Query 016750
Match_columns 383
No_of_seqs 316 out of 3100
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 03:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 9.3E-76 3.2E-80 575.3 44.3 373 1-378 66-439 (439)
2 1r5b_A Eukaryotic peptide chai 100.0 1.1E-71 3.6E-76 550.7 24.2 373 1-378 92-467 (467)
3 1f60_A Elongation factor EEF1A 100.0 1.3E-68 4.4E-73 527.4 36.3 371 1-379 56-442 (458)
4 3p26_A Elongation factor 1 alp 100.0 6.7E-68 2.3E-72 526.5 39.0 371 1-378 82-477 (483)
5 1jny_A EF-1-alpha, elongation 100.0 3.3E-68 1.1E-72 522.1 36.0 373 1-379 55-430 (435)
6 3izq_1 HBS1P, elongation facto 100.0 3.2E-67 1.1E-71 532.2 34.5 370 1-377 216-610 (611)
7 3mca_A HBS1, elongation factor 100.0 5E-66 1.7E-70 522.1 28.3 362 1-377 226-592 (592)
8 1zun_B Sulfate adenylate trans 100.0 1E-63 3.5E-68 490.3 37.0 356 1-375 75-434 (434)
9 1d2e_A Elongation factor TU (E 100.0 3.8E-57 1.3E-61 438.7 30.0 339 4-379 40-388 (397)
10 2c78_A Elongation factor TU-A; 100.0 5.8E-56 2E-60 431.8 33.4 344 4-378 49-405 (405)
11 3avx_A Elongation factor TS, e 100.0 6.1E-53 2.1E-57 440.5 31.4 340 4-381 333-681 (1289)
12 1wb1_A Translation elongation 100.0 1.3E-54 4.4E-59 429.7 11.8 336 3-378 46-395 (482)
13 2elf_A Protein translation elo 100.0 7.4E-51 2.5E-55 389.6 30.6 315 13-374 43-370 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 1.2E-48 4E-53 381.0 33.7 315 5-374 35-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 8.9E-49 3E-53 381.4 29.1 315 5-374 33-407 (408)
16 3sjy_A Translation initiation 100.0 3E-45 1E-49 356.0 32.9 309 11-374 51-402 (403)
17 3e1y_E Eukaryotic peptide chai 100.0 3.5E-44 1.2E-48 314.8 18.9 199 178-379 3-202 (204)
18 3vqt_A RF-3, peptide chain rel 100.0 2.5E-33 8.4E-38 280.7 21.2 232 3-265 73-401 (548)
19 2ywe_A GTP-binding protein LEP 100.0 7.3E-32 2.5E-36 270.9 22.5 232 2-266 40-282 (600)
20 3cb4_D GTP-binding protein LEP 100.0 6.5E-31 2.2E-35 264.5 23.6 232 2-266 38-280 (599)
21 4fn5_A EF-G 1, elongation fact 100.0 7.9E-31 2.7E-35 271.0 18.3 232 3-265 51-405 (709)
22 3j25_A Tetracycline resistance 100.0 3.5E-32 1.2E-36 277.6 1.8 233 3-264 40-330 (638)
23 3tr5_A RF-3, peptide chain rel 100.0 3.1E-29 1.1E-33 249.7 20.9 230 4-264 56-382 (528)
24 2rdo_7 EF-G, elongation factor 100.0 2.4E-28 8.2E-33 251.5 25.8 231 3-264 48-401 (704)
25 2h5e_A Peptide chain release f 100.0 3.3E-28 1.1E-32 242.6 20.6 240 4-264 56-383 (529)
26 1dar_A EF-G, elongation factor 100.0 2.3E-27 7.7E-32 244.0 22.5 233 3-266 50-395 (691)
27 2xex_A Elongation factor G; GT 99.9 1.1E-26 3.7E-31 239.0 21.0 232 3-265 48-394 (693)
28 3izy_P Translation initiation 99.9 4.2E-29 1.4E-33 247.9 1.0 227 10-266 31-261 (537)
29 2dy1_A Elongation factor G; tr 99.9 1E-26 3.5E-31 238.3 17.1 230 3-266 47-368 (665)
30 1zo1_I IF2, translation initia 99.9 4.7E-27 1.6E-31 231.3 11.8 217 12-264 33-258 (501)
31 1g7s_A Translation initiation 99.9 1.5E-25 5E-30 225.9 14.6 229 14-265 36-329 (594)
32 1n0u_A EF-2, elongation factor 99.9 1.2E-23 4.1E-28 220.5 18.9 250 3-264 55-473 (842)
33 4dcu_A GTP-binding protein ENG 99.5 4.5E-14 1.5E-18 138.8 10.9 127 11-152 224-361 (456)
34 2hjg_A GTP-binding protein ENG 99.5 2.9E-14 9.9E-19 139.4 8.9 128 10-152 203-341 (436)
35 2lkc_A Translation initiation 99.5 4.5E-15 1.5E-19 126.3 2.4 126 10-152 35-163 (178)
36 3iev_A GTP-binding protein ERA 99.5 1.2E-13 4E-18 128.8 8.9 124 11-152 39-174 (308)
37 4dhe_A Probable GTP-binding pr 99.4 4.8E-13 1.6E-17 118.3 10.6 126 12-151 60-202 (223)
38 1wf3_A GTP-binding protein; GT 99.4 9.7E-13 3.3E-17 122.1 11.0 117 14-152 39-165 (301)
39 2dyk_A GTP-binding protein; GT 99.4 1.1E-12 3.9E-17 109.3 8.0 118 10-151 29-153 (161)
40 1mky_A Probable GTP-binding pr 99.4 3.8E-12 1.3E-16 124.4 12.7 119 11-152 30-158 (439)
41 2hxs_A RAB-26, RAS-related pro 99.4 1.1E-12 3.8E-17 111.4 7.6 125 8-151 31-164 (178)
42 3qq5_A Small GTP-binding prote 99.3 1.5E-12 5.2E-17 125.8 8.7 120 9-152 61-188 (423)
43 3t1o_A Gliding protein MGLA; G 99.3 3.2E-12 1.1E-16 110.3 9.8 105 27-152 71-184 (198)
44 2il1_A RAB12; G-protein, GDP, 99.3 2.4E-12 8.3E-17 111.2 8.6 129 6-152 49-182 (192)
45 2efe_B Small GTP-binding prote 99.3 7E-13 2.4E-17 112.9 4.9 125 8-151 37-166 (181)
46 4bas_A ADP-ribosylation factor 99.3 5E-12 1.7E-16 109.4 10.0 120 16-152 49-181 (199)
47 3iby_A Ferrous iron transport 99.3 8.1E-13 2.8E-17 119.8 5.1 116 13-151 31-158 (256)
48 2hup_A RAS-related protein RAB 99.3 3.8E-12 1.3E-16 110.9 9.1 128 7-152 53-185 (201)
49 2fu5_C RAS-related protein RAB 99.3 2.4E-12 8.2E-17 110.0 7.4 127 6-152 31-163 (183)
50 1zj6_A ADP-ribosylation factor 99.3 5.8E-12 2E-16 108.2 9.8 119 17-151 47-169 (187)
51 3cph_A RAS-related protein SEC 99.3 3.4E-12 1.2E-16 111.7 8.4 123 10-152 47-174 (213)
52 3tkl_A RAS-related protein RAB 99.3 2.6E-12 8.8E-17 110.9 7.5 128 6-152 39-171 (196)
53 3i8s_A Ferrous iron transport 99.3 1.4E-12 4.9E-17 119.4 5.8 116 13-151 33-160 (274)
54 1g16_A RAS-related protein SEC 99.3 4E-12 1.4E-16 106.8 7.9 123 10-152 30-157 (170)
55 2fg5_A RAB-22B, RAS-related pr 99.3 3.2E-12 1.1E-16 110.4 7.5 118 15-151 57-177 (192)
56 1ega_A Protein (GTP-binding pr 99.3 2.7E-12 9.3E-17 119.1 7.4 119 14-152 40-167 (301)
57 3tw8_B RAS-related protein RAB 99.3 1.6E-12 5.5E-17 110.5 5.3 128 6-152 32-163 (181)
58 1r8s_A ADP-ribosylation factor 99.3 1.8E-11 6.3E-16 102.3 11.6 119 17-151 31-153 (164)
59 2h57_A ADP-ribosylation factor 99.3 6.9E-12 2.4E-16 107.9 8.8 122 14-151 51-178 (190)
60 1z0f_A RAB14, member RAS oncog 99.3 5.8E-12 2E-16 106.8 7.8 105 28-151 62-169 (179)
61 2gf9_A RAS-related protein RAB 99.3 3.6E-12 1.2E-16 109.6 6.6 107 27-152 68-177 (189)
62 2y8e_A RAB-protein 6, GH09086P 99.3 5.5E-12 1.9E-16 106.9 7.5 125 7-150 38-167 (179)
63 1wms_A RAB-9, RAB9, RAS-relate 99.3 1.9E-11 6.6E-16 103.5 10.9 125 8-151 32-165 (177)
64 3llu_A RAS-related GTP-binding 99.3 1.7E-11 5.7E-16 106.2 10.6 135 5-151 41-188 (196)
65 2hjg_A GTP-binding protein ENG 99.3 2.7E-12 9.4E-17 125.3 6.2 117 11-151 32-156 (436)
66 1svi_A GTP-binding protein YSX 99.3 1.4E-11 4.9E-16 106.2 9.9 119 13-151 55-186 (195)
67 3pqc_A Probable GTP-binding pr 99.3 1.8E-11 6.1E-16 105.3 10.3 106 29-151 67-185 (195)
68 3a1s_A Iron(II) transport prot 99.3 4.6E-12 1.6E-16 114.9 6.7 117 13-152 35-159 (258)
69 1f6b_A SAR1; gtpases, N-termin 99.3 1.3E-11 4.6E-16 107.1 9.3 120 16-150 55-189 (198)
70 1mky_A Probable GTP-binding pr 99.3 1.6E-11 5.3E-16 120.1 10.8 125 13-152 211-347 (439)
71 2p5s_A RAS and EF-hand domain 99.3 2.8E-11 9.5E-16 105.0 11.3 111 28-151 75-188 (199)
72 2h17_A ADP-ribosylation factor 99.3 1.3E-11 4.5E-16 105.4 9.1 118 17-150 52-173 (181)
73 1r2q_A RAS-related protein RAB 99.3 6.5E-12 2.2E-16 105.5 7.0 108 24-150 49-159 (170)
74 1upt_A ARL1, ADP-ribosylation 99.3 1.6E-11 5.4E-16 103.3 9.4 119 17-151 38-160 (171)
75 2bme_A RAB4A, RAS-related prot 99.3 3.6E-12 1.2E-16 109.1 5.3 126 8-152 35-165 (186)
76 2wji_A Ferrous iron transport 99.3 6.9E-12 2.4E-16 105.5 7.0 116 13-151 33-156 (165)
77 1m2o_B GTP-binding protein SAR 99.3 1.7E-11 5.7E-16 105.8 9.5 120 16-150 53-182 (190)
78 3clv_A RAB5 protein, putative; 99.3 1.3E-11 4.5E-16 106.8 8.8 103 30-152 93-196 (208)
79 1zd9_A ADP-ribosylation factor 99.2 1.7E-11 5.9E-16 105.4 9.1 118 17-150 54-175 (188)
80 3bc1_A RAS-related protein RAB 99.2 9.6E-12 3.3E-16 106.9 7.5 105 29-152 69-177 (195)
81 2g6b_A RAS-related protein RAB 99.2 2.4E-11 8.3E-16 103.2 10.0 120 14-152 42-166 (180)
82 1zbd_A Rabphilin-3A; G protein 99.2 2.4E-11 8.1E-16 105.6 10.0 106 28-152 55-163 (203)
83 1x3s_A RAS-related protein RAB 99.2 1.6E-11 5.4E-16 105.8 8.6 106 27-152 61-170 (195)
84 1ek0_A Protein (GTP-binding pr 99.2 1.1E-11 3.9E-16 103.9 7.6 122 13-150 33-159 (170)
85 1z0j_A RAB-22, RAS-related pro 99.2 9.7E-12 3.3E-16 104.5 7.0 118 15-151 40-160 (170)
86 2b6h_A ADP-ribosylation factor 99.2 3.1E-11 1.1E-15 104.3 10.2 119 17-151 60-182 (192)
87 2ew1_A RAS-related protein RAB 99.2 9.1E-12 3.1E-16 108.6 6.8 120 14-152 57-181 (201)
88 1ky3_A GTP-binding protein YPT 99.2 7.5E-12 2.6E-16 106.4 6.0 127 9-152 34-170 (182)
89 2a5j_A RAS-related protein RAB 99.2 5.5E-12 1.9E-16 108.7 5.2 121 13-152 51-176 (191)
90 3k53_A Ferrous iron transport 99.2 9.4E-12 3.2E-16 113.7 7.0 118 12-152 32-158 (271)
91 1xe1_A Hypothetical protein PF 99.2 4E-11 1.4E-15 92.2 9.2 80 179-262 32-113 (116)
92 1ksh_A ARF-like protein 2; sma 99.2 1.7E-11 5.9E-16 104.9 7.9 120 17-152 49-172 (186)
93 1fzq_A ADP-ribosylation factor 99.2 6.5E-11 2.2E-15 101.1 11.6 112 23-150 53-168 (181)
94 4dsu_A GTPase KRAS, isoform 2B 99.2 2.6E-11 9E-16 103.7 9.1 116 17-152 37-158 (189)
95 3dz8_A RAS-related protein RAB 99.2 6.5E-12 2.2E-16 108.3 5.0 118 16-152 58-178 (191)
96 2x77_A ADP-ribosylation factor 99.2 2.2E-11 7.6E-16 104.6 8.2 119 17-151 53-175 (189)
97 2yc2_C IFT27, small RAB-relate 99.2 1.5E-11 5.1E-16 107.1 7.2 117 18-152 57-184 (208)
98 3cpj_B GTP-binding protein YPT 99.2 5.6E-12 1.9E-16 111.6 4.3 125 9-152 39-168 (223)
99 1z08_A RAS-related protein RAB 99.2 7.3E-12 2.5E-16 105.3 4.8 119 14-151 37-160 (170)
100 2fh5_B SR-beta, signal recogni 99.2 4.2E-11 1.4E-15 105.0 9.8 116 22-150 43-206 (214)
101 1c1y_A RAS-related protein RAP 99.2 2.5E-11 8.6E-16 101.6 7.9 106 28-151 49-158 (167)
102 1z2a_A RAS-related protein RAB 99.2 8.1E-12 2.8E-16 104.7 4.8 115 18-151 40-158 (168)
103 2oil_A CATX-8, RAS-related pro 99.2 1.5E-11 5E-16 106.1 6.5 107 27-152 71-180 (193)
104 2bcg_Y Protein YP2, GTP-bindin 99.2 8.1E-12 2.8E-16 109.0 4.9 123 11-152 36-163 (206)
105 3r7w_A Gtpase1, GTP-binding pr 99.2 6.6E-11 2.3E-15 110.1 11.2 132 11-150 32-171 (307)
106 4dkx_A RAS-related protein RAB 99.2 1.5E-11 5.2E-16 108.4 6.6 130 4-152 34-168 (216)
107 4gzl_A RAS-related C3 botulinu 99.2 3E-11 1E-15 105.4 8.3 122 15-151 61-196 (204)
108 2o52_A RAS-related protein RAB 99.2 7.3E-12 2.5E-16 108.9 4.3 126 8-152 50-180 (200)
109 1moz_A ARL1, ADP-ribosylation 99.2 2.2E-11 7.5E-16 103.8 7.0 120 17-152 49-172 (183)
110 3o47_A ADP-ribosylation factor 99.2 5E-11 1.7E-15 112.0 10.0 119 17-151 196-318 (329)
111 1vg8_A RAS-related protein RAB 99.2 2.3E-11 8E-16 105.9 7.1 121 13-152 38-167 (207)
112 1kao_A RAP2A; GTP-binding prot 99.2 1.7E-11 5.7E-16 102.5 5.6 103 30-151 51-157 (167)
113 2erx_A GTP-binding protein DI- 99.2 9E-11 3.1E-15 98.5 10.2 103 29-150 50-157 (172)
114 2ce2_X GTPase HRAS; signaling 99.2 1.4E-10 4.9E-15 96.5 11.3 103 29-151 50-156 (166)
115 3b1v_A Ferrous iron uptake tra 99.2 1.2E-11 4.1E-16 113.0 5.0 114 14-151 34-155 (272)
116 1u8z_A RAS-related protein RAL 99.2 9.8E-11 3.4E-15 97.8 10.3 103 30-151 52-158 (168)
117 3gee_A MNME, tRNA modification 99.2 8.1E-11 2.8E-15 115.6 11.2 121 10-152 261-390 (476)
118 1z06_A RAS-related protein RAB 99.2 2.6E-11 8.8E-16 104.2 6.5 120 12-150 49-178 (189)
119 2qu8_A Putative nucleolar GTP- 99.2 1.4E-10 4.9E-15 102.9 11.4 127 14-152 60-197 (228)
120 2a9k_A RAS-related protein RAL 99.2 7.6E-11 2.6E-15 100.5 9.3 109 25-152 59-173 (187)
121 2f7s_A C25KG, RAS-related prot 99.2 5.3E-12 1.8E-16 111.1 2.0 105 29-152 83-191 (217)
122 2atx_A Small GTP binding prote 99.2 1.3E-10 4.3E-15 100.2 10.6 115 25-151 59-184 (194)
123 3l0i_B RAS-related protein RAB 99.2 1E-12 3.5E-17 114.2 -2.8 129 3-150 53-186 (199)
124 2gf0_A GTP-binding protein DI- 99.2 1.4E-10 4.8E-15 100.1 10.7 103 29-151 55-162 (199)
125 2gco_A H9, RHO-related GTP-bin 99.2 4E-11 1.4E-15 104.2 7.2 107 30-151 73-191 (201)
126 2bov_A RAla, RAS-related prote 99.2 1.6E-10 5.6E-15 100.3 11.2 111 23-152 53-169 (206)
127 2gj8_A MNME, tRNA modification 99.2 6.2E-11 2.1E-15 100.5 8.1 112 13-151 35-157 (172)
128 1xzp_A Probable tRNA modificat 99.2 1.1E-10 3.6E-15 114.9 10.8 115 13-152 274-397 (482)
129 4dcu_A GTP-binding protein ENG 99.2 2.9E-11 9.9E-16 118.7 6.8 117 11-151 52-176 (456)
130 2nzj_A GTP-binding protein REM 99.2 9.6E-11 3.3E-15 98.9 9.0 104 29-152 51-161 (175)
131 3con_A GTPase NRAS; structural 99.2 2.1E-10 7E-15 98.5 11.2 103 30-152 69-175 (190)
132 3gj0_A GTP-binding nuclear pro 99.2 4.6E-11 1.6E-15 105.4 7.3 118 14-152 48-167 (221)
133 2wjg_A FEOB, ferrous iron tran 99.1 3.9E-11 1.3E-15 102.8 6.4 118 12-152 36-161 (188)
134 4djt_A GTP-binding nuclear pro 99.1 2.9E-11 9.8E-16 106.4 5.5 104 30-152 61-167 (218)
135 1mh1_A RAC1; GTP-binding, GTPa 99.1 6.9E-11 2.4E-15 100.8 7.7 108 29-151 52-171 (186)
136 3t5g_A GTP-binding protein RHE 99.1 9.5E-12 3.2E-16 106.0 2.2 110 24-152 46-161 (181)
137 3q85_A GTP-binding protein REM 99.1 9.2E-11 3.1E-15 98.5 8.0 118 15-151 34-158 (169)
138 2fv8_A H6, RHO-related GTP-bin 99.1 8.5E-11 2.9E-15 102.7 7.9 109 30-152 73-192 (207)
139 3reg_A RHO-like small GTPase; 99.1 5.3E-11 1.8E-15 102.7 6.1 108 29-152 70-180 (194)
140 3bwd_D RAC-like GTP-binding pr 99.1 6.5E-11 2.2E-15 100.7 6.4 108 29-151 55-172 (182)
141 3oes_A GTPase rhebl1; small GT 99.1 3.9E-11 1.3E-15 104.3 4.8 107 27-152 69-179 (201)
142 3kkq_A RAS-related protein M-R 99.1 8.5E-11 2.9E-15 100.2 6.9 109 24-151 58-173 (183)
143 3lvq_E ARF-GAP with SH3 domain 99.1 1.6E-10 5.6E-15 114.7 9.9 121 16-152 352-476 (497)
144 2j0v_A RAC-like GTP-binding pr 99.1 8.9E-11 3.1E-15 102.7 7.0 108 30-152 57-172 (212)
145 2fn4_A P23, RAS-related protei 99.1 7.3E-11 2.5E-15 100.1 6.1 110 24-152 49-164 (181)
146 3q72_A GTP-binding protein RAD 99.1 1.8E-10 6.2E-15 96.3 8.5 107 27-152 46-156 (166)
147 2j1l_A RHO-related GTP-binding 99.1 2.3E-10 8E-15 100.5 9.0 108 30-152 82-201 (214)
148 2xtp_A GTPase IMAP family memb 99.1 7.5E-11 2.6E-15 106.9 5.6 124 15-152 56-200 (260)
149 2q3h_A RAS homolog gene family 99.0 6.7E-10 2.3E-14 96.2 9.9 115 23-152 59-187 (201)
150 3th5_A RAS-related C3 botulinu 98.6 2.2E-11 7.5E-16 106.1 0.0 112 29-152 77-197 (204)
151 3lxw_A GTPase IMAP family memb 99.0 8.3E-10 2.8E-14 99.4 10.1 121 14-151 54-199 (247)
152 3t5d_A Septin-7; GTP-binding p 99.0 1.2E-09 4E-14 99.9 10.7 120 13-151 46-195 (274)
153 3q3j_B RHO-related GTP-binding 99.0 5.4E-10 1.8E-14 98.2 8.0 110 28-152 73-195 (214)
154 2atv_A RERG, RAS-like estrogen 99.0 1.7E-09 5.9E-14 93.3 9.7 104 29-152 75-183 (196)
155 2wkq_A NPH1-1, RAS-related C3 99.0 7E-10 2.4E-14 103.8 7.6 122 15-151 186-321 (332)
156 3c5c_A RAS-like protein 12; GD 99.0 3.6E-10 1.2E-14 97.0 5.0 103 29-151 68-177 (187)
157 1m7b_A RND3/RHOE small GTP-bin 99.0 9.3E-10 3.2E-14 94.0 7.5 109 28-151 53-174 (184)
158 1lnz_A SPO0B-associated GTP-bi 99.0 4.9E-10 1.7E-14 105.4 6.0 121 14-152 189-322 (342)
159 2cxx_A Probable GTP-binding pr 98.9 1.5E-09 5.1E-14 92.8 8.0 131 8-152 26-176 (190)
160 3ihw_A Centg3; RAS, centaurin, 98.9 1.2E-09 4.3E-14 93.4 7.5 108 24-152 59-172 (184)
161 3geh_A MNME, tRNA modification 98.9 3.7E-10 1.3E-14 110.5 4.6 113 14-152 256-376 (462)
162 3cbq_A GTP-binding protein REM 98.9 1.9E-09 6.6E-14 93.2 8.5 120 14-152 54-180 (195)
163 3r7w_B Gtpase2, GTP-binding pr 98.9 8.6E-10 2.9E-14 102.3 6.4 128 14-152 31-166 (331)
164 2iwr_A Centaurin gamma 1; ANK 98.9 1E-09 3.4E-14 93.0 6.3 102 30-152 54-161 (178)
165 2qtf_A Protein HFLX, GTP-bindi 98.9 2.4E-09 8.2E-14 101.7 9.1 127 11-152 207-346 (364)
166 1gwn_A RHO-related GTP-binding 98.9 1.7E-09 5.6E-14 94.4 7.4 108 29-151 75-195 (205)
167 1nrj_B SR-beta, signal recogni 98.9 2.2E-09 7.5E-14 94.2 7.3 107 28-147 53-171 (218)
168 1cip_A Protein (guanine nucleo 98.9 2.8E-09 9.7E-14 100.6 7.9 136 13-152 176-336 (353)
169 2aka_B Dynamin-1; fusion prote 98.9 2.4E-09 8.2E-14 98.8 6.6 107 29-152 124-245 (299)
170 2zej_A Dardarin, leucine-rich 98.8 4.2E-09 1.4E-13 90.0 6.4 112 28-151 54-169 (184)
171 3lxx_A GTPase IMAP family memb 98.8 7.7E-09 2.6E-13 92.3 8.4 123 13-150 61-204 (239)
172 3dpu_A RAB family protein; roc 98.8 3E-09 1E-13 106.5 5.7 102 29-152 97-200 (535)
173 2e87_A Hypothetical protein PH 98.8 3.8E-08 1.3E-12 93.3 11.9 120 14-152 198-328 (357)
174 1jwy_B Dynamin A GTPase domain 98.8 4.4E-09 1.5E-13 97.9 5.2 81 15-103 115-211 (315)
175 1zcb_A G alpha I/13; GTP-bindi 98.8 9.7E-09 3.3E-13 97.3 7.3 137 12-152 183-345 (362)
176 2p67_A LAO/AO transport system 98.7 9.2E-09 3.2E-13 97.0 6.7 107 27-152 146-253 (341)
177 2g3y_A GTP-binding protein GEM 98.7 1.3E-08 4.4E-13 89.3 6.0 110 23-152 78-195 (211)
178 3ohm_A Guanine nucleotide-bind 98.7 6.3E-09 2.1E-13 96.9 4.1 136 13-152 150-310 (327)
179 3p32_A Probable GTPase RV1496/ 98.7 2.1E-08 7.3E-13 95.0 6.9 108 26-152 168-276 (355)
180 3def_A T7I23.11 protein; chlor 98.7 3.2E-08 1.1E-12 89.7 7.2 84 13-103 67-164 (262)
181 1h65_A Chloroplast outer envel 98.6 1E-07 3.4E-12 86.8 9.8 84 13-103 70-167 (270)
182 1pui_A ENGB, probable GTP-bind 98.6 1.7E-07 5.8E-12 81.4 10.3 120 13-151 58-190 (210)
183 4fid_A G protein alpha subunit 98.6 5.4E-08 1.8E-12 91.0 6.9 140 12-152 143-320 (340)
184 3zvr_A Dynamin-1; hydrolase, D 98.6 2.5E-08 8.5E-13 102.3 4.9 121 15-152 134-270 (772)
185 1u0l_A Probable GTPase ENGC; p 98.6 6.4E-08 2.2E-12 89.6 7.1 102 30-151 63-164 (301)
186 2cjw_A GTP-binding protein GEM 98.6 6.7E-08 2.3E-12 83.2 6.6 118 16-152 40-164 (192)
187 1azs_C GS-alpha; complex (lyas 98.6 1E-07 3.5E-12 91.1 8.2 87 12-102 199-296 (402)
188 2j69_A Bacterial dynamin-like 98.6 7.8E-08 2.7E-12 98.9 7.5 65 30-102 174-242 (695)
189 2ged_A SR-beta, signal recogni 98.6 1.2E-07 4E-12 81.2 7.4 71 28-104 89-170 (193)
190 1wxq_A GTP-binding protein; st 98.6 9.4E-08 3.2E-12 91.7 7.4 37 30-66 71-114 (397)
191 2f9l_A RAB11B, member RAS onco 98.5 9.2E-08 3.1E-12 82.6 6.3 118 16-152 38-160 (199)
192 2xtz_A Guanine nucleotide-bind 98.5 1.3E-07 4.5E-12 89.2 6.8 86 13-102 160-262 (354)
193 1yrb_A ATP(GTP)binding protein 98.5 1.5E-07 5.1E-12 84.9 6.8 107 29-152 108-249 (262)
194 2qag_A Septin-2, protein NEDD5 98.5 2.4E-07 8.2E-12 87.9 8.1 118 14-150 77-223 (361)
195 3c5h_A Glucocorticoid receptor 98.5 1.6E-07 5.6E-12 84.6 6.4 79 53-151 162-246 (255)
196 2qpt_A EH domain-containing pr 98.4 3.2E-07 1.1E-11 91.8 7.7 79 30-120 154-244 (550)
197 3t34_A Dynamin-related protein 98.4 1.4E-07 4.9E-12 89.5 4.8 105 29-151 135-252 (360)
198 2x2e_A Dynamin-1; nitration, h 98.4 1.7E-07 5.8E-12 88.7 5.3 122 14-152 113-250 (353)
199 1puj_A YLQF, conserved hypothe 98.4 1.8E-06 6.3E-11 78.8 10.5 95 34-152 3-98 (282)
200 2yv5_A YJEQ protein; hydrolase 98.3 8.7E-07 3E-11 81.9 7.7 96 40-152 66-161 (302)
201 2www_A Methylmalonic aciduria 98.3 6.2E-07 2.1E-11 84.6 6.7 108 26-152 163-271 (349)
202 1udx_A The GTP-binding protein 98.3 2.5E-06 8.4E-11 82.1 10.7 119 16-152 190-317 (416)
203 1oix_A RAS-related protein RAB 98.3 4.8E-07 1.6E-11 77.6 5.2 117 16-151 62-183 (191)
204 2wsm_A Hydrogenase expression/ 98.2 6.8E-07 2.3E-11 78.3 2.9 101 27-152 106-206 (221)
205 3ec1_A YQEH GTPase; atnos1, at 98.1 4E-06 1.4E-10 79.7 7.5 103 32-151 51-153 (369)
206 3cnl_A YLQF, putative uncharac 98.0 5.1E-06 1.8E-10 75.0 6.1 88 37-151 4-92 (262)
207 3l82_B F-box only protein 4; T 98.0 1E-05 3.5E-10 69.6 7.5 95 38-150 110-213 (227)
208 2qm8_A GTPase/ATPase; G protei 98.0 1E-05 3.6E-10 75.8 7.8 110 25-152 143-253 (337)
209 3h2y_A GTPase family protein; 98.0 5.8E-06 2E-10 78.5 5.1 96 40-151 56-151 (368)
210 1t9h_A YLOQ, probable GTPase E 97.9 1.8E-05 6.1E-10 73.0 6.5 87 49-151 82-168 (307)
211 4a9a_A Ribosome-interacting GT 97.8 2.2E-05 7.7E-10 74.3 6.5 82 13-103 102-195 (376)
212 1d1n_A Initiation factor 2; be 97.7 3.4E-05 1.2E-09 57.6 4.4 76 185-262 10-90 (99)
213 3l2o_B F-box only protein 4; s 97.7 6.7E-05 2.3E-09 67.7 7.0 96 37-150 194-298 (312)
214 2crv_A IF-2MT, translation ini 97.7 0.00015 5.3E-09 56.0 7.8 79 183-263 12-99 (120)
215 1jal_A YCHF protein; nucleotid 97.6 0.00019 6.4E-09 67.6 9.2 53 13-65 32-108 (363)
216 2j37_W Signal recognition part 97.6 4.2E-05 1.4E-09 75.2 4.4 67 27-103 181-253 (504)
217 2qnr_A Septin-2, protein NEDD5 97.5 0.00018 6.1E-09 66.2 7.7 79 55-152 128-206 (301)
218 2dby_A GTP-binding protein; GD 97.4 0.00041 1.4E-08 65.5 8.7 37 29-65 68-111 (368)
219 2qag_C Septin-7; cell cycle, c 97.3 0.00044 1.5E-08 66.4 7.9 100 31-149 89-216 (418)
220 2rcn_A Probable GTPase ENGC; Y 97.3 0.00048 1.7E-08 64.6 7.9 83 51-151 128-210 (358)
221 1zo1_I IF2, translation initia 97.2 0.0011 3.8E-08 65.1 9.1 78 183-262 410-492 (501)
222 2hf9_A Probable hydrogenase ni 97.0 0.00098 3.4E-08 58.0 6.0 99 29-152 118-216 (226)
223 3dm5_A SRP54, signal recogniti 96.9 0.0038 1.3E-07 60.1 10.2 96 28-151 181-282 (443)
224 1j8m_F SRP54, signal recogniti 96.9 0.004 1.4E-07 56.9 10.0 95 28-150 179-281 (297)
225 2v3c_C SRP54, signal recogniti 96.9 0.0055 1.9E-07 59.1 10.8 65 28-102 179-250 (432)
226 1g7s_A Translation initiation 96.7 0.0083 2.8E-07 60.3 10.9 83 180-263 462-549 (594)
227 3kl4_A SRP54, signal recogniti 96.7 0.0061 2.1E-07 58.6 9.5 94 28-150 178-280 (433)
228 3izy_P Translation initiation 96.6 0.0049 1.7E-07 61.0 8.2 94 166-261 432-534 (537)
229 3ec1_A YQEH GTPase; atnos1, at 96.1 0.00016 5.3E-09 68.6 -5.6 79 13-102 198-286 (369)
230 3h2y_A GTPase family protein; 96.0 0.00019 6.6E-09 67.9 -5.2 113 13-149 197-319 (368)
231 2ph1_A Nucleotide-binding prot 95.6 0.023 7.7E-07 50.7 7.0 68 28-102 127-194 (262)
232 3kjh_A CO dehydrogenase/acetyl 95.4 0.016 5.4E-07 50.9 5.3 67 27-102 129-195 (254)
233 4dzz_A Plasmid partitioning pr 95.2 0.056 1.9E-06 45.8 7.9 64 28-102 74-142 (206)
234 2xxa_A Signal recognition part 95.2 0.028 9.7E-07 54.1 6.5 64 28-102 182-252 (433)
235 1g3q_A MIND ATPase, cell divis 95.1 0.026 8.8E-07 49.2 5.6 66 28-102 110-175 (237)
236 2qag_B Septin-6, protein NEDD5 95.1 0.043 1.5E-06 52.5 7.4 67 56-141 151-217 (427)
237 1hyq_A MIND, cell division inh 95.0 0.027 9.2E-07 50.0 5.4 66 28-102 109-174 (263)
238 2ohf_A Protein OLA1, GTP-bindi 94.9 0.016 5.6E-07 54.9 3.8 53 13-65 52-128 (396)
239 3cwq_A Para family chromosome 94.5 0.078 2.7E-06 45.5 6.9 65 28-102 66-132 (209)
240 3la6_A Tyrosine-protein kinase 93.6 0.13 4.3E-06 46.6 6.8 66 29-102 201-266 (286)
241 1wcv_1 SOJ, segregation protei 93.6 0.25 8.6E-06 43.6 8.6 66 28-102 110-181 (257)
242 1tq4_A IIGP1, interferon-induc 93.5 0.18 6.2E-06 48.1 7.8 109 31-152 121-245 (413)
243 3bfv_A CAPA1, CAPB2, membrane 93.3 0.12 4E-06 46.4 6.0 66 29-102 191-256 (271)
244 3ea0_A ATPase, para family; al 93.2 0.061 2.1E-06 47.0 3.9 66 28-102 117-184 (245)
245 2oze_A ORF delta'; para, walke 92.9 0.32 1.1E-05 43.8 8.3 66 28-102 153-224 (298)
246 3cio_A ETK, tyrosine-protein k 92.8 0.25 8.6E-06 44.9 7.5 66 29-102 213-278 (299)
247 3k9g_A PF-32 protein; ssgcid, 92.7 0.27 9.3E-06 43.5 7.4 65 28-102 143-209 (267)
248 2ffh_A Protein (FFH); SRP54, s 92.6 0.17 5.8E-06 48.4 6.2 64 28-102 179-249 (425)
249 3q9l_A Septum site-determining 92.0 0.13 4.5E-06 45.2 4.4 65 29-102 113-185 (260)
250 2xj4_A MIPZ; replication, cell 91.9 0.21 7.1E-06 45.0 5.7 36 28-65 102-137 (286)
251 3e70_C DPA, signal recognition 91.4 0.5 1.7E-05 43.6 7.8 93 29-150 211-310 (328)
252 1zu4_A FTSY; GTPase, signal re 91.3 0.28 9.7E-06 45.1 5.9 64 28-102 190-266 (320)
253 1vma_A Cell division protein F 90.2 0.47 1.6E-05 43.3 6.3 64 28-102 185-261 (306)
254 3end_A Light-independent proto 89.4 0.47 1.6E-05 43.0 5.8 67 28-102 155-225 (307)
255 3sop_A Neuronal-specific septi 89.2 0.62 2.1E-05 41.6 6.2 63 54-129 112-175 (270)
256 1ls1_A Signal recognition part 88.5 0.68 2.3E-05 41.9 6.0 64 28-102 179-249 (295)
257 1ni3_A YCHF GTPase, YCHF GTP-b 87.8 0.59 2E-05 44.2 5.3 52 14-65 52-127 (392)
258 3ez9_A Para; DNA binding, wing 87.7 0.71 2.4E-05 43.7 5.9 73 28-102 246-322 (403)
259 1byi_A Dethiobiotin synthase; 87.6 1.6 5.4E-05 37.2 7.6 68 28-102 107-179 (224)
260 3ug7_A Arsenical pump-driving 86.2 3.1 0.00011 38.4 9.3 86 54-149 237-324 (349)
261 3zq6_A Putative arsenical pump 85.9 2.5 8.7E-05 38.5 8.4 85 55-149 223-309 (324)
262 4he6_A Peptidase family U32; u 85.2 0.63 2.2E-05 33.8 3.1 54 203-260 27-85 (89)
263 1cp2_A CP2, nitrogenase iron p 85.0 1.6 5.3E-05 38.4 6.4 68 28-102 114-186 (269)
264 2yhs_A FTSY, cell division pro 84.9 1.8 6.2E-05 42.1 7.1 64 28-102 374-450 (503)
265 2px0_A Flagellar biosynthesis 84.0 0.67 2.3E-05 42.0 3.5 65 28-102 181-251 (296)
266 2afh_E Nitrogenase iron protei 83.8 1.4 4.6E-05 39.5 5.4 68 28-102 117-189 (289)
267 3szr_A Interferon-induced GTP- 83.3 1.6 5.5E-05 43.8 6.2 68 29-103 146-227 (608)
268 3ez2_A Plasmid partition prote 82.6 2.2 7.5E-05 40.1 6.6 73 28-102 243-319 (398)
269 1rj9_A FTSY, signal recognitio 81.7 4.2 0.00015 36.8 7.9 63 29-102 184-259 (304)
270 1ihu_A Arsenical pump-driving 77.8 2.4 8.3E-05 42.2 5.3 43 53-102 489-531 (589)
271 1f5n_A Interferon-induced guan 76.2 0.96 3.3E-05 45.1 1.8 39 28-68 89-135 (592)
272 2woj_A ATPase GET3; tail-ancho 75.4 4.7 0.00016 37.4 6.3 42 53-101 234-275 (354)
273 3iqw_A Tail-anchored protein t 75.0 11 0.00036 34.6 8.5 65 55-126 223-291 (334)
274 3io3_A DEHA2D07832P; chaperone 74.9 14 0.00047 34.1 9.3 85 55-149 232-321 (348)
275 3qxc_A Dethiobiotin synthetase 70.5 19 0.00064 31.3 8.6 67 28-102 130-201 (242)
276 2woo_A ATPase GET3; tail-ancho 67.4 31 0.0011 31.2 9.9 41 55-102 222-262 (329)
277 3of5_A Dethiobiotin synthetase 65.8 14 0.00048 31.6 6.8 68 28-102 109-181 (228)
278 1ihu_A Arsenical pump-driving 60.0 13 0.00043 36.9 6.1 40 56-102 200-239 (589)
279 2og2_A Putative signal recogni 56.6 30 0.001 31.9 7.7 63 29-102 240-315 (359)
280 3b9q_A Chloroplast SRP recepto 55.7 33 0.0011 30.7 7.6 62 30-102 184-258 (302)
281 3pg5_A Uncharacterized protein 50.1 14 0.00049 34.0 4.4 35 29-65 153-187 (361)
282 1puj_A YLQF, conserved hypothe 40.9 13 0.00043 33.1 2.3 27 12-41 150-176 (282)
283 3fgn_A Dethiobiotin synthetase 39.8 62 0.0021 28.1 6.6 67 28-101 125-197 (251)
284 3fkq_A NTRC-like two-domain pr 39.2 21 0.00073 32.9 3.7 36 28-65 258-293 (373)
285 1s2d_A Purine trans deoxyribos 37.9 53 0.0018 26.6 5.4 41 47-96 75-115 (167)
286 1f8y_A Nucleoside 2-deoxyribos 32.6 39 0.0014 27.0 3.8 43 47-98 72-114 (157)
287 3ehd_A Uncharacterized conserv 32.6 42 0.0015 27.1 4.0 46 44-98 60-105 (162)
288 3abz_A Beta-glucosidase I; gly 31.2 1.1E+02 0.0037 31.8 7.7 54 44-98 564-622 (845)
289 3v7e_A Ribosome-associated pro 30.4 46 0.0016 23.3 3.4 48 45-102 17-65 (82)
290 2f62_A Nucleoside 2-deoxyribos 29.2 47 0.0016 26.7 3.7 48 45-98 59-106 (161)
291 3j20_R 30S ribosomal protein S 28.6 1.7E+02 0.0059 21.9 6.4 50 193-244 30-88 (113)
292 3zyz_A Beta-D-glucoside glucoh 27.1 1.2E+02 0.0041 30.8 7.1 54 44-98 418-481 (713)
293 3j21_Z 50S ribosomal protein L 26.6 72 0.0025 23.1 4.1 48 45-102 21-70 (99)
294 3lnn_A Membrane fusion protein 25.3 3.6E+02 0.012 24.0 10.2 89 209-302 196-284 (359)
295 3kbg_A 30S ribosomal protein S 25.2 1.3E+02 0.0043 25.4 5.7 47 329-379 118-165 (213)
296 3fwy_A Light-independent proto 25.0 82 0.0028 28.2 4.9 36 28-64 162-197 (314)
297 3iz6_D 40S ribosomal protein S 23.8 1.3E+02 0.0045 26.2 5.7 47 328-378 153-200 (265)
298 2khz_A C-MYC-responsive protei 23.2 92 0.0032 24.9 4.5 45 46-101 70-114 (165)
299 3do6_A Formate--tetrahydrofola 21.8 1.1E+02 0.0039 29.3 5.2 43 77-128 348-390 (543)
300 4fyk_A Deoxyribonucleoside 5'- 21.5 1E+02 0.0034 24.5 4.2 44 44-98 59-102 (152)
301 3v7q_A Probable ribosomal prot 20.2 56 0.0019 23.8 2.3 48 45-102 25-73 (101)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=9.3e-76 Score=575.33 Aligned_cols=373 Identities=56% Similarity=0.942 Sum_probs=354.8
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||++|..++||+||+|++..+..+++++++++|||||||++|.++|..+++.+|++|||||+++|.++++|+..+|+++
T Consensus 66 ~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e 145 (439)
T 3j2k_7 66 LSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE 145 (439)
T ss_pred hhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999888887889999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+..+..+++|++|+++||||++..+|++.+++++.+++..+++.+++.+..+++++|+||++|.|+.++.+ .++||.
T Consensus 146 ~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~--~~~w~~ 223 (439)
T 3j2k_7 146 HAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD--FCPWYI 223 (439)
T ss_pred HHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc--cccccC
Confidence 999999999998999999999976778888999999999999999998644467899999999999999876 589999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGE 240 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~ 240 (383)
|++|++.|+.++++.+..++|++|+|+++|++.|++++|+|.+|+|++||.|.++|.+..++|++|+++++++++|.|||
T Consensus 224 g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~ 303 (439)
T 3j2k_7 224 GLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGE 303 (439)
T ss_pred chHHHHHHHhCCCCccCCCCCeEEEEEEEEcCCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCC
Confidence 99999999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCC
Q 016750 241 NLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTK 319 (383)
Q Consensus 241 ~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~ 319 (383)
+|+++|+|++..++++|++|++++.+++.++.|+|++.| +++ +++..||++.+|+|+.+++|+|..|.+++|.+||
T Consensus 304 ~v~~~l~gi~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~ 380 (439)
T 3j2k_7 304 NLKIRLKGIEEEEILPGFILCDPSNLCHSGRTFDVQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSG 380 (439)
T ss_pred cceEEEeccchhhcCCcEEecCCCCCCceeeEEEEEEEE---eCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCch
Confidence 999999999999999999999999888889999999999 666 5699999999999999999999999999999999
Q ss_pred cccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 016750 320 KPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 378 (383)
Q Consensus 320 ~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~ 378 (383)
+..+.+|++|+.||.+.|+|++.+|+|+|+|++++.+|||+|||+|+|+|+|+|+++.+
T Consensus 381 ~~~~~~~~~l~~~~~~~v~~~~~~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~~ 439 (439)
T 3j2k_7 381 EKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439 (439)
T ss_pred hhhccCcceecCCcEEEEEEEeCCeEEEeeccccccCCCEEEEECCceEEEEEEEEecC
Confidence 98888999999999999999999999999999999999999999999999999999863
No 2
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.1e-71 Score=550.65 Aligned_cols=373 Identities=50% Similarity=0.911 Sum_probs=316.8
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|+|++|..++||+||+|++..+..++++++.++|||||||++|.++|..+++.+|++|||||++++.++++|+..+|+++
T Consensus 92 ~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e 171 (467)
T 1r5b_A 92 LSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE 171 (467)
T ss_dssp ---------------------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH
T ss_pred hhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999998888887789999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc-CCCCCCCceEEEccccccccccccccCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWW 159 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~ 159 (383)
|+..+..+++|++|+++||||+..++|++++++.+.+++..+++.+ ++.+..+++++|+||++|.|+.++.+...++||
T Consensus 172 ~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~ 251 (467)
T 1r5b_A 172 HAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWY 251 (467)
T ss_dssp HHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSC
T ss_pred HHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccc
Confidence 9999999999889999999999766778889999999999999887 764212468999999999999998876678999
Q ss_pred CcccHHHHhhccCCCCCCCCCCeeEEEEEEEccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC-CccceecCC
Q 016750 160 NGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGP 238 (383)
Q Consensus 160 ~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~a 238 (383)
.|++|++.|+.++++.+..++|++++|+++|++.|++++|+|.+|+|++||.|.++|.+...+|++|+++ ++++++|.|
T Consensus 252 ~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~~~~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~a 331 (467)
T 1r5b_A 252 QGPSLLEYLDSMTHLERKVNAPFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSIC 331 (467)
T ss_dssp CSCCHHHHHHHCCCCHHHHTSCCEEECCEEEESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEET
T ss_pred cchhHHHHHHhCCCCcCCCCCCcEEEEEEEEeCCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcC
Confidence 9999999999998887777899999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecC
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLK 317 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~ 317 (383)
||+|+++|+| +..++++|++|++++.++..+..|+|++.| +++ +++..||++.+|+++.+++|++..|.+++|.
T Consensus 332 G~~v~i~l~g-~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~---l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~- 406 (467)
T 1r5b_A 332 GDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAI---LELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK- 406 (467)
T ss_dssp TCEEEEEEES-CCTTCCTTCEEECSSSCCCEEEEEEEEEEE---CSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-
T ss_pred CCEEEEEEec-cHhhCCceEEEeCCCCCCccceEEEEEEEE---eCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-
Confidence 9999999999 889999999999998889999999999999 555 6799999999999999999999998888998
Q ss_pred CCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 016750 318 TKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 378 (383)
Q Consensus 318 ~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~ 378 (383)
+++..+++|++|++||.+.|+|++.+|+|+++|.+++.||||+|||+|+|+|+|+|+++.+
T Consensus 407 ~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~~ 467 (467)
T 1r5b_A 407 TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467 (467)
T ss_dssp SCCCCSSCCSBCCTTCBCCEEEEEEEEEECCCTTTCHHHHEEEEECSSSCEEEEEEEEEEC
T ss_pred CccccccCccccCCCCEEEEEEEECcEEEEEEcCcCCCCccEEEEECCeEEEEEEEEEecC
Confidence 8887778899999999999999999999999999999999999999999999999998753
No 3
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=1.3e-68 Score=527.39 Aligned_cols=371 Identities=36% Similarity=0.663 Sum_probs=344.3
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|||++|..++||+||+|++..+..+++++++++|||||||++|.+++..+++.+|++|||||++++.++++|+...|+++
T Consensus 56 ~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~ 135 (458)
T 1f60_A 56 YAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE 135 (458)
T ss_dssp HHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH
T ss_pred hhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999887767766679999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+..+..+++|++|+++||+|+ .++++++++++.+++..+++.+++.+ .+++++|+||++|.|+.++.+ .++||.
T Consensus 136 ~~~~~~~~~v~~iivviNK~Dl--~~~~~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~vSA~~g~nv~~~~~--~~~~~~ 210 (458)
T 1f60_A 136 HALLAFTLGVRQLIVAVNKMDS--VKWDESRFQEIVKETSNFIKKVGYNP-KTVPFVPISGWNGDNMIEATT--NAPWYK 210 (458)
T ss_dssp HHHHHHHTTCCEEEEEEECGGG--GTTCHHHHHHHHHHHHHHHHHHTCCG-GGCCEEECCTTTCBTTTBCCS--SCTTCC
T ss_pred HHHHHHHcCCCeEEEEEEcccc--ccCCHHHHHHHHHHHHHHHHHcCCCc-cCceEEEeecccCcCcccccc--cCchhh
Confidence 9999999999889999999999 66677888899999999999888742 136899999999999998765 379997
Q ss_pred ------------cccHHHHhhccCCCCCCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEE
Q 016750 161 ------------GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAI 226 (383)
Q Consensus 161 ------------g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI 226 (383)
|++|++.|+.+++|.+..+.|++|+|+++|+ +.|++++|+|++|.+++||+|.+.|.+..++|++|
T Consensus 211 ~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i 290 (458)
T 1f60_A 211 GWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSV 290 (458)
T ss_dssp CEEEECSSSEEEESSHHHHHHTSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEE
T ss_pred cccccccccccchHHHHHHhhccCCCcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEE
Confidence 6789999999988888899999999999995 79999999999999999999999999999999999
Q ss_pred EECCccceecCCCCeEEEEEecCCccCceeeEEEecCCC-CcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEE
Q 016750 227 YCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEE 304 (383)
Q Consensus 227 ~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~ 304 (383)
+++++++++|.|||+|+++|+|++..++++|++|+.++. ++..+.+|+|++.| +++ .++..||++.+|+|+.+++
T Consensus 291 ~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~ 367 (458)
T 1f60_A 291 EMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIV---LNHPGQISAGYSPVLDCHTAHIA 367 (458)
T ss_dssp EETTEECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTSSCCCCCSEEEEEEEE---CSCSCCBCTTCCCEEEETTEEEE
T ss_pred EECCeEEEEEcCCCEEEEEEcCCcccccCceeEEecCCCCCCceeeEEEEEEEE---eCCCCCCCCCCEEEEEeccceEE
Confidence 999999999999999999999999999999999999974 88999999999999 554 6899999999999999999
Q ss_pred EEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 016750 305 CEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 379 (383)
Q Consensus 305 ~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~ 379 (383)
|+|..|.+++|.+|++..+++|++|++||.+.|+|+|.+|+|+++|.+++.+|||+|||+|+|+|+|+|+++.+.
T Consensus 368 ~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 368 CRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp EEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred EEEEEEEeEecCccccccccCccccCCCCEEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 999999999999999988889999999999999999999999999999999999999999999999999998775
No 4
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=6.7e-68 Score=526.46 Aligned_cols=371 Identities=33% Similarity=0.568 Sum_probs=323.4
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|+|++|.+++|++||+|++..+..+++++.+++|||||||++|.+++..+++.+|++|+|||++.+.++++++...|+++
T Consensus 82 ~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e 161 (483)
T 3p26_A 82 FAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE 161 (483)
T ss_dssp -------------CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH
T ss_pred hhhhhccchhHhhcCcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999987777665679999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCC-CCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSL-CPWW 159 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~-~~w~ 159 (383)
|+..+..++++++|+|+||+|+ .++++.+++++.+++..+++.+++.. ..++++++||++|+|+.++.+... ++||
T Consensus 162 ~~~~~~~~~~~~iIvviNK~Dl--~~~~~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~iSA~~g~gi~el~~~~~~~~wy 238 (483)
T 3p26_A 162 HMLLASSLGIHNLIIAMNKMDN--VDWSQQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWY 238 (483)
T ss_dssp HHHHHHHTTCCCEEEEEECGGG--GTTCHHHHHHHHHHHHHHHHHHTCCG-GGEEEEECCSSSCTTSSSSCCCHHHHHHC
T ss_pred HHHHHHHcCCCcEEEEEECcCc--ccchHHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeeecCCCccccCccccccccc
Confidence 9999999998779999999999 66778889999999999999888752 247899999999999999764321 6899
Q ss_pred CcccHHHHhhcc----CC--CCCCCCCCeeEEEEEEEc-----cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEE
Q 016750 160 NGPCLFEALDRI----EI--TPRDPNGPFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC 228 (383)
Q Consensus 160 ~g~~L~~~l~~~----~~--~~~~~~~p~~~~I~~~~~-----~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~ 228 (383)
+|++|++.|+.+ +. |....+.|++|+|+++|+ +.|+|++|+|.+|+|++||.|.++|++..++|++|++
T Consensus 239 ~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~ 318 (483)
T 3p26_A 239 NGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV 318 (483)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhhcccccccccCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEE
Confidence 999999988876 22 556788999999999995 5789999999999999999999999999999999999
Q ss_pred CC--------ccceecCCCCeEEEEEecCCccCceeeEEEecCCC-CcccccEEEEEEEEeccccc-ccccCCcEEEEEE
Q 016750 229 DD--------NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHI 298 (383)
Q Consensus 229 ~~--------~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~ 298 (383)
++ +++++|.|||+|+|+|++++..++++|++|++++. ++..+..|+|++.| +++ .++..|+++.+|+
T Consensus 319 ~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~---l~~~~~l~~g~~~~l~~ 395 (483)
T 3p26_A 319 GSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTT---FDMNRPLLPGTPFILFI 395 (483)
T ss_dssp TTTC-----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTCCCCEECSEEEEEEEE---CSCSSCBCTTCEEEEEE
T ss_pred cCccccccccccccEECCCCEEEEEEEecccccCCceEEEEcCCCCCCceeeEEEEEEEE---ECCCCCCCCCCEEEEEe
Confidence 94 89999999999999999999999999999999987 88999999999999 544 7899999999999
Q ss_pred eeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEE---CceEEeeeccCccccceEEEEeCCcEEEEEEEEE
Q 016750 299 HAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTE 375 (383)
Q Consensus 299 ~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~---~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~ 375 (383)
|+.+++|+|..|.+++|.+|++. +++|++|++||.+.|+|++ .+|+|+|+|++++.+|||+||++|+|||+|+|+.
T Consensus 396 ~t~~~~~~v~~i~~~~d~~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~ 474 (483)
T 3p26_A 396 GVKEQPARIKRLISFIDKGNTAS-KKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISE 474 (483)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEC-CSCCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEE
T ss_pred CceEEEEEEEEEEEEEcCCCccc-ccCccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEE
Confidence 99999999999999999999876 6789999999999999999 8899999999999999999999999999999998
Q ss_pred cCC
Q 016750 376 LPT 378 (383)
Q Consensus 376 ~~~ 378 (383)
+..
T Consensus 475 ~~~ 477 (483)
T 3p26_A 475 ITQ 477 (483)
T ss_dssp ECC
T ss_pred ecc
Confidence 764
No 5
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=3.3e-68 Score=522.12 Aligned_cols=373 Identities=37% Similarity=0.716 Sum_probs=332.7
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|+|++|..++|++||+|++.....++++++.++|||||||++|.+++..+++.+|++|+|+|++++.++..++...|+++
T Consensus 55 ~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~ 134 (435)
T 1jny_A 55 FAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE 134 (435)
T ss_dssp HHHHHHHHHHC-----------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH
T ss_pred hhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999866544444579999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+..+..++++++|+++||+|+...+|++++++.+.+++..+++.+++.+ .+++++|+||++|+|+.++.+. ++||.
T Consensus 135 ~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~i~iSA~~g~~v~e~~~~--~~~~~ 211 (435)
T 1jny_A 135 HIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNT-NKVRFVPVVAPSGDNITHKSEN--MKWYN 211 (435)
T ss_dssp HHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCC-TTCEEEECBTTTTBTTTBCCSS--CTTCC
T ss_pred HHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCc-CCceEEEeecccCccccccccc--ccccc
Confidence 99999999987789999999995444777888899999999999988752 2468999999999999998764 69999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
|+.|++.|+.+++|.+..++|++++|+++|+ +.|++++|+|.+|+|++||.|.+.|.+...+|++|+++++++++|.|
T Consensus 212 g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~a 291 (435)
T 1jny_A 212 GPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEP 291 (435)
T ss_dssp SCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECT
T ss_pred chhHHHHHhccCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcC
Confidence 9999999999888877778999999999995 78999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecC
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLK 317 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~ 317 (383)
||+|+++|+|++..++++|++|++++.++..+..|.|++.| +++ .++..|+++.+|+|+.+++|+|..|.+++|.+
T Consensus 292 G~~v~~~l~g~~~~~i~~Gd~l~~~~~~~~~~~~f~a~v~~---l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~ 368 (435)
T 1jny_A 292 GDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIV---VWHPTALANGYTPVLHVHTASVACRVSELVSKLDPR 368 (435)
T ss_dssp TCEEEEEEESSCGGGCCTTCEEECTTSCCCEESEEEEEEEE---CCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTT
T ss_pred CCEEEEEEecCCHHHcCCccEecCCCCCceEeEEEEEEEEE---ECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccC
Confidence 99999999999999999999999998788999999999999 554 78999999999999999999999999999999
Q ss_pred CCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 016750 318 TKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 379 (383)
Q Consensus 318 ~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~ 379 (383)
|++..+++|++|++||.+.|+|++.+|+|+++|.+++.+|||+|||.|+|+|+|+|+++.+.
T Consensus 369 ~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 369 TGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp TCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred cccccccCccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEEECCeEEEEEEEeeecCc
Confidence 99888888999999999999999999999999999999999999999999999999998764
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-67 Score=532.18 Aligned_cols=370 Identities=33% Similarity=0.580 Sum_probs=341.0
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|+|++|.+++|+++|+|++..+..+++++++++|||||||++|.+++..+++.+|++|+|||++.|.++.+++...|+++
T Consensus 216 ~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e 295 (611)
T 3izq_1 216 FAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE 295 (611)
T ss_dssp SSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH
T ss_pred eeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999888777776789999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCC-CCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS-LCPWW 159 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~-~~~w~ 159 (383)
|+..+..++++++|+|+||+|+ .++++.+++++.+++..+++.+++.. ..++++|+||++|.|+.++.... .++||
T Consensus 296 ~l~~~~~lgi~~iIVVvNKiDl--~~~~~~~~~ei~~~l~~~l~~~g~~~-~~~~~i~vSA~tG~gI~el~~~~~~~~Wy 372 (611)
T 3izq_1 296 HMLLASSLGIHNLIIAMNKMDN--VDWSQQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWY 372 (611)
T ss_dssp HHHHHHTTTCCEEEEEEECTTT--TTTCHHHHHHHHHHHHHHHHHHTCCG-GGCEEEECCTTTCTTTSSCTTSCTTCCSC
T ss_pred HHHHHHHcCCCeEEEEEecccc--cchhHHHHHHHHHHHHHHHHhhcccc-cCccEEeeecccCCCccccCccccccccc
Confidence 9999999999889999999999 66778889999999999999888752 24689999999999999986532 38999
Q ss_pred CcccHHHHhhcc--CC----CCCCCCCCeeEEEEEEEc-----cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEE
Q 016750 160 NGPCLFEALDRI--EI----TPRDPNGPFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC 228 (383)
Q Consensus 160 ~g~~L~~~l~~~--~~----~~~~~~~p~~~~I~~~~~-----~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~ 228 (383)
.|++|++.|+.+ .. |....+.|++++|+++|+ +.|+|++|+|.+|+|++||.|.++|.+..++|++|++
T Consensus 373 ~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~ 452 (611)
T 3izq_1 373 NGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV 452 (611)
T ss_dssp CSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEEC
T ss_pred cCCcHHHHHHHHhhcccccCcccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEE
Confidence 999999999887 22 345678999999999995 4789999999999999999999999999999999999
Q ss_pred CC--------ccceecCCCCeEEEEEecCCccCceeeEEEecCCC-CcccccEEEEEEEEeccccc-ccccCCcEEEEEE
Q 016750 229 DD--------NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHI 298 (383)
Q Consensus 229 ~~--------~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~ 298 (383)
++ .++++|.|||+|+|+|++++..++++|++|++++. ++..+..|+|++.| +.+ .++..|+++.+|+
T Consensus 453 ~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~---l~~~~~l~~g~~~~l~~ 529 (611)
T 3izq_1 453 GSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTT---FDMNRPLLPGTPFILFI 529 (611)
T ss_dssp SSCCSCSSSCCCCCCEETTCEEEEEESSCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEE---CSCSSCBCTTEEEEEES
T ss_pred cccccccccccccceecCCCcceEEeeeccHhhCcceEEccCCCCCCCceeeEEEEEEEE---ECCCCCCCCCCEEEEEE
Confidence 94 89999999999999999999999999999999987 88999999999999 554 7899999999999
Q ss_pred eeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEE---CceEEeeeccCccccceEEEEeCCcEEEEEEEEE
Q 016750 299 HAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTE 375 (383)
Q Consensus 299 ~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~---~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~ 375 (383)
|+.+++|+|..|.+++|.+|++. +++|++|++|+.+.|+|++ .+|+|+++|++++.+|||+||+.|+|||+|+|++
T Consensus 530 ~t~~~~~~v~~l~~~~d~~t~~~-~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~ 608 (611)
T 3izq_1 530 GVKEQPARIKRLISFIDKGNTAS-KKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISE 608 (611)
T ss_dssp SSCEEEEEEEEEEESSSSCCCBC-TTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEE
T ss_pred CCeEeeEEeeeeeeeeccccccc-ccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEE
Confidence 99999999999999999999887 6789999999999999999 7899999999999999999999999999999998
Q ss_pred cC
Q 016750 376 LP 377 (383)
Q Consensus 376 ~~ 377 (383)
+.
T Consensus 609 v~ 610 (611)
T 3izq_1 609 IT 610 (611)
T ss_dssp EC
T ss_pred ec
Confidence 85
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-66 Score=522.11 Aligned_cols=362 Identities=33% Similarity=0.591 Sum_probs=295.3
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|+|++|.+++|++||+|++..+..+.++++.++|||||||++|.++|..+++.+|++|||||++.|.++.+|+...|+++
T Consensus 226 ~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e 305 (592)
T 3mca_A 226 YAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE 305 (592)
T ss_dssp ---------------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH
T ss_pred hhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999988888844589999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHH-HhcCCCCCCCceEEEccccccccccccccCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWW 159 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~ 159 (383)
|+.++..+++|++|+|+||||+ .+|++.+++.+.+++..++ +.+++.. .+++++|+||++|.|+.++.....++||
T Consensus 306 ~l~~~~~lgip~iIvviNKiDl--~~~~~~~~~~i~~el~~~l~~~~g~~~-~~~~ii~iSA~~G~gI~e~~~~~~~~w~ 382 (592)
T 3mca_A 306 HAYLLRALGISEIVVSVNKLDL--MSWSEDRFQEIKNIVSDFLIKMVGFKT-SNVHFVPISAISGTNLIQKDSSDLYKWY 382 (592)
T ss_dssp HHHHHHHSSCCCEEEEEECGGG--GTTCHHHHHHHHHHHHHHHTTTSCCCG-GGEEEEEECSSSCSSSCSCCCCGGGGTC
T ss_pred HHHHHHHcCCCeEEEEEecccc--ccccHHHHHHHHHHHHHHHHHhhCCCc-cceEEEEEecccCccccccccccccccc
Confidence 9999999999889999999999 6677888999999999999 8888752 2568999999999999987665568999
Q ss_pred CcccHHHHhhccCCCCCCCCCCeeEEEEEEEc-cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccce-ecC
Q 016750 160 NGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVR-HAG 237 (383)
Q Consensus 160 ~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~-~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~-~a~ 237 (383)
.|++|++.|..+.++....+.|++++|+++|+ +.|++++|+|.+|+|++||.|.++|.+...+|++|++++.+++ +|.
T Consensus 383 ~g~~Lle~l~~~~pp~~~~~~p~r~~v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~ 462 (592)
T 3mca_A 383 KGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAV 462 (592)
T ss_dssp CSCCHHHHHHTSCCCSCTTTSCCEEEEEEEEEETTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEE
T ss_pred chHHHHHHHHhhccccccccccchheeeEEEecCCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceec
Confidence 99999999999877778889999999999986 5788999999999999999999999999999999999999999 999
Q ss_pred CCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeec
Q 016750 238 PGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDL 316 (383)
Q Consensus 238 aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~ 316 (383)
||++|+++|+|++..++++|++|+.++.++..+..|+|++.| +.+ .++..|+++.+|+|+.+++|+| .|...
T Consensus 463 aG~~v~~~l~~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~---~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~--- 535 (592)
T 3mca_A 463 AGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQT---FDIHGPILSGSTLVLHLGRTVTSVSL-KIVTV--- 535 (592)
T ss_dssp TTCEEEEEESSSCGGGCCTTCEEECSSSCCEEESEEEEEEEE---CSCSSCEETTEEEEEECSSCEEEEEE-EEEES---
T ss_pred CCCEEEEEEccccccccceEEEeccCCCCccccCeEEEEEEE---ECCCccCCCCCEEEEEEcCcEEEEEE-EEEec---
Confidence 999999999999999999999999998888889999999999 555 6899999999999999999999 77641
Q ss_pred CCCcccccccccccCCCEEEEEEE-ECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 016750 317 KTKKPMKKKVLFVKNGAIVVCRIQ-VNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 377 (383)
Q Consensus 317 ~~~~~~~~~~~~l~~g~~~~v~~~-~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~ 377 (383)
.+++|++|++|+.+.|+|+ +.+|+|+|+|++++.+|||+||+.|+|||+|+|+++.
T Consensus 536 -----~~~~~~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 536 -----NNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp -----SSSCCSEECSSCEEEEEEEESSSCEEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred -----cccchhccCCCCEEEEEEEECCCcEEEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 2456889999999999999 9999999999999999999999999999999999874
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1e-63 Score=490.29 Aligned_cols=356 Identities=25% Similarity=0.441 Sum_probs=320.9
Q ss_pred CceecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 1 MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 1 ~a~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
|+|++|..++||+||+|++..+..+.+++..++|||||||++|.+++..+++.+|++|||+|++++.+ .|+++
T Consensus 75 ~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-------~qt~~ 147 (434)
T 1zun_B 75 LALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-------TQTRR 147 (434)
T ss_dssp CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-------HHHHH
T ss_pred hhhhhccChhHHHCCcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999874 69999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCC
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 160 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~ 160 (383)
|+..+..++++++|+++||+|+ .++++++++++.+++..+++.+++. ..+.+++++||++|.|+.++.+ .++||.
T Consensus 148 ~l~~~~~~~~~~iIvviNK~Dl--~~~~~~~~~~i~~~~~~~~~~~g~~-~~~~~~i~vSA~~g~gi~~~~~--~~~w~~ 222 (434)
T 1zun_B 148 HSYIASLLGIKHIVVAINKMDL--NGFDERVFESIKADYLKFAEGIAFK-PTTMAFVPMSALKGDNVVNKSE--RSPWYA 222 (434)
T ss_dssp HHHHHHHTTCCEEEEEEECTTT--TTSCHHHHHHHHHHHHHHHHTTTCC-CSEEEEEECCTTTCTTTSSCCT--TCTTCC
T ss_pred HHHHHHHcCCCeEEEEEEcCcC--CcccHHHHHHHHHHHHHHHHHhCCC-ccCceEEEEeccCCCCcccccc--cCcccc
Confidence 9999999998779999999999 6556677888888899999888732 1157899999999999999876 489999
Q ss_pred cccHHHHhhccCCCCCCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCC
Q 016750 161 GPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP 238 (383)
Q Consensus 161 g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~a 238 (383)
|++|.+.|+.++++....+.|++++|+++++ ..|+.+.|+|.+|+|++||.|.++|++...+|++|++++.++++|.|
T Consensus 223 g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~a 302 (434)
T 1zun_B 223 GQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGP 302 (434)
T ss_dssp SCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECT
T ss_pred CchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecC
Confidence 9999999999988888888999999999984 46788999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEEEEeecCC
Q 016750 239 GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKT 318 (383)
Q Consensus 239 G~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~ 318 (383)
||+|+++++ +..++++|++|+.++.+|..++.|+|++.| ++..++..|+++.+|+|+..++|+|..+.+++|.+|
T Consensus 303 G~~v~~~l~--~~~~i~~G~~l~~~~~~~~~~~~f~a~~~~---l~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~ 377 (434)
T 1zun_B 303 GQAVTLTME--DEIDISRGDLLVHADNVPQVSDAFDAMLVW---MAEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNT 377 (434)
T ss_dssp TCEEEEEES--SCCCCCTTCEEEETTSCCCEEEEEEEEEEE---CCSSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTT
T ss_pred CCEEEEEeC--CccccCCccEEECCCCCCCcccEEEEEEEE---eccccCCCCCEEEEEEcCCEEEEEEEEEeeeecccc
Confidence 999999988 456799999999999888999999999999 555679999999999999999999999999999999
Q ss_pred CcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeC--CcEEEEEEEEE
Q 016750 319 KKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE--GKTVAVGKVTE 375 (383)
Q Consensus 319 ~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~--~~tvg~G~V~~ 375 (383)
++ ++++++|++||.+.|+|++.+|+|+++|.++|.+|||+|||. |+|||+|+|+.
T Consensus 378 ~~--~~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 378 LE--EGPASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp CC--CCCCSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred cc--ccCccEeCCCCEEEEEEEECCeEEEcccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 87 467899999999999999999999999999999999999976 89999999963
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=3.8e-57 Score=438.71 Aligned_cols=339 Identities=28% Similarity=0.446 Sum_probs=298.1
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
.+|..++|++||+|++..+..++++++.++|||||||++|.++|..+++.+|++|+|||++++.+ .|+++|+.
T Consensus 40 ~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~ 112 (397)
T 1d2e_A 40 EIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-------PQTREHLL 112 (397)
T ss_dssp HHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-------HHHHHHHH
T ss_pred hhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-------HHHHHHHH
Confidence 47889999999999999998888889999999999999999999999999999999999999874 69999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCc--
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-- 161 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g-- 161 (383)
.++.+++|++|+++||+|+ .+ +++.++.+.+++.++++.+++.. ..++++++||++|.|.. .++||.|
T Consensus 113 ~~~~~~vp~iivviNK~Dl--~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SA~~g~n~~------~~~~~~g~i 182 (397)
T 1d2e_A 113 LARQIGVEHVVVYVNKADA--VQ-DSEMVELVELEIRELLTEFGYKG-EETPIIVGSALCALEQR------DPELGLKSV 182 (397)
T ss_dssp HHHHTTCCCEEEEEECGGG--CS-CHHHHHHHHHHHHHHHHHTTSCT-TTSCEEECCHHHHHTTC------CTTTTHHHH
T ss_pred HHHHcCCCeEEEEEECccc--CC-CHHHHHHHHHHHHHHHHHcCCCc-ccCcEEEeehhhccccc------CCCccCCcH
Confidence 9999999977899999999 43 34566777888888998888742 24689999999998842 2689876
Q ss_pred ccHHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC--cEEEEEEEEECCccceec
Q 016750 162 PCLFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHA 236 (383)
Q Consensus 162 ~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a 236 (383)
..|++.|.. +++|.+..++|++++|+++| ++.|+|++|+|.+|+|++||.|.+.|.+ ..++|++|+++++++++|
T Consensus 183 ~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a 262 (397)
T 1d2e_A 183 QKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRA 262 (397)
T ss_dssp HHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEE
T ss_pred HHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEe
Confidence 567777765 77777888899999999998 4789999999999999999999999975 789999999999999999
Q ss_pred CCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEEE
Q 016750 237 GPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQ 313 (383)
Q Consensus 237 ~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~ 313 (383)
.|||+|+++|+|++..++++|++|++++ ++..+..|+|++.|++... +.++..|+++.+|+++..++|+|. +.
T Consensus 263 ~aG~~v~~~l~~i~~~~i~~G~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~-- 338 (397)
T 1d2e_A 263 EAGDNLGALVRGLKREDLRRGLVMAKPG-SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP-- 338 (397)
T ss_dssp ETTCEEEEEESSCCGGGCCTTCEEESTT-SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC--
T ss_pred cCCCceEEEecccchhccCceeEEeCCC-CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec--
Confidence 9999999999999999999999999987 5677999999999954311 247999999999999999999987 21
Q ss_pred eecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 016750 314 IDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 379 (383)
Q Consensus 314 ~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~ 379 (383)
.+++++++|+.+.|+|+|.+|+|++.+ +||+||+.++|+|+|+|+++.+.
T Consensus 339 ----------~~~~~l~~~~~~~v~~~~~~p~~~~~~------~r~~lr~~~~ti~~G~i~~~~~~ 388 (397)
T 1d2e_A 339 ----------PGKELAMPGEDLKLTLILRQPMILEKG------QRFTLRDGNRTIGTGLVTDTPAM 388 (397)
T ss_dssp ----------SSCCCBCTTCEEEEEEEEEEEECCCTT------CEEEEEETTEEEEEEEEEECCCC
T ss_pred ----------CCcccccCCCEEEEEEEECCeEEEccC------CeEEEEeCCeEEEEEEEeecccC
Confidence 135679999999999999999999986 79999999999999999998875
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=5.8e-56 Score=431.83 Aligned_cols=344 Identities=29% Similarity=0.475 Sum_probs=298.2
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
.+|.+++|+++|+|++.....+++++..++|||||||++|.+++..+++.+|++|+|+|++++.+ .|+++|+.
T Consensus 49 ~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l~ 121 (405)
T 2c78_A 49 DIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-------PQTREHIL 121 (405)
T ss_dssp HHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHHH
T ss_pred hccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHHH
Confidence 57999999999999999988899899999999999999999999999999999999999999874 69999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc---CCCCCCCC
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD---KSLCPWWN 160 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~---~~~~~w~~ 160 (383)
.+..+++|++|+++||+|+ .+ +++.++.+.+++..+++.+++.. .+.+++++||++|.|+.+... ....+||.
T Consensus 122 ~~~~~~ip~iivviNK~Dl--~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~ 197 (405)
T 2c78_A 122 LARQVGVPYIVVFMNKVDM--VD-DPELLDLVEMEVRDLLNQYEFPG-DEVPVIRGSALLALEQMHRNPKTRRGENEWVD 197 (405)
T ss_dssp HHHHTTCCCEEEEEECGGG--CC-CHHHHHHHHHHHHHHHHHTTSCT-TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHH
T ss_pred HHHHcCCCEEEEEEECccc--cC-cHHHHHHHHHHHHHHHHHhcccc-cCCCEEEccHHHhhhhhccccccccCCCcccc
Confidence 9999999988899999999 43 34566777788888898888641 246899999999998654321 01356876
Q ss_pred c-ccHHHHhhc-cCCCCCCCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCC---cEEEEEEEEECCccc
Q 016750 161 G-PCLFEALDR-IEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRV 233 (383)
Q Consensus 161 g-~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~---~~~~V~sI~~~~~~v 233 (383)
+ ..|++.|.. +++|.+..++|++++|+++|+ +.|++++|+|.+|+|++||.|.+.|.+ ...+|++|+++++++
T Consensus 198 ~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~ 277 (405)
T 2c78_A 198 KIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTL 277 (405)
T ss_dssp HHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEE
T ss_pred cHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCccc
Confidence 5 457776655 777777889999999999984 789999999999999999999999987 589999999999999
Q ss_pred eecCCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEE
Q 016750 234 RHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVEL 310 (383)
Q Consensus 234 ~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i 310 (383)
++|.|||+|+++|+|++..++++|++|++++ ++..++.|+|++.|++.-. +.++..|+++.+|+++.+++|+|. +
T Consensus 278 ~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~ 355 (405)
T 2c78_A 278 QEGIAGDNVGVLLRGVSREEVERGQVLAKPG-SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-L 355 (405)
T ss_dssp SEEETTCEEEEEESSCCTTTCCTTCEEESTT-SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-C
T ss_pred CEEcCCCEEEEEECCCcHhhcCceEEEEcCC-CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-E
Confidence 9999999999999999999999999999987 5778999999999954321 247999999999999999999987 2
Q ss_pred EEEeecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 016750 311 LHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 378 (383)
Q Consensus 311 ~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~ 378 (383)
. .+++++++||.+.|+|++.+|+|++.| +||+||++|+|+|+|+|+++.+
T Consensus 356 ~------------~~~~~l~~~~~~~v~~~~~~p~~~~~~------~rf~lr~~~~ti~~G~i~~~~~ 405 (405)
T 2c78_A 356 P------------PGVEMVMPGDNVTFTVELIKPVALEEG------LRFAIREGGRTVGAGVVTKILE 405 (405)
T ss_dssp C------------TTCCCBCTTCEEEEEEEEEEEEEECTT------CEEEEEETTEEEEEEEEEEECC
T ss_pred c------------cCccccCCCCEEEEEEEECceEEEccC------CEEEEEcCCeEEEEEEEEeccC
Confidence 1 135679999999999999999999987 7999999999999999998753
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=6.1e-53 Score=440.53 Aligned_cols=340 Identities=29% Similarity=0.446 Sum_probs=282.4
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
.+|.+++|+++|+|++.....+++++..++|||||||++|.++|..+++.+|++|||||++++.+ .|+++|+.
T Consensus 333 ~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~ 405 (1289)
T 3avx_A 333 QIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHIL 405 (1289)
T ss_dssp ---------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHH
T ss_pred ccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999875 79999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCc-c
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-P 162 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g-~ 162 (383)
.+..+++|++|+++||+|+ .+ ++++++.+.+++..+++.+++. ..+++++++||++|.+- ..+||.| .
T Consensus 406 ll~~lgIP~IIVVINKiDL--v~-d~e~le~i~eEi~elLk~~G~~-~~~vp~IpvSAktG~ng-------~~~w~eGI~ 474 (1289)
T 3avx_A 406 LGRQVGVPYIIVFLNKCDM--VD-DEELLELVEMEVRELLSQYDFP-GDDTPIVRGSALKALEG-------DAEWEAKIL 474 (1289)
T ss_dssp HHHHHTCSCEEEEEECCTT--CC-CHHHHHHHHHHHHHHHHHTTSC-TTTCCEEECCSTTTTTC-------CHHHHHHHH
T ss_pred HHHHcCCCeEEEEEeeccc--cc-chhhHHHHHHHHHHHHHhcccc-ccceeEEEEEeccCCCC-------Cccccccch
Confidence 9999999988899999999 43 3456777888888999888874 22578999999999541 1356655 3
Q ss_pred cHHHHhhc-cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCC--cEEEEEEEEECCccceecC
Q 016750 163 CLFEALDR-IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAG 237 (383)
Q Consensus 163 ~L~~~l~~-~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~ 237 (383)
.|++.|.. +++|.+..++|++++|+++| ++.|+|++|+|.+|+|++||.|.+.|.+ ..++|++|+++++++++|.
T Consensus 475 eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~ 554 (1289)
T 3avx_A 475 ELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGR 554 (1289)
T ss_dssp HHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEE
T ss_pred hhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEe
Confidence 46666655 67777777899999999998 4799999999999999999999999988 7899999999999999999
Q ss_pred CCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccc---cccccCCcEEEEEEeeeEEEEEEEEEEEEe
Q 016750 238 PGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQI 314 (383)
Q Consensus 238 aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~ 314 (383)
|||+|+++|+|++..++++|++|+.++. +.++..|+|++.|++.-. +.++..|+.+.+|+++..++|+|. +
T Consensus 555 AGd~Vgl~L~GI~~~dI~RGdVL~~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L---- 628 (1289)
T 3avx_A 555 AGENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-L---- 628 (1289)
T ss_dssp TTCEEEEEESSCCGGGCCTTCEEESTTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-C----
T ss_pred cCCcceeEeeecchhcCCcccEEecCCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-E----
Confidence 9999999999999999999999999874 577899999999954311 247899999999999999999986 2
Q ss_pred ecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCCC
Q 016750 315 DLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 381 (383)
Q Consensus 315 d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~~~ 381 (383)
.++++.|++||.+.|+|+|.+|+|++++ +||+||+.++|+|+|+|+++.++.+
T Consensus 629 --------~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g------~RFiLRd~grTIG~G~V~~v~~~~~ 681 (1289)
T 3avx_A 629 --------PEGVEMVMPGDNIKMVVTLIHPIAMDDG------LRFAIREGGRTVGAGVVAKVLSGAS 681 (1289)
T ss_dssp --------CTTCCCBCTTCCCEEEEEEEEEEECCTT------CEEEEEETTEEEEEEEEEEECCCCC
T ss_pred --------CCCcccccCCCEEEEEEEECceEEEccC------CEEEEEeCCeEEEEEEEeeechhhh
Confidence 1235679999999999999999999986 7999999999999999999987753
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1.3e-54 Score=429.67 Aligned_cols=336 Identities=23% Similarity=0.382 Sum_probs=278.6
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+++|..++|++||+|++..+..+++++..++|||||||++|.+++..+++.+|++|||||+++|.. +|+++|+
T Consensus 46 ~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l 118 (482)
T 1wb1_A 46 SAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-------TQTGEHM 118 (482)
T ss_dssp ------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-------HHHHHHH
T ss_pred cccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-------HHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999874 7999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc-CCCCCCCceEEEccccccccccccccCCCCCCCCc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 161 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g 161 (383)
..++.+++| .|+++||+|+ .+ +++++.+.+++.++++.. ++. ..+++++||++|+|++++
T Consensus 119 ~~~~~~~ip-~IvviNK~Dl--~~--~~~~~~~~~~l~~~l~~~~~~~---~~~ii~vSA~~g~gI~~L----------- 179 (482)
T 1wb1_A 119 LILDHFNIP-IIVVITKSDN--AG--TEEIKRTEMIMKSILQSTHNLK---NSSIIPISAKTGFGVDEL----------- 179 (482)
T ss_dssp HHHHHTTCC-BCEEEECTTS--SC--HHHHHHHHHHHHHHHHHSSSGG---GCCEEECCTTTCTTHHHH-----------
T ss_pred HHHHHcCCC-EEEEEECCCc--cc--chhHHHHHHHHHHHHhhhcccc---cceEEEEECcCCCCHHHH-----------
Confidence 999999999 5899999999 43 466778888888888877 654 568999999999999984
Q ss_pred ccHHHHhhc---cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceec
Q 016750 162 PCLFEALDR---IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHA 236 (383)
Q Consensus 162 ~~L~~~l~~---~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a 236 (383)
++.|.. ++...+..++|++++|+++| ++.|+|++|+|.+|+|++||.+.+.|.+...+|++|+++++++++|
T Consensus 180 ---~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a 256 (482)
T 1wb1_A 180 ---KNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEA 256 (482)
T ss_dssp ---HHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCC
T ss_pred ---HHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEe
Confidence 443333 33225667789999999998 5799999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCccCceeeEEE-ecCCCCcccccEEEEEEEEecccccccccCCcEEEEEEeeeEEEEEEEEEE-EEe
Q 016750 237 GPGENLRIRLSGIEEEDILSGFVL-SSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELL-HQI 314 (383)
Q Consensus 237 ~aG~~v~l~l~g~~~~~i~~G~vl-~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~-~~~ 314 (383)
.|||+|+++++|++..++++|++| +.+ .++..++.|+|++.|++. ...++..|+++.+|+++.+++|+|..+. +++
T Consensus 257 ~~G~~v~~~l~~~~~~~i~~Gdvl~~~~-~~~~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~ 334 (482)
T 1wb1_A 257 KAGDRVGMAIQGVDAKQIYRGXILTSKD-TKLQTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTF 334 (482)
T ss_dssp CSSCCCCEECSSCCSSCCCSSCBCCCTT-CCCCCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEEEEEEECCS
T ss_pred cCCCEEEEEecCCCHhhccccceEecCC-CCCceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEEEEEecccc
Confidence 999999999999988899999999 554 567888999999999432 1267999999999999999999999998 788
Q ss_pred ecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEe---C---CcEEEEEEEEEcCC
Q 016750 315 DLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT---E---GKTVAVGKVTELPT 378 (383)
Q Consensus 315 d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~---~---~~tvg~G~V~~~~~ 378 (383)
|.+++.. .+++|++||.+.|+|+|++|+|++++ +||+||+ + ++|+|+|+|+++.+
T Consensus 335 d~~~~~~---~~~~l~~g~~~~v~l~~~~pv~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 335 GKTEENI---ILNEVISGNEXYXAFELEEKVLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp SSCCCEE---ECCSSCCSSCCCEEEEEEEEECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred ccccccc---cchhhcCCCEEEEEEEcCccEEecCC------CeEEEEECCCCccCceEeeEEEEEeccc
Confidence 8877532 25689999999999999999999875 7999999 4 89999999998844
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=7.4e-51 Score=389.58 Aligned_cols=315 Identities=20% Similarity=0.273 Sum_probs=267.0
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCe
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 92 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (383)
+||+|++..+..+++++++++|||||||++|.+++..+++.+|++|+||| +.+++ +|+++|+..+..+++|.
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~-------~qt~e~~~~~~~~~i~~ 114 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD-------AHTGECIIALDLLGFKH 114 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC-------HHHHHHHHHHHHTTCCE
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc-------HHHHHHHHHHHHcCCCe
Confidence 78999999999999999999999999999999999999999999999999 88874 69999999999999996
Q ss_pred EEEEEe-cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEE--ccccc---cccccccccCCCCCCCCcccHHH
Q 016750 93 LLLVVN-KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLP--ISGLM---GLNMKTRVDKSLCPWWNGPCLFE 166 (383)
Q Consensus 93 ~ivviN-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--iSa~~---g~~i~~~~~~~~~~w~~g~~L~~ 166 (383)
+|+++| |||+ . +...+++.+++.++++..++. .+++++ +||++ |.|++++.+ .|.+
T Consensus 115 ~ivvvNNK~Dl-~----~~~~~~~~~~i~~~l~~~~~~---~~~ii~~~~SA~~~~~g~gi~~L~~----------~l~~ 176 (370)
T 2elf_A 115 GIIALTRSDST-H----MHAIDELKAKLKVITSGTVLQ---DWECISLNTNKSAKNPFEGVDELKA----------RINE 176 (370)
T ss_dssp EEEEECCGGGS-C----HHHHHHHHHHHHHHTTTSTTT---TCEEEECCCCTTSSSTTTTHHHHHH----------HHHH
T ss_pred EEEEEEeccCC-C----HHHHHHHHHHHHHHHHhcCCC---ceEEEecccccccCcCCCCHHHHHH----------HHHh
Confidence 589999 9998 3 344566677888888776653 579999 99999 999988543 1333
Q ss_pred HhhccCCCCCC-CCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeEE
Q 016750 167 ALDRIEITPRD-PNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLR 243 (383)
Q Consensus 167 ~l~~~~~~~~~-~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~ 243 (383)
.++...++... ...|++++++++|+ +.|++++|+|++|+|++||+|.+.|.+...+|++|+++++++++|.|||+|+
T Consensus 177 ~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~ 256 (370)
T 2elf_A 177 VAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVG 256 (370)
T ss_dssp HHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEE
T ss_pred hccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcce
Confidence 33332111112 34568999999995 7899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccCceeeEEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCccc
Q 016750 244 IRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPM 322 (383)
Q Consensus 244 l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~ 322 (383)
++|+|++..++++|++|+. .+ ..+++|+|++.| +++ .++..|+++.+|+++.+++|+|..+.. |.+ ++
T Consensus 257 i~l~gv~~~~i~~Gdvl~~--~~-~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~-- 325 (370)
T 2elf_A 257 MRLKNVQAKDIERGFIISD--KE-IVTTDYTLECTV---SKFTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV-- 325 (370)
T ss_dssp EEEESCCGGGCCTTCEEES--CC-EEEEEEEEEEEE---CTTSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE--
T ss_pred EEEeccCHHHcCCceEEEC--CC-ceeEEEEEEEEE---ECCCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc--
Confidence 9999999999999999998 45 889999999999 555 789999999999999999999998753 322 11
Q ss_pred ccccccccCCCEEEEEEEECceEEeeeccCccccceEEEEeCC---cEEEEEEEE
Q 016750 323 KKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEG---KTVAVGKVT 374 (383)
Q Consensus 323 ~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~---~tvg~G~V~ 374 (383)
+.+.+||.+.|+|++.+|+|+++|. ||+||+.+ +|+|+|.|.
T Consensus 326 ----~~~~~g~~~~v~l~~~~pi~~~~~~------rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 326 ----EEAKPGSTCVLELSGNKKLAYSKQD------RFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp ----SCBCTTCEEEEEEEEEEEEEECTTS------CEEEECTTSSSCEEEEEEEC
T ss_pred ----eeecCCCEEEEEEEECcEEEEeCCC------EEEEEECCCCCEEEEEEEeC
Confidence 2356899999999999999999984 99999975 799999873
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1.2e-48 Score=380.99 Aligned_cols=315 Identities=24% Similarity=0.395 Sum_probs=263.3
Q ss_pred cCCCHHHHhhcceeeccceeeeec-----------------------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEE
Q 016750 5 MDTNEEERIKGKTVEVGRAHFETE-----------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVI 61 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~~-----------------------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvv 61 (383)
+|..++|++||+|++..+..+.+. ...++|||||||++|.+++.+++..+|++||||
T Consensus 35 ~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVv 114 (410)
T 1kk1_A 35 TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVI 114 (410)
T ss_dssp CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEE
T ss_pred cccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEE
Confidence 678899999999999987765541 268999999999999999999999999999999
Q ss_pred ECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccc
Q 016750 62 SARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 141 (383)
Q Consensus 62 da~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 141 (383)
|++++.. .+|+++|+..+..++++++|+++||+|+ .+ ..+..+..+++.++++..... .++++++||
T Consensus 115 da~~g~~------~~qt~e~l~~~~~~~~~~iivviNK~Dl--~~--~~~~~~~~~~i~~~l~~~~~~---~~~~i~vSA 181 (410)
T 1kk1_A 115 AANEPCP------RPQTREHLMALQIIGQKNIIIAQNKIEL--VD--KEKALENYRQIKEFIEGTVAE---NAPIIPISA 181 (410)
T ss_dssp ETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGG--SC--HHHHHHHHHHHHHHHTTSTTT---TCCEEECBT
T ss_pred ECCCCCC------ChhHHHHHHHHHHcCCCcEEEEEECccC--CC--HHHHHHHHHHHHHHHHhcCcC---CCeEEEeeC
Confidence 9998751 2699999999999998779999999999 43 223334455666666654322 568999999
Q ss_pred cccccccccccCCCCCCCCcccHHHHhhc-cCCCCCCCCCCeeEEEEEEEc----------cCCeEEEEEEEEeEEecCC
Q 016750 142 LMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGD 210 (383)
Q Consensus 142 ~~g~~i~~~~~~~~~~w~~g~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~~----------~~G~vv~G~V~sG~l~~gd 210 (383)
++|.|+.+ |++.|.. ++.|.+..+.|++++|+++|. ..|++++|+|.+|+|++||
T Consensus 182 ~~g~gi~~--------------L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd 247 (410)
T 1kk1_A 182 LHGANIDV--------------LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGD 247 (410)
T ss_dssp TTTBSHHH--------------HHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTC
T ss_pred CCCCCHHH--------------HHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCC
Confidence 99999987 5666654 777777778999999999883 2688999999999999999
Q ss_pred EEEEecCCc------------EEEEEEEEECCccceecCCCCeEEEEEe---cCCccCceeeEEEecCCCCcccccEEEE
Q 016750 211 SLLVMPNKA------------QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIA 275 (383)
Q Consensus 211 ~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---g~~~~~i~~G~vl~~~~~~~~~~~~f~a 275 (383)
.|.++|++. ..+|++|+.+++++++|.|||+|+++++ ++...++.+|++|++++.+++.++.|+|
T Consensus 248 ~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a 327 (410)
T 1kk1_A 248 EIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRL 327 (410)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEE
T ss_pred EEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEE
Confidence 999999752 6799999999999999999999999986 5677889999999999888888899999
Q ss_pred EEEEecccc-------cccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEee
Q 016750 276 QLQILELLD-------NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 348 (383)
Q Consensus 276 ~i~~~~~~~-------~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~ 348 (383)
++.|++... ..++..|+++.+|+++.+++|+|..+. ++ .++++|.+|+|++
T Consensus 328 ~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~--------------------~~--~~~l~~~~p~~~~ 385 (410)
T 1kk1_A 328 EVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLG--------------------KD--EIEVKLQIPVCAE 385 (410)
T ss_dssp EEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECC
T ss_pred EEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEec--------------------CC--EEEEEeCCcEEec
Confidence 999954320 267999999999999999999998753 12 6788899999999
Q ss_pred eccCccccceEEEEe----CCcEEEEEEEE
Q 016750 349 KFADFAQLGRFTLRT----EGKTVAVGKVT 374 (383)
Q Consensus 349 ~~~~~~~lgr~ilr~----~~~tvg~G~V~ 374 (383)
.+ .||+||+ .++|+|+|.|+
T Consensus 386 ~~------~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 386 PG------DRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp TT------CEEEEEEEETTEEEEEEEEEEE
T ss_pred CC------CEEEEEEecCCCcEEEEEEEEc
Confidence 87 5999999 68999999997
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=8.9e-49 Score=381.44 Aligned_cols=315 Identities=25% Similarity=0.388 Sum_probs=250.3
Q ss_pred cCCCHHHHhhcceeeccceeeee---------------c--------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEE
Q 016750 5 MDTNEEERIKGKTVEVGRAHFET---------------E--------TTRFTILDAPGHKSYVPNMISGASQADIGVLVI 61 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~~---------------~--------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvv 61 (383)
+|..++|++||+|++..+..+.. + ...++|||||||++|.+++.+++..+|++|||+
T Consensus 33 ~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVv 112 (408)
T 1s0u_A 33 TDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVI 112 (408)
T ss_dssp CCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEE
T ss_pred cccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEE
Confidence 67889999999999988765433 1 268999999999999999999999999999999
Q ss_pred ECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccc
Q 016750 62 SARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 141 (383)
Q Consensus 62 da~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 141 (383)
|++++.. .+|+++|+..+..++++++|+++||+|+...++.+ +..+++.++++..... .++++++||
T Consensus 113 da~~g~~------~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~----~~~~~i~~~l~~~~~~---~~~~i~vSA 179 (408)
T 1s0u_A 113 AANEPCP------QPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAE----ENYEQIKEFVKGTIAE---NAPIIPISA 179 (408)
T ss_dssp ETTSCSS------CHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTT----THHHHHHHHHTTSTTT---TCCEEEC--
T ss_pred ECCCCCC------CchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHH----HHHHHHHHHHhhcCCC---CCeEEEeeC
Confidence 9998752 26999999999989986699999999994332212 2333455555543322 568999999
Q ss_pred cccccccccccCCCCCCCCcccHHHHhhc-cCCCCCCCCCCeeEEEEEEEc----------cCCeEEEEEEEEeEEecCC
Q 016750 142 LMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGD 210 (383)
Q Consensus 142 ~~g~~i~~~~~~~~~~w~~g~~L~~~l~~-~~~~~~~~~~p~~~~I~~~~~----------~~G~vv~G~V~sG~l~~gd 210 (383)
++|+|+++ |++.|.. ++.+.+..+.|++++|+++|+ .+|+|++|+|.+|+|++||
T Consensus 180 ~~g~gi~~--------------L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd 245 (408)
T 1s0u_A 180 HHEANIDV--------------LLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGD 245 (408)
T ss_dssp ----CHHH--------------HHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTC
T ss_pred CCCCCHHH--------------HHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCC
Confidence 99999988 5666654 777777888999999999983 2688999999999999999
Q ss_pred EEEEecCCc------------EEEEEEEEECCccceecCCCCeEEEEEe---cCCccCceeeEEEecCCCCcccccEEEE
Q 016750 211 SLLVMPNKA------------QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIA 275 (383)
Q Consensus 211 ~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---g~~~~~i~~G~vl~~~~~~~~~~~~f~a 275 (383)
.|.++|++. ..+|++|+++++++++|.|||+|+++++ +++..++++|++|+.++.+++.++.|+|
T Consensus 246 ~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a 325 (408)
T 1s0u_A 246 EIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITI 325 (408)
T ss_dssp EEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEE
T ss_pred EEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEE
Confidence 999999642 6899999999999999999999999887 6888899999999999888888899999
Q ss_pred EEEEecccc-------cccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEee
Q 016750 276 QLQILELLD-------NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 348 (383)
Q Consensus 276 ~i~~~~~~~-------~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~ 348 (383)
++.|++... ..++..|+++.+|+++.++.|+|..+. ++ .++++|.+|+|++
T Consensus 326 ~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~--------------------~~--~~~~~~~~p~~~~ 383 (408)
T 1s0u_A 326 RANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSAR--------------------GD--IADIKLKLPICAE 383 (408)
T ss_dssp EEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECC
T ss_pred EEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEec--------------------CC--EEEEEECCcEEec
Confidence 999954320 267999999999999999999998753 12 6788899999999
Q ss_pred eccCccccceEEEEe----CCcEEEEEEEE
Q 016750 349 KFADFAQLGRFTLRT----EGKTVAVGKVT 374 (383)
Q Consensus 349 ~~~~~~~lgr~ilr~----~~~tvg~G~V~ 374 (383)
.+ .||+||+ .++|+|+|.|+
T Consensus 384 ~~------~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 384 IG------DRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp TT------CEEEEEEECSSSEEEEEEEEEC
T ss_pred CC------CEEEEEEecCCCeEEEEEEEEc
Confidence 87 5999999 58999999986
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=3e-45 Score=356.03 Aligned_cols=309 Identities=23% Similarity=0.321 Sum_probs=255.9
Q ss_pred HHhhcceeeccceeeee-----cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 11 ERIKGKTVEVGRAHFET-----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~-----~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
+..++++.+.....+.+ ....++|||||||++|.+++..+++.+|++|+|+|++++.. ..|+++|+..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~ 124 (403)
T 3sjy_A 51 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVAL 124 (403)
T ss_dssp CTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHH
T ss_pred ccccceecccccccccccccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHH
Confidence 34556665544333222 23789999999999999999999999999999999999862 26999999999
Q ss_pred HHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccHH
Q 016750 86 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 165 (383)
Q Consensus 86 ~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~ 165 (383)
+.++++++|+++||+|+ .+ .+...+..+++.++++..+.. .++++++||++|.|+++ |+
T Consensus 125 ~~~~~~~iivviNK~Dl--~~--~~~~~~~~~~i~~~l~~~~~~---~~~ii~vSA~~g~gi~~--------------L~ 183 (403)
T 3sjy_A 125 GIIGVKNLIIVQNKVDV--VS--KEEALSQYRQIKQFTKGTWAE---NVPIIPVSALHKINIDS--------------LI 183 (403)
T ss_dssp HHHTCCCEEEEEECGGG--SC--HHHHHHHHHHHHHHHTTSTTT---TCCEEECBTTTTBSHHH--------------HH
T ss_pred HHcCCCCEEEEEECccc--cc--hHHHHHHHHHHHHHHHhhCCC---CCEEEEEECCCCcChHH--------------HH
Confidence 99998669999999999 43 334455666777777665543 57899999999999998 56
Q ss_pred HHhhc-cCCCCCCCCCCeeEEEEEEEc--c--------CCeEEEEEEEEeEEecCCEEEEecCCc------------EEE
Q 016750 166 EALDR-IEITPRDPNGPFRMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA------------QVK 222 (383)
Q Consensus 166 ~~l~~-~~~~~~~~~~p~~~~I~~~~~--~--------~G~vv~G~V~sG~l~~gd~v~i~p~~~------------~~~ 222 (383)
+.|.. ++++.+..+.|++++|+++|. + +|+|++|+|.+|+|++||+|.+.|++. ..+
T Consensus 184 ~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~ 263 (403)
T 3sjy_A 184 EGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTK 263 (403)
T ss_dssp HHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEE
Confidence 66654 777777888999999999873 2 789999999999999999999999875 579
Q ss_pred EEEEEECCccceecCCCCeEEEEEe---cCCccCceeeEEEecCCCCcccccEEEEEEEEeccc-------ccccccCCc
Q 016750 223 VLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGY 292 (383)
Q Consensus 223 V~sI~~~~~~v~~a~aG~~v~l~l~---g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~g~ 292 (383)
|++|+++++++++|.|||+|+++|+ +++..|+.+|++|++++.+++.++.|+|++.|++.. ...++..|+
T Consensus 264 v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~ 343 (403)
T 3sjy_A 264 ISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKE 343 (403)
T ss_dssp EEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTC
T ss_pred EEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCC
Confidence 9999999999999999999999987 677789999999999998888889999999996532 146799999
Q ss_pred EEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEEEEEEECceEEeeeccCccccc-eEEE-EeCC---cE
Q 016750 293 KAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLG-RFTL-RTEG---KT 367 (383)
Q Consensus 293 ~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~~~~~lg-r~il-r~~~---~t 367 (383)
++.+|+++.++.|+|..+. ++ .+++.|++|+|++.. . ||+| |+.+ |+
T Consensus 344 ~~~~~~gt~~~~~~v~~~~--------------------~~--~~~~~l~~p~~~~~g------~~r~~i~r~~~~~~r~ 395 (403)
T 3sjy_A 344 TLMLSVGSSTTLGIVTSVK--------------------KD--EIEVELRRPVAVWSN------NIRTVISRQIAGRWRM 395 (403)
T ss_dssp EEEEEETTEEEEEEEEEEC--------------------SS--EEEEEEEEEEECCSS------SCEEEEEEEETTEEEE
T ss_pred EEEEEECccEEEEEEEEec--------------------Cc--eEEEEeCCcEeeccC------CEEEEEEEEeCCcEEE
Confidence 9999999999999998652 12 588889999999875 5 8998 5443 89
Q ss_pred EEEEEEE
Q 016750 368 VAVGKVT 374 (383)
Q Consensus 368 vg~G~V~ 374 (383)
+|+|.|+
T Consensus 396 ~g~g~i~ 402 (403)
T 3sjy_A 396 IGWGLVE 402 (403)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999985
No 17
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=3.5e-44 Score=314.77 Aligned_cols=199 Identities=48% Similarity=0.818 Sum_probs=187.9
Q ss_pred CCCCeeEEEEEEEccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECCccceecCCCCeEEEEEecCCccCceee
Q 016750 178 PNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257 (383)
Q Consensus 178 ~~~p~~~~I~~~~~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G 257 (383)
.++||+|+|+++|++.|++++|+|++|+|++||+|.+.|++..++|++|+++++++++|.|||+|+++|+|++..++++|
T Consensus 3 ~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG 82 (204)
T 3e1y_E 3 LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPG 82 (204)
T ss_dssp ----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred CCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcccccEEEEEEEEeccccc-ccccCCcEEEEEEeeeEEEEEEEEEEEEeecCCCcccccccccccCCCEEE
Q 016750 258 FVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 336 (383)
Q Consensus 258 ~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~~~ 336 (383)
++|++++.+++.++.|+|++.| +++ +++..||++.+|+++.+++|+|..|.+++|.+|++..+.+|++|++||.+.
T Consensus 83 ~vl~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~ 159 (204)
T 3e1y_E 83 FILCDPNNLCHSGRTFDAQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCI 159 (204)
T ss_dssp CEEBCSSSCCCCCSEEEEEEEC---CSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEE
T ss_pred eEEECCCCCCchhEEEEEEEEE---eCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEE
Confidence 9999998888889999999999 666 579999999999999999999999999999999998888899999999999
Q ss_pred EEEEECceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 016750 337 CRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 379 (383)
Q Consensus 337 v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg~G~V~~~~~~ 379 (383)
|+|++.+|+|+|+|++++.+|||+|||+|+|+|+|+|+++.+.
T Consensus 160 v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 160 ARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp EEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred EEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999999875
No 18
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2.5e-33 Score=280.67 Aligned_cols=232 Identities=18% Similarity=0.209 Sum_probs=174.6
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
.+||++++||+|||||..+...++|+++.|+|||||||.||..++.++++.+|+||+||||..|+. .||+..|
T Consensus 73 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~-------~qT~~v~ 145 (548)
T 3vqt_A 73 ATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVE-------AQTRKLM 145 (548)
T ss_dssp ---------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSC-------HHHHHHH
T ss_pred cccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcc-------cccHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999984 8999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc------------------------------------
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS------------------------------------ 126 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 126 (383)
+++.+.++| .|++|||||++.++ +..+.+++.+.+...
T Consensus 146 ~~a~~~~lp-~i~fINK~Dr~~ad-----~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~ 219 (548)
T 3vqt_A 146 DVCRMRATP-VMTFVNKMDREALH-----PLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRI 219 (548)
T ss_dssp HHHHHTTCC-EEEEEECTTSCCCC-----HHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------
T ss_pred HHHHHhCCc-eEEEEecccchhcc-----hhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcc
Confidence 999999999 77899999997765 334444444443210
Q ss_pred -----------------------------------CCC-------CCCCceEEEccccccccccccccCCCCCCCCcccH
Q 016750 127 -----------------------------------GYN-------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 164 (383)
Q Consensus 127 -----------------------------------~~~-------~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L 164 (383)
+-. ...-+|+++.||+++.|+.. |
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~--------------L 285 (548)
T 3vqt_A 220 QSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVRE--------------M 285 (548)
T ss_dssp CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHH--------------H
T ss_pred cccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCcceeeecccccCcCHHH--------------H
Confidence 000 01124678889999999887 4
Q ss_pred HH-HhhccCCCCC---------CCCCCeeEEEEEEEc-----cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC
Q 016750 165 FE-ALDRIEITPR---------DPNGPFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD 229 (383)
Q Consensus 165 ~~-~l~~~~~~~~---------~~~~p~~~~I~~~~~-----~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~ 229 (383)
++ +++.+|+|.. ..+.||...|+++.. ..|++.++||+||+|+.|+.|++...+++.+|..+...
T Consensus 286 Ld~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~ 365 (548)
T 3vqt_A 286 LDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIF 365 (548)
T ss_dssp HHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEEC
T ss_pred HHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhh
Confidence 44 4455666642 236788888888763 47999999999999999999999999999999988765
Q ss_pred ----CccceecCCCCeEEEEEecCCccCceeeEEEecCCC
Q 016750 230 ----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 265 (383)
Q Consensus 230 ----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~ 265 (383)
..++++|.|||+++ +.|++. +..|++|++.+.
T Consensus 366 ~g~~~~~v~~a~AGdIva--i~gl~~--~~~GDTl~~~~~ 401 (548)
T 3vqt_A 366 MAQDRTGVEEAFPGDIIG--IPNHGT--IKIGDTFTESKE 401 (548)
T ss_dssp CCSSCCSSCEECTTCEEE--EECSSC--CCTTCEEESSSS
T ss_pred ccccccccCEEecCCEEE--ecCCcc--CccCCEecCCCC
Confidence 57899999999999 667654 899999998764
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=7.3e-32 Score=270.90 Aligned_cols=232 Identities=22% Similarity=0.357 Sum_probs=178.1
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec-----CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCC
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGG 76 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~-----~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~ 76 (383)
.+++|++++|++||+|+......+.|. ++.++|||||||.+|..++.++++.+|++|+|||+++|.. .
T Consensus 40 ~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~-------~ 112 (600)
T 2ywe_A 40 EQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE-------A 112 (600)
T ss_dssp ----------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC-------H
T ss_pred ccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc-------H
Confidence 367899999999999999998888775 3789999999999999999999999999999999999874 6
Q ss_pred chHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCC
Q 016750 77 QTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLC 156 (383)
Q Consensus 77 ~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~ 156 (383)
|+.+++..+...++| +|+++||+|++..+ .++..+++.+ .+++. ..+++++||++|.|+.++
T Consensus 113 qt~~~~~~a~~~~ip-iIvviNKiDl~~a~-----~~~v~~el~~---~lg~~---~~~vi~vSAktg~GI~~L------ 174 (600)
T 2ywe_A 113 QTVANFWKAVEQDLV-IIPVINKIDLPSAD-----VDRVKKQIEE---VLGLD---PEEAILASAKEGIGIEEI------ 174 (600)
T ss_dssp HHHHHHHHHHHTTCE-EEEEEECTTSTTCC-----HHHHHHHHHH---TSCCC---GGGCEECBTTTTBSHHHH------
T ss_pred HHHHHHHHHHHCCCC-EEEEEeccCccccC-----HHHHHHHHHH---hhCCC---cccEEEEEeecCCCchHH------
Confidence 999999999999998 88999999995432 2333344433 34543 236999999999999984
Q ss_pred CCCCcccHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC---Cc
Q 016750 157 PWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DN 231 (383)
Q Consensus 157 ~w~~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~---~~ 231 (383)
|...+..+++|..+.+.|+++.|++++ +..|++++|+|.+|+|++||.|.+.|.+...+|++|..+ ..
T Consensus 175 -------le~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~ 247 (600)
T 2ywe_A 175 -------LEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMT 247 (600)
T ss_dssp -------HHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEE
T ss_pred -------HHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCce
Confidence 233456678887778899999999987 457999999999999999999999999999999999875 36
Q ss_pred cceecCCCCeEEEEEecC-CccCceeeEEEecCCCC
Q 016750 232 RVRHAGPGENLRIRLSGI-EEEDILSGFVLSSVAKP 266 (383)
Q Consensus 232 ~v~~a~aG~~v~l~l~g~-~~~~i~~G~vl~~~~~~ 266 (383)
+++++.|||++.+. .|+ +..++++|++|+.++.+
T Consensus 248 ~v~~~~aGdi~~v~-~gi~~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 248 KFDKLSAGDVGYIA-ASIKDVRDIRIGDTITHAKNP 282 (600)
T ss_dssp EESCEETTCEEEEE-SSCCCTTSSCTTCEEEESSSC
T ss_pred ECCEEecCceeeee-ccccchhhccCCCEEEeCCCc
Confidence 78999999977753 555 35679999999987754
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.97 E-value=6.5e-31 Score=264.51 Aligned_cols=232 Identities=21% Similarity=0.328 Sum_probs=175.3
Q ss_pred ceecCCCHHHHhhcceeeccceeeeec-----CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCC
Q 016750 2 AYIMDTNEEERIKGKTVEVGRAHFETE-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGG 76 (383)
Q Consensus 2 a~~~D~~~~E~~rG~Ti~~~~~~~~~~-----~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~ 76 (383)
++++|++++|++||+|+......+.|. ++.++|||||||.+|..++.++++.+|++|+|+|++++.. .
T Consensus 38 ~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-------~ 110 (599)
T 3cb4_D 38 AQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-------A 110 (599)
T ss_dssp -------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-------T
T ss_pred ccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-------H
Confidence 357899999999999999998888775 3789999999999999999999999999999999999874 7
Q ss_pred chHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCC
Q 016750 77 QTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLC 156 (383)
Q Consensus 77 ~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~ 156 (383)
|+.+++..+...++| +|+++||+|++..+ .++..+++.+. +++. ..+++++||++|.|+.++
T Consensus 111 qt~~~~~~~~~~~ip-iIvViNKiDl~~a~-----~~~v~~ei~~~---lg~~---~~~vi~vSAktg~GI~~L------ 172 (599)
T 3cb4_D 111 QTLANCYTAMEMDLE-VVPVLNKIDLPAAD-----PERVAEEIEDI---VGID---ATDAVRCSAKTGVGVQDV------ 172 (599)
T ss_dssp HHHHHHHHHHHTTCE-EEEEEECTTSTTCC-----HHHHHHHHHHH---TCCC---CTTCEEECTTTCTTHHHH------
T ss_pred HHHHHHHHHHHCCCC-EEEeeeccCccccc-----HHHHHHHHHHH---hCCC---cceEEEeecccCCCchhH------
Confidence 999999999999998 88999999995432 23344444443 3443 236899999999999984
Q ss_pred CCCCcccHHHHhhccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC---Cc
Q 016750 157 PWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DN 231 (383)
Q Consensus 157 ~w~~g~~L~~~l~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~---~~ 231 (383)
+..++..+++|..+.+.|+++.|.+++ +..|.+++|+|.+|+|+.||++.+.+.+...+|.+|... ..
T Consensus 173 -------l~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~ 245 (599)
T 3cb4_D 173 -------LERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQV 245 (599)
T ss_dssp -------HHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEE
T ss_pred -------HHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCce
Confidence 223456677777788899999999987 458999999999999999999999999999999999874 46
Q ss_pred cceecCCCCeEEEEEecC-CccCceeeEEEecCCCC
Q 016750 232 RVRHAGPGENLRIRLSGI-EEEDILSGFVLSSVAKP 266 (383)
Q Consensus 232 ~v~~a~aG~~v~l~l~g~-~~~~i~~G~vl~~~~~~ 266 (383)
+++++.|||++.+ +.|+ +..++++||+++..+.+
T Consensus 246 ~~~~~~aGdi~~~-~~gi~~~~~~~~GDtl~~~~~~ 280 (599)
T 3cb4_D 246 DRTELKCGEVGWL-VCAIKDIHGAPVGDTLTLARNP 280 (599)
T ss_dssp ECSEECTTCEEEE-ECCCSSGGGSCTTCEEEESSSC
T ss_pred ECCEEcCCCeeEe-eccccccccCccCCEeeecCCc
Confidence 7899999997665 4555 35678999999987654
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.97 E-value=7.9e-31 Score=270.96 Aligned_cols=232 Identities=21% Similarity=0.261 Sum_probs=168.5
Q ss_pred eecCCCHHHHhhcceeeccceeeeec-------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccC
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETE-------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKG 75 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~-------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~ 75 (383)
.+||++++||+|||||..+...+.|. ++.|+|||||||.||..++.++++.+|+||+||||.+|+.
T Consensus 51 ~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~------- 123 (709)
T 4fn5_A 51 ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE------- 123 (709)
T ss_dssp -----------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-------
T ss_pred ccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-------
Confidence 36999999999999999999999874 6899999999999999999999999999999999999985
Q ss_pred CchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcC----------------------------
Q 016750 76 GQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG---------------------------- 127 (383)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 127 (383)
.||+..|+++...++| .|++|||||++.++ +....+++...+...-
T Consensus 124 ~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a~-----~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~ 197 (709)
T 4fn5_A 124 PQSETVWRQANKYGVP-RIVYVNKMDRQGAN-----FLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWN 197 (709)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEEECSSSTTCC-----HHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEE
T ss_pred hhHHHHHHHHHHcCCC-eEEEEccccccCcc-----HHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEee
Confidence 8999999999999999 78899999996654 2333333433322100
Q ss_pred ------------------------------------------------CC-------------CCCCceEEEcccccccc
Q 016750 128 ------------------------------------------------YN-------------VKKDVQFLPISGLMGLN 146 (383)
Q Consensus 128 ------------------------------------------------~~-------------~~~~~~~i~iSa~~g~~ 146 (383)
+. ...-.|++..||+++.|
T Consensus 198 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~g 277 (709)
T 4fn5_A 198 DDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKG 277 (709)
T ss_dssp C--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBT
T ss_pred cccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCc
Confidence 00 00123556667777777
Q ss_pred ccccccCCCCCCCCcccHHH-HhhccCCCC--------------------CCCCCCeeEEEEEEEc--cCCeEEEEEEEE
Q 016750 147 MKTRVDKSLCPWWNGPCLFE-ALDRIEITP--------------------RDPNGPFRMPIIDKFK--DMGTVVMGKVES 203 (383)
Q Consensus 147 i~~~~~~~~~~w~~g~~L~~-~l~~~~~~~--------------------~~~~~p~~~~I~~~~~--~~G~vv~G~V~s 203 (383)
+.. |++ .++.+|+|. .+.++|+.+.|+++.. ..|.+.++||+|
T Consensus 278 v~~--------------lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~s 343 (709)
T 4fn5_A 278 VPL--------------VLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYS 343 (709)
T ss_dssp HHH--------------HHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEE
T ss_pred hHH--------------HHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEeccC
Confidence 665 344 345566552 3567899999999873 589999999999
Q ss_pred eEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCCC
Q 016750 204 GSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 265 (383)
Q Consensus 204 G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~ 265 (383)
|+|+.||+|++...++..+|..+... ..++++|.||++++ +.|++. +..|++|++.+.
T Consensus 344 Gtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~--i~Gl~~--~~~gdTl~~~~~ 405 (709)
T 4fn5_A 344 GVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAA--LIGMKD--VTTGDTLCSIEK 405 (709)
T ss_dssp SCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEE--ECSCSS--CCTTCEEECSSS
T ss_pred CCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeee--ecCCCc--CccCCEecCCCc
Confidence 99999999998888888888888654 67899999999999 678754 899999998764
No 22
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.97 E-value=3.5e-32 Score=277.59 Aligned_cols=233 Identities=21% Similarity=0.314 Sum_probs=181.7
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
.+||++++||+|||||..+...+.|+++.|+|||||||.||..++.++++.+|+||+||||.+|+. +||+.+|
T Consensus 40 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~-------~qT~~v~ 112 (638)
T 3j25_A 40 TRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ-------AQTRILF 112 (638)
T ss_dssp CSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTC-------SHHHHHH
T ss_pred cccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCc-------HHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999984 8999999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHH--------------------------------------HHHHH
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM--------------------------------------TPFLK 124 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~ 124 (383)
+++...++| .|+++||||++.+++. ...+++.+.+ ..++.
T Consensus 113 ~~a~~~~lp-~i~~INKmDr~~a~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~ 190 (638)
T 3j25_A 113 HALRKMGIP-TIFFINKIDQNGIDLS-TVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMS 190 (638)
T ss_dssp HHHHHHTCS-CEECCEECCSSSCCSH-HHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHcCCC-eEEEEeccccccCCHH-HHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhcc
Confidence 999999999 6789999999766532 1122221111 00000
Q ss_pred hcCCC-------------CCCCceEEEccccccccccccccCCCCCCCCcccHHH-HhhccCCCCCCCCCCeeEEEEEEE
Q 016750 125 ASGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMPIIDKF 190 (383)
Q Consensus 125 ~~~~~-------------~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~-~l~~~~~~~~~~~~p~~~~I~~~~ 190 (383)
.-.+. ...-.|++..||+++.|+.. |++ ..+.+|+|....+.|+...|+++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~--------------LLd~i~~~~p~p~~~~~~~~~~~Vfk~~ 256 (638)
T 3j25_A 191 GKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDN--------------LIEVITNKFYSSTHRGPSELCGNVFKIE 256 (638)
T ss_dssp HCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHH--------------HHHHHHHSCCCSGGGSCCCCCBEEBCCC
T ss_pred CCccchHHHHHHHhhhhcccccccccccccccCCCchh--------------HhhhhhccccCcccchhhhhcceeeeee
Confidence 00000 00124677789999998887 445 446678887777889999999887
Q ss_pred --ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 191 --KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 191 --~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
+..|+++++||+||+|+.||.|++...+ +.+|..+... ..++++|.|||++++ .| .+++.|+++++..
T Consensus 257 ~d~~~G~la~~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g---~~~~~~~tl~d~~ 330 (638)
T 3j25_A 257 YTKKRQRLAYIRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVIL--QN---EFLKLNSVLGDTK 330 (638)
T ss_dssp CCSTTCCCCBCCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCC--CS---SSCSSEECSSSSS
T ss_pred eeccCceEEEEEEEcCcccCCCccccccCc-ceeEEeeecccccccccccccccceEEEE--ec---cccccCceecCCC
Confidence 4589999999999999999999876654 3456665443 568999999999884 44 3467888888765
No 23
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.96 E-value=3.1e-29 Score=249.68 Aligned_cols=230 Identities=17% Similarity=0.220 Sum_probs=183.7
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
++|+.+.|++||+|++.....+.++++.++|||||||.+|...+.++++.+|++|+|+|++.+.. .++..++.
T Consensus 56 ~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~-------~~t~~~~~ 128 (528)
T 3tr5_A 56 TSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVE-------PRTIKLME 128 (528)
T ss_dssp HHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHH
T ss_pred ecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999874 68999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc--------C----------------------------
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS--------G---------------------------- 127 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~--------~---------------------------- 127 (383)
.+...++| +++++||+|++..+ ..+..+++.+.+... +
T Consensus 129 ~~~~~~iP-iivviNK~Dl~~~~-----~~~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~ 202 (528)
T 3tr5_A 129 VCRLRHTP-IMTFINKMDRDTRP-----SIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVG 202 (528)
T ss_dssp HHHTTTCC-EEEEEECTTSCCSC-----HHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTT
T ss_pred HHHHcCCC-EEEEEeCCCCcccc-----HHHHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCccc
Confidence 99999998 88999999995443 112223333322110 0
Q ss_pred ------------------------------------------CCCCCCceEEEccccccccccccccCCCCCCCCcccHH
Q 016750 128 ------------------------------------------YNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 165 (383)
Q Consensus 128 ------------------------------------------~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~ 165 (383)
+.....+|++++||++|.|+.++ +
T Consensus 203 ~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~L--------------l 268 (528)
T 3tr5_A 203 ESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGEL--------------L 268 (528)
T ss_dssp CSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHH--------------H
T ss_pred ccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCceeEEEeccccCCccHHHH--------------H
Confidence 00011237889999999999984 4
Q ss_pred HH-hhccCCCCCC---------CCCCeeEEEEEEEc-----cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC-
Q 016750 166 EA-LDRIEITPRD---------PNGPFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD- 229 (383)
Q Consensus 166 ~~-l~~~~~~~~~---------~~~p~~~~I~~~~~-----~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~- 229 (383)
+. .+.+|+|... .+.|+...|+++.. .+|+++++||+||+|+.|+.|++.+.++..+|.++...
T Consensus 269 d~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~ 348 (528)
T 3tr5_A 269 DAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFM 348 (528)
T ss_dssp HHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCB
T ss_pred HHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEe
Confidence 43 3445554321 25789999998763 67999999999999999999999999999999998763
Q ss_pred ---CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 230 ---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 230 ---~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
++++++|.|||+++ +.++. +++.||+|++..
T Consensus 349 ~~~~~~v~~a~aGdI~~--~~~l~--~~~~GDtl~~~~ 382 (528)
T 3tr5_A 349 AGKRENAEEAWPGDIIG--LHNHG--TIQIGDTFTQGE 382 (528)
T ss_dssp TTCSSCCSEECTTCEEE--EEESS--SCCTTCEEESSC
T ss_pred CCCeeECCEECCCCEEE--EcCCC--CCccCCEEcCCC
Confidence 67899999999988 56554 488999999854
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.96 E-value=2.4e-28 Score=251.50 Aligned_cols=231 Identities=20% Similarity=0.239 Sum_probs=185.4
Q ss_pred eecCCCHHHHhhcceeeccceeeeecC-------cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccC
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETET-------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKG 75 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~-------~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~ 75 (383)
+++|+.++|++||+|+......+.+++ +.++|||||||.+|...+.++++.+|++|+|||++.+..
T Consensus 48 ~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~------- 120 (704)
T 2rdo_7 48 ATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ------- 120 (704)
T ss_pred eeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCc-------
Confidence 678999999999999999999999887 999999999999999999999999999999999999874
Q ss_pred CchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcC--------------------------CC
Q 016750 76 GQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG--------------------------YN 129 (383)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~ 129 (383)
.|+.+++..+...++| +++++||+|+...+ +.++.++++..+.... |.
T Consensus 121 ~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~-----~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~ 194 (704)
T 2rdo_7 121 PQSETVWRQANKYKVP-RIAFVNKMDRMGAN-----FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWN 194 (704)
T ss_pred HHHHHHHHHHHHcCCC-EEEEEeCCCccccc-----HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhccc
Confidence 6899999999999999 78899999995432 3344444444332100 00
Q ss_pred ---------------------------------------------------------------CCCCceEEEcccccccc
Q 016750 130 ---------------------------------------------------------------VKKDVQFLPISGLMGLN 146 (383)
Q Consensus 130 ---------------------------------------------------------------~~~~~~~i~iSa~~g~~ 146 (383)
....+|+++.||+++.|
T Consensus 195 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~G 274 (704)
T 2rdo_7 195 DADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKG 274 (704)
T ss_pred CccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcc
Confidence 00114677788888888
Q ss_pred ccccccCCCCCCCCcccHHH-HhhccCCCCC--------------------CCCCCeeEEEEEEEc--cCCeEEEEEEEE
Q 016750 147 MKTRVDKSLCPWWNGPCLFE-ALDRIEITPR--------------------DPNGPFRMPIIDKFK--DMGTVVMGKVES 203 (383)
Q Consensus 147 i~~~~~~~~~~w~~g~~L~~-~l~~~~~~~~--------------------~~~~p~~~~I~~~~~--~~G~vv~G~V~s 203 (383)
+..+ ++ +++.+|+|.. +.++|+.+.|++++. ..|++++|||+|
T Consensus 275 v~~L--------------Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~s 340 (704)
T 2rdo_7 275 VQAM--------------LDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYS 340 (704)
T ss_pred HHHH--------------HHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEe
Confidence 8774 33 3344554432 257899999999984 589999999999
Q ss_pred eEEecCCEEEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 204 GSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 204 G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
|+|+.||+|++.+.+...+|.+|... .+++++|.|||++++ .|++. +++|++|++.+
T Consensus 341 G~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i--~gl~~--~~~GdTl~~~~ 401 (704)
T 2rdo_7 341 GVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAA--IGLKD--VTTGDTLCDPD 401 (704)
T ss_pred eeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEE--eCccc--CccCCEEeCCC
Confidence 99999999999999999999999754 678999999999995 47754 79999999865
No 25
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.96 E-value=3.3e-28 Score=242.58 Aligned_cols=240 Identities=19% Similarity=0.215 Sum_probs=162.7
Q ss_pred ecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
++|+.++|++||+|++.....+.++++.++|||||||.+|...+.++++.+|++|+|+|+..+.. .++++++.
T Consensus 56 ~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-------~~t~~~~~ 128 (529)
T 2h5e_A 56 KSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-------DRTRKLME 128 (529)
T ss_dssp --------------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHH
T ss_pred eeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-------HHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999863 68999999
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccC----------
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK---------- 153 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~---------- 153 (383)
.+...++| +++++||+|+...+ ..++.+++.+.+...... ..+-..|+.++.|+.++...
T Consensus 129 ~~~~~~ip-iivviNK~Dl~~~~-----~~~~~~~i~~~l~~~~~~----~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g 198 (529)
T 2h5e_A 129 VTRLRDTP-ILTFMNKLDRDIRD-----PMELLDEVENELKIGCAP----ITWPIGCGKLFKGVYHLYKDETYLYQSGKG 198 (529)
T ss_dssp HHTTTTCC-EEEEEECTTSCCSC-----HHHHHHHHHHHHCCEEEE----SEEEESCGGGCCEEEETTTTEEEECCTTCC
T ss_pred HHHHcCCC-EEEEEcCcCCcccc-----HHHHHHHHHHHhCCCccc----eecceecccCcceeeehhhhhHhhhcccCC
Confidence 99888999 88999999995432 123344444433211000 01111334444433332110
Q ss_pred ---------------------------------------------------CCCCCCCcc--------cHHHHhhc-cCC
Q 016750 154 ---------------------------------------------------SLCPWWNGP--------CLFEALDR-IEI 173 (383)
Q Consensus 154 ---------------------------------------------------~~~~w~~g~--------~L~~~l~~-~~~ 173 (383)
...||+.|. .|++.+.. +|+
T Consensus 199 ~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~ 278 (529)
T 2h5e_A 199 HTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPA 278 (529)
T ss_dssp SSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCS
T ss_pred CcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCC
Confidence 011222221 24554433 555
Q ss_pred CCCC---------CCCCeeEEEEEEEc-----cCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----Ccccee
Q 016750 174 TPRD---------PNGPFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 235 (383)
Q Consensus 174 ~~~~---------~~~p~~~~I~~~~~-----~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~ 235 (383)
|... .+.||...|+++.. .+|++++|||.||+|+.||.|++.+.++..+|++|+.. ++++++
T Consensus 279 P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 358 (529)
T 2h5e_A 279 PMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEE 358 (529)
T ss_dssp SCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCE
T ss_pred CCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcce
Confidence 5321 14688888988752 47999999999999999999999999999999999875 689999
Q ss_pred cCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 236 AGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 236 a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
|.|||+++ +.+++ +++.||+|++++
T Consensus 359 a~aGdiv~--i~~l~--~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 359 AYPGDILG--LHNHG--TIQIGDTFTQGE 383 (529)
T ss_dssp ECTTCEEE--ECCSS--CCCTTCEEESSC
T ss_pred ECCCCEEE--EeccC--CCccCCEeecCC
Confidence 99999998 56664 488899999875
No 26
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.95 E-value=2.3e-27 Score=243.97 Aligned_cols=233 Identities=21% Similarity=0.251 Sum_probs=170.5
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
.++|+.++|++||+|+......+.++++.++|||||||.+|...+.++++.+|++|+|+|++.+.. .++.+++
T Consensus 50 ~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~-------~~t~~~~ 122 (691)
T 1dar_A 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE-------PQSETVW 122 (691)
T ss_dssp -----------------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHH
T ss_pred eeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcc-------hhhHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999874 6888999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc------------------------------------
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS------------------------------------ 126 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 126 (383)
..+...++| +++++||+|+...+ +..+.+++.+.+...
T Consensus 123 ~~~~~~~~p-~ivviNKiD~~~~~-----~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~ 196 (691)
T 1dar_A 123 RQAEKYKVP-RIAFANKMDKTGAD-----LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDI 196 (691)
T ss_dssp HHHHHTTCC-EEEEEECTTSTTCC-----HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCE
T ss_pred HHHHHcCCC-EEEEEECCCcccCC-----HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCcee
Confidence 999999999 78999999995432 233333333332210
Q ss_pred ---------------------------------------CCC-------------CCCCceEEEccccccccccccccCC
Q 016750 127 ---------------------------------------GYN-------------VKKDVQFLPISGLMGLNMKTRVDKS 154 (383)
Q Consensus 127 ---------------------------------------~~~-------------~~~~~~~i~iSa~~g~~i~~~~~~~ 154 (383)
.+. ...-+|+++.||++|.|+..
T Consensus 197 ~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~----- 271 (691)
T 1dar_A 197 REIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQL----- 271 (691)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHH-----
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHH-----
Confidence 000 00124688889998888877
Q ss_pred CCCCCCcccHHH-HhhccCCCCC------------------CCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEE
Q 016750 155 LCPWWNGPCLFE-ALDRIEITPR------------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLL 213 (383)
Q Consensus 155 ~~~w~~g~~L~~-~l~~~~~~~~------------------~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~ 213 (383)
|++ ++..+|+|.. +.++|+.+.|++++ +..|+++++||+||+|+.||+|+
T Consensus 272 ---------LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~ 342 (691)
T 1dar_A 272 ---------LLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVY 342 (691)
T ss_dssp ---------HHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEE
T ss_pred ---------HHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEE
Confidence 444 3444665543 35789999999998 45899999999999999999999
Q ss_pred EecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCCCC
Q 016750 214 VMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 266 (383)
Q Consensus 214 i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~ 266 (383)
..+.+...+|..|... ..++++|.|||++++ .|++. +..|++|++.+.+
T Consensus 343 ~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~~--~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 343 NTTKGRKERVARLLRMHANHREEVEELKAGDLGAV--VGLKE--TITGDTLVGEDAP 395 (691)
T ss_dssp ETTTTEEEECCEEEEECSSCEEEESEEETTCEEEE--ECCSS--CCTTCEEEETTCC
T ss_pred ecCCCcEEEEceEEEEeCCCceEcceecCCCEEEE--eCccc--CccCCEEecCCCc
Confidence 9988888999998754 578999999999995 47754 7889999987643
No 27
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=1.1e-26 Score=239.00 Aligned_cols=232 Identities=21% Similarity=0.227 Sum_probs=168.8
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
.++|+.++|++||+|+......+.+++++++|||||||.+|...+.++++.+|++|+|+|+..+.. .++..++
T Consensus 48 ~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~-------~~~~~~~ 120 (693)
T 2xex_A 48 SQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVE-------PQTETVW 120 (693)
T ss_dssp ----------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHH
T ss_pred eecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCc-------HHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999998864 6888899
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCC--------------------------C-C-----
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY--------------------------N-V----- 130 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~-~----- 130 (383)
..+...++| +++++||+|+...+ +..+.++++..+....+ . .
T Consensus 121 ~~~~~~~~p-~ilviNK~Dl~~~~-----~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~ 194 (693)
T 2xex_A 121 RQATTYGVP-RIVFVNKMDKLGAN-----FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEI 194 (693)
T ss_dssp HHHHHTTCC-EEEEEECTTSTTCC-----HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSC
T ss_pred HHHHHcCCC-EEEEEECCCccccc-----hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCcee
Confidence 999999998 88999999995432 33444445444321100 0 0
Q ss_pred --------------------------------------------------------CCCceEEEccccccccccccccCC
Q 016750 131 --------------------------------------------------------KKDVQFLPISGLMGLNMKTRVDKS 154 (383)
Q Consensus 131 --------------------------------------------------------~~~~~~i~iSa~~g~~i~~~~~~~ 154 (383)
..-+|+++.||+++.|+..
T Consensus 195 ~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~----- 269 (693)
T 2xex_A 195 EEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQL----- 269 (693)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHH-----
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHH-----
Confidence 0013566677777777665
Q ss_pred CCCCCCcccHHHH-hhccCCCCC--------------------CCCCCeeEEEEEEEc--cCCeEEEEEEEEeEEecCCE
Q 016750 155 LCPWWNGPCLFEA-LDRIEITPR--------------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDS 211 (383)
Q Consensus 155 ~~~w~~g~~L~~~-l~~~~~~~~--------------------~~~~p~~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~ 211 (383)
|++. ++.+|+|.. +.++|+.+.|++++. ..|+++++||+||+|+.||+
T Consensus 270 ---------LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~ 340 (693)
T 2xex_A 270 ---------MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSY 340 (693)
T ss_dssp ---------HHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEE
T ss_pred ---------HHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCE
Confidence 4443 344565532 257899999999984 58999999999999999999
Q ss_pred EEEecCCcEEEEEEEEEC----CccceecCCCCeEEEEEecCCccCceeeEEEecCCC
Q 016750 212 LLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 265 (383)
Q Consensus 212 v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~ 265 (383)
|+....++..+|.+|... ..++++|.|||++++ .|++. ++.|++|++.+.
T Consensus 341 v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~~--~~~GdTl~~~~~ 394 (693)
T 2xex_A 341 VKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAA--VGLKD--TGTGDTLCGEKN 394 (693)
T ss_dssp EEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEE--ESCSS--CCTTCEEEETTC
T ss_pred EEecCCCceEEeceEEEEeCCCceEccccCcCCEEEE--eCccc--CccCCEEecCCC
Confidence 999888888999999664 478999999999995 47754 788999998763
No 28
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.94 E-value=4.2e-29 Score=247.85 Aligned_cols=227 Identities=24% Similarity=0.358 Sum_probs=176.5
Q ss_pred HHHhhcceeeccceeeee-cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc
Q 016750 10 EERIKGKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL 88 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (383)
.+..+|+|++.....+.+ ++..++|||||||++|...+.++++.+|++|||+|++++.+ +|+.+++..+...
T Consensus 31 ~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~-------~qt~e~l~~~~~~ 103 (537)
T 3izy_P 31 AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM-------KQTVESIQHAKDA 103 (537)
T ss_dssp HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCC-------HHHHHHHHHHHTT
T ss_pred cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCcc-------HHHHHHHHHHHHc
Confidence 445679999999998887 67799999999999999999999999999999999999875 7999999999999
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccccCCCCCCCCcccHHHHh
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEAL 168 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l 168 (383)
++| +|+++||+|++..++. ...+++...-.... .....++++++||++|.|++++.+. |...+
T Consensus 104 ~vP-iIVViNKiDl~~~~~~-----~v~~~l~~~~~~~e-~~~~~~~iv~vSAktG~GI~eLle~----------I~~l~ 166 (537)
T 3izy_P 104 HVP-IVLAINKCDKAEADPE-----KVKKELLAYDVVCE-DYGGDVQAVHVSALTGENMMALAEA----------TIALA 166 (537)
T ss_dssp TCC-EEECCBSGGGTTTSCC-----SSSSHHHHTTSCCC-CSSSSEEECCCCSSSSCSSHHHHHH----------HHHHH
T ss_pred CCc-EEEEEecccccccchH-----HHHHHHHhhhhhHH-hcCCCceEEEEECCCCCCchhHHHH----------HHHhh
Confidence 999 8999999999543321 11112211100000 0112468999999999999996441 33333
Q ss_pred hccCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEECC-ccceecCCCCeEEEE
Q 016750 169 DRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD-NRVRHAGPGENLRIR 245 (383)
Q Consensus 169 ~~~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~~-~~v~~a~aG~~v~l~ 245 (383)
+ .+.+....+.|++++|.+++ ++.|++++|+|.+|+|++||.+. ++....+|++|+.++ .++++|.||++|+
T Consensus 167 ~-~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~--~g~~~~kVr~i~~~~g~~v~~A~~G~~V~-- 241 (537)
T 3izy_P 167 E-MLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILV--AGKSWAKVRLMFDENGRAVNEAYPSMPVG-- 241 (537)
T ss_dssp T-TCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEEC--CSSCCEEEEEEEECCCCCSCCSCCSTTCC--
T ss_pred h-cccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEE--eCCceEEEEEEEcCCCCCCcEEcCCCEEE--
Confidence 3 23344566789999999998 56899999999999999999874 345568999999985 7999999999999
Q ss_pred EecCCccCceeeEEEecCCCC
Q 016750 246 LSGIEEEDILSGFVLSSVAKP 266 (383)
Q Consensus 246 l~g~~~~~i~~G~vl~~~~~~ 266 (383)
+.|++ ....+|++++..+++
T Consensus 242 i~g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 242 IIGWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp CCSSE-EEEEEESSCCSCCSS
T ss_pred EECCC-CCCCCCCEEEecCCh
Confidence 45766 335899999988643
No 29
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.94 E-value=1e-26 Score=238.29 Aligned_cols=230 Identities=24% Similarity=0.295 Sum_probs=183.6
Q ss_pred eecCCCHHHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+++|..++|++||+|+......+.+.+..++|||||||.+|...+.++++.+|++++|+|+..+.. .++++++
T Consensus 47 ~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~-------~qt~~~~ 119 (665)
T 2dy1_A 47 TTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-------VGTERAW 119 (665)
T ss_dssp CSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHH
T ss_pred ccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccc-------hhHHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999998874 6899999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHH--------------------------------------
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK-------------------------------------- 124 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 124 (383)
..+...++| +|+++||+|+. .. ..++.+++...+.
T Consensus 120 ~~~~~~~ip-~ilv~NKiD~~-~~-----~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~ 192 (665)
T 2dy1_A 120 TVAERLGLP-RMVVVTKLDKG-GD-----YYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAE 192 (665)
T ss_dssp HHHHHTTCC-EEEEEECGGGC-CC-----HHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEEC
T ss_pred HHHHHccCC-EEEEecCCchh-hh-----HHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEec
Confidence 999999998 78899999995 32 2233333333222
Q ss_pred ---------------------------------hcCCC-------------CCCCceEEEccccccccccccccCCCCCC
Q 016750 125 ---------------------------------ASGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPW 158 (383)
Q Consensus 125 ---------------------------------~~~~~-------------~~~~~~~i~iSa~~g~~i~~~~~~~~~~w 158 (383)
...+. ....+++++.||++|.|+.+
T Consensus 193 ~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~--------- 263 (665)
T 2dy1_A 193 VPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLP--------- 263 (665)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHH---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHH---------
Confidence 00000 00125788899999999887
Q ss_pred CCcccHHHHh-hccCCCCCC-CCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEEC----C
Q 016750 159 WNGPCLFEAL-DRIEITPRD-PNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----D 230 (383)
Q Consensus 159 ~~g~~L~~~l-~~~~~~~~~-~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~~----~ 230 (383)
|++.+ ..+|+|... .++|+.+.|++++ ++.|++++|||+||+|+.||+|++.+ ...+|.+|... .
T Consensus 264 -----Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~ 336 (665)
T 2dy1_A 264 -----LLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDL 336 (665)
T ss_dssp -----HHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEE
T ss_pred -----HHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCe
Confidence 44444 456655433 5789999999998 45899999999999999999999887 67799998763 5
Q ss_pred ccceecCCCCeEEEEEecCCccCceeeEEEecCCCC
Q 016750 231 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 266 (383)
Q Consensus 231 ~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~ 266 (383)
.++++|.||+++++ .|++ ++++|++|++.+.+
T Consensus 337 ~~v~~a~aG~iv~i--~gl~--~~~~Gdtl~~~~~~ 368 (665)
T 2dy1_A 337 LEVEEAEAGFVLGV--PKAE--GLHRGMVLWQGEKP 368 (665)
T ss_dssp EEESCEETTCEEEE--SSCT--TCCTTCEEESSSCC
T ss_pred eECCEECCCCEEEE--eCCc--cCccCCEEecCCCc
Confidence 68999999999994 5665 48899999987643
No 30
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.94 E-value=4.7e-27 Score=231.27 Aligned_cols=217 Identities=28% Similarity=0.348 Sum_probs=169.9
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCC
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 91 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (383)
..+|+|++.....+++++..++|||||||++|...+.++++.+|++|||+|+++|.+ +|+.+++..+...++|
T Consensus 33 e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-------~qT~e~l~~~~~~~vP 105 (501)
T 1zo1_I 33 EAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-------PQTIEAIQHAKAAQVP 105 (501)
T ss_dssp TBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-------TTTHHHHHHHHHTTCC
T ss_pred cCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-------HHHHHHHHHHHhcCce
Confidence 348999999999999999999999999999999999999999999999999999875 7999999999999999
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC---CCCceEEEccccccccccccccCCCCCCCCcccHHHHh
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEAL 168 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l 168 (383)
+|+++||+|++..++. + +.+ .+...++.+ ...++++++||++|.|++++ ++.|
T Consensus 106 -iIVviNKiDl~~~~~~--~---v~~----~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL--------------le~I 161 (501)
T 1zo1_I 106 -VVVAVNKIDKPEADPD--R---VKN----ELSQYGILPEEWGGESQFVHVSAKAGTGIDEL--------------LDAI 161 (501)
T ss_dssp -EEEEEECSSSSTTCCC--C---TTC----CCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH--------------HHHT
T ss_pred -EEEEEEeccccccCHH--H---HHH----HHHHhhhhHHHhCCCccEEEEeeeeccCcchh--------------hhhh
Confidence 9999999999543221 1 111 111111111 12468999999999999984 3433
Q ss_pred hc---cCCCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcEEEEEEEEE-CCccceecCCCCeE
Q 016750 169 DR---IEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC-DDNRVRHAGPGENL 242 (383)
Q Consensus 169 ~~---~~~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG~~v 242 (383)
.. +..+....+.|+++.|.+++ ++.|++++|+|.+|+|++||.+.+.+. ..+|++|+. ++.++++|.||+.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~--~~kVr~i~~~~g~~v~~a~~g~~V 239 (501)
T 1zo1_I 162 LLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFE--YGRVRAMRNELGQEVLEAGPSIPV 239 (501)
T ss_dssp TTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBS--SCEEEEECCTTTTSEEEECCSSCS
T ss_pred hhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccc--eeEEEEEEecCCCcCcEeccCCcE
Confidence 22 22233445778899999998 468999999999999999999998664 469999986 46899999999999
Q ss_pred EEEEecCCccCceeeEEEecCC
Q 016750 243 RIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 243 ~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
.+ .|++. ....|++++...
T Consensus 240 ~i--~gl~~-~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 240 EI--LGLSG-VPAAGDEVTVVR 258 (501)
T ss_dssp SS--EEECS-CCCTTEEEEEEC
T ss_pred EE--eCCCC-CCCCCCEEEecC
Confidence 85 35542 246888887654
No 31
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.93 E-value=1.5e-25 Score=225.85 Aligned_cols=229 Identities=20% Similarity=0.380 Sum_probs=167.7
Q ss_pred hcceeeccceeeeec------------------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccC
Q 016750 14 KGKTVEVGRAHFETE------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKG 75 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~------------------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~ 75 (383)
+|+|.+++...+.++ ...++|||||||++|...+.++++.+|++|+|+|+++|+.
T Consensus 36 ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~------- 108 (594)
T 1g7s_A 36 GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFK------- 108 (594)
T ss_dssp --CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCC-------
T ss_pred CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------
Confidence 578887766555432 1259999999999999888889999999999999999874
Q ss_pred CchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc------------------HHHHHHHHHHHHHHHHhcCCCC-------
Q 016750 76 GQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV------- 130 (383)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~------- 130 (383)
+|+.+++..++..++| +|+++||+|+... |. ...+.+...++...+...++..
T Consensus 109 ~qT~e~l~~l~~~~vP-iIVViNKiDl~~~-~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~ 186 (594)
T 1g7s_A 109 PQTQEALNILRMYRTP-FVVAANKIDRIHG-WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVT 186 (594)
T ss_dssp HHHHHHHHHHHHTTCC-EEEEEECGGGSTT-CCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCS
T ss_pred HhHHHHHHHHHHcCCe-EEEEecccccccc-cccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 7999999999999999 8999999999421 21 1223344444555555545421
Q ss_pred --CCCceEEEccccccccccccccCCCCCCCCcccHHHHhhc-cC-CCCCCCCCCeeEEEEEEE--ccCCeEEEEEEEEe
Q 016750 131 --KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESG 204 (383)
Q Consensus 131 --~~~~~~i~iSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~-~~-~~~~~~~~p~~~~I~~~~--~~~G~vv~G~V~sG 204 (383)
...++++|+||++|.|+.++++. +...+.. ++ ....+.++|+++.|++++ ++.|++++|+|.+|
T Consensus 187 ~~~~~vpvv~vSA~tG~GI~eLl~~----------I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G 256 (594)
T 1g7s_A 187 DFASQVSIIPISAITGEGIPELLTM----------LMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDG 256 (594)
T ss_dssp CTTTEEEEEECCTTTCTTHHHHHHH----------HHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEES
T ss_pred hccCcceEEEEeccCCCCchhHHHH----------HHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeC
Confidence 12468999999999999996441 2222222 11 112245789999999987 46789999999999
Q ss_pred EEecCCEEEEecCCcE--EEEEEEEEC------------CccceecC--CCCeEEEEEecCCccCceeeEEEecCCC
Q 016750 205 SVREGDSLLVMPNKAQ--VKVLAIYCD------------DNRVRHAG--PGENLRIRLSGIEEEDILSGFVLSSVAK 265 (383)
Q Consensus 205 ~l~~gd~v~i~p~~~~--~~V~sI~~~------------~~~v~~a~--aG~~v~l~l~g~~~~~i~~G~vl~~~~~ 265 (383)
+|++||.|.++|.+.. .+|++|... ..++++|. +|+.++ +.+++ ++..|+.|+...+
T Consensus 257 ~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~--~~~l~--~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 257 ILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV--APGID--DVMAGSPLRVVTD 329 (594)
T ss_dssp EEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEE--CSSCT--TBCTTCEEEECSS
T ss_pred EEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEE--EcccC--CCCCCCEEEecCC
Confidence 9999999999998764 499999753 34677787 677666 45554 4789999988764
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.91 E-value=1.2e-23 Score=220.54 Aligned_cols=250 Identities=18% Similarity=0.250 Sum_probs=168.4
Q ss_pred eecCCCHHHHhhcceeeccceeeeec----------------CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCC
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETE----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 66 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~----------------~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g 66 (383)
.++|+.++|++||+|+......+.+. ++.++|||||||.+|...+.++++.+|++|+|+|+.++
T Consensus 55 ~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 55 RFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp ------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB
T ss_pred eeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC
Confidence 46899999999999999988877775 78899999999999999999999999999999999998
Q ss_pred ccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCC--cc----HHHHHHHHHHHHHHHHhc-----C---CCCCC
Q 016750 67 EFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN--WS----KERYDEIESKMTPFLKAS-----G---YNVKK 132 (383)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~--~~----~~~~~~~~~~~~~~~~~~-----~---~~~~~ 132 (383)
.. .|+..++..+...++| +|+++||+|+...+ ++ ...+....++++..+..+ + +.+.
T Consensus 135 ~~-------~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~- 205 (842)
T 1n0u_A 135 VC-------VQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPA- 205 (842)
T ss_dssp SC-------HHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGG-
T ss_pred CC-------HHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceE-
Confidence 74 6888888888888998 78999999983111 11 233556666666666431 1 2211
Q ss_pred CceEEEccccccccccc----------cc---c-CCCCCCC------------C--------------------------
Q 016750 133 DVQFLPISGLMGLNMKT----------RV---D-KSLCPWW------------N-------------------------- 160 (383)
Q Consensus 133 ~~~~i~iSa~~g~~i~~----------~~---~-~~~~~w~------------~-------------------------- 160 (383)
..++...|+++|+++.- +. + -....|. .
T Consensus 206 ~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~ 285 (842)
T 1n0u_A 206 RGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLF 285 (842)
T ss_dssp GTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHH
T ss_pred EeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHH
Confidence 12466789988865320 00 0 0000110 0
Q ss_pred ------------------c---------------------------ccHHHHh-hccCCCC-------------------
Q 016750 161 ------------------G---------------------------PCLFEAL-DRIEITP------------------- 175 (383)
Q Consensus 161 ------------------g---------------------------~~L~~~l-~~~~~~~------------------- 175 (383)
| ..|++.+ +.+|+|.
T Consensus 286 e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~ 365 (842)
T 1n0u_A 286 TAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDAN 365 (842)
T ss_dssp HHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHH
T ss_pred HHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccc
Confidence 0 2233322 3345442
Q ss_pred ------CCCCCCeeEEEEEEEc--cCCe-EEEEEEEEeEEecCCEEEEecCC------c---EEEEEEEEEC----Cccc
Q 016750 176 ------RDPNGPFRMPIIDKFK--DMGT-VVMGKVESGSVREGDSLLVMPNK------A---QVKVLAIYCD----DNRV 233 (383)
Q Consensus 176 ------~~~~~p~~~~I~~~~~--~~G~-vv~G~V~sG~l~~gd~v~i~p~~------~---~~~V~sI~~~----~~~v 233 (383)
.+.++|+.+.|++++. ..|+ +.++||+||+|+.||.|++...+ . ..+|.+|... ..++
T Consensus 366 ~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v 445 (842)
T 1n0u_A 366 CIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPI 445 (842)
T ss_dssp HHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEE
T ss_pred cceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCccccc
Confidence 2457899999999974 5896 89999999999999999876432 3 5788898665 5789
Q ss_pred eecCCCCeEEEEEecCCccCceeeEEEecCC
Q 016750 234 RHAGPGENLRIRLSGIEEEDILSGFVLSSVA 264 (383)
Q Consensus 234 ~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~ 264 (383)
++|.|||+++ +.|++...++.| +|++.+
T Consensus 446 ~~~~aGdI~a--i~gl~~~~~~t~-Tl~~~~ 473 (842)
T 1n0u_A 446 DDCPAGNIIG--LVGIDQFLLKTG-TLTTSE 473 (842)
T ss_dssp SEEETTCEEE--EESCTTTCCSSE-EEESCT
T ss_pred ceeCCCCEEE--EEccccceecce-eecCCC
Confidence 9999999988 778876444556 888754
No 33
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.51 E-value=4.5e-14 Score=138.80 Aligned_cols=127 Identities=20% Similarity=0.344 Sum_probs=97.7
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCC----------CCChHHH-HHHhhhhcCEEEEEEECCCCccccccccCCchH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPG----------HKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG----------~~~~~~~-~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
+...|+|.+.....+++++..++|||||| +++|... +..+++.+|++|+|+|++.+.. .++.
T Consensus 224 ~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-------~~~~ 296 (456)
T 4dcu_A 224 SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDK 296 (456)
T ss_dssp CC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHH
T ss_pred CCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-------HHHH
Confidence 44568999999999999999999999999 4555443 4568899999999999999864 5888
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++..+...++| +|+|+||+|+ .+..+..+++..+.+.+.+...++ .+++++||++|.|++++.+
T Consensus 297 ~~~~~~~~~~~~-~ilv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 297 RIAGYAHEAGKA-VVIVVNKWDA--VDKDESTMKEFEENIRDHFQFLDY-----APILFMSALTKKRIHTLMP 361 (456)
T ss_dssp HHHHHHHHTTCE-EEEEEECGGG--SCCCSSHHHHHHHHHHHHCGGGTT-----SCEEECCTTTCTTGGGHHH
T ss_pred HHHHHHHHcCCC-EEEEEEChhc--CCCchHHHHHHHHHHHHhcccCCC-----CCEEEEcCCCCcCHHHHHH
Confidence 888888889988 8999999999 433344566777777777666553 4899999999999998754
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.50 E-value=2.9e-14 Score=139.38 Aligned_cols=128 Identities=20% Similarity=0.319 Sum_probs=91.8
Q ss_pred HHHhhcceeeccceeeeecCcEEEEEeCCCCC----------ChHH-HHHHhhhhcCEEEEEEECCCCccccccccCCch
Q 016750 10 EERIKGKTVEVGRAHFETETTRFTILDAPGHK----------SYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQT 78 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~----------~~~~-~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~ 78 (383)
.+...|+|++.....+++++..++||||||+. .|.. .+..+++.+|++++|+|++++.+ .|+
T Consensus 203 ~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s-------~~~ 275 (436)
T 2hjg_A 203 VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQD 275 (436)
T ss_dssp EC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHH
T ss_pred ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc-------HHH
Confidence 34567999999999999999999999999984 3332 24568889999999999999864 477
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 79 REHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 79 ~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+++..+...++| +|+|+||+|+ .+..+..+++..+++...+.... ..+++++||++|.|+.++.+
T Consensus 276 ~~~~~~~~~~~~~-iiiv~NK~Dl--~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 276 KRIAGYAHEAGKA-VVIVVNKWDA--VDKDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp HHHHHHHHHTTCE-EEEEEECGGG--SCCCTTHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred HHHHHHHHHcCCc-EEEEEECccC--CCcchHHHHHHHHHHHHhcccCC-----CCCEEEEecccCCCHHHHHH
Confidence 7788888888887 9999999999 43233334556666666665444 34899999999999999753
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.49 E-value=4.5e-15 Score=126.32 Aligned_cols=126 Identities=25% Similarity=0.376 Sum_probs=91.9
Q ss_pred HHHhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC
Q 016750 10 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG 89 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~ 89 (383)
.+...++|.+.....+.+++..+.||||||+++|......++..+|++++|+|++.+.. .++.+.+..+...+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~l~~~~~~~ 107 (178)
T 2lkc_A 35 EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVM-------PQTVEAINHAKAAN 107 (178)
T ss_dssp CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCC-------HHHHHHHHHHGGGS
T ss_pred cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHhCC
Confidence 33455778888888888899999999999999998777788889999999999988653 46667777776678
Q ss_pred CCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC---CCCceEEEcccccccccccccc
Q 016750 90 VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 90 i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+| +++|+||+|+... +.. ++.+ .+...+... ....+++++||++|.|++++.+
T Consensus 108 ~p-~ilv~nK~Dl~~~--~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 108 VP-IIVAINKMDKPEA--NPD---RVMQ----ELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp CC-EEEEEETTTSSCS--CHH---HHHH----HHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHH
T ss_pred CC-EEEEEECccCCcC--CHH---HHHH----HHHhcCcChhHcCCcccEEEEecCCCCCHHHHHH
Confidence 88 8999999999432 211 2222 222222110 0125899999999999998644
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.45 E-value=1.2e-13 Score=128.84 Aligned_cols=124 Identities=22% Similarity=0.227 Sum_probs=90.3
Q ss_pred HHhhcceeeccceeeeec-CcEEEEEeCCCCCCh----------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchH
Q 016750 11 ERIKGKTVEVGRAHFETE-TTRFTILDAPGHKSY----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~-~~~i~liDtPG~~~~----------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
....|+|.+.....+..+ +.+++||||||+.++ ...+..++..+|++++|+|++.+.. .++.
T Consensus 39 s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~-------~~~~ 111 (308)
T 3iev_A 39 SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR-------PRDE 111 (308)
T ss_dssp CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSC-------HHHH
T ss_pred CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------chhH
Confidence 345678888877788888 999999999999653 3566778899999999999998753 3555
Q ss_pred HH-HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 80 EH-VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 80 ~~-~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. +..+...++| +++|+||+|+.. + .....+..+.+. +.++. ..+++++||++|.|++++.+
T Consensus 112 ~~~~~~l~~~~~p-vilV~NK~Dl~~-~--~~~~~~~~~~l~---~~~~~----~~~i~~vSA~~g~gv~~L~~ 174 (308)
T 3iev_A 112 EIYQNFIKPLNKP-VIVVINKIDKIG-P--AKNVLPLIDEIH---KKHPE----LTEIVPISALKGANLDELVK 174 (308)
T ss_dssp HHHHHHTGGGCCC-EEEEEECGGGSS-S--GGGGHHHHHHHH---HHCTT----CCCEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHhcCCC-EEEEEECccCCC-C--HHHHHHHHHHHH---HhccC----CCeEEEEeCCCCCCHHHHHH
Confidence 55 6677777888 889999999931 2 222233333333 33321 24799999999999998643
No 37
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.43 E-value=4.8e-13 Score=118.25 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=86.2
Q ss_pred Hhhcceeeccceeee-ecCcEEEEEeCCCCCC-------------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCc
Q 016750 12 RIKGKTVEVGRAHFE-TETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQ 77 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~-~~~~~i~liDtPG~~~-------------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~ 77 (383)
...|+|.+.....+. .++..+.||||||+.+ +....+.....+|++++|+|+..+.. ..
T Consensus 60 ~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~ 132 (223)
T 4dhe_A 60 KTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-------EL 132 (223)
T ss_dssp CCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HH
T ss_pred CCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-------HH
Confidence 345778777766665 5678999999999743 22233334445899999999998653 35
Q ss_pred hHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc---CCCCCCCceEEEccccccccccccc
Q 016750 78 TREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS---GYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 78 ~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..+++..+...++| +++|+||+|+ .+ ........+++...+... +.. ...+++++||++|.|+.++.
T Consensus 133 ~~~~~~~l~~~~~p-~i~v~nK~Dl--~~--~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~SA~~g~gv~~l~ 202 (223)
T 4dhe_A 133 DRRMIEWFAPTGKP-IHSLLTKCDK--LT--RQESINALRATQKSLDAYRDAGYA--GKLTVQLFSALKRTGLDDAH 202 (223)
T ss_dssp HHHHHHHHGGGCCC-EEEEEECGGG--SC--HHHHHHHHHHHHHHHHHHHHHTCC--SCEEEEEEBTTTTBSHHHHH
T ss_pred HHHHHHHHHhcCCC-EEEEEecccc--CC--hhhHHHHHHHHHHHHHhhhhcccC--CCCeEEEeecCCCcCHHHHH
Confidence 56667777778888 8999999999 42 233334444444444432 100 14689999999999999953
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.40 E-value=9.7e-13 Score=122.07 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=84.3
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCC--------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~--------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.++|.+.....+..++.+++||||||+.+ |...+..+++.+|++++|+|++.+.. ..+...+..+
T Consensus 39 ~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~-------~~~~~i~~~l 111 (301)
T 1wf3_A 39 PQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT-------PEDELVARAL 111 (301)
T ss_dssp SCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC-------HHHHHHHHHH
T ss_pred CCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC-------hHHHHHHHHH
Confidence 35666655556677889999999999887 56677788999999999999988752 3455555667
Q ss_pred HHc--CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+.. ++| +|+++||+|+ .+. .. .+.+.+..+ .++ .+++|+||++|.|++++.+
T Consensus 112 ~~~~~~~p-~ilV~NK~Dl--~~~--~~--~~~~~~~~~---~~~-----~~~~~iSA~~g~gv~~l~~ 165 (301)
T 1wf3_A 112 KPLVGKVP-ILLVGNKLDA--AKY--PE--EAMKAYHEL---LPE-----AEPRMLSALDERQVAELKA 165 (301)
T ss_dssp GGGTTTSC-EEEEEECGGG--CSS--HH--HHHHHHHHT---STT-----SEEEECCTTCHHHHHHHHH
T ss_pred HhhcCCCC-EEEEEECccc--CCc--hH--HHHHHHHHh---cCc-----CcEEEEeCCCCCCHHHHHH
Confidence 666 788 8899999999 321 11 022222222 232 3799999999999998543
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.36 E-value=1.1e-12 Score=109.31 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=81.2
Q ss_pred HHHhhcceeeccceeeeecCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 10 EERIKGKTVEVGRAHFETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
.+...++|.+.....+..++..+.||||||+.+ +...+...++.+|++++|+|++.+.. .......
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~ 101 (161)
T 2dyk_A 29 VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT-------QADYEVA 101 (161)
T ss_dssp ---------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC-------HHHHHHH
T ss_pred ccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc-------HhHHHHH
Confidence 345567888888888888889999999999987 45556677889999999999998642 2344556
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..+...++| +++++||+|+ .+. + +++.++. .+++. +++++||++|.|++++.
T Consensus 102 ~~~~~~~~p-~ilv~nK~Dl--~~~-~-------~~~~~~~-~~~~~-----~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 102 EYLRRKGKP-VILVATKVDD--PKH-E-------LYLGPLY-GLGFG-----DPIPTSSEHARGLEELL 153 (161)
T ss_dssp HHHHHHTCC-EEEEEECCCS--GGG-G-------GGCGGGG-GGSSC-----SCEECBTTTTBSHHHHH
T ss_pred HHHHhcCCC-EEEEEECccc--ccc-h-------HhHHHHH-hCCCC-----CeEEEecccCCChHHHH
Confidence 667777888 8999999999 321 1 1122222 34432 68999999999999853
No 40
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.36 E-value=3.8e-12 Score=124.42 Aligned_cols=119 Identities=18% Similarity=0.312 Sum_probs=83.7
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCCC---------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~---------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
+...|+|.|.....+++++..+.+|||||++. +...+..+++.||++|+|+|+..+.. ..+.+.
T Consensus 30 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~-------~~d~~i 102 (439)
T 1mky_A 30 EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGIT-------KEDESL 102 (439)
T ss_dssp --------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCC-------HHHHHH
T ss_pred cCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHH
Confidence 45679999999999999999999999999765 24456678899999999999998763 344556
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHH-HHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 82 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM-TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 82 ~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..+++..++| +++|+||+|+ .+ .. ..++ .++. .+++. +++++||++|.|+.++.+
T Consensus 103 ~~~l~~~~~p-~ilv~NK~D~--~~----~~---~~~~~~~~~-~lg~~-----~~~~iSA~~g~gv~~L~~ 158 (439)
T 1mky_A 103 ADFLRKSTVD-TILVANKAEN--LR----EF---EREVKPELY-SLGFG-----EPIPVSAEHNINLDTMLE 158 (439)
T ss_dssp HHHHHHHTCC-EEEEEESCCS--HH----HH---HHHTHHHHG-GGSSC-----SCEECBTTTTBSHHHHHH
T ss_pred HHHHHHcCCC-EEEEEeCCCC--cc----cc---HHHHHHHHH-hcCCC-----CEEEEeccCCCCHHHHHH
Confidence 6677777888 8899999998 21 10 1122 2332 45543 589999999999999644
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.35 E-value=1.1e-12 Score=111.37 Aligned_cols=125 Identities=15% Similarity=0.047 Sum_probs=84.8
Q ss_pred CHHHHhhcceeeccceeeeecC---cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 8 NEEERIKGKTVEVGRAHFETET---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 8 ~~~E~~rG~Ti~~~~~~~~~~~---~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..++....++.+.....+.+++ ..+.||||||+++|...+...++.+|++++|+|++++.. ++ ....++..
T Consensus 31 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~ 104 (178)
T 2hxs_A 31 FGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---FE---NLEDWYTV 104 (178)
T ss_dssp TTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHH
T ss_pred CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHH
Confidence 3445555555566566666655 789999999999998888888999999999999987532 11 22334444
Q ss_pred HHHc-----CCCeEEEEEecCCCCCCC-ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 85 AKTL-----GVTKLLLVVNKMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 85 ~~~~-----~i~~~ivviNK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+... +.|.+++++||+|+.... .+. ++...+.+..+ ++++++||++|.|++++.
T Consensus 105 i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 164 (178)
T 2hxs_A 105 VKKVSEESETQPLVALVGNKIDLEHMRTIKP-------EKHLRFCQENG------FSSHFVSAKTGDSVFLCF 164 (178)
T ss_dssp HHHHHHHHTCCCEEEEEEECGGGGGGCSSCH-------HHHHHHHHHHT------CEEEEECTTTCTTHHHHH
T ss_pred HHHHhcccCCCCeEEEEEEccccccccccCH-------HHHHHHHHHcC------CcEEEEeCCCCCCHHHHH
Confidence 4332 566578899999993211 111 22333444443 479999999999999854
No 42
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.34 E-value=1.5e-12 Score=125.84 Aligned_cols=120 Identities=21% Similarity=0.203 Sum_probs=85.4
Q ss_pred HHHHhhcceeeccceeeeecCc-EEEEEeCCCCCCh-------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 9 EEERIKGKTVEVGRAHFETETT-RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 9 ~~E~~rG~Ti~~~~~~~~~~~~-~i~liDtPG~~~~-------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
..+..+|+|++.....+++.+. .++|||||||.+| ...+..+++.+|++|+|+|+ +.. .++.+
T Consensus 61 ~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~-------~~~~~ 131 (423)
T 3qq5_A 61 IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APT-------PYEDD 131 (423)
T ss_dssp ---------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCC-------HHHHH
T ss_pred ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CCh-------HHHHH
Confidence 4677899999999999998776 9999999999876 34467788899999999999 332 57888
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++..+...++| +|+|+||+|+..... . +....+.+.+ ..+++++||++|.|++++.+
T Consensus 132 ~l~~l~~~~~p-iIvV~NK~Dl~~~~~--~------~~~~~l~~~~------g~~v~~vSAktg~gI~eL~~ 188 (423)
T 3qq5_A 132 VVNLFKEMEIP-FVVVVNKIDVLGEKA--E------ELKGLYESRY------EAKVLLVSALQKKGFDDIGK 188 (423)
T ss_dssp HHHHHHHTTCC-EEEECCCCTTTTCCC--T------HHHHHSSCCT------TCCCCCCSSCCTTSTTTHHH
T ss_pred HHHHHHhcCCC-EEEEEeCcCCCCccH--H------HHHHHHHHHc------CCCEEEEECCCCCCHHHHHH
Confidence 88999999998 899999999954321 1 1122222222 34799999999999999543
No 43
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.34 E-value=3.2e-12 Score=110.29 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=75.3
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH----HHHHH-----cCCCeEEEEE
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKT-----LGVTKLLLVV 97 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~----~~~~~-----~~i~~~ivvi 97 (383)
.....+.||||||+++|......+++.+|++|+|+|++.+.. .+..+.+ .++.. .++| +++|+
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~-------~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~ 142 (198)
T 3t1o_A 71 GFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL-------RANAESMRNMRENLAEYGLTLDDVP-IVIQV 142 (198)
T ss_dssp SCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGH-------HHHHHHHHHHHHHHHHTTCCTTSSC-EEEEE
T ss_pred CCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchh-------hHhHHHHHHHHHHHHhhccccCCCC-EEEEE
Confidence 345679999999999999888899999999999999986532 1222222 33333 3677 89999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
||+|+... ...+++..+++..++ .+++++||++|.|++++.+
T Consensus 143 NK~Dl~~~--------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 143 NKRDLPDA--------LPVEMVRAVVDPEGK-----FPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp ECTTSTTC--------CCHHHHHHHHCTTCC-----SCEEECBGGGTBTHHHHHH
T ss_pred Echhcccc--------cCHHHHHHHHHhcCC-----ceEEEEecCCCcCHHHHHH
Confidence 99999432 112334455555543 2799999999999999643
No 44
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.33 E-value=2.4e-12 Score=111.19 Aligned_cols=129 Identities=21% Similarity=0.171 Sum_probs=82.7
Q ss_pred CCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+...++....++.+.....+..++ ..+.||||||+++|...+...++.+|++|+|+|++++.. ++ ....++.
T Consensus 49 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~~---~~~~~~~ 122 (192)
T 2il1_A 49 DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMK 122 (192)
T ss_dssp --------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHH
T ss_pred CCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHH
Confidence 333444555566666656666654 578999999999999888899999999999999987542 11 2233344
Q ss_pred HHHHc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+... ++| +++|+||+|+... .+. ..++...+.+.+. ..+++++||++|.|++++.+
T Consensus 123 ~i~~~~~~~~p-iilV~NK~Dl~~~--~~v----~~~~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 123 MIDKYASEDAE-LLLVGNKLDCETD--REI----TRQQGEKFAQQIT-----GMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp HHHHHSCTTCE-EEEEEECGGGGGG--CCS----CHHHHHHHHHTST-----TCEEEECBTTTTBSHHHHHH
T ss_pred HHHHhcCCCCc-EEEEEECcccccc--ccc----CHHHHHHHHHhcC-----CCeEEEEeCCCCCCHHHHHH
Confidence 44443 566 8999999998321 110 1122333444332 35899999999999998543
No 45
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.33 E-value=7e-13 Score=112.92 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=82.5
Q ss_pred CHHHHhhcceeeccceeeeec--CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 8 NEEERIKGKTVEVGRAHFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 8 ~~~E~~rG~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
..++....++.+.....+..+ ...+.||||||+++|...+...++.+|++++|+|++.+.. + ....+++..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~ 110 (181)
T 2efe_B 37 FVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---F---ERAKKWVQEL 110 (181)
T ss_dssp CTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHH
T ss_pred CCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHH
Confidence 333444444444444444443 4588999999999998888888999999999999987532 1 1234444445
Q ss_pred HHc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 86 KTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 86 ~~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
... ++| +++++||+|+.... +. ..+++..+.+..+ ++++++||++|.|+.++.
T Consensus 111 ~~~~~~~~p-~i~v~nK~Dl~~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 111 QAQGNPNMV-MALAGNKSDLLDAR--KV----TAEDAQTYAQENG------LFFMETSAKTATNVKEIF 166 (181)
T ss_dssp HHHSCTTCE-EEEEEECTTCTTTC--CS----CHHHHHHHHHHTT------CEEEECCSSSCTTHHHHH
T ss_pred HHhcCCCCc-EEEEEECCcccccc--cC----CHHHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 443 566 88999999994211 10 1123334444443 479999999999999853
No 46
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.32 E-value=5e-12 Score=109.38 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=82.2
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc-------
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------- 88 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~------- 88 (383)
-|+......++..+..+.||||||+++|...+...++.+|++|+|+|++++.. | ....+.+..+...
T Consensus 49 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~~ 122 (199)
T 4bas_A 49 ATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR---L---CVVKSEIQAMLKHEDIRREL 122 (199)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTSHHHHSBC
T ss_pred cccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH---H---HHHHHHHHHHHhChhhhhcc
Confidence 34555555667788999999999999998888888999999999999997541 1 1223333333322
Q ss_pred ----CCCeEEEEEecCCCCCCCccHHHHHHHHHHHH--HHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 89 ----GVTKLLLVVNKMDDHTVNWSKERYDEIESKMT--PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 89 ----~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++| +|+|+||+|+.... . .+++.+.+. .+.+.. .++++++||++|.|++++.+
T Consensus 123 ~~~~~~p-iilv~NK~Dl~~~~-~---~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 181 (199)
T 4bas_A 123 PGGGRVP-FLFFANKMDAAGAK-T---AAELVEILDLTTLMGDH------PFVIFASNGLKGTGVHEGFS 181 (199)
T ss_dssp TTSCBCC-EEEEEECTTSTTCC-C---HHHHHHHHTHHHHHTTS------CEEEEECBTTTTBTHHHHHH
T ss_pred cccCCCC-EEEEEECcCCCCCC-C---HHHHHHHhcchhhccCC------eeEEEEeeCCCccCHHHHHH
Confidence 777 89999999994321 1 122333222 111222 46899999999999999644
No 47
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.32 E-value=8.1e-13 Score=119.80 Aligned_cols=116 Identities=22% Similarity=0.190 Sum_probs=83.4
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHHH----------HHHhh--hhcCEEEEEEECCCCccccccccCCchHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPN----------MISGA--SQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~----------~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
..|+|++.....+.+++..+.||||||+.++... ....+ ..+|++|+|+|++.. .....
T Consensus 31 ~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~~ 101 (256)
T 3iby_A 31 WPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHLY 101 (256)
T ss_dssp CTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHHH
T ss_pred CCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHHH
Confidence 3589999999999999999999999999877531 22333 689999999999873 24555
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
...++..+++| +++|+||+|+ .+ . ..+...+..+.+.++ ++++++||++|.|++++.
T Consensus 102 l~~~l~~~~~p-vilv~NK~Dl--~~---~--~~~~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 102 LTSQLFELGKP-VVVALNMMDI--AE---H--RGISIDTEKLESLLG------CSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp HHHHHTTSCSC-EEEEEECHHH--HH---H--TTCEECHHHHHHHHC------SCEEECBGGGTBSHHHHH
T ss_pred HHHHHHHcCCC-EEEEEEChhc--CC---c--CCcHHHHHHHHHHcC------CCEEEEECCCCCCHHHHH
Confidence 66677778998 8999999998 31 0 001111222233334 479999999999999853
No 48
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.32 E-value=3.8e-12 Score=110.92 Aligned_cols=128 Identities=14% Similarity=0.083 Sum_probs=81.0
Q ss_pred CCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 7 TNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 7 ~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
...++....++.+.....+..++ ..+.||||||+++|...+...++.+|++|+|+|+++... ++ ....++..
T Consensus 53 ~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~ 126 (201)
T 2hup_A 53 AFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---FL---SVPHWIED 126 (201)
T ss_dssp CC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHH---HH---THHHHHHH
T ss_pred CCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHH
Confidence 33344444444455455566655 588999999999999888889999999999999987532 11 23344444
Q ss_pred HHH---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 85 AKT---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 85 ~~~---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+.. .++| +++|+||+|+... .+. ..+++..+++..++. +++++||++|.|++++.+
T Consensus 127 i~~~~~~~~p-iilv~NK~Dl~~~--~~v----~~~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 127 VRKYAGSNIV-QLLIGNKSDLSEL--REV----SLAEAQSLAEHYDIL-----CAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp HHHHSCTTCE-EEEEEECTTCGGG--CCS----CHHHHHHHHHHTTCS-----EEEECBTTTTBSHHHHHH
T ss_pred HHHhcCCCCC-EEEEEECCccccc--ccc----CHHHHHHHHHHcCCC-----EEEEEeCCCCCCHHHHHH
Confidence 444 3466 8899999999321 000 112334455555532 799999999999998543
No 49
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.31 E-value=2.4e-12 Score=109.95 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=71.9
Q ss_pred CCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+....+...+++.+.....+..++ ..+.||||||+++|...+...++.+|++|+|+|++.... + ....+++.
T Consensus 31 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~ 104 (183)
T 2fu5_C 31 DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---F---DNIRNWIR 104 (183)
T ss_dssp -----CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHH---H---HHHHHHHH
T ss_pred CCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHH
Confidence 334445566677776666666665 688999999999998877788899999999999987532 1 12334444
Q ss_pred HHHHc---CCCeEEEEEecCCCCCCC-ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTL---GVTKLLLVVNKMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~---~i~~~ivviNK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+... ++| +++|+||+|+.... .+. +++..+.+..+ ++++++||++|.|++++.+
T Consensus 105 ~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 105 NIEEHASADVE-KMILGNKCDVNDKRQVSK-------ERGEKLALDYG------IKFMETSAKANINVENAFF 163 (183)
T ss_dssp HHHHHSCTTCE-EEEEEEC--CCSCCCSCH-------HHHHHHHHHHT------CEEEECCC---CCHHHHHH
T ss_pred HHHHhcCCCCC-EEEEEECccCCccCcCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 44443 566 89999999994311 111 22333444444 4799999999999998644
No 50
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=5.8e-12 Score=108.16 Aligned_cols=119 Identities=20% Similarity=0.254 Sum_probs=76.9
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~ 92 (383)
|++.....+.+++..+.||||||+++|...+...++.+|++++|+|++++.. + ....+.+..+.. .++|
T Consensus 47 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p- 119 (187)
T 1zj6_A 47 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG- 119 (187)
T ss_dssp CSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTSGGGTTCE-
T ss_pred CCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhchhhCCCe-
Confidence 4555556677788999999999999998888888999999999999987631 1 123333333332 3666
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++|+||+|+.... . .+++.+ .+....+. ...++++++||++|.|++++.
T Consensus 120 iilv~NK~Dl~~~~-~---~~~i~~----~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 120 LLIFANKQDVKECM-T---VAEISQ----FLKLTSIK-DHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EEEEEECTTSTTCC-C---HHHHHH----HHTGGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECCCCcCCC-C---HHHHHH----HhChhhhc-CCCcEEEEccCCCCcCHHHHH
Confidence 89999999994311 1 122222 22211111 124689999999999999854
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=3.4e-12 Score=111.72 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=83.9
Q ss_pred HHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH
Q 016750 10 EERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT 87 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~ 87 (383)
.+...+++.+.....+..++ ..+.||||||+++|...+...+..+|++++|+|++.+.. + .....++..+..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~ 120 (213)
T 3cph_A 47 PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---F---TNIKQWFKTVNE 120 (213)
T ss_dssp CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHH
T ss_pred cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHH
Confidence 34445566666556666666 678999999999998878888999999999999987532 1 123344444444
Q ss_pred c---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 88 L---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 88 ~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. ++| +++|+||+|+....... ++...+.+..+ ++++++||++|.|++++.+
T Consensus 121 ~~~~~~p-iilv~nK~Dl~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 121 HANDEAQ-LLLVGNKSDMETRVVTA-------DQGEALAKELG------IPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp HTTTCSE-EEEEEECTTCSSCCSCH-------HHHHHHHHHHT------CCEEECBTTTTBSSHHHHH
T ss_pred hcCCCCC-EEEEEECCCCcccccCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 3 566 89999999983222221 12223334444 3699999999999999654
No 52
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.31 E-value=2.6e-12 Score=110.94 Aligned_cols=128 Identities=23% Similarity=0.234 Sum_probs=88.8
Q ss_pred CCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+...++...+++.+.....+..++ ..+.||||||+++|...+...++.+|++++|+|+++... ++ ....++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~ 112 (196)
T 3tkl_A 39 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FN---NVKQWLQ 112 (196)
T ss_dssp SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHH
T ss_pred CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH---HH---HHHHHHH
Confidence 344455566777777777777766 578999999999998888889999999999999987532 11 2334444
Q ss_pred HHHHc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+... ++| +++|+||+|+.... .... ++...+....+ ++++++||++|.|++++.+
T Consensus 113 ~i~~~~~~~~p-~ilv~nK~Dl~~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 113 EIDRYASENVN-KLLVGNKCDLTTKK--VVDY----TTAKEFADSLG------IPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp HHHHHSCTTCE-EEEEEECTTCTTTC--CSCH----HHHHHHHHHTT------CCEEEECTTTCTTHHHHHH
T ss_pred HHHHhcCCCCC-EEEEEECccccccc--ccCH----HHHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Confidence 44443 566 88999999994321 1111 22333444444 4799999999999999654
No 53
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.30 E-value=1.4e-12 Score=119.39 Aligned_cols=116 Identities=21% Similarity=0.304 Sum_probs=83.5
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHH---------HHH---HhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVP---------NMI---SGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~---------~~~---~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
..|+|++.....+++.+..+.||||||+.++.. .+. .....+|++++|+|++.. .....
T Consensus 33 ~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~~ 103 (274)
T 3i8s_A 33 WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNLY 103 (274)
T ss_dssp CTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHHH
T ss_pred CCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHHH
Confidence 458999999999999999999999999987651 111 123689999999999873 24556
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
....+...++| +++|+||+|+ .+ .. .....+..+.+.++ ++++++||++|.|++++.
T Consensus 104 ~~~~l~~~~~p-~ivv~NK~Dl--~~--~~---~~~~~~~~l~~~lg------~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 104 LTLQLLELGIP-CIVALNMLDI--AE--KQ---NIRIEIDALSARLG------CPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HHHHHHHHTCC-EEEEEECHHH--HH--HT---TEEECHHHHHHHHT------SCEEECCCGGGHHHHHHH
T ss_pred HHHHHHhcCCC-EEEEEECccc--hh--hh---hHHHHHHHHHHhcC------CCEEEEEcCCCCCHHHHH
Confidence 66777788998 8999999998 31 00 00011222333333 479999999999999854
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.30 E-value=4e-12 Score=106.85 Aligned_cols=123 Identities=17% Similarity=0.127 Sum_probs=79.0
Q ss_pred HHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH
Q 016750 10 EERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT 87 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~ 87 (383)
.+...+++.+.....+..++ ..+.||||||+++|...+...++.+|++++|+|++.+.. + .....++..+..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~ 103 (170)
T 1g16_A 30 PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---F---TNIKQWFKTVNE 103 (170)
T ss_dssp C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---H---HTHHHHHHHHHH
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHH
Confidence 34445555555555555554 578999999999988878888999999999999987532 1 123344444444
Q ss_pred c---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 88 L---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 88 ~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. ++| +++++||+|+....... ++...+.+..+ ++++++||++|.|++++.+
T Consensus 104 ~~~~~~p-iilv~nK~Dl~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 104 HANDEAQ-LLLVGNKSDMETRVVTA-------DQGEALAKELG------IPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp HSCTTCE-EEEEEECTTCTTCCSCH-------HHHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred hcCCCCc-EEEEEECccCCcCccCH-------HHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 3 566 89999999983322221 12233344444 3699999999999998543
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=3.2e-12 Score=110.37 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=80.7
Q ss_pred cceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCC
Q 016750 15 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVT 91 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~ 91 (383)
|.|.......+......+.||||||+++|...+...++.+|++++|+|++.... + .....++..+... ++|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p 130 (192)
T 2fg5_A 57 GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---F---YTLKKWVKELKEHGPENIV 130 (192)
T ss_dssp SEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---H---HHHHHHHHHHHHHSCTTCE
T ss_pred ceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCc
Confidence 444444444444456789999999999998888889999999999999987542 1 1233444444443 566
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++|+||+|+. +..+. ..+++..+++..+ .+++++||++|.|++++.
T Consensus 131 -iiiv~NK~Dl~--~~~~v----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 131 -MAIAGNKCDLS--DIREV----PLKDAKEYAESIG------AIVVETSAKNAINIEELF 177 (192)
T ss_dssp -EEEEEECGGGG--GGCCS----CHHHHHHHHHTTT------CEEEECBTTTTBSHHHHH
T ss_pred -EEEEEECcccc--ccccc----CHHHHHHHHHHcC------CEEEEEeCCCCcCHHHHH
Confidence 89999999983 21110 1223444555444 479999999999999853
No 56
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.30 E-value=2.7e-12 Score=119.14 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=84.5
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCC-C--------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHK-S--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~-~--------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
.++|.+.....+.+++.+++|+||||+. + |...+..++..+|++++|+|++. .. .+++..+..
T Consensus 40 ~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~-------~~~~~i~~~ 111 (301)
T 1ega_A 40 AQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT-------PDDEMVLNK 111 (301)
T ss_dssp SSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC-------HHHHHHHHH
T ss_pred CCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-------HHHHHHHHH
Confidence 3566655555677788999999999997 3 33334567788999999999976 42 566677777
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+...+.| +|+++||+|+.. .... +.+.+..+.+.+++. .++|+||++|.|+.++.+
T Consensus 112 l~~~~~P-~ilvlNK~D~~~---~~~~---~~~~l~~l~~~~~~~-----~~i~iSA~~g~~v~~l~~ 167 (301)
T 1ega_A 112 LREGKAP-VILAVNKVDNVQ---EKAD---LLPHLQFLASQMNFL-----DIVPISAETGLNVDTIAA 167 (301)
T ss_dssp HHSSSSC-EEEEEESTTTCC---CHHH---HHHHHHHHHTTSCCS-----EEEECCTTTTTTHHHHHH
T ss_pred HHhcCCC-EEEEEECcccCc---cHHH---HHHHHHHHHHhcCcC-----ceEEEECCCCCCHHHHHH
Confidence 7766888 788999999932 1222 333344444444542 799999999999998543
No 57
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=110.49 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=85.8
Q ss_pred CCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 6 DTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 6 D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
+....+...++|.+.....+..++ ..+.||||||++++...+...++.+|++++|+|++++.. + .....++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~ 105 (181)
T 3tw8_B 32 NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES---F---VNVKRWLH 105 (181)
T ss_dssp CC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHH
T ss_pred CCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHH
Confidence 444555667777777777777766 678999999999998888888999999999999987542 1 12223333
Q ss_pred HHHHc--CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+... ++| +++|+||+|+.... .. ...+...+....+ .+++++||++|.|++++.+
T Consensus 106 ~~~~~~~~~p-~ilv~nK~Dl~~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 106 EINQNCDDVC-RILVGNKNDDPERK--VV----ETEDAYKFAGQMG------IQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp HHHHHCTTSE-EEEEEECTTCGGGC--CS----CHHHHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred HHHHhCCCCC-EEEEEECCCCchhc--cc----CHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 33333 366 88999999983211 00 0122233344443 3699999999999998643
No 58
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.29 E-value=1.8e-11 Score=102.27 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=78.6
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~ 92 (383)
|++.....++.++..+.+|||||+++|...+...++.+|++++|+|++++.. ++ ...+.+..+.. .++|
T Consensus 31 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p- 103 (164)
T 1r8s_A 31 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VN---EAREELMRMLAEDELRDAV- 103 (164)
T ss_dssp CSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTCE-
T ss_pred cCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHhchhhcCCe-
Confidence 4444455667788999999999999998888888999999999999987531 11 22233333322 2566
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++++||+|+.... . .+++.+ .+...... ...++++++||++|.|++++.
T Consensus 104 iilv~nK~Dl~~~~-~---~~~~~~----~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 104 LLVFANKQDLPNAM-N---AAEITD----KLGLHSLR-HRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp EEEEEECTTSTTCC-C---HHHHHH----HTTGGGCS-SCCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECcCCcCCC-C---HHHHHH----HhCccccc-CccEEEEEcccCCCcCHHHHH
Confidence 89999999994321 1 122222 22111111 124579999999999999853
No 59
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.29 E-value=6.9e-12 Score=107.94 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=82.5
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH------
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------ 87 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~------ 87 (383)
...|++.....+.+++..+.||||||+++|...+...++.+|++++|+|+++... + ....+.+..+..
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~ 124 (190)
T 2h57_A 51 ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR---M---VVAKEELDTLLNHPDIKH 124 (190)
T ss_dssp CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHSTTTTT
T ss_pred cCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhcc
Confidence 3456666666677788999999999999998888888999999999999987531 1 122333433333
Q ss_pred cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 88 LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 88 ~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.++| +++|+||+|+.... . .+++ .+.+....+. ...++++++||++|.|++++.
T Consensus 125 ~~~p-iilv~nK~Dl~~~~-~---~~~~----~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 125 RRIP-ILFFANKMDLRDAV-T---SVKV----SQLLCLENIK-DKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp SCCC-EEEEEECTTSTTCC-C---HHHH----HHHHTGGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred CCCe-EEEEEeCcCcccCC-C---HHHH----HHHhChhhcc-CCceEEEEccCCCCcCHHHHH
Confidence 3677 89999999994311 1 1222 2222211111 114689999999999999854
No 60
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.28 E-value=5.8e-12 Score=106.80 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=73.6
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCeEEEEEecCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~~ivviNK~D~~~ 104 (383)
....+.||||||+++|...+...++.+|++++|+|++.+.. + .....++..+.. .++| +++++||+|+.
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~- 133 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---Y---NHLSSWLTDARNLTNPNTV-IILIGNKADLE- 133 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG-
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECcccc-
Confidence 34678999999999998888899999999999999987542 1 122333333433 3566 89999999983
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+..+. ..+++..+++..+ ++++++||++|.|++++.
T Consensus 134 -~~~~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 134 -AQRDV----TYEEAKQFAEENG------LLFLEASAKTGENVEDAF 169 (179)
T ss_dssp -GGCCS----CHHHHHHHHHHTT------CEEEECCTTTCTTHHHHH
T ss_pred -ccccc----CHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 21111 1123344445444 479999999999999853
No 61
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.28 E-value=3.6e-12 Score=109.64 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=75.3
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEEecCCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 103 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivviNK~D~~ 103 (383)
.....+.||||||+++|...+...++.+|++++|+|++.+.. + ....+++..+... ++| +++|+||+|+
T Consensus 68 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl- 139 (189)
T 2gf9_A 68 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES---F---AAVQDWATQIKTYSWDNAQ-VILVGNKCDL- 139 (189)
T ss_dssp TEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTC-
T ss_pred CeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccc-
Confidence 345688999999999998888888999999999999987532 1 1334455555553 566 8999999998
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+.... ..+++..+.+..+ ++++++||++|.|++++.+
T Consensus 140 -~~~~~~----~~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 140 -EDERVV----PAEDGRRLADDLG------FEFFEASAKENINVKQVFE 177 (189)
T ss_dssp -GGGCCS----CHHHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred -ccccCC----CHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 321100 0122334444444 3799999999999998643
No 62
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.28 E-value=5.5e-12 Score=106.94 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=82.9
Q ss_pred CCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 7 TNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 7 ~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
....+....++++.....+..++ ..+.||||||+++|...+...+..+|++++|+|++.... + .....++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~ 111 (179)
T 2y8e_A 38 SFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS---F---HQTSKWIDD 111 (179)
T ss_dssp CCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHH
T ss_pred CCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHH
Confidence 33344455566666556666655 578999999999998888888999999999999987532 1 123333333
Q ss_pred HHH---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 85 AKT---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 85 ~~~---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+.. .++| +++|+||+|+... .+... ++...+.+..+ .+++++||++|.|++++
T Consensus 112 i~~~~~~~~p-iilv~nK~Dl~~~--~~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 112 VRTERGSDVI-IMLVGNKTDLSDK--RQVST----EEGERKAKELN------VMFIETSAKAGYNVKQL 167 (179)
T ss_dssp HHHHHTTSSE-EEEEEECGGGGGG--CCSCH----HHHHHHHHHHT------CEEEEEBTTTTBSHHHH
T ss_pred HHHhcCCCCc-EEEEEECCccccc--CcCCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHH
Confidence 332 3666 8899999998321 11111 12223333333 47999999999999984
No 63
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.27 E-value=1.9e-11 Score=103.48 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=81.3
Q ss_pred CHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 8 NEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 8 ~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
...+....++.+.....+..++ ..+.||||||+++|...+...++.+|++++|+|++.+.. ++ ....++..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~ 105 (177)
T 1wms_A 32 FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS---FQ---NLSNWKKEF 105 (177)
T ss_dssp CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHH
T ss_pred CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHH
Confidence 3344455555665555666655 488999999999999888888999999999999987542 11 222233333
Q ss_pred HH-------cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 86 KT-------LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 86 ~~-------~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.. .++| +++++||+|+....... +++..+.+... ..+++++||++|.|++++.
T Consensus 106 ~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~-------~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~ 165 (177)
T 1wms_A 106 IYYADVKEPESFP-FVILGNKIDISERQVST-------EEAQAWCRDNG-----DYPYFETSAKDATNVAAAF 165 (177)
T ss_dssp HHHHTCSCTTTSC-EEEEEECTTCSSCSSCH-------HHHHHHHHHTT-----CCCEEECCTTTCTTHHHHH
T ss_pred HHHccccccCCCc-EEEEEECCcccccccCH-------HHHHHHHHhcC-----CceEEEEeCCCCCCHHHHH
Confidence 22 4667 88999999984221111 22333333222 3579999999999999854
No 64
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.27 E-value=1.7e-11 Score=106.25 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=81.5
Q ss_pred cCCCHHHHhhcceeeccceeee---ecCcEEEEEeCCCCCChHHHH---HHhhhhcCEEEEEEECCCCccccccccCCch
Q 016750 5 MDTNEEERIKGKTVEVGRAHFE---TETTRFTILDAPGHKSYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQT 78 (383)
Q Consensus 5 ~D~~~~E~~rG~Ti~~~~~~~~---~~~~~i~liDtPG~~~~~~~~---~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~ 78 (383)
++....+...|.+.......+. .....+.||||||+++|...+ ...++.+|++|+|+|+++..+ ...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~ 113 (196)
T 3llu_A 41 FHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM-------EAL 113 (196)
T ss_dssp HSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCH-------HHH
T ss_pred HhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchH-------HHH
Confidence 3344444444444444444433 345789999999999997776 688899999999999998632 122
Q ss_pred HHHHHHHHH-----cCCCeEEEEEecCCCCCCCcc--HHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 79 REHVMLAKT-----LGVTKLLLVVNKMDDHTVNWS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 79 ~~~~~~~~~-----~~i~~~ivviNK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.....++.. .++| +++|.||+|+ .+.. ......+..+....+...... ...++++++||++ .|+.++.
T Consensus 114 ~~~~~~l~~~~~~~~~~p-iilv~nK~Dl--~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~e~Sa~~-~~v~~~f 188 (196)
T 3llu_A 114 TRLHITVSKAYKVNPDMN-FEVFIHKVDG--LSDDHKIETQRDIHQRANDDLADAGLE-KLHLSFYLTSIYD-HSIFEAF 188 (196)
T ss_dssp HHHHHHHHHHHHHCTTCE-EEEEEECGGG--SCHHHHHHHHHHHHHHHHHHHHHTTCT-TSCEEEEEECTTS-THHHHHH
T ss_pred HHHHHHHHHHHhcCCCCc-EEEEEecccc--CchhhhhHHHhHHHHHHHHHHHHhhhh-cCCcceEEEEech-hhHHHHH
Confidence 222233333 2666 8999999998 4311 111222322222223222111 1146899999999 9999853
No 65
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.27 E-value=2.7e-12 Score=125.34 Aligned_cols=117 Identities=22% Similarity=0.331 Sum_probs=76.9
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCC--------ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHK--------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~--------~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+...|+|+|..+..+++++..+.+|||||+. .+...+..++..||++|+|+|+..+.. ..+.+..
T Consensus 32 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~-------~~d~~~~ 104 (436)
T 2hjg_A 32 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVA 104 (436)
T ss_dssp ---------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHH
T ss_pred cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHH
Confidence 4456999999999999999999999999986 456667778899999999999998863 3455666
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..++..++| +++|+||+|+... + ..+.++. .+++. +++++||.+|.|+.++.
T Consensus 105 ~~l~~~~~p-vilv~NK~D~~~~-----~-----~~~~~~~-~lg~~-----~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 105 KILYRTKKP-VVLAVNKLDNTEM-----R-----ANIYDFY-SLGFG-----EPYPISGTHGLGLGDLL 156 (436)
T ss_dssp HHHTTCCSC-EEEEEECCCC---------------CCCSSG-GGSSC-----CCEECBTTTTBTHHHHH
T ss_pred HHHHHcCCC-EEEEEECccCccc-----h-----hhHHHHH-HcCCC-----CeEEEeCcCCCChHHHH
Confidence 667777888 8999999998321 0 0111122 33432 68999999999999953
No 66
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.27 E-value=1.4e-11 Score=106.21 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=76.2
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCC----------CCChHHHHHHhhhhc---CEEEEEEECCCCccccccccCCchH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPG----------HKSYVPNMISGASQA---DIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG----------~~~~~~~~~~~~~~a---d~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
..|.|.+.....+ +..+.|||||| ++.|...+...++.+ |++++|+|++.+.. ....
T Consensus 55 ~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~ 124 (195)
T 1svi_A 55 KPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS-------NDDV 124 (195)
T ss_dssp -----CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHH
T ss_pred CCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC-------HHHH
Confidence 3456665544333 34799999999 444444444445555 99999999988652 2444
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+.+.++...++| +++|+||+|+ .+ +.......+++.+.+... ...+++++||++|.|+.++.
T Consensus 125 ~~~~~~~~~~~p-~i~v~nK~Dl--~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l~ 186 (195)
T 1svi_A 125 QMYEFLKYYGIP-VIVIATKADK--IP--KGKWDKHAKVVRQTLNID-----PEDELILFSSETKKGKDEAW 186 (195)
T ss_dssp HHHHHHHHTTCC-EEEEEECGGG--SC--GGGHHHHHHHHHHHHTCC-----TTSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHcCCC-EEEEEECccc--CC--hHHHHHHHHHHHHHHccc-----CCCceEEEEccCCCCHHHHH
Confidence 556777778888 8999999999 33 122333444454434321 14589999999999999853
No 67
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.26 E-value=1.8e-11 Score=105.33 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=76.0
Q ss_pred CcEEEEEeCCCC----------CChHHH---HHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEE
Q 016750 29 TTRFTILDAPGH----------KSYVPN---MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 95 (383)
Q Consensus 29 ~~~i~liDtPG~----------~~~~~~---~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~iv 95 (383)
+.++.+|||||. +.|... .......+|++++|+|+..+.. ......+.++...++| +++
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-------DSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EEE
Confidence 567899999993 333333 3334445699999999987642 3455666788888988 899
Q ss_pred EEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 96 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 96 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
|+||+|+ .+ +.......+++...+...+ ..+++++||++|.|++++.
T Consensus 139 v~nK~Dl--~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 185 (195)
T 3pqc_A 139 VLTKMDK--VK--MSERAKKLEEHRKVFSKYG-----EYTIIPTSSVTGEGISELL 185 (195)
T ss_dssp EEECGGG--SC--GGGHHHHHHHHHHHHHSSC-----CSCEEECCTTTCTTHHHHH
T ss_pred EEEChhc--CC--hHHHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHHH
Confidence 9999999 32 2334555666777776544 3589999999999999853
No 68
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.26 E-value=4.6e-12 Score=114.93 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=83.6
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHH-----HH-HHhh--hhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVP-----NM-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~-----~~-~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..|+|++.....+..++..+.||||||+..|.. .+ ...+ ..+|++++|+|++... .....+..
T Consensus 35 ~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---------~~~~~~~~ 105 (258)
T 3a1s_A 35 WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---------QSLYLLLE 105 (258)
T ss_dssp CTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---------HHHHHHHH
T ss_pred CCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---------hHHHHHHH
Confidence 358999998888988899999999999987743 11 2223 4799999999998742 34445566
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+...++| +++++||+|+ .+ .+ .+......+.+.++ ++++++||++|.|+.++.+
T Consensus 106 l~~~~~p-vilv~NK~Dl--~~---~~--~i~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 106 ILEMEKK-VILAMTAIDE--AK---KT--GMKIDRYELQKHLG------IPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp HHTTTCC-EEEEEECHHH--HH---HT--TCCBCHHHHHHHHC------SCEEECCTTTCTTHHHHHH
T ss_pred HHhcCCC-EEEEEECcCC--CC---cc--chHHHHHHHHHHcC------CCEEEEEeeCCcCHHHHHH
Confidence 6777998 8999999998 21 00 11111233344444 4799999999999998643
No 69
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.26 E-value=1.3e-11 Score=107.14 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=77.2
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCC
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVT 91 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~ 91 (383)
.|+......+.+++..+.+|||||+++|...+...++.+|++++|+|+++... |+ .....+..+.. .++|
T Consensus 55 ~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p 128 (198)
T 1f6b_A 55 PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER---LL---ESKEELDSLMTDETIANVP 128 (198)
T ss_dssp CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTSC
T ss_pred CCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHhCcccCCCc
Confidence 45556667778888999999999999988777778899999999999987531 11 22333333322 3677
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcC---------CCC--CCCceEEEcccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG---------YNV--KKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++|+||+|+... .+. ++ +.+.+.... +.. ....+++++||++|.|++++
T Consensus 129 -iilv~NK~Dl~~~-~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 189 (198)
T 1f6b_A 129 -ILILGNKIDRPEA-ISE---ER----LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189 (198)
T ss_dssp -EEEEEECTTSTTC-CCH---HH----HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred -EEEEEECCCcccc-CCH---HH----HHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence 8999999999431 111 22 333333211 100 12468999999999999984
No 70
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.26 E-value=1.6e-11 Score=120.08 Aligned_cols=125 Identities=22% Similarity=0.280 Sum_probs=84.1
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHH------------HHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVP------------NMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~------------~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
..|+|.+.....+.+++..+.+|||||++++.. ....+++.+|++++|+|+..+.. .+...
T Consensus 211 ~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~-------~~~~~ 283 (439)
T 1mky_A 211 IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT-------RQDQR 283 (439)
T ss_dssp CC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC-------HHHHH
T ss_pred CCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHH
Confidence 348899988888999999999999999854322 23457789999999999998753 34555
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 81 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 81 ~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....+...++| +++++||+|+ .+......++..+.+...+...+ ..+++++||++|.|+.++.+
T Consensus 284 i~~~l~~~~~~-~ilv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 284 MAGLMERRGRA-SVVVFNKWDL--VVHREKRYDEFTKLFREKLYFID-----YSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp HHHHHHHTTCE-EEEEEECGGG--STTGGGCHHHHHHHHHHHCGGGT-----TSCEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHcCCC-EEEEEECccC--CCchhhHHHHHHHHHHHHhccCC-----CCcEEEEECCCCCCHHHHHH
Confidence 66677778887 8999999998 43122123444445544444443 34899999999999998754
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.26 E-value=2.8e-11 Score=105.02 Aligned_cols=111 Identities=22% Similarity=0.146 Sum_probs=72.3
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCeEEEEEecCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~~ivviNK~D~~~ 104 (383)
....+.||||||+++|...+...++.+|++|+|+|++.+.. + .....++..+.. .++| +++|+||+|+..
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 147 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---F---LNIREWVDMIEDAAHETVP-IMLVGNKADIRD 147 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHC---CC-EEEEEECGGGHH
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 34678999999999999988999999999999999987542 1 123334444443 3677 899999999821
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
....+.......++...+.+..+ ++++++||++|.|++++.
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~SA~~g~gv~el~ 188 (199)
T 2p5s_A 148 TAATEGQKCVPGHFGEKLAMTYG------ALFCETSAKDGSNIVEAV 188 (199)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHT------CEEEECCTTTCTTHHHHH
T ss_pred ccccccccccCHHHHHHHHHHcC------CeEEEeeCCCCCCHHHHH
Confidence 00000000001122333444443 479999999999999853
No 72
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.26 E-value=1.3e-11 Score=105.37 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=79.0
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~ 92 (383)
|+......+.+++..+.||||||+++|...+...++.+|++++|+|+++... + ....+.+..+.. .++|
T Consensus 52 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p- 124 (181)
T 2h17_A 52 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG- 124 (181)
T ss_dssp CSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhCCCe-
Confidence 4444455667788999999999999998888888999999999999987531 1 123333433332 4666
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++++||+|+... .. .++ +.+.+....+. ...++++++||++|.|++++
T Consensus 125 iilv~NK~Dl~~~-~~---~~~----i~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 125 LLIFANKQDVKEC-MT---VAE----ISQFLKLTSIK-DHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp EEEEEECTTSTTC-CC---HHH----HHHHTTGGGCC-SSCEEEEECBTTTTBTHHHH
T ss_pred EEEEEECCCcccC-CC---HHH----HHHHhCccccc-CCceEEEEccCCCCcCHHHH
Confidence 8999999999431 11 112 22222111111 12458999999999999984
No 73
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.26 E-value=6.5e-12 Score=105.46 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=73.5
Q ss_pred eeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEEecC
Q 016750 24 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKM 100 (383)
Q Consensus 24 ~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivviNK~ 100 (383)
.+...+..+.||||||+++|...+...++.+|++++|+|++.+.. + .....++..+... ++| ++++.||+
T Consensus 49 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iilv~nK~ 121 (170)
T 1r2q_A 49 CLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES---F---ARAKNWVKELQRQASPNIV-IALSGNKA 121 (170)
T ss_dssp EETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred EECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 333346789999999999998888889999999999999987532 1 1233344444433 455 78889999
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 101 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 101 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|+.... +.. .++...+....+ .+++++||++|.|++++
T Consensus 122 Dl~~~~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 122 DLANKR--AVD----FQEAQSYADDNS------LLFMETSAKTSMNVNEI 159 (170)
T ss_dssp GGGGGC--CSC----HHHHHHHHHHTT------CEEEECCTTTCTTHHHH
T ss_pred cCcccc--ccC----HHHHHHHHHHcC------CeEEEEeCCCCCCHHHH
Confidence 983211 111 122333444433 47999999999999984
No 74
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.26 E-value=1.6e-11 Score=103.32 Aligned_cols=119 Identities=14% Similarity=0.182 Sum_probs=79.3
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~ 92 (383)
|++.....+.+++..+.+|||||+++|...+...++.+|++++|+|++.+.. ++ ...+.+..+.. .++|
T Consensus 38 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p- 110 (171)
T 1upt_A 38 TIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR---IG---ISKSELVAMLEEEELRKAI- 110 (171)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT---HH---HHHHHHHHHHTCGGGTTCE-
T ss_pred cCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHhchhhCCCE-
Confidence 4444555677788999999999999998888888999999999999987531 11 22233332222 3666
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++++||+|+.... ...++.+.+ ....+. ...++++++||++|.|++++.
T Consensus 111 iilv~nK~Dl~~~~----~~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 111 LVVFANKQDMEQAM----TSSEMANSL----GLPALK-DRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp EEEEEECTTSTTCC----CHHHHHHHH----TGGGCT-TSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCCcCCC----CHHHHHHHh----Cchhcc-CCceEEEECcCCCCcCHHHHH
Confidence 89999999994321 112222222 111111 124589999999999999854
No 75
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.26 E-value=3.6e-12 Score=109.08 Aligned_cols=126 Identities=18% Similarity=0.222 Sum_probs=83.9
Q ss_pred CHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 8 NEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 8 ~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
...+....++.+.....+..++ ..+.||||||+++|...+...++.+|++++|+|++.+.. ++ ....++..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~ 108 (186)
T 2bme_A 35 FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---YN---ALTNWLTDA 108 (186)
T ss_dssp CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH---HH---THHHHHHHH
T ss_pred CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHH
Confidence 3334445556555555566555 578999999999999888889999999999999987542 11 223333333
Q ss_pred HH---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KT---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. .++| +++++||+|+.... +... .+...+.+..+ ++++++||++|.|+.++.+
T Consensus 109 ~~~~~~~~p-iilv~nK~Dl~~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 109 RMLASQNIV-IILCGNKKDLDADR--EVTF----LEASRFAQENE------LMFLETSALTGENVEEAFV 165 (186)
T ss_dssp HHHSCTTCE-EEEEEECGGGGGGC--CSCH----HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred HHhcCCCCc-EEEEEECccccccc--ccCH----HHHHHHHHHcC------CEEEEecCCCCCCHHHHHH
Confidence 33 3566 89999999983211 1111 22333444443 4799999999999998644
No 76
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.25 E-value=6.9e-12 Score=105.55 Aligned_cols=116 Identities=25% Similarity=0.302 Sum_probs=76.3
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChH------HHHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYV------PNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~------~~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..|+|++.....+.+++..+.+|||||+.+|. .....+++ .+|++++|+|++.. .+....+..
T Consensus 33 ~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~~~~~~~~~ 103 (165)
T 2wji_A 33 WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQ 103 (165)
T ss_dssp ----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------HHHHHHHHH
T ss_pred CCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------hHhHHHHHH
Confidence 45778887777788888999999999998773 11223333 79999999999762 133345555
Q ss_pred HHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 85 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 85 ~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+...++| +++|.||+|+ .+ .+ .+..+...+.+.++ .+++++||++|.|++++.
T Consensus 104 ~~~~~~p-~ilv~nK~Dl--~~---~~--~~~~~~~~~~~~~~------~~~~~~SA~~~~~v~~l~ 156 (165)
T 2wji_A 104 LMEMGAN-LLLALNKMDL--AK---SL--GIEIDVDKLEKILG------VKVVPLSAAKKMGIEELK 156 (165)
T ss_dssp HHHTTCC-EEEEEECHHH--HH---HT--TCCCCHHHHHHHHT------SCEEECBGGGTBSHHHHH
T ss_pred HHhcCCC-EEEEEEchHh--cc---cc--ChhhHHHHHHHHhC------CCEEEEEcCCCCCHHHHH
Confidence 6667888 8999999998 21 00 00001222333333 369999999999999853
No 77
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.25 E-value=1.7e-11 Score=105.78 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=80.7
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCC
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVT 91 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~ 91 (383)
.|++.....+.+++..+.+|||||++++...+...++.+|++++|+|++++.. |+ .....+..+. ..++|
T Consensus 53 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p 126 (190)
T 1m2o_B 53 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER---FD---EARVELDALFNIAELKDVP 126 (190)
T ss_dssp CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTCC
T ss_pred cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH---HH---HHHHHHHHHHcchhhcCCC
Confidence 45555566777888999999999999988777778899999999999987531 11 2223333332 24677
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcC------CCCCCCceEEEcccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG------YNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++++||+|+... .+. +++.+.++... +......+++++||++|.|++++
T Consensus 127 -iilv~NK~Dl~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 182 (190)
T 1m2o_B 127 -FVILGNKIDAPNA-VSE-------AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA 182 (190)
T ss_dssp -EEEEEECTTSTTC-CCH-------HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHH
T ss_pred -EEEEEECCCCcCC-CCH-------HHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHH
Confidence 8999999999431 111 22333333211 01112468999999999999984
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.25 E-value=1.3e-11 Score=106.81 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=73.0
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-cCCCeEEEEEecCCCCCCCcc
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 108 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-~~i~~~ivviNK~D~~~~~~~ 108 (383)
..+.||||||+++|...+...++.+|++|+|+|++.+.. + .....++..+.. .++| +++|+||+|+......
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---L---DRAKTWVNQLKISSNYI-IILVANKIDKNKFQVD 165 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhhCCCc-EEEEEECCCcccccCC
Confidence 789999999999998888899999999999999987642 1 122333444433 4666 9999999995211111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+++..+++..+ ++++++||++|.|+.++.+
T Consensus 166 -------~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 196 (208)
T 3clv_A 166 -------ILEVQKYAQDNN------LLFIQTSAKTGTNIKNIFY 196 (208)
T ss_dssp -------HHHHHHHHHHTT------CEEEEECTTTCTTHHHHHH
T ss_pred -------HHHHHHHHHHcC------CcEEEEecCCCCCHHHHHH
Confidence 223344445443 4799999999999998543
No 79
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.25 E-value=1.7e-11 Score=105.38 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=79.0
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~ 92 (383)
|+...+..+...+..+.||||||+++|...+...++.+|++++|+|+++... + ....+.+..+.. .++|
T Consensus 54 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p- 126 (188)
T 1zd9_A 54 TVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK---I---EASKNELHNLLDKPQLQGIP- 126 (188)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-
T ss_pred CCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCC-
Confidence 4444555677788999999999999998888888999999999999987431 1 122233333322 4677
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+++|+||+|+.... + .+++.+. +...... ....+++++||++|.|++++
T Consensus 127 iilv~NK~Dl~~~~-~---~~~~~~~----~~~~~~~-~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 127 VLVLGNKRDLPGAL-D---EKELIEK----MNLSAIQ-DREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp EEEEEECTTSTTCC-C---HHHHHHH----TTGGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred EEEEEECCCCccCC-C---HHHHHHH----hChhhhc-cCCeeEEEEECCCCCCHHHH
Confidence 89999999994321 1 1122222 1111111 12468999999999999985
No 80
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.25 E-value=9.6e-12 Score=106.86 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=74.1
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~ 104 (383)
...+.||||||+++|...+...++.+|++|+|+|++.+.. + .....++..+.. .++| +++++||+|+..
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 141 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS---F---LNVRNWISQLQMHAYSENPD-IVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 3589999999999999989999999999999999987542 1 123344444443 4677 899999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. +. ..+++..+....+ ++++++||++|.|++++.+
T Consensus 142 ~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 177 (195)
T 3bc1_A 142 QR--AV----KEEEARELAEKYG------IPYFETSAANGTNISHAIE 177 (195)
T ss_dssp GC--CS----CHHHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cc--cc----CHHHHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 10 00 1122333444444 3699999999999998643
No 81
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=2.4e-11 Score=103.15 Aligned_cols=120 Identities=15% Similarity=0.219 Sum_probs=72.7
Q ss_pred hcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---c
Q 016750 14 KGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---L 88 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~ 88 (383)
.+++.+.....+..++ ..+.||||||+++|...+...++.+|++++|+|++.+.. + ....+++..+.. .
T Consensus 42 ~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~ 115 (180)
T 2g6b_A 42 STVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---F---DNIQAWLTEIHEYAQH 115 (180)
T ss_dssp CCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCT
T ss_pred CceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCC
Confidence 4444554444445554 478999999999998888889999999999999987542 1 122334444443 4
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++| +++++||+|+.... +... ++...+.+..+ ++++++||++|.|++++.+
T Consensus 116 ~~p-iilv~nK~Dl~~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 116 DVA-LMLLGNKVDSAHER--VVKR----EDGEKLAKEYG------LPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp TCE-EEEEEECCSTTSCC--CSCH----HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred CCc-EEEEEECcccCccc--ccCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 566 89999999994211 1011 12223334443 3699999999999998543
No 82
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.24 E-value=2.4e-11 Score=105.63 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=74.2
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCeEEEEEecCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~~ivviNK~D~~~ 104 (383)
....+.||||||+++|...+...++.+|++|+|+|++.+.. + .....++..+.. .++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMED 127 (203)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCSSCE-EEEEEECTTCTT
T ss_pred eEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccCc
Confidence 35688999999999999888889999999999999987532 1 123334444444 3566 899999999943
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. ... .++...+.+.++ ++++++||++|.|+.++.+
T Consensus 128 ~~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 128 ER--VVS----SERGRQLADHLG------FEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp SC--CSC----HHHHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred cc--ccC----HHHHHHHHHHCC------CeEEEEECCCCCCHHHHHH
Confidence 11 101 122333444444 3799999999999998654
No 83
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=1.6e-11 Score=105.77 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=73.6
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 102 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~ 102 (383)
.....+.||||||+++|...+...++.+|++|+|+|++.+.. + .....++..+.. .++| +++|+||+|+
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl 133 (195)
T 1x3s_A 61 GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT---F---VKLDNWLNELETYCTRNDIV-NMLVGNKIDK 133 (195)
T ss_dssp TEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHTTCCSCSCCE-EEEEEECTTS
T ss_pred CeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCc-EEEEEECCcC
Confidence 345678999999999998888888999999999999987532 1 122333444433 2455 8899999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....... ++...+.+..+ ++++++||++|.|++++.+
T Consensus 134 ~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 134 ENREVDR-------NEGLKFARKHS------MLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp SSCCSCH-------HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred cccccCH-------HHHHHHHHHcC------CEEEEecCCCCCCHHHHHH
Confidence 4322211 22233444443 4799999999999998644
No 84
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.24 E-value=1.1e-11 Score=103.91 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=77.4
Q ss_pred hhcceeeccceeeeec--CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---
Q 016750 13 IKGKTVEVGRAHFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--- 87 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--- 87 (383)
...++.+.....+..+ ...+.||||||+++|...+...++.+|++++|+|++++.. + .....++..+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~ 106 (170)
T 1ek0_A 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS---F---IKARHWVKELHEQAS 106 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSC
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH---H---HHHHHHHHHHHHhcC
Confidence 3334444333344443 4578999999999999888889999999999999987532 1 122333333333
Q ss_pred cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 88 LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 88 ~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.++| +++++||+|+...+.... ...++...+.+..+ .+++++||++|.|+.++
T Consensus 107 ~~~p-iilv~nK~Dl~~~~~~~~---v~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 107 KDII-IALVGNKIDXLQEGGERK---VAREEGEKLAEEKG------LLFFETSAKTGENVNDV 159 (170)
T ss_dssp TTCE-EEEEEECGGGGGSSCCCC---SCHHHHHHHHHHHT------CEEEECCTTTCTTHHHH
T ss_pred CCCc-EEEEEECCCccccccccC---CCHHHHHHHHHHcC------CEEEEEeCCCCCCHHHH
Confidence 2566 889999999832110000 01122223333333 47999999999999984
No 85
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.24 E-value=9.7e-12 Score=104.46 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=77.7
Q ss_pred cceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCC
Q 016750 15 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVT 91 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~ 91 (383)
|.+.......+......+.||||||+++|...+...++.+|++++|+|++.+.. + .....++..+... ++|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~ 113 (170)
T 1z0j_A 40 GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET---F---STLKNWVRELRQHGPPSIV 113 (170)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTSE
T ss_pred eEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCc
Confidence 344433333333345788999999999998888888999999999999987542 1 1223344445443 455
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++++||+|+. +..+. ..++...+.+..+ .+++++||++|.|++++.
T Consensus 114 -iilv~nK~Dl~--~~~~v----~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 114 -VAIAGNKCDLT--DVREV----MERDAKDYADSIH------AIFVETSAKNAININELF 160 (170)
T ss_dssp -EEEEEECTTCG--GGCCS----CHHHHHHHHHHTT------CEEEECBTTTTBSHHHHH
T ss_pred -EEEEEECCccc--ccccc----CHHHHHHHHHHcC------CEEEEEeCCCCcCHHHHH
Confidence 88899999993 21110 1122333444443 479999999999999853
No 86
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.23 E-value=3.1e-11 Score=104.27 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=73.7
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~ 92 (383)
|++.....++.++..+.+|||||+++|...+...++.+|++++|+|++++.. ++ ...+.+..+.. .++|
T Consensus 60 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~l~~~~~~~~~~~~p- 132 (192)
T 2b6h_A 60 TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VQ---ESADELQKMLQEDELRDAV- 132 (192)
T ss_dssp ETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTCE-
T ss_pred cCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHhcccccCCCe-
Confidence 4444445567788999999999999998888888999999999999987531 11 22233333322 2666
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++|+||+|+.... ..+++.+ .+...... ...++++++||++|.|++++.
T Consensus 133 iilv~NK~Dl~~~~----~~~~i~~----~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 133 LLVFANKQDMPNAM----PVSELTD----KLGLQHLR-SRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp EEEEEECTTSTTCC----CHHHHHH----HTTGGGCS-SCCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECCCCCCCC----CHHHHHH----HhCccccc-CCceEEEECcCCCcCCHHHHH
Confidence 89999999994321 1122222 22111111 124679999999999999853
No 87
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=9.1e-12 Score=108.61 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=79.8
Q ss_pred hcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---
Q 016750 14 KGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--- 88 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--- 88 (383)
..++.+.....+..++ ..+.||||||+++|...+..+++.+|++++|+|++.... ++ ....++..+...
T Consensus 57 ~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~ 130 (201)
T 2ew1_A 57 ATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYASN 130 (201)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCT
T ss_pred CccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCC
Confidence 3444555445555555 478999999999999888889999999999999987532 11 223444444432
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++| +++|+||+|+. +..+.. .++...+.+..+ .+++++||++|.|++++.+
T Consensus 131 ~~p-iilv~NK~Dl~--~~~~v~----~~~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 131 KVI-TVLVGNKIDLA--ERREVS----QQRAEEFSEAQD------MYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp TCE-EEEEEECGGGG--GGCSSC----HHHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred CCC-EEEEEECCCCc--cccccC----HHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 566 88999999983 211100 112223333333 4799999999999998643
No 88
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.23 E-value=7.5e-12 Score=106.40 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=70.8
Q ss_pred HHHHhhcceeeccceeeeec---CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 9 EEERIKGKTVEVGRAHFETE---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 9 ~~E~~rG~Ti~~~~~~~~~~---~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.++....++.+.....+..+ ...+.||||||+++|...+...++.+|++++|+|++++.. ++ ....++..+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~ 107 (182)
T 1ky3_A 34 SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS---FE---NIKSWRDEF 107 (182)
T ss_dssp CTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHH---HH---THHHHHHHH
T ss_pred CcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH---HH---HHHHHHHHH
Confidence 33444445555555555544 3578999999999998888888999999999999987542 11 223333333
Q ss_pred HH-------cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KT-------LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~-------~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. .++| +++++||+|+.... .. ...+++..+.+... ..+++++||++|.|++++.+
T Consensus 108 ~~~~~~~~~~~~p-~ilv~nK~Dl~~~~--~~---v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~ 170 (182)
T 1ky3_A 108 LVHANVNSPETFP-FVILGNKIDAEESK--KI---VSEKSAQELAKSLG-----DIPLFLTSAKNAINVDTAFE 170 (182)
T ss_dssp HHHHCCSCTTTCC-EEEEEECTTSCGGG--CC---SCHHHHHHHHHHTT-----SCCEEEEBTTTTBSHHHHHH
T ss_pred HHHhcccCcCCCc-EEEEEECCcccccc--cc---CCHHHHHHHHHhcC-----CCeEEEEecCCCCCHHHHHH
Confidence 22 4677 88999999983211 00 00122223333222 35799999999999998543
No 89
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.23 E-value=5.5e-12 Score=108.74 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=78.6
Q ss_pred hhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--
Q 016750 13 IKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-- 88 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~-- 88 (383)
...++.+.....+..++ ..+.||||||+++|...+...++.+|++|+|+|+++... + .....++..+...
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~l~~i~~~~~ 124 (191)
T 2a5j_A 51 DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLTSWLEDARQHSS 124 (191)
T ss_dssp ---CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSC
T ss_pred CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcC
Confidence 33344444444455544 578999999999988877888999999999999987532 1 1333444444443
Q ss_pred -CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 89 -GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 89 -~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++| +++|+||+|+.... +.. .++...+.+..+ ++++++||++|.|++++.+
T Consensus 125 ~~~p-iilv~nK~Dl~~~~--~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 125 SNMV-IMLIGNKSDLESRR--DVK----REEGEAFAREHG------LIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp TTCE-EEEEEECTTCGGGC--CSC----HHHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred CCCC-EEEEEECcccCCcc--ccC----HHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 666 88999999993210 000 122333444443 4799999999999998643
No 90
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.23 E-value=9.4e-12 Score=113.74 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=84.0
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHH------HHHHhh--hhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVP------NMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~------~~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
...|+|++.....+.+++..+.+|||||+.+|.. .....+ ..+|++++|+|++... +....+.
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---------~~~~~~~ 102 (271)
T 3k53_A 32 NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---------RNLFLTL 102 (271)
T ss_dssp ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---------HHHHHHH
T ss_pred CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---------hhHHHHH
Confidence 4568899998889999999999999999988744 122222 5799999999998742 4555666
Q ss_pred HHHHcC-CCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTLG-VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~~-i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+...+ +| +++++||+|+ .+ . .........+.+.++ ++++|+||++|.|+.++.+
T Consensus 103 ~~~~~~~~p-~ilv~NK~Dl--~~---~--~~~~~~~~~l~~~lg------~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 103 ELFEMEVKN-IILVLNKFDL--LK---K--KGAKIDIKKMRKELG------VPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp HHHHTTCCS-EEEEEECHHH--HH---H--HTCCCCHHHHHHHHS------SCEEECBGGGTBTHHHHHH
T ss_pred HHHhcCCCC-EEEEEEChhc--Cc---c--cccHHHHHHHHHHcC------CcEEEEEeCCCCCHHHHHH
Confidence 667777 88 8899999997 21 0 001111222333334 4799999999999998643
No 91
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.23 E-value=4e-11 Score=92.25 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=68.7
Q ss_pred CCCeeEEEEEEEcc-CCeEEEEEEEEeEEecCCEEEEecCC-cEEEEEEEEECCccceecCCCCeEEEEEecCCccCcee
Q 016750 179 NGPFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 256 (383)
Q Consensus 179 ~~p~~~~I~~~~~~-~G~vv~G~V~sG~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~ 256 (383)
..|.++.|...+.- .|.++.|+|++|+|++|+.| |++ ...+|+||+++++++++|.+||.|+++++|... ++++
T Consensus 32 ~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~~ 107 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVKK 107 (116)
T ss_dssp SCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCCT
T ss_pred cCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccCC
Confidence 45667777663211 28899999999999999999 888 799999999999999999999999999999876 8999
Q ss_pred eEEEec
Q 016750 257 GFVLSS 262 (383)
Q Consensus 257 G~vl~~ 262 (383)
|++|-.
T Consensus 108 GdVLyv 113 (116)
T 1xe1_A 108 GDVLEI 113 (116)
T ss_dssp TCEEEE
T ss_pred CcEEEE
Confidence 999854
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.22 E-value=1.7e-11 Score=104.93 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=79.3
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~ 92 (383)
|+......+.+++..+.+|||||+++|...+...++.+|++++|+|++++.. + ....+.+..+.. .++|
T Consensus 49 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p- 121 (186)
T 1ksh_A 49 TLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR---M---QDCQRELQSLLVEERLAGAT- 121 (186)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhcCCCc-
Confidence 4444455666788999999999999998888888999999999999987531 1 122233333322 3566
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++|+||+|+.... ..+++ .+.+...... ...++++++||++|.|++++.+
T Consensus 122 iilv~nK~Dl~~~~----~~~~~----~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (186)
T 1ksh_A 122 LLIFANKQDLPGAL----SCNAI----QEALELDSIR-SHHWRIQGCSAVTGEDLLPGID 172 (186)
T ss_dssp EEEEEECTTSTTCC----CHHHH----HHHTTGGGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCccCCCCC----CHHHH----HHHhChhhcc-CCceEEEEeeCCCCCCHHHHHH
Confidence 89999999994321 11222 2222111111 1246899999999999998543
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.22 E-value=6.5e-11 Score=101.15 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=74.7
Q ss_pred eeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-H---HcCCCeEEEEEe
Q 016750 23 AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVN 98 (383)
Q Consensus 23 ~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~---~~~i~~~ivviN 98 (383)
..+.+++..+.+|||||+++|...+..+++.+|++++|+|+++... ++ ...+.+..+ . ..++| ++++.|
T Consensus 53 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~N 125 (181)
T 1fzq_A 53 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR---FE---ETGQELTELLEEEKLSCVP-VLIFAN 125 (181)
T ss_dssp EEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG---HH---HHHHHHHHHTTCGGGTTCC-EEEEEE
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---HHHHHHHHHHhChhhcCCC-EEEEEE
Confidence 3456678899999999999998888888999999999999987531 11 222233222 1 13577 899999
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 99 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 99 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|+|+.... . .++ +.+.+...... ...++++++||++|.|++++
T Consensus 126 K~Dl~~~~-~---~~~----~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 126 KQDLLTAA-P---ASE----IAEGLNLHTIR-DRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp CTTSTTCC-C---HHH----HHHHTTGGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred CcCcccCC-C---HHH----HHHHhCchhcc-CCceEEEEccCCCCCCHHHH
Confidence 99994321 1 112 22222111111 12468999999999999985
No 94
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.22 E-value=2.6e-11 Score=103.72 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=73.7
Q ss_pred eeeccceeeeecCc--EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCC
Q 016750 17 TVEVGRAHFETETT--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGV 90 (383)
Q Consensus 17 Ti~~~~~~~~~~~~--~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i 90 (383)
+.+.....+..++. .+.||||||+++|.......++.+|++++|+|+++... ++ .....+..+.. .++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~ 110 (189)
T 4dsu_A 37 IEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---FE---DIHHYREQIKRVKDSEDV 110 (189)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCC
T ss_pred chheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC
Confidence 33333334444444 47789999999998888888999999999999987532 11 22233333333 367
Q ss_pred CeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 91 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 91 ~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
| +++++||+|+.......+ .+..+.+..+ .+++++||++|.|++++.+
T Consensus 111 p-~i~v~nK~Dl~~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 111 P-MVLVGNKCDLPSRTVDTK-------QAQDLARSYG------IPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp C-EEEEEECTTSSSCSSCHH-------HHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred c-EEEEEECccCcccccCHH-------HHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 7 899999999953222222 2233333433 3699999999999999654
No 95
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.22 E-value=6.5e-12 Score=108.27 Aligned_cols=118 Identities=17% Similarity=0.154 Sum_probs=80.2
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCe
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTK 92 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~ 92 (383)
++.......+......+.||||||+++|.......++.+|++++|+|+++... + .....++..+.. .++|
T Consensus 58 ~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p- 130 (191)
T 3dz8_A 58 IDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWATQIKTYSWDNAQ- 130 (191)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-
T ss_pred eEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-
Confidence 33333333444466789999999999999888899999999999999987432 1 133445555554 3566
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++|+||+|+.... .. ..++...+.+..+ ++++++||++|.|+.++.+
T Consensus 131 iilv~nK~Dl~~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 131 VILVGNKCDMEEER--VV----PTEKGQLLAEQLG------FDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEECTTCGGGC--CS----CHHHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCCcccc--cc----CHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 88999999983211 10 1122333444444 3799999999999998644
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.21 E-value=2.2e-11 Score=104.57 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=77.7
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~ 92 (383)
|+......+..++..+.+|||||+++|...+...++.+|++++|+|++++.. + ....+.+..+.. .++|
T Consensus 53 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p- 125 (189)
T 2x77_A 53 TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR---M---GVAKHELYALLDEDELRKSL- 125 (189)
T ss_dssp STTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT---H---HHHHHHHHHHHTCSTTTTCE-
T ss_pred CCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhhcCCCe-
Confidence 4444445567788999999999999988777778899999999999987531 1 122233333222 2566
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++|+||+|+.... . .+++.+ .+...... ...++++++||++|.|++++.
T Consensus 126 iilv~nK~Dl~~~~-~---~~~~~~----~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 126 LLIFANKQDLPDAA-S---EAEIAE----QLGVSSIM-NRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp EEEEEECTTSTTCC-C---HHHHHH----HTTGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCCcCCC-C---HHHHHH----HhChhhcc-CCceEEEEccCCCccCHHHHH
Confidence 89999999994321 1 112222 22111111 124589999999999999854
No 97
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.21 E-value=1.5e-11 Score=107.07 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=70.4
Q ss_pred eeccceeeeec----CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH------
Q 016750 18 VEVGRAHFETE----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------ 87 (383)
Q Consensus 18 i~~~~~~~~~~----~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~------ 87 (383)
.+.....+.++ ...+.||||||+++|...+...++.+|++|+|+|++.+.. + .....++..+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~ 130 (208)
T 2yc2_C 57 VEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---F---ESCKAWFELLKSARPDRE 130 (208)
T ss_dssp ----CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---H---HHHHHHHHHHHHHCSCTT
T ss_pred eEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhhcccc
Confidence 35555566666 4589999999999998888888999999999999987542 1 123344444444
Q ss_pred cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccc-ccccccccc
Q 016750 88 LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-GLNMKTRVD 152 (383)
Q Consensus 88 ~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~-g~~i~~~~~ 152 (383)
.++| +++|+||+|+... ..+ ...+++..+.+.++ ++++++||++ |.|+.++.+
T Consensus 131 ~~~p-iilv~nK~Dl~~~-~~~----v~~~~~~~~~~~~~------~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 131 RPLR-AVLVANKTDLPPQ-RHQ----VRLDMAQDWATTNT------LDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp SCCE-EEEEEECC--------C----CCHHHHHHHHHHTT------CEEEECCC-------CHHHH
T ss_pred cCCc-EEEEEECcccchh-hcc----CCHHHHHHHHHHcC------CEEEEeccCCCCcCHHHHHH
Confidence 3666 8999999999320 000 01233444555554 4799999999 999998644
No 98
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.21 E-value=5.6e-12 Score=111.61 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=77.3
Q ss_pred HHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH
Q 016750 9 EEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK 86 (383)
Q Consensus 9 ~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~ 86 (383)
.++....++.+.....+..++ ..+.||||||+++|...+...++.+|++|+|+|++.+.. + ....+++..+.
T Consensus 39 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~---~~~~~~l~~i~ 112 (223)
T 3cpj_B 39 NMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---Y---ENCNHWLSELR 112 (223)
T ss_dssp CC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---H---HHHHHHHHHHH
T ss_pred CCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHH
Confidence 334444455555445555555 578999999999998888888999999999999987542 1 12233344444
Q ss_pred Hc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 87 TL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 87 ~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. ++| +++|+||+|+... .+.. .++...+.+..+ ++++++||++|.|++++.+
T Consensus 113 ~~~~~~~p-iilv~nK~Dl~~~--~~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 113 ENADDNVA-VGLIGNKSDLAHL--RAVP----TEESKTFAQENQ------LLFTETSALNSENVDKAFE 168 (223)
T ss_dssp HHCC--CE-EEEEECCGGGGGG--CCSC----HHHHHHHHHHTT------CEEEECCCC-CCCHHHHHH
T ss_pred HhCCCCCe-EEEEEECcccccc--cccC----HHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 43 566 8899999998321 1000 122333444443 4799999999999998543
No 99
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.21 E-value=7.3e-12 Score=105.33 Aligned_cols=119 Identities=12% Similarity=0.114 Sum_probs=71.3
Q ss_pred hcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---c
Q 016750 14 KGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---L 88 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~ 88 (383)
..++.+.....+..++ ..+.||||||+++|.......++.+|++++|+|++++.. + .....++..+.. .
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~ 110 (170)
T 1z08_A 37 TTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---F---QKVKNWVKELRKMLGN 110 (170)
T ss_dssp CCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHGG
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCC
Confidence 3344444334444444 467899999999998888888899999999999987532 1 122233333332 3
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
++| +++++||+|+... .+.. .++...+.+..+ .+++++||++|.|++++.
T Consensus 111 ~~p-iilv~nK~Dl~~~--~~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 111 EIC-LCIVGNKIDLEKE--RHVS----IQEAESYAESVG------AKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp GSE-EEEEEECGGGGGG--CCSC----HHHHHHHHHHTT------CEEEEEBTTTTBSHHHHH
T ss_pred CCe-EEEEEECcccccc--cccC----HHHHHHHHHHcC------CeEEEecCCCCCCHHHHH
Confidence 566 8899999998321 1101 122334444444 479999999999999854
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.21 E-value=4.2e-11 Score=105.02 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=71.6
Q ss_pred ceeeeec---CcEEEEEeCCCCCChHH-HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH----HH-----Hc
Q 016750 22 RAHFETE---TTRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AK-----TL 88 (383)
Q Consensus 22 ~~~~~~~---~~~i~liDtPG~~~~~~-~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~----~~-----~~ 88 (383)
...+.++ +..+.||||||+++|.. .+...++.+|++|+|+|++... .+..+.... +. ..
T Consensus 43 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 114 (214)
T 2fh5_B 43 SAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ--------REVKDVAEFLYQVLIDSMALKN 114 (214)
T ss_dssp EEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH--------HHHHHHHHHHHHHHHHHHTSTT
T ss_pred eEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC--------HHHHHHHHHHHHHHhhhhhccc
Confidence 3345555 67899999999999987 4555688999999999997621 112222222 21 12
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHh---------------------cC-----CCC---CCCceEEEc
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKA---------------------SG-----YNV---KKDVQFLPI 139 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-----~~~---~~~~~~i~i 139 (383)
++| +++|+||+|+..... .+.+.+.+...+.. .+ |.. ...++++++
T Consensus 115 ~~p-iilv~nK~Dl~~~~~----~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 189 (214)
T 2fh5_B 115 SPS-LLIACNKQDIAMAKS----AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLEC 189 (214)
T ss_dssp CCE-EEEEEECTTSTTCCC----HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEEC
T ss_pred CCC-EEEEEECCCCCCccc----HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEe
Confidence 566 899999999953321 23344444443331 00 000 015689999
Q ss_pred ccccc------cccccc
Q 016750 140 SGLMG------LNMKTR 150 (383)
Q Consensus 140 Sa~~g------~~i~~~ 150 (383)
||++| .|++++
T Consensus 190 SAk~g~~~~~~~gv~~l 206 (214)
T 2fh5_B 190 SAKGGRGDTGSADIQDL 206 (214)
T ss_dssp BCC-------CCBCHHH
T ss_pred eccCCCccccccChHHH
Confidence 99999 999884
No 101
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.21 E-value=2.5e-11 Score=101.57 Aligned_cols=106 Identities=17% Similarity=0.100 Sum_probs=72.4
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 103 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~ 103 (383)
....+.||||||+++|...+...++.+|++++|+|++.... ++ ....++..+.. .++| +++++||+|+.
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCcCCCc-EEEEEECcccc
Confidence 35578999999999998888888999999999999987432 11 22233333332 3677 89999999993
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+..+. ..+++..+.+..+ ..+++++||++|.|++++.
T Consensus 122 --~~~~~----~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~ 158 (167)
T 1c1y_A 122 --DERVV----GKEQGQNLARQWC-----NCAFLESSAKSKINVNEIF 158 (167)
T ss_dssp --GGCCS----CHHHHHHHHHHTT-----SCEEEECBTTTTBSHHHHH
T ss_pred --ccccC----CHHHHHHHHHHcc-----CCcEEEecCCCCCCHHHHH
Confidence 21110 1122333444432 3589999999999999853
No 102
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.20 E-value=8.1e-12 Score=104.72 Aligned_cols=115 Identities=19% Similarity=0.136 Sum_probs=76.0
Q ss_pred eeccceeeeec--CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH--cCCCeE
Q 016750 18 VEVGRAHFETE--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKL 93 (383)
Q Consensus 18 i~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--~~i~~~ 93 (383)
.+.....+..+ ...+.||||||+++|...+...++.+|++++|+|++.... + .....++..+.. .++| +
T Consensus 40 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-i 112 (168)
T 1z2a_A 40 VDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES---F---EAISSWREKVVAEVGDIP-T 112 (168)
T ss_dssp SSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCSCC-E
T ss_pred EEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-E
Confidence 33333444444 3578999999999988777888899999999999987532 1 122333333333 3677 8
Q ss_pred EEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 94 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 94 ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
++++||+|+. +..+. ..+++..+.+..+ .+++++||++|.|++++.
T Consensus 113 ilv~nK~Dl~--~~~~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 113 ALVQNKIDLL--DDSCI----KNEEAEGLAKRLK------LRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp EEEEECGGGG--GGCSS----CHHHHHHHHHHHT------CEEEECBTTTTBSSHHHH
T ss_pred EEEEECcccC--ccccc----CHHHHHHHHHHcC------CeEEEEecCCCCCHHHHH
Confidence 8999999983 21110 1122333444444 379999999999999853
No 103
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.20 E-value=1.5e-11 Score=106.07 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=74.1
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---CCCeEEEEEecCCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 103 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~---~i~~~ivviNK~D~~ 103 (383)
.....+.||||||+++|...+...++.+|++|+|+|++.... + .....++..+... ++| +++|+||+|+.
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 143 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---Y---AVVERWLKELYDHAEATIV-VMLVGNKSDLS 143 (193)
T ss_dssp TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHTTSCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECCCcc
Confidence 345788999999999998888888999999999999987532 1 1233444444432 566 88999999993
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
... +. ..++...+.+..+ ++++++||++|.|+.++.+
T Consensus 144 ~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 144 QAR--EV----PTEEARMFAENNG------LLFLETSALDSTNVELAFE 180 (193)
T ss_dssp GGC--CS----CHHHHHHHHHHTT------CEEEEECTTTCTTHHHHHH
T ss_pred ccc--cc----CHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 211 10 1122333444443 4799999999999998543
No 104
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.20 E-value=8.1e-12 Score=108.96 Aligned_cols=123 Identities=20% Similarity=0.185 Sum_probs=81.6
Q ss_pred HHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc
Q 016750 11 ERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL 88 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (383)
+...+++.+.....+..++ ..+.||||||+++|...+...++.+|++|+|+|++.+.. + .....++..+...
T Consensus 36 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~---~~~~~~~~~i~~~ 109 (206)
T 2bcg_Y 36 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES---F---NGVKMWLQEIDRY 109 (206)
T ss_dssp TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHH
T ss_pred CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHh
Confidence 3344555555555555554 478999999999998888888999999999999987532 1 1223334444432
Q ss_pred ---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 89 ---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 89 ---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++| +++|+||+|+.... +... ++...+....+ ++++++||++|.|++++.+
T Consensus 110 ~~~~~p-iilv~nK~Dl~~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 110 ATSTVL-KLLVGNKCDLKDKR--VVEY----DVAKEFADANK------MPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp SCTTCE-EEEEEECTTCTTTC--CSCH----HHHHHHHHHTT------CCEEECCTTTCTTHHHHHH
T ss_pred cCCCCC-EEEEEECCCCcccc--ccCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 466 88999999994311 1111 22233344443 4799999999999998654
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.20 E-value=6.6e-11 Score=110.11 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=87.4
Q ss_pred HHhhcceeeccceeeee-cCcEEEEEeCCCCCChH-----HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 11 ERIKGKTVEVGRAHFET-ETTRFTILDAPGHKSYV-----PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~-----~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
....|.|++..+..+.. ++..+.+|||||+++|. ......++.+|++|+|+|+++... ++.-....+.+..
T Consensus 32 ~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~~l~~~~~~l~~ 108 (307)
T 3r7w_A 32 TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LKDIEIFAKALKQ 108 (307)
T ss_dssp GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HHHHHHHHHHHHH
T ss_pred ccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HHHHHHHHHHHHH
Confidence 34678999998888775 67789999999999883 444556678999999999987542 1100011112222
Q ss_pred HHHc--CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 85 AKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 85 ~~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+... ++| +++++||+|+...+..+..+....+++..+.+.+|+. ..+++++||++ .|+.+.
T Consensus 109 l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~---~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 109 LRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP---NLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp HHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC---SCEEEECCTTS-SHHHHH
T ss_pred HHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC---CeEEEEeeecC-ChHHHH
Confidence 2222 677 8999999999321011111124446677778877753 36899999999 666664
No 106
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.20 E-value=1.5e-11 Score=108.43 Aligned_cols=130 Identities=19% Similarity=0.174 Sum_probs=81.3
Q ss_pred ecCCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 4 IMDTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 4 ~~D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
+.+.++++....+..+.....+..++ ..+.||||+|+++|.......++.+|++++|+|.+...+ |+ ....+
T Consensus 34 ~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~S---f~---~i~~~ 107 (216)
T 4dkx_A 34 MYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS---FQ---QTTKW 107 (216)
T ss_dssp HHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHH---HH---THHHH
T ss_pred HhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHH---HH---HHHHH
Confidence 34556666565555555444454444 467899999999999988889999999999999987542 22 33344
Q ss_pred HHHHHH---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 82 VMLAKT---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 82 ~~~~~~---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+..+.. .++| +|+|.||+|+... .+ -..++...+.+..+ ++++.+||++|.|++++++
T Consensus 108 ~~~i~~~~~~~~p-iilVgNK~Dl~~~--r~----V~~~e~~~~a~~~~------~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 108 IDDVRTERGSDVI-IMLVGNKTDLADK--RQ----VSIEEGERKAKELN------VMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp HHHHHHHHTTSSE-EEEEEECTTCGGG--CC----SCHHHHHHHHHHHT------CEEEEEBTTTTBSHHHHHH
T ss_pred HHHHHHhcCCCCe-EEEEeeccchHhc--Cc----ccHHHHhhHHHHhC------CeeEEEeCCCCcCHHHHHH
Confidence 444332 3566 8899999998321 00 11123344455554 4799999999999999643
No 107
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.20 E-value=3e-11 Score=105.45 Aligned_cols=122 Identities=19% Similarity=0.196 Sum_probs=79.5
Q ss_pred cceeeccceeeeecCc--EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--C
Q 016750 15 GKTVEVGRAHFETETT--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--G 89 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~~--~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~ 89 (383)
+++.+.....+..++. .+.||||||+++|.......++.+|++++|+|++++.. ++ ... .++..+... +
T Consensus 61 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~ 134 (204)
T 4gzl_A 61 PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPN 134 (204)
T ss_dssp CCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSS
T ss_pred CeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCC
Confidence 3444444444444444 45599999999998888888999999999999987542 11 111 334445544 7
Q ss_pred CCeEEEEEecCCCCCCCccHHHHHHH---------HHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 90 VTKLLLVVNKMDDHTVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 90 i~~~ivviNK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+| +++|+||+|+ .+. ....+.. .++...+.+..++ .+++++||++|.|++++.
T Consensus 135 ~p-iilv~nK~Dl--~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~ 196 (204)
T 4gzl_A 135 TP-IILVGTKLDL--RDD-KDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 196 (204)
T ss_dssp CC-EEEEEECHHH--HTC-HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred CC-EEEEEechhh--ccc-hhhhhhhhccccccccHHHHHHHHHhcCC-----cEEEEeeCCCCCCHHHHH
Confidence 77 8999999998 321 1111111 1234445555553 379999999999999853
No 108
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.20 E-value=7.3e-12 Score=108.93 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=77.9
Q ss_pred CHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 8 NEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 8 ~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
...+....++.+.....+..++ ..+.||||||+++|...+...++.+|++|+|+|++.+.. + .....++..+
T Consensus 50 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~ 123 (200)
T 2o52_A 50 FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---Y---NSLAAWLTDA 123 (200)
T ss_dssp ----------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHH
T ss_pred CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHH
Confidence 3344445555555555555555 689999999998887777788899999999999987542 1 1223344444
Q ss_pred HH---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KT---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. .++| +++|+||+|+.... .... .+...+.+..+ ++++++||++|.|++++.+
T Consensus 124 ~~~~~~~~p-iilv~nK~Dl~~~~--~v~~----~~~~~~~~~~~------~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 124 RTLASPNIV-VILCGNKKDLDPER--EVTF----LEASRFAQENE------LMFLETSALTGENVEEAFL 180 (200)
T ss_dssp HHHTCTTCE-EEEEEECGGGGGGC--CSCH----HHHHHHHHHTT------CEEEEECTTTCTTHHHHHH
T ss_pred HHhcCCCCc-EEEEEECCCccccc--ccCH----HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 33 2566 89999999983211 1111 22233444443 4799999999999999654
No 109
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.19 E-value=2.2e-11 Score=103.83 Aligned_cols=120 Identities=15% Similarity=0.201 Sum_probs=75.4
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~ 92 (383)
|+......+.+++..+.+|||||+++|...+...++.+|++++|+|++.+.. + ....+.+..+. ..++|
T Consensus 49 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p- 121 (183)
T 1moz_A 49 TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR---M---STASKELHLMLQEEELQDAA- 121 (183)
T ss_dssp STTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT---H---HHHHHHHHHHTTSSTTSSCE-
T ss_pred cCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhCCCe-
Confidence 4444445566778999999999999988878888999999999999987531 1 12233333332 24566
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++++||+|+.... . .++ +.+.+...... ...++++++||++|.|++++.+
T Consensus 122 iilv~nK~Dl~~~~-~---~~~----i~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 122 LLVFANKQDQPGAL-S---ASE----VSKELNLVELK-DRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp EEEEEECTTSTTCC-C---HHH----HHHHTTTTTCC-SSCEEEEEEBGGGTBTHHHHHH
T ss_pred EEEEEECCCCCCCC-C---HHH----HHHHhCccccc-CCceEEEEccCCCCcCHHHHHH
Confidence 89999999994321 1 112 22222222111 1245899999999999998543
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.19 E-value=5e-11 Score=112.00 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=76.2
Q ss_pred eeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHHc---CCCe
Q 016750 17 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL---GVTK 92 (383)
Q Consensus 17 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~---~i~~ 92 (383)
|++..+..++.++..++||||||+++|...+..+++.+|++|+|+|+++... |+ ...+.+ ..+... ++|
T Consensus 196 T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p- 268 (329)
T 3o47_A 196 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VN---EAREELMRMLAEDELRDAV- 268 (329)
T ss_dssp ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS---HH---HHHHHHHHHHTCGGGTTCE-
T ss_pred ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH---HH---HHHHHHHHHHhhhccCCCe-
Confidence 5666666778888999999999999998888889999999999999986431 11 222222 222222 676
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 93 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 93 ~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+|+|+||+|+.... ..+++.. .+...... ...++++++||++|.|++++.
T Consensus 269 iilV~NK~Dl~~~~----~~~~i~~----~~~~~~~~-~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 269 LLVFANKQDLPNAM----NAAEITD----KLGLHSLR-HRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp EEEEEECTTSTTCC----CHHHHHH----HHTCTTCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECccCCccc----CHHHHHH----Hhchhhhh-cCCCEEEEEECCCCcCHHHHH
Confidence 89999999994321 1122222 22211111 235689999999999999954
No 111
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.19 E-value=2.3e-11 Score=105.86 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=78.8
Q ss_pred hhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---
Q 016750 13 IKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--- 87 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--- 87 (383)
...++.+.....+..++ ..+.||||||+++|...+...++.+|++|+|+|++.+.. ++ ....++..+..
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~ 111 (207)
T 1vg8_A 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT---FK---TLDSWRDEFLIQAS 111 (207)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHC
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcc
Confidence 33444555444555444 578999999999988777788899999999999987542 11 22223322222
Q ss_pred ----cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 88 ----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 88 ----~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.++| +++|+||+|+....... +++..+..... ..+++++||++|.|++++.+
T Consensus 112 ~~~~~~~p-iilv~nK~Dl~~~~~~~-------~~~~~~~~~~~-----~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 112 PRDPENFP-FVVLGNKIDLENRQVAT-------KRAQAWCYSKN-----NIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp CSSGGGSC-EEEEEECTTSSCCCSCH-------HHHHHHHHHTT-----SCCEEECBTTTTBSHHHHHH
T ss_pred cccCCCCc-EEEEEECCCCcccccCH-------HHHHHHHHhcC-----CceEEEEeCCCCCCHHHHHH
Confidence 3667 88999999994221111 12222333111 35799999999999999654
No 112
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.18 E-value=1.7e-11 Score=102.48 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=70.2
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~~ 105 (383)
..+.||||||+++|.......++.+|++++|+|+++... + ......+..+.. .++| +++++||+|+...
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 123 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQS---F---QDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESE 123 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECCccccc
Confidence 458999999999999888888999999999999987532 1 112223322222 3677 8999999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+. ..++...+.+..+ .+++++||++|.|++++.
T Consensus 124 --~~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 157 (167)
T 1kao_A 124 --REV----SSSEGRALAEEWG------CPFMETSAKSKTMVDELF 157 (167)
T ss_dssp --CCS----CHHHHHHHHHHHT------SCEEEECTTCHHHHHHHH
T ss_pred --ccC----CHHHHHHHHHHhC------CCEEEecCCCCcCHHHHH
Confidence 110 1112233444444 369999999999999854
No 113
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=9e-11 Score=98.54 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=71.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-----cCCCeEEEEEecCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDH 103 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-----~~i~~~ivviNK~D~~ 103 (383)
...+.||||||+++|.......++.+|++++|+|++.... + .....++..+.. .++| +++++||+|+.
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~ 122 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS---L---EELKPIYEQICEIKGDVESIP-IMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTTHHHHHHHHHHHC---CCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCCC-EEEEEEccccc
Confidence 4578999999999999888889999999999999987532 1 133344444443 2577 89999999983
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
... +.. ..+...+....+ .+++++||++|.|++++
T Consensus 123 ~~~--~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 123 PSR--EVQ----SSEAEALARTWK------CAFMETSAKLNHNVKEL 157 (172)
T ss_dssp GGC--CSC----HHHHHHHHHHHT------CEEEECBTTTTBSHHHH
T ss_pred ccc--ccC----HHHHHHHHHHhC------CeEEEecCCCCcCHHHH
Confidence 211 100 111222333333 47999999999999984
No 114
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.18 E-value=1.4e-10 Score=96.49 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=71.5
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc----CCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~----~i~~~ivviNK~D~~~ 104 (383)
...+.+|||||+.++...+...+..+|++++|+|+++... + ....+++..+... ++| +++++||+|+..
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSC
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhh
Confidence 3567899999999998888888999999999999986432 1 1223333333332 677 889999999843
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..... +++..+.+..+ ++++++||++|.|+.++.
T Consensus 123 ~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 123 RTVES-------RQAQDLARSYG------IPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp CCSCH-------HHHHHHHHHHT------CCEEEECTTTCTTHHHHH
T ss_pred cccCH-------HHHHHHHHHcC------CeEEEecCCCCCCHHHHH
Confidence 22111 22333344444 369999999999999853
No 115
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.18 E-value=1.2e-11 Score=112.95 Aligned_cols=114 Identities=19% Similarity=0.158 Sum_probs=78.9
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCChH------HHHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYV------PNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~------~~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.|+|++.....+.. +..+.+|||||+.+|. ......+. .+|++++|+|++... ....+...+
T Consensus 34 pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---------~~~~~~~~l 103 (272)
T 3b1v_A 34 PGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---------RNLYLTTQL 103 (272)
T ss_dssp SCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---------HHHHHHHHH
T ss_pred CCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---------hHHHHHHHH
Confidence 48888887777776 7899999999998874 22233343 599999999997631 334455666
Q ss_pred HHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 86 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 86 ~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
...++| +++++||+|+ .+ .+ .+......+.+.++ ++++++||++|.|++++.
T Consensus 104 ~~~~~p-~ilv~NK~Dl--~~---~~--~~~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 104 IETGIP-VTIALNMIDV--LD---GQ--GKKINVDKLSYHLG------VPVVATSALKQTGVDQVV 155 (272)
T ss_dssp HHTCSC-EEEEEECHHH--HH---HT--TCCCCHHHHHHHHT------SCEEECBTTTTBSHHHHH
T ss_pred HhcCCC-EEEEEEChhh--CC---cC--CcHHHHHHHHHHcC------CCEEEEEccCCCCHHHHH
Confidence 678998 8999999998 21 00 00011222333333 479999999999999854
No 116
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.18 E-value=9.8e-11 Score=97.82 Aligned_cols=103 Identities=19% Similarity=0.128 Sum_probs=68.3
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~~ 105 (383)
..+.||||||+++|...+...++.+|++++|+|+++... ++ ....++..+.. .++| +++++||+|+...
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSDLEDK 124 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECcccccc
Confidence 578999999999999888889999999999999987432 11 22233333322 2677 8999999998321
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+.. .+++..+++..+ .+++++||++|.|++++.
T Consensus 125 --~~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 158 (168)
T 1u8z_A 125 --RQVS----VEEAKNRADQWN------VNYVETSAKTRANVDKVF 158 (168)
T ss_dssp --CCSC----HHHHHHHHHHHT------CEEEECCTTTCTTHHHHH
T ss_pred --CccC----HHHHHHHHHHcC------CeEEEeCCCCCCCHHHHH
Confidence 1111 122333444443 479999999999999854
No 117
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.18 E-value=8.1e-11 Score=115.62 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=66.8
Q ss_pred HHHhhcceeeccceeeeecCcEEEEEeCCCCCChHH--------HHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 10 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 10 ~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~--------~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
.....|+|.|.....+..++..++||||||+.++.. .+...+..+|++++|+|++.+... .+..+.
T Consensus 261 vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~------~~~~~~ 334 (476)
T 3gee_A 261 VSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD------DELTEI 334 (476)
T ss_dssp ------------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSG------GGHHHH
T ss_pred cCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch------hhhHHH
Confidence 344578999999999999999999999999977642 234467899999999999987531 122233
Q ss_pred HHHHHHc-CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 82 VMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 82 ~~~~~~~-~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..++..+ ++| +|+|+||+|+... ... .. +++... ++ .+++++||++|.|++++.+
T Consensus 335 ~~~l~~l~~~p-iIvV~NK~Dl~~~--~~~--~~--~~l~~~----~~-----~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 335 RELKAAHPAAK-FLTVANKLDRAAN--ADA--LI--RAIADG----TG-----TEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp HHHHHHCTTSE-EEEEEECTTSCTT--THH--HH--HHHHHH----HT-----SCEEECBTTTTBSHHHHHH
T ss_pred HHHHHhcCCCC-EEEEEECcCCCCc--cch--hH--HHHHhc----CC-----CceEEEEECCCCCHHHHHH
Confidence 3344443 455 8999999999432 111 11 122221 22 3799999999999998644
No 118
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.17 E-value=2.6e-11 Score=104.24 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=76.7
Q ss_pred HhhcceeeccceeeeecC--cEEEEEeCCCCCChH-HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-
Q 016750 12 RIKGKTVEVGRAHFETET--TRFTILDAPGHKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT- 87 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~-~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~- 87 (383)
....++.+.....+..++ ..+.||||||+++|. ..+...++.+|++|+|+|++.... ++ .....+..+..
T Consensus 49 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~ 122 (189)
T 1z06_A 49 TEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS---FH---SLPAWIEECKQH 122 (189)
T ss_dssp CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHH
T ss_pred CCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHh
Confidence 334444444444555554 578999999999887 667778889999999999987532 11 22333333332
Q ss_pred ---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccc---cccccc
Q 016750 88 ---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTR 150 (383)
Q Consensus 88 ---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g---~~i~~~ 150 (383)
.++| +++|+||+|+.... +. ..++...+.+..+ ++++++||++| .|+.++
T Consensus 123 ~~~~~~p-iilv~nK~Dl~~~~--~v----~~~~~~~~~~~~~------~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 123 LLANDIP-RILVGNKCDLRSAI--QV----PTDLAQKFADTHS------MPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp CCCSCCC-EEEEEECTTCGGGC--CS----CHHHHHHHHHHTT------CCEEECCSSSGGGGSCHHHH
T ss_pred cCCCCCC-EEEEEECccccccc--ee----CHHHHHHHHHHcC------CEEEEEeCCcCCcccCHHHH
Confidence 3577 89999999983211 00 1122333444443 36999999999 777763
No 119
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.17 E-value=1.4e-10 Score=102.86 Aligned_cols=127 Identities=14% Similarity=0.193 Sum_probs=77.3
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCC------Ch---HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHK------SY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~------~~---~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
.++|.+.....+..++..+.||||||+. .. ...+......+|++|+|+|++.... ++ .....+.+..
T Consensus 60 ~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~-~~~~~~~~~~ 135 (228)
T 2qu8_A 60 SFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LT-IKEQINLFYS 135 (228)
T ss_dssp -----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SC-HHHHHHHHHH
T ss_pred CCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cc-hHHHHHHHHH
Confidence 4566676666677778899999999993 31 1223334667899999999987642 11 0112334455
Q ss_pred HHHc--CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 85 AKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 85 ~~~~--~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+... ++| +++|+||+|+.... .......+.+..+.+..+. ..+++++||++|.|++++.+
T Consensus 136 l~~~~~~~p-iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gi~~l~~ 197 (228)
T 2qu8_A 136 IKSVFSNKS-IVIGFNKIDKCNMD---SLSIDNKLLIKQILDNVKN----PIKFSSFSTLTGVGVEQAKI 197 (228)
T ss_dssp HHTCC-CCC-EEEEEECGGGCC-----CCCHHHHHHHHHHHHHCCS----CEEEEECCTTTCTTHHHHHH
T ss_pred HHHhhcCCc-EEEEEeCcccCCch---hhHHHHHHHHHHHHHhcCC----CceEEEEecccCCCHHHHHH
Confidence 5544 777 89999999994311 1111222334444444331 25899999999999998644
No 120
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.17 E-value=7.6e-11 Score=100.52 Aligned_cols=109 Identities=18% Similarity=0.100 Sum_probs=74.0
Q ss_pred eeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEe
Q 016750 25 FETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVN 98 (383)
Q Consensus 25 ~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviN 98 (383)
+..++ ..+.||||||+.+|...+...++.+|++++|+|+++... ++ ....++..+.. .++| +++|+|
T Consensus 59 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~n 131 (187)
T 2a9k_A 59 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGN 131 (187)
T ss_dssp EEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCCTTCC-EEEEEE
T ss_pred EEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEE
Confidence 34444 478999999999999888889999999999999987431 11 22223232222 2677 899999
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 99 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 99 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
|+|+... .+. ..+++..+++..+ ++++++||++|.|++++.+
T Consensus 132 K~Dl~~~--~~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 132 KSDLEDK--RQV----SVEEAKNRAEQWN------VNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp CGGGGGG--CCS----CHHHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred Ccccccc--Ccc----CHHHHHHHHHHcC------CeEEEeCCCCCCCHHHHHH
Confidence 9998321 111 1123344445444 4799999999999998543
No 121
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.17 E-value=5.3e-12 Score=111.06 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=71.6
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~ 104 (383)
...+.||||||+++|...+...++.+|++|+|+|++.... + .....++..+.. .++| +++|+||+|+..
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~ 155 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQS---F---LNVRNWMSQLQANAYCENPD-IVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHH---H---HHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGG
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCC-EEEEEECCcccc
Confidence 5679999999999998888889999999999999987531 0 011222222221 3456 899999999932
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.. +. ..+++..+.+..+ ++++++||++|.|++++.+
T Consensus 156 ~~--~v----~~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 156 QR--EV----NERQARELADKYG------IPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp GC--CS----CHHHHHHHHHHTT------CCEEEEBTTTTBTHHHHHH
T ss_pred cc--cc----CHHHHHHHHHHCC------CcEEEEECCCCCCHHHHHH
Confidence 10 00 1123334444444 3699999999999998654
No 122
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=1.3e-10 Score=100.22 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=76.0
Q ss_pred eeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEEec
Q 016750 25 FETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNK 99 (383)
Q Consensus 25 ~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivviNK 99 (383)
+..++ ..+.||||||+++|...+...++.+|++++|+|++.... ++ ... .++..+... ++| +++|+||
T Consensus 59 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK 131 (194)
T 2atx_A 59 VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ---NVKEEWVPELKEYAPNVP-FLLIGTQ 131 (194)
T ss_dssp EESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHSTTCC-EEEEEEC
T ss_pred EEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEC
Confidence 44444 678999999999998888888999999999999987532 11 222 334455544 677 8999999
Q ss_pred CCCCCCCccHHHH------HHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 100 MDDHTVNWSKERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 100 ~D~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+|+.........+ ....++...+.+..++ .+++++||++|.|++++.
T Consensus 132 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 184 (194)
T 2atx_A 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA-----CCYVECSALTQKGLKTVF 184 (194)
T ss_dssp TTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-----SCEEECCTTTCTTHHHHH
T ss_pred hhhcccccchhhcccccCcccCHHHHHHHHHHcCC-----cEEEEeeCCCCCCHHHHH
Confidence 9994311000000 0012334445555553 279999999999999853
No 123
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.16 E-value=1e-12 Score=114.18 Aligned_cols=129 Identities=22% Similarity=0.215 Sum_probs=80.6
Q ss_pred eecCCCHHHHhhcceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHH
Q 016750 3 YIMDTNEEERIKGKTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 80 (383)
Q Consensus 3 ~~~D~~~~E~~rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~ 80 (383)
+..+...++...+++.+.....+..++ ..+.||||||+++|...+...++.+|++|+|+|+++... + .....
T Consensus 53 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~ 126 (199)
T 3l0i_B 53 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQ 126 (199)
T ss_dssp SBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---H---HHHHH
T ss_pred HhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHH
Confidence 344555667777777777777777766 578999999999998877888899999999999987542 1 12233
Q ss_pred HHHHHHHc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 81 HVMLAKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 81 ~~~~~~~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
++..+... ++| +++|+||+|+.... ... .++...+....+ ++++++||++|.|++++
T Consensus 127 ~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~--~v~----~~~~~~~~~~~~------~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 127 WLQEIDRYASENVN-KLLVGNKCDLTTKK--VVD----YTTAKEFADSLG------IPFLETSAKNATNVEQS 186 (199)
T ss_dssp HHHHHHSCC-CCSE-EEEC-CCSSCC--C--CCC----SCC-CHHHHTTT------CCBCCCCC---HHHHHH
T ss_pred HHHHHHHhccCCCC-EEEEEECccCCccc--cCC----HHHHHHHHHHcC------CeEEEEECCCCCCHHHH
Confidence 33444433 566 88999999984211 000 011223334433 46899999999999984
No 124
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=1.4e-10 Score=100.15 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=71.7
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH-----cCCCeEEEEEecCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDH 103 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~-----~~i~~~ivviNK~D~~ 103 (383)
...+.||||||+++|.......++.+|++++|+|++.... ++ ....++..+.. .++| +++|+||+|+.
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~ 127 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS---LE---ELGPIYKLIVQIKGSVEDIP-VMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH---HH---TTHHHHHHHHHHHSCGGGSC-EEEEEECTTCS
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccCC
Confidence 4578999999999998888888999999999999987432 11 22333333333 2567 89999999994
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
...... ++...+....+ ++++++||++|.|++++.
T Consensus 128 ~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 128 QREVDT-------REAQAVAQEWK------CAFMETSAKMNYNVKELF 162 (199)
T ss_dssp SCSSCH-------HHHHHHHHHHT------CEEEECBTTTTBSHHHHH
T ss_pred ccccCH-------HHHHHHHHHhC------CeEEEEecCCCCCHHHHH
Confidence 322221 11222333333 379999999999999854
No 125
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.16 E-value=4e-11 Score=104.24 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=73.6
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch-HHHHHHHHHc--CCCeEEEEEecCCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~-~~~~~~~~~~--~i~~~ivviNK~D~~~~~ 106 (383)
..+.||||||+++|.......++.+|++++|+|++.... ++ .. ..++..+... ++| +++|+||+|+...
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 144 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRQD- 144 (201)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHSTTCC-EEEEEECGGGTTC-
T ss_pred EEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEecHHhhcC-
Confidence 478999999999998777788899999999999987431 11 11 2344445444 777 8999999999432
Q ss_pred ccHHHHHHH---------HHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 107 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 107 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
....+.+ .++...+.+.+++ .+++++||++|.|++++.
T Consensus 145 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~ 191 (201)
T 2gco_A 145 --EHTRRELAKMKQEPVRSEEGRDMANRISA-----FGYLECSAKTKEGVREVF 191 (201)
T ss_dssp --HHHHHHHHTTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred --ccchhhhcccccCcCCHHHHHHHHHhCCC-----cEEEEeeCCCCCCHHHHH
Confidence 1111111 1234445555553 279999999999999854
No 126
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.16 E-value=1.6e-10 Score=100.29 Aligned_cols=111 Identities=18% Similarity=0.105 Sum_probs=75.3
Q ss_pred eeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEE
Q 016750 23 AHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLV 96 (383)
Q Consensus 23 ~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivv 96 (383)
..+..++ ..+.||||||+++|.......++.+|++++|+|++.... ++ ....++..+.. .++| +++|
T Consensus 53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv 125 (206)
T 2bov_A 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLV 125 (206)
T ss_dssp EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCCC-EEEE
T ss_pred EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEE
Confidence 3344444 478999999999999888889999999999999987432 11 22233333333 2677 8999
Q ss_pred EecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 97 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 97 iNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+||+|+. +..+.. .+++..+++..+ .+++++||++|.|++++.+
T Consensus 126 ~nK~Dl~--~~~~~~----~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 126 GNKSDLE--DKRQVS----VEEAKNRAEQWN------VNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EECTTCG--GGCCSC----HHHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred EeccCcc--cccccc----HHHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 9999993 211111 122333444443 3799999999999999654
No 127
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.16 E-value=6.2e-11 Score=100.50 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=77.1
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChH--------HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~--------~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
..|+|.+.....+..++..+.+|||||++++. ..+...++.+|++++|+|++.... ....+++..
T Consensus 35 ~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s-------~~~~~~~~~ 107 (172)
T 2gj8_A 35 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA-------VDPAEIWPE 107 (172)
T ss_dssp STTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC-------CSHHHHCHH
T ss_pred CCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHH
Confidence 35778777777788888899999999987641 123346789999999999987653 223344444
Q ss_pred HHHc---CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 85 AKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 85 ~~~~---~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+... ++| +++|+||+|+...... +.+. ...+++++||++|.|++++.
T Consensus 108 ~~~~~~~~~p-~ilv~NK~Dl~~~~~~-------------~~~~------~~~~~~~~SA~~g~gv~~l~ 157 (172)
T 2gj8_A 108 FIARLPAKLP-ITVVRNKADITGETLG-------------MSEV------NGHALIRLSARTGEGVDVLR 157 (172)
T ss_dssp HHHHSCTTCC-EEEEEECHHHHCCCCE-------------EEEE------TTEEEEECCTTTCTTHHHHH
T ss_pred HHHhcccCCC-EEEEEECccCCcchhh-------------hhhc------cCCceEEEeCCCCCCHHHHH
Confidence 4433 577 8899999998221000 0000 13589999999999999854
No 128
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.16 E-value=1.1e-10 Score=114.93 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=83.6
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCC-ChH--------HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHK-SYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~-~~~--------~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
..|+|.|.....+..++..+.||||||+. ++. ..+...+..+|++|+|+|++.+.. .+..+.+.
T Consensus 274 ~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~il~ 346 (482)
T 1xzp_A 274 IPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD-------EEDRKILE 346 (482)
T ss_dssp SSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC-------HHHHHHHH
T ss_pred CCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC-------HHHHHHHH
Confidence 35899999999999999999999999998 552 456678899999999999987642 23344444
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+ .++| +|+|+||+|+... .+ .+ ++..++ +. ..+++++||++|+|++++.+
T Consensus 347 ~l--~~~p-iivV~NK~DL~~~-~~---~~----~~~~~~---~~----~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 347 RI--KNKR-YLVVINKVDVVEK-IN---EE----EIKNKL---GT----DRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp HH--TTSS-EEEEEEECSSCCC-CC---HH----HHHHHH---TC----STTEEEEEGGGTCCHHHHHH
T ss_pred Hh--cCCC-EEEEEECcccccc-cC---HH----HHHHHh---cC----CCcEEEEECCCCCCHHHHHH
Confidence 43 3677 8999999999431 11 11 222222 11 24799999999999999654
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.16 E-value=2.9e-11 Score=118.74 Aligned_cols=117 Identities=22% Similarity=0.317 Sum_probs=80.0
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCC--------CCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPG--------HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG--------~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
+...|+|.+.....+++.+..+++||||| ++.+...+..++..+|++|+|+|+..+.. ..+.+.+
T Consensus 52 ~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-------~~d~~l~ 124 (456)
T 4dcu_A 52 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVA 124 (456)
T ss_dssp ---------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-------HHHHHHH
T ss_pred CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-------hHHHHHH
Confidence 34569999999999999999999999999 55666777888999999999999988763 4666777
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
..++..++| +++|+||+|+ .+ .+ ....++ ..+++. ..+++||.+|.|+.++.
T Consensus 125 ~~l~~~~~p-vilV~NK~D~--~~---~~-----~~~~e~-~~lg~~-----~~~~iSA~~g~gv~~L~ 176 (456)
T 4dcu_A 125 KILYRTKKP-VVLAVNKLDN--TE---MR-----ANIYDF-YSLGFG-----EPYPISGTHGLGLGDLL 176 (456)
T ss_dssp HHHTTCCSC-EEEEEECC-------------------CCS-GGGSSS-----SEEECCTTTCTTHHHHH
T ss_pred HHHHHcCCC-EEEEEECccc--hh---hh-----hhHHHH-HHcCCC-----ceEEeecccccchHHHH
Confidence 788888888 8999999998 32 00 111111 233432 56799999999999853
No 130
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.15 E-value=9.6e-11 Score=98.86 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=63.3
Q ss_pred CcEEEEEeCCCCCCh--HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc----CCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSY--VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~--~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~----~i~~~ivviNK~D~ 102 (383)
...+.+|||||+..+ .......++.+|++++|+|+++... ++ ...+++..+... ++| +++|+||+|+
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl 123 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS---FE---SASELRIQLRRTHQADHVP-IILVGNKADL 123 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH---HH---HHHHHHHHHHHCC----CC-EEEEEECTTC
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhccCCCC-EEEEEEChhh
Confidence 347899999999884 3333456678999999999987431 11 223344444443 677 8999999999
Q ss_pred CCCC-ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 103 HTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 103 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.... .+. ++...+....+ .+++++||++|.|++++.+
T Consensus 124 ~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 124 ARCREVSV-------EEGRACAVVFD------CKFIETSATLQHNVAELFE 161 (175)
T ss_dssp TTTCCSCH-------HHHHHHHHHHT------SEEEECBTTTTBSHHHHHH
T ss_pred ccccccCH-------HHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Confidence 4321 111 11222333333 4799999999999998643
No 131
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.15 E-value=2.1e-10 Score=98.47 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=62.0
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~~ 105 (383)
..+.||||||+.+|...+...+..+|++++|+|+++... + .....++..+.. .++| +++++||+|+...
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~ 141 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS---F---ADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTR 141 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCC
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcc
Confidence 458999999999998888888999999999999987532 1 122233333333 2677 8999999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.... +++..+.+..+ ++++++||++|.|+.++.+
T Consensus 142 ~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 142 TVDT-------KQAHELAKSYG------IPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp CSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 1111 22333444444 3699999999999998543
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.15 E-value=4.6e-11 Score=105.43 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=80.9
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCC
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVT 91 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~ 91 (383)
.|+|.......+...+..+.||||||+++|.......++.+|++++|+|++.... ++ ....++..+... ++|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p 121 (221)
T 3gj0_A 48 LGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCENIP 121 (221)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTCC
T ss_pred cceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC
Confidence 3566665555555566789999999999988777888899999999999987542 11 223333444332 677
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+++|+||+|+....... +...+.+..+ .+++++||++|.|+.++.+
T Consensus 122 -~ilv~nK~Dl~~~~~~~--------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 122 -IVLCGNKVDIKDRKVKA--------KSIVFHRKKN------LQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp -EEEEEECTTSSSCSSCG--------GGCCHHHHHT------CEEEECBGGGTBTTTHHHH
T ss_pred -EEEEEECCccccccccH--------HHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 89999999994322111 1112223333 4799999999999998643
No 133
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.15 E-value=3.9e-11 Score=102.78 Aligned_cols=118 Identities=25% Similarity=0.289 Sum_probs=81.2
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChH------HHHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYV------PNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~------~~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
...|+|++.....+.+++..+.+|||||+.+|. ......+. .+|++++|+|+... .....++.
T Consensus 36 ~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~ 106 (188)
T 2wjg_A 36 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTL 106 (188)
T ss_dssp ECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHH
T ss_pred CCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHH
Confidence 345788888888888889999999999998873 11223333 49999999998752 24455566
Q ss_pred HHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+...++| ++++.||+|+.... .+......+.+.++ .+++++||++|.|++++.+
T Consensus 107 ~~~~~~~p-iilv~nK~Dl~~~~-------~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 107 QLMEMGAN-LLLALNKMDLAKSL-------GIEIDVDKLEKILG------VKVVPLSAAKKMGIEELKK 161 (188)
T ss_dssp HHHTTTCC-EEEEEECHHHHHHT-------TCCCCHHHHHHHHT------SCEEECBGGGTBSHHHHHH
T ss_pred HHHhcCCC-EEEEEEhhhccccc-------cchHHHHHHHHHhC------CCeEEEEecCCCCHHHHHH
Confidence 66667888 88999999982110 01112233333333 3799999999999998543
No 134
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.14 E-value=2.9e-11 Score=106.39 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=71.1
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCCCeEEEEEecCCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i~~~ivviNK~D~~~~~ 106 (383)
..+.||||||++++.......+..+|++|+|+|++++.. ++ ...+++..+.. .++| +++|+||+|+...
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 132 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT---CQ---NLARWVKEFQAVVGNEAP-IVVCANKIDIKNR- 132 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCSSSC-EEEEEECTTCC---
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCccc-
Confidence 579999999999887777778889999999999998643 11 22233333333 2577 8999999999321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.....+....+.+.. ..+++++||++|.|++++.+
T Consensus 133 -----~~~~~~~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 133 -----QKISKKLVMEVLKGK------NYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp -------CCHHHHHHHTTTC------CCEEEEEBTTTTBTTTHHHH
T ss_pred -----cccCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 011122233344433 35799999999999999654
No 135
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.14 E-value=6.9e-11 Score=100.78 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=72.5
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
...+.||||||+++|.......++.+|++++|+|++.+.. ++ ... .++..+... ++| +++++||+|+ .
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl--~ 122 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDL--R 122 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHSTTSC-EEEEEECHHH--H
T ss_pred EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh---HH---HHHHHHHHHHHHhCCCCC-EEEEeEcccc--c
Confidence 3466799999999998777788899999999999987532 11 122 234444443 677 8999999998 3
Q ss_pred CccHHHHHHH---------HHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+. ....+.+ .++...+.+..++ .+++++||++|.|++++.
T Consensus 123 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 123 DD-KDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 171 (186)
T ss_dssp TC-HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred cc-chhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEecCCCccCHHHHH
Confidence 21 1111111 1233344455443 379999999999999853
No 136
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.14 E-value=9.5e-12 Score=105.99 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=71.5
Q ss_pred eeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH----HHcCCCeEEEEE
Q 016750 24 HFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVV 97 (383)
Q Consensus 24 ~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~----~~~~i~~~ivvi 97 (383)
.+..++ ..+.||||||+++|.......++.+|++++|+|+++... ++ ....++..+ ...++| +++|+
T Consensus 46 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~ 118 (181)
T 3t5g_A 46 LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKS---FE---VIKVIHGKLLDMVGKVQIP-IMLVG 118 (181)
T ss_dssp EEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHC----CC-EEEEE
T ss_pred EEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEE
Confidence 344444 567999999999997777778889999999999987432 11 112222222 233677 89999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
||+|+.... .. ..++...+.+..+ .+++++||++|.|++++.+
T Consensus 119 nK~Dl~~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 119 NKKDLHMER--VI----SYEEGKALAESWN------AAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp ECTTCTTTC--CS----CHHHHHHHHHHTT------CEEEECCTTSHHHHHHHHH
T ss_pred ECccchhcc--ee----cHHHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Confidence 999983211 11 1123344455544 4799999999999999644
No 137
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.13 E-value=9.2e-11 Score=98.46 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=69.4
Q ss_pred cceeeccceeeeecC--cEEEEEeCCCCCChHH-HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc---
Q 016750 15 GKTVEVGRAHFETET--TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--- 88 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~-~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--- 88 (383)
..|.+.....+..++ ..+.+|||||++++.. .....++.+|++++|+|++.... ++ ...+.+..+...
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~ 107 (169)
T 3q85_A 34 ENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPH 107 (169)
T ss_dssp ----CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTT
T ss_pred CCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHH---HH---HHHHHHHHHHhcccC
Confidence 344444444444544 5678999999998876 33445778999999999987432 21 233344433332
Q ss_pred -CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 89 -GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 89 -~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
++| +++++||+|+.... + ...++...+.+..+ .+++++||++|.|++++.
T Consensus 108 ~~~p-~ilv~nK~Dl~~~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 158 (169)
T 3q85_A 108 HDLP-VILVGNKSDLARSR--E----VSLEEGRHLAGTLS------CKHIETSAALHHNTRELF 158 (169)
T ss_dssp SCCC-EEEEEECTTCGGGC--C----SCHHHHHHHHHHTT------CEEEECBTTTTBSHHHHH
T ss_pred CCCC-EEEEeeCcchhhcc--c----CCHHHHHHHHHHcC------CcEEEecCccCCCHHHHH
Confidence 677 88999999983211 1 11122333444444 479999999999999854
No 138
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=8.5e-11 Score=102.65 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=72.5
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc--CCCeEEEEEecCCCCCCCc
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNW 107 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~--~i~~~ivviNK~D~~~~~~ 107 (383)
..+.||||||+++|.......++.+|++++|+|++.... ++ .....++..+... ++| +++|+||+|+ .+.
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl--~~~ 144 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDS---LE--NIPEKWVPEVKHFCPNVP-IILVANKKDL--RSD 144 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHH---HH--HHHHTHHHHHHHHSTTCC-EEEEEECGGG--GGC
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEchhh--hcc
Confidence 578999999999998877888899999999999987431 11 1112334444444 777 8999999999 321
Q ss_pred cHHHHHHH---------HHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 108 SKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 108 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....+.+ .++...+....++ .+++++||++|.|++++.+
T Consensus 145 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 145 -EHVRTELARMKQEPVRTDDGRAMAVRIQA-----YDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp -HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred -ccchhhhhhcccCCCCHHHHHHHHHhcCC-----CEEEEeeCCCCCCHHHHHH
Confidence 1111111 1122334444442 2799999999999998543
No 139
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.12 E-value=5.3e-11 Score=102.71 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=73.5
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch-HHHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~-~~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
...+.||||||+++|.......++.+|++++|+|+++... ++ .. ..++..+... ++| +++|+||+|+...
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS---FD---NISTKWEPEIKHYIDTAK-TVLVGLKVDLRKD 142 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTSE-EEEEEECGGGCCT
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccC
Confidence 3456999999999998888888999999999999987532 11 11 2233344433 566 8999999998421
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+.. ....++...+.+..++. .++++||++|.|++++.+
T Consensus 143 ~~~----~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~ 180 (194)
T 3reg_A 143 GSD----DVTKQEGDDLCQKLGCV-----AYIEASSVAKIGLNEVFE 180 (194)
T ss_dssp TTT----CCCHHHHHHHHHHHTCS-----CEEECBTTTTBSHHHHHH
T ss_pred CCC----cccHHHHHHHHHhcCCC-----EEEEeecCCCCCHHHHHH
Confidence 100 11123344455555543 499999999999999543
No 140
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.12 E-value=6.5e-11 Score=100.69 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=70.0
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
...+.||||||+++|...+...++.+|++++|+|+++... ++ ... .++..+... ++| +++++||+|+ .
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl--~ 125 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVSKKWIPELKHYAPGVP-IVLVGTKLDL--R 125 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCC-EEEEEECHHH--H
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEechhh--h
Confidence 4556799999999998888888999999999999987532 11 111 233444442 677 8999999998 3
Q ss_pred CccHHHHH-------HHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 106 NWSKERYD-------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+... ... ...++...+.+..++ .+++++||++|.|++++.
T Consensus 126 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 172 (182)
T 3bwd_D 126 DDKQ-FFIDHPGAVPITTVQGEELKKLIGA-----PAYIECSSKSQENVKGVF 172 (182)
T ss_dssp TCHH-HHHHC--CCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred cCcc-cccccccCCCCCHHHHHHHHHHcCC-----CEEEEEECCCCCCHHHHH
Confidence 2111 000 012333444555543 279999999999999853
No 141
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.11 E-value=3.9e-11 Score=104.25 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=71.1
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCeEEEEEecCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDD 102 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~~ivviNK~D~ 102 (383)
.....+.||||||+++|...+...++.+|++++|+|++.... ++ .....+..+. ..++| +++|+||+|+
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 141 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS---FQ---VIESLYQKLHEGHGKTRVP-VVLVGNKADL 141 (201)
T ss_dssp --CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHH---HH---HHHHHHHHHHC-----CCC-EEEEEECTTC
T ss_pred CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccC
Confidence 356778999999999998888888999999999999987432 11 2222333332 23677 8999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.... +.. ..+...+.+..+ .+++++||++|.|++++.+
T Consensus 142 ~~~~--~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 142 SPER--EVQ----AVEGKKLAESWG------ATFMESSARENQLTQGIFT 179 (201)
T ss_dssp GGGC--CSC----HHHHHHHHHHHT------CEEEECCTTCHHHHHHHHH
T ss_pred cccc--ccC----HHHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 3211 101 112233334443 4799999999999999644
No 142
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.11 E-value=8.5e-11 Score=100.18 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=72.8
Q ss_pred eeeecCc--EEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH----HcCCCeEEEEE
Q 016750 24 HFETETT--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVV 97 (383)
Q Consensus 24 ~~~~~~~--~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~----~~~i~~~ivvi 97 (383)
.+..++. .+.+|||||+++|.......++.+|++++|+|++++.. ++ ....++..+. ..++| +++|+
T Consensus 58 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~ 130 (183)
T 3kkq_A 58 HTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKAS---FE---HVDRFHQLILRVKDRESFP-MILVA 130 (183)
T ss_dssp EEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTSSCCC-EEEEE
T ss_pred EEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEE
Confidence 3344444 45679999999998888888999999999999987532 11 2223333332 24677 89999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccc-ccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 151 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~-~g~~i~~~~ 151 (383)
||+|+.... +. ..++...+.+..+ .+++++||+ +|.|++++.
T Consensus 131 nK~Dl~~~~--~v----~~~~~~~~~~~~~------~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 131 NKVDLMHLR--KV----TRDQGKEMATKYN------IPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp ECTTCSTTC--CS----CHHHHHHHHHHHT------CCEEEEBCSSSCBSHHHHH
T ss_pred ECCCchhcc--Cc----CHHHHHHHHHHhC------CeEEEeccCCCCCCHHHHH
Confidence 999984211 11 1122334444444 369999999 999999854
No 143
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.11 E-value=1.6e-10 Score=114.67 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=81.9
Q ss_pred ceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCC
Q 016750 16 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVT 91 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~ 91 (383)
.|++..+..+++++..+.||||||+++|...+..+++.+|++|+|+|+++... |+ ...+.+..+.. .++|
T Consensus 352 ~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p 425 (497)
T 3lvq_E 352 PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---ID---EARQELHRIINDREMRDAI 425 (497)
T ss_dssp CCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTSGGGTTCE
T ss_pred CccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH---HH---HHHHHHHHHhhhhhcCCCc
Confidence 36666677788889999999999999998888889999999999999987531 11 12222222222 3677
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 92 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 92 ~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+|+|+||+|+.... + ..+ +...+... +.....++++++||++|+|++++++
T Consensus 426 -~ilv~NK~Dl~~~~-~---~~~----~~~~~~~~-~~~~~~~~~~~~SA~~g~gi~~l~~ 476 (497)
T 3lvq_E 426 -ILIFANKQDLPDAM-K---PHE----IQEKLGLT-RIRDRNWYVQPSCATSGDGLYEGLT 476 (497)
T ss_dssp -EEEEEECCSSSSCC-C---HHH----HHHHTTCT-TCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred -EEEEEECCCCCcCC-C---HHH----HHHHhchh-hhhcCCeEEEEEECCCCCCHHHHHH
Confidence 89999999994321 1 112 22222111 1112246799999999999999543
No 144
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.11 E-value=8.9e-11 Score=102.74 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=72.2
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEEecCCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivviNK~D~~~~~ 106 (383)
..+.||||||+++|...+..+++.+|++|+|+|+++... ++ ... .++..+... ++| +++|+||+|+ .+
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl--~~ 127 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS---YE---NVLKKWMPELRRFAPNVP-IVLVGTKLDL--RD 127 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCC-EEEEEECHHH--HT
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeCHHh--hh
Confidence 588999999999998877888999999999999987532 11 111 334444443 677 8999999998 32
Q ss_pred ccHHHHH-----HHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYD-----EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. ..... ...++...+.+.+++ .+++++||++|.|++++.+
T Consensus 128 ~-~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 172 (212)
T 2j0v_A 128 D-KGYLADHTNVITSTQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 172 (212)
T ss_dssp C-HHHHHTCSSCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred C-ccccccccCCCCHHHHHHHHHHcCC-----ceEEEccCCCCCCHHHHHH
Confidence 1 11000 012334445555553 3799999999999998643
No 145
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.10 E-value=7.3e-11 Score=100.10 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=72.7
Q ss_pred eeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH-H---HcCCCeEEEEE
Q 016750 24 HFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVV 97 (383)
Q Consensus 24 ~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~---~~~i~~~ivvi 97 (383)
.+..++ ..+.||||||+++|.......++.+|++++|+|++.... ++ ....++..+ . ..++| +++++
T Consensus 49 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~ 121 (181)
T 2fn4_A 49 ICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQS---FN---EVGKLFTQILRVKDRDDFP-VVLVG 121 (181)
T ss_dssp EEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHTSSCCC-EEEEE
T ss_pred EEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEE
Confidence 344444 578899999999998888888899999999999987431 11 222222222 2 23677 89999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
||+|+... .+-. .++...+....+ .+++++||++|.|++++.+
T Consensus 122 nK~Dl~~~--~~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 122 NKADLESQ--RQVP----RSEASAFGASHH------VAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp ECGGGGGG--CCSC----HHHHHHHHHHTT------CEEEECBTTTTBSHHHHHH
T ss_pred ECcccccc--cccC----HHHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Confidence 99998321 1000 112223333333 4799999999999998644
No 146
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.10 E-value=1.8e-10 Score=96.32 Aligned_cols=107 Identities=17% Similarity=0.082 Sum_probs=59.1
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 102 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~ 102 (383)
.....+.+|||||+++|.......++.+|++++|+|+++... ++ ....++..+.. .++| +++|+||+|+
T Consensus 46 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 118 (166)
T 3q72_A 46 GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS---FE---KASELRVQLRRARQTDDVP-IILVGNKSDL 118 (166)
T ss_dssp TEEEEEEEEECC---------------CCEEEEEEETTCHHH---HH---HHHHHHHHHHHCC---CCC-EEEEEECTTC
T ss_pred CEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEecccc
Confidence 345678899999999998888888899999999999987532 11 22334444433 3677 8899999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.... +.. .++...+....+ .+++++||++|.|++++.+
T Consensus 119 ~~~~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 119 VRSR--EVS----VDEGRACAVVFD------CKFIETSAALHHNVQALFE 156 (166)
T ss_dssp CSSC--CSC----HHHHHHHHHHTT------CEEEECBGGGTBSHHHHHH
T ss_pred cccc--ccC----HHHHHHHHHHhC------CcEEEeccCCCCCHHHHHH
Confidence 4321 111 111223333333 4799999999999998543
No 147
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.09 E-value=2.3e-10 Score=100.47 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=59.6
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEEecCCCCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivviNK~D~~~~~ 106 (383)
..+.||||||+++|.......++.+|++++|+|+++... ++ ... .++..+... ++| +++|+||+|+ .+
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl--~~ 152 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS---FD---NIFNRWYPEVNHFCKKVP-IIVVGCKTDL--RK 152 (214)
T ss_dssp EEEEEEEC---------------CEEEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECGGG--GS
T ss_pred EEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhh--hc
Confidence 478999999999998888888899999999999987532 11 111 233334332 677 8999999999 32
Q ss_pred ccHHHHHHH---------HHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. ....+.+ .++...+.+.+++ .+++++||++|.|++++.+
T Consensus 153 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 153 D-KSLVNKLRRNGLEPVTYHRGQEMARSVGA-----VAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp C-HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECBTTTTBSHHHHHH
T ss_pred c-chhhhhhcccccCcccHHHHHHHHHhcCC-----CEEEEecCCCCCCHHHHHH
Confidence 1 1111110 1234455555553 2799999999999998543
No 148
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.08 E-value=7.5e-11 Score=106.92 Aligned_cols=124 Identities=14% Similarity=0.097 Sum_probs=79.9
Q ss_pred cceeeccceeeeecCcEEEEEeCCCCCCh-----------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 15 GKTVEVGRAHFETETTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~~~i~liDtPG~~~~-----------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
++|++.....+.+++++++||||||+.++ ...+..+++.+|++|+|+|++. . ..+....+.
T Consensus 56 ~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~-------~~~~~~~~~ 127 (260)
T 2xtp_A 56 TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-Y-------TSQDQQAAQ 127 (260)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-C-------CHHHHHHHH
T ss_pred ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-C-------CHHHHHHHH
Confidence 47777777788889999999999998765 2233346678999999999985 2 145556666
Q ss_pred HHHHc-----CCCeEEEEEe-cCCCCCCCccHHHHHHHH----HHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 84 LAKTL-----GVTKLLLVVN-KMDDHTVNWSKERYDEIE----SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 84 ~~~~~-----~i~~~ivviN-K~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+... +.| .|+++| |+|+...+ .. ..+. +++...++.++-... .+..+++||++|.|+.++.+
T Consensus 128 ~l~~~~~~~~~~~-~i~vv~nK~Dl~~~~--~~--~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA~~~~gv~~l~~ 200 (260)
T 2xtp_A 128 RVKEIFGEDAMGH-TIVLFTHKEDLNGGS--LM--DYMHDSDNKALSKLVAACGGRIC-AFNNRAEGSNQDDQVKELMD 200 (260)
T ss_dssp HHHHHHCGGGGGG-EEEEEECGGGGTTCC--HH--HHHHHCCCHHHHHHHHHTTTCEE-ECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCchhhcc-EEEEEEcccccCCcc--HH--HHHHhcchHHHHHHHHHhCCeEE-EecCcccccccHHHHHHHHH
Confidence 66665 566 566777 99994321 11 1111 223344444432100 01117899999999998644
No 149
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.05 E-value=6.7e-10 Score=96.19 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=74.6
Q ss_pred eeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEE
Q 016750 23 AHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVV 97 (383)
Q Consensus 23 ~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivvi 97 (383)
..+..++ ..+.||||||+++|.......+..+|++++|+|+++... ++ ... .++..+... ++| +++|+
T Consensus 59 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~ 131 (201)
T 2q3h_A 59 AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS---FQ---NVSEKWVPEIRCHCPKAP-IILVG 131 (201)
T ss_dssp EEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSSC-EEEEE
T ss_pred EEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEE
Confidence 3445555 367799999999987777778889999999999987532 11 111 233334433 677 89999
Q ss_pred ecCCCCCCCccHHHHHH---------HHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
||+|+. +. ...... ..++...+.+..++ .+++++||++|.|++++.+
T Consensus 132 nK~Dl~--~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 132 TQSDLR--ED-VKVLIELDKCKEKPVPEEAAKLLAEEIKA-----ASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp ECGGGG--GC-HHHHHHHHTTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred ECHhhh--hc-hhhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEEecCCCCCHHHHHH
Confidence 999983 21 010000 11233444444443 3799999999999998543
No 150
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.61 E-value=2.2e-11 Score=106.08 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=71.8
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--CCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~i~~~ivviNK~D~~~~ 105 (383)
...+.||||||+++|.......++.+|++++|+|++++.. ++ ... .++..+... ++| +++|+||+|+...
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~ 149 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 149 (204)
Confidence 3456699999999998888888999999999999987642 11 222 333344433 677 8899999999321
Q ss_pred CccHHHH------HHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 106 NWSKERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....+.. ....++...+.+..++ .+++++||++|.|++++.+
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 197 (204)
Confidence 1000000 0111222333333332 2789999999999998654
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.03 E-value=8.3e-10 Score=99.36 Aligned_cols=121 Identities=9% Similarity=0.047 Sum_probs=80.3
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCC--------CChHHHHHHhh----hhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGH--------KSYVPNMISGA----SQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~--------~~~~~~~~~~~----~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
.|+|.+.....+.+++..++||||||+ +++...+..++ ..+|++|+|+|++. .. ..+...
T Consensus 54 ~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~-------~~~~~~ 125 (247)
T 3lxw_A 54 TSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FT-------AQDQQA 125 (247)
T ss_dssp ---CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CC-------HHHHHH
T ss_pred CCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CC-------HHHHHH
Confidence 468888888888899999999999998 56666666665 89999999999974 21 345556
Q ss_pred HHHHHHc------CCCeEEEEEecCCCCCCCccHHHHHHH--HHHHHHHHHhcCCCCCCCceEEEccccc-----ccccc
Q 016750 82 VMLAKTL------GVTKLLLVVNKMDDHTVNWSKERYDEI--ESKMTPFLKASGYNVKKDVQFLPISGLM-----GLNMK 148 (383)
Q Consensus 82 ~~~~~~~------~i~~~ivviNK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~iSa~~-----g~~i~ 148 (383)
+..+... +.| +|++.||+|+...+ ...+-.. .+.+..+++.++. .++++++.. +.|+.
T Consensus 126 ~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~~--~~~~l~~~~~~~l~~l~~~~g~------~~~~~~~~~~~~~~~~~v~ 196 (247)
T 3lxw_A 126 VRQVRDMFGEDVLKWM-VIVFTRKEDLAGGS--LHDYVSNTENRALRELVAECGG------RVCAFDNRATGREQEAQVE 196 (247)
T ss_dssp HHHHHHHHCGGGGGGE-EEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHHHTTT------CEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHhChhhhccE-EEEEEchHhcCCCC--HHHHHhhcccHHHHHHHHHcCC------eEEEEeCCCCccccHHHHH
Confidence 6666654 566 88999999994322 1211111 1346677777663 344454333 57888
Q ss_pred ccc
Q 016750 149 TRV 151 (383)
Q Consensus 149 ~~~ 151 (383)
+++
T Consensus 197 ~Ll 199 (247)
T 3lxw_A 197 QLL 199 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.02 E-value=1.2e-09 Score=99.89 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=68.5
Q ss_pred hhcceeeccceeeeecCc--EEEEEeCCCCCCh-------HHHH-------HHhhhh-------------cCEEEEEEEC
Q 016750 13 IKGKTVEVGRAHFETETT--RFTILDAPGHKSY-------VPNM-------ISGASQ-------------ADIGVLVISA 63 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~--~i~liDtPG~~~~-------~~~~-------~~~~~~-------------ad~~ilvvda 63 (383)
..+++++.....+..++. .+++|||||+.++ .... ..++.. +|+++++++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 556666666666666554 8999999998433 1111 222332 7899999976
Q ss_pred CC-CccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccc
Q 016750 64 RK-GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 142 (383)
Q Consensus 64 ~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~ 142 (383)
.. +.. ..+.+.+..+.. ++| +|+|+||+|+ .. .......++.+.+.+...+ ++++++|+.
T Consensus 126 ~~~~~~-------~~d~~~l~~l~~-~~p-vi~V~nK~D~--~~--~~e~~~~~~~i~~~l~~~~------i~v~~~sa~ 186 (274)
T 3t5d_A 126 SGHGLK-------PLDIEFMKRLHE-KVN-IIPLIAKADT--LT--PEECQQFKKQIMKEIQEHK------IKIYEFPET 186 (274)
T ss_dssp CCSSCC-------HHHHHHHHHHTT-TSC-EEEEESSGGG--SC--HHHHHHHHHHHHHHHHHTT------CCCCCC---
T ss_pred CCCCCC-------HHHHHHHHHHhc-cCC-EEEEEeccCC--CC--HHHHHHHHHHHHHHHHHcC------CeEEcCCCC
Confidence 65 332 455666666665 787 8999999998 42 4455566666777776654 468889999
Q ss_pred ccccccccc
Q 016750 143 MGLNMKTRV 151 (383)
Q Consensus 143 ~g~~i~~~~ 151 (383)
+++|+.++.
T Consensus 187 ~~~~~~~l~ 195 (274)
T 3t5d_A 187 DDEEENKLV 195 (274)
T ss_dssp --------C
T ss_pred CChhHHHHH
Confidence 999998853
No 153
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.01 E-value=5.4e-10 Score=98.20 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=75.2
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCc-hHHHHHHHHHc--CCCeEEEEEecCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQ-TREHVMLAKTL--GVTKLLLVVNKMDDHT 104 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~-~~~~~~~~~~~--~i~~~ivviNK~D~~~ 104 (383)
....+.||||||+++|.......++.+|++|+|+|+++... ++ . ...++..+... ++| +++|.||+|+..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 145 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD---SALKKWRTEILDYCPSTR-VLLIGCKTDLRT 145 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH---HH---HHHTHHHHHHHHHCTTSE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 45678999999999998877888999999999999987542 11 1 23344445444 666 889999999932
Q ss_pred CCccHHHH---------HHHHHHHHHHHHhcCCCCCCCceEEEcccccccc-cccccc
Q 016750 105 VNWSKERY---------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~-i~~~~~ 152 (383)
. .... ....++...+.+..++. +++++||++|.| ++++.+
T Consensus 146 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~e~SA~~g~g~v~~lf~ 195 (214)
T 3q3j_B 146 D---LSTLMELSHQKQAPISYEQGCAIAKQLGAE-----IYLEGSAFTSEKSIHSIFR 195 (214)
T ss_dssp C---HHHHHHHHHTTCCCCCHHHHHHHHHHHTCS-----EEEECCTTTCHHHHHHHHH
T ss_pred c---hhhhhhhcccccCccCHHHHHHHHHHcCCC-----EEEEeccCCCcccHHHHHH
Confidence 1 0000 01123344455555532 799999999998 998643
No 154
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=1.7e-09 Score=93.29 Aligned_cols=104 Identities=20% Similarity=0.143 Sum_probs=69.1
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~~~ 104 (383)
...+.||||||+++ .......++.+|++++|+|+++... ++ ....++..+.. .++| +++++||+|+..
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~ 146 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGS---FE---EVLPLKNILDEIKKPKNVT-LILVGNKADLDH 146 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhhCCCCCc-EEEEEECccccc
Confidence 46789999999988 5566777889999999999987432 11 22333333332 4677 899999999832
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccc-ccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~-~i~~~~~ 152 (383)
. .+... ++...+.+..+ ++++++||++|. |+.++.+
T Consensus 147 ~--~~v~~----~~~~~~~~~~~------~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 147 S--RQVST----EEGEKLATELA------CAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp G--CCSCH----HHHHHHHHHHT------SEEEECCTTTCTTCHHHHHH
T ss_pred c--cccCH----HHHHHHHHHhC------CeEEEECCCcCCcCHHHHHH
Confidence 1 11011 12223333333 479999999999 9998643
No 155
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.97 E-value=7e-10 Score=103.78 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=78.8
Q ss_pred cceeeccceeeeecCcE--EEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchH-HHHHHHHHc--C
Q 016750 15 GKTVEVGRAHFETETTR--FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--G 89 (383)
Q Consensus 15 G~Ti~~~~~~~~~~~~~--i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~-~~~~~~~~~--~ 89 (383)
+++.+.....+..++.. +.||||||+++|.......++.+|++++|+|++++.. ++ ... .++..+... +
T Consensus 186 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~ 259 (332)
T 2wkq_A 186 PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---FH---HVRAKWYPEVRHHCPN 259 (332)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTT
T ss_pred CcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhCCC
Confidence 34444444445555544 5599999999998888888999999999999987542 11 111 233444444 6
Q ss_pred CCeEEEEEecCCCCCCCccHHHHHHH---------HHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 90 VTKLLLVVNKMDDHTVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 90 i~~~ivviNK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+| +++|+||+|+... ....+.. .++...+.+..++ .+++++||++|.|++++.
T Consensus 260 ~p-~ilv~nK~Dl~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 321 (332)
T 2wkq_A 260 TP-IILVGTKLDLRDD---KDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 321 (332)
T ss_dssp SC-EEEEEECHHHHTC---HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred Cc-EEEEEEchhcccc---cchhhhccccccccccHHHHHHHHHHcCC-----cEEEEecCCCCcCHHHHH
Confidence 77 8999999998321 1111111 2234445555543 279999999999999853
No 156
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.97 E-value=3.6e-10 Score=97.02 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=66.0
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH------cCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~------~~i~~~ivviNK~D~ 102 (383)
...+.||||||+++|.. +...++.+|++++|+|+++... |+ ....++..+.. .++| +++|.||+|+
T Consensus 68 ~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 139 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQS---FD---SSSSYLELLALHAKETQRSIP-ALLLGNKLDM 139 (187)
T ss_dssp EEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECGGG
T ss_pred EEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhhccCCCCC-EEEEEECcch
Confidence 45788999999988765 3567889999999999986431 11 22333333333 3777 8999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccc-cccccccccc
Q 016750 103 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG-LMGLNMKTRV 151 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa-~~g~~i~~~~ 151 (383)
.... +. ..++...+.+..+ ++++++|| ++|.|++++.
T Consensus 140 ~~~~--~v----~~~~~~~~~~~~~------~~~~e~Sa~~~g~gv~~lf 177 (187)
T 3c5c_A 140 AQYR--QV----TKAEGVALAGRFG------CLFFEVSACLDFEHVQHVF 177 (187)
T ss_dssp GGGC--SS----CHHHHHHHHHHHT------CEEEECCSSSCSHHHHHHH
T ss_pred hhcC--cc----CHHHHHHHHHHcC------CcEEEEeecCccccHHHHH
Confidence 3211 00 1122333444444 37999999 8999999854
No 157
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.97 E-value=9.3e-10 Score=94.00 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=71.6
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch-HHHHHHHHH--cCCCeEEEEEecCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~-~~~~~~~~~--~~i~~~ivviNK~D~~~ 104 (383)
....+.||||||+++|.......++.+|++++|+|++.... ++ .. ..++..+.. .++| ++++.||+|+.
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~- 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLR- 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGG-
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEEcchhh-
Confidence 34678999999999987777778899999999999987432 11 11 122333433 2566 89999999993
Q ss_pred CCccHHHHHH---------HHHHHHHHHHhcCCCCCCCceEEEcccc-ccccccccc
Q 016750 105 VNWSKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 151 (383)
Q Consensus 105 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~iSa~-~g~~i~~~~ 151 (383)
+. .....+ ..++...+.+.++. .+++++||+ +|.|++++.
T Consensus 125 -~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~gi~~l~ 174 (184)
T 1m7b_A 125 -TD-VSTLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIF 174 (184)
T ss_dssp -GC-HHHHHHHHTTTCCCCCHHHHHHHHHHHTC-----SEEEECBTTTBHHHHHHHH
T ss_pred -cc-hhhHhhhhhcccCCCCHHHHHHHHHHcCC-----cEEEEeeecCCCcCHHHHH
Confidence 21 111111 01234445555442 479999998 689999854
No 158
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.96 E-value=4.9e-10 Score=105.43 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=78.4
Q ss_pred hcceeeccceeeeecC-cEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFETET-TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~-~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
..+|.+.....+.+++ ..+.|+||||+.+ +....++.+..+|++|+|+|++.......+ .+...++..+
T Consensus 189 ~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~---~~~~~~~~eL 265 (342)
T 1lnz_A 189 HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY---DDYLTINQEL 265 (342)
T ss_dssp TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH---HHHHHHHHHH
T ss_pred CccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH---HHHHHHHHHH
Confidence 3577777777777765 8999999999532 445566677789999999999762100001 1233344555
Q ss_pred HHc-----CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KTL-----GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~~-----~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
... ++| +++|+||+|+ .+ .+ + .+..+.+.+.. ..+++++||++++|++++.+
T Consensus 266 ~~~~~~l~~~p-~ilV~NK~Dl--~~---~~--e---~~~~l~~~l~~----~~~v~~iSA~tg~gi~eL~~ 322 (342)
T 1lnz_A 266 SEYNLRLTERP-QIIVANKMDM--PE---AA--E---NLEAFKEKLTD----DYPVFPISAVTREGLRELLF 322 (342)
T ss_dssp HHSCSSTTTSC-BCBEEECTTS--TT---HH--H---HHHHHHHHCCS----CCCBCCCSSCCSSTTHHHHH
T ss_pred HHhhhhhcCCC-EEEEEECccC--CC---CH--H---HHHHHHHHhhc----CCCEEEEECCCCcCHHHHHH
Confidence 542 567 7899999999 32 11 1 12222333321 14789999999999999644
No 159
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.95 E-value=1.5e-09 Score=92.82 Aligned_cols=131 Identities=19% Similarity=0.271 Sum_probs=74.1
Q ss_pred CHHHHhhcceeeccceeeeecCcEEEEEeCCCC-----------CChHHHHHHh----hhhcCEEEEEEECCCCccc-cc
Q 016750 8 NEEERIKGKTVEVGRAHFETETTRFTILDAPGH-----------KSYVPNMISG----ASQADIGVLVISARKGEFE-TG 71 (383)
Q Consensus 8 ~~~E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~-----------~~~~~~~~~~----~~~ad~~ilvvda~~g~~~-~~ 71 (383)
.+.+...|+|.+.....+ + .+.+|||||+ +.|...+... +..+++++.|+|+.....- ..
T Consensus 26 ~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~ 101 (190)
T 2cxx_A 26 VRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKR 101 (190)
T ss_dssp CSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHH
T ss_pred CccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHh
Confidence 333445577765544333 2 7899999994 3443333333 4457788888887542100 00
Q ss_pred cc---cCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCC-CCceEEEccccccccc
Q 016750 72 FE---KGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK-KDVQFLPISGLMGLNM 147 (383)
Q Consensus 72 ~~---~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iSa~~g~~i 147 (383)
+. ...++.+.+..+...++| +++|+||+|+. +. + .+.+..+.+.+++... ...+++++||++|.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~--~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 171 (190)
T 2cxx_A 102 WEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKI--KN---V----QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNI 171 (190)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGC--SC---H----HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTH
T ss_pred hhccCccHHHHHHHHHHHhcCCc-eEEEeehHhcc--Cc---H----HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCH
Confidence 00 002234455566667888 89999999993 21 1 1223333444443200 0135899999999999
Q ss_pred ccccc
Q 016750 148 KTRVD 152 (383)
Q Consensus 148 ~~~~~ 152 (383)
+++.+
T Consensus 172 ~~l~~ 176 (190)
T 2cxx_A 172 ERLKN 176 (190)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98543
No 160
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.95 E-value=1.2e-09 Score=93.44 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=70.0
Q ss_pred eeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEE
Q 016750 24 HFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVV 97 (383)
Q Consensus 24 ~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivvi 97 (383)
.+..++ ..+.||||||+++|. .++.+|++++|+|+++... |+ ....++..+.. .++| ++++.
T Consensus 59 ~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~ 126 (184)
T 3ihw_A 59 EIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEIS---FQ---TVYNYFLRLCSFRNASEVP-MVLVG 126 (184)
T ss_dssp EEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHTTSCGGGSC-EEEEE
T ss_pred EEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEE
Confidence 444555 456789999999887 6778999999999987542 11 22334444443 3567 88999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
||+|+...+... ...++...+.+.++ ..+++++||++|.|++++.+
T Consensus 127 nK~Dl~~~~~~~----v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 127 TQDAISAANPRV----IDDSRARKLSTDLK-----RCTYYETCATYGLNVERVFQ 172 (184)
T ss_dssp ECTTCBTTBCCC----SCHHHHHHHHHHTT-----TCEEEEEBTTTTBTHHHHHH
T ss_pred ECcccccccccc----cCHHHHHHHHHHcC-----CCeEEEecCCCCCCHHHHHH
Confidence 999983111000 01123344455544 24799999999999998543
No 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.94 E-value=3.7e-10 Score=110.51 Aligned_cols=113 Identities=20% Similarity=0.176 Sum_probs=72.1
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCChHH--------HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~--------~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.|+|.|.....+..++..+.||||||+.++.. .+...+..+|++++|+|++.+.. .+..+++..+
T Consensus 256 ~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~-------~~~~~i~~~l 328 (462)
T 3geh_A 256 PGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWT-------TGDQEIYEQV 328 (462)
T ss_dssp TTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSC-------HHHHHHHHHH
T ss_pred CCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCC-------HHHHHHHHhc
Confidence 58899988888899999999999999876532 23446778999999999998652 2334444444
Q ss_pred HHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 86 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 86 ~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. ..| +++|+||+|+.... . .. .++.+. ...+++++||++|.|++++.+
T Consensus 329 ~--~~p-iivV~NK~Dl~~~~--~--~~--------~~~~~~----~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 329 K--HRP-LILVMNKIDLVEKQ--L--IT--------SLEYPE----NITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp T--TSC-EEEEEECTTSSCGG--G--ST--------TCCCCT----TCCCEEEEBTTTTBSHHHHHH
T ss_pred c--CCc-EEEEEECCCCCcch--h--hH--------HHHHhc----cCCcEEEEECCCCCCHHHHHH
Confidence 3 356 88999999994321 1 00 111111 135799999999999998643
No 162
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.94 E-value=1.9e-09 Score=93.16 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=76.2
Q ss_pred hcceeeccceeeeecC--cEEEEEeCCCCCChHH-HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---
Q 016750 14 KGKTVEVGRAHFETET--TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--- 87 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~-~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--- 87 (383)
.+++.+.....+..++ ..+.+|||||++++.. .....++.+|++|+|+|+++... |+ ...+++..+..
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~ 127 (195)
T 3cbq_A 54 PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRP 127 (195)
T ss_dssp TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHST
T ss_pred CCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcC
Confidence 3455554444455554 4678899999988765 33456778999999999987432 11 23334444433
Q ss_pred -cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 88 -LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 88 -~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.++| +++|.||+|+.... +-.. ++...+.+..+ .+++++||++|.|++++.+
T Consensus 128 ~~~~p-iilv~nK~Dl~~~~--~v~~----~~~~~~a~~~~------~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 128 HHDLP-VILVGNKSDLARSR--EVSL----EEGRHLAGTLS------CKHIETSAALHHNTRELFE 180 (195)
T ss_dssp TSCCC-EEEEEECTTCTTTC--CSCH----HHHHHHHHHTT------CEEEEEBTTTTBSHHHHHH
T ss_pred CCCCC-EEEEeechhccccC--CcCH----HHHHHHHHHhC------CEEEEEcCCCCCCHHHHHH
Confidence 3677 89999999994211 1011 22233444443 3799999999999999543
No 163
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.93 E-value=8.6e-10 Score=102.34 Aligned_cols=128 Identities=14% Similarity=0.171 Sum_probs=77.7
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCChHH---HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH--c
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--L 88 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~---~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--~ 88 (383)
-+.|+...+..+. ....+.+|||||+++|.. ....+++.++++|+|+|+++. +...+ ....+.+..+.. -
T Consensus 31 ~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~---~~l~~~l~~~~~~~~ 105 (331)
T 3r7w_B 31 LESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAI---TNLAMIIEYAYKVNP 105 (331)
T ss_dssp CCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHH---HHHHHHHHHHHHHCT
T ss_pred ecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHH---HHHHHHHHHHhhcCC
Confidence 4667776666553 347899999999999964 346778999999999999886 31111 011222333322 2
Q ss_pred CCCeEEEEEecCCCCCCCccHHH---HHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKER---YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++| ++++.||+|+ .+. ..+ ...+..+..+.+...++. ..+++|+.+||++ .|+.+...
T Consensus 106 ~ip-illvgNK~DL--~~~-~~R~~~~R~V~~~~~~~la~~~~~-~~~i~f~eTSAkd-~nV~eAFs 166 (331)
T 3r7w_B 106 SIN-IEVLIHKVDG--LSE-DFKVDAQRDIMQRTGEELLELGLD-GVQVSFYLTSIFD-HSIYEAFS 166 (331)
T ss_dssp TCE-EEEECCCCCS--SCS-HHHHHHHHHHHHHHHHTTSSSSCS-CCCEEEECCCSSS-SHHHHHHH
T ss_pred CCc-EEEEEECccc--Cch-hhhhhHHHHhhHHHHHHHHhhccc-ccCceEEEeccCC-CcHHHHHH
Confidence 576 8899999999 421 122 122333222222222111 1247899999997 58877543
No 164
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.93 E-value=1e-09 Score=93.02 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=64.0
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH------cCCCeEEEEEecCCCC
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDH 103 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~------~~i~~~ivviNK~D~~ 103 (383)
..+.||||||+++ ...++.+|++++|+|+++... ++ ....++..+.. .++| +++|.||+|+.
T Consensus 54 ~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~ 121 (178)
T 2iwr_A 54 HLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENS---FQ---AVSRLHGQLSSLRGEGRGGLA-LALVGTQDRIS 121 (178)
T ss_dssp EEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCB
T ss_pred EEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 5678999999987 345778999999999987532 11 22222223333 2566 89999999983
Q ss_pred CCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 104 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
......... +++..+.+..+ ..+++++||++|.|++++.+
T Consensus 122 ~~~~~~v~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~ 161 (178)
T 2iwr_A 122 ASSPRVVGD----ARARALXADMK-----RCSYYETXATYGLNVDRVFQ 161 (178)
T ss_dssp TTBCCCSCH----HHHHHHHHHHS-----SEEEEEEBTTTTBTHHHHHH
T ss_pred ccccCcCCH----HHHHHHHHhhc-----CCeEEEEeccccCCHHHHHH
Confidence 111000011 22233333332 35899999999999998643
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.92 E-value=2.4e-09 Score=101.70 Aligned_cols=127 Identities=18% Similarity=0.157 Sum_probs=77.7
Q ss_pred HHhhcceeeccceeeeecCcEEEEEeCCCCCC-----h---HHHHHHhhhhcCEEEEEEECCCCc--cccccccCCchHH
Q 016750 11 ERIKGKTVEVGRAHFETETTRFTILDAPGHKS-----Y---VPNMISGASQADIGVLVISARKGE--FETGFEKGGQTRE 80 (383)
Q Consensus 11 E~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~-----~---~~~~~~~~~~ad~~ilvvda~~g~--~~~~~~~~~~~~~ 80 (383)
+...+.|+|.....+.+++..+.++||||+.. + ...+...+..+|++++|+|++.+. .+ .+...
T Consensus 207 ~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~------~~~~~ 280 (364)
T 2qtf_A 207 DTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI------ETLQS 280 (364)
T ss_dssp -------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH------HHHHH
T ss_pred cCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH------HHHHH
Confidence 34568899988888999899999999999722 1 234556788999999999998753 11 12222
Q ss_pred HHHHHHH---cCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 81 HVMLAKT---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 81 ~~~~~~~---~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....+.. .++| +|+|.||+|+... .. ....+.+..+...+... ..+++++||++|.|++++.+
T Consensus 281 ~~~~L~~l~~~~~p-~ilV~NK~Dl~~~--~~---~~~~~~~~~l~~~l~~~---~~~~~~~SA~~g~gi~~L~~ 346 (364)
T 2qtf_A 281 SFEILREIGVSGKP-ILVTLNKIDKING--DL---YKKLDLVEKLSKELYSP---IFDVIPISALKRTNLELLRD 346 (364)
T ss_dssp HHHHHHHHTCCSCC-EEEEEECGGGCCS--CH---HHHHHHHHHHHHHHCSC---EEEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHhCcCCCC-EEEEEECCCCCCc--hH---HHHHHHHHHHHHHhcCC---CCcEEEEECCCCcCHHHHHH
Confidence 2334444 3566 8899999999322 11 11122222222332111 34689999999999998543
No 166
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.92 E-value=1.7e-09 Score=94.45 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=71.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCch-HHHHHHHHH--cCCCeEEEEEecCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~-~~~~~~~~~--~~i~~~ivviNK~D~~~~ 105 (383)
...+.||||||+++|.......++.+|++|+|+|++.... ++ .. ..++..+.. .++| +++|.||+|+ .
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl--~ 145 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDL--R 145 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGG--G
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEechhh--c
Confidence 4678999999999987777778899999999999987432 11 11 223333443 2566 8999999999 3
Q ss_pred CccHHHHHH---------HHHHHHHHHHhcCCCCCCCceEEEcccc-ccccccccc
Q 016750 106 NWSKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~iSa~-~g~~i~~~~ 151 (383)
+. .....+ ..++...+.+.++. .+++++||+ +|.|++++.
T Consensus 146 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~SAk~~~~gv~~lf 195 (205)
T 1gwn_A 146 TD-VSTLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIF 195 (205)
T ss_dssp GC-HHHHHHHHTTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCHHHHHHHH
T ss_pred cc-hhhhhhhcccccCCCCHHHHHHHHHHcCC-----CEEEEeeeccCCcCHHHHH
Confidence 21 111111 11234445555442 379999999 689999854
No 167
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.89 E-value=2.2e-09 Score=94.19 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=60.3
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhh----cCEEEEEEECC-CCccccccccCCchHHHHHHH-HH------cCCCeEEE
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISAR-KGEFETGFEKGGQTREHVMLA-KT------LGVTKLLL 95 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~----ad~~ilvvda~-~g~~~~~~~~~~~~~~~~~~~-~~------~~i~~~iv 95 (383)
....+.+|||||+++|...+...++. +|++|+|+|++ .... +. ...+++..+ .. .++| +++
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~il 125 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---LT---TTAEFLVDILSITESSCENGID-ILI 125 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTC---CH---HHHHHHHHHHHHHHHHSTTCCC-EEE
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHH---HH---HHHHHHHHHHhcccccccCCCC-EEE
Confidence 56789999999999998777777766 99999999998 3211 11 222333222 21 3677 899
Q ss_pred EEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccc
Q 016750 96 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 147 (383)
Q Consensus 96 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i 147 (383)
++||+|+..........+.+.+++..+.... ..+++++||++|.+-
T Consensus 126 v~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 126 ACNKSELFTARPPSKIKDALESEIQKVIERR------KKSLNEVERKINEED 171 (218)
T ss_dssp EEECTTSTTCCCHHHHHHHHHHHHHHHHHHH------HHHHHC---------
T ss_pred EEEchHhcccCCHHHHHHHHHHHHHHHHHHH------hcccccccccccccc
Confidence 9999999543211222223333344443332 246889999998763
No 168
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.88 E-value=2.8e-09 Score=100.61 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=87.6
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCcc-------ccccccCCchHHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF-------ETGFEKGGQTREHVMLA 85 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~-------~~~~~~~~~~~~~~~~~ 85 (383)
.|..|+.+....++.++..+.+|||+|++.|.+.+...++.++++|+|+|.++--. ...+ ......+..+
T Consensus 176 ~~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~---~e~~~~~~~i 252 (353)
T 1cip_A 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM---HESMKLFDSI 252 (353)
T ss_dssp CCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHH---HHHHHHHHHH
T ss_pred ccCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhH---HHHHHHHHHH
Confidence 35667777777788889999999999999999999999999999999999986210 0000 1222333333
Q ss_pred HH----cCCCeEEEEEecCCCCCCCcc-------------HHHHHHHHHHHHHHHHhcCCC-CCCCceEEEccccccccc
Q 016750 86 KT----LGVTKLLLVVNKMDDHTVNWS-------------KERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNM 147 (383)
Q Consensus 86 ~~----~~i~~~ivviNK~D~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iSa~~g~~i 147 (383)
.. .++| +|++.||+|+...... ....++..+.+...+..+.-. ....+.++++||++|.|+
T Consensus 253 ~~~~~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV 331 (353)
T 1cip_A 253 CNNKWFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331 (353)
T ss_dssp HTCGGGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred HcCccccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhH
Confidence 22 2566 9999999998210000 001234444444333333211 012568899999999999
Q ss_pred ccccc
Q 016750 148 KTRVD 152 (383)
Q Consensus 148 ~~~~~ 152 (383)
.+.++
T Consensus 332 ~~vF~ 336 (353)
T 1cip_A 332 QFVFD 336 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98543
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.86 E-value=2.4e-09 Score=98.83 Aligned_cols=107 Identities=12% Similarity=0.030 Sum_probs=67.8
Q ss_pred CcEEEEEeCCCCC-------------ChHHHHHHhhhhcCEEE-EEEECCCCccccccccCCchH-HHHHHHHHcCCCeE
Q 016750 29 TTRFTILDAPGHK-------------SYVPNMISGASQADIGV-LVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 93 (383)
Q Consensus 29 ~~~i~liDtPG~~-------------~~~~~~~~~~~~ad~~i-lvvda~~g~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 93 (383)
...++||||||+. .+...+..+++.+|.++ +|+|++.+.. .+.. .++..+...+.| +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhHHHHHHHHhCCCCCe-E
Confidence 4789999999964 23445566777888776 6999988753 3332 455666556787 8
Q ss_pred EEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 94 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 94 ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++|+||+|+.... .. ..+.+...+..+.. ...+++++||++|.|++++.+
T Consensus 196 i~V~NK~Dl~~~~--~~----~~~~~~~~~~~~~~---~~~~v~~~SA~~~~gi~~l~~ 245 (299)
T 2aka_B 196 IGVITKLDLMDEG--TD----ARDVLENKLLPLRR---GYIGVVNRSQKDIDGKKDITA 245 (299)
T ss_dssp EEEEECGGGSCTT--CC----CHHHHTTCSSCCTT---CEEECCCCCCBCTTSCBCHHH
T ss_pred EEEEEccccCCCC--ch----HHHHHhCCcCcCCC---CcEEEECCChhhccccccHHH
Confidence 9999999993221 10 11112111111110 124789999999999998643
No 170
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.82 E-value=4.2e-09 Score=90.00 Aligned_cols=112 Identities=11% Similarity=0.142 Sum_probs=68.6
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH--cCCCeEEEEEecCCCCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~--~~i~~~ivviNK~D~~~~ 105 (383)
....+.+|||||+++|.......++.+|++++|+|.+.+.. .++ ....++..+.. .++| +++|.||+|+ .
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--s~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl--~ 125 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQA--EVD---AMKPWLFNIKARASSSP-VILVGTHLDV--S 125 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHH--HHH---THHHHHHHHHHHCTTCE-EEEEEECGGG--C
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchh--HHH---HHHHHHHHHHhhCCCCc-EEEEEECCCc--c
Confidence 45688999999998887666667788999999999987521 011 22333433333 2566 8889999999 3
Q ss_pred CccHHHHHHH-HHHHHHHHHhcCCCCCCCceEEEccccccc-cccccc
Q 016750 106 NWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRV 151 (383)
Q Consensus 106 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~-~i~~~~ 151 (383)
+ +...... .+....+.+..++. ...+++++||++|. |+.++.
T Consensus 126 ~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~~~~~l~ 169 (184)
T 2zej_A 126 D--EKQRKACMSKITKELLNKRGFP--AIRDYHFVNATEESDALAKLR 169 (184)
T ss_dssp C--HHHHHHHHHHHHHHTTTCTTSC--EEEEEEECCTTSCCHHHHHHH
T ss_pred c--chhhHHHHHHHHHHHHHhcCCc--chhheEEEecccCchhHHHHH
Confidence 2 1111111 12223333333332 01248999999996 888853
No 171
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.82 E-value=7.7e-09 Score=92.34 Aligned_cols=123 Identities=11% Similarity=0.123 Sum_probs=70.8
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCC-----------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 81 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~-----------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~ 81 (383)
.+++|.+.....+.+++..++||||||+.+ +...+......+|++|+|+|++... ....+.
T Consensus 61 ~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~ 132 (239)
T 3lxx_A 61 AKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKA 132 (239)
T ss_dssp ----CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHH
T ss_pred CCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHH
Confidence 347888888888889999999999999654 3333444455789999999987432 334444
Q ss_pred HHHHH-----HcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccc-----ccccccc
Q 016750 82 VMLAK-----TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-----GLNMKTR 150 (383)
Q Consensus 82 ~~~~~-----~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~-----g~~i~~~ 150 (383)
+..+. ....| +++++||+|+.....-++......+.+..+++.++. .+++++... ..++.++
T Consensus 133 l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~------~~~~~~~~~~~~~~~~~v~~l 204 (239)
T 3lxx_A 133 TEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD------RYCALNNKATGAEQEAQRAQL 204 (239)
T ss_dssp HHHHHHHHHHHHGGG-EEEEEECGGGC------------CHHHHHHHHHHSS------SEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC------EEEEEECCCCccccHHHHHHH
Confidence 44332 23346 889999999832110001111112346666666653 456665543 2566663
No 172
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.81 E-value=3e-09 Score=106.49 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=71.3
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC--CCeEEEEEecCCCCCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~--i~~~ivviNK~D~~~~~ 106 (383)
+..+.+|||||++.|.......++.+|++|+|+|++.. .....++..+...+ +| +|+|+||+|+....
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---------~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---------SNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSY 166 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---------GGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTC
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---------hhHHHHHHHHHHhCCCCC-EEEEEECCCccccc
Confidence 67899999999999887777778899999999999764 24556666676655 77 88999999994321
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+. ..+++...+...+ .+++++||++|.|++++.+
T Consensus 167 --~v----~~~~~~~~~~~~~------~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 167 --NI----EQKKINERFPAIE------NRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp --CC----CHHHHHHHCGGGT------TCEEECCC-----CTTHHH
T ss_pred --cc----CHHHHHHHHHhcC------CceEEEecCcccCHHHHHH
Confidence 10 1233444555544 3699999999999998754
No 173
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.77 E-value=3.8e-08 Score=93.34 Aligned_cols=120 Identities=20% Similarity=0.318 Sum_probs=75.6
Q ss_pred hcceeeccceeeeecCcEEEEEeCCCCCChH--------HHHHHhh-hhcCEEEEEEECCCCccccccccCCchHHHHHH
Q 016750 14 KGKTVEVGRAHFETETTRFTILDAPGHKSYV--------PNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVML 84 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~--------~~~~~~~-~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~ 84 (383)
.+.|.+.....+..++..+.+|||||+.++. .....++ ..+|.+++|+|++.+. +++. ....+.+..
T Consensus 198 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~-~~~~~~~~~ 273 (357)
T 2e87_A 198 PFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPL-EEQIHLFEE 273 (357)
T ss_dssp TTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCH-HHHHHHHHH
T ss_pred CCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCH-HHHHHHHHH
Confidence 4566666666666778889999999986531 1223333 3699999999987642 0110 112233333
Q ss_pred HHH-c-CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 85 AKT-L-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 85 ~~~-~-~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+.. . ++| +|+|+||+|+ .+ .... +++...++..+ .+++++||++|+|++++.+
T Consensus 274 i~~~~~~~p-iilV~NK~Dl--~~--~~~~----~~~~~~~~~~~------~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 274 VHGEFKDLP-FLVVINKIDV--AD--EENI----KRLEKFVKEKG------LNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp HHHHTTTSC-EEEEECCTTT--CC--HHHH----HHHHHHHHHTT------CCCEECBTTTTBTHHHHHH
T ss_pred HHHhcCCCC-EEEEEECccc--CC--hHHH----HHHHHHHHhcC------CCeEEEeCCCCcCHHHHHH
Confidence 333 3 677 8999999999 32 2222 22333343332 4799999999999999654
No 174
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.77 E-value=4.4e-09 Score=97.90 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=55.8
Q ss_pred cceeeccceeeee-cCcEEEEEeCCCCCC-------------hHHHHHHhhhhcCEEEEEEEC-CCCccccccccCCch-
Q 016750 15 GKTVEVGRAHFET-ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISA-RKGEFETGFEKGGQT- 78 (383)
Q Consensus 15 G~Ti~~~~~~~~~-~~~~i~liDtPG~~~-------------~~~~~~~~~~~ad~~ilvvda-~~g~~~~~~~~~~~~- 78 (383)
|++.+.....+.. ++.+++||||||+.+ +...+..++..+|++++|+|+ +.+.. .+.
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~-------~~~~ 187 (315)
T 1jwy_B 115 GISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-------NSDA 187 (315)
T ss_dssp -CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST-------TCSH
T ss_pred CccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh-------hhHH
Confidence 4444443333322 457899999999864 455667788999999999997 44432 233
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCC
Q 016750 79 REHVMLAKTLGVTKLLLVVNKMDDH 103 (383)
Q Consensus 79 ~~~~~~~~~~~i~~~ivviNK~D~~ 103 (383)
...+..+...+.| +++|+||+|+.
T Consensus 188 ~~i~~~~~~~~~~-~i~v~NK~Dl~ 211 (315)
T 1jwy_B 188 LQLAKEVDPEGKR-TIGVITKLDLM 211 (315)
T ss_dssp HHHHHHHCSSCSS-EEEEEECTTSS
T ss_pred HHHHHHhCCCCCc-EEEEEcCcccC
Confidence 3566667667888 88999999994
No 175
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.76 E-value=9.7e-09 Score=97.29 Aligned_cols=137 Identities=11% Similarity=0.155 Sum_probs=79.2
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCc---cc----cccccCCchHHHHHH
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FE----TGFEKGGQTREHVML 84 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~---~~----~~~~~~~~~~~~~~~ 84 (383)
+.|..|+.+....++.++..+.+|||||++.|.+.+...++.++++|+|+|.++-- .| ..+ ......+..
T Consensus 183 ~~r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~---~es~~~~~~ 259 (362)
T 1zcb_A 183 LARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRL---TESLNIFET 259 (362)
T ss_dssp HCCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHH---HHHHHHHHH
T ss_pred hccCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHH---HHHHHHHHH
Confidence 34556776667778888999999999999999999999999999999999998620 00 000 112233333
Q ss_pred HHH----cCCCeEEEEEecCCCCCCC------------c--cHHHHHHHHHHHHHHHHhcCCCC-CCCceEEEccccccc
Q 016750 85 AKT----LGVTKLLLVVNKMDDHTVN------------W--SKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGL 145 (383)
Q Consensus 85 ~~~----~~i~~~ivviNK~D~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iSa~~g~ 145 (383)
+.. .++| +|++.||+|+.... + ....+++..+.+...+..+.-.. ...+.++++||++|.
T Consensus 260 i~~~~~~~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~ 338 (362)
T 1zcb_A 260 IVNNRVFSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE 338 (362)
T ss_dssp HHTCGGGTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH
T ss_pred HhcchhhCCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch
Confidence 322 2566 99999999983100 0 00112333333333332221100 124678899999999
Q ss_pred ccccccc
Q 016750 146 NMKTRVD 152 (383)
Q Consensus 146 ~i~~~~~ 152 (383)
|+.+.++
T Consensus 339 nV~~vF~ 345 (362)
T 1zcb_A 339 NIRLVFR 345 (362)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 9998643
No 176
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.75 E-value=9.2e-09 Score=96.96 Aligned_cols=107 Identities=17% Similarity=0.056 Sum_probs=67.4
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~ 106 (383)
++++.++||||||+.++... ....+|++++|+|+..+.. .+.... ...++| .++|+||+|+ .+
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~-------~~~l~~----~~~~~p-~ivv~NK~Dl--~~ 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD-------LQGIKK----GLMEVA-DLIVINKDDG--DN 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCT--TC
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH-------HHHHHH----hhhccc-CEEEEECCCC--CC
Confidence 56889999999999876543 3589999999999976531 111111 112456 6789999999 32
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCC-CCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVK-KDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iSa~~g~~i~~~~~ 152 (383)
...+....+++...+..++.... -..+++++||++|.|++++.+
T Consensus 209 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 253 (341)
T 2p67_A 209 --HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWH 253 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHH
Confidence 22344444556555554331000 023789999999999998654
No 177
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.71 E-value=1.3e-08 Score=89.28 Aligned_cols=110 Identities=18% Similarity=0.130 Sum_probs=66.4
Q ss_pred eeeeecCc--EEEEEeCCCCCChHHHH-HHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEE
Q 016750 23 AHFETETT--RFTILDAPGHKSYVPNM-ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLL 95 (383)
Q Consensus 23 ~~~~~~~~--~i~liDtPG~~~~~~~~-~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~iv 95 (383)
..+..++. ++.+|||+|.......+ ...++.+|++|+|+|.++... |+ ...+++..+.. .++| +|+
T Consensus 78 ~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s---f~---~~~~~~~~l~~~~~~~~~p-iil 150 (211)
T 2g3y_A 78 RTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IIL 150 (211)
T ss_dssp EEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH---HH---HHHHHHHHHHTSGGGTTSC-EEE
T ss_pred EEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCc-EEE
Confidence 33445544 56789999987732222 334567999999999986421 11 22233333332 2677 899
Q ss_pred EEecCCCCCCC-ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 96 VVNKMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 96 viNK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
|.||+|+.... ... ++...+....+ ++++++||++|.|++++++
T Consensus 151 VgNK~DL~~~r~v~~-------~e~~~~a~~~~------~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 151 VGNKSDLVRCREVSV-------SEGRACAVVFD------CKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp EEECTTCGGGCCSCH-------HHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred EEEChHHhcCceEeH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 99999983210 111 11122223333 4799999999999999644
No 178
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.71 E-value=6.3e-09 Score=96.94 Aligned_cols=136 Identities=11% Similarity=0.086 Sum_probs=88.8
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECC-------CCccccccccCCchHHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR-------KGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~-------~g~~~~~~~~~~~~~~~~~~~ 85 (383)
.|.-|+......++.++..+.+|||+|++.|.+.+...++.++++|+|+|.+ +......+ ......+..+
T Consensus 150 ~r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~---~es~~~~~~i 226 (327)
T 3ohm_A 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM---EESKALFRTI 226 (327)
T ss_dssp CCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHH---HHHHHHHHHH
T ss_pred ccCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHH---HHHHHHHHHH
Confidence 3667777777788889999999999999999999999999999999999876 21110000 0122233322
Q ss_pred HH----cCCCeEEEEEecCCCCCCCc--------------cHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccc
Q 016750 86 KT----LGVTKLLLVVNKMDDHTVNW--------------SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 147 (383)
Q Consensus 86 ~~----~~i~~~ivviNK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i 147 (383)
.. .++| ++++.||+|+..... ....+++..+.+...+..+.-.....+.+..+||+++.|+
T Consensus 227 ~~~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 227 ITYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp HTSGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHH
T ss_pred hhhhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHH
Confidence 22 2466 899999999821000 0012344555555555544322233567788999999999
Q ss_pred ccccc
Q 016750 148 KTRVD 152 (383)
Q Consensus 148 ~~~~~ 152 (383)
.....
T Consensus 306 ~~vF~ 310 (327)
T 3ohm_A 306 RFVFA 310 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98543
No 179
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.68 E-value=2.1e-08 Score=95.02 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=69.8
Q ss_pred eecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 016750 26 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 26 ~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~ 105 (383)
+..+..+.||||||...- ....+..+|++++|+|+..+... +... . ....+| .++|+||+|+ .
T Consensus 168 ~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~-------~~l~--~--~~~~~p-~ivVlNK~Dl--~ 230 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQL-------QGIK--K--GVLELA-DIVVVNKADG--E 230 (355)
T ss_dssp HHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTT-------TTCC--T--TSGGGC-SEEEEECCCG--G
T ss_pred hhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccH-------HHHH--H--hHhhcC-CEEEEECCCC--c
Confidence 456789999999996543 23345889999999998765421 1110 0 112346 6789999998 3
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCC-CceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYNVKK-DVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~iSa~~g~~i~~~~~ 152 (383)
+ +.......+++...+...+..... ..+++++||++|+|++++.+
T Consensus 231 ~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 231 H--HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp G--HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred C--hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 2 234445556666665544311000 24799999999999999654
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.66 E-value=3.2e-08 Score=89.67 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=57.5
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChHHH---HHHhhh------hcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPN---MISGAS------QADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~---~~~~~~------~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
..++|++.....+.+++..++||||||+.+|... ....+. .+|++++|+|.+...+ .....+.+.
T Consensus 67 ~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~------~~~~~~~~~ 140 (262)
T 3def_A 67 FQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV------DELDKQVVI 140 (262)
T ss_dssp SCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC------CHHHHHHHH
T ss_pred CCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC------CHHHHHHHH
Confidence 4567888888888889999999999999876322 222222 7899999998876432 123345555
Q ss_pred HHHHc-C----CCeEEEEEecCCCC
Q 016750 84 LAKTL-G----VTKLLLVVNKMDDH 103 (383)
Q Consensus 84 ~~~~~-~----i~~~ivviNK~D~~ 103 (383)
.+... + .| +++++||+|+.
T Consensus 141 ~l~~~~~~~~~~~-~ivv~nK~Dl~ 164 (262)
T 3def_A 141 AITQTFGKEIWCK-TLLVLTHAQFS 164 (262)
T ss_dssp HHHHHHCGGGGGG-EEEEEECTTCC
T ss_pred HHHHHhchhhhcC-EEEEEeCcccC
Confidence 55543 3 25 88999999983
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.64 E-value=1e-07 Score=86.78 Aligned_cols=84 Identities=8% Similarity=0.001 Sum_probs=57.0
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCChH---HHHHHhh------hhcCEEEEEEECCCCccccccccCCchHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSYV---PNMISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVM 83 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~---~~~~~~~------~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~ 83 (383)
..|+|.+.....++.++..++||||||+.++. ......+ ..+|++|+|+|.+...+ . ....+.+.
T Consensus 70 ~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~----~--~~~~~~~~ 143 (270)
T 1h65_A 70 FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV----D--NLDKLVAK 143 (270)
T ss_dssp SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC----C--HHHHHHHH
T ss_pred CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC----C--HHHHHHHH
Confidence 35677777777778888999999999997653 2222222 36999999999865322 1 23445555
Q ss_pred HHHHc-C----CCeEEEEEecCCCC
Q 016750 84 LAKTL-G----VTKLLLVVNKMDDH 103 (383)
Q Consensus 84 ~~~~~-~----i~~~ivviNK~D~~ 103 (383)
.+... + .| +++|+||+|+.
T Consensus 144 ~l~~~~~~~~~~~-iivV~nK~Dl~ 167 (270)
T 1h65_A 144 AITDSFGKGIWNK-AIVALTHAQFS 167 (270)
T ss_dssp HHHHHHCGGGGGG-EEEEEECCSCC
T ss_pred HHHHHhCcccccC-EEEEEECcccC
Confidence 55433 4 45 89999999993
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.61 E-value=1.7e-07 Score=81.43 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=72.5
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCC----------hHHH---HHHhhhhcCEEEEEEECCCCccccccccCCchH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKS----------YVPN---MISGASQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~----------~~~~---~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
..|.|..... +.+++ .+.++||||+.. |... .......+|.+++++|+..+.. ....
T Consensus 58 ~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~ 127 (210)
T 1pui_A 58 TPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-------DLDQ 127 (210)
T ss_dssp -----CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHH
T ss_pred CCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-------hhHH
Confidence 4566655433 33333 688999999853 2222 2222357899999999987642 2233
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 80 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 80 ~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+...++...++| ++++.||+|+ .+ ..........+..++...+. ...++|+||+++.|+.++.
T Consensus 128 ~~~~~~~~~~~~-~~~v~nK~D~--~s--~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sal~~~~~~~l~ 190 (210)
T 1pui_A 128 QMIEWAVDSNIA-VLVLLTKADK--LA--SGARKAQLNMVREAVLAFNG----DVQVETFSSLKKQGVDKLR 190 (210)
T ss_dssp HHHHHHHHTTCC-EEEEEECGGG--SC--HHHHHHHHHHHHHHHGGGCS----CEEEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHcCCC-eEEEEecccC--CC--chhHHHHHHHHHHHHHhcCC----CCceEEEeecCCCCHHHHH
Confidence 455667778888 7788999998 32 22222223445555554432 2578999999999999854
No 183
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.60 E-value=5.4e-08 Score=90.99 Aligned_cols=140 Identities=18% Similarity=0.148 Sum_probs=87.5
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCC---cccc-ccccCCchHHHHHHHHH
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFET-GFEKGGQTREHVMLAKT 87 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g---~~~~-~~~~~~~~~~~~~~~~~ 87 (383)
+.|..|+.+....++.++..+.+|||+|++.|.+.+...++.++++|+|+|.++- ..|. ..+.-......+..+..
T Consensus 143 ~~~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 143 HNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp HSCCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred ecccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 4467788888888888999999999999999999999999999999999999720 0000 00000112233333322
Q ss_pred ----cCCCeEEEEEecCCCCCCCc-------------cHHHHHHHHHHHHHHH------HhcCCCCC-----------CC
Q 016750 88 ----LGVTKLLLVVNKMDDHTVNW-------------SKERYDEIESKMTPFL------KASGYNVK-----------KD 133 (383)
Q Consensus 88 ----~~i~~~ivviNK~D~~~~~~-------------~~~~~~~~~~~~~~~~------~~~~~~~~-----------~~ 133 (383)
.++| +|++.||+|+..... ....+++..+.+...+ ..+..... ..
T Consensus 223 ~~~~~~~p-iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (340)
T 4fid_A 223 NEFLKGAV-KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEK 301 (340)
T ss_dssp CGGGTTSE-EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CE
T ss_pred hhccCCCe-EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcc
Confidence 2566 899999999821000 0001334444454444 22222111 23
Q ss_pred ceEEEcccccccccccccc
Q 016750 134 VQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 134 ~~~i~iSa~~g~~i~~~~~ 152 (383)
+.+..+||+++.|+...+.
T Consensus 302 iy~h~TsA~dt~nv~~vF~ 320 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFM 320 (340)
T ss_dssp EEEEEECTTCHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHH
Confidence 6678899999999987543
No 184
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.59 E-value=2.5e-08 Score=102.32 Aligned_cols=121 Identities=12% Similarity=0.011 Sum_probs=74.1
Q ss_pred cceeeccceeeee-cCcEEEEEeCCCCCC-------------hHHHHHHhh-hhcCEEEEEEECCCCccccccccCCchH
Q 016750 15 GKTVEVGRAHFET-ETTRFTILDAPGHKS-------------YVPNMISGA-SQADIGVLVISARKGEFETGFEKGGQTR 79 (383)
Q Consensus 15 G~Ti~~~~~~~~~-~~~~i~liDtPG~~~-------------~~~~~~~~~-~~ad~~ilvvda~~g~~~~~~~~~~~~~ 79 (383)
|++-+.....+.. +..+++|+||||..+ +...+..++ ..+|++++|+|++.+.. .++.
T Consensus 134 ~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-------~~d~ 206 (772)
T 3zvr_A 134 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDA 206 (772)
T ss_dssp CCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-------SCHH
T ss_pred cccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-------hhHH
Confidence 4444443333333 355799999999654 122233344 47899999999998763 3454
Q ss_pred -HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 80 -EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 80 -~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
..+..+...+.| +|+|+||+|+ ++... .... +.. -+...+. ....+++++||++|.|++++.+
T Consensus 207 l~ll~~L~~~g~p-vIlVlNKiDl--v~~~~-~~~~----il~-~~~~~l~-lg~~~VV~iSA~~G~GvdeL~e 270 (772)
T 3zvr_A 207 LKIAKEVDPQGQR-TIGVITKLDL--MDEGT-DARD----VLE-NKLLPLR-RGYIGVVNRSQKDIDGKKDITA 270 (772)
T ss_dssp HHHHHHHCTTCSS-EEEEEECTTS--SCTTC-CSHH----HHT-TCSSCCS-SCEEECCCCCCEESSSSEEHHH
T ss_pred HHHHHHHHhcCCC-EEEEEeCccc--CCcch-hhHH----HHH-HHhhhhh-ccCCceEEecccccccchhHHH
Confidence 566777777888 8899999999 43111 1111 111 0001000 0124789999999999988754
No 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.58 E-value=6.4e-08 Score=89.56 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=70.3
Q ss_pred cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccH
Q 016750 30 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 109 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~ 109 (383)
..+.+||| +++|......+++.+|++|+|+|+++..+ .+ .....++..++..++| +++|+||+|+ .+ +
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~---~~l~~~l~~~~~~~~p-iilv~NK~DL--~~--~ 130 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST---YIIDKFLVLAEKNELE-TVMVINKMDL--YD--E 130 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGG--CC--H
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEeHHHc--CC--c
Confidence 37899999 88887777788999999999999987531 01 1223444555666887 8899999999 42 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 110 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
... +++.++++..+- . .+++++||++|.|++++.
T Consensus 131 ~~v----~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf 164 (301)
T 1u0l_A 131 DDL----RKVRELEEIYSG---L-YPIVKTSAKTGMGIEELK 164 (301)
T ss_dssp HHH----HHHHHHHHHHTT---T-SCEEECCTTTCTTHHHHH
T ss_pred hhH----HHHHHHHHHHhh---h-CcEEEEECCCCcCHHHHH
Confidence 111 223333333320 0 479999999999999864
No 186
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.58 E-value=6.7e-08 Score=83.16 Aligned_cols=118 Identities=17% Similarity=0.096 Sum_probs=67.0
Q ss_pred ceeeccceeeeecCc--EEEEEeCCCCCCh-HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----c
Q 016750 16 KTVEVGRAHFETETT--RFTILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----L 88 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~--~i~liDtPG~~~~-~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~ 88 (383)
++.+.....+..++. .+.+|||+|.... .......++.+|++++|+|.++... |+ ...+++..+.. .
T Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~---~~~~~~~~l~~~~~~~ 113 (192)
T 2cjw_A 40 LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTE 113 (192)
T ss_dssp GCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTTS
T ss_pred cceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCC
Confidence 333333344455554 5578999997652 1122335678999999999986431 11 22233333333 2
Q ss_pred CCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 89 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 89 ~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
++| +++|.||+|+ .+...-.. ++...+....+ .+++++||++|.|++++.+
T Consensus 114 ~~p-iilV~NK~Dl--~~~r~v~~----~~~~~~a~~~~------~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 114 DIP-IILVGNKSDL--VRXREVSV----SEGRAXAVVFD------XKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp CCC-EEEEEECTTC--GGGCCSCH----HHHHHHHHHTT------CEEEECBTTTTBSHHHHHH
T ss_pred CCe-EEEEEechhh--hccccccH----HHHHHHHHHhC------CceEEeccccCCCHHHHHH
Confidence 677 8999999998 32000001 11122222322 4799999999999999644
No 187
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.57 E-value=1e-07 Score=91.10 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=62.8
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCC--c-cc----cccccCCchHHHHHH
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG--E-FE----TGFEKGGQTREHVML 84 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g--~-~~----~~~~~~~~~~~~~~~ 84 (383)
+.|..|+.+....++.++..+.+|||+|++.|.+.+...++.++++|||+|.++- . .| ..| ......+..
T Consensus 199 ~~r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~---~e~~~~~~~ 275 (402)
T 1azs_C 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL---QEALNLFKS 275 (402)
T ss_dssp HCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH---HHHHHHHHH
T ss_pred ccccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchH---HHHHHHHHH
Confidence 3455677666777888889999999999999999999999999999999999860 0 00 001 122233333
Q ss_pred HHH----cCCCeEEEEEecCCC
Q 016750 85 AKT----LGVTKLLLVVNKMDD 102 (383)
Q Consensus 85 ~~~----~~i~~~ivviNK~D~ 102 (383)
+.. .++| +|++.||+|+
T Consensus 276 i~~~~~~~~~p-iiLvgNK~DL 296 (402)
T 1azs_C 276 IWNNRWLRTIS-VILFLNKQDL 296 (402)
T ss_dssp HHTCTTCSSCC-EEEEEECHHH
T ss_pred HHhcccCCCCe-EEEEEEChhh
Confidence 322 2466 8999999998
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.56 E-value=7.8e-08 Score=98.89 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=49.0
Q ss_pred cEEEEEeCCCCCC---hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHH-HHHHcCCCeEEEEEecCCC
Q 016750 30 TRFTILDAPGHKS---YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 30 ~~i~liDtPG~~~---~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~-~~~~~~i~~~ivviNK~D~ 102 (383)
..++||||||+.+ ....+..++..+|++|+|+|++.+.. ....+.+. .+...+.| +++|+||+|+
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-------~~e~~~l~~~l~~~~~~-iiiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-------LGERRYLENYIKGRGLT-VFFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-------HHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-------hhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence 5699999999754 45566778889999999999988652 23344443 44455777 8899999998
No 189
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.2e-07 Score=81.23 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=46.7
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhh----cCEEEEEEECCCCccccccccCCchHHHHHHH-HH------cCCCeEEEE
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT------LGVTKLLLV 96 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~----ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~------~~i~~~ivv 96 (383)
.+..+.||||||+.+|...+...+.. +|++++|+|++.... .+. ...+++..+ .. .++| +++|
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv 162 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK--KLT---TTAEFLVDILSITESSCENGID-ILIA 162 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHH--HHH---HHHHHHHHHHHHHHHHSTTCCC-EEEE
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCch--hHH---HHHHHHHHHHhhhhhccccCCC-EEEE
Confidence 56788999999998886655555554 899999999982210 011 112222222 11 2677 8999
Q ss_pred EecCCCCC
Q 016750 97 VNKMDDHT 104 (383)
Q Consensus 97 iNK~D~~~ 104 (383)
+||+|+..
T Consensus 163 ~nK~Dl~~ 170 (193)
T 2ged_A 163 CNKSELFT 170 (193)
T ss_dssp EECTTSTT
T ss_pred EEchHhcC
Confidence 99999943
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.55 E-value=9.4e-08 Score=91.74 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=24.7
Q ss_pred cEEEEEeCCCCCCh-------HHHHHHhhhhcCEEEEEEECCCC
Q 016750 30 TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKG 66 (383)
Q Consensus 30 ~~i~liDtPG~~~~-------~~~~~~~~~~ad~~ilvvda~~g 66 (383)
.++.||||||+.+. ....+..++.+|++++|+|+..+
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57999999998542 22233567899999999999875
No 191
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.54 E-value=9.2e-08 Score=82.61 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=74.3
Q ss_pred ceeeccceeeeecC--cEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCC
Q 016750 16 KTVEVGRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGV 90 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i 90 (383)
++.+.....+..++ ..+.+|||||++.|.......+..+|++++|+|...... + .....++..+.. .+.
T Consensus 38 ~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~ 111 (199)
T 2f9l_A 38 IGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNI 111 (199)
T ss_dssp CSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTC
T ss_pred cceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCC
Confidence 33444444555555 456789999998886666666778999999999987532 1 122233333333 245
Q ss_pred CeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 91 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 91 ~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
| +++++||+|+... ..... ++...+....+ +.++.+||+++.|+.++.+
T Consensus 112 ~-i~~v~nK~Dl~~~--~~~~~----~~a~~l~~~~~------~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 112 V-IMLVGNKSDLRHL--RAVPT----DEARAFAEKNN------LSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp E-EEEEEECTTCGGG--CCSCH----HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred e-EEEEEECcccccc--cCcCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 5 8899999998321 11111 12333444433 4688999999999998654
No 192
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.50 E-value=1.3e-07 Score=89.15 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred hhcceeeccceeeee------cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC-------CccccccccCCchH
Q 016750 13 IKGKTVEVGRAHFET------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-------GEFETGFEKGGQTR 79 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~------~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~-------g~~~~~~~~~~~~~ 79 (383)
.|..|..+....|.. ....+.+|||+|+++|.+.+...++.+|++|+|+|.++ ......+ ....
T Consensus 160 ~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~---~~~~ 236 (354)
T 2xtz_A 160 ARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM---METK 236 (354)
T ss_dssp CCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH---HHHH
T ss_pred ecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHH---HHHH
Confidence 455565555566655 34689999999999999999999999999999999871 1100001 1222
Q ss_pred HHHHHHHH----cCCCeEEEEEecCCC
Q 016750 80 EHVMLAKT----LGVTKLLLVVNKMDD 102 (383)
Q Consensus 80 ~~~~~~~~----~~i~~~ivviNK~D~ 102 (383)
..+..+.. .++| +|++.||+|+
T Consensus 237 ~~~~~i~~~~~~~~~p-iiLvgNK~DL 262 (354)
T 2xtz_A 237 ELFDWVLKQPCFEKTS-FMLFLNKFDI 262 (354)
T ss_dssp HHHHHHHTCGGGSSCE-EEEEEECHHH
T ss_pred HHHHHHHhccccCCCe-EEEEEECcch
Confidence 33333322 2566 9999999998
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.50 E-value=1.5e-07 Score=84.92 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=63.4
Q ss_pred CcEEEEEeCCCCCChHH------HHHHhhhhcCEEEEEEECCCCccccccccCCchHH-----HHHHHHHcCCCeEEEEE
Q 016750 29 TTRFTILDAPGHKSYVP------NMISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVV 97 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~------~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~ivvi 97 (383)
++.+.||||||..++.. .+..++.. +++++++|+..... ..... ........++| +++++
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~~~~~p-~~iv~ 178 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDLRLGAT-TIPAL 178 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHHHHTSC-EEEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhcccCCC-eEEEE
Confidence 46899999999876532 23345566 89999999876431 11111 11223345788 78999
Q ss_pred ecCCCCCCCccHHHHHHHHHHH---HH---------------------HHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 98 NKMDDHTVNWSKERYDEIESKM---TP---------------------FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
||+|+ .+ ....+++.+.+ .. .++..+. ..+++++||++|+|++++.+
T Consensus 179 NK~D~--~~--~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 179 NKVDL--LS--EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp CCGGG--CC--HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHHH
T ss_pred ecccc--cc--cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHHHH
Confidence 99998 32 11122222211 11 1223221 23789999999999998543
No 194
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.48 E-value=2.4e-07 Score=87.89 Aligned_cols=118 Identities=11% Similarity=0.175 Sum_probs=53.1
Q ss_pred hcceeeccceeeeecCc--EEEEEeCCCCCC-------hHHHHH-------Hhhhh-------------cCEEEEEEECC
Q 016750 14 KGKTVEVGRAHFETETT--RFTILDAPGHKS-------YVPNMI-------SGASQ-------------ADIGVLVISAR 64 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~~--~i~liDtPG~~~-------~~~~~~-------~~~~~-------------ad~~ilvvda~ 64 (383)
++++++.....+..++. .+++|||||+.+ |..... .+++. +|+++++|+..
T Consensus 77 ~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~ 156 (361)
T 2qag_A 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156 (361)
T ss_dssp -CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS
T ss_pred CceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC
Confidence 44444444444444443 689999999933 321111 22322 25688888764
Q ss_pred CCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccc
Q 016750 65 KGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG 144 (383)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g 144 (383)
...+ . ....+.+..+. .++| +|+|+||+|+ .+ .......++++...++..+ ++++++||++|
T Consensus 157 ~~~l----~--~~d~~~~~~l~-~~~p-iIlV~NK~Dl--~~--~~ev~~~k~~i~~~~~~~~------i~~~~~Sa~~~ 218 (361)
T 2qag_A 157 GHGL----K--PLDVAFMKAIH-NKVN-IVPVIAKADT--LT--LKERERLKKRILDEIEEHN------IKIYHLPDAES 218 (361)
T ss_dssp SSSC----C--HHHHHHHHHTC-S-SC-EEEEEECCSS--SC--HHHHHHHHHHHHHHTTCC-------CCSCCCC----
T ss_pred CCCc----c--hhHHHHHHHhc-cCCC-EEEEEECCCC--CC--HHHHHHHHHHHHHHHHHCC------CCEEeCCCcCC
Confidence 3321 1 22333334332 4577 8999999999 42 3334444456666666544 47899999999
Q ss_pred cccccc
Q 016750 145 LNMKTR 150 (383)
Q Consensus 145 ~~i~~~ 150 (383)
.| ++.
T Consensus 219 ~~-~e~ 223 (361)
T 2qag_A 219 DE-DED 223 (361)
T ss_dssp ------
T ss_pred Cc-chh
Confidence 98 553
No 195
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.47 E-value=1.6e-07 Score=84.63 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=49.8
Q ss_pred hcCEEEEEEECCCC--ccccccccCCchHHHHHHHH----HcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhc
Q 016750 53 QADIGVLVISARKG--EFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS 126 (383)
Q Consensus 53 ~ad~~ilvvda~~g--~~~~~~~~~~~~~~~~~~~~----~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (383)
.+|++|+|+|+++. .. |+ ....++..+. ..++| +++|.||+|+ .+ +... ++...+.+..
T Consensus 162 ~ad~vilV~D~t~~~~~s---~~---~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl--~~--~~~v----~~~~~~~~~~ 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRN---FD---DQLKFVSNLYNQLAKTKKP-IVVVLTKCDE--GV--ERYI----RDAHTFALSK 226 (255)
T ss_dssp ECCEEEEEEECBC----C---HH---HHHHHHHHHHHHHHHTTCC-EEEEEECGGG--BC--HHHH----HHHHHHHHTS
T ss_pred cCCEEEEEEECCCCchhh---HH---HHHHHHHHHHHHhccCCCC-EEEEEEcccc--cc--cHHH----HHHHHHHHhc
Confidence 68999999999874 21 11 2223333332 24677 8999999998 32 1111 3444444432
Q ss_pred CCCCCCCceEEEccccccccccccc
Q 016750 127 GYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 127 ~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
. .++++++||++|.|++++.
T Consensus 227 ~-----~~~~~e~SAk~g~gv~elf 246 (255)
T 3c5h_A 227 K-----NLQVVETSARSNVNVDLAF 246 (255)
T ss_dssp S-----SCCEEECBTTTTBSHHHHH
T ss_pred C-----CCeEEEEECCCCCCHHHHH
Confidence 1 3479999999999999854
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.42 E-value=3.2e-07 Score=91.78 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=58.7
Q ss_pred cEEEEEeCCCCCC-----------hHHHHHHhhhhcCEEEEEEECCCC-ccccccccCCchHHHHHHHHHcCCCeEEEEE
Q 016750 30 TRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKTLGVTKLLLVV 97 (383)
Q Consensus 30 ~~i~liDtPG~~~-----------~~~~~~~~~~~ad~~ilvvda~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~~ivvi 97 (383)
.+++||||||+.+ |...+..++..+|++|+|+|++.. .. .++.+++..+...+.| +++|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~-------~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS-------DEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC-------HHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC-------HHHHHHHHHHHhcCCC-EEEEE
Confidence 4789999999875 666777788999999999999873 32 3566677777666777 89999
Q ss_pred ecCCCCCCCccHHHHHHHHHHHH
Q 016750 98 NKMDDHTVNWSKERYDEIESKMT 120 (383)
Q Consensus 98 NK~D~~~~~~~~~~~~~~~~~~~ 120 (383)
||+|+ .+ +..+.++...+.
T Consensus 226 NK~Dl--~~--~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADM--VE--TQQLMRVYGALM 244 (550)
T ss_dssp ECGGG--SC--HHHHHHHHHHHH
T ss_pred ECCCc--cC--HHHHHHHHHHhh
Confidence 99999 43 344444444443
No 197
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.42 E-value=1.4e-07 Score=89.46 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=66.0
Q ss_pred CcEEEEEeCCCCCCh-------------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEE
Q 016750 29 TTRFTILDAPGHKSY-------------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 95 (383)
Q Consensus 29 ~~~i~liDtPG~~~~-------------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~iv 95 (383)
...++||||||..++ ...+..++..+|++|+|+|+..... . .....+.+..+...+.| +|+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~----~-~~~~~~l~~~~~~~~~~-~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL----A-TSDAIKISREVDPSGDR-TFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG----G-GCHHHHHHHHSCTTCTT-EEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc----C-CHHHHHHHHHhcccCCC-EEE
Confidence 568999999998776 5556678889999999998754221 0 12233444444445677 889
Q ss_pred EEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 96 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 96 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
|+||+|+.... .. ..+. ++..... ...+++++|+.++.++.+..
T Consensus 209 V~nK~Dl~~~~--~~----~~~~----~~~~~~~--~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 209 VLTKIDLMDKG--TD----AVEI----LEGRSFK--LKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp EEECGGGCCTT--CC----SHHH----HTTSSSC--CSSCCEEECCCCHHHHHTTC
T ss_pred EEeCCccCCCc--cc----HHHH----HcCcccc--ccCCeEEEEECChHHhccCC
Confidence 99999983211 11 1111 1111111 13478999999998887643
No 198
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.42 E-value=1.7e-07 Score=88.69 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=68.0
Q ss_pred hcceeeccceeeee-cCcEEEEEeCCCCCC------------h-HHHHHHhhhhc-CEEEEEEECCCCccccccccCCch
Q 016750 14 KGKTVEVGRAHFET-ETTRFTILDAPGHKS------------Y-VPNMISGASQA-DIGVLVISARKGEFETGFEKGGQT 78 (383)
Q Consensus 14 rG~Ti~~~~~~~~~-~~~~i~liDtPG~~~------------~-~~~~~~~~~~a-d~~ilvvda~~g~~~~~~~~~~~~ 78 (383)
+|+..+.....+.. +..+++||||||..+ . ...+..++..+ +++++|+|++.+.. .+.
T Consensus 113 ~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-------~~~ 185 (353)
T 2x2e_A 113 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSD 185 (353)
T ss_dssp TCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-------GCH
T ss_pred CCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-------hhH
Confidence 44444333333333 257899999999643 2 23344455544 56666778776542 233
Q ss_pred H-HHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 79 R-EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 79 ~-~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
. +.+..+...+.| +++|+||+|+.... .. ..+.+.... ..+. ....+++++||++|.|+.++.+
T Consensus 186 ~~~i~~~~~~~~~~-~i~V~NK~Dl~~~~--~~----~~~~~~~~~--~~l~-~~~~~v~~~SA~~~~~i~~l~~ 250 (353)
T 2x2e_A 186 ALKVAKEVDPQGQR-TIGVITKLDLMDEG--TD----ARDVLENKL--LPLR-RGYIGVVNRSQKDIDGKKDITA 250 (353)
T ss_dssp HHHHHHHHCTTCTT-EEEEEECGGGSCTT--CC----CHHHHTTCS--SCCT-TCEEECCCCCHHHHHTTCCHHH
T ss_pred HHHHHHHhCcCCCc-eEEEeccccccCcc--hh----HHHHHhCCc--cccc-CCceEEEeCCcccccccccHHH
Confidence 3 355555556787 88999999993211 10 111111100 1110 0123688999999999988643
No 199
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.36 E-value=1.8e-06 Score=78.84 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=60.6
Q ss_pred EEeCCCCC-ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHH
Q 016750 34 ILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 112 (383)
Q Consensus 34 liDtPG~~-~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~ 112 (383)
+=+.|||. +..+++...+..+|+++.|+||..+.. ......-.++ .++| .++++||+|+ ++ .+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~~~~l~~~l--~~kp-~ilVlNK~DL--~~--~~~- 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SRNPMIEDIL--KNKP-RIMLLNKADK--AD--AAV- 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TSCHHHHHHC--SSSC-EEEEEECGGG--SC--HHH-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cCCHHHHHHH--CCCC-EEEEEECccc--CC--HHH-
Confidence 44679997 467788889999999999999998753 1211222222 3566 7899999999 53 222
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 113 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+...++++..+ .+++++||.+|.|+.++.+
T Consensus 68 ---~~~~~~~~~~~g------~~~i~iSA~~~~gi~~L~~ 98 (282)
T 1puj_A 68 ---TQQWKEHFENQG------IRSLSINSVNGQGLNQIVP 98 (282)
T ss_dssp ---HHHHHHHHHTTT------CCEEECCTTTCTTGGGHHH
T ss_pred ---HHHHHHHHHhcC------CcEEEEECCCcccHHHHHH
Confidence 223334454433 3689999999999998543
No 200
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.33 E-value=8.7e-07 Score=81.89 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=64.4
Q ss_pred CCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHH
Q 016750 40 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 119 (383)
Q Consensus 40 ~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~ 119 (383)
++++......+++++|.+++|+|++.+.+. + ....+++..+...++| +++|+||+|+ .+ +... ...+++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s--~---~~l~~~l~~~~~~~~~-~ilV~NK~DL--~~--~~~v-~~~~~~ 134 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFN--N---YLLDNMLVVYEYFKVE-PVIVFNKIDL--LN--EEEK-KELERW 134 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCC--H---HHHHHHHHHHHHTTCE-EEEEECCGGG--CC--HHHH-HHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCC--H---HHHHHHHHHHHhCCCC-EEEEEEcccC--CC--cccc-HHHHHH
Confidence 555554444678899999999999976421 0 1223455666777888 7899999999 43 2111 112334
Q ss_pred HHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 120 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 120 ~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
...++..+ ++++++||++|.|++++.+
T Consensus 135 ~~~~~~~g------~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 135 ISIYRDAG------YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHCC------CeEEEEECCCCCCHHHHHh
Confidence 44555555 3699999999999998754
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.32 E-value=6.2e-07 Score=84.63 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=61.3
Q ss_pred eecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 016750 26 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 26 ~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~ 105 (383)
...+..+.|+||||...-. ......+|++++|+|+..+.. .+ .+.. ..+..| .++++||+|+ .
T Consensus 163 ~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~-------~~---~i~~-~il~~~-~ivVlNK~Dl--~ 225 (349)
T 2www_A 163 EGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE-------LQ---GIKR-GIIEMA-DLVAVTKSDG--D 225 (349)
T ss_dssp HHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSG--G
T ss_pred ccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh-------HH---HhHH-HHHhcC-CEEEEeeecC--C
Confidence 3467899999999974322 233568999999999986531 11 1111 124566 5788999998 3
Q ss_pred CccHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEcccccccccccccc
Q 016750 106 NWSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
+ ..........+...++..... .....+++++||++|+|++++.+
T Consensus 226 ~--~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~ 271 (349)
T 2www_A 226 L--IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWD 271 (349)
T ss_dssp G--HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHH
T ss_pred C--chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHH
Confidence 2 122222333444433322100 00024789999999999998644
No 202
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.31 E-value=2.5e-06 Score=82.14 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=70.9
Q ss_pred ceeeccceeeeecC-cEEEEEeCCCCCCh-------HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-
Q 016750 16 KTVEVGRAHFETET-TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK- 86 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~-~~i~liDtPG~~~~-------~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~- 86 (383)
+|.+.....+..++ ..++++||||+.+. .......+..+|.++.++|++...++ .++ .-.++...++.
T Consensus 190 tTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~-~ls--~g~~el~~la~a 266 (416)
T 1udx_A 190 TTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLK-TLE--TLRKEVGAYDPA 266 (416)
T ss_dssp CSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHH-HHH--HHHHHHHHHCHH
T ss_pred ceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHH-HHH--HHHHHHHHHhHH
Confidence 45555555566654 78999999998432 22334456679999999999722110 010 00111222221
Q ss_pred HcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 87 TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 87 ~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
....| .++++||+|+ .. . +..+.+...++..+ .+++++||++++|++++.+
T Consensus 267 L~~~P-~ILVlNKlDl--~~--~----~~~~~l~~~l~~~g------~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 267 LLRRP-SLVALNKVDL--LE--E----EAVKALADALAREG------LAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp HHHSC-EEEEEECCTT--SC--H----HHHHHHHHHHHTTT------SCEEECCTTTCTTHHHHHH
T ss_pred hhcCC-EEEEEECCCh--hh--H----HHHHHHHHHHHhcC------CeEEEEECCCccCHHHHHH
Confidence 13567 6678899998 32 1 22333444444333 4799999999999999654
No 203
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.31 E-value=4.8e-07 Score=77.62 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=73.0
Q ss_pred ceeeccceeeeecCcE--EEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH---cCC
Q 016750 16 KTVEVGRAHFETETTR--FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGV 90 (383)
Q Consensus 16 ~Ti~~~~~~~~~~~~~--i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~---~~i 90 (383)
++.+.....+..++.. +.+|||||+++|...+...++.+|.+++|+|...... + .....++..+.. .+.
T Consensus 62 ~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~ 135 (191)
T 1oix_A 62 IGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNI 135 (191)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTC
T ss_pred cceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCC
Confidence 3444444455556554 4679999999887777777788999999999876431 1 122223333332 245
Q ss_pred CeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 91 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 91 ~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
| +++++||+|+... ..... +....+....+ +.++.+||+++.|+.++.
T Consensus 136 ~-i~~v~nK~Dl~~~--~~~~~----~~a~~l~~~~~------~~~ld~Sald~~~v~~l~ 183 (191)
T 1oix_A 136 V-IMLVGNKSDLRHL--RAVPT----DEARAFAEKNG------LSFIETSALDSTNVEAAF 183 (191)
T ss_dssp E-EEEEEECGGGGGG--CCSCH----HHHHHHHHHTT------CEEEECCTTTCTTHHHHH
T ss_pred c-EEEEEECcccccc--cccCH----HHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 5 8899999998321 11111 22333444433 468899999999999853
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.16 E-value=6.8e-07 Score=78.29 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=60.5
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 106 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~ 106 (383)
+.+..+.+|||||+..--. ..-..++.+++|+|+..+. .. .+..+...+.| .++++||+|+ .+
T Consensus 106 ~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~--------~~---~~~~~~~~~~~-~iiv~NK~Dl--~~ 168 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGD--------DV---VEKHPEIFRVA-DLIVINKVAL--AE 168 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCT--------TH---HHHCHHHHHTC-SEEEEECGGG--HH
T ss_pred cCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcc--------hh---hhhhhhhhhcC-CEEEEecccC--Cc
Confidence 4567899999999511100 0012468899999998753 11 12223344677 6789999998 32
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 107 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
......+++.+.+ +.++. ..+++++||++|.|+.++.+
T Consensus 169 ~~~~~~~~~~~~~----~~~~~----~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 169 AVGADVEKMKADA----KLINP----RAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp HHTCCHHHHHHHH----HHHCT----TSEEEECBTTTTBTHHHHHH
T ss_pred chhhHHHHHHHHH----HHhCC----CCeEEEeecCCCCCHHHHHH
Confidence 0001233333333 33321 35899999999999998543
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.12 E-value=4e-06 Score=79.66 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=63.7
Q ss_pred EEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHH
Q 016750 32 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 111 (383)
Q Consensus 32 i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~ 111 (383)
+.-+|+| +++|.+.+......+|++++|+|+.+... .+. ....+. + .+.| +++|+||+|+...+. .
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~--~~l~~~---l--~~~p-iilV~NK~DLl~~~~---~ 116 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--SFI--PGLPRF---A--ADNP-ILLVGNKADLLPRSV---K 116 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCC--SSHHHH---C--TTSC-EEEEEECGGGSCTTC---C
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--chh--hHHHHH---h--CCCC-EEEEEEChhcCCCcc---C
Confidence 4445555 77888877777789999999999987542 111 112221 1 1566 889999999932211 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 112 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+.+.+.+...++..|+. ..+++++||++|.|+.++.
T Consensus 117 ~~~~~~~l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 153 (369)
T 3ec1_A 117 YPKLLRWMRRMAEELGLC---PVDVCLVSAAKGIGMAKVM 153 (369)
T ss_dssp HHHHHHHHHHHHHTTTCC---CSEEEECBTTTTBTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---cccEEEEECCCCCCHHHHH
Confidence 234445555667777764 2378999999999999854
No 206
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.04 E-value=5.1e-06 Score=75.03 Aligned_cols=88 Identities=16% Similarity=0.086 Sum_probs=55.6
Q ss_pred CCCCCCh-HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHH
Q 016750 37 APGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 115 (383)
Q Consensus 37 tPG~~~~-~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~ 115 (383)
-|||... .+.+...+..+|+++.|+||..+... .. ... + ++ ++| .++++||+|+ ++ ...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~--~~--~~l-~---ll---~k~-~iivlNK~DL--~~--~~~---- 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFAT--SA--YGV-D---FS---RKE-TIILLNKVDI--AD--EKT---- 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTT--SC--TTS-C---CT---TSE-EEEEEECGGG--SC--HHH----
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcC--cC--hHH-H---hc---CCC-cEEEEECccC--CC--HHH----
Confidence 3898754 45788889999999999999987641 00 111 1 12 777 7889999999 53 222
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 116 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
.+...++++..|+ ++ ++||.+|.|+.++.
T Consensus 64 ~~~~~~~~~~~g~------~v-~iSa~~~~gi~~L~ 92 (262)
T 3cnl_A 64 TKKWVEFFKKQGK------RV-ITTHKGEPRKVLLK 92 (262)
T ss_dssp HHHHHHHHHHTTC------CE-EECCTTSCHHHHHH
T ss_pred HHHHHHHHHHcCC------eE-EEECCCCcCHHHHH
Confidence 2233344544443 46 89999999988743
No 207
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.03 E-value=1e-05 Score=69.65 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=57.2
Q ss_pred CCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH----HHHHH----cCCCeEEEEEecC-CCCCCCcc
Q 016750 38 PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKT----LGVTKLLLVVNKM-DDHTVNWS 108 (383)
Q Consensus 38 PG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~----~~~~~----~~i~~~ivviNK~-D~~~~~~~ 108 (383)
.|+..+...+..++..+|++|+|||+++... ...++-+ .++.. .++| ++|+.||. |++++- +
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R-------~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Am-s 180 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM-P 180 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCC-------CCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBC-C
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhH-------HHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCC-C
Confidence 3788888888999999999999999987532 1233333 12211 3677 88889995 776542 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
. .++.+.+. |..+. ..+.+.++||++|+|+.+-
T Consensus 181 ~---~EI~e~L~--L~~l~----R~W~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 181 C---FYLAHELH--LNLLN----HPWLVQDTEAETLTGFLNG 213 (227)
T ss_dssp H---HHHHHHTT--GGGGC----SCEEEEEEETTTCTTHHHH
T ss_pred H---HHHHHHcC--CcCCC----CCEEEEEeECCCCcCHHHH
Confidence 1 23333321 22221 3678999999999999883
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.00 E-value=1e-05 Score=75.79 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=61.6
Q ss_pred eeecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q 016750 25 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 104 (383)
Q Consensus 25 ~~~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~ 104 (383)
++..+.++.|+||||..+-.. .....+|++++|+|+..+.. .+ ..... +. .++ .++++||+|+
T Consensus 143 ~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~---~i~~~---i~--~~~-~ivvlNK~Dl-- 205 (337)
T 2qm8_A 143 CEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQ---GIKKG---IF--ELA-DMIAVNKADD-- 205 (337)
T ss_dssp HHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------------CCTT---HH--HHC-SEEEEECCST--
T ss_pred HhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HH---HHHHH---Hh--ccc-cEEEEEchhc--
Confidence 345688999999999765321 23468999999999865421 00 00000 11 124 3567799997
Q ss_pred CCccHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEcccccccccccccc
Q 016750 105 VNWSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+. ........+++...+..+.-. .....+++++||++|.|++++.+
T Consensus 206 ~~~-~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 206 GDG-ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWS 253 (337)
T ss_dssp TCC-HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHH
T ss_pred cCc-hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 321 122223334444434322200 00023789999999999998654
No 209
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.96 E-value=5.8e-06 Score=78.50 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=62.1
Q ss_pred CCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHH
Q 016750 40 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 119 (383)
Q Consensus 40 ~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~ 119 (383)
.++|.+.+....+.+|++++|+|+.+... .+. ....++ + .++| +++|+||+|+..... ..+.+.+.+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~--~~~--~~l~~~---~--~~~p-~ilV~NK~DL~~~~~---~~~~~~~~l 122 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNG--SWL--PGLHRF---V--GNNK-VLLVGNKADLIPKSV---KHDKVKHWM 122 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHH--HCC--TTHHHH---S--SSSC-EEEEEECGGGSCTTS---CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcc--cHH--HHHHHH---h--CCCc-EEEEEEChhcCCccc---CHHHHHHHH
Confidence 46677777777778889999999987321 111 111111 1 2566 889999999942211 123344445
Q ss_pred HHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 120 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 120 ~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
...++..|+. ..+++++||++|.|++++.
T Consensus 123 ~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 151 (368)
T 3h2y_A 123 RYSAKQLGLK---PEDVFLISAAKGQGIAELA 151 (368)
T ss_dssp HHHHHHTTCC---CSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHcCCC---cccEEEEeCCCCcCHHHHH
Confidence 5566666763 2378999999999999854
No 210
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.87 E-value=1.8e-05 Score=72.96 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=57.8
Q ss_pred HhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 016750 49 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 128 (383)
Q Consensus 49 ~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (383)
..+.++|.+++|+|+..+.+. .....+.+..+...+++ .++|+||+|+ ++. ....+..+.+...++..|+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~-----~~~i~r~L~~~~~~~~~-~vivlnK~DL--~~~--~~~~~~~~~~~~~y~~~g~ 151 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFS-----TALLDRFLVLVEANDIQ-PIICITKMDL--IED--QDTEDTIQAYAEDYRNIGY 151 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCC-----HHHHHHHHHHHHTTTCE-EEEEEECGGG--CCC--HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCEEEEEEeCCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEECCcc--Cch--hhhHHHHHHHHHHHHhCCC
Confidence 367899999999999977641 01222334444557887 7789999999 531 1111223444555666664
Q ss_pred CCCCCceEEEccccccccccccc
Q 016750 129 NVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 129 ~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++++||.+|.|++++.
T Consensus 152 ------~v~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 152 ------DVYLTSSKDQDSLADII 168 (307)
T ss_dssp ------CEEECCHHHHTTCTTTG
T ss_pred ------eEEEEecCCCCCHHHHH
Confidence 58999999999988754
No 211
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.82 E-value=2.2e-05 Score=74.30 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=61.3
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 85 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~ 85 (383)
-.++|++.....+.+++.++.|+||||..+ ..+..+..++.+|++++|+|+.++.. +.......+
T Consensus 102 ~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--------~~~~i~~EL 173 (376)
T 4a9a_A 102 YEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--------HKQIIEKEL 173 (376)
T ss_dssp TCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--------HHHHHHHHH
T ss_pred CCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--------HHHHHHHHH
Confidence 358999999999999999999999999642 45667788999999999999987641 222222334
Q ss_pred HHc-----CCCeEEEEEecCCCC
Q 016750 86 KTL-----GVTKLLLVVNKMDDH 103 (383)
Q Consensus 86 ~~~-----~i~~~ivviNK~D~~ 103 (383)
... ..| .++++||+|..
T Consensus 174 ~~~~~~l~~k~-~~i~~nK~d~~ 195 (376)
T 4a9a_A 174 EGVGIRLNKTP-PDILIKKKEKG 195 (376)
T ss_dssp HHTTEEETCCC-CCEEEEECSSS
T ss_pred HHhhHhhccCC-hhhhhhHhhhh
Confidence 433 234 56899999973
No 212
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.69 E-value=3.4e-05 Score=57.58 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=64.7
Q ss_pred EEEEEE--ccCCeEEEEEEEEeEEecCCEEEEecCCcE---EEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEE
Q 016750 185 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 259 (383)
Q Consensus 185 ~I~~~~--~~~G~vv~G~V~sG~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~v 259 (383)
.|.++| +..|+++..+|.+|.++.+..+.+...+.. -++.|+..+.+++.++.+|.-+++.+.+. +|++.||+
T Consensus 10 eVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD~ 87 (99)
T 1d1n_A 10 EVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGDV 87 (99)
T ss_dssp EECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCSE
T ss_pred EEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCCE
Confidence 344555 357999999999999999999999998853 47889999999999999999999999855 57999998
Q ss_pred Eec
Q 016750 260 LSS 262 (383)
Q Consensus 260 l~~ 262 (383)
+-.
T Consensus 88 Ie~ 90 (99)
T 1d1n_A 88 IEA 90 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 843
No 213
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.68 E-value=6.7e-05 Score=67.74 Aligned_cols=96 Identities=10% Similarity=-0.003 Sum_probs=61.6
Q ss_pred CCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH----HHH---HH-cCCCeEEEEEec-CCCCCCCc
Q 016750 37 APGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLA---KT-LGVTKLLLVVNK-MDDHTVNW 107 (383)
Q Consensus 37 tPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~----~~~---~~-~~i~~~ivviNK-~D~~~~~~ 107 (383)
..|+..+...+..++..+|++|+|||+++..- -..++.+ .++ .. .++| ++|+.|| .|++++-
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR-------leak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Am- 264 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM- 264 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCC-------CCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBC-
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH-------HHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCC-
Confidence 45788888899999999999999999987542 1122221 222 11 4788 8888997 5886542
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 108 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+ ..++.+.+. |..+. ..+.+.++||.+|+|+.+-
T Consensus 265 s---~~EI~e~L~--L~~l~----r~W~Iq~csA~tGeGL~EG 298 (312)
T 3l2o_B 265 P---CFYLAHELH--LNLLN----HPWLVQDTEAETLTGFLNG 298 (312)
T ss_dssp C---HHHHHHHTT--GGGGC----SCEEEEEEETTTCTTHHHH
T ss_pred C---HHHHHHHcC--CccCC----CcEEEEecccCCCcCHHHH
Confidence 2 123333321 12221 2678999999999999884
No 214
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.66 E-value=0.00015 Score=55.99 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=65.9
Q ss_pred eEEEEEEEc--cCCe---EEEEEEEEeEEecCCEEEEecCCcE---EEEEEEEECCccceecCCCCeEEEEEecCCcc-C
Q 016750 183 RMPIIDKFK--DMGT---VVMGKVESGSVREGDSLLVMPNKAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEE-D 253 (383)
Q Consensus 183 ~~~I~~~~~--~~G~---vv~G~V~sG~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~-~ 253 (383)
...|.++|+ ..|+ ++.++|.+|.|+.+..+.+...+.. -++.|+..+.++|.++.+|.-+++.|.+. + |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~f--niD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEE--KVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCT--TSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccC--CCC
Confidence 445666663 4677 8999999999999999999998853 37889999999999999999999999854 5 6
Q ss_pred ceeeEEEecC
Q 016750 254 ILSGFVLSSV 263 (383)
Q Consensus 254 i~~G~vl~~~ 263 (383)
++.||++-.-
T Consensus 90 ik~GDiIE~y 99 (120)
T 2crv_A 90 FKPGDQVICY 99 (120)
T ss_dssp CCTTEEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999998543
No 215
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.60 E-value=0.00019 Score=67.59 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=40.9
Q ss_pred hhcceeeccceeeeecC-----------------cEEEEEeCCCCCChH-------HHHHHhhhhcCEEEEEEECCC
Q 016750 13 IKGKTVEVGRAHFETET-----------------TRFTILDAPGHKSYV-------PNMISGASQADIGVLVISARK 65 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~-----------------~~i~liDtPG~~~~~-------~~~~~~~~~ad~~ilvvda~~ 65 (383)
-.+.|++.....+.+++ ..+.||||||+.++. ......++.+|++++|+|+++
T Consensus 32 ~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 32 YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp -CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 34678888777776655 579999999998764 234556889999999999986
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.57 E-value=4.2e-05 Score=75.22 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=43.5
Q ss_pred ecCcEEEEEeCCCCCC----hHHHHHHhh--hhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecC
Q 016750 27 TETTRFTILDAPGHKS----YVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 100 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~----~~~~~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~ 100 (383)
+.++.+.||||||... +...+.... ..+|.+++|+|+..+. .....+..+... +|-.++++||+
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HCCCCEEEECT
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cCceEEEEeCC
Confidence 3678999999999763 333333222 2789999999998863 233333333322 44126789999
Q ss_pred CCC
Q 016750 101 DDH 103 (383)
Q Consensus 101 D~~ 103 (383)
|..
T Consensus 251 D~~ 253 (504)
T 2j37_W 251 DGH 253 (504)
T ss_dssp TSC
T ss_pred ccc
Confidence 984
No 217
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.52 E-value=0.00018 Score=66.21 Aligned_cols=79 Identities=8% Similarity=0.113 Sum_probs=39.9
Q ss_pred CEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 016750 55 DIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDV 134 (383)
Q Consensus 55 d~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (383)
++++++++.+.+- ++ +...+.+..+. .+++ +++|+||.|+ .. +......++++.+.++..+ +
T Consensus 128 ~~ll~ldePt~~~----Ld--~~~~~~l~~l~-~~~~-iilV~~K~Dl--~~--~~e~~~~~~~~~~~~~~~~------~ 189 (301)
T 2qnr_A 128 HCCFYFISPFGHG----LK--PLDVAFMKAIH-NKVN-IVPVIAKADT--LT--LKERERLKKRILDEIEEHN------I 189 (301)
T ss_dssp CEEEEEECSSSSS----CC--HHHHHHHHHHT-TTSC-EEEEECCGGG--SC--HHHHHHHHHHHHHHHHHTT------C
T ss_pred hheeeeecCcccC----CC--HHHHHHHHHHH-hcCC-EEEEEEeCCC--CC--HHHHHHHHHHHHHHHHHcC------C
Confidence 4466666654321 22 33334443332 2455 8899999998 32 2333344566677777665 3
Q ss_pred eEEEcccccccccccccc
Q 016750 135 QFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 135 ~~i~iSa~~g~~i~~~~~ 152 (383)
+++++||++| |++++..
T Consensus 190 ~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 190 KIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp CCCCCC----------CH
T ss_pred eEEecCCccc-cccHHHH
Confidence 6899999999 9998643
No 218
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.40 E-value=0.00041 Score=65.55 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCCCCh-------HHHHHHhhhhcCEEEEEEECCC
Q 016750 29 TTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 29 ~~~i~liDtPG~~~~-------~~~~~~~~~~ad~~ilvvda~~ 65 (383)
...+.||||||+.++ .......++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457999999998664 3456677899999999999986
No 219
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.31 E-value=0.00044 Score=66.43 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=51.6
Q ss_pred EEEEEeCCCCCChHH------HHH--------H-----------hhhh--cCEEEEEEECC-CCccccccccCCchHHHH
Q 016750 31 RFTILDAPGHKSYVP------NMI--------S-----------GASQ--ADIGVLVISAR-KGEFETGFEKGGQTREHV 82 (383)
Q Consensus 31 ~i~liDtPG~~~~~~------~~~--------~-----------~~~~--ad~~ilvvda~-~g~~~~~~~~~~~~~~~~ 82 (383)
.++++||||+.++.. .+. . .+.. +|++|++++++ .+. + +.+.+.+
T Consensus 89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L-----~--~~d~~~l 161 (418)
T 2qag_C 89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-----K--PLDIEFM 161 (418)
T ss_dssp EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC-----C--HHHHHHH
T ss_pred ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC-----C--HHHHHHH
Confidence 689999999876531 110 0 1122 34566666654 343 1 3444555
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~ 149 (383)
..+.. +++ +|+|+||+|+ .. +......++++...+...++ +++.+|+.++.++.+
T Consensus 162 k~L~~-~v~-iIlVinK~Dl--l~--~~ev~~~k~~i~~~~~~~~i------~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 162 KRLHE-KVN-IIPLIAKADT--LT--PEECQQFKKQIMKEIQEHKI------KIYEFPETDDEEENK 216 (418)
T ss_dssp HHHTT-TSE-EEEEEESTTS--SC--HHHHHHHHHHHHHHHHHHTC------CCCCCC---------
T ss_pred HHHhc-cCc-EEEEEEcccC--cc--HHHHHHHHHHHHHHHHHcCC------eEEeCCCCCCcCHHH
Confidence 55543 676 9999999998 42 34556666777777776653 578899999888776
No 220
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.31 E-value=0.00048 Score=64.64 Aligned_cols=83 Identities=25% Similarity=0.261 Sum_probs=52.4
Q ss_pred hhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCC
Q 016750 51 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 130 (383)
Q Consensus 51 ~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
+.++|.+++| ||..+.+ + .....+.+..+...+++ .++|+||+|+ ++ .... +..+.+...+...|+
T Consensus 128 ~anvD~v~iv-~a~~P~~----~-~~~i~r~L~~a~~~~~~-~iivlNK~DL--~~--~~~~-~~~~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPEL----S-LNIIDRYLVGCETLQVE-PLIVLNKIDL--LD--DEGM-DFVNEQMDIYRNIGY-- 193 (358)
T ss_dssp EECCCEEEEE-EESTTTC----C-HHHHHHHHHHHHHHTCE-EEEEEECGGG--CC--HHHH-HHHHHHHHHHHTTTC--
T ss_pred HhcCCEEEEE-EeCCCCC----C-HHHHHHHHHHHHhcCCC-EEEEEECccC--CC--chhH-HHHHHHHHHHHhCCC--
Confidence 5789999976 4555442 1 01222344455667888 6889999999 53 2211 122334445566665
Q ss_pred CCCceEEEccccccccccccc
Q 016750 131 KKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 131 ~~~~~~i~iSa~~g~~i~~~~ 151 (383)
+++++|+.+|.|+.++.
T Consensus 194 ----~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 194 ----RVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp ----CEEECBTTTTBTHHHHH
T ss_pred ----cEEEEecCCCcCHHHHH
Confidence 58999999999998754
No 221
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.17 E-value=0.0011 Score=65.08 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=67.0
Q ss_pred eEEEEEEEc--cCCeEEEEEEEEeEEecCCEEEEecCCc---EEEEEEEEECCccceecCCCCeEEEEEecCCccCceee
Q 016750 183 RMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 257 (383)
Q Consensus 183 ~~~I~~~~~--~~G~vv~G~V~sG~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G 257 (383)
...|.++|+ ..|.++.++|..|.++.|..+.+...+. .-++.||+.++++++++..|+-|++.+.+. .+++.|
T Consensus 410 ~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~~~~--~~~~~g 487 (501)
T 1zo1_I 410 LAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNY--NDVRTG 487 (501)
T ss_dssp CEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEEEBCCC--TTCCTT
T ss_pred EEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCEEEEEEcCc--CCCCCC
Confidence 445667885 4699999999999999999999987773 568999999999999999999999999865 479999
Q ss_pred EEEec
Q 016750 258 FVLSS 262 (383)
Q Consensus 258 ~vl~~ 262 (383)
|++-.
T Consensus 488 d~~~~ 492 (501)
T 1zo1_I 488 DVIEV 492 (501)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 98854
No 222
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.97 E-value=0.00098 Score=58.03 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=54.9
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCcc
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 108 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~ 108 (383)
+..+.++||+|.-.- .. +.-...+..+.|+|+..+.. ... .. ....+.| .++++||+|+ .+
T Consensus 118 ~~d~~~id~~g~i~~-~~--s~~~~~~~~~~v~~~~~~~~-------~~~-~~---~~~~~~~-~iiv~NK~Dl--~~-- 178 (226)
T 2hf9_A 118 EIDLLFIENVGNLIC-PA--DFDLGTHKRIVVISTTEGDD-------TIE-KH---PGIMKTA-DLIVINKIDL--AD-- 178 (226)
T ss_dssp GCSEEEEECCSCSSG-GG--GCCCSCSEEEEEEEGGGCTT-------TTT-TC---HHHHTTC-SEEEEECGGG--HH--
T ss_pred CCCEEEEeCCCCccC-cc--hhhhccCcEEEEEecCcchh-------hHh-hh---hhHhhcC-CEEEEecccc--Cc--
Confidence 347888999984211 00 01124567788888754321 111 11 1224667 6789999998 31
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccccc
Q 016750 109 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 152 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~~ 152 (383)
.+ ....+++...++.++. ..+++++||++|.|+.++.+
T Consensus 179 -~~-~~~~~~~~~~~~~~~~----~~~~~~~Sa~~g~gv~~l~~ 216 (226)
T 2hf9_A 179 -AV-GADIKKMENDAKRINP----DAEVVLLSLKTMEGFDKVLE 216 (226)
T ss_dssp -HH-TCCHHHHHHHHHHHCT----TSEEEECCTTTCTTHHHHHH
T ss_pred -hh-HHHHHHHHHHHHHhCC----CCeEEEEEecCCCCHHHHHH
Confidence 10 0011223333333321 35899999999999998543
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.93 E-value=0.0038 Score=60.12 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=55.7
Q ss_pred cCcEEEEEeCCCCCCh----HHHHH--HhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~--~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
.++.+.||||||.... ..++. ..+..+|.++||+||..|. .....+...... .+...+++||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---------~a~~~a~~f~~~-~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---------QAYNQALAFKEA-TPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GHHHHHHHHHHS-CTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---------hHHHHHHHHHhh-CCCeEEEEECCC
Confidence 4578999999995432 22221 2334689999999998752 333333333322 222457899999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccccc
Q 016750 102 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 151 (383)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~~ 151 (383)
... +..... +.....+ .|+.+++. |++++++.
T Consensus 251 ~~~------~gG~~l----s~~~~~g------~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 251 GSA------KGGGAL----SAVAATG------APIKFIGT--GEKIDDIE 282 (443)
T ss_dssp SCS------SHHHHH----HHHHTTC------CCEEEEEC--SSSTTCEE
T ss_pred Ccc------cccHHH----HHHHHHC------CCEEEEEc--CCChHHhh
Confidence 832 111221 2223333 36666664 89887753
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.93 E-value=0.004 Score=56.94 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=56.9
Q ss_pred cCcEEEEEeCCCCCC--hHHHHH------HhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEec
Q 016750 28 ETTRFTILDAPGHKS--YVPNMI------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 99 (383)
Q Consensus 28 ~~~~i~liDtPG~~~--~~~~~~------~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK 99 (383)
+++.+.||||||... ....+. ..+..+|.+++|+|+..+ .+..+.+..... .++...+++||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 577899999999776 322222 245579999999999754 233444443333 34435578999
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 100 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 100 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
+|... +...+ .+.....+ .|+..++ .|++++++
T Consensus 249 ~D~~~------~~g~~----~~~~~~~~------~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 249 MDGTA------KGGGA----LSAVAATG------ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGGCT------THHHH----HHHHHTTT------CCEEEEE--CSSSTTCE
T ss_pred CCCCc------chHHH----HHHHHHHC------cCEEEEe--CCCChhhc
Confidence 99721 12222 22333333 3565555 58888764
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.87 E-value=0.0055 Score=59.08 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=41.6
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHH--hhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCC-CeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~--~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i-~~~ivviNK~ 100 (383)
.++.+.||||||.... ...+.. .+..+|.+++|+|+..+. .....+.... .++ +...+++||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 6788999999997653 333222 222689999999997752 2222222222 234 4367899999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|.
T Consensus 249 D~ 250 (432)
T 2v3c_C 249 DG 250 (432)
T ss_dssp SS
T ss_pred CC
Confidence 98
No 226
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.69 E-value=0.0083 Score=60.26 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=67.0
Q ss_pred CCeeEEEE--EEEc-cCCeEEEEEEEEeEEecCCEEEEecCC-cEEEEEEEEECCccceecCCCCeEEEEEecCC-ccCc
Q 016750 180 GPFRMPII--DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDI 254 (383)
Q Consensus 180 ~p~~~~I~--~~~~-~~G~vv~G~V~sG~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~-~~~i 254 (383)
.|..+.|. .+|+ ..|.++.++|..|.|+.|..+.+ +.+ ..-+|.||+.+++++++|..|+-|++.+.+.. -.++
T Consensus 462 ~~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~ 540 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTI 540 (594)
T ss_dssp CCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTB
T ss_pred eeEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCC
Confidence 45555544 5774 35899999999999999999998 544 56689999999999999999999999998642 2578
Q ss_pred eeeEEEecC
Q 016750 255 LSGFVLSSV 263 (383)
Q Consensus 255 ~~G~vl~~~ 263 (383)
+.||+|-..
T Consensus 541 ~~~d~~~~~ 549 (594)
T 1g7s_A 541 HEGDTLYVD 549 (594)
T ss_dssp CTTCEEEEC
T ss_pred CCCCEEEEE
Confidence 899988654
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.68 E-value=0.0061 Score=58.64 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=56.4
Q ss_pred cCcEEEEEeCCCCCC------hHHHHHHh--hhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEEEEEe
Q 016750 28 ETTRFTILDAPGHKS------YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVN 98 (383)
Q Consensus 28 ~~~~i~liDtPG~~~------~~~~~~~~--~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~ivviN 98 (383)
.++.+.|+||||... +..++... ...+|.++||+|+..|. .....+.... ..++ ..+++|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---------~a~~~a~~f~~~~~~--~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---------KAYDLASRFHQASPI--GSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GGHHHHHHHHHHCSS--EEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---------HHHHHHHHHhcccCC--cEEEEe
Confidence 477899999999644 34443332 22569999999998752 3334444443 3444 457899
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 99 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 99 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
|+|.. . +.....+.. ...+ .|+..++. |++++++
T Consensus 247 KlD~~-a-----~~G~als~~----~~~g------~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 247 KMDGT-A-----KGGGALSAV----VATG------ATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CGGGC-S-----CHHHHHHHH----HHHT------CEEEEEEC--CSSSSCE
T ss_pred ccccc-c-----cchHHHHHH----HHHC------CCEEEEEC--CCChHhC
Confidence 99973 1 222222222 2223 36777765 8888764
No 228
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.57 E-value=0.0049 Score=60.99 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=73.2
Q ss_pred HHhhccCCCCCCCCCCeeEEEEEEEc---c--CCeEEEEEEEEeEEecCCEEEEecCCc---EEEEEEEEECCccceecC
Q 016750 166 EALDRIEITPRDPNGPFRMPIIDKFK---D--MGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAG 237 (383)
Q Consensus 166 ~~l~~~~~~~~~~~~p~~~~I~~~~~---~--~G~vv~G~V~sG~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~ 237 (383)
+.+..+.+|.....-.-+..|..+|+ + .|.++.++|..|.|+.|..+.+...+. .-++.||+.+.+++.++.
T Consensus 432 ~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~ 511 (537)
T 3izy_P 432 EELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVK 511 (537)
T ss_dssp HHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEE
T ss_pred HHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEc
Confidence 34444444444333334677888874 2 578999999999999999999999875 447888899999999999
Q ss_pred CCCeEEEEEec-CCccCceeeEEEe
Q 016750 238 PGENLRIRLSG-IEEEDILSGFVLS 261 (383)
Q Consensus 238 aG~~v~l~l~g-~~~~~i~~G~vl~ 261 (383)
.|.-|++.+.+ . .|++.||++-
T Consensus 512 ~g~ecgi~~~~~~--~~~~~gd~ie 534 (537)
T 3izy_P 512 TGMDCGLSLDEEK--IEFKVGDAII 534 (537)
T ss_dssp TTCEEEEESSSSC--SSCSCCCEEE
T ss_pred CCCEEEEEEcCcc--cCCCCCCEEE
Confidence 99999999986 4 4799999873
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.06 E-value=0.00016 Score=68.61 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=48.2
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCCh-------HHHHHHhh---hhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSY-------VPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~-------~~~~~~~~---~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
..|+|.+.....+. ..+.++||||..+. ....+..+ ...|.+++++++....+..++. .+
T Consensus 198 ~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~-------~l 267 (369)
T 3ec1_A 198 FPGTTLDMIEIPLE---SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLA-------RL 267 (369)
T ss_dssp CTTSSCEEEEEECS---TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTE-------EE
T ss_pred CCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEE-------EE
Confidence 34677766554332 24899999996432 11222333 5789999999996544321221 12
Q ss_pred HHHHHcCCCeEEEEEecCCC
Q 016750 83 MLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~ 102 (383)
..+...+.| +++++||+|.
T Consensus 268 ~~l~~~~~~-~~~v~~k~d~ 286 (369)
T 3ec1_A 268 DYIKGGRRS-FVCYMANELT 286 (369)
T ss_dssp EEEESSSEE-EEEEECTTSC
T ss_pred EEccCCCce-EEEEecCCcc
Confidence 233345666 8999999998
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.02 E-value=0.00019 Score=67.95 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=59.4
Q ss_pred hhcceeeccceeeeecCcEEEEEeCCCCCCh-------HHHHHHh---hhhcCEEEEEEECCCCccccccccCCchHHHH
Q 016750 13 IKGKTVEVGRAHFETETTRFTILDAPGHKSY-------VPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHV 82 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~~~i~liDtPG~~~~-------~~~~~~~---~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~ 82 (383)
..|+|.+.....+. . .+.++||||..+. ....+.. ....+..++++|+....+..++. .+
T Consensus 197 ~~gtT~~~~~~~~~--~-~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~-------~~ 266 (368)
T 3h2y_A 197 FPGTTLDLIDIPLD--E-ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLA-------RF 266 (368)
T ss_dssp CC----CEEEEESS--S-SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTE-------EE
T ss_pred CCCeecceEEEEec--C-CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceE-------EE
Confidence 34677666554332 2 3889999996432 1222222 35679999999986544322221 12
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEccccccccccc
Q 016750 83 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 83 ~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~ 149 (383)
..+...+.| +++++||+|. ... ...+...+.++ +.+|. .+.|.++.+..++.+
T Consensus 267 d~l~~~~~~-~~~v~nk~d~--~~~--~~~~~~~~~~~---~~~g~------~l~p~~~~~~~~~~~ 319 (368)
T 3h2y_A 267 DYVSGGRRA-FTCHFSNRLT--IHR--TKLEKADELYK---NHAGD------LLSPPTPEELENMPE 319 (368)
T ss_dssp EEEESSSEE-EEEEECTTSC--EEE--EEHHHHHHHHH---HHBTT------TBCSSCHHHHHTSCC
T ss_pred EEecCCCce-EEEEecCccc--ccc--ccHHHHHHHHH---HHhCC------ccCCCchhhHhhccC
Confidence 223345666 8999999998 432 22233333333 33332 456666665555544
No 231
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.60 E-value=0.023 Score=50.72 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=45.6
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+.+.+.|||||+...........+..+|.+|+|+....... ......++.++..+++.+-+++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTA-------VIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCH-------HHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchH-------HHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56789999999865432222223346899999998775432 244556667777788733389999873
No 232
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.43 E-value=0.016 Score=50.91 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=49.0
Q ss_pred ecCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 27 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 27 ~~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+.+.+.+||||+.... .+..++..+|.++++++++.... .......+.+...+++.+.+++||.+.
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSI-------KTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHH-------HHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 35678999999986543 34566788999999998865322 234455566777887778899999985
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.21 E-value=0.056 Score=45.81 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=45.5
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC-----CCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----VTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~-----i~~~ivviNK~D~ 102 (383)
+.+.+.++|||+.. ...+..++..+|.+++++..+... ......+..++..+ ++ +.+++|++|.
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~ 142 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--------FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIE 142 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--------HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--------HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCC
Confidence 35789999999976 345667788899999999886531 13444555555443 44 5789999995
No 234
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.18 E-value=0.028 Score=54.10 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=40.8
Q ss_pred cCcEEEEEeCCCCCChHHHHHH------hhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~------~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~ivviNK~ 100 (383)
.++.+.||||||...+...+.. .+..+|.+++|+|+..+. .....+.... ..++. -+++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 5788999999997654333322 233689999999998652 2223332222 34443 3589999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|.
T Consensus 251 D~ 252 (433)
T 2xxa_A 251 DG 252 (433)
T ss_dssp TS
T ss_pred CC
Confidence 97
No 235
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.14 E-value=0.026 Score=49.24 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=48.9
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+.+.+.++|||+... ..+...+..+|.+++|+.+..... ......+..++..+.+.+-+++|+.|.
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCL-------TDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHH-------HHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccH-------HHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 457899999998654 455677889999999998764321 245556667777777767789999996
No 236
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.10 E-value=0.043 Score=52.55 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=40.3
Q ss_pred EEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCce
Q 016750 56 IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQ 135 (383)
Q Consensus 56 ~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
+++|++|+..+.. ..+.+.+..+. .+++ +|+++||+|. .. +......++.+...++..| ++
T Consensus 151 ~v~fI~d~~~~l~-------~~Dieilk~L~-~~~~-vI~Vi~KtD~--Lt--~~E~~~l~~~I~~~L~~~g------i~ 211 (427)
T 2qag_B 151 CLYFIAPTGHSLK-------SLDLVTMKKLD-SKVN-IIPIIAKADA--IS--KSELTKFKIKITSELVSNG------VQ 211 (427)
T ss_dssp EEEEECCCC---C-------HHHHHHHHHTC-SCSE-EEEEESCGGG--SC--HHHHHHHHHHHHHHHBTTB------CC
T ss_pred EEEEEeCCCCCCC-------HHHHHHHHHHh-hCCC-EEEEEcchhc--cc--hHHHHHHHHHHHHHHHHcC------Cc
Confidence 4677788877653 34555555554 4665 9999999998 42 4556666666766555443 34
Q ss_pred EEEccc
Q 016750 136 FLPISG 141 (383)
Q Consensus 136 ~i~iSa 141 (383)
++.+|.
T Consensus 212 I~~is~ 217 (427)
T 2qag_B 212 IYQFPT 217 (427)
T ss_dssp CCCCC-
T ss_pred EEecCC
Confidence 555653
No 237
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.00 E-value=0.027 Score=50.05 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=48.4
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+++.+.|||||+... ..+...+..+|.+|+|+.+..... ......+..+...+.+.+-+++|+.|.
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSI-------TDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHH-------HHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 457899999998654 455667889999999998764321 244556666666677666689999996
No 238
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.89 E-value=0.016 Score=54.91 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=30.9
Q ss_pred hhcceeeccceeeeecC-----------------cEEEEEeCCCCCChHH-------HHHHhhhhcCEEEEEEECCC
Q 016750 13 IKGKTVEVGRAHFETET-----------------TRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 65 (383)
Q Consensus 13 ~rG~Ti~~~~~~~~~~~-----------------~~i~liDtPG~~~~~~-------~~~~~~~~ad~~ilvvda~~ 65 (383)
..++|++.....+..++ ..+.||||||+.++.+ .....++.+|++++|+|+.+
T Consensus 52 ~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 52 FPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 34677776666555433 3599999999876543 55678899999999999975
No 239
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.48 E-value=0.078 Score=45.47 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=46.8
Q ss_pred cCcEEEEEeCCCC-CChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc-CCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~-~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~-~i~~~ivviNK~D~ 102 (383)
+.+.+.++|||+. ... .+..++..+|.+|+++.++.... ......++.++.. +.+ +.+++|+.|.
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~vv~N~~~~ 132 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALAL-------DALMLTIETLQKLGNNR-FRILLTIIPP 132 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHH-------HHHHHHHHHHHHTCSSS-EEEEECSBCC
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhH-------HHHHHHHHHHHhccCCC-EEEEEEecCC
Confidence 4678999999997 443 34566788999999998865322 2445566666664 566 7789999997
No 240
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.65 E-value=0.13 Score=46.61 Aligned_cols=66 Identities=8% Similarity=0.093 Sum_probs=48.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+.+.|||||+..... ........+|.+|+|+.+..... ....+.++.+...+.+.+=+|+||+|.
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~-------~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTL-------KEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBH-------HHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 4679999999975442 23344567999999999876432 345566777888887766688999997
No 241
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=93.59 E-value=0.25 Score=43.59 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=42.4
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc------CCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~------~i~~~ivviNK~D 101 (383)
..+.+.+||||+..... +..++..+|.+|+++.++.... ......++.+... +++.+-+++|+.|
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~ 180 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYAL-------EGVAGLLATLEEVRAGLNPRLRLLGILVTMYD 180 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHH-------HHHHHHHHHHHHHHHHTCTTCEEEEEEEESBC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHH-------HHHHHHHHHHHHHHHHhCCCceEEEEEEEeEC
Confidence 56789999999975433 4556778999999999865321 1223333333321 4542237899998
Q ss_pred C
Q 016750 102 D 102 (383)
Q Consensus 102 ~ 102 (383)
.
T Consensus 181 ~ 181 (257)
T 1wcv_1 181 G 181 (257)
T ss_dssp T
T ss_pred C
Confidence 6
No 242
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.45 E-value=0.18 Score=48.07 Aligned_cols=109 Identities=13% Similarity=0.140 Sum_probs=62.6
Q ss_pred EEEEEeCCCCCC---hHHHHHH--hhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCC
Q 016750 31 RFTILDAPGHKS---YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 105 (383)
Q Consensus 31 ~i~liDtPG~~~---~~~~~~~--~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~ 105 (383)
+++++|+||... .....+. ++...|..++ +|...+. .|....+..+...+.| +++|+||.|+.-.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~--------kqrv~la~aL~~~~~p-~~lV~tkpdlllL 190 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK--------KNDIDIAKAISMMKKE-FYFVRTKVDSDIT 190 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC--------HHHHHHHHHHHHTTCE-EEEEECCHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc--------HHHHHHHHHHHhcCCC-eEEEEecCccccc
Confidence 689999999632 2333333 3444566655 7775422 4566666777777887 8899999987200
Q ss_pred -----CccHHHHHHHHHHHHHHH----HhcCCCCCCCceEEEccc--ccccccccccc
Q 016750 106 -----NWSKERYDEIESKMTPFL----KASGYNVKKDVQFLPISG--LMGLNMKTRVD 152 (383)
Q Consensus 106 -----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~iSa--~~g~~i~~~~~ 152 (383)
..+....+++.+.+.++. ...|.. ...++++|+ ..+.|++++.+
T Consensus 191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~---~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCTTSTTHHHHHH
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCcCCccCHHHHHH
Confidence 111111233444444443 333322 236899999 56666877543
No 243
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.33 E-value=0.12 Score=46.42 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=46.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+.+.|||||+..... .....+..+|.+|+|+.+..... ....+.++.+...+.+.+=+|+|++|.
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNK-------DEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCH-------HHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 4679999999965432 22334567999999999876432 345556666777787734388999997
No 244
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.22 E-value=0.061 Score=46.98 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=47.2
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC--CCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~--i~~~ivviNK~D~ 102 (383)
+.+.+.++|||+.... .+...+..+|.+++++....... ......++.++..+ .+.+-+++|+.|.
T Consensus 117 ~~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 117 SFYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSL-------RRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp HHCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHH-------HHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred hhCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 3578999999986533 45566888999999998764321 24555666777666 3447789999996
No 245
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.85 E-value=0.32 Score=43.84 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=43.3
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH------cCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~------~~i~~~ivviNK~D 101 (383)
+.+.+.|||||+..... +..++..+|.+|+++.+..... ......+..+.. .+++.+-+++|+.|
T Consensus 153 ~~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~ 223 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEEST-------NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVD 223 (298)
T ss_dssp GGCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCH-------HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESC
T ss_pred cCCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHH-------HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEEC
Confidence 45789999999975543 3445667999999999876432 123333444433 25553447899999
Q ss_pred C
Q 016750 102 D 102 (383)
Q Consensus 102 ~ 102 (383)
.
T Consensus 224 ~ 224 (298)
T 2oze_A 224 T 224 (298)
T ss_dssp T
T ss_pred C
Confidence 6
No 246
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.80 E-value=0.25 Score=44.89 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=48.0
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+.+.|||||+..... ........+|.+|+|+.+..... ....+.++.++..+++.+=+|+|++|.
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTA-------KEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCT-------THHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChH-------HHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 4679999999975432 22334568999999999876542 466677778888887644478999996
No 247
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.65 E-value=0.27 Score=43.52 Aligned_cols=65 Identities=9% Similarity=0.210 Sum_probs=45.1
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcC--CCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~--i~~~ivviNK~D~ 102 (383)
+.+.+.|||||+.... .+..++..+|.+|+++.++.... ......+..++..+ .+ +.+++|+.+.
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~-------~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAV-------ESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHH-------HHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHH-------HHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 4577999999996543 35566778999999999865332 13344556666664 44 6689999964
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.57 E-value=0.17 Score=48.44 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=39.4
Q ss_pred cCcEEEEEeCCCCCCh----HHHHH--HhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~--~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~ivviNK~ 100 (383)
.++.+.||||||.... +..+. ..+..+|.++||+|+..+. .....+.... ..++. -+++||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---------~av~~a~~f~~~l~i~--GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDEKVGVT--GLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---------HHHHHHHHHHHHTCCC--EEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---------HHHHHHHHHHhcCCce--EEEEeCc
Confidence 5678999999996543 22221 2223589999999997541 2233333222 34443 4689999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|.
T Consensus 248 D~ 249 (425)
T 2ffh_A 248 DG 249 (425)
T ss_dssp GG
T ss_pred CC
Confidence 97
No 249
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.00 E-value=0.13 Score=45.24 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=44.2
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCC--------CeEEEEEecC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV--------TKLLLVVNKM 100 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i--------~~~ivviNK~ 100 (383)
.+.+.++|||+... ..+..++..+|.+++|+++..... ......+..+...+. ..+-+++|+.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSV-------RDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHH-------HHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHH-------HHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 67899999998544 356677889999999998865321 233444455544331 2467899999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|.
T Consensus 184 ~~ 185 (260)
T 3q9l_A 184 NP 185 (260)
T ss_dssp CH
T ss_pred Cc
Confidence 85
No 250
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.92 E-value=0.21 Score=45.00 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=29.1
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
+.+.+.|||||+.. ...+..++..+|.+|+++....
T Consensus 102 ~~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 102 AECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HHCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred hcCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 35779999999975 4456778889999999999864
No 251
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.41 E-value=0.5 Score=43.55 Aligned_cols=93 Identities=12% Similarity=0.184 Sum_probs=54.8
Q ss_pred CcEEEEEeCCCCCC----hHHHHHH--hhhhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEEEEEecCC
Q 016750 29 TTRFTILDAPGHKS----YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 101 (383)
Q Consensus 29 ~~~i~liDtPG~~~----~~~~~~~--~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~ivviNK~D 101 (383)
++.+.++||+|... +...+.. ..-.+|-.++++|+..+ .+..+.+.... ..++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 45678899999643 3333322 12257999999998775 24444444443 45665 46899999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCCCCCCCceEEEcccccccccccc
Q 016750 102 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 150 (383)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~~i~~~ 150 (383)
.. .. .-.+. ......+ .|+..++ +|++++++
T Consensus 280 ~~-a~-----~G~~l----~~~~~~~------~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 280 AD-AR-----GGAAL----SISYVID------APILFVG--VGQGYDDL 310 (328)
T ss_dssp GC-SC-----CHHHH----HHHHHHT------CCEEEEE--CSSSTTCE
T ss_pred Cc-cc-----hhHHH----HHHHHHC------CCEEEEe--CCCCcccc
Confidence 72 21 11222 2223333 3676666 78888775
No 252
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.26 E-value=0.28 Score=45.06 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=37.5
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhh------------hhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEE
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGA------------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLL 94 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~------------~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~i 94 (383)
+++.+.||||||.......++..+ ..+|.+++|+|+..+. ...+.+.... ..++. =
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~---------~~l~~~~~~~~~~~i~--G 258 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQ---------NGVIQAEEFSKVADVS--G 258 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTH---------HHHHHHHHHTTTSCCC--E
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcH---------HHHHHHHHHhhcCCCc--E
Confidence 578899999999755422222111 2379999999998541 2222222211 12332 2
Q ss_pred EEEecCCC
Q 016750 95 LVVNKMDD 102 (383)
Q Consensus 95 vviNK~D~ 102 (383)
+++||+|.
T Consensus 259 vVltk~d~ 266 (320)
T 1zu4_A 259 IILTKMDS 266 (320)
T ss_dssp EEEECGGG
T ss_pred EEEeCCCC
Confidence 67999996
No 253
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.16 E-value=0.47 Score=43.27 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=38.4
Q ss_pred cCcEEEEEeCCCCCChHHHHH-------Hhh-----hhcCEEEEEEECCCCccccccccCCchHHHHH-HHHHcCCCeEE
Q 016750 28 ETTRFTILDAPGHKSYVPNMI-------SGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTLGVTKLL 94 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~-------~~~-----~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~-~~~~~~i~~~i 94 (383)
.+..+.++||||.......++ ..+ ..+|.+++|+|+..+. ...+.+. .....++. -
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~---------~~l~~a~~~~~~~~i~--g 253 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ---------NGLVQAKIFKEAVNVT--G 253 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH---------HHHHHHHHHHHHSCCC--E
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---------HHHHHHHHHHhcCCCC--E
Confidence 467799999999644322221 122 2378999999997531 2222222 22345665 3
Q ss_pred EEEecCCC
Q 016750 95 LVVNKMDD 102 (383)
Q Consensus 95 vviNK~D~ 102 (383)
+++||+|.
T Consensus 254 vVlTk~D~ 261 (306)
T 1vma_A 254 IILTKLDG 261 (306)
T ss_dssp EEEECGGG
T ss_pred EEEeCCCC
Confidence 57899997
No 254
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.45 E-value=0.47 Score=42.96 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=43.0
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc----CCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~----~i~~~ivviNK~D~ 102 (383)
+.+.+.+||||+..... .+..++..+|.+|+|+.++.... ......+..++.. +++.+-+++|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSI-------YAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHH-------HHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46789999999864422 23456788999999998764321 2344445555542 44423378999985
No 255
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.24 E-value=0.62 Score=41.61 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=45.1
Q ss_pred cCEEEEEEECC-CCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCCC
Q 016750 54 ADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 129 (383)
Q Consensus 54 ad~~ilvvda~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (383)
+++.++++|.. .+.. +.+.+.+..+... ++ +|+++||+|. . +++.....++.+...++..+..
T Consensus 112 al~~lllldep~~gL~-------~lD~~~l~~L~~~-~~-vI~Vi~K~D~--l--t~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 112 VHCCLYFISPTGHSLR-------PLDLEFMKHLSKV-VN-IIPVIAKADT--M--TLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp CCEEEEEECCCSSSCC-------HHHHHHHHHHHTT-SE-EEEEETTGGG--S--CHHHHHHHHHHHHHHHHHTTCC
T ss_pred eeeeeEEEecCCCcCC-------HHHHHHHHHHHhc-Cc-EEEEEecccc--C--CHHHHHHHHHHHHHHHHHcCcc
Confidence 68999999955 4442 5667777777665 65 9999999998 4 2455667777777777766543
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.53 E-value=0.68 Score=41.92 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=38.5
Q ss_pred cCcEEEEEeCCCCCCh----HHHHHHhh--hhcCEEEEEEECCCCccccccccCCchHHHHHHHH-HcCCCeEEEEEecC
Q 016750 28 ETTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 100 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~~~~~~--~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~~ivviNK~ 100 (383)
.++.+.|+||||.... +..+.... ..+|.+++|+|+..+. ...+.+.... ..++. =+++||+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~---------~~~~~~~~~~~~~~i~--givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDEKVGVT--GLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCC--EEEEECG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcH---------HHHHHHHHHhhcCCCC--EEEEECC
Confidence 5678999999986433 22222222 2589999999987531 2223333222 34443 3579999
Q ss_pred CC
Q 016750 101 DD 102 (383)
Q Consensus 101 D~ 102 (383)
|.
T Consensus 248 d~ 249 (295)
T 1ls1_A 248 DG 249 (295)
T ss_dssp GG
T ss_pred CC
Confidence 97
No 257
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=87.75 E-value=0.59 Score=44.17 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=39.7
Q ss_pred hcceeeccceeeeecC-----------------cEEEEEeCCCCCC-------hHHHHHHhhhhcCEEEEEEECCC
Q 016750 14 KGKTVEVGRAHFETET-----------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 14 rG~Ti~~~~~~~~~~~-----------------~~i~liDtPG~~~-------~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
.++|++.....+...+ ..+.++|+||... +.......++.+|.+++|+|+..
T Consensus 52 p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 52 PYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567887777776654 4689999999533 44566778889999999999875
No 258
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=87.74 E-value=0.71 Score=43.70 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=42.7
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCC----eEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT----KLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~----~~ivviNK~D~ 102 (383)
+++.+.|||||+.-. ..+..++..+|.+|+++..+.-...+..+.-....+.+..++..+.+ .++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 467899999998765 34666788999999999764321100000001334455566665533 24568899884
No 259
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=87.65 E-value=1.6 Score=37.19 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=39.7
Q ss_pred cCcEEEEEeCCCCCC--hHH--HHHHhhhh-cCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKS--YVP--NMISGASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~--~~~--~~~~~~~~-ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+++.+.+|||||.-. ... .....+.. .+.+|+|+++..+.. .+....++.++..+.+..=+++|+.|.
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~-------~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCI-------NHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHH-------HHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcH-------HHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 467899999997542 110 11111222 234788887754321 244555566666677634478999996
No 260
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=86.21 E-value=3.1 Score=38.45 Aligned_cols=86 Identities=10% Similarity=0.157 Sum_probs=50.3
Q ss_pred cCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCC--CCccHHHHHHHHHHHHHHHHhcCCCCC
Q 016750 54 ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT--VNWSKERYDEIESKMTPFLKASGYNVK 131 (383)
Q Consensus 54 ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (383)
.+.+++|.-+..-.. ..+++.+..++..|++..=+|+|++.... +.+...+.+.....+.++.+.++..
T Consensus 237 ~~~~vlV~~p~~~~~-------~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-- 307 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSI-------LESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDK-- 307 (349)
T ss_dssp TEEEEEEECSSHHHH-------HHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTS--
T ss_pred CceEEEEECCCccHH-------HHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCC--
Confidence 367777776654322 36677788899999997678899988632 1222333333344455555555432
Q ss_pred CCceEEEccccccccccc
Q 016750 132 KDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 132 ~~~~~i~iSa~~g~~i~~ 149 (383)
..-.+|.....-.|++.
T Consensus 308 -~l~~iPl~~~e~~g~~~ 324 (349)
T 3ug7_A 308 -VIAYVPLLRTEAKGIET 324 (349)
T ss_dssp -EEEEEECCSSCSCSHHH
T ss_pred -cEEEecCCCCCCCCHHH
Confidence 23456666555555554
No 261
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=85.92 E-value=2.5 Score=38.55 Aligned_cols=85 Identities=8% Similarity=0.060 Sum_probs=48.3
Q ss_pred CEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCC--CCccHHHHHHHHHHHHHHHHhcCCCCCC
Q 016750 55 DIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT--VNWSKERYDEIESKMTPFLKASGYNVKK 132 (383)
Q Consensus 55 d~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (383)
+.+++|+-+..-.. ..+++.+..++..|++..=+|+|++.-.. +.+...+.+...+.+.++.+.++..
T Consensus 223 ~~~vlV~~p~~~~~-------~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--- 292 (324)
T 3zq6_A 223 TSFKMVVIPEEMSI-------YESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDK--- 292 (324)
T ss_dssp EEEEEEECSSHHHH-------HHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTS---
T ss_pred CeEEEEeCCcccHH-------HHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCC---
Confidence 47777776654321 36677788889999996678899987531 2222333333334444444444322
Q ss_pred CceEEEccccccccccc
Q 016750 133 DVQFLPISGLMGLNMKT 149 (383)
Q Consensus 133 ~~~~i~iSa~~g~~i~~ 149 (383)
..-.+|.-...-.|++.
T Consensus 293 ~~~~iPl~~~e~~g~~~ 309 (324)
T 3zq6_A 293 VVAEVPLLKKEAKGIET 309 (324)
T ss_dssp EEEEEECCSSCSCSHHH
T ss_pred cEEEecCCCCCCCCHHH
Confidence 23345665554445544
No 262
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=85.15 E-value=0.63 Score=33.85 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=39.0
Q ss_pred EeEEecCCEEEE-ecCC--cEEEEEEEE-ECCccceec-CCCCeEEEEEecCCccCceeeEEE
Q 016750 203 SGSVREGDSLLV-MPNK--AQVKVLAIY-CDDNRVRHA-GPGENLRIRLSGIEEEDILSGFVL 260 (383)
Q Consensus 203 sG~l~~gd~v~i-~p~~--~~~~V~sI~-~~~~~v~~a-~aG~~v~l~l~g~~~~~i~~G~vl 260 (383)
...+.+||.|.+ .|.+ ...+|..|. ..+++++.| .+|+.+.|.+.. .+..|++|
T Consensus 27 rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~~----~~~~~dil 85 (89)
T 4he6_A 27 RNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVKR----PLFPYNMM 85 (89)
T ss_dssp SSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECSS----CCCTTCEE
T ss_pred cCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECCC----CCCCCCEE
Confidence 567899999985 4554 446677887 447889999 999999976652 24555554
No 263
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=85.05 E-value=1.6 Score=38.44 Aligned_cols=68 Identities=13% Similarity=0.007 Sum_probs=39.7
Q ss_pred cCcEEEEEeCCCCCChHHH-HHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHc----CCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~-~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~----~i~~~ivviNK~D~ 102 (383)
+.+.+.||||||....... .......+|.+|+++.++.... ......+..+... +++.+-+++|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMAL-------YAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHH-------HHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhH-------HHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 3578999999995322100 1111246999999998764321 1233334444442 45544678999874
No 264
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=84.91 E-value=1.8 Score=42.06 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=39.4
Q ss_pred cCcEEEEEeCCCCCCh----HHH---HHHhhh-----hcCEEEEEEECCCCccccccccCCchHHHHHHH-HHcCCCeEE
Q 016750 28 ETTRFTILDAPGHKSY----VPN---MISGAS-----QADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLL 94 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~----~~~---~~~~~~-----~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~~~i~~~i 94 (383)
.++.+.|+||+|.... +.. +...++ ..+-++||+|+..|- .....++.. ...++. .
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---------~al~~ak~f~~~~~it-g- 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---------NAVSQAKLFHEAVGLT-G- 442 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCS-E-
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---------HHHHHHHHHHhhcCCC-E-
Confidence 4567899999997432 221 222222 267899999998762 222333333 346776 3
Q ss_pred EEEecCCC
Q 016750 95 LVVNKMDD 102 (383)
Q Consensus 95 vviNK~D~ 102 (383)
+++||+|-
T Consensus 443 vIlTKLD~ 450 (503)
T 2yhs_A 443 ITLTKLDG 450 (503)
T ss_dssp EEEECGGG
T ss_pred EEEEcCCC
Confidence 68999996
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.99 E-value=0.67 Score=41.99 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=37.9
Q ss_pred cCcEEEEEeCCCCCChHH----HHHHhhh--hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHKSYVP----NMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~----~~~~~~~--~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
.+..+.|+||||...... .+...+. .+|.+++|+|++.+.. ...+.......+++. -+++||+|
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~--------~~~~~~~~~~~l~~~--giVltk~D 250 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE--------DMKHIVKRFSSVPVN--QYIFTKID 250 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH--------HHHHHTTTTSSSCCC--EEEEECTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH--------HHHHHHHHHhcCCCC--EEEEeCCC
Confidence 567899999999754432 2222232 3678899999876531 111222222223443 34679999
Q ss_pred C
Q 016750 102 D 102 (383)
Q Consensus 102 ~ 102 (383)
.
T Consensus 251 ~ 251 (296)
T 2px0_A 251 E 251 (296)
T ss_dssp T
T ss_pred c
Confidence 7
No 266
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=83.75 E-value=1.4 Score=39.47 Aligned_cols=68 Identities=15% Similarity=-0.024 Sum_probs=39.2
Q ss_pred cCcEEEEEeCCCCCChHHH-HHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHH----cCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~-~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~----~~i~~~ivviNK~D~ 102 (383)
+++.+.||||||....... .......+|.+++++.+..... ......++.+.. .+.+.+-+++|+.+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAM-------YAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHH-------HHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHH-------HHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 3678999999995321110 1112357999999998754221 122233344433 255544578899874
No 267
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=83.31 E-value=1.6 Score=43.76 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=38.5
Q ss_pred CcEEEEEeCCCCCC------------hHHHHHHh-hhh-cCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEE
Q 016750 29 TTRFTILDAPGHKS------------YVPNMISG-ASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 94 (383)
Q Consensus 29 ~~~i~liDtPG~~~------------~~~~~~~~-~~~-ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~i 94 (383)
.-.++|+|.||... -+..++.. +.. ..+++++++++.... .......+..+...|.+ .|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a------~~~~l~la~~v~~~g~r-tI 218 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA------TTEALSMAQEVDPEGDR-TI 218 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT------TCHHHHHHHHHCSSCCS-EE
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc------cHHHHHHHHHHhhcCCc-eE
Confidence 35699999998532 12233333 333 367777787765531 01222333444444666 78
Q ss_pred EEEecCCCC
Q 016750 95 LVVNKMDDH 103 (383)
Q Consensus 95 vviNK~D~~ 103 (383)
+|+||.|+.
T Consensus 219 ~VlTK~Dlv 227 (608)
T 3szr_A 219 GILTKPDLV 227 (608)
T ss_dssp EEEECGGGS
T ss_pred EEecchhhc
Confidence 999999993
No 268
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=82.62 E-value=2.2 Score=40.15 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=42.2
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCe----EEEEEecCCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK----LLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~----~ivviNK~D~ 102 (383)
+++.+.|||||...... +..++..+|.+|+++....-...+..+.-....+.+..++..+.+. ++.++|+.+.
T Consensus 243 ~~yD~ViiD~pp~~~~~--~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~ 319 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDAF--LKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSN 319 (398)
T ss_dssp TTCSEEEEEECSCCSHH--HHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECS
T ss_pred ccCCEEEEeCCCCccHH--HHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCC
Confidence 46789999999876443 5667779999999997643211000000012233444555554321 3557788774
No 269
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=81.71 E-value=4.2 Score=36.77 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=39.0
Q ss_pred CcEEEEEeCCCCCChHHHHH-------Hh-----hhhcCEEEEEEECCCCccccccccCCchHHHHHHH-HHcCCCeEEE
Q 016750 29 TTRFTILDAPGHKSYVPNMI-------SG-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLL 95 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~-------~~-----~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~~~i~~~iv 95 (383)
+..+.++||+|......... .+ ...++.+++++|+..+. ...+.+... +..++. ++
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~---------~~~~~~~~~~~~~~~t--~i 252 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ---------NGLEQAKKFHEAVGLT--GV 252 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT---------HHHHHHHHHHHHHCCS--EE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH---------HHHHHHHHHHHHcCCc--EE
Confidence 45677999999643221111 11 12478899999998752 344444433 345775 46
Q ss_pred EEecCCC
Q 016750 96 VVNKMDD 102 (383)
Q Consensus 96 viNK~D~ 102 (383)
++||.|.
T Consensus 253 ivTh~d~ 259 (304)
T 1rj9_A 253 IVTKLDG 259 (304)
T ss_dssp EEECTTS
T ss_pred EEECCcc
Confidence 8999997
No 270
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=77.77 E-value=2.4 Score=42.20 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=31.2
Q ss_pred hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 53 QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 53 ~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+|.+++|+.+..... ..+...+..++..|++..-+|+|+++-
T Consensus 489 ~~~~vvlV~~p~~~~~-------~~a~~~~~~l~~~g~~~~gvVvN~~~~ 531 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPV-------LEAANLQADLERAGIHPWGWIINNSLS 531 (589)
T ss_dssp TTEEEEEEECSSHHHH-------HHHHHHHHHHHHTTCCCCEEEEEEEST
T ss_pred CCCEEEEEeCCCccHH-------HHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 4588888887654332 355667778888898766788999985
No 271
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=76.18 E-value=0.96 Score=45.12 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=24.0
Q ss_pred cCcEEEEEeCCCCCChHH------HHHHhhh--hcCEEEEEEECCCCcc
Q 016750 28 ETTRFTILDAPGHKSYVP------NMISGAS--QADIGVLVISARKGEF 68 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~------~~~~~~~--~ad~~ilvvda~~g~~ 68 (383)
.+..+.|+||||..+..+ ..+.++. .++ ++|+|+..++.
T Consensus 89 ~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss--~lv~n~~~~i~ 135 (592)
T 1f5n_A 89 PGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSS--TFVYNSIGTIN 135 (592)
T ss_dssp TTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCS--EEEEEEESCSS
T ss_pred CCceEEEecCCCcCcccccchhHHHHHHHHHHHhcC--eEEEECCCCcc
Confidence 567899999999765322 1222222 234 67788776654
No 272
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=75.39 E-value=4.7 Score=37.35 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=31.9
Q ss_pred hcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 53 QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 53 ~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
.+|.+++|+.+..... ..+.+.+..+...+++..-+|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si-------~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSL-------YETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHH-------HHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchH-------HHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 5788999998764322 35667778888889987678899998
No 273
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=75.02 E-value=11 Score=34.60 Aligned_cols=65 Identities=12% Similarity=-0.000 Sum_probs=39.1
Q ss_pred CEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCC----CCccHHHHHHHHHHHHHHHHhc
Q 016750 55 DIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT----VNWSKERYDEIESKMTPFLKAS 126 (383)
Q Consensus 55 d~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~----~~~~~~~~~~~~~~~~~~~~~~ 126 (383)
..+++|.-+..-.. ..+++.+..++..|++..-+|+|++..+. ..+-..+++...+.+.++-+.+
T Consensus 223 t~~vlVt~pe~~~~-------~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~ 291 (334)
T 3iqw_A 223 TTFVCVCIPEFLSL-------YETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELY 291 (334)
T ss_dssp EEEEEEECSSHHHH-------HHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCccHH-------HHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhc
Confidence 36667666543221 35677888899999997778999987421 2233444444444454444443
No 274
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=74.86 E-value=14 Score=34.09 Aligned_cols=85 Identities=9% Similarity=0.004 Sum_probs=48.2
Q ss_pred CEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCCCC-----CCccHHHHHHHHHHHHHHHHhcCCC
Q 016750 55 DIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT-----VNWSKERYDEIESKMTPFLKASGYN 129 (383)
Q Consensus 55 d~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (383)
+.+++|.-+..-.. ..+.+.+..++..|++..-+|+|++.-.. ..+...+.+...+.+.++-+.+.-.
T Consensus 232 t~~vlVt~pe~~~~-------~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~ 304 (348)
T 3io3_A 232 TTFICVCISEFLSL-------YETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDY 304 (348)
T ss_dssp EEEEEEEESSHHHH-------HHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred eEEEEEecCCccHH-------HHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46777776654322 35677788889999987678999987532 1233344444444455544444210
Q ss_pred CCCCceEEEccccccccccc
Q 016750 130 VKKDVQFLPISGLMGLNMKT 149 (383)
Q Consensus 130 ~~~~~~~i~iSa~~g~~i~~ 149 (383)
.+-.+|.-+..=.|++.
T Consensus 305 ---~~~~~pl~~~e~~G~~~ 321 (348)
T 3io3_A 305 ---HLVKMPLLGCEIRGVEN 321 (348)
T ss_dssp ---EEEEEECCSSCCCSHHH
T ss_pred ---CEEEecCCCCCCCCHHH
Confidence 12334555544455554
No 275
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=70.47 E-value=19 Score=31.27 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=43.5
Q ss_pred cCcEEEEEeCCCCC-----ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHK-----SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~-----~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
..+.+.+||.||.- +...++.-+-....-+|||+++..+.. .++...++.++..+++ .=+++|+++-
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i-------~~~~lt~~~l~~~g~~-~GvIlN~v~~ 201 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLI-------NDCLLNDFLLKSHQLD-YKIAINLKGN 201 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHH-------HHHHHHHHHHHTSSSC-EEEEECCCTT
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHH-------HHHHHHHHHHHhCCCC-EEEEEeCCCC
Confidence 46789999999842 111111112223345889999887643 3555566667778888 7789999986
No 276
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=67.37 E-value=31 Score=31.20 Aligned_cols=41 Identities=15% Similarity=-0.004 Sum_probs=29.7
Q ss_pred CEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 55 DIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 55 d~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
+.+++|..+..... ..+.+.+..++..|++..-+++|+..-
T Consensus 222 t~~vlV~~pe~~~i-------~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSL-------YETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHH-------HHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchH-------HHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 46888887654332 356777788888899866678999983
No 277
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=65.77 E-value=14 Score=31.64 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=41.5
Q ss_pred cCcEEEEEeCCCCC-----ChHHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 28 ETTRFTILDAPGHK-----SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 28 ~~~~i~liDtPG~~-----~~~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.++.+.+||+||.- +-...+.-+.....-+|+|+++..+.. .++...+..+...+++-.=+++|+++-
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i-------~~~~~~~~~l~~~~~~i~GvIlN~~~~ 181 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCI-------NHTLLTINELNRHNIKLAGWIANCNDS 181 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHH-------HHHHHHHHHHHHTTCCEEEEEEEECCT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchH-------HHHHHHHHHHHhCCCcEEEEEEECcCC
Confidence 46789999999731 111111111222345889999976542 245555566677788744578999985
No 278
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=59.96 E-value=13 Score=36.90 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=29.3
Q ss_pred EEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCCC
Q 016750 56 IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 56 ~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D~ 102 (383)
.+++|+.+..... ..+...++.++..|++..-+|+|+++.
T Consensus 200 ~vvlV~~~~~~~~-------~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 200 RLVLVARLQKSTL-------QEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp EEEEEEESCHHHH-------HHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred EEEEEeCCCccHH-------HHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 6888888765332 356667778888888766678999985
No 279
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=56.65 E-value=30 Score=31.90 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=37.7
Q ss_pred CcEEEEEeCCCCCChHHHHH-------Hh-----hhhcCEEEEEEECCCCccccccccCCchHHHHHHH-HHcCCCeEEE
Q 016750 29 TTRFTILDAPGHKSYVPNMI-------SG-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLL 95 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~-------~~-----~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~~~i~~~iv 95 (383)
+....++||.|...+..... .+ ...++-++||+|++.+. .....+... +..++. ++
T Consensus 240 ~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttgl---------D~~~~~~~~~~~~g~t--~i 308 (359)
T 2og2_A 240 GYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGL---------NMLPQAREFNEVVGIT--GL 308 (359)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGG---------GGHHHHHHHHHHTCCC--EE
T ss_pred CCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCC---------CHHHHHHHHHHhcCCe--EE
Confidence 34467999999755422111 11 12477889999977653 122223333 346775 46
Q ss_pred EEecCCC
Q 016750 96 VVNKMDD 102 (383)
Q Consensus 96 viNK~D~ 102 (383)
++||+|-
T Consensus 309 iiThlD~ 315 (359)
T 2og2_A 309 ILTKLDG 315 (359)
T ss_dssp EEESCTT
T ss_pred EEecCcc
Confidence 8999996
No 280
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=55.72 E-value=33 Score=30.74 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=37.4
Q ss_pred cEEEEEeCCCCCChHHHHH-------Hhh-----hhcCEEEEEEECCCCccccccccCCchHHHHHHH-HHcCCCeEEEE
Q 016750 30 TRFTILDAPGHKSYVPNMI-------SGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLV 96 (383)
Q Consensus 30 ~~i~liDtPG~~~~~~~~~-------~~~-----~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~-~~~~i~~~ivv 96 (383)
....++||.|...+..... .++ ..++-.++|+|++.+. .....+... +..++. +++
T Consensus 184 ~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsgl---------D~~~~~~~~~~~~g~t--~ii 252 (302)
T 3b9q_A 184 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGL---------NMLPQAREFNEVVGIT--GLI 252 (302)
T ss_dssp CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGG---------GGHHHHHHHHHHTCCC--EEE
T ss_pred CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCc---------CHHHHHHHHHHhcCCC--EEE
Confidence 4467899999755422111 111 2478889999977654 122233333 356775 468
Q ss_pred EecCCC
Q 016750 97 VNKMDD 102 (383)
Q Consensus 97 iNK~D~ 102 (383)
++|+|-
T Consensus 253 iThlD~ 258 (302)
T 3b9q_A 253 LTKLDG 258 (302)
T ss_dssp EECCSS
T ss_pred EeCCCC
Confidence 999997
No 281
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=50.14 E-value=14 Score=33.99 Aligned_cols=35 Identities=11% Similarity=-0.075 Sum_probs=27.0
Q ss_pred CcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC
Q 016750 29 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 29 ~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
.+.+.|||||..-. .....++..+|.+|+++.++.
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCCh
Confidence 68899999997543 334556677999999998764
No 282
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=40.94 E-value=13 Score=33.15 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=12.7
Q ss_pred HhhcceeeccceeeeecCcEEEEEeCCCCC
Q 016750 12 RIKGKTVEVGRAHFETETTRFTILDAPGHK 41 (383)
Q Consensus 12 ~~rG~Ti~~~~~~~~~~~~~i~liDtPG~~ 41 (383)
...|+|.+.....+ +..+.++||||..
T Consensus 150 ~~~g~T~~~~~~~~---~~~~~l~DtpG~~ 176 (282)
T 1puj_A 150 DRPGITTSQQWVKV---GKELELLDTPGIL 176 (282)
T ss_dssp ---------CCEEE---TTTEEEEECCCCC
T ss_pred CCCCeeeeeEEEEe---CCCEEEEECcCcC
Confidence 34578877754332 4578999999974
No 283
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=39.81 E-value=62 Score=28.08 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=41.5
Q ss_pred cCcEEEEEeCCCCC-----Ch-HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 28 ETTRFTILDAPGHK-----SY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 28 ~~~~i~liDtPG~~-----~~-~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
.++.+.+||.||.- +. ..++.-+-....-+|||+|+..+.. .++...+..+...+++-.=+++||+.
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i-------~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTL-------NHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHH-------HHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccH-------HHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 46789999999742 11 1122222234567899999987642 24445556666778774456789985
No 284
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=39.16 E-value=21 Score=32.94 Aligned_cols=36 Identities=17% Similarity=0.022 Sum_probs=24.4
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECCC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 65 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~~ 65 (383)
..+.+.++|||.... ..+...+..+|.+++|+.++.
T Consensus 258 ~~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCCc
Confidence 456788888885332 345566777888888886643
No 285
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=37.89 E-value=53 Score=26.60 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=30.7
Q ss_pred HHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEE
Q 016750 47 MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 96 (383)
Q Consensus 47 ~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivv 96 (383)
=+.+++.||++|.++|....- ..|.--+-.+..+|+| ++++
T Consensus 75 D~~~i~~aD~vVA~ldg~~~D--------~GTa~EiGyA~algKP-Vv~l 115 (167)
T 1s2d_A 75 DLTGISNATCGVFLYDMDQLD--------DGSAFXIGFMRAMHKP-VILV 115 (167)
T ss_dssp HHHHHHHCSEEEEEEESSSCC--------HHHHHHHHHHHHTTCC-EEEE
T ss_pred HHHHHHhCCEEEEECCCCCCC--------CCceeehhhHhhCCCe-EEEE
Confidence 355788999999999965432 4566667888999998 6544
No 286
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=32.64 E-value=39 Score=27.04 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe
Q 016750 47 MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 98 (383)
Q Consensus 47 ~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN 98 (383)
=+.+++.||++|.++|....- ..|---+-.+..+|+| ++++..
T Consensus 72 D~~~i~~aD~vvA~ldg~~~D--------~GT~~EiGyA~A~gkP-Vv~~~~ 114 (157)
T 1f8y_A 72 DLNGIKTNDIMLGVYIPDEED--------VGLGMELGYALSQGKY-VLLVIP 114 (157)
T ss_dssp HHHHHHTSSEEEEECCGGGCC--------HHHHHHHHHHHHTTCE-EEEEEC
T ss_pred hHHHHHhCCEEEEEcCCCCCC--------ccHHHHHHHHHHCCCe-EEEEEc
Confidence 355788999999999964332 4566667889999998 655543
No 287
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=32.62 E-value=42 Score=27.06 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=32.4
Q ss_pred HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe
Q 016750 44 VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 98 (383)
Q Consensus 44 ~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN 98 (383)
...=+.++..||++|.++|....- .-|.-.+-.+..+|+| ++++.+
T Consensus 60 ~~~D~~~i~~aD~viA~ldg~~~D--------~Gt~~EiG~A~a~gkP-Vi~~~~ 105 (162)
T 3ehd_A 60 ALADTENVLASDLLVALLDGPTID--------AGVASEIGVAYAKGIP-VVALYT 105 (162)
T ss_dssp HHHHHHHHHTCSEEEEECCSSSCC--------HHHHHHHHHHHHTTCC-EEEECC
T ss_pred HHHHHHHHHHCCEEEEECCCCCCC--------CCHHHHHHHHHHCCCE-EEEEEc
Confidence 334456789999999999854321 3566667888999998 655544
No 288
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=31.17 E-value=1.1e+02 Score=31.79 Aligned_cols=54 Identities=20% Similarity=0.157 Sum_probs=34.4
Q ss_pred HHHHHHhhhhcCEEEEEEECCCCccccc-----cccCCchHHHHHHHHHcCCCeEEEEEe
Q 016750 44 VPNMISGASQADIGVLVISARKGEFETG-----FEKGGQTREHVMLAKTLGVTKLLLVVN 98 (383)
Q Consensus 44 ~~~~~~~~~~ad~~ilvvda~~g~~~~~-----~~~~~~~~~~~~~~~~~~i~~~ivviN 98 (383)
+.+...+++.||++|+++-.+.....++ +.+-+.-.+.++.+.+.+.| +|||++
T Consensus 564 ~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~~~~-tVVVl~ 622 (845)
T 3abz_A 564 IRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPN-TVIVNQ 622 (845)
T ss_dssp HHHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSC-EEEEEE
T ss_pred HHHHHHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHhCCC-EEEEEe
Confidence 4556677889999999996553222222 22223345677777778877 666665
No 289
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=30.44 E-value=46 Score=23.27 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHHcCCCeEEEEEecCCC
Q 016750 45 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 45 ~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~ivviNK~D~ 102 (383)
+++..+++.-.+-++++..+.+. .+..++ .++...++| ++.+-+|.+|
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~---------~~~~~i~~lc~~~~Ip-~~~v~sk~eL 65 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP---------ILTSSVVSLAEDQGIS-VSMVESMKKL 65 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH---------HHHHHHHHHHHHHTCC-EEEESCHHHH
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH---------HHHHHHHHHHHHcCCC-EEEECCHHHH
Confidence 56777788777888888776643 445544 667888999 6655455443
No 290
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=29.23 E-value=47 Score=26.70 Aligned_cols=48 Identities=19% Similarity=0.055 Sum_probs=32.4
Q ss_pred HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe
Q 016750 45 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 98 (383)
Q Consensus 45 ~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN 98 (383)
.+=+.++..||++|.++|.-.|.. . +..|-.-+..+..+|+| ++++.+
T Consensus 59 ~~d~~~i~~aD~vVA~ldpf~g~~---~--D~GTafEiGyA~AlgKP-Vi~l~~ 106 (161)
T 2f62_A 59 QKNIQMIKDCDAVIADLSPFRGHE---P--DCGTAFEVGCAAALNKM-VLTFTS 106 (161)
T ss_dssp HHHHHHHHHCSEEEEECCCCSSSS---C--CHHHHHHHHHHHHTTCE-EEEECS
T ss_pred HHHHHHHHhCCEEEEEecCCCCCC---C--CCcHHHHHHHHHHCCCE-EEEEEc
Confidence 344678999999999999533321 0 13455666788899998 665544
No 291
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.58 E-value=1.7e+02 Score=21.91 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=31.3
Q ss_pred CCeEEEEEEEEeEEecCCEEEEe-------cC-C-cEEEEEEEEECCccceecCCCCeEEE
Q 016750 193 MGTVVMGKVESGSVREGDSLLVM-------PN-K-AQVKVLAIYCDDNRVRHAGPGENLRI 244 (383)
Q Consensus 193 ~G~vv~G~V~sG~l~~gd~v~i~-------p~-~-~~~~V~sI~~~~~~v~~a~aG~~v~l 244 (383)
+|.+..|.|.|-. -.-++.+. |- + ..-+-+.+..|+++..++..||.|.|
T Consensus 30 rgr~l~G~VvS~K--M~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~n~~~vGD~V~I 88 (113)
T 3j20_R 30 HGRVFEGIVVSDK--PRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLI 88 (113)
T ss_dssp CSCEEEEEEEECC--STTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTSEEEE
T ss_pred eeEEEEEEEEecc--CCceEEEEEEEEEEcCcccEEEECceEEEEECCCCCCCCCCCEEEE
Confidence 6778888888752 23333332 21 1 12245567777776778999999985
No 292
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=27.09 E-value=1.2e+02 Score=30.76 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHHHhhhhcCEEEEEEECCCCcc----------ccccccCCchHHHHHHHHHcCCCeEEEEEe
Q 016750 44 VPNMISGASQADIGVLVISARKGEF----------ETGFEKGGQTREHVMLAKTLGVTKLLLVVN 98 (383)
Q Consensus 44 ~~~~~~~~~~ad~~ilvvda~~g~~----------~~~~~~~~~~~~~~~~~~~~~i~~~ivviN 98 (383)
.......++.+|++|+++....+.- ...+++-..-.+.++.+.+.+.| +|||++
T Consensus 418 ~~~a~~~A~~aDv~Iv~vg~~~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li~~v~~~~~~-~VVVl~ 481 (713)
T 3zyz_A 418 TSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVH 481 (713)
T ss_dssp HHHHHHHHTTCSEEEEEEEECCBCTTCCBTTBCSSCSCSSCSTTHHHHHHHHHHHCSC-EEEEEE
T ss_pred HHHHHHHhhcCCEEEEEecccCCCCccccccCCCCcccccCChhHHHHHHHHHHhCCC-eEEEEe
Confidence 5566777889999999996543321 01122212234667777777877 666665
No 293
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.60 E-value=72 Score=23.07 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHHcCCCeEEEE-EecCCC
Q 016750 45 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLV-VNKMDD 102 (383)
Q Consensus 45 ~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~ivv-iNK~D~ 102 (383)
+++..+++.-.+-++++..+.+ ..+..++ ..+...++| ++.+ .+|.+|
T Consensus 21 ~~v~kai~~gka~lViiA~D~~---------~~~~~~i~~~c~~~~ip-~~~~~~s~~eL 70 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKNAP---------KEIKDDIYYYAKLSDIP-VYEFEGTSVEL 70 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECCCC---------HHHHHHHHHHHHHTTCC-EEEECCCSCGG
T ss_pred HHHHHHHHcCCccEEEEeCCCC---------HHHHHHHHHHHHHcCCC-EEEeCCCHHHH
Confidence 4566677665666666666543 2455554 567788999 5555 788776
No 294
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=25.30 E-value=3.6e+02 Score=23.99 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=56.1
Q ss_pred CCEEEEecCCcEEEEEEEEECCccceecCCCCeEEEEEecCCccCceeeEEEecCCCCcccccEEEEEEEEecccccccc
Q 016750 209 GDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIF 288 (383)
Q Consensus 209 gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~g~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i 288 (383)
|+.+..........|. +.+....+..+..|+.+.+.+.+. .....|.+..-....-.....|.+++.+-+. ...+
T Consensus 196 g~~l~~i~~~~~l~v~-~~v~e~~~~~i~~G~~v~v~~~~~--~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~--~~~l 270 (359)
T 3lnn_A 196 TASLMTVADLSHVFVT-ANAQEKDLGHVYVGQSATVKFDAY--DDPQPGKVRYVGQILDADTRTTKVRMVFDNP--DGRL 270 (359)
T ss_dssp SCCSEEEECCSEEEEE-EEECGGGSTTCCTTCEEEEBCSSC--SSCEEEEEEECCCCCCTTSCCEEEEEEEECS--SCCC
T ss_pred CcceEEEecCCeEEEE-EEeCHHHHhhCCCCCeEEEEEcCC--CCcEEEEEEEEecccCCCCcEEEEEEEecCC--CCCc
Confidence 5554444444444443 566778888999999999887755 2345777665433222335667777766221 2458
Q ss_pred cCCcEEEEEEeeeE
Q 016750 289 TAGYKAVLHIHAVV 302 (383)
Q Consensus 289 ~~g~~~~~~~~~~~ 302 (383)
.+|....+.+....
T Consensus 271 ~~G~~~~v~i~~~~ 284 (359)
T 3lnn_A 271 RPGMFAQATFLSQP 284 (359)
T ss_dssp CTTCEEEEEEECCC
T ss_pred CCCCEEEEEEecCC
Confidence 89998888776553
No 295
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=25.22 E-value=1.3e+02 Score=25.43 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=32.9
Q ss_pred ccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEE-EEEEEEcCCC
Q 016750 329 VKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVA-VGKVTELPTV 379 (383)
Q Consensus 329 l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg-~G~V~~~~~~ 379 (383)
++.||+..+.+.-.+-+-.-+|+. |...+.-.|+-+| +|+|.++.+.
T Consensus 118 ik~~Dtv~idl~~~kI~d~ikf~~----G~l~mvtgG~n~GriG~I~~ie~~ 165 (213)
T 3kbg_A 118 IKVGDVLAVSVPDMKISEIIKMQP----GNKAYITAGSHVNQTGTISKIEAK 165 (213)
T ss_dssp CCTTCEEEEETTTCCEEEEECCST----TCEEEECSSTTTTCEEEEEEECCC
T ss_pred cccCCEEEEECCCCceeeEEEcCC----CCEEEEECCCcceEEEEEEEEEEc
Confidence 888998887775555444444442 7888877777666 8999988753
No 296
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=24.96 E-value=82 Score=28.25 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=25.0
Q ss_pred cCcEEEEEeCCCCCChHHHHHHhhhhcCEEEEEEECC
Q 016750 28 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 64 (383)
Q Consensus 28 ~~~~i~liDtPG~~~~~~~~~~~~~~ad~~ilvvda~ 64 (383)
+.+.+.++|+||-..... ...++..||.+|+++...
T Consensus 162 d~~D~v~iD~~~~~~~~~-~~~al~aAd~viIvt~~e 197 (314)
T 3fwy_A 162 DDTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND 197 (314)
T ss_dssp SSCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS
T ss_pred hcCceEeeccCCcchhhh-hHhHHhhCCeEEEEeCCc
Confidence 567789999997543221 124567799999999764
No 297
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.82 E-value=1.3e+02 Score=26.23 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=33.5
Q ss_pred cccCCCEEEEEEEECceEEeeeccCccccceEEEEeCCcEEE-EEEEEEcCC
Q 016750 328 FVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVA-VGKVTELPT 378 (383)
Q Consensus 328 ~l~~g~~~~v~~~~~~pi~~~~~~~~~~lgr~ilr~~~~tvg-~G~V~~~~~ 378 (383)
.++.||...+.+.-.+-+-+-+|+. |...+.-.|+-+| +|+|+++..
T Consensus 153 ~ik~~DTv~idl~~~kI~d~ikfe~----Gnl~mvtgG~n~GriG~I~~ie~ 200 (265)
T 3iz6_D 153 IIKANDTIKIDLETNKIVDFIKFDV----GNVVMVTGGRNTGRVGVIKNREK 200 (265)
T ss_dssp CCCTTCEEEECSSSCCEEEEECCST----TCEEEECSSSSCSCEEEEEEEEC
T ss_pred CcccCCEEEEECCCCceeeEEEccC----CCEEEEEcCCcceEEEEEEEEEE
Confidence 3888999888776555444444543 7888877877777 888888765
No 298
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=23.23 E-value=92 Score=24.93 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=32.0
Q ss_pred HHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEecCC
Q 016750 46 NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 101 (383)
Q Consensus 46 ~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviNK~D 101 (383)
.-+..++.||+++.++| .. +..+..-+..+..+|+| ++++.++.+
T Consensus 70 ~d~~~i~~aD~vva~~~-~~---------d~Gt~~EiGyA~algKP-Vi~l~~~~~ 114 (165)
T 2khz_A 70 QDLNWLQQADVVVAEVT-QP---------SLGVGYELGRAVALGKP-ILCLFRPQS 114 (165)
T ss_dssp HHHHHHHHCSEEEEECS-SC---------CHHHHHHHHHHHHTCSS-EEEEECTTT
T ss_pred HHHHHHHhCCEEEEECC-CC---------CCCHHHHHHHHHHCCCE-EEEEEcCCC
Confidence 34567899999999886 11 13566667788999999 766655543
No 299
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=21.81 E-value=1.1e+02 Score=29.33 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=29.8
Q ss_pred chHHHHHHHHHcCCCeEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhcCC
Q 016750 77 QTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 128 (383)
Q Consensus 77 ~~~~~~~~~~~~~i~~~ivviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (383)
....|++.++.+|+| ++|++|+.... .+++. +.+++.++..|.
T Consensus 348 NL~kHIen~~~fGvp-vVVaiN~F~tD----T~aEi----~~v~~~~~~~G~ 390 (543)
T 3do6_A 348 NLRVHVENLRKFNLP-VVVALNRFSTD----TEKEI----AYVVKECEKLGV 390 (543)
T ss_dssp HHHHHHHHHHHTTCC-EEEEEECCTTC----CHHHH----HHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCC-eEEEEeCCCCC----CHHHH----HHHHHHHHHcCC
Confidence 456899999999999 88999997651 22333 345556666664
No 300
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=21.50 E-value=1e+02 Score=24.53 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=30.9
Q ss_pred HHHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHHHHHHHcCCCeEEEEEe
Q 016750 44 VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 98 (383)
Q Consensus 44 ~~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ivviN 98 (383)
...-+..++.||+++.++|..+ .-|.--+..+..+|+| ++++.+
T Consensus 59 ~~~d~~~i~~aD~vvA~l~~~d----------~Gt~~EiG~A~algkP-V~~l~~ 102 (152)
T 4fyk_A 59 HEQNLNWLQQADVVVAEVTQPS----------LGVGYELGRAVALGKP-ILCLFR 102 (152)
T ss_dssp HHHHHHHHHHCSEEEEECSSCC----------HHHHHHHHHHHHTTCC-EEEEEC
T ss_pred HHHHHHHHHHCCEEEEeCCCCC----------CCHHHHHHHHHHcCCe-EEEEEe
Confidence 4445667899999999887211 3566667888899999 654444
No 301
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=20.18 E-value=56 Score=23.84 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=29.1
Q ss_pred HHHHHhhhhcCEEEEEEECCCCccccccccCCchHHHH-HHHHHcCCCeEEEEEecCCC
Q 016750 45 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKMDD 102 (383)
Q Consensus 45 ~~~~~~~~~ad~~ilvvda~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~ivviNK~D~ 102 (383)
+.+..+++.-.+-++++..+.+. .+..++ ..+...++| ++.+.+|.+|
T Consensus 25 ~~v~kai~~gka~lViiA~D~~~---------~~~~~i~~~c~~~~vp-~~~~~s~~eL 73 (101)
T 3v7q_A 25 DLVIKEIRNARAKLVLLTEDASS---------NTAKKVTDKCNYYKVP-YKKVESRAVL 73 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCH---------HHHHHHHHHHHHTTCC-EEEESCHHHH
T ss_pred hhhHHHHhcCceeEEEEeccccc---------cchhhhcccccccCCC-eeeechHHHH
Confidence 45566676656666667665543 355554 567788999 6665554443
Done!