVVNK 99 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~--------~~~~ad~~ilvvda~~g~~~~~~~~~~~~--~~~~~~~~~~~i~~~ivviNK 99 (383)
....+|-|-|..+-.+-+.+ ..-..|.++-||||..-.. .... .....++... . ++++||
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~------~~~~~~~~~~~Qia~A--D--~ivlNK 154 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE------GLDAIAELAEDQLAFA--D--VIVLNK 154 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh------hHHHHHHHHHHHHHhC--c--EEEEec
Confidence 55788999997664332222 2224588999999987531 0111 1122333322 2 468999
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccc
Q 016750 100 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 141 (383)
Q Consensus 100 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 141 (383)
.|+ ++ .+.. +.+...+..++- ..+++..|.
T Consensus 155 ~Dl--v~--~~~l----~~l~~~l~~lnp----~A~i~~~~~ 184 (323)
T COG0523 155 TDL--VD--AEEL----EALEARLRKLNP----RARIIETSY 184 (323)
T ss_pred ccC--CC--HHHH----HHHHHHHHHhCC----CCeEEEccc
Confidence 999 54 2223 334444444431 457888765
Done!