Query 016751
Match_columns 383
No_of_seqs 151 out of 1475
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 02:29:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 3.9E-31 8.4E-36 234.3 26.7 209 116-347 1-230 (230)
2 KOG4441 Proteins containing BT 99.7 7.7E-15 1.7E-19 145.1 21.2 236 89-353 304-554 (571)
3 PHA02713 hypothetical protein; 99.7 1.8E-14 4E-19 142.9 22.6 241 89-355 275-543 (557)
4 PF07734 FBA_1: F-box associat 99.6 3E-14 6.5E-19 119.0 18.3 147 214-369 1-164 (164)
5 PF08268 FBA_3: F-box associat 99.5 2.4E-13 5.2E-18 108.9 14.8 110 214-329 1-118 (129)
6 PLN03215 ascorbic acid mannose 99.5 7.6E-12 1.6E-16 115.3 25.3 295 21-354 2-355 (373)
7 KOG4441 Proteins containing BT 99.5 8.4E-13 1.8E-17 130.7 19.4 195 133-353 301-507 (571)
8 PHA03098 kelch-like protein; P 99.5 8E-12 1.7E-16 124.5 24.7 212 117-353 291-519 (534)
9 PHA02713 hypothetical protein; 99.5 3.6E-12 7.8E-17 126.6 21.0 194 134-353 273-497 (557)
10 PHA02790 Kelch-like protein; P 99.5 6.5E-12 1.4E-16 122.9 21.9 197 119-352 270-477 (480)
11 PLN02153 epithiospecifier prot 99.3 6.9E-10 1.5E-14 104.2 24.9 219 116-354 28-293 (341)
12 TIGR03547 muta_rot_YjhT mutatr 99.3 1.6E-09 3.4E-14 102.1 24.0 220 116-353 13-306 (346)
13 PLN02193 nitrile-specifier pro 99.3 2.2E-09 4.8E-14 104.9 25.5 197 133-354 193-419 (470)
14 TIGR03548 mutarot_permut cycli 99.3 2.8E-09 6.1E-14 99.3 24.2 194 134-353 40-287 (323)
15 PRK14131 N-acetylneuraminic ac 99.2 4.2E-09 9.2E-14 100.2 23.7 224 116-353 34-328 (376)
16 PHA03098 kelch-like protein; P 99.2 5.9E-10 1.3E-14 111.1 18.0 193 134-353 265-472 (534)
17 PHA02790 Kelch-like protein; P 99.2 9.3E-10 2E-14 107.8 18.5 180 90-304 291-476 (480)
18 PLN02153 epithiospecifier prot 99.1 6E-08 1.3E-12 91.1 23.5 203 89-308 53-294 (341)
19 PRK14131 N-acetylneuraminic ac 99.1 9.8E-08 2.1E-12 90.8 24.2 161 181-351 189-374 (376)
20 PLN02193 nitrile-specifier pro 99.0 6E-08 1.3E-12 94.9 20.4 196 134-354 138-360 (470)
21 TIGR03547 muta_rot_YjhT mutatr 98.9 4.2E-07 9.2E-12 85.6 23.3 135 181-329 168-327 (346)
22 PF12937 F-box-like: F-box-lik 98.9 2.2E-09 4.7E-14 69.4 4.0 40 23-62 1-40 (47)
23 TIGR03548 mutarot_permut cycli 98.8 2.2E-07 4.7E-12 86.7 16.7 153 182-353 40-202 (323)
24 PF00646 F-box: F-box domain; 98.7 1.8E-08 4E-13 65.4 4.2 45 23-67 3-47 (48)
25 smart00256 FBOX A Receptor for 98.7 1.5E-08 3.3E-13 63.4 3.0 39 26-64 1-39 (41)
26 KOG4693 Uncharacterized conser 98.5 3E-06 6.5E-11 73.2 12.6 207 131-358 42-289 (392)
27 KOG1230 Protein containing rep 98.5 1E-05 2.2E-10 74.1 16.1 213 132-356 97-351 (521)
28 KOG0379 Kelch repeat-containin 98.1 0.00033 7.2E-09 68.7 18.5 207 134-356 89-312 (482)
29 KOG4693 Uncharacterized conser 97.9 0.00033 7.1E-09 60.9 13.2 139 180-329 156-308 (392)
30 KOG0379 Kelch repeat-containin 97.9 0.00049 1.1E-08 67.6 15.8 160 182-356 89-260 (482)
31 KOG1230 Protein containing rep 97.6 0.0038 8.2E-08 57.7 15.7 157 181-346 98-276 (521)
32 KOG2120 SCF ubiquitin ligase, 97.4 0.00011 2.3E-09 65.3 2.8 40 22-61 97-136 (419)
33 PF08450 SGL: SMP-30/Gluconola 97.1 0.19 4.2E-06 44.6 23.4 202 117-355 8-223 (246)
34 KOG0281 Beta-TrCP (transducin 97.1 0.012 2.6E-07 53.2 12.1 40 23-62 75-118 (499)
35 PF13964 Kelch_6: Kelch motif 97.0 0.0021 4.5E-08 41.7 5.1 40 214-255 7-47 (50)
36 PF01344 Kelch_1: Kelch motif; 96.6 0.0057 1.2E-07 38.9 5.1 40 214-255 7-47 (47)
37 KOG2997 F-box protein FBX9 [Ge 96.5 0.0016 3.5E-08 58.1 2.4 44 23-66 107-155 (366)
38 PF02191 OLF: Olfactomedin-lik 96.5 0.39 8.4E-06 42.8 17.4 127 214-355 74-213 (250)
39 smart00284 OLF Olfactomedin-li 96.4 0.14 3E-06 45.4 13.6 127 214-355 79-218 (255)
40 COG3055 Uncharacterized protei 95.7 1.1 2.5E-05 41.2 16.4 135 180-329 195-355 (381)
41 KOG4152 Host cell transcriptio 95.6 0.34 7.5E-06 46.4 13.3 198 133-353 57-310 (830)
42 PF07893 DUF1668: Protein of u 95.5 0.7 1.5E-05 43.3 15.4 148 112-281 68-253 (342)
43 PF07646 Kelch_2: Kelch motif; 95.3 0.055 1.2E-06 34.8 5.1 40 214-253 7-46 (49)
44 KOG0274 Cdc4 and related F-box 95.2 3.8 8.3E-05 40.9 25.2 241 21-295 106-360 (537)
45 PF13964 Kelch_6: Kelch motif 95.2 0.067 1.4E-06 34.5 5.2 38 117-154 8-49 (50)
46 PRK11138 outer membrane biogen 94.7 4.2 9.2E-05 38.9 18.6 105 214-350 252-358 (394)
47 PF13360 PQQ_2: PQQ-like domai 94.6 2.9 6.2E-05 36.5 18.7 191 119-351 35-236 (238)
48 COG3055 Uncharacterized protei 94.4 0.15 3.2E-06 46.8 7.1 124 180-311 112-268 (381)
49 KOG0310 Conserved WD40 repeat- 94.4 1.2 2.6E-05 42.4 13.1 197 139-381 8-213 (487)
50 PF07250 Glyoxal_oxid_N: Glyox 94.1 1.4 3E-05 39.0 12.3 168 182-374 47-225 (243)
51 PF13418 Kelch_4: Galactose ox 93.9 0.12 2.6E-06 33.0 4.1 40 214-255 7-48 (49)
52 smart00612 Kelch Kelch domain. 93.1 0.11 2.3E-06 32.6 2.9 27 180-207 14-40 (47)
53 COG4257 Vgb Streptogramin lyas 92.9 3 6.6E-05 37.2 12.2 126 110-259 189-318 (353)
54 PF01344 Kelch_1: Kelch motif; 92.6 0.94 2E-05 28.4 6.9 44 264-309 4-47 (47)
55 KOG2055 WD40 repeat protein [G 92.5 10 0.00022 36.2 16.0 144 180-350 234-379 (514)
56 smart00612 Kelch Kelch domain. 92.4 0.41 9E-06 29.7 5.0 35 221-259 2-37 (47)
57 KOG3545 Olfactomedin and relat 92.1 7.8 0.00017 34.1 15.1 144 191-355 56-212 (249)
58 TIGR01640 F_box_assoc_1 F-box 92.1 3.4 7.4E-05 36.1 12.2 124 216-355 3-137 (230)
59 PLN02772 guanylate kinase 91.8 1.1 2.3E-05 42.6 8.8 75 214-296 30-108 (398)
60 PF07893 DUF1668: Protein of u 91.7 5.1 0.00011 37.6 13.4 106 238-352 87-214 (342)
61 PF07646 Kelch_2: Kelch motif; 90.7 0.53 1.2E-05 30.0 4.2 43 264-308 4-48 (49)
62 PF07762 DUF1618: Protein of u 90.6 2.3 5E-05 33.6 8.6 74 238-312 7-100 (131)
63 KOG0316 Conserved WD40 repeat- 90.1 12 0.00027 32.6 13.9 188 116-350 24-218 (307)
64 PRK11138 outer membrane biogen 88.4 24 0.00052 33.7 20.1 188 119-349 119-316 (394)
65 PF13415 Kelch_3: Galactose ox 88.4 1.8 3.9E-05 27.5 5.3 40 218-259 1-41 (49)
66 TIGR03300 assembly_YfgL outer 87.4 26 0.00057 33.1 20.0 111 214-356 237-350 (377)
67 PF13418 Kelch_4: Galactose ox 85.6 1.3 2.9E-05 28.0 3.5 22 132-153 28-49 (49)
68 KOG0299 U3 snoRNP-associated p 85.2 36 0.00078 32.6 19.2 61 263-329 382-442 (479)
69 KOG4152 Host cell transcriptio 85.1 0.66 1.4E-05 44.6 2.5 99 192-306 18-124 (830)
70 KOG2437 Muskelin [Signal trans 85.0 1.7 3.6E-05 41.9 5.1 136 136-280 232-394 (723)
71 PF08450 SGL: SMP-30/Gluconola 83.2 31 0.00068 30.3 16.4 110 214-352 5-129 (246)
72 KOG0294 WD40 repeat-containing 83.1 28 0.00061 31.8 11.6 93 214-329 48-144 (362)
73 COG2706 3-carboxymuconate cycl 82.6 41 0.00089 31.2 17.9 157 180-353 166-331 (346)
74 PF06433 Me-amine-dh_H: Methyl 82.1 32 0.0007 32.0 12.0 116 218-351 195-326 (342)
75 PF10282 Lactonase: Lactonase, 82.0 45 0.00097 31.2 25.2 171 158-353 147-332 (345)
76 PF13360 PQQ_2: PQQ-like domai 81.5 34 0.00074 29.5 18.5 138 182-351 4-146 (238)
77 KOG4341 F-box protein containi 81.3 1 2.3E-05 42.5 2.2 36 24-59 73-108 (483)
78 PF14583 Pectate_lyase22: Olig 81.0 52 0.0011 31.3 18.9 218 118-352 44-279 (386)
79 PF13415 Kelch_3: Galactose ox 80.1 2.2 4.8E-05 27.1 2.9 27 180-207 18-44 (49)
80 COG4257 Vgb Streptogramin lyas 79.8 46 0.001 30.0 17.5 120 214-354 195-314 (353)
81 KOG1310 WD40 repeat protein [G 78.5 48 0.001 32.8 12.2 119 118-249 59-182 (758)
82 TIGR03300 assembly_YfgL outer 78.4 61 0.0013 30.6 21.4 187 119-349 104-301 (377)
83 COG4946 Uncharacterized protei 77.1 74 0.0016 30.9 13.2 125 59-197 263-398 (668)
84 PF05096 Glu_cyclase_2: Glutam 75.9 59 0.0013 29.2 12.9 111 217-354 54-167 (264)
85 KOG1963 WD40 repeat protein [G 75.9 1E+02 0.0023 32.0 19.1 106 236-352 431-546 (792)
86 PF10282 Lactonase: Lactonase, 74.6 75 0.0016 29.7 19.9 212 115-353 43-285 (345)
87 cd01206 Homer Homer type EVH1 73.3 11 0.00024 28.5 5.3 41 133-179 11-52 (111)
88 TIGR03075 PQQ_enz_alc_DH PQQ-d 73.1 60 0.0013 32.5 12.2 116 214-351 65-195 (527)
89 PRK11028 6-phosphogluconolacto 72.5 80 0.0017 29.1 20.6 147 180-352 56-214 (330)
90 PF05096 Glu_cyclase_2: Glutam 72.3 74 0.0016 28.6 15.2 140 180-354 67-213 (264)
91 cd01207 Ena-Vasp Enabled-VASP- 71.8 14 0.00031 28.3 5.7 43 133-178 9-51 (111)
92 TIGR03074 PQQ_membr_DH membran 71.5 1E+02 0.0022 32.5 13.6 29 214-251 190-220 (764)
93 KOG1274 WD40 repeat protein [G 71.2 1.4E+02 0.0031 31.4 17.5 144 134-304 27-178 (933)
94 COG1520 FOG: WD40-like repeat 70.9 95 0.0021 29.3 13.9 139 182-351 36-177 (370)
95 PF13854 Kelch_5: Kelch motif 69.0 13 0.00029 22.6 4.3 33 263-295 6-39 (42)
96 PF03088 Str_synth: Strictosid 68.9 13 0.00028 27.3 4.8 68 215-292 5-86 (89)
97 KOG0289 mRNA splicing factor [ 68.0 1.2E+02 0.0025 29.2 12.7 116 214-353 354-470 (506)
98 PF13570 PQQ_3: PQQ-like domai 67.9 8.3 0.00018 23.1 3.1 24 214-246 17-40 (40)
99 PLN00181 protein SPA1-RELATED; 66.8 1.8E+02 0.0039 30.8 24.0 183 131-347 553-740 (793)
100 PTZ00420 coronin; Provisional 65.3 1.6E+02 0.0035 29.8 25.1 195 131-352 95-300 (568)
101 KOG0271 Notchless-like WD40 re 65.0 1.3E+02 0.0028 28.5 11.4 35 131-165 177-211 (480)
102 KOG0266 WD40 repeat-containing 64.2 1.5E+02 0.0032 29.0 19.2 201 115-348 209-412 (456)
103 COG2706 3-carboxymuconate cycl 63.0 1.3E+02 0.0028 28.0 13.4 117 220-352 53-182 (346)
104 smart00564 PQQ beta-propeller 62.6 25 0.00054 19.6 4.4 26 322-351 5-30 (33)
105 TIGR03866 PQQ_ABC_repeats PQQ- 62.6 1.1E+02 0.0024 27.0 23.8 201 121-358 85-293 (300)
106 PLN02919 haloacid dehalogenase 61.9 2.5E+02 0.0055 30.9 24.3 202 119-349 634-892 (1057)
107 PF12458 DUF3686: ATPase invol 61.3 1.2E+02 0.0026 29.1 10.6 136 119-294 237-384 (448)
108 KOG0291 WD40-repeat-containing 61.0 2.1E+02 0.0045 29.7 20.4 109 214-347 440-552 (893)
109 KOG1332 Vesicle coat complex C 59.9 1.3E+02 0.0027 26.8 12.4 124 170-308 174-297 (299)
110 PF13013 F-box-like_2: F-box-l 56.9 9.5 0.00021 29.1 2.3 30 22-51 21-50 (109)
111 PF02897 Peptidase_S9_N: Proly 55.9 1.9E+02 0.0041 27.6 24.1 161 169-353 237-412 (414)
112 KOG4378 Nuclear protein COP1 [ 55.8 84 0.0018 30.7 8.7 60 286-348 187-283 (673)
113 KOG0647 mRNA export protein (c 55.0 97 0.0021 28.3 8.5 76 272-358 40-115 (347)
114 PF01011 PQQ: PQQ enzyme repea 54.0 28 0.00061 20.6 3.7 23 325-351 2-24 (38)
115 KOG0291 WD40-repeat-containing 53.3 2.8E+02 0.0061 28.8 19.4 39 314-355 584-623 (893)
116 KOG2502 Tub family proteins [G 52.7 8.7 0.00019 35.4 1.8 39 21-59 43-89 (355)
117 KOG0649 WD40 repeat protein [G 52.7 92 0.002 27.6 7.8 63 286-352 81-151 (325)
118 PF03178 CPSF_A: CPSF A subuni 52.6 1.9E+02 0.0041 26.6 15.7 100 237-355 62-169 (321)
119 PF07250 Glyoxal_oxid_N: Glyox 50.9 1.1E+02 0.0024 27.1 8.3 86 238-329 47-134 (243)
120 KOG0286 G-protein beta subunit 49.7 2.1E+02 0.0045 26.2 19.0 194 119-348 65-262 (343)
121 KOG0294 WD40 repeat-containing 47.8 2.3E+02 0.005 26.2 12.6 134 132-295 148-282 (362)
122 PF14870 PSII_BNR: Photosynthe 45.5 2.5E+02 0.0054 25.9 15.1 143 184-354 38-183 (302)
123 KOG2321 WD40 repeat protein [G 44.7 2.1E+02 0.0044 28.8 9.5 107 220-352 147-265 (703)
124 KOG3926 F-box proteins [Amino 44.2 47 0.001 29.7 4.8 38 22-59 201-239 (332)
125 PLN02919 haloacid dehalogenase 43.5 4.9E+02 0.011 28.8 24.9 211 115-353 574-841 (1057)
126 PF15408 PH_7: Pleckstrin homo 43.4 13 0.00029 26.6 1.2 25 40-64 76-100 (104)
127 KOG0289 mRNA splicing factor [ 43.1 3.2E+02 0.0069 26.4 17.5 105 180-311 368-475 (506)
128 KOG2048 WD40 repeat protein [G 41.5 4E+02 0.0088 27.2 12.3 112 214-349 435-552 (691)
129 PRK04043 tolB translocation pr 41.2 3.4E+02 0.0074 26.2 21.6 191 132-354 212-409 (419)
130 PF09372 PRANC: PRANC domain; 40.2 40 0.00087 24.9 3.5 26 20-45 69-94 (97)
131 PTZ00421 coronin; Provisional 38.7 4.1E+02 0.0088 26.4 24.6 202 120-351 87-296 (493)
132 PF12768 Rax2: Cortical protei 38.4 2.9E+02 0.0063 25.1 9.2 63 180-253 15-80 (281)
133 KOG2445 Nuclear pore complex c 37.9 2.6E+02 0.0056 25.7 8.5 86 263-353 116-217 (361)
134 PF13859 BNR_3: BNR repeat-lik 37.2 3.1E+02 0.0066 25.4 9.3 81 214-304 126-211 (310)
135 PF06058 DCP1: Dcp1-like decap 36.1 63 0.0014 25.2 4.0 21 338-358 30-50 (122)
136 PTZ00421 coronin; Provisional 35.6 4.5E+02 0.0099 26.1 13.6 64 273-349 139-202 (493)
137 TIGR03866 PQQ_ABC_repeats PQQ- 35.5 3.1E+02 0.0066 24.1 23.3 180 131-349 9-191 (300)
138 PRK00178 tolB translocation pr 34.8 4.2E+02 0.0091 25.4 22.2 188 132-353 222-414 (430)
139 PRK04043 tolB translocation pr 34.6 4.3E+02 0.0094 25.5 12.3 102 237-354 213-318 (419)
140 PRK04792 tolB translocation pr 33.1 4.7E+02 0.01 25.5 22.5 189 131-353 240-433 (448)
141 KOG0301 Phospholipase A2-activ 32.5 5.8E+02 0.012 26.3 11.3 59 271-345 230-288 (745)
142 KOG0265 U5 snRNP-specific prot 32.2 2.5E+02 0.0055 25.7 7.5 67 271-349 58-124 (338)
143 KOG4649 PQQ (pyrrolo-quinoline 32.1 3.8E+02 0.0083 24.2 9.1 89 237-348 33-126 (354)
144 cd00837 EVH1 EVH1 (Enabled, Va 30.7 1.7E+02 0.0036 22.0 5.5 40 133-178 9-48 (104)
145 KOG0639 Transducin-like enhanc 30.3 2.6E+02 0.0057 27.6 7.7 102 237-349 440-543 (705)
146 KOG2055 WD40 repeat protein [G 30.3 5.3E+02 0.011 25.2 15.2 143 123-295 273-418 (514)
147 TIGR02800 propeller_TolB tol-p 30.1 4.8E+02 0.01 24.7 20.0 189 130-352 167-361 (417)
148 PF14157 YmzC: YmzC-like prote 29.1 90 0.0019 21.1 3.2 15 338-352 42-56 (63)
149 KOG0292 Vesicle coat complex C 29.0 3E+02 0.0065 29.3 8.3 55 286-348 228-283 (1202)
150 KOG0647 mRNA export protein (c 28.7 4.7E+02 0.01 24.1 10.1 90 237-346 94-185 (347)
151 KOG2096 WD40 repeat protein [G 27.8 1.8E+02 0.004 26.8 6.0 13 286-298 108-120 (420)
152 KOG0293 WD40 repeat-containing 26.6 5.9E+02 0.013 24.6 15.0 146 171-352 324-477 (519)
153 TIGR02658 TTQ_MADH_Hv methylam 26.4 5.6E+02 0.012 24.2 25.1 206 113-352 108-338 (352)
154 COG4946 Uncharacterized protei 26.1 6.4E+02 0.014 24.8 15.1 147 180-353 286-439 (668)
155 KOG0300 WD40 repeat-containing 25.7 4.3E+02 0.0093 24.4 7.8 59 286-353 378-436 (481)
156 KOG0646 WD40 repeat protein [G 25.6 6.4E+02 0.014 24.6 15.1 53 315-370 280-334 (476)
157 KOG0279 G protein beta subunit 25.4 5.2E+02 0.011 23.5 20.1 156 113-295 99-263 (315)
158 PF02191 OLF: Olfactomedin-lik 25.4 4.9E+02 0.011 23.2 14.5 40 214-257 176-215 (250)
159 PRK13684 Ycf48-like protein; P 25.2 5.6E+02 0.012 23.8 17.6 102 182-307 65-169 (334)
160 KOG1332 Vesicle coat complex C 25.2 5E+02 0.011 23.2 14.7 198 131-353 78-295 (299)
161 KOG1273 WD40 repeat protein [G 24.7 5.7E+02 0.012 23.8 9.3 108 218-351 34-189 (405)
162 PLN02772 guanylate kinase 24.6 2.9E+02 0.0063 26.5 7.0 62 265-329 28-92 (398)
163 KOG0295 WD40 repeat-containing 24.2 5.5E+02 0.012 24.2 8.4 65 272-350 304-369 (406)
164 TIGR03032 conserved hypothetic 23.9 2.5E+02 0.0054 26.1 6.2 53 214-281 208-261 (335)
165 KOG1539 WD repeat protein [Gen 23.6 9E+02 0.019 25.7 11.4 68 214-296 455-525 (910)
166 PTZ00420 coronin; Provisional 23.6 6.7E+02 0.015 25.5 9.8 55 286-350 148-202 (568)
167 KOG0281 Beta-TrCP (transducin 23.0 6.4E+02 0.014 23.7 9.5 65 214-295 325-389 (499)
168 PF02239 Cytochrom_D1: Cytochr 22.9 6.6E+02 0.014 23.8 19.9 190 131-352 14-209 (369)
169 PF13088 BNR_2: BNR repeat-lik 22.2 5.4E+02 0.012 22.6 15.2 130 182-328 134-275 (275)
170 PF12217 End_beta_propel: Cata 21.0 5.9E+02 0.013 23.0 7.6 61 215-280 197-258 (367)
171 PF08268 FBA_3: F-box associat 20.7 4E+02 0.0087 20.5 9.5 68 181-255 20-92 (129)
172 KOG1240 Protein kinase contain 20.6 8.5E+02 0.018 27.3 9.9 56 286-348 1173-1228(1431)
173 TIGR00244 transcriptional regu 20.6 48 0.001 26.7 0.9 33 24-56 105-137 (147)
174 KOG0319 WD40-repeat-containing 20.5 9.8E+02 0.021 24.9 9.9 122 203-351 18-141 (775)
175 TIGR02658 TTQ_MADH_Hv methylam 20.3 7.4E+02 0.016 23.4 14.1 70 233-312 73-148 (352)
176 PF00568 WH1: WH1 domain; Int 20.2 2.2E+02 0.0048 21.6 4.5 38 133-177 16-54 (111)
177 PF07861 WND: WisP family N-Te 20.2 4.1E+02 0.0089 22.4 6.2 32 112-146 32-63 (263)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=3.9e-31 Score=234.32 Aligned_cols=209 Identities=29% Similarity=0.559 Sum_probs=160.5
Q ss_pred EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCC---CC--ceeEEEeccCCCCCCeEEEEEEe------cCeEE
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN---PR--YLGFGVNSVSGHLDDFKVVTISV------NADAE 184 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~---~~--~~~~g~d~~~~~~~~ykVv~~~~------~~~~~ 184 (383)
+++||||||+.. ...++||||+||+++.||+++.. .. .++||||+. +++||||++.. ...++
T Consensus 1 ~~sCnGLlc~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~---~~~YKVv~~~~~~~~~~~~~~~ 73 (230)
T TIGR01640 1 VVPCDGLICFSY----GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPI---EKQYKVLCFSDRSGNRNQSEHQ 73 (230)
T ss_pred CcccceEEEEec----CCcEEEECCCCCCEEecCCCCCcccccccceEEEeeccc---CCcEEEEEEEeecCCCCCccEE
Confidence 379999999886 36899999999999999987652 12 279999998 99999999975 36899
Q ss_pred EEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCC-cEEEEEECCCCeee-EeCCCCCCCCC-
Q 016751 185 VYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCP-WLIVSFDFAKEIFQ-TVMMPYDLSTD- 261 (383)
Q Consensus 185 vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~-~~il~fD~~~~~~~-~i~lP~~~~~~- 261 (383)
||++++++||.+. ..+... ..... +|++||.+||++... .... ..|++||+.+|+|+ .+++| .....
T Consensus 74 Vys~~~~~Wr~~~-~~~~~~-~~~~~---~v~~~G~lyw~~~~~----~~~~~~~IvsFDl~~E~f~~~i~~P-~~~~~~ 143 (230)
T TIGR01640 74 VYTLGSNSWRTIE-CSPPHH-PLKSR---GVCINGVLYYLAYTL----KTNPDYFIVSFDVSSERFKEFIPLP-CGNSDS 143 (230)
T ss_pred EEEeCCCCccccc-cCCCCc-cccCC---eEEECCEEEEEEEEC----CCCCcEEEEEEEcccceEeeeeecC-cccccc
Confidence 9999999999988 333221 11222 899999999999764 1122 38999999999999 48888 54432
Q ss_pred CCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-----eeEEEEEeeCCcEEEEEEeeCC-
Q 016751 262 DADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECRHG- 335 (383)
Q Consensus 262 ~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~- 335 (383)
.....|++++|+|+++...... ..++||+|+++++ .+|++..+|+.... ...+.++.++|+|++. . ..
T Consensus 144 ~~~~~L~~~~G~L~~v~~~~~~--~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~--~-~~~ 217 (230)
T TIGR01640 144 VDYLSLINYKGKLAVLKQKKDT--NNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLC--C-EDE 217 (230)
T ss_pred ccceEEEEECCEEEEEEecCCC--CcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEE--e-CCC
Confidence 2346899999999999876431 4699999998765 45999999985322 2347888889999998 5 32
Q ss_pred -ceEEEEEeCCCC
Q 016751 336 -GYGLLVYNPHSD 347 (383)
Q Consensus 336 -~~~~~~yd~~t~ 347 (383)
+..++.||++|+
T Consensus 218 ~~~~~~~y~~~~~ 230 (230)
T TIGR01640 218 NPFYIFYYNVGEN 230 (230)
T ss_pred CceEEEEEeccCC
Confidence 324999999985
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.67 E-value=7.7e-15 Score=145.11 Aligned_cols=236 Identities=17% Similarity=0.191 Sum_probs=163.1
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCC----CCceEEEEccCccceeecCCCCCCCCceeEEEec
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNS 164 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~----~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~ 164 (383)
..|++....|..+.....+ .....++..+|.|...++.+ ....+..+||.+.+|..+|++...+..++.+.
T Consensus 304 e~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~-- 378 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV-- 378 (571)
T ss_pred EEecCCcCcEeecCCCCcc---cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--
Confidence 3567777777766544332 12334566777777766532 23478999999999999999998875533331
Q ss_pred cCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcE
Q 016751 165 VSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWL 238 (383)
Q Consensus 165 ~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~ 238 (383)
-+.++.++.. ..++|.|+..+++|..++ +|+..+..+. ++.++|.+|.+++.. ........
T Consensus 379 -----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~g-----v~~~~g~iYi~GG~~--~~~~~l~s 445 (571)
T KOG4441|consen 379 -----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHG-----VAVLGGKLYIIGGGD--GSSNCLNS 445 (571)
T ss_pred -----ECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeE-----EEEECCEEEEEcCcC--CCccccce
Confidence 1223333332 558999999999999999 8887655444 799999999999865 11124479
Q ss_pred EEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEE
Q 016751 239 IVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWP 317 (383)
Q Consensus 239 il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 317 (383)
+.+||+.+++|..+ +++ ..+ ....+++.+|+||++++.++. ...-.+=..+ ...++|+.+..|.... ...
T Consensus 446 ve~YDP~t~~W~~~~~M~-~~R---~~~g~a~~~~~iYvvGG~~~~-~~~~~VE~yd--p~~~~W~~v~~m~~~r--s~~ 516 (571)
T KOG4441|consen 446 VECYDPETNTWTLIAPMN-TRR---SGFGVAVLNGKIYVVGGFDGT-SALSSVERYD--PETNQWTMVAPMTSPR--SAV 516 (571)
T ss_pred EEEEcCCCCceeecCCcc-ccc---ccceEEEECCEEEEECCccCC-CccceEEEEc--CCCCceeEcccCcccc--ccc
Confidence 99999999999988 676 555 456799999999999987751 1111222222 2457899997777654 222
Q ss_pred EEEeeCCcEEEEEEeeCCce----EEEEEeCCCCeEEEEE
Q 016751 318 LGFTERGKIFIRGECRHGGY----GLLVYNPHSDTFKCIG 353 (383)
Q Consensus 318 ~~~~~~g~i~~~~~~~~~~~----~~~~yd~~t~~~~~v~ 353 (383)
-....++.+|++ .+.++. ++.+||++|++|+...
T Consensus 517 g~~~~~~~ly~v--GG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 517 GVVVLGGKLYAV--GGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred cEEEECCEEEEE--ecccCccccceeEEcCCCCCceeeCC
Confidence 233456789998 432222 7999999999999873
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.66 E-value=1.8e-14 Score=142.91 Aligned_cols=241 Identities=13% Similarity=0.104 Sum_probs=156.9
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCC----CCceEEEEccCccceeecCCCCCCCCceeEEEec
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNS 164 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~----~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~ 164 (383)
..|++....|..+.....+ . .....+..+|.|.+.++.. ....++.+||.+++|..+|+++..+...+.+.-
T Consensus 275 ~~yd~~~~~W~~l~~mp~~--r-~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~- 350 (557)
T PHA02713 275 LVYNINTMEYSVISTIPNH--I-INYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI- 350 (557)
T ss_pred EEEeCCCCeEEECCCCCcc--c-cceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-
Confidence 3577777777766532222 1 1223455677776665421 134688999999999999999877644222211
Q ss_pred cCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCC-------
Q 016751 165 VSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYH------- 231 (383)
Q Consensus 165 ~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~------- 231 (383)
.+ +|..++. ...+|+|++.+++|+.++ ++|.++.... ++.++|.+|.+++.....
T Consensus 351 ----~g--~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~-----~~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 351 ----DD--TIYAIGGQNGTNVERTIECYTMGDDKWKMLP-DMPIALSSYG-----MCVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred ----CC--EEEEECCcCCCCCCceEEEEECCCCeEEECC-CCCccccccc-----EEEECCEEEEEeCCCcccccccccc
Confidence 11 2333321 347999999999999999 8887775443 788999999998754100
Q ss_pred --------CCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCC-CC
Q 016751 232 --------DNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLT-ES 301 (383)
Q Consensus 232 --------~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~-~~ 301 (383)
+......+.+||+.+++|+.+ ++| ..+ ....+++.+|+||++++..+.....-.+...+- .. ++
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp--~~~~~ 492 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT--NTYNG 492 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCC-ccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecC--CCCCC
Confidence 001135799999999999988 666 444 345688999999999876531111111223332 33 58
Q ss_pred eEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc-eEEEEEeCCCCeEEEEEEe
Q 016751 302 WTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG-YGLLVYNPHSDTFKCIGVH 355 (383)
Q Consensus 302 W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~yd~~t~~~~~v~~~ 355 (383)
|+.+..|+.+. ...-.+.-+|.||+. ++.++ ..+.+||++|++|..+.-+
T Consensus 493 W~~~~~m~~~r--~~~~~~~~~~~iyv~--Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 493 WELITTTESRL--SALHTILHDNTIMML--HCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred eeEccccCccc--ccceeEEECCEEEEE--eeecceeehhhcCcccccccchhhh
Confidence 99999888764 222233346899999 43222 2589999999999998665
No 4
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.63 E-value=3e-14 Score=119.04 Aligned_cols=147 Identities=31% Similarity=0.527 Sum_probs=102.2
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCC-CCCceEEEEe-CCeEEEEEecCCCCccEEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLST-DDADKYLNVF-DGYLCVFATIPNNTFRSYEL 290 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~-~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~i 290 (383)
+|++||.+||++... . ......|++||+.+|+| ..+++| .... ......|++. +|+||++..... ...++|
T Consensus 1 gV~vnG~~hW~~~~~--~-~~~~~~IlsFDl~~E~F~~~~~lP-~~~~~~~~~~~L~~v~~~~L~~~~~~~~--~~~~~I 74 (164)
T PF07734_consen 1 GVFVNGALHWLAYDE--N-NDEKDFILSFDLSTEKFGRSLPLP-FCNDDDDDSVSLSVVRGDCLCVLYQCDE--TSKIEI 74 (164)
T ss_pred CEEECCEEEeeEEec--C-CCCceEEEEEeccccccCCEECCC-CccCccCCEEEEEEecCCEEEEEEeccC--CccEEE
Confidence 589999999999876 1 11112899999999999 888999 5554 2345667554 679999975443 146999
Q ss_pred EEeccCC-CCCCeEEEEEecCCCc---ee----EEEEEeeCCcEEEEEEeeCCc-----eEEEEEeCCCCeEEEEEEecC
Q 016751 291 WVMKEYG-LTESWTKLYTIEKPQR---IW----WPLGFTERGKIFIRGECRHGG-----YGLLVYNPHSDTFKCIGVHLP 357 (383)
Q Consensus 291 W~l~~~~-~~~~W~~~~~i~~~~~---~~----~~~~~~~~g~i~~~~~~~~~~-----~~~~~yd~~t~~~~~v~~~~~ 357 (383)
|++++++ ++.+|+|..+|+.... .. ..+.+..++++++. ..... ..++.|+ +++..+++++...
T Consensus 75 Wvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~--~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~ 151 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVC--CDKETQREEKNKIYIVG-EDGKFIEVDIEDK 151 (164)
T ss_pred EEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEE--EcCCCCccceeEEEEEc-CCCEEEEcccccC
Confidence 9999764 3789999999986543 11 12333445566666 42111 2588888 7788888877533
Q ss_pred -cceeEEeeeecc
Q 016751 358 -YYAIQVLNFVES 369 (383)
Q Consensus 358 -~~~~~~~~y~~s 369 (383)
..+..++.|+||
T Consensus 152 ~~~~~~~~~YvpS 164 (164)
T PF07734_consen 152 SSCWPSICNYVPS 164 (164)
T ss_pred CCCCCCEEEECCC
Confidence 356778899997
No 5
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.54 E-value=2.4e-13 Score=108.85 Aligned_cols=110 Identities=25% Similarity=0.462 Sum_probs=83.6
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC-CCCCceEEEEeCCeEEEEEecCCCCccEEEEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNNTFRSYELWV 292 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~ 292 (383)
|+++||.+||++... ......|++||+.+|+|+.+++| ... .......|.+++|+|+++..........++||+
T Consensus 1 gicinGvly~~a~~~----~~~~~~IvsFDv~~E~f~~i~~P-~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWv 75 (129)
T PF08268_consen 1 GICINGVLYWLAWSE----DSDNNVIVSFDVRSEKFRFIKLP-EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWV 75 (129)
T ss_pred CEEECcEEEeEEEEC----CCCCcEEEEEEcCCceEEEEEee-eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEE
Confidence 589999999999873 34567999999999999999987 322 223677899999999999877652234699999
Q ss_pred eccCCCCCCeEEEEEe-cCCCc------eeEEEEEeeCCcEEEE
Q 016751 293 MKEYGLTESWTKLYTI-EKPQR------IWWPLGFTERGKIFIR 329 (383)
Q Consensus 293 l~~~~~~~~W~~~~~i-~~~~~------~~~~~~~~~~g~i~~~ 329 (383)
|++++ +.+|++.+.+ +.... ...+.++..+|+|++.
T Consensus 76 LeD~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 76 LEDYE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred eeccc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 99876 4789988653 33211 4567777778887776
No 6
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.53 E-value=7.6e-12 Score=115.26 Aligned_cols=295 Identities=15% Similarity=0.170 Sum_probs=157.4
Q ss_pred cCCCCCCHHHHHHHHhcCC-hhhhHHhhccchhhHhhcCChHHHHHHHhcCCCCCCcEEEeec-CCCCceeecccCCCcc
Q 016751 21 CSSFRLPEDVMIDIFLRLE-VKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG-ISPSYLGFYSTKCKEF 98 (383)
Q Consensus 21 ~~~~~Lp~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 98 (383)
..|++||+|||..|..||| ..+++|+|+|||+||+.+.... +. ......|+ ++.... +... +.++.. ..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~-~~~~~~~~~~~---~~~~~~-~~ 72 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPL-ILFNPINPSET---LTDDRS-YI 72 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCcccccc-cccCcccCCCC---cccccc-cc
Confidence 4689999999999999998 5799999999999999887421 00 00001111 111110 0000 000000 00
Q ss_pred cccCCCCCCCCCCCeeE---EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCC---------CceeE-EEecc
Q 016751 99 EDLCDPPFRTQLADLDV---VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP---------RYLGF-GVNSV 165 (383)
Q Consensus 99 ~~l~~p~~~~~~~~~~~---~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~---------~~~~~-g~d~~ 165 (383)
......... ...+.+ .++..|+|.-.......+.+.+.||.++....+|+....- ..+.+ +.+..
T Consensus 73 ~~~~~~ls~--~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~ 150 (373)
T PLN03215 73 SRPGAFLSR--AAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKR 150 (373)
T ss_pred ccccceeee--eEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccc
Confidence 000000000 000111 1356788876542124578899999999987777532221 00222 11100
Q ss_pred ---------------C-CCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeecc
Q 016751 166 ---------------S-GHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSC 229 (383)
Q Consensus 166 ---------------~-~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~ 229 (383)
+ +...+|-|+++.....+.... .++|..++ ....... . -++.+|.+|.+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~--~~~Wt~l~-~~~~~~~--D-----Ii~~kGkfYAvD~~G- 219 (373)
T PLN03215 151 RETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWD--GNVLKALK-QMGYHFS--D-----IIVHKGQTYALDSIG- 219 (373)
T ss_pred cccccceeEEEEEEeecCCCcceEEEEEeecCcEeeec--CCeeeEcc-CCCceee--E-----EEEECCEEEEEcCCC-
Confidence 0 001123344444322222232 48899887 4333322 2 799999999986544
Q ss_pred CCCCCCCcEEEEEECCCCeeeEeCCCCC-----CCCCCCceEEEEeCCeEEEEEecCCC-------------CccEEEEE
Q 016751 230 YHDNSCPWLIVSFDFAKEIFQTVMMPYD-----LSTDDADKYLNVFDGYLCVFATIPNN-------------TFRSYELW 291 (383)
Q Consensus 230 ~~~~~~~~~il~fD~~~~~~~~i~lP~~-----~~~~~~~~~l~~~~g~L~~v~~~~~~-------------~~~~l~iW 291 (383)
.+.++|..-+ .+.+..+.. ... .....|+++.|+|++|...... ....++|+
T Consensus 220 --------~l~~i~~~l~-i~~v~~~i~~~~~~g~~-~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vf 289 (373)
T PLN03215 220 --------IVYWINSDLE-FSRFGTSLDENITDGCW-TGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVY 289 (373)
T ss_pred --------eEEEEecCCc-eeeecceecccccCCcc-cCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEE
Confidence 6777774322 222211101 111 1346799999999999874211 12457888
Q ss_pred EeccCCCCCCeEEEEEecCCCcee---EEEEE-------eeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEE
Q 016751 292 VMKEYGLTESWTKLYTIEKPQRIW---WPLGF-------TERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV 354 (383)
Q Consensus 292 ~l~~~~~~~~W~~~~~i~~~~~~~---~~~~~-------~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~~ 354 (383)
+++.. ..+|+++.+++-..++. ..+++ ...+-||+. . +.. ..+||++.++...+..
T Consensus 290 klD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt--d--d~~-~~v~~~~dg~~~~~~~ 355 (373)
T PLN03215 290 KFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT--E--DTM-PKVFKLDNGNGSSIET 355 (373)
T ss_pred EEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE--C--CCc-ceEEECCCCCccceEe
Confidence 88753 46899999887654311 11111 123468887 4 443 7899999999776643
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.52 E-value=8.4e-13 Score=130.75 Aligned_cols=195 Identities=17% Similarity=0.256 Sum_probs=140.9
Q ss_pred ceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-------cCeEEEEEcCCCceeeeccCCCceee
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-------NADAEVYSLRSNSWKNIAYGFPRSIE 205 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-------~~~~~vyss~t~~W~~~~~~~p~~~~ 205 (383)
..+..+||.+++|..+.+++..+...+.+.- .+ +|..++. ...+++|++.+++|..++ +|...+.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-----~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a-~M~~~R~ 372 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-----NG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA-PMNTKRS 372 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-----CC--EEEEEccccCCCcccceEEEecCCCCceeccC-CccCccc
Confidence 4577899999999999999977644332221 11 2222211 468999999999999998 8888877
Q ss_pred eccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCC
Q 016751 206 INRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNT 284 (383)
Q Consensus 206 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~ 284 (383)
... .+.++|.+|.+++.. +......+..||+.+++|+.+ +++ ..+ .....++.+|+||++++....
T Consensus 373 ~~~-----v~~l~g~iYavGG~d---g~~~l~svE~YDp~~~~W~~va~m~-~~r---~~~gv~~~~g~iYi~GG~~~~- 439 (571)
T KOG4441|consen 373 DFG-----VAVLDGKLYAVGGFD---GEKSLNSVECYDPVTNKWTPVAPML-TRR---SGHGVAVLGGKLYIIGGGDGS- 439 (571)
T ss_pred cce-----eEEECCEEEEEeccc---cccccccEEEecCCCCcccccCCCC-cce---eeeEEEEECCEEEEEcCcCCC-
Confidence 655 789999999999876 234456899999999999998 576 544 567889999999999997762
Q ss_pred ccEEEEEEeccCC-CCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC---ceEEEEEeCCCCeEEEEE
Q 016751 285 FRSYELWVMKEYG-LTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG---GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 285 ~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~---~~~~~~yd~~t~~~~~v~ 353 (383)
.-.+=.++.|+ ..+.|+....|+.... ...++ .-+|.||.+|-. ++ ...+..||++|++|..+.
T Consensus 440 --~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a-~~~~~iYvvGG~-~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 440 --SNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVA-VLNGKIYVVGGF-DGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred --ccccceEEEEcCCCCceeecCCcccccc-cceEE-EECCEEEEECCc-cCCCccceEEEEcCCCCceeEcc
Confidence 21332333332 4678999999988752 22233 346789999322 22 126899999999999984
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.50 E-value=8e-12 Score=124.53 Aligned_cols=212 Identities=14% Similarity=0.123 Sum_probs=138.4
Q ss_pred EccCceEEEeecCC----CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe------cCeEEEE
Q 016751 117 GSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV------NADAEVY 186 (383)
Q Consensus 117 ~s~~Gll~~~~~~~----~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~------~~~~~vy 186 (383)
+..++.|.+.++.. ....++.+||.+++|..+|+++..+...+...- .+ +++.++. ...+++|
T Consensus 291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-----~~--~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-----NN--RIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-----CC--EEEEEeCCCCCEecceEEEE
Confidence 34455554444321 123689999999999999998866543222211 11 1222221 4578999
Q ss_pred EcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCce
Q 016751 187 SLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADK 265 (383)
Q Consensus 187 ss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~ 265 (383)
+..+++|+..+ ++|.++..+. ++.++|.+|.+++.. .+......+..||+.+++|+.+ ++| ..+ ...
T Consensus 364 d~~~~~W~~~~-~lp~~r~~~~-----~~~~~~~iYv~GG~~--~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r---~~~ 431 (534)
T PHA03098 364 KPGESKWREEP-PLIFPRYNPC-----VVNVNNLIYVIGGIS--KNDELLKTVECFSLNTNKWSKGSPLP-ISH---YGG 431 (534)
T ss_pred cCCCCceeeCC-CcCcCCccce-----EEEECCEEEEECCcC--CCCcccceEEEEeCCCCeeeecCCCC-ccc---cCc
Confidence 99999999988 8887664333 688999999998853 1122346899999999999988 666 444 344
Q ss_pred EEEEeCCeEEEEEecCCCCc--cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC----ceEE
Q 016751 266 YLNVFDGYLCVFATIPNNTF--RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG----GYGL 339 (383)
Q Consensus 266 ~l~~~~g~L~~v~~~~~~~~--~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~ 339 (383)
..+..+|+|+++++...... ..-.+|..+- .+++|.++..++.+. .....+..+|.||+. ++.. ...+
T Consensus 432 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~v 505 (534)
T PHA03098 432 CAIYHDGKIYVIGGISYIDNIKVYNIVESYNP--VTNKWTELSSLNFPR--INASLCIFNNKIYVV--GGDKYEYYINEI 505 (534)
T ss_pred eEEEECCEEEEECCccCCCCCcccceEEEecC--CCCceeeCCCCCccc--ccceEEEECCEEEEE--cCCcCCccccee
Confidence 56778999999987643110 1123666654 347899987666543 222222336788888 4211 1269
Q ss_pred EEEeCCCCeEEEEE
Q 016751 340 LVYNPHSDTFKCIG 353 (383)
Q Consensus 340 ~~yd~~t~~~~~v~ 353 (383)
.+||+++++|+.+.
T Consensus 506 ~~yd~~~~~W~~~~ 519 (534)
T PHA03098 506 EVYDDKTNTWTLFC 519 (534)
T ss_pred EEEeCCCCEEEecC
Confidence 99999999999873
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.48 E-value=3.6e-12 Score=126.63 Aligned_cols=194 Identities=10% Similarity=0.140 Sum_probs=131.8
Q ss_pred eEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-------cCeEEEEEcCCCceeeeccCCCceeee
Q 016751 134 LIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-------NADAEVYSLRSNSWKNIAYGFPRSIEI 206 (383)
Q Consensus 134 ~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-------~~~~~vyss~t~~W~~~~~~~p~~~~~ 206 (383)
.+..+||.+++|..+++++..+...+.+. . .+ +|+.++. ...++.|++.++.|..++ ++|.++..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~--l---~~--~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~-~m~~~R~~ 344 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI--V---DN--EIIIAGGYNFNNPSLNKVYKINIENKIHVELP-PMIKNRCR 344 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE--E---CC--EEEEEcCCCCCCCccceEEEEECCCCeEeeCC-CCcchhhc
Confidence 56789999999999999887653322211 1 11 2222221 357899999999999999 88877654
Q ss_pred ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCc
Q 016751 207 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF 285 (383)
Q Consensus 207 ~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~ 285 (383)
.. .+.++|++|.+++.. +......+.+||+.+++|+.+ ++| ..+ .....++++|+||++++......
T Consensus 345 ~~-----~~~~~g~IYviGG~~---~~~~~~sve~Ydp~~~~W~~~~~mp-~~r---~~~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 345 FS-----LAVIDDTIYAIGGQN---GTNVERTIECYTMGDDKWKMLPDMP-IAL---SSYGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred ee-----EEEECCEEEEECCcC---CCCCCceEEEEECCCCeEEECCCCC-ccc---ccccEEEECCEEEEEeCCCcccc
Confidence 43 789999999999864 122345799999999999988 667 554 34567789999999987643100
Q ss_pred -----------------cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc-----eEEEEEe
Q 016751 286 -----------------RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG-----YGLLVYN 343 (383)
Q Consensus 286 -----------------~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~-----~~~~~yd 343 (383)
..-.+...+- ..++|+.+..|+... .....+.-+|.||+. ++..+ ..+.+||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~--GG~~~~~~~~~~ve~Yd 486 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGT--IRPGVVSHKDDIYVV--CDIKDEKNVKTCIFRYN 486 (557)
T ss_pred cccccccccccccccccccceEEEECC--CCCeEeecCCCCccc--ccCcEEEECCEEEEE--eCCCCCCccceeEEEec
Confidence 0112333332 357899988887654 233334456899998 42111 1478999
Q ss_pred CCC-CeEEEEE
Q 016751 344 PHS-DTFKCIG 353 (383)
Q Consensus 344 ~~t-~~~~~v~ 353 (383)
+++ ++|+.+.
T Consensus 487 p~~~~~W~~~~ 497 (557)
T PHA02713 487 TNTYNGWELIT 497 (557)
T ss_pred CCCCCCeeEcc
Confidence 999 8999873
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.48 E-value=6.5e-12 Score=122.90 Aligned_cols=197 Identities=12% Similarity=0.044 Sum_probs=133.9
Q ss_pred cCceEEEeecCC---CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe---cCeEEEEEcCCCc
Q 016751 119 CNGVLCFCSNGS---DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV---NADAEVYSLRSNS 192 (383)
Q Consensus 119 ~~Gll~~~~~~~---~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~---~~~~~vyss~t~~ 192 (383)
.++.|.+.++.. .......+||.+++|..+|+++..+...+... . .+ ++..++. ...++.|+..+++
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~---~~--~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A---NN--KLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E---CC--EEEEECCcCCCCceEEEECCCCe
Confidence 455655544311 22357789999999999999987664422221 1 22 2333322 3578999999999
Q ss_pred eeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeC
Q 016751 193 WKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFD 271 (383)
Q Consensus 193 W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~ 271 (383)
|..++ ++|.++..+. ++.++|.+|.+++.. .....+.+||+.+++|+.+ ++| ..+ .....++.+
T Consensus 343 W~~~~-~l~~~r~~~~-----~~~~~g~IYviGG~~-----~~~~~ve~ydp~~~~W~~~~~m~-~~r---~~~~~~~~~ 407 (480)
T PHA02790 343 WVNMP-SLLKPRCNPA-----VASINNVIYVIGGHS-----ETDTTTEYLLPNHDQWQFGPSTY-YPH---YKSCALVFG 407 (480)
T ss_pred EEECC-CCCCCCcccE-----EEEECCEEEEecCcC-----CCCccEEEEeCCCCEEEeCCCCC-Ccc---ccceEEEEC
Confidence 99999 8887665433 789999999998864 1235688999999999987 555 433 345677899
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC--c--eEEEEEeCCCC
Q 016751 272 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG--G--YGLLVYNPHSD 347 (383)
Q Consensus 272 g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~--~--~~~~~yd~~t~ 347 (383)
|+|+++++. .++.-. ..++|+.+..++.+. ...-++.-+|+||+. ++.+ . ..+.+||++++
T Consensus 408 ~~IYv~GG~-------~e~ydp----~~~~W~~~~~m~~~r--~~~~~~v~~~~IYvi--GG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 408 RRLFLVGRN-------AEFYCE----SSNTWTLIDDPIYPR--DNPELIIVDNKLLLI--GGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CEEEEECCc-------eEEecC----CCCcEeEcCCCCCCc--cccEEEEECCEEEEE--CCcCCCcccceEEEEECCCC
Confidence 999999742 222221 357899988877654 222333457899999 4211 1 25999999999
Q ss_pred eEEEE
Q 016751 348 TFKCI 352 (383)
Q Consensus 348 ~~~~v 352 (383)
+|+..
T Consensus 473 ~W~~~ 477 (480)
T PHA02790 473 SWNIW 477 (480)
T ss_pred eEEec
Confidence 99754
No 11
>PLN02153 epithiospecifier protein
Probab=99.34 E-value=6.9e-10 Score=104.20 Aligned_cols=219 Identities=13% Similarity=0.114 Sum_probs=130.5
Q ss_pred EEccCceEEEeecCC-----CCceEEEEccCccceeecCCCCCCCC--ceeEEEeccCCCCCCeEEEEEEe------cCe
Q 016751 116 VGSCNGVLCFCSNGS-----DRSLIYLWNPLIKKYMTLPRPSLNPR--YLGFGVNSVSGHLDDFKVVTISV------NAD 182 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~-----~~~~~~v~NP~t~~~~~LP~~~~~~~--~~~~g~d~~~~~~~~ykVv~~~~------~~~ 182 (383)
.+..++.|.+..+.. ....++++||.+++|..+|++...+. ..++..... .+ +++.+.. ...
T Consensus 28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~--~iyv~GG~~~~~~~~~ 102 (341)
T PLN02153 28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GT--KLYIFGGRDEKREFSD 102 (341)
T ss_pred EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CC--EEEEECCCCCCCccCc
Confidence 344566666654321 12478999999999999987543221 112211111 11 2333221 347
Q ss_pred EEEEEcCCCceeeeccCC-----CceeeeccCcccceeEECceEEEEEeeccCCCC-----CCCcEEEEEECCCCeeeEe
Q 016751 183 AEVYSLRSNSWKNIAYGF-----PRSIEINRSHINSSVFLNGSVHWCARFSCYHDN-----SCPWLIVSFDFAKEIFQTV 252 (383)
Q Consensus 183 ~~vyss~t~~W~~~~~~~-----p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~-----~~~~~il~fD~~~~~~~~i 252 (383)
+++|+..+++|+.++ .+ |.++..+. ++..+|++|.+++.. ... .....+.+||+.+++|..+
T Consensus 103 v~~yd~~t~~W~~~~-~~~~~~~p~~R~~~~-----~~~~~~~iyv~GG~~--~~~~~~~~~~~~~v~~yd~~~~~W~~l 174 (341)
T PLN02153 103 FYSYDTVKNEWTFLT-KLDEEGGPEARTFHS-----MASDENHVYVFGGVS--KGGLMKTPERFRTIEAYNIADGKWVQL 174 (341)
T ss_pred EEEEECCCCEEEEec-cCCCCCCCCCceeeE-----EEEECCEEEEECCcc--CCCccCCCcccceEEEEECCCCeEeeC
Confidence 899999999999887 55 44443332 688999999998864 111 0124689999999999987
Q ss_pred CCCCC-CCCCCCceEEEEeCCeEEEEEecCCC----C---ccEEEEEEeccCCCCCCeEEEEEe---cCCCceeEEEEEe
Q 016751 253 MMPYD-LSTDDADKYLNVFDGYLCVFATIPNN----T---FRSYELWVMKEYGLTESWTKLYTI---EKPQRIWWPLGFT 321 (383)
Q Consensus 253 ~lP~~-~~~~~~~~~l~~~~g~L~~v~~~~~~----~---~~~l~iW~l~~~~~~~~W~~~~~i---~~~~~~~~~~~~~ 321 (383)
+.+ . .........++..+|+|+++++.... + ...-.++.++- ...+|+++... |... ....++.
T Consensus 175 ~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~r--~~~~~~~ 249 (341)
T PLN02153 175 PDP-GENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSAR--SVFAHAV 249 (341)
T ss_pred CCC-CCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCCCc--ceeeeEE
Confidence 432 1 11112344577889999999764310 0 01124565553 24779997643 3322 2222233
Q ss_pred eCCcEEEEEEeeCC-------------ceEEEEEeCCCCeEEEEEE
Q 016751 322 ERGKIFIRGECRHG-------------GYGLLVYNPHSDTFKCIGV 354 (383)
Q Consensus 322 ~~g~i~~~~~~~~~-------------~~~~~~yd~~t~~~~~v~~ 354 (383)
.++.||+. .+.. ...+++||+++++|+.+..
T Consensus 250 ~~~~iyv~--GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 250 VGKYIIIF--GGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred ECCEEEEE--CcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 45788888 3210 0158999999999998853
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.28 E-value=1.6e-09 Score=102.09 Aligned_cols=220 Identities=14% Similarity=0.099 Sum_probs=132.9
Q ss_pred EEccCceEEEeecCCCCceEEEEcc--CccceeecCCCCC-CCCceeEEEeccCCCCCCeEEEEEEe------------c
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNP--LIKKYMTLPRPSL-NPRYLGFGVNSVSGHLDDFKVVTISV------------N 180 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP--~t~~~~~LP~~~~-~~~~~~~g~d~~~~~~~~ykVv~~~~------------~ 180 (383)
.+..++-|.+..+. ....++++|+ .+++|..+|+++. .+...+...- .+ +|..+.. .
T Consensus 13 ~~~~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~-----~~--~iYv~GG~~~~~~~~~~~~~ 84 (346)
T TIGR03547 13 GAIIGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI-----DG--KLYVFGGIGKANSEGSPQVF 84 (346)
T ss_pred EEEECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcccceEEEE-----CC--EEEEEeCCCCCCCCCcceec
Confidence 34556666665432 2356788875 6789999999874 3332222110 11 1222211 2
Q ss_pred CeEEEEEcCCCceeeeccCCCceeeeccCccccee-EECceEEEEEeeccCC-----------CC---------------
Q 016751 181 ADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSV-FLNGSVHWCARFSCYH-----------DN--------------- 233 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v-~~~G~lYw~~~~~~~~-----------~~--------------- 233 (383)
..++.|+..+++|+.++..+|.....+. ++ .++|+||.+++..... +.
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~-----~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGAS-----GFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ 159 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCccccee-----EEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCC
Confidence 4789999999999998722333322111 33 6899999998753100 00
Q ss_pred -----CCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEE
Q 016751 234 -----SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYT 307 (383)
Q Consensus 234 -----~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~ 307 (383)
.....+.+||+.+++|+.+ ++| .... ....++..+|+|+++++.........++|..+-...++.|.++..
T Consensus 160 ~~~~~~~~~~v~~YDp~t~~W~~~~~~p-~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 160 PPEDYFWNKNVLSYDPSTNQWRNLGENP-FLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred ChhHcCccceEEEEECCCCceeECccCC-CCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 0025799999999999998 566 3211 345677889999999986532223345666553223468999888
Q ss_pred ecCCCc-----eeEEEEEeeCCcEEEEEEeeCC------------------c---eEEEEEeCCCCeEEEEE
Q 016751 308 IEKPQR-----IWWPLGFTERGKIFIRGECRHG------------------G---YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 308 i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~------------------~---~~~~~yd~~t~~~~~v~ 353 (383)
|+.+.. .....++..+|+||+. .+.. . ..+.+||+++++|+.+.
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~--GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVA--GGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEe--ecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 865421 0111233457889988 3211 0 14789999999998873
No 13
>PLN02193 nitrile-specifier protein
Probab=99.28 E-value=2.2e-09 Score=104.87 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=125.0
Q ss_pred ceEEEEccCccceeecCCCCCCC---C-ceeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCC--
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLNP---R-YLGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGF-- 200 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~~---~-~~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~-- 200 (383)
..++++||.+++|..+|+....+ + ....... .+ +++.+.. ...+++|++.+++|+.+. .+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-----~~--~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~-~~~~ 264 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-----GS--TLYVFGGRDASRQYNGFYSFDTTTNEWKLLT-PVEE 264 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-----CC--EEEEECCCCCCCCCccEEEEECCCCEEEEcC-cCCC
Confidence 35899999999999887542111 1 1111110 11 1222211 357899999999999987 55
Q ss_pred -CceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC-CCCCceEEEEeCCeEEEEE
Q 016751 201 -PRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFA 278 (383)
Q Consensus 201 -p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~~g~L~~v~ 278 (383)
|.++..+. .+..++.+|.+++.. .......+.+||+.+++|+.++.| ... ..+....+++.+|+|++++
T Consensus 265 ~P~~R~~h~-----~~~~~~~iYv~GG~~---~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~R~~~~~~~~~gkiyviG 335 (470)
T PLN02193 265 GPTPRSFHS-----MAADEENVYVFGGVS---ATARLKTLDSYNIVDKKWFHCSTP-GDSFSIRGGAGLEVVQGKVWVVY 335 (470)
T ss_pred CCCCccceE-----EEEECCEEEEECCCC---CCCCcceEEEEECCCCEEEeCCCC-CCCCCCCCCcEEEEECCcEEEEE
Confidence 44444332 677899999998764 112235789999999999988654 221 1124456778899999998
Q ss_pred ecCCCCccEEEEEEeccCCCCCCeEEEEEe---cCCCceeEEEEEeeCCcEEEEEEeeCC----------c---eEEEEE
Q 016751 279 TIPNNTFRSYELWVMKEYGLTESWTKLYTI---EKPQRIWWPLGFTERGKIFIRGECRHG----------G---YGLLVY 342 (383)
Q Consensus 279 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i---~~~~~~~~~~~~~~~g~i~~~~~~~~~----------~---~~~~~y 342 (383)
+..+. ..-++|+++-. +++|+++..+ |... ....++..+++||+. .+.. . ..+++|
T Consensus 336 G~~g~--~~~dv~~yD~~--t~~W~~~~~~g~~P~~R--~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 336 GFNGC--EVDDVHYYDPV--QDKWTQVETFGVRPSER--SVFASAAVGKHIVIF--GGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred CCCCC--ccCceEEEECC--CCEEEEeccCCCCCCCc--ceeEEEEECCEEEEE--CCccCCccccccCccceeccEEEE
Confidence 76531 23467777652 4679998665 3322 222233446788888 3210 0 148999
Q ss_pred eCCCCeEEEEEE
Q 016751 343 NPHSDTFKCIGV 354 (383)
Q Consensus 343 d~~t~~~~~v~~ 354 (383)
|+.|++|+.+..
T Consensus 408 D~~t~~W~~~~~ 419 (470)
T PLN02193 408 DTETLQWERLDK 419 (470)
T ss_pred EcCcCEEEEccc
Confidence 999999998853
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.26 E-value=2.8e-09 Score=99.31 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=123.2
Q ss_pred eEEEE-ccCcc-ceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCCCce----eeeccCC
Q 016751 134 LIYLW-NPLIK-KYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRSNSW----KNIAYGF 200 (383)
Q Consensus 134 ~~~v~-NP~t~-~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W----~~~~~~~ 200 (383)
.++++ +|..+ +|..+++++..+.+ .+..++ + +++.+.. ...++.|+..++.| +.++ ++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~------~--~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~l 110 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE------N--GIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NL 110 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEEC------C--EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CC
Confidence 46666 45433 79999888776543 222221 1 2322221 35789999999988 5666 77
Q ss_pred CceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEe
Q 016751 201 PRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFAT 279 (383)
Q Consensus 201 p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~ 279 (383)
|.++..+. ++.++|++|.+++.. +......+.+||+.+++|+.+ ++| ... ......++.+|+|+++++
T Consensus 111 p~~~~~~~-----~~~~~~~iYv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~~p-~~~--r~~~~~~~~~~~iYv~GG 179 (323)
T TIGR03548 111 PFTFENGS-----ACYKDGTLYVGGGNR---NGKPSNKSYLFNLETQEWFELPDFP-GEP--RVQPVCVKLQNELYVFGG 179 (323)
T ss_pred CcCccCce-----EEEECCEEEEEeCcC---CCccCceEEEEcCCCCCeeECCCCC-CCC--CCcceEEEECCEEEEEcC
Confidence 76654332 788999999998753 122346899999999999998 466 322 134556788999999998
Q ss_pred cCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc---e-eEEEEEeeCCcEEEEEEeeCC--------------------
Q 016751 280 IPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR---I-WWPLGFTERGKIFIRGECRHG-------------------- 335 (383)
Q Consensus 280 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---~-~~~~~~~~~g~i~~~~~~~~~-------------------- 335 (383)
.... ...+++..+- .+++|+++..++.... . ........++.||+. .+.+
T Consensus 180 ~~~~--~~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~~~~~~~~~ 253 (323)
T TIGR03548 180 GSNI--AYTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI--GGFNKDVYNDAVIDLATMKDESLK 253 (323)
T ss_pred CCCc--cccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE--CCcCHHHHHHHHhhhhhccchhhh
Confidence 6531 2345666654 2468998766532111 1 111122345788888 3211
Q ss_pred ----------------ceEEEEEeCCCCeEEEEE
Q 016751 336 ----------------GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 336 ----------------~~~~~~yd~~t~~~~~v~ 353 (383)
...+.+||+++++|+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 254 GYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 025999999999999885
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.23 E-value=4.2e-09 Score=100.15 Aligned_cols=224 Identities=13% Similarity=0.100 Sum_probs=131.3
Q ss_pred EEccCceEEEeecCCCCceEEEEccC--ccceeecCCCCC-CCCceeEEEeccCCCCCCeEEEEEEe----------cCe
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPL--IKKYMTLPRPSL-NPRYLGFGVNSVSGHLDDFKVVTISV----------NAD 182 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~--t~~~~~LP~~~~-~~~~~~~g~d~~~~~~~~ykVv~~~~----------~~~ 182 (383)
.+..++-|.+..+. ....++++|+. +++|..+|+++. .+...+... . .+...|+.... ...
T Consensus 34 ~~~~~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~--~---~~~IYV~GG~~~~~~~~~~~~~~~ 107 (376)
T PRK14131 34 GAIDNNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF--I---DGKLYVFGGIGKTNSEGSPQVFDD 107 (376)
T ss_pred EEEECCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE--E---CCEEEEEcCCCCCCCCCceeEccc
Confidence 44567777665431 33457788775 578999998764 332211111 0 11111111100 247
Q ss_pred EEEEEcCCCceeeeccCCCceeeeccCcccceeE-ECceEEEEEeeccCC-CC---------------------------
Q 016751 183 AEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVF-LNGSVHWCARFSCYH-DN--------------------------- 233 (383)
Q Consensus 183 ~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~-~~G~lYw~~~~~~~~-~~--------------------------- 233 (383)
+++|+..+++|+.++...|.....+. ++. .+|.||.+++..... .+
T Consensus 108 v~~YD~~~n~W~~~~~~~p~~~~~~~-----~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~ 182 (376)
T PRK14131 108 VYKYDPKTNSWQKLDTRSPVGLAGHV-----AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKP 182 (376)
T ss_pred EEEEeCCCCEEEeCCCCCCCcccceE-----EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCCh
Confidence 89999999999998722233322111 344 799999998853100 00
Q ss_pred ---CCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 016751 234 ---SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 309 (383)
Q Consensus 234 ---~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 309 (383)
.....+.+||+.+++|+.+ ++|...+ ....++..+++|+++++....+....++|..+-+..+.+|.++..|+
T Consensus 183 ~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 183 EDYFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred hhcCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence 0125799999999999988 5662122 34567788999999998543223456677665333457899988886
Q ss_pred CCCc------eeEEEEEeeCCcEEEEEEeeC-C----------------c--eEEEEEeCCCCeEEEEE
Q 016751 310 KPQR------IWWPLGFTERGKIFIRGECRH-G----------------G--YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 310 ~~~~------~~~~~~~~~~g~i~~~~~~~~-~----------------~--~~~~~yd~~t~~~~~v~ 353 (383)
.... .....+...++.||+.|-... . . ..+.+||+++++|+.+.
T Consensus 260 ~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 260 PAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 5421 011112335678888831100 0 0 02568999999998773
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.21 E-value=5.9e-10 Score=111.14 Aligned_cols=193 Identities=10% Similarity=0.056 Sum_probs=127.5
Q ss_pred eEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-------cCeEEEEEcCCCceeeeccCCCceeee
Q 016751 134 LIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-------NADAEVYSLRSNSWKNIAYGFPRSIEI 206 (383)
Q Consensus 134 ~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-------~~~~~vyss~t~~W~~~~~~~p~~~~~ 206 (383)
.+.-+|+.+++|..+++.+....+.+... .+ +++.++. ...++.|+..+++|..++ .+|.++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~R~~ 335 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCFGSVVL------NN--VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-ELIYPRKN 335 (534)
T ss_pred eeeecchhhhhcccccCccccccceEEEE------CC--EEEEECCCcCCCCeeccEEEEeCCCCeeeECC-CCCccccc
Confidence 34557888999998877664322111111 11 1222221 247899999999999988 78766554
Q ss_pred ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCc
Q 016751 207 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF 285 (383)
Q Consensus 207 ~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~ 285 (383)
+. .+.++|.+|.+++.. +......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++...++.
T Consensus 336 ~~-----~~~~~~~lyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~lp-~~r---~~~~~~~~~~~iYv~GG~~~~~~ 403 (534)
T PHA03098 336 PG-----VTVFNNRIYVIGGIY---NSISLNTVESWKPGESKWREEPPLI-FPR---YNPCVVNVNNLIYVIGGISKNDE 403 (534)
T ss_pred ce-----EEEECCEEEEEeCCC---CCEecceEEEEcCCCCceeeCCCcC-cCC---ccceEEEECCEEEEECCcCCCCc
Confidence 33 788999999998864 122345789999999999988 667 544 44567888999999988543211
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC-------ceEEEEEeCCCCeEEEEE
Q 016751 286 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG-------GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~-------~~~~~~yd~~t~~~~~v~ 353 (383)
..-.++.++- .+++|.+...++... ....++..++.||+. ++.. ...+.+||+++++|+.+.
T Consensus 404 ~~~~v~~yd~--~t~~W~~~~~~p~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 404 LLKTVECFSL--NTNKWSKGSPLPISH--YGGCAIYHDGKIYVI--GGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred ccceEEEEeC--CCCeeeecCCCCccc--cCceEEEECCEEEEE--CCccCCCCCcccceEEEecCCCCceeeCC
Confidence 2234555553 246799987776543 222334456789888 3211 114899999999999874
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.21 E-value=9.3e-10 Score=107.81 Aligned_cols=180 Identities=9% Similarity=0.010 Sum_probs=119.5
Q ss_pred ecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeE-EEeccCCC
Q 016751 90 FYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGF-GVNSVSGH 168 (383)
Q Consensus 90 ~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~-g~d~~~~~ 168 (383)
.|++....|..++....+ ......++.+|.|.+.++.+....+..+||.+++|..+|+++..+...+. .++
T Consensus 291 ~Ydp~~~~W~~~~~m~~~---r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~----- 362 (480)
T PHA02790 291 AVNYISNNWIPIPPMNSP---RLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASIN----- 362 (480)
T ss_pred EEECCCCEEEECCCCCch---hhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEEC-----
Confidence 466666777766543222 12223456788887666432335678899999999999999876643222 221
Q ss_pred CCCeEEEEEEe----cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEEC
Q 016751 169 LDDFKVVTISV----NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDF 244 (383)
Q Consensus 169 ~~~ykVv~~~~----~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~ 244 (383)
+ +|..++. ...++.|++++++|+.++ +++.++..+. ++.++|.+|.+++ ...+||+
T Consensus 363 -g--~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~m~~~r~~~~-----~~~~~~~IYv~GG-----------~~e~ydp 422 (480)
T PHA02790 363 -N--VIYVIGGHSETDTTTEYLLPNHDQWQFGP-STYYPHYKSC-----ALVFGRRLFLVGR-----------NAEFYCE 422 (480)
T ss_pred -C--EEEEecCcCCCCccEEEEeCCCCEEEeCC-CCCCccccce-----EEEECCEEEEECC-----------ceEEecC
Confidence 1 2322221 357899999999999998 8887765443 6789999999874 3678999
Q ss_pred CCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEE
Q 016751 245 AKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTK 304 (383)
Q Consensus 245 ~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~ 304 (383)
.+++|+.+ ++| ..+ ....+++.+|+||++++..+.. ..-.+...+- .+++|+.
T Consensus 423 ~~~~W~~~~~m~-~~r---~~~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~--~~~~W~~ 476 (480)
T PHA02790 423 SSNTWTLIDDPI-YPR---DNPELIIVDNKLLLIGGFYRGS-YIDTIEVYNN--RTYSWNI 476 (480)
T ss_pred CCCcEeEcCCCC-CCc---cccEEEEECCEEEEECCcCCCc-ccceEEEEEC--CCCeEEe
Confidence 99999988 566 434 4567889999999999865321 1122333332 3467864
No 18
>PLN02153 epithiospecifier protein
Probab=99.07 E-value=6e-08 Score=91.12 Aligned_cols=203 Identities=12% Similarity=0.070 Sum_probs=117.3
Q ss_pred eecccCCCcccccCCCC-CCCCCCCeeEEEccCceEEEeecCC---CCceEEEEccCccceeecCCC-----CCCCCcee
Q 016751 89 GFYSTKCKEFEDLCDPP-FRTQLADLDVVGSCNGVLCFCSNGS---DRSLIYLWNPLIKKYMTLPRP-----SLNPRYLG 159 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~s~~Gll~~~~~~~---~~~~~~v~NP~t~~~~~LP~~-----~~~~~~~~ 159 (383)
..|+.....|..+.... .+.........++.+|.|.+..+.. ....++++||.+++|..++++ |..+...+
T Consensus 53 ~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~ 132 (341)
T PLN02153 53 YVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHS 132 (341)
T ss_pred EEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeE
Confidence 35666666777654321 1110111223455567765554321 234789999999999999875 32222211
Q ss_pred EEEeccCCCCCCeEEEEEEe----------cCeEEEEEcCCCceeeeccCCC---ceeeeccCcccceeEECceEEEEEe
Q 016751 160 FGVNSVSGHLDDFKVVTISV----------NADAEVYSLRSNSWKNIAYGFP---RSIEINRSHINSSVFLNGSVHWCAR 226 (383)
Q Consensus 160 ~g~d~~~~~~~~ykVv~~~~----------~~~~~vyss~t~~W~~~~~~~p---~~~~~~~~~~~~~v~~~G~lYw~~~ 226 (383)
.... .+...|+.... ...+++|+.++++|+.++ .+. ..+..+. .+.++|++|.+++
T Consensus 133 ~~~~-----~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~-~~~~~~~~r~~~~-----~~~~~~~iyv~GG 201 (341)
T PLN02153 133 MASD-----ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP-DPGENFEKRGGAG-----FAVVQGKIWVVYG 201 (341)
T ss_pred EEEE-----CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC-CCCCCCCCCCcce-----EEEECCeEEEEec
Confidence 1111 11111111110 136899999999999887 443 2221111 5789999999876
Q ss_pred eccC-----CCCCCCcEEEEEECCCCeeeEeC----CCCCCCCCCCceEEEEeCCeEEEEEecCCC--------CccEEE
Q 016751 227 FSCY-----HDNSCPWLIVSFDFAKEIFQTVM----MPYDLSTDDADKYLNVFDGYLCVFATIPNN--------TFRSYE 289 (383)
Q Consensus 227 ~~~~-----~~~~~~~~il~fD~~~~~~~~i~----lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~--------~~~~l~ 289 (383)
.... ........+.+||+.+.+|+.+. +| ..+ .....+..+++|+++++.... +....+
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~ 277 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP-SAR---SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNE 277 (341)
T ss_pred cccccccCCccceecCceEEEEcCCCcEEeccccCCCC-CCc---ceeeeEEECCEEEEECcccCCcccccccccccccc
Confidence 4210 00112357999999999999884 45 333 345567889999999885310 011237
Q ss_pred EEEeccCCCCCCeEEEEEe
Q 016751 290 LWVMKEYGLTESWTKLYTI 308 (383)
Q Consensus 290 iW~l~~~~~~~~W~~~~~i 308 (383)
+|.++-. +..|+++...
T Consensus 278 v~~~d~~--~~~W~~~~~~ 294 (341)
T PLN02153 278 GYALDTE--TLVWEKLGEC 294 (341)
T ss_pred EEEEEcC--ccEEEeccCC
Confidence 8888853 4689987643
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.05 E-value=9.8e-08 Score=90.83 Aligned_cols=161 Identities=13% Similarity=0.147 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCC--cEEEEEECCCCeeeEe-CCCCC
Q 016751 181 ADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCP--WLIVSFDFAKEIFQTV-MMPYD 257 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~--~~il~fD~~~~~~~~i-~lP~~ 257 (383)
..+++|+..+++|+.++ .+|........ .+.++|+||.+++.. ..+... .....||+.+.+|..+ .+| .
T Consensus 189 ~~v~~YD~~t~~W~~~~-~~p~~~~~~~a----~v~~~~~iYv~GG~~--~~~~~~~~~~~~~~~~~~~~W~~~~~~p-~ 260 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG-ESPFLGTAGSA----VVIKGNKLWLINGEI--KPGLRTDAVKQGKFTGNNLKWQKLPDLP-P 260 (376)
T ss_pred ceEEEEECCCCeeeECC-cCCCCCCCcce----EEEECCEEEEEeeeE--CCCcCChhheEEEecCCCcceeecCCCC-C
Confidence 46999999999999988 77753322222 678899999999864 111112 2345667889999987 666 4
Q ss_pred CCCCC-----CceEEEEeCCeEEEEEecCCCCc------cE-------EEEEEeccCC-CCCCeEEEEEecCCCceeEEE
Q 016751 258 LSTDD-----ADKYLNVFDGYLCVFATIPNNTF------RS-------YELWVMKEYG-LTESWTKLYTIEKPQRIWWPL 318 (383)
Q Consensus 258 ~~~~~-----~~~~l~~~~g~L~~v~~~~~~~~------~~-------l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~ 318 (383)
.+... .....++.+|+|+++++...... .. -.+|..+.++ ..+.|++...++... ....
T Consensus 261 ~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--~~~~ 338 (376)
T PRK14131 261 APGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--AYGV 338 (376)
T ss_pred CCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc--cceE
Confidence 33211 11224678999999987542110 00 0123322221 246799988877654 2223
Q ss_pred EEeeCCcEEEEEEeeCCc---eEEEEEeCCCCeEEE
Q 016751 319 GFTERGKIFIRGECRHGG---YGLLVYNPHSDTFKC 351 (383)
Q Consensus 319 ~~~~~g~i~~~~~~~~~~---~~~~~yd~~t~~~~~ 351 (383)
++.-++.||+.|-..... ..+..|+++++++..
T Consensus 339 av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 339 SVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 444567898883110111 168889988877654
No 20
>PLN02193 nitrile-specifier protein
Probab=98.99 E-value=6e-08 Score=94.87 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=117.1
Q ss_pred eEEEEccCc----cceeecCCC---CCCCCceeEEEeccCCCCCCeEEEEEEe--------cCeEEEEEcCCCceeeecc
Q 016751 134 LIYLWNPLI----KKYMTLPRP---SLNPRYLGFGVNSVSGHLDDFKVVTISV--------NADAEVYSLRSNSWKNIAY 198 (383)
Q Consensus 134 ~~~v~NP~t----~~~~~LP~~---~~~~~~~~~g~d~~~~~~~~ykVv~~~~--------~~~~~vyss~t~~W~~~~~ 198 (383)
..++++|.+ .+|..+++. |..+...+.... .+ +++.+.. ...+++|+.++++|+.++.
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~-----~~--~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~ 210 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQV-----GN--KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPA 210 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEE-----CC--EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCC
Confidence 467888877 789988763 333322111111 11 1222211 2468999999999997762
Q ss_pred --CCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CC---CCCCCCCCCceEEEEeCC
Q 016751 199 --GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MM---PYDLSTDDADKYLNVFDG 272 (383)
Q Consensus 199 --~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~l---P~~~~~~~~~~~l~~~~g 272 (383)
..|..... ... ++.+++.||.+++.. .......+.+||+.+++|+.+ ++ | ..+ ....++..++
T Consensus 211 ~g~~P~~~~~-~~~---~v~~~~~lYvfGG~~---~~~~~ndv~~yD~~t~~W~~l~~~~~~P-~~R---~~h~~~~~~~ 279 (470)
T PLN02193 211 TGDVPHLSCL-GVR---MVSIGSTLYVFGGRD---ASRQYNGFYSFDTTTNEWKLLTPVEEGP-TPR---SFHSMAADEE 279 (470)
T ss_pred CCCCCCCccc-ceE---EEEECCEEEEECCCC---CCCCCccEEEEECCCCEEEEcCcCCCCC-CCc---cceEEEEECC
Confidence 12221111 111 678999999998754 112235799999999999987 44 3 333 4456777899
Q ss_pred eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe---cCCCceeEEEEEeeCCcEEEEEEeeCCc---eEEEEEeCCC
Q 016751 273 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI---EKPQRIWWPLGFTERGKIFIRGECRHGG---YGLLVYNPHS 346 (383)
Q Consensus 273 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i---~~~~~~~~~~~~~~~g~i~~~~~~~~~~---~~~~~yd~~t 346 (383)
+|+++++.... ...-.++.++- .+.+|+.+... +... .....+..+++||+. .+..+ ..+++||+++
T Consensus 280 ~iYv~GG~~~~-~~~~~~~~yd~--~t~~W~~~~~~~~~~~~R--~~~~~~~~~gkiyvi--GG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 280 NVYVFGGVSAT-ARLKTLDSYNI--VDKKWFHCSTPGDSFSIR--GGAGLEVVQGKVWVV--YGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EEEEECCCCCC-CCcceEEEEEC--CCCEEEeCCCCCCCCCCC--CCcEEEEECCcEEEE--ECCCCCccCceEEEECCC
Confidence 99999876531 12234555553 24679875431 1111 112222346788887 42111 2599999999
Q ss_pred CeEEEEEE
Q 016751 347 DTFKCIGV 354 (383)
Q Consensus 347 ~~~~~v~~ 354 (383)
++|+.+..
T Consensus 353 ~~W~~~~~ 360 (470)
T PLN02193 353 DKWTQVET 360 (470)
T ss_pred CEEEEecc
Confidence 99999854
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.93 E-value=4.2e-07 Score=85.57 Aligned_cols=135 Identities=12% Similarity=0.162 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEE--ECCCCeeeEe-CCCCC
Q 016751 181 ADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSF--DFAKEIFQTV-MMPYD 257 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~f--D~~~~~~~~i-~lP~~ 257 (383)
..+++|+..+++|+.++ .+|........ .+.++|+||.+++.. ........+..| |+.+++|+.+ ++| .
T Consensus 168 ~~v~~YDp~t~~W~~~~-~~p~~~r~~~~----~~~~~~~iyv~GG~~--~~~~~~~~~~~y~~~~~~~~W~~~~~m~-~ 239 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG-ENPFLGTAGSA----IVHKGNKLLLINGEI--KPGLRTAEVKQYLFTGGKLEWNKLPPLP-P 239 (346)
T ss_pred ceEEEEECCCCceeECc-cCCCCcCCCce----EEEECCEEEEEeeee--CCCccchheEEEEecCCCceeeecCCCC-C
Confidence 57999999999999998 77753222221 678899999998864 111112334445 4577799887 666 3
Q ss_pred CCC---CC-CceEEEEeCCeEEEEEecCCCC------------------ccEEEEEEeccCCCCCCeEEEEEecCCCcee
Q 016751 258 LST---DD-ADKYLNVFDGYLCVFATIPNNT------------------FRSYELWVMKEYGLTESWTKLYTIEKPQRIW 315 (383)
Q Consensus 258 ~~~---~~-~~~~l~~~~g~L~~v~~~~~~~------------------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 315 (383)
.+. .. .....++.+|+|+++++..... ....+++..+ .++|+.+..++... .
T Consensus 240 ~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~----~~~W~~~~~lp~~~--~ 313 (346)
T TIGR03547 240 PKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD----NGKWSKVGKLPQGL--A 313 (346)
T ss_pred CCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec----CCcccccCCCCCCc--e
Confidence 321 00 1233667899999998764210 0134555544 36799998887653 2
Q ss_pred EEEEEeeCCcEEEE
Q 016751 316 WPLGFTERGKIFIR 329 (383)
Q Consensus 316 ~~~~~~~~g~i~~~ 329 (383)
...++..++.||+.
T Consensus 314 ~~~~~~~~~~iyv~ 327 (346)
T TIGR03547 314 YGVSVSWNNGVLLI 327 (346)
T ss_pred eeEEEEcCCEEEEE
Confidence 22334456788888
No 22
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.88 E-value=2.2e-09 Score=69.38 Aligned_cols=40 Identities=28% Similarity=0.741 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHH
Q 016751 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 62 (383)
Q Consensus 23 ~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F 62 (383)
+..||+|++.+||+.||++++.+++.|||+|+.++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 4689999999999999999999999999999999987743
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.81 E-value=2.2e-07 Score=86.67 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=101.0
Q ss_pred eEEEEEcCC--CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee----eEe-CC
Q 016751 182 DAEVYSLRS--NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF----QTV-MM 254 (383)
Q Consensus 182 ~~~vyss~t--~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~----~~i-~l 254 (383)
.+.+|+..+ .+|..+. ++|.++..+. ++.+++.+|.+++.. +......+..||+.+++| ..+ ++
T Consensus 40 ~v~~~~~~~~~~~W~~~~-~lp~~r~~~~-----~~~~~~~lyviGG~~---~~~~~~~v~~~d~~~~~w~~~~~~~~~l 110 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDG-QLPYEAAYGA-----SVSVENGIYYIGGSN---SSERFSSVYRITLDESKEELICETIGNL 110 (323)
T ss_pred eeEEEecCCCceeEEEcc-cCCccccceE-----EEEECCEEEEEcCCC---CCCCceeEEEEEEcCCceeeeeeEcCCC
Confidence 345554222 3799988 8887765433 688899999998754 122346899999999988 444 56
Q ss_pred CCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC
Q 016751 255 PYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH 334 (383)
Q Consensus 255 P~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~ 334 (383)
| ..+ .....++.+|+|+++++.... ...-.+|.++- .+++|+++..++... .....++..+++||+. .+.
T Consensus 111 p-~~~---~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~--~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~--GG~ 180 (323)
T TIGR03548 111 P-FTF---ENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNL--ETQEWFELPDFPGEP-RVQPVCVKLQNELYVF--GGG 180 (323)
T ss_pred C-cCc---cCceEEEECCEEEEEeCcCCC-ccCceEEEEcC--CCCCeeECCCCCCCC-CCcceEEEECCEEEEE--cCC
Confidence 6 444 345677889999999886431 12335677764 246799987776432 1233334456789998 422
Q ss_pred Cc---eEEEEEeCCCCeEEEEE
Q 016751 335 GG---YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 335 ~~---~~~~~yd~~t~~~~~v~ 353 (383)
+. ..+++||+++++|+.+.
T Consensus 181 ~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 181 SNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCccccceEEEecCCCeeEECC
Confidence 11 14789999999999884
No 24
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.71 E-value=1.8e-08 Score=65.38 Aligned_cols=45 Identities=29% Similarity=0.516 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHHHHH
Q 016751 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHL 67 (383)
Q Consensus 23 ~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~ 67 (383)
+..||+|++.+||.+|+++++++++.|||+|++++.++.+-..+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 457999999999999999999999999999999999988866543
No 25
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.68 E-value=1.5e-08 Score=63.36 Aligned_cols=39 Identities=36% Similarity=0.702 Sum_probs=36.4
Q ss_pred CCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHH
Q 016751 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVE 64 (383)
Q Consensus 26 Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~ 64 (383)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887643
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.48 E-value=3e-06 Score=73.21 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=123.9
Q ss_pred CCceEEEEccCccceeecCCCCCCC------------Cc--eeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCC
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNP------------RY--LGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRS 190 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~------------~~--~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t 190 (383)
+...+.+.|..+-+|..+||--... ++ ....++.. ..+.... -...+-|+.++
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~-------~yvWGGRND~egaCN~Ly~fDp~t 114 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK-------AYVWGGRNDDEGACNLLYEFDPET 114 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce-------EEEEcCccCcccccceeeeecccc
Confidence 4557899999999999999832211 00 11111110 1111111 34678899999
Q ss_pred Cceeeecc--CCCceeeeccCcccceeEECceEEEEEeeccCCC-CCCCcEEEEEECCCCeeeEe---CCCCCCCCCCCc
Q 016751 191 NSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHD-NSCPWLIVSFDFAKEIFQTV---MMPYDLSTDDAD 264 (383)
Q Consensus 191 ~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~-~~~~~~il~fD~~~~~~~~i---~lP~~~~~~~~~ 264 (383)
+.|+.... -+|..+..+. ++++++.+|..++.. .+ ......+.++|+.|.+|+.+ .-|..-+ ..
T Consensus 115 ~~W~~p~v~G~vPgaRDGHs-----AcV~gn~MyiFGGye--~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR---DF 184 (392)
T KOG4693|consen 115 NVWKKPEVEGFVPGARDGHS-----ACVWGNQMYIFGGYE--EDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR---DF 184 (392)
T ss_pred ccccccceeeecCCccCCce-----eeEECcEEEEecChH--HHHHhhhccceeEeccceeeeehhccCCCchhh---hh
Confidence 99986552 3454444333 788888899887653 00 11235789999999999998 2331322 23
Q ss_pred eEEEEeCCeEEEEEecCCC--------CccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEEEEEeeCCcEEEEEEeeCC
Q 016751 265 KYLNVFDGYLCVFATIPNN--------TFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHG 335 (383)
Q Consensus 265 ~~l~~~~g~L~~v~~~~~~--------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~ 335 (383)
..-.+.+|.++++++..+. +...-+|-.++- ..+.|.+..+-+.... ......+.-+|++|+. .+..
T Consensus 185 H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~F--GGYn 260 (392)
T KOG4693|consen 185 HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMF--GGYN 260 (392)
T ss_pred hhhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCCCcccccceEEEcceEEEe--cccc
Confidence 3455678999999876441 122234444443 2467887533332221 1222334457889888 4222
Q ss_pred ce------EEEEEeCCCCeEEEEEEecCc
Q 016751 336 GY------GLLVYNPHSDTFKCIGVHLPY 358 (383)
Q Consensus 336 ~~------~~~~yd~~t~~~~~v~~~~~~ 358 (383)
+. .+++||++|..|..++..|..
T Consensus 261 g~ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 261 GTLNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred hhhhhhhcceeecccccchheeeeccCCC
Confidence 21 599999999999999888764
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.46 E-value=1e-05 Score=74.15 Aligned_cols=213 Identities=13% Similarity=0.143 Sum_probs=128.6
Q ss_pred CceEEEEccCccceeecCCC--CCCCCceeEEEeccCCCCCCeEEEEEEe-----------cCeEEEEEcCCCceeeecc
Q 016751 132 RSLIYLWNPLIKKYMTLPRP--SLNPRYLGFGVNSVSGHLDDFKVVTISV-----------NADAEVYSLRSNSWKNIAY 198 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~--~~~~~~~~~g~d~~~~~~~~ykVv~~~~-----------~~~~~vyss~t~~W~~~~~ 198 (383)
++.+|.+|--+.+|..+-.+ |.+++....+..++ + +-.+.... -..+++|++.++.|+.+..
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s---~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~ 171 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS---N--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEF 171 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEecc---C--eEEEeccccCCcchhhhhhhhheeeeeeccchheeecc
Confidence 45799999999999987433 33332222222232 1 11111111 3477899999999998872
Q ss_pred -CCCceeeeccCcccceeEECceEEEEEeeccCC-CCCCCcEEEEEECCCCeeeEeCCCCCCC-CCCCceEEEEe-CCeE
Q 016751 199 -GFPRSIEINRSHINSSVFLNGSVHWCARFSCYH-DNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVF-DGYL 274 (383)
Q Consensus 199 -~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~-~~~~~~~il~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~-~g~L 274 (383)
..|.++..++ .|.....|.-.++-.-.. +-....-+.+||+.+-+|+.+..+ ... +.+...++.+. +|.+
T Consensus 172 ~g~PS~RSGHR-----MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps-ga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 172 GGGPSPRSGHR-----MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS-GAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred CCCCCCCccce-----eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC-CCCCCCCCcceEEecCCCcE
Confidence 3344444444 566666665555432000 001125789999999999999655 321 22245667777 8999
Q ss_pred EEEEecCC--------CCccEEEEEEeccC---CCCCCeEEEEEecCCCc--eeEEEEEeeCCcEEEEE-EeeC-C----
Q 016751 275 CVFATIPN--------NTFRSYELWVMKEY---GLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRG-ECRH-G---- 335 (383)
Q Consensus 275 ~~v~~~~~--------~~~~~l~iW~l~~~---~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~-~~~~-~---- 335 (383)
++.+++.. .+...-++|.|+-. ..+..|+++..+.+..- .--.++++.+++-++.| -+ + +
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~-D~eeeeE 324 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC-DLEEEEE 324 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee-cccccch
Confidence 99887643 14455689999743 24688999887765432 12235566666555442 11 1 0
Q ss_pred ------ceEEEEEeCCCCeEEEEEEec
Q 016751 336 ------GYGLLVYNPHSDTFKCIGVHL 356 (383)
Q Consensus 336 ------~~~~~~yd~~t~~~~~v~~~~ 356 (383)
...|+.||+..++|.+..+++
T Consensus 325 sl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 325 SLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred hhhhhhhhhhhheecccchhhHhhhcc
Confidence 015999999999998876654
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.07 E-value=0.00033 Score=68.71 Aligned_cols=207 Identities=10% Similarity=0.052 Sum_probs=124.1
Q ss_pred eEEEEccCccceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeecc--CCCcee
Q 016751 134 LIYLWNPLIKKYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAY--GFPRSI 204 (383)
Q Consensus 134 ~~~v~NP~t~~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~--~~p~~~ 204 (383)
+++++|-.++.|.........+.. ++...... . ++-++.... ...++.|+..|++|+.+.. .+|.++
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~---~-~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV---G-DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEE---C-CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc
Confidence 599999999888876554333211 11110000 1 111111111 3489999999999998773 223333
Q ss_pred eeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC-CCCCceEEEEeCCeEEEEEecCCC
Q 016751 205 EINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNN 283 (383)
Q Consensus 205 ~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~~g~L~~v~~~~~~ 283 (383)
..+. .+.++.++|..++.. ...+....+.+||+.+.+|..+... ... .....+.+++.+++++++++....
T Consensus 165 ~~Hs-----~~~~g~~l~vfGG~~--~~~~~~ndl~i~d~~~~~W~~~~~~-g~~P~pR~gH~~~~~~~~~~v~gG~~~~ 236 (482)
T KOG0379|consen 165 AGHS-----ATVVGTKLVVFGGIG--GTGDSLNDLHIYDLETSTWSELDTQ-GEAPSPRYGHAMVVVGNKLLVFGGGDDG 236 (482)
T ss_pred ccce-----EEEECCEEEEECCcc--CcccceeeeeeeccccccceecccC-CCCCCCCCCceEEEECCeEEEEeccccC
Confidence 3332 677778888888776 3233567899999999999998433 222 123567788899999999877632
Q ss_pred CccEEEEEEeccCCCCCCeEEEEEe---cCCCceeEEEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEEEec
Q 016751 284 TFRSYELWVMKEYGLTESWTKLYTI---EKPQRIWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIGVHL 356 (383)
Q Consensus 284 ~~~~l~iW~l~~~~~~~~W~~~~~i---~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~~~yd~~t~~~~~v~~~~ 356 (383)
+..--++|.++-. ..+|.+.... +........+ + .+..+++.|-.... -..++.||++++.|..+...+
T Consensus 237 ~~~l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~~-~-~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 237 DVYLNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSLT-V-SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred CceecceEeeecc--cceeeeccccCCCCCCcceeeeE-E-ECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 2344578999864 3778864433 2222222223 3 33345555211011 115899999999999986544
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.92 E-value=0.00033 Score=60.91 Aligned_cols=139 Identities=17% Similarity=0.309 Sum_probs=89.3
Q ss_pred cCeEEEEEcCCCceeeecc--CCCceeeeccCcccceeEECceEEEEEeecc----CCC--CCCCcEEEEEECCCCeeeE
Q 016751 180 NADAEVYSLRSNSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSC----YHD--NSCPWLIVSFDFAKEIFQT 251 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~----~~~--~~~~~~il~fD~~~~~~~~ 251 (383)
...+++++..|.+|+.+.. .+|.-+.++. ++..+|.+|..++..- ++. ...-..|++||+.|+.|..
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~-----a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r 230 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHT-----ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR 230 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhh-----hhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence 4578899999999998872 2232233444 6788899999987641 011 1223689999999999977
Q ss_pred e----CCCCCCCCCCCceEEEEeCCeEEEEEecCCC-CccEEEEEEeccCCCCCCeEEEEEecC-CCceeEEEEEeeCCc
Q 016751 252 V----MMPYDLSTDDADKYLNVFDGYLCVFATIPNN-TFRSYELWVMKEYGLTESWTKLYTIEK-PQRIWWPLGFTERGK 325 (383)
Q Consensus 252 i----~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~-~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~ 325 (383)
. .+| ..+ .....-+.+|++++++++.+. +..-.++|.++- ...-|.++..-.. +....+-+++..+++
T Consensus 231 ~p~~~~~P-~GR---RSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~~Gk~P~aRRRqC~~v~g~k 304 (392)
T KOG4693|consen 231 TPENTMKP-GGR---RSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISVRGKYPSARRRQCSVVSGGK 304 (392)
T ss_pred CCCCCcCC-Ccc---cccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeeeccCCCCCcccceeEEEECCE
Confidence 5 233 333 344567899999999988652 123346788775 3467988643221 111233345556678
Q ss_pred EEEE
Q 016751 326 IFIR 329 (383)
Q Consensus 326 i~~~ 329 (383)
+|+.
T Consensus 305 v~LF 308 (392)
T KOG4693|consen 305 VYLF 308 (392)
T ss_pred EEEe
Confidence 8887
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.89 E-value=0.00049 Score=67.55 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=106.2
Q ss_pred eEEEEEcCCCceeeecc--CCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeC----CC
Q 016751 182 DAEVYSLRSNSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM----MP 255 (383)
Q Consensus 182 ~~~vyss~t~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~----lP 255 (383)
.+++|+.++..|....+ ..|.++..+. .+.++..||.+++.. ........+.+||+.+.+|..+. .|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~-----~~~~~~~l~lfGG~~--~~~~~~~~l~~~d~~t~~W~~l~~~~~~P 161 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHS-----LSAVGDKLYLFGGTD--KKYRNLNELHSLDLSTRTWSLLSPTGDPP 161 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccccee-----EEEECCeEEEEcccc--CCCCChhheEeccCCCCcEEEecCcCCCC
Confidence 58999999999976653 3343333332 688899999998876 11222458999999999998872 23
Q ss_pred CCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEEEEEeeCCcEEEEEEeeC
Q 016751 256 YDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRH 334 (383)
Q Consensus 256 ~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~ 334 (383)
..+ ....++..+.+|+++++.........++|+++-. ...|.++.......- ...+..+..++++++. .+.
T Consensus 162 -~~r---~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~--gG~ 233 (482)
T KOG0379|consen 162 -PPR---AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVVGNKLLVF--GGG 233 (482)
T ss_pred -CCc---ccceEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCCCCCCCCCceEEEECCeEEEE--ecc
Confidence 333 5567788889999998876643356789999863 355999876654321 2233333344555555 211
Q ss_pred C-c-e---EEEEEeCCCCeEEEEEEec
Q 016751 335 G-G-Y---GLLVYNPHSDTFKCIGVHL 356 (383)
Q Consensus 335 ~-~-~---~~~~yd~~t~~~~~v~~~~ 356 (383)
. + . .++.+|+.+.+|+.+...+
T Consensus 234 ~~~~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 234 DDGDVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred ccCCceecceEeeecccceeeeccccC
Confidence 1 1 1 6999999999999765443
No 31
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.61 E-value=0.0038 Score=57.73 Aligned_cols=157 Identities=14% Similarity=0.226 Sum_probs=97.7
Q ss_pred CeEEEEEcCCCceeeecc-CCCceeeeccCcccceeEEC-ceEEEEEeeccCCC---CCCCcEEEEEECCCCeeeEeCCC
Q 016751 181 ADAEVYSLRSNSWKNIAY-GFPRSIEINRSHINSSVFLN-GSVHWCARFSCYHD---NSCPWLIVSFDFAKEIFQTVMMP 255 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~-~~p~~~~~~~~~~~~~v~~~-G~lYw~~~~~~~~~---~~~~~~il~fD~~~~~~~~i~lP 255 (383)
..++.|+.++++|+.+.. ..|.++..++ +|++- |.+|..++....+. =+...-+..||+.+.+|..+.++
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq-----~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~ 172 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQ-----AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG 172 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccce-----eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC
Confidence 477899999999998872 3344444444 44444 76666665531110 01124678899999999999877
Q ss_pred CCCCCCCCceEEEEeCCeEEEEEecCCCC---ccEEEEEEeccCCCCCCeEEEEEecCC---CceeEEEEEeeCCcEEEE
Q 016751 256 YDLSTDDADKYLNVFDGYLCVFATIPNNT---FRSYELWVMKEYGLTESWTKLYTIEKP---QRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 256 ~~~~~~~~~~~l~~~~g~L~~v~~~~~~~---~~~l~iW~l~~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~g~i~~~ 329 (383)
..-..+..++++.+..+|.++++.++.. +.-.++|.++-+ ...|.+... +-. ...-..+.+..+|.|++.
T Consensus 173 -g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep-sga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 173 -GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP-SGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred -CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC-CCCCCCCCCcceEEecCCCcEEEE
Confidence 5444456789999999999999876531 122367877652 467999765 221 101222445556767776
Q ss_pred E-Eee--------CCc--eEEEEEeCCC
Q 016751 330 G-ECR--------HGG--YGLLVYNPHS 346 (383)
Q Consensus 330 ~-~~~--------~~~--~~~~~yd~~t 346 (383)
| .++ .+. ..++..++++
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 2 221 011 1578888887
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00011 Score=65.25 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChH
Q 016751 22 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKT 61 (383)
Q Consensus 22 ~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~ 61 (383)
++..||||+++.||+.||.++|+++..|||+|.++.++..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 3678999999999999999999999999999999987644
No 33
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.08 E-value=0.19 Score=44.59 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=113.2
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
...+|.|++.+. ..++++.++|.+++...+..+. ..++.++.. .+.+-|. ......+++..+++++.+
T Consensus 8 d~~~g~l~~~D~--~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~---~g~l~v~---~~~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 8 DPRDGRLYWVDI--PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP---DGRLYVA---DSGGIAVVDPDTGKVTVL 75 (246)
T ss_dssp ETTTTEEEEEET--TTTEEEEEETTTTEEEEEESSS----EEEEEEECT---TSEEEEE---ETTCEEEEETTTTEEEEE
T ss_pred ECCCCEEEEEEc--CCCEEEEEECCCCeEEEEecCC----CceEEEEcc---CCEEEEE---EcCceEEEecCCCcEEEE
Confidence 444677777664 6789999999998876544433 246666643 3322222 256778889999999877
Q ss_pred ccCCCc---eeeeccCcccceeEECceEEEEEeeccCCCCCCC--cEEEEEECCCCeeeEe----CCCCCCCCCCCceEE
Q 016751 197 AYGFPR---SIEINRSHINSSVFLNGSVHWCARFSCYHDNSCP--WLIVSFDFAKEIFQTV----MMPYDLSTDDADKYL 267 (383)
Q Consensus 197 ~~~~p~---~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~--~~il~fD~~~~~~~~i----~lP~~~~~~~~~~~l 267 (383)
. ..+. ....... ..+--+|.+|+..... ...... ..+..+|.. .+...+ ..| .-+
T Consensus 76 ~-~~~~~~~~~~~~ND---~~vd~~G~ly~t~~~~--~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---------NGi 139 (246)
T PF08450_consen 76 A-DLPDGGVPFNRPND---VAVDPDGNLYVTDSGG--GGASGIDPGSVYRIDPD-GKVTVVADGLGFP---------NGI 139 (246)
T ss_dssp E-EEETTCSCTEEEEE---EEE-TTS-EEEEEECC--BCTTCGGSEEEEEEETT-SEEEEEEEEESSE---------EEE
T ss_pred e-eccCCCcccCCCce---EEEcCCCCEEEEecCC--CccccccccceEEECCC-CeEEEEecCcccc---------cce
Confidence 6 3321 1111111 1456689988765543 111111 679999999 555443 333 123
Q ss_pred EEe-CC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe-cCCCc--eeEEEEEeeCCcEEEEEEeeCCceEEEEE
Q 016751 268 NVF-DG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI-EKPQR--IWWPLGFTERGKIFIRGECRHGGYGLLVY 342 (383)
Q Consensus 268 ~~~-~g-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~y 342 (383)
+.. +| .|++...... +||.++-......+.....+ ..... ...-+++..+|+|++. ....+ .+.+|
T Consensus 140 ~~s~dg~~lyv~ds~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va--~~~~~-~I~~~ 210 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNG------RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA--DWGGG-RIVVF 210 (246)
T ss_dssp EEETTSSEEEEEETTTT------EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE--EETTT-EEEEE
T ss_pred EECCcchheeecccccc------eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE--EcCCC-EEEEE
Confidence 333 34 5666665443 36666543223345543333 33221 1333556678899998 62344 59999
Q ss_pred eCCCCeEEEEEEe
Q 016751 343 NPHSDTFKCIGVH 355 (383)
Q Consensus 343 d~~t~~~~~v~~~ 355 (383)
|++.+....+...
T Consensus 211 ~p~G~~~~~i~~p 223 (246)
T PF08450_consen 211 DPDGKLLREIELP 223 (246)
T ss_dssp ETTSCEEEEEE-S
T ss_pred CCCccEEEEEcCC
Confidence 9996667777766
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.07 E-value=0.012 Score=53.23 Aligned_cols=40 Identities=25% Similarity=0.519 Sum_probs=36.5
Q ss_pred CCCCC----HHHHHHHHhcCChhhhHHhhccchhhHhhcCChHH
Q 016751 23 SFRLP----EDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 62 (383)
Q Consensus 23 ~~~Lp----~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F 62 (383)
+..|| +++.+.||+.|...+|..|..|||+|+++++++-.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 46789 99999999999999999999999999999998643
No 35
>PF13964 Kelch_6: Kelch motif
Probab=96.97 E-value=0.0021 Score=41.69 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=33.0
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 255 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP 255 (383)
+|.++|.||.+++.. ........+..||+.+++|+.+ ++|
T Consensus 7 ~v~~~~~iyv~GG~~--~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYD--NSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEECCEEEEECCCC--CCCCccccEEEEcCCCCcEEECCCCC
Confidence 789999999999876 1134457999999999999998 666
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.63 E-value=0.0057 Score=38.94 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=33.3
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 255 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP 255 (383)
++.++|.+|.+++.. ........+..||+.+++|+.+ +||
T Consensus 7 ~~~~~~~iyv~GG~~--~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYD--GNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEETTEEEEEEEBE--STSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEECCEEEEEeeec--ccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 789999999999987 2245557999999999999987 554
No 37
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.51 E-value=0.0016 Score=58.12 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHhcCC-----hhhhHHhhccchhhHhhcCChHHHHHH
Q 016751 23 SFRLPEDVMIDIFLRLE-----VKNLARLRCVCKSWNTLLTSKTFVEIH 66 (383)
Q Consensus 23 ~~~Lp~Dll~eIL~rLP-----~~~l~r~r~VcK~W~~li~s~~F~~~~ 66 (383)
+..||+|+|.+||.++= +.+|.++.+|||.|+-..++|.|-+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 46799999999999875 489999999999999999999886654
No 38
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.49 E-value=0.39 Score=42.79 Aligned_cols=127 Identities=14% Similarity=0.162 Sum_probs=82.5
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeee-EeCCCCCCCCC---------CCceEEEEeCCeEEEEEecCCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTD---------DADKYLNVFDGYLCVFATIPNN 283 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~---------~~~~~l~~~~g~L~~v~~~~~~ 283 (383)
-|+.||.+|+..... ..|+.||+.++... ...|| ..... .....+++-+..|.++....++
T Consensus 74 ~vVYngslYY~~~~s--------~~IvkydL~t~~v~~~~~L~-~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 74 HVVYNGSLYYNKYNS--------RNIVKYDLTTRSVVARRELP-GAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred eEEECCcEEEEecCC--------ceEEEEECcCCcEEEEEECC-ccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 688999999977643 69999999999988 66888 54422 1456788889999888776542
Q ss_pred CccEEEEEEeccCC--CCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEee-CCceEEEEEeCCCCeEEEEEEe
Q 016751 284 TFRSYELWVMKEYG--LTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR-HGGYGLLVYNPHSDTFKCIGVH 355 (383)
Q Consensus 284 ~~~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~yd~~t~~~~~v~~~ 355 (383)
...+.|-.++... ....|.- .++.... . -++-..|.+|.+.... .+.+..++||+.|++-+.+.+.
T Consensus 145 -~g~ivvskld~~tL~v~~tw~T--~~~k~~~-~--naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 145 -NGNIVVSKLDPETLSVEQTWNT--SYPKRSA-G--NAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred -CCcEEEEeeCcccCceEEEEEe--ccCchhh-c--ceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 2358888887532 2344543 2222211 1 1233446777772220 1133679999999988877654
No 39
>smart00284 OLF Olfactomedin-like domains.
Probab=96.36 E-value=0.14 Score=45.41 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=80.3
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCC---------CCCceEEEEeCCeEEEEEecCCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLST---------DDADKYLNVFDGYLCVFATIPNN 283 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~---------~~~~~~l~~~~g~L~~v~~~~~~ 283 (383)
-|+.||.+|+..... ..|+.||+.+++.... .+| ...- ....+.|++-+..|-++....+
T Consensus 79 ~VVYngslYY~~~~s--------~~iiKydL~t~~v~~~~~Lp-~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~- 148 (255)
T smart00284 79 VVVYNGSLYFNKFNS--------HDICRFDLTTETYQKEPLLN-GAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ- 148 (255)
T ss_pred EEEECceEEEEecCC--------ccEEEEECCCCcEEEEEecC-ccccccccccccCCCccEEEEEcCCceEEEEeccC-
Confidence 699999999965443 6899999999999644 577 4321 1245789999999988876654
Q ss_pred CccEEEEEEeccCC--CCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEe-eCCceEEEEEeCCCCeEEEEEEe
Q 016751 284 TFRSYELWVMKEYG--LTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGEC-RHGGYGLLVYNPHSDTFKCIGVH 355 (383)
Q Consensus 284 ~~~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~yd~~t~~~~~v~~~ 355 (383)
....+.|-+|+... ....|.- .++.... . -++-..|.+|..... ..+.+..++||..|++-+.+.+.
T Consensus 149 ~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa-~--naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 149 NAGKIVISKLNPATLTIENTWIT--TYNKRSA-S--NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CCCCEEEEeeCcccceEEEEEEc--CCCcccc-c--ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 23578888887632 2234544 2222211 1 122334667777110 01233689999999887766553
No 40
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=1.1 Score=41.18 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=77.9
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEE--EEEECCCCeeeEe-CCC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLI--VSFDFAKEIFQTV-MMP 255 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~i--l~fD~~~~~~~~i-~lP 255 (383)
...+-+|+..++.|+.+. ..|+-..... ++...|. +-.+.++- ..+-....+ .-|.-...+|..+ .+|
T Consensus 195 n~ev~sy~p~~n~W~~~G-~~pf~~~aGs-----a~~~~~n~~~lInGEi--KpGLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLG-ENPFYGNAGS-----AVVIKGNKLTLINGEI--KPGLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred cccccccccccchhhhcC-cCcccCccCc-----ceeecCCeEEEEccee--cCCccccceeEEEeccCceeeeeccCCC
Confidence 557889999999999999 7776554432 4444444 54444432 112222333 4455568899888 677
Q ss_pred CCCCCCC----CceEEEEeCCeEEEEEecCCC------------------CccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 016751 256 YDLSTDD----ADKYLNVFDGYLCVFATIPNN------------------TFRSYELWVMKEYGLTESWTKLYTIEKPQR 313 (383)
Q Consensus 256 ~~~~~~~----~~~~l~~~~g~L~~v~~~~~~------------------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 313 (383)
.....+ ....-+.++|.+.+.++.... -..+-+||.++. ++|..+.++|...
T Consensus 267 -~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~l- 340 (381)
T COG3055 267 -APIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQGL- 340 (381)
T ss_pred -CCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCCc-
Confidence 333221 222334556666666543210 123346788774 6799999999742
Q ss_pred eeEEEEEeeCCcEEEE
Q 016751 314 IWWPLGFTERGKIFIR 329 (383)
Q Consensus 314 ~~~~~~~~~~g~i~~~ 329 (383)
..-+.+.-++.|+++
T Consensus 341 -~YG~s~~~nn~vl~I 355 (381)
T COG3055 341 -AYGVSLSYNNKVLLI 355 (381)
T ss_pred -cceEEEecCCcEEEE
Confidence 222334445567777
No 41
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.61 E-value=0.34 Score=46.44 Aligned_cols=198 Identities=13% Similarity=0.237 Sum_probs=102.6
Q ss_pred ceEEEEccCccceeecCCCCCC--CCc--eeEEEeccCCCCCCeEEEEEEe-----cCeEEEEEcCCCc--eeeeccCCC
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLN--PRY--LGFGVNSVSGHLDDFKVVTISV-----NADAEVYSLRSNS--WKNIAYGFP 201 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~--~~~--~~~g~d~~~~~~~~ykVv~~~~-----~~~~~vyss~t~~--W~~~~~~~p 201 (383)
.++.++|.+|+||.. |.-.-. +.. +||.+|. -|++++.. ...-+.|.+...+ |+.+....|
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG-------trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p 128 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG-------TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTP 128 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCchhhcceEecC-------ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCC
Confidence 378999999999984 332211 112 4444442 35555442 5666788887765 555542222
Q ss_pred ------ceeeeccCcccceeEECceEEEEEeeccCCCCCC--------CcEEEEEECC--CC--eeeEe----CCCCCCC
Q 016751 202 ------RSIEINRSHINSSVFLNGSVHWCARFSCYHDNSC--------PWLIVSFDFA--KE--IFQTV----MMPYDLS 259 (383)
Q Consensus 202 ------~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~--------~~~il~fD~~--~~--~~~~i----~lP~~~~ 259 (383)
.++..+. -+.++++.|.+++-. .+.+. -..+...++. .. -|... .+| ..+
T Consensus 129 ~nG~pPCPRlGHS-----Fsl~gnKcYlFGGLa--NdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P-~pR 200 (830)
T KOG4152|consen 129 KNGPPPCPRLGHS-----FSLVGNKCYLFGGLA--NDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP-PPR 200 (830)
T ss_pred CCCCCCCCccCce-----eEEeccEeEEecccc--ccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC-CCc
Confidence 2222221 356678888888654 22111 1233333433 33 34432 455 555
Q ss_pred CCCCceEEEEeC---CeEEEEEecCCCCccEE-EEEEeccCCCCCCeEEEE---EecCCCceeEEEEEeeCCcEEEEE-E
Q 016751 260 TDDADKYLNVFD---GYLCVFATIPNNTFRSY-ELWVMKEYGLTESWTKLY---TIEKPQRIWWPLGFTERGKIFIRG-E 331 (383)
Q Consensus 260 ~~~~~~~l~~~~---g~L~~v~~~~~~~~~~l-~iW~l~~~~~~~~W~~~~---~i~~~~~~~~~~~~~~~g~i~~~~-~ 331 (383)
+.+.-..-.+-+ -++++.++..+ .++ ++|.|+-. ...|.+.. ..+++.-.. .+....+++|+.| +
T Consensus 201 ESHTAViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSLH--sa~~IGnKMyvfGGW 273 (830)
T KOG4152|consen 201 ESHTAVIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLDLD--TLTWNKPSLSGVAPLPRSLH--SATTIGNKMYVFGGW 273 (830)
T ss_pred ccceeEEEEeccCCcceEEEEccccc---ccccceeEEecc--eeecccccccCCCCCCcccc--cceeecceeEEecce
Confidence 543222222323 25677666655 444 79999863 46798743 223332111 1222334566652 1
Q ss_pred e------------eCCce---EEEEEeCCCCeEEEEE
Q 016751 332 C------------RHGGY---GLLVYNPHSDTFKCIG 353 (383)
Q Consensus 332 ~------------~~~~~---~~~~yd~~t~~~~~v~ 353 (383)
. ..+|+ .+-+.|+.|..|+.+-
T Consensus 274 VPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred eeeeccccccccccceeeeccceeeeeecchheeeee
Confidence 1 01222 5788899999998773
No 42
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.55 E-value=0.7 Score=43.35 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=84.1
Q ss_pred CeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEe-----cC----
Q 016751 112 DLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISV-----NA---- 181 (383)
Q Consensus 112 ~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~-----~~---- 181 (383)
.+.+.+..+.-|+..+ ......|+|+.|+....+|.+...... +.+.. ++. +..... ..
T Consensus 68 ~~~F~al~gskIv~~d---~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~V------G~~--LY~m~~~~~~~~~~~~~ 136 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVD---QSGRTLVYDTDTRAVATGPRLHSPKRCPISVSV------GDK--LYAMDRSPFPEPAGRPD 136 (342)
T ss_pred eeEEEEecCCeEEEEc---CCCCeEEEECCCCeEeccCCCCCCCcceEEEEe------CCe--EEEeeccCccccccCcc
Confidence 3444444444454444 467799999999999999987765322 22211 111 222221 00
Q ss_pred --eEEEEEc----------CCCceeeeccCCCceeee------ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEE
Q 016751 182 --DAEVYSL----------RSNSWKNIAYGFPRSIEI------NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFD 243 (383)
Q Consensus 182 --~~~vyss----------~t~~W~~~~~~~p~~~~~------~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD 243 (383)
.+|+++- ++-+|+.++ .+|+.... ..+. +|+ +|.--|+...+ ......+||
T Consensus 137 ~~~FE~l~~~~~~~~~~~~~~w~W~~LP-~PPf~~~~~~~~~~i~sY---avv-~g~~I~vS~~~------~~~GTysfD 205 (342)
T PF07893_consen 137 FPCFEALVYRPPPDDPSPEESWSWRSLP-PPPFVRDRRYSDYRITSY---AVV-DGRTIFVSVNG------RRWGTYSFD 205 (342)
T ss_pred ceeEEEeccccccccccCCCcceEEcCC-CCCccccCCcccceEEEE---EEe-cCCeEEEEecC------CceEEEEEE
Confidence 4555522 234788888 66654432 1222 455 88888886654 113799999
Q ss_pred CCCCeeeEe---CCCCCCCCC---CCceEEEEe--C--CeEEEEEecC
Q 016751 244 FAKEIFQTV---MMPYDLSTD---DADKYLNVF--D--GYLCVFATIP 281 (383)
Q Consensus 244 ~~~~~~~~i---~lP~~~~~~---~~~~~l~~~--~--g~L~~v~~~~ 281 (383)
+.+.+|+.. .|||.+... .....++-+ + ++||......
T Consensus 206 t~~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~ 253 (342)
T PF07893_consen 206 TESHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS 253 (342)
T ss_pred cCCcceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence 999999998 899754421 122333332 2 3777766544
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.30 E-value=0.055 Score=34.75 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=31.6
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM 253 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~ 253 (383)
++.++|++|..++............+..||+.+.+|+.+.
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 7899999999998810023455678999999999999874
No 44
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.19 E-value=3.8 Score=40.89 Aligned_cols=241 Identities=16% Similarity=0.172 Sum_probs=123.9
Q ss_pred cCCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHH-HHHhcCCCCCC--cEEEeecCC---CCceeeccc-
Q 016751 21 CSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVE-IHLNQSMRNPR--PLLFRHGIS---PSYLGFYST- 93 (383)
Q Consensus 21 ~~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~-~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~- 93 (383)
.-+..||.++...||..|+.+++++++.||+.|+.++.+..... .+.......+. ...+..... .....+|..
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~ 185 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRR 185 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhh
Confidence 35678999999999999999999999999999999998655544 33332222110 000000000 000012211
Q ss_pred --CCCcccccCCCCCC----CCCCCeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCC
Q 016751 94 --KCKEFEDLCDPPFR----TQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSG 167 (383)
Q Consensus 94 --~~~~~~~l~~p~~~----~~~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~ 167 (383)
....|.....+... .....+....-.+|.+.... ....+-+++..++....-+.........++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s---~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~---- 258 (537)
T KOG0274|consen 186 FRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGS---DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFP---- 258 (537)
T ss_pred hhccccccccccccceeecccCcchhhhheeecCeEEecC---CCceeEEeecccceEEEeeccCCCCCceeEEEe----
Confidence 11122222222110 00111111111133333332 445566899999888766444333222344433
Q ss_pred CCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC
Q 016751 168 HLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE 247 (383)
Q Consensus 168 ~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~ 247 (383)
....+++-.....++.|.+..++.-..+-....-... .+...+... .++ ..+..|.++|+.+.
T Consensus 259 -~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~--------~~~~~~~~~-~sg-------s~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 259 -SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR--------CLTIDPFLL-VSG-------SRDNTVKVWDVTNG 321 (537)
T ss_pred -cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE--------EEEccCceE-eec-------cCCceEEEEeccCc
Confidence 3345555555466777888777755433311111000 122222222 221 13468999999987
Q ss_pred eeeEeCC-CCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEecc
Q 016751 248 IFQTVMM-PYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 295 (383)
Q Consensus 248 ~~~~i~l-P~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~ 295 (383)
....+.- + . ....-+.+++.+.+.+..++ .+.||....
T Consensus 322 ~~l~l~~~h-~-----~~V~~v~~~~~~lvsgs~d~----~v~VW~~~~ 360 (537)
T KOG0274|consen 322 ACLNLLRGH-T-----GPVNCVQLDEPLLVSGSYDG----TVKVWDPRT 360 (537)
T ss_pred ceEEEeccc-c-----ccEEEEEecCCEEEEEecCc----eEEEEEhhh
Confidence 7765532 3 1 22344555666666666664 899998873
No 45
>PF13964 Kelch_6: Kelch motif
Probab=95.17 E-value=0.067 Score=34.46 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=27.6
Q ss_pred EccCceEEEeecCC----CCceEEEEccCccceeecCCCCCC
Q 016751 117 GSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLN 154 (383)
Q Consensus 117 ~s~~Gll~~~~~~~----~~~~~~v~NP~t~~~~~LP~~~~~ 154 (383)
.+.+|-|.+..+.. ....++++||.|++|..+|+++..
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 44556655554321 256899999999999999998864
No 46
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.68 E-value=4.2 Score=38.87 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=57.5
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW 291 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW 291 (383)
++..+|.+|.....+ .+.++|..+. .|+. +.+ .. ..++..+|+|++..... .+...
T Consensus 252 P~v~~~~vy~~~~~g---------~l~ald~~tG~~~W~~-~~~-~~------~~~~~~~~~vy~~~~~g-----~l~al 309 (394)
T PRK11138 252 PVVVGGVVYALAYNG---------NLVALDLRSGQIVWKR-EYG-SV------NDFAVDGGRIYLVDQND-----RVYAL 309 (394)
T ss_pred cEEECCEEEEEEcCC---------eEEEEECCCCCEEEee-cCC-Cc------cCcEEECCEEEEEcCCC-----eEEEE
Confidence 788899999876554 8999999765 5654 222 11 12344566776655322 22222
Q ss_pred EeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 292 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 292 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
..+. .+..|.... ..... ...|+. .+|.||+. . .++ .++++|.+|++..
T Consensus 310 d~~t--G~~~W~~~~-~~~~~-~~sp~v--~~g~l~v~--~-~~G-~l~~ld~~tG~~~ 358 (394)
T PRK11138 310 DTRG--GVELWSQSD-LLHRL-LTAPVL--YNGYLVVG--D-SEG-YLHWINREDGRFV 358 (394)
T ss_pred ECCC--CcEEEcccc-cCCCc-ccCCEE--ECCEEEEE--e-CCC-EEEEEECCCCCEE
Confidence 2221 223454311 11111 122222 35778777 5 555 4999999998754
No 47
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.58 E-value=2.9 Score=36.48 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=94.9
Q ss_pred cCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC--ceee-
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN--SWKN- 195 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~--~W~~- 195 (383)
.+|.++... ....++.+|+.|++...--..+...... +. ..+=+|++......+..++..++ .|+.
T Consensus 35 ~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~-----~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 35 DGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGA-----PV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp ETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSG-----EE---EETTEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred eCCEEEEEc---CCCEEEEEECCCCCEEEEeeccccccce-----ee---ecccccccccceeeeEecccCCcceeeeec
Confidence 678887775 6889999999998855432222111011 11 11122333322347788887665 7984
Q ss_pred eccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe--eeEe-CCCCCCCCC-----CCceEE
Q 016751 196 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTV-MMPYDLSTD-----DADKYL 267 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~--~~~i-~lP~~~~~~-----~~~~~l 267 (383)
.. ..+......... ....++.+|...... .+.++|+.+.+ |..- ..| ..... .....+
T Consensus 104 ~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g---------~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 104 LT-SSPPAGVRSSSS---PAVDGDRLYVGTSSG---------KLVALDPKTGKLLWKYPVGEP-RGSSPISSFSDINGSP 169 (238)
T ss_dssp E--SSCTCSTB--SE---EEEETTEEEEEETCS---------EEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEE
T ss_pred cc-cccccccccccC---ceEecCEEEEEeccC---------cEEEEecCCCcEEEEeecCCC-CCCcceeeecccccce
Confidence 44 322221111111 344466777655444 89999988664 4432 333 21110 012334
Q ss_pred EEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 016751 268 NVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 268 ~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
...+|.+++..... ..+.+ -++. .+..|.. +... ........++.+|+. . .++ +++++|++|+
T Consensus 170 ~~~~~~v~~~~~~g----~~~~~-d~~t--g~~~w~~----~~~~--~~~~~~~~~~~l~~~--~-~~~-~l~~~d~~tG 232 (238)
T PF13360_consen 170 VISDGRVYVSSGDG----RVVAV-DLAT--GEKLWSK----PISG--IYSLPSVDGGTLYVT--S-SDG-RLYALDLKTG 232 (238)
T ss_dssp ECCTTEEEEECCTS----SEEEE-ETTT--TEEEEEE----CSS---ECECEECCCTEEEEE--E-TTT-EEEEEETTTT
T ss_pred EEECCEEEEEcCCC----eEEEE-ECCC--CCEEEEe----cCCC--ccCCceeeCCEEEEE--e-CCC-EEEEEECCCC
Confidence 44457555544332 23333 3332 1223622 2211 111123345566666 4 455 4999999999
Q ss_pred eEEE
Q 016751 348 TFKC 351 (383)
Q Consensus 348 ~~~~ 351 (383)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 8654
No 48
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.40 E-value=0.15 Score=46.75 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=82.6
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECc-eEEEEEeeccCC-----------CC--------------
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNG-SVHWCARFSCYH-----------DN-------------- 233 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G-~lYw~~~~~~~~-----------~~-------------- 233 (383)
...++.|++.+++|..++...|....- .. ++..++ .+|+.++..... +.
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~gl~G-~~----~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~ 186 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTGLVG-AS----TFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFD 186 (381)
T ss_pred eeeeEEecCCCChhheecccccccccc-ce----eEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhC
Confidence 458899999999999998555666332 22 566666 899888765310 00
Q ss_pred ------CCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEE
Q 016751 234 ------SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLY 306 (383)
Q Consensus 234 ------~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 306 (383)
-....+++||+.+++|+.. ..|+-... ...++.-+++|.++.+.-..+-++..+|+.+-..++..|.+..
T Consensus 187 ~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a---Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 187 KKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNA---GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred CCHHHhcccccccccccccchhhhcCcCcccCcc---CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 1125789999999999998 57843331 2233334567888876544444666777776554567899987
Q ss_pred EecCC
Q 016751 307 TIEKP 311 (383)
Q Consensus 307 ~i~~~ 311 (383)
.++.+
T Consensus 264 ~lp~~ 268 (381)
T COG3055 264 DLPAP 268 (381)
T ss_pred CCCCC
Confidence 77654
No 49
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.38 E-value=1.2 Score=42.36 Aligned_cols=197 Identities=15% Similarity=0.161 Sum_probs=108.7
Q ss_pred ccCccceeecCCCCCCC---CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceee-eccCCCceeeeccCcccce
Q 016751 139 NPLIKKYMTLPRPSLNP---RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKN-IAYGFPRSIEINRSHINSS 214 (383)
Q Consensus 139 NP~t~~~~~LP~~~~~~---~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~-~~~~~p~~~~~~~~~~~~~ 214 (383)
+|-++-|....-++... ....+.+.|.+ ..+|-|-. ...+++|++.+.+=+. +. ..-.... +. .
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~--P~d~aVt~---S~rvqly~~~~~~~~k~~s-rFk~~v~-s~-----~ 75 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKH--PYDFAVTS---SVRVQLYSSVTRSVRKTFS-RFKDVVY-SV-----D 75 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCCCC--CCceEEec---ccEEEEEecchhhhhhhHH-hhcccee-EE-----E
Confidence 44555555543333322 12556666652 34455544 7799999998853221 22 1111111 00 3
Q ss_pred eEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEe---CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEE
Q 016751 215 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTV---MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYEL 290 (383)
Q Consensus 215 v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i---~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~i 290 (383)
+..+|.|...+... ..|-.||..+... ..+ ..| .. .......++.+.+.+. ++ ....+
T Consensus 76 fR~DG~LlaaGD~s--------G~V~vfD~k~r~iLR~~~ah~ap-v~-----~~~f~~~d~t~l~s~s-Dd---~v~k~ 137 (487)
T KOG0310|consen 76 FRSDGRLLAAGDES--------GHVKVFDMKSRVILRQLYAHQAP-VH-----VTKFSPQDNTMLVSGS-DD---KVVKY 137 (487)
T ss_pred eecCCeEEEccCCc--------CcEEEeccccHHHHHHHhhccCc-ee-----EEEecccCCeEEEecC-CC---ceEEE
Confidence 45579998876554 6899999665322 111 222 11 1223334455554444 44 58999
Q ss_pred EEeccCCCCCCeEEEEEecCCCceeEEEEEeeC-CcEEEEEEeeCCceEEEEEeCCCCeEEEEEEecCcceeEEeeeecc
Q 016751 291 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTER-GKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVES 369 (383)
Q Consensus 291 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~~~~~~~~~~~~~y~~s 369 (383)
|.+... . . +.++.-...+.+...+... +-|++. +.+++ ++-.||.++.+-+.+++. .-.-+|+
T Consensus 138 ~d~s~a---~--v-~~~l~~htDYVR~g~~~~~~~hivvt--GsYDg-~vrl~DtR~~~~~v~eln-------hg~pVe~ 201 (487)
T KOG0310|consen 138 WDLSTA---Y--V-QAELSGHTDYVRCGDISPANDHIVVT--GSYDG-KVRLWDTRSLTSRVVELN-------HGCPVES 201 (487)
T ss_pred EEcCCc---E--E-EEEecCCcceeEeeccccCCCeEEEe--cCCCc-eEEEEEeccCCceeEEec-------CCCceee
Confidence 999862 1 3 4455444335665555543 347776 54566 599999999873333443 2234677
Q ss_pred eeccCCCccccc
Q 016751 370 IIEPVSQSLILS 381 (383)
Q Consensus 370 lv~~~~~~~~~~ 381 (383)
.+.++++++|.+
T Consensus 202 vl~lpsgs~ias 213 (487)
T KOG0310|consen 202 VLALPSGSLIAS 213 (487)
T ss_pred EEEcCCCCEEEE
Confidence 788888877765
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.06 E-value=1.4 Score=39.05 Aligned_cols=168 Identities=14% Similarity=0.162 Sum_probs=94.3
Q ss_pred eEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCC----CeeeEeCCCCC
Q 016751 182 DAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK----EIFQTVMMPYD 257 (383)
Q Consensus 182 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~----~~~~~i~lP~~ 257 (383)
...+||..+++++.+. +.....++.. .+.-||.+.-.++.. +....+-.|++.+ ..|... | .
T Consensus 47 ~s~~yD~~tn~~rpl~--v~td~FCSgg----~~L~dG~ll~tGG~~-----~G~~~ir~~~p~~~~~~~~w~e~--~-~ 112 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT--VQTDTFCSGG----AFLPDGRLLQTGGDN-----DGNKAIRIFTPCTSDGTCDWTES--P-N 112 (243)
T ss_pred EEEEEecCCCcEEecc--CCCCCcccCc----CCCCCCCEEEeCCCC-----ccccceEEEecCCCCCCCCceEC--c-c
Confidence 4578999999999877 3333222222 566788887666553 2445788898865 567553 1 1
Q ss_pred CC-CCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCC-CCCCeEEEEEec--CCCceeEEEEEeeCCcEEEEEEe
Q 016751 258 LS-TDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYG-LTESWTKLYTIE--KPQRIWWPLGFTERGKIFIRGEC 332 (383)
Q Consensus 258 ~~-~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~ 332 (383)
.. ..+.+.....+ +|++.++++... ...+.|=-+... ....|....... ...-.+-.+.+..+|+|++. .
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~---~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~--a 187 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNN---PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF--A 187 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCC---CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE--E
Confidence 11 12245555554 589999988765 455655432211 111222111111 11102333556788999998 5
Q ss_pred eCCceEEEEEeCCCCeE-EEE-EEecCcceeEEeeeecceeccC
Q 016751 333 RHGGYGLLVYNPHSDTF-KCI-GVHLPYYAIQVLNFVESIIEPV 374 (383)
Q Consensus 333 ~~~~~~~~~yd~~t~~~-~~v-~~~~~~~~~~~~~y~~slv~~~ 374 (383)
... -..||.+++++ +.+ .+.+. .+.++..-|-|=++
T Consensus 188 -n~~--s~i~d~~~n~v~~~lP~lPg~---~R~YP~sgssvmLP 225 (243)
T PF07250_consen 188 -NRG--SIIYDYKTNTVVRTLPDLPGG---PRNYPASGSSVMLP 225 (243)
T ss_pred -cCC--cEEEeCCCCeEEeeCCCCCCC---ceecCCCcceEEec
Confidence 333 57889999976 555 33332 45666666554443
No 51
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=93.86 E-value=0.12 Score=33.02 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=24.6
Q ss_pred eeEE-CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCC
Q 016751 214 SVFL-NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 255 (383)
Q Consensus 214 ~v~~-~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP 255 (383)
++.+ ++.+|..++.. .+......+..||+.+++|+.+ ++|
T Consensus 7 ~~~~~~~~i~v~GG~~--~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRD--SSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEE-TTEEEEE--EE--E-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEeCCeEEEECCCC--CCCcccCCEEEEECCCCEEEECCCCC
Confidence 5566 58999998876 2223446889999999999998 444
No 52
>smart00612 Kelch Kelch domain.
Probab=93.12 E-value=0.11 Score=32.59 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=21.8
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeec
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEIN 207 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~ 207 (383)
...+++|+.++++|+..+ +++..+..+
T Consensus 14 ~~~v~~yd~~~~~W~~~~-~~~~~r~~~ 40 (47)
T smart00612 14 LKSVEVYDPETNKWTPLP-SMPTPRSGH 40 (47)
T ss_pred eeeEEEECCCCCeEccCC-CCCCccccc
Confidence 357899999999999998 888766543
No 53
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.89 E-value=3 Score=37.20 Aligned_cols=126 Identities=15% Similarity=0.201 Sum_probs=78.8
Q ss_pred CCCeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEe--cCeEEEE
Q 016751 110 LADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISV--NADAEVY 186 (383)
Q Consensus 110 ~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~--~~~~~vy 186 (383)
....-+++.-+|-|-+... ..+.+...||.+..-..+|++.... ..=.++.|+. . -+.+.. ...++.|
T Consensus 189 ~gpyGi~atpdGsvwyasl--agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi---g----~~wittwg~g~l~rf 259 (353)
T COG4257 189 GGPYGICATPDGSVWYASL--AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI---G----RAWITTWGTGSLHRF 259 (353)
T ss_pred CCCcceEECCCCcEEEEec--cccceEEcccccCCcceecCCCcccccccccccCcc---C----cEEEeccCCceeeEe
Confidence 3345678888888877653 4556778899999888888877632 1112233332 1 122222 5688999
Q ss_pred EcCCCceeeeccCCCceeeeccCcccceeEECc-eEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC
Q 016751 187 SLRSNSWKNIAYGFPRSIEINRSHINSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS 259 (383)
Q Consensus 187 ss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G-~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~ 259 (383)
+..+.+|++-. +|..-. +.. +++++. -.-|+..-. ...|..||+.+++|.++++| ...
T Consensus 260 dPs~~sW~eyp--LPgs~a--rpy---s~rVD~~grVW~sea~-------agai~rfdpeta~ftv~p~p-r~n 318 (353)
T COG4257 260 DPSVTSWIEYP--LPGSKA--RPY---SMRVDRHGRVWLSEAD-------AGAIGRFDPETARFTVLPIP-RPN 318 (353)
T ss_pred Ccccccceeee--CCCCCC--Ccc---eeeeccCCcEEeeccc-------cCceeecCcccceEEEecCC-CCC
Confidence 99999999776 332211 111 344442 233554332 46899999999999999888 544
No 54
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=92.61 E-value=0.94 Score=28.36 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=33.7
Q ss_pred ceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 016751 264 DKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 309 (383)
Q Consensus 264 ~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 309 (383)
...+++.+++|+++++........-.+|.++-. ++.|..+..|+
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE--TNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETT--TTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCC--CCEEEEcCCCC
Confidence 467889999999999887644456677888753 47899988775
No 55
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.49 E-value=10 Score=36.23 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=78.6
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDL 258 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~ 258 (383)
...+.+|......=..+. ++.......++. ..+-+|. .-+.++.+ ..+++||+.+.+.+.+..| ..
T Consensus 234 d~~lrifqvDGk~N~~lq-S~~l~~fPi~~a---~f~p~G~~~i~~s~rr--------ky~ysyDle~ak~~k~~~~-~g 300 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQ-SIHLEKFPIQKA---EFAPNGHSVIFTSGRR--------KYLYSYDLETAKVTKLKPP-YG 300 (514)
T ss_pred CCcEEEEEecCccChhhe-eeeeccCcccee---eecCCCceEEEecccc--------eEEEEeeccccccccccCC-CC
Confidence 557777777543222333 333332222322 4555676 44444444 5899999999999999888 66
Q ss_pred CCCCCceEEEEeC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCce
Q 016751 259 STDDADKYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGY 337 (383)
Q Consensus 259 ~~~~~~~~l~~~~-g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 337 (383)
..........+.. +...++.+.. ..+.+--.+ .++|.--..|+- ...-+.+..+|+.++. +..++
T Consensus 301 ~e~~~~e~FeVShd~~fia~~G~~----G~I~lLhak----T~eli~s~KieG---~v~~~~fsSdsk~l~~--~~~~G- 366 (514)
T KOG2055|consen 301 VEEKSMERFEVSHDSNFIAIAGNN----GHIHLLHAK----TKELITSFKIEG---VVSDFTFSSDSKELLA--SGGTG- 366 (514)
T ss_pred cccchhheeEecCCCCeEEEcccC----ceEEeehhh----hhhhhheeeecc---EEeeEEEecCCcEEEE--EcCCc-
Confidence 6533222333333 3322222222 234333322 244555444443 2445566667765555 42455
Q ss_pred EEEEEeCCCCeEE
Q 016751 338 GLLVYNPHSDTFK 350 (383)
Q Consensus 338 ~~~~yd~~t~~~~ 350 (383)
.|+++|++++...
T Consensus 367 eV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 367 EVYVWNLRQNSCL 379 (514)
T ss_pred eEEEEecCCcceE
Confidence 4999999998644
No 56
>smart00612 Kelch Kelch domain.
Probab=92.40 E-value=0.41 Score=29.74 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=23.2
Q ss_pred EEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCC
Q 016751 221 VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLS 259 (383)
Q Consensus 221 lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~ 259 (383)
+|.+++.. +......+..||+.+++|+.+ ++| ..+
T Consensus 2 iyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~~~-~~r 37 (47)
T smart00612 2 IYVVGGFD---GGQRLKSVEVYDPETNKWTPLPSMP-TPR 37 (47)
T ss_pred EEEEeCCC---CCceeeeEEEECCCCCeEccCCCCC-Ccc
Confidence 55555532 122346789999999999887 666 444
No 57
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=92.14 E-value=7.8 Score=34.08 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=83.7
Q ss_pred CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCC--------
Q 016751 191 NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTD-------- 261 (383)
Q Consensus 191 ~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~-------- 261 (383)
+.|...- .+|....... -|+.+|.+|...... ..|+.||+.++.- ....+| .....
T Consensus 56 ~~~~~~~-~lp~~~~gTg-----~VVynGs~yynk~~t--------~~ivky~l~~~~~~~~~~lp-~a~y~~~~~y~~~ 120 (249)
T KOG3545|consen 56 GRKAEKY-RLPYSWDGTG-----HVVYNGSLYYNKAGT--------RNIIKYDLETRTVAGSAALP-YAGYHNPSPYYWG 120 (249)
T ss_pred cCcceEE-eCCCCccccc-----eEEEcceEEeeccCC--------cceEEEEeecceeeeeeecc-ccccCCCcccccC
Confidence 4555544 5665554332 699999999976544 6899999998544 333666 33311
Q ss_pred -CCceEEEEeCCeEEEEEecCCCCccEEEEEEeccC--CCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC-Cce
Q 016751 262 -DADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEY--GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH-GGY 337 (383)
Q Consensus 262 -~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~ 337 (383)
.....+++.+..|.++....+ +...+.|-.|+.. .....|.- .++.... - -++...|.+|.+..... ...
T Consensus 121 g~sdiD~avDE~GLWviYat~~-~~g~iv~skLdp~tl~~e~tW~T--~~~k~~~-~--~aF~iCGvLY~v~S~~~~~~~ 194 (249)
T KOG3545|consen 121 GHSDIDLAVDENGLWVIYATPE-NAGTIVLSKLDPETLEVERTWNT--TLPKRSA-G--NAFMICGVLYVVHSYNCTHTQ 194 (249)
T ss_pred CCccccceecccceeEEecccc-cCCcEEeeccCHHHhheeeeecc--ccCCCCc-C--ceEEEeeeeEEEeccccCCce
Confidence 145678888888988876654 2355667777753 12344533 1222110 0 12333466777621111 111
Q ss_pred EEEEEeCCCCeEEEEEEe
Q 016751 338 GLLVYNPHSDTFKCIGVH 355 (383)
Q Consensus 338 ~~~~yd~~t~~~~~v~~~ 355 (383)
.-++||..+++-+.+.+.
T Consensus 195 i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 195 ISYAYDTTTGTQERIDLP 212 (249)
T ss_pred EEEEEEcCCCceeccccc
Confidence 237999999988777643
No 58
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.13 E-value=3.4 Score=36.14 Aligned_cols=124 Identities=11% Similarity=0.127 Sum_probs=66.3
Q ss_pred EECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC---CCCCceEEEEe--CC--eEEEEEec-CCCCccE
Q 016751 216 FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS---TDDADKYLNVF--DG--YLCVFATI-PNNTFRS 287 (383)
Q Consensus 216 ~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~---~~~~~~~l~~~--~g--~L~~v~~~-~~~~~~~ 287 (383)
.+||.+. +... ..+...|+.|++|..++.| ... .......++-. .+ ++..+... .......
T Consensus 3 sCnGLlc-~~~~---------~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~ 71 (230)
T TIGR01640 3 PCDGLIC-FSYG---------KRLVVWNPSTGQSRWLPTP-KSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSE 71 (230)
T ss_pred ccceEEE-EecC---------CcEEEECCCCCCEEecCCC-CCcccccccceEEEeecccCCcEEEEEEEeecCCCCCcc
Confidence 4688883 3322 3799999999999998765 431 11011223321 12 22222211 1111245
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC-Cce-EEEEEeCCCCeEEE-EEEe
Q 016751 288 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH-GGY-GLLVYNPHSDTFKC-IGVH 355 (383)
Q Consensus 288 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~-~~~~yd~~t~~~~~-v~~~ 355 (383)
++|..+.. ++|..+...+........ ++.-+|.++....... ... .++.||++++++++ +...
T Consensus 72 ~~Vys~~~----~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 72 HQVYTLGS----NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEEEEeCC----CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 66666654 479987633221111222 5556788887722211 111 59999999999995 6543
No 59
>PLN02772 guanylate kinase
Probab=91.83 E-value=1.1 Score=42.56 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=53.3
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe----CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYE 289 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i----~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~ 289 (383)
++.++.++|..++.. .++.....+.+||..+.+|... ..| ..+. .+..+..-+++|.++..... ..-+
T Consensus 30 av~igdk~yv~GG~~--d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-~~r~--GhSa~v~~~~rilv~~~~~~---~~~~ 101 (398)
T PLN02772 30 SVTIGDKTYVIGGNH--EGNTLSIGVQILDKITNNWVSPIVLGTGP-KPCK--GYSAVVLNKDRILVIKKGSA---PDDS 101 (398)
T ss_pred eEEECCEEEEEcccC--CCccccceEEEEECCCCcEecccccCCCC-CCCC--cceEEEECCceEEEEeCCCC---Cccc
Confidence 899999999999865 1122456899999999999775 344 4443 23444455789998876655 4678
Q ss_pred EEEeccC
Q 016751 290 LWVMKEY 296 (383)
Q Consensus 290 iW~l~~~ 296 (383)
||.|+-+
T Consensus 102 ~w~l~~~ 108 (398)
T PLN02772 102 IWFLEVD 108 (398)
T ss_pred eEEEEcC
Confidence 9999753
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.74 E-value=5.1 Score=37.61 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=60.9
Q ss_pred EEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCcc------EEEEEEecc------CCCCCCeEEE
Q 016751 238 LIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFR------SYELWVMKE------YGLTESWTKL 305 (383)
Q Consensus 238 ~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~------~l~iW~l~~------~~~~~~W~~~ 305 (383)
.++.||..+..... +| ...........+..+|+||+.......... .+++-.... ......|..
T Consensus 87 ~t~vyDt~t~av~~--~P-~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVAT--GP-RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred CeEEEECCCCeEec--cC-CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 68999999887774 44 322222334445558889999876432111 556554431 122345555
Q ss_pred EEecCCCc---e------eEEEEEeeCCcEEEEEEeeCCc-eEEEEEeCCCCeEEEE
Q 016751 306 YTIEKPQR---I------WWPLGFTERGKIFIRGECRHGG-YGLLVYNPHSDTFKCI 352 (383)
Q Consensus 306 ~~i~~~~~---~------~~~~~~~~~g~i~~~~~~~~~~-~~~~~yd~~t~~~~~v 352 (383)
+|.+.+ . +...++.++..|++. . .+. ...++||.++.+|+++
T Consensus 163 --LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS--~-~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 163 --LPPPPFVRDRRYSDYRITSYAVVDGRTIFVS--V-NGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred --CCCCCccccCCcccceEEEEEEecCCeEEEE--e-cCCceEEEEEEcCCcceeec
Confidence 443332 1 333444423367775 3 332 1289999999999998
No 61
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=90.75 E-value=0.53 Score=30.03 Aligned_cols=43 Identities=30% Similarity=0.537 Sum_probs=31.4
Q ss_pred ceEEEEeCCeEEEEEec--CCCCccEEEEEEeccCCCCCCeEEEEEe
Q 016751 264 DKYLNVFDGYLCVFATI--PNNTFRSYELWVMKEYGLTESWTKLYTI 308 (383)
Q Consensus 264 ~~~l~~~~g~L~~v~~~--~~~~~~~l~iW~l~~~~~~~~W~~~~~i 308 (383)
....++.+++|+++++. +.......++|+++.. +.+|+++..+
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~--t~~W~~~~~~ 48 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE--TNQWTELSPM 48 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECC--CCEEeecCCC
Confidence 45677889999999988 3334456688999863 5789986544
No 62
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=90.57 E-value=2.3 Score=33.62 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=52.5
Q ss_pred EEEEEECCCC--eeeEeCCCCCCCCC-----------CCceEEEEeCCeEEEEEecCC------CCccEEEEEEeccC-C
Q 016751 238 LIVSFDFAKE--IFQTVMMPYDLSTD-----------DADKYLNVFDGYLCVFATIPN------NTFRSYELWVMKEY-G 297 (383)
Q Consensus 238 ~il~fD~~~~--~~~~i~lP~~~~~~-----------~~~~~l~~~~g~L~~v~~~~~------~~~~~l~iW~l~~~-~ 297 (383)
+|+..|+..+ .++-++|| ..... .....+++.+|+|-+|..... .....+.+|.+... .
T Consensus 7 GIL~CD~~~~~p~l~~vpLP-~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLP-PPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CEEEEECCCCCccEEEEeCC-CccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 6888888765 66777888 54421 133467888999988876543 13567999999874 2
Q ss_pred CCCCeEEEEEecCCC
Q 016751 298 LTESWTKLYTIEKPQ 312 (383)
Q Consensus 298 ~~~~W~~~~~i~~~~ 312 (383)
....|.+-++++...
T Consensus 86 ~~~~W~~d~~v~~~d 100 (131)
T PF07762_consen 86 SSWEWKKDCEVDLSD 100 (131)
T ss_pred CCCCEEEeEEEEhhh
Confidence 357899999888765
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.08 E-value=12 Score=32.65 Aligned_cols=188 Identities=12% Similarity=0.169 Sum_probs=100.9
Q ss_pred EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC---
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN--- 191 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~--- 191 (383)
.--.+|--|+..+ .+..+-+|||..+..+.-=...-..-. .+..+|.+ |+..-.....+++++.+|+
T Consensus 24 ryN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns-------kf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 24 RYNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS-------KFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred EEccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeecccccccc-------ccccCCCCceEEEEEcccCeee
Confidence 4456677777775 677888999988765532111110000 33333332 1111111457888999885
Q ss_pred -ceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe
Q 016751 192 -SWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 192 -~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~ 270 (383)
.||.....+..- .+-..+ +|.+.|.+ ...+-++|-.+..+.+++.= +...+ ...-...
T Consensus 95 Rr~rgH~aqVNtV-~fNees---SVv~Sgsf--------------D~s~r~wDCRS~s~ePiQil-dea~D--~V~Si~v 153 (307)
T KOG0316|consen 95 RRFRGHLAQVNTV-RFNEES---SVVASGSF--------------DSSVRLWDCRSRSFEPIQIL-DEAKD--GVSSIDV 153 (307)
T ss_pred eecccccceeeEE-EecCcc---eEEEeccc--------------cceeEEEEcccCCCCccchh-hhhcC--ceeEEEe
Confidence 677655222222 222322 56666544 24899999999999988554 43332 1222344
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc--eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
.++..+.+..++ +++.+-+... ++....+ -...+.+..+|+..+. .--+. .+-..|-+|++
T Consensus 154 ~~heIvaGS~DG----tvRtydiR~G----------~l~sDy~g~pit~vs~s~d~nc~La--~~l~s-tlrLlDk~tGk 216 (307)
T KOG0316|consen 154 AEHEIVAGSVDG----TVRTYDIRKG----------TLSSDYFGHPITSVSFSKDGNCSLA--SSLDS-TLRLLDKETGK 216 (307)
T ss_pred cccEEEeeccCC----cEEEEEeecc----------eeehhhcCCcceeEEecCCCCEEEE--eeccc-eeeecccchhH
Confidence 566666665554 5555544431 1111111 1445666777776666 31233 37777777776
Q ss_pred EE
Q 016751 349 FK 350 (383)
Q Consensus 349 ~~ 350 (383)
+-
T Consensus 217 lL 218 (307)
T KOG0316|consen 217 LL 218 (307)
T ss_pred HH
Confidence 53
No 64
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.41 E-value=24 Score=33.71 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=94.1
Q ss_pred cCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC--ceeee
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN--SWKNI 196 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~--~W~~~ 196 (383)
.+|.|.+.. ..+.++.+|+.|++.+.--+.+... . -.|.. .++ +|+.......+.-++..++ .|+.-
T Consensus 119 ~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~-~----ssP~v--~~~-~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 119 AGGKVYIGS---EKGQVYALNAEDGEVAWQTKVAGEA-L----SRPVV--SDG-LVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred ECCEEEEEc---CCCEEEEEECCCCCCcccccCCCce-e----cCCEE--ECC-EEEEECCCCEEEEEEccCCCEeeeec
Confidence 466666654 4678888999987743321111110 0 00100 011 2222222446788888776 58865
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeE-eCCCCCCCCC-----CCceEEE
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQT-VMMPYDLSTD-----DADKYLN 268 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~-i~lP~~~~~~-----~~~~~l~ 268 (383)
. ..|........+ ++..+|.+|+....+ .+.++|..+. .|+. +..| ..... ......+
T Consensus 188 ~-~~~~~~~~~~~s---P~v~~~~v~~~~~~g---------~v~a~d~~~G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 188 L-DVPSLTLRGESA---PATAFGGAIVGGDNG---------RVSAVLMEQGQLIWQQRISQP-TGATEIDRLVDVDTTPV 253 (394)
T ss_pred C-CCCcccccCCCC---CEEECCEEEEEcCCC---------EEEEEEccCChhhheeccccC-CCccchhcccccCCCcE
Confidence 4 322111111122 677889888865544 7999998765 4653 2223 21100 0011223
Q ss_pred EeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 269 VFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 269 ~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
..+|.|++.... + .+ ..++-...+..|.... ... ..+ . ..++.||+. . .++ .++++|.++++
T Consensus 254 v~~~~vy~~~~~-g----~l--~ald~~tG~~~W~~~~--~~~---~~~-~-~~~~~vy~~--~-~~g-~l~ald~~tG~ 315 (394)
T PRK11138 254 VVGGVVYALAYN-G----NL--VALDLRSGQIVWKREY--GSV---NDF-A-VDGGRIYLV--D-QND-RVYALDTRGGV 315 (394)
T ss_pred EECCEEEEEEcC-C----eE--EEEECCCCCEEEeecC--CCc---cCc-E-EECCEEEEE--c-CCC-eEEEEECCCCc
Confidence 457777766532 1 22 3333222234576531 111 111 2 245678887 5 555 49999999876
Q ss_pred E
Q 016751 349 F 349 (383)
Q Consensus 349 ~ 349 (383)
.
T Consensus 316 ~ 316 (394)
T PRK11138 316 E 316 (394)
T ss_pred E
Confidence 3
No 65
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=88.36 E-value=1.8 Score=27.54 Aligned_cols=40 Identities=8% Similarity=0.113 Sum_probs=26.4
Q ss_pred CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCC
Q 016751 218 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLS 259 (383)
Q Consensus 218 ~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~ 259 (383)
++.+|..++... ........+.+||+.+.+|+.+ .+| ..+
T Consensus 1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~~~~P-~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRIGDLP-PPR 41 (49)
T ss_pred CCEEEEECCcCC-CCCCEecCEEEEECCCCEEEECCCCC-CCc
Confidence 356666665431 1123346889999999999998 666 544
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.36 E-value=26 Score=33.06 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=59.3
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW 291 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW 291 (383)
++..+|.+|.....+ .+.+||..+. .|.. +.+ . ....+..+|+|++.... ..+..+
T Consensus 237 p~~~~~~vy~~~~~g---------~l~a~d~~tG~~~W~~-~~~-~------~~~p~~~~~~vyv~~~~-----G~l~~~ 294 (377)
T TIGR03300 237 PVVDGGQVYAVSYQG---------RVAALDLRSGRVLWKR-DAS-S------YQGPAVDDNRLYVTDAD-----GVVVAL 294 (377)
T ss_pred cEEECCEEEEEEcCC---------EEEEEECCCCcEEEee-ccC-C------ccCceEeCCEEEEECCC-----CeEEEE
Confidence 677899999877655 8999998754 4543 222 1 11233456666665421 234333
Q ss_pred EeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE-EEEEec
Q 016751 292 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK-CIGVHL 356 (383)
Q Consensus 292 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~-~v~~~~ 356 (383)
..+. .+..|... .+.... ...|+. .++.||+. . .++ .++++|.++++.. ++.+.+
T Consensus 295 d~~t--G~~~W~~~-~~~~~~-~ssp~i--~g~~l~~~--~-~~G-~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 295 DRRS--GSELWKND-ELKYRQ-LTAPAV--VGGYLVVG--D-FEG-YLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ECCC--CcEEEccc-cccCCc-cccCEE--ECCEEEEE--e-CCC-EEEEEECCCCCEEEEEEcCC
Confidence 3332 12345542 111111 122222 34567776 5 555 4999999988764 344433
No 67
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=85.61 E-value=1.3 Score=28.00 Aligned_cols=22 Identities=9% Similarity=0.239 Sum_probs=14.3
Q ss_pred CceEEEEccCccceeecCCCCC
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSL 153 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~ 153 (383)
...++++|+.+++|.++|++|.
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp ---EEEEETTTTEEEE--SS--
T ss_pred cCCEEEEECCCCEEEECCCCCC
Confidence 4478999999999999988763
No 68
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=85.24 E-value=36 Score=32.60 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=39.1
Q ss_pred CceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEE
Q 016751 263 ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 263 ~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~ 329 (383)
+...|+++.|.=.++.+... ..+++|...+. -..-...+.+++.. ++..+++..+|.-+++
T Consensus 382 Witsla~i~~sdL~asGS~~---G~vrLW~i~~g--~r~i~~l~~ls~~G-fVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWS---GCVRLWKIEDG--LRAINLLYSLSLVG-FVNSLAFSNSGKRIVA 442 (479)
T ss_pred ceeeeEecccCceEEecCCC---CceEEEEecCC--ccccceeeeccccc-EEEEEEEccCCCEEEE
Confidence 34567777764444444433 59999999973 23456667777655 5666777778875555
No 69
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.14 E-value=0.66 Score=44.60 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=62.0
Q ss_pred ceeeecc---CCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe----CCCCCCCCCCCc
Q 016751 192 SWKNIAY---GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDAD 264 (383)
Q Consensus 192 ~W~~~~~---~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i----~lP~~~~~~~~~ 264 (383)
.||.+.. ..|.+++.++ +|.+.-.+-.+++.+ ..-.+.+.+||..+++|..- .+| ..+.
T Consensus 18 rWrrV~~~tGPvPrpRHGHR-----AVaikELiviFGGGN----EGiiDELHvYNTatnqWf~PavrGDiP-pgcA---- 83 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHR-----AVAIKELIVIFGGGN----EGIIDELHVYNTATNQWFAPAVRGDIP-PGCA---- 83 (830)
T ss_pred ceEEEecccCCCCCccccch-----heeeeeeEEEecCCc----ccchhhhhhhccccceeecchhcCCCC-Cchh----
Confidence 6887762 4455565555 788888777766654 33346789999999999764 455 4441
Q ss_pred eEEEEeC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEE
Q 016751 265 KYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLY 306 (383)
Q Consensus 265 ~~l~~~~-g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 306 (383)
.+-.+++ .+|+++++.-+.+-...++++|+.. ..+|.++.
T Consensus 84 A~GfvcdGtrilvFGGMvEYGkYsNdLYELQas--RWeWkrlk 124 (830)
T KOG4152|consen 84 AFGFVCDGTRILVFGGMVEYGKYSNDLYELQAS--RWEWKRLK 124 (830)
T ss_pred hcceEecCceEEEEccEeeeccccchHHHhhhh--hhhHhhcC
Confidence 2233444 5888887654333355667777753 35666643
No 70
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=85.00 E-value=1.7 Score=41.93 Aligned_cols=136 Identities=14% Similarity=0.056 Sum_probs=79.4
Q ss_pred EEEccCccceeecCCCCCCC----------CceeEEEeccCCCCCCeEEEEEEe----cCeEEEEEcCCCceeeecc--C
Q 016751 136 YLWNPLIKKYMTLPRPSLNP----------RYLGFGVNSVSGHLDDFKVVTISV----NADAEVYSLRSNSWKNIAY--G 199 (383)
Q Consensus 136 ~v~NP~t~~~~~LP~~~~~~----------~~~~~g~d~~~~~~~~ykVv~~~~----~~~~~vyss~t~~W~~~~~--~ 199 (383)
..-.|.+-.|.++|+..... ...-+++++. +.--.+..... ...+++|+-+.+.|..+.. .
T Consensus 232 i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~---~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~ 308 (723)
T KOG2437|consen 232 ISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ---TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTE 308 (723)
T ss_pred hhcccccccccccCchhhcccccccCccccCcceEEEeCC---CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCC
Confidence 33456677777777655321 1134455543 32222222222 4577999999999998763 3
Q ss_pred CCceeeeccCcccceeEE--CceEEEEEeeccC---CCCCCCcEEEEEECCCCeeeEeCCCCCCCCCC----CceEEEEe
Q 016751 200 FPRSIEINRSHINSSVFL--NGSVHWCARFSCY---HDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDD----ADKYLNVF 270 (383)
Q Consensus 200 ~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~---~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~----~~~~l~~~ 270 (383)
.|..+..++ .|.- .-+||-++..-.. ...+....+..||..+++|..+..- ...+.+ +...+++.
T Consensus 309 ~PG~RsCHR-----MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d-t~~dGGP~~vfDHqM~Vd 382 (723)
T KOG2437|consen 309 GPGARSCHR-----MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED-TAADGGPKLVFDHQMCVD 382 (723)
T ss_pred CCcchhhhh-----hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc-ccccCCcceeecceeeEe
Confidence 465555544 2322 2377777654211 1234557899999999999999665 443222 45566666
Q ss_pred CCe--EEEEEec
Q 016751 271 DGY--LCVFATI 280 (383)
Q Consensus 271 ~g~--L~~v~~~ 280 (383)
+.+ ||+.++.
T Consensus 383 ~~k~~iyVfGGr 394 (723)
T KOG2437|consen 383 SEKHMIYVFGGR 394 (723)
T ss_pred cCcceEEEecCe
Confidence 654 7887764
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=83.18 E-value=31 Score=30.27 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=67.6
Q ss_pred eeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEE--eCCeEEEEEecCCCCccEEE
Q 016751 214 SVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV--FDGYLCVFATIPNNTFRSYE 289 (383)
Q Consensus 214 ~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g~L~~v~~~~~~~~~~l~ 289 (383)
+++. +|.|||..... ..|..+|+.+.....+.+| .. .-++. -+|+|++..... +.
T Consensus 5 p~~d~~~g~l~~~D~~~--------~~i~~~~~~~~~~~~~~~~-~~------~G~~~~~~~g~l~v~~~~~------~~ 63 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG--------GRIYRVDPDTGEVEVIDLP-GP------NGMAFDRPDGRLYVADSGG------IA 63 (246)
T ss_dssp EEEETTTTEEEEEETTT--------TEEEEEETTTTEEEEEESS-SE------EEEEEECTTSEEEEEETTC------EE
T ss_pred eEEECCCCEEEEEEcCC--------CEEEEEECCCCeEEEEecC-CC------ceEEEEccCCEEEEEEcCc------eE
Confidence 4555 69999987655 6999999999999888877 41 22233 357777765422 22
Q ss_pred EEEeccCCCCCCeEEEEEecCC--Cc-eeEEEEEeeCCcEEEEEEeeCC--------ceEEEEEeCCCCeEEEE
Q 016751 290 LWVMKEYGLTESWTKLYTIEKP--QR-IWWPLGFTERGKIFIRGECRHG--------GYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 290 iW~l~~~~~~~~W~~~~~i~~~--~~-~~~~~~~~~~g~i~~~~~~~~~--------~~~~~~yd~~t~~~~~v 352 (383)
+. +. ...+++.....+.. .. ...-+++..+|.+|+. .... + .++.++++ ++.+.+
T Consensus 64 ~~--d~--~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t--~~~~~~~~~~~~g-~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 64 VV--DP--DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVT--DSGGGGASGIDPG-SVYRIDPD-GKVTVV 129 (246)
T ss_dssp EE--ET--TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEE--EECCBCTTCGGSE-EEEEEETT-SEEEEE
T ss_pred EE--ec--CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEE--ecCCCcccccccc-ceEEECCC-CeEEEE
Confidence 22 21 23567777776422 11 3444667778888887 3111 3 48999999 666555
No 72
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.07 E-value=28 Score=31.79 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=51.8
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCCCCceEEEEeCCeE---EEEEecCCCCccEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYL---CVFATIPNNTFRSYE 289 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L---~~v~~~~~~~~~~l~ 289 (383)
+|.++|-.-.-+. ..+.|..||+.+..= ..+.-| ... .......+-+ .++.+.++ ..+.
T Consensus 48 avAVs~~~~aSGs--------sDetI~IYDm~k~~qlg~ll~H-ags-----itaL~F~~~~S~shLlS~sdD---G~i~ 110 (362)
T KOG0294|consen 48 ALAVSGPYVASGS--------SDETIHIYDMRKRKQLGILLSH-AGS-----ITALKFYPPLSKSHLLSGSDD---GHII 110 (362)
T ss_pred EEEecceeEeccC--------CCCcEEEEeccchhhhcceecc-ccc-----eEEEEecCCcchhheeeecCC---CcEE
Confidence 7888885433332 357999999976543 333323 111 1111112222 44555554 6889
Q ss_pred EEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEE
Q 016751 290 LWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 290 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~ 329 (383)
||..+. |..++.+....-...-+.++..|++-+.
T Consensus 111 iw~~~~------W~~~~slK~H~~~Vt~lsiHPS~KLALs 144 (362)
T KOG0294|consen 111 IWRVGS------WELLKSLKAHKGQVTDLSIHPSGKLALS 144 (362)
T ss_pred EEEcCC------eEEeeeecccccccceeEecCCCceEEE
Confidence 998765 8888887654322444556666666555
No 73
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=82.64 E-value=41 Score=31.20 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=81.2
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEe----CC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MM 254 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i----~l 254 (383)
...+.+|+..++.=.... ..-.....+.... ...-||+ .|.++.-. +.-.++.||....++..+ .+
T Consensus 166 ~Dri~~y~~~dg~L~~~~-~~~v~~G~GPRHi--~FHpn~k~aY~v~EL~------stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 166 TDRIFLYDLDDGKLTPAD-PAEVKPGAGPRHI--VFHPNGKYAYLVNELN------STVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred CceEEEEEcccCcccccc-ccccCCCCCcceE--EEcCCCcEEEEEeccC------CEEEEEEEcCCCceEEEeeeeccC
Confidence 779999999987655444 1111111111110 2233454 46665544 223445555555788766 56
Q ss_pred CCCCCCCC-CceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEe
Q 016751 255 PYDLSTDD-ADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGEC 332 (383)
Q Consensus 255 P~~~~~~~-~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~ 332 (383)
| ..-... ....+-.. +|+...+..... ..+.+..++..+ +.=..+...+......+-+.+..+|+++++ .
T Consensus 237 P-~dF~g~~~~aaIhis~dGrFLYasNRg~---dsI~~f~V~~~~--g~L~~~~~~~teg~~PR~F~i~~~g~~Lia--a 308 (346)
T COG2706 237 P-EDFTGTNWAAAIHISPDGRFLYASNRGH---DSIAVFSVDPDG--GKLELVGITPTEGQFPRDFNINPSGRFLIA--A 308 (346)
T ss_pred c-cccCCCCceeEEEECCCCCEEEEecCCC---CeEEEEEEcCCC--CEEEEEEEeccCCcCCccceeCCCCCEEEE--E
Confidence 6 444332 23333333 455544444333 345555555433 333344444433323455667777777766 4
Q ss_pred eCCce--EEEEEeCCCCeEEEEE
Q 016751 333 RHGGY--GLLVYNPHSDTFKCIG 353 (383)
Q Consensus 333 ~~~~~--~~~~yd~~t~~~~~v~ 353 (383)
..+.. .++.-|.+|+++..+.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 309 NQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred ccCCCcEEEEEEcCCCceEEecc
Confidence 23322 5777799999998874
No 74
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=82.12 E-value=32 Score=32.01 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=64.5
Q ss_pred CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC-----CCC---CceEEEEe---CCeEEEEEecCCC---
Q 016751 218 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-----TDD---ADKYLNVF---DGYLCVFATIPNN--- 283 (383)
Q Consensus 218 ~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~-----~~~---~~~~l~~~---~g~L~~v~~~~~~--- 283 (383)
+|.+||....+ .|...|++.+.-.... |+... .+. ....+..+ .|+||+.......
T Consensus 195 ~~~~~F~Sy~G---------~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 195 GGRLYFVSYEG---------NVYSADLSGDSAKFGK-PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp TTEEEEEBTTS---------EEEEEEETTSSEEEEE-EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred CCeEEEEecCC---------EEEEEeccCCcccccC-cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 36788887766 8999998877533321 11111 011 11222322 4799887643321
Q ss_pred CccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc--EEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 284 TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK--IFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 284 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~--i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
....-+||+++-. .=.++.++++.. ....+++..+.+ +|-. ...++ .+++||..|++...
T Consensus 265 KdpgteVWv~D~~----t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~--~~~~~-~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 265 KDPGTEVWVYDLK----THKRVARIPLEH-PIDSIAVSQDDKPLLYAL--SAGDG-TLDVYDAATGKLVR 326 (342)
T ss_dssp TS-EEEEEEEETT----TTEEEEEEEEEE-EESEEEEESSSS-EEEEE--ETTTT-EEEEEETTT--EEE
T ss_pred cCCceEEEEEECC----CCeEEEEEeCCC-ccceEEEccCCCcEEEEE--cCCCC-eEEEEeCcCCcEEe
Confidence 2456799999862 226677777653 233567776664 4444 32334 59999999997654
No 75
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=82.03 E-value=45 Score=31.22 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=87.5
Q ss_pred eeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc--eeeec-cCCCceeeeccCcccceeEECc-eEEEEEeeccCCCC
Q 016751 158 LGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS--WKNIA-YGFPRSIEINRSHINSSVFLNG-SVHWCARFSCYHDN 233 (383)
Q Consensus 158 ~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~--W~~~~-~~~p~~~~~~~~~~~~~v~~~G-~lYw~~~~~~~~~~ 233 (383)
..+.++|. +.|-++.-.....+.+|+...+. ..... ..+|.+..... . .+.-+| .+|......
T Consensus 147 H~v~~~pd----g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh-~---~f~pdg~~~Yv~~e~s----- 213 (345)
T PF10282_consen 147 HQVVFSPD----GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH-L---AFSPDGKYAYVVNELS----- 213 (345)
T ss_dssp EEEEE-TT----SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE-E---EE-TTSSEEEEEETTT-----
T ss_pred eeEEECCC----CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE-E---EEcCCcCEEEEecCCC-----
Confidence 55666664 33333322126789999997765 53322 01221111000 0 222255 566665544
Q ss_pred CCCcEEEEEECC--CCeeeEe----CCCCCCCCCC-CceEEEEe-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEE
Q 016751 234 SCPWLIVSFDFA--KEIFQTV----MMPYDLSTDD-ADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTK 304 (383)
Q Consensus 234 ~~~~~il~fD~~--~~~~~~i----~lP~~~~~~~-~~~~l~~~-~g~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~ 304 (383)
..|.+|+.. +..++.+ .+| ...... ....+... +|+ ||+..... ..+.++.++.. .+.-+.
T Consensus 214 ---~~v~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~i~ispdg~~lyvsnr~~----~sI~vf~~d~~--~g~l~~ 283 (345)
T PF10282_consen 214 ---NTVSVFDYDPSDGSLTEIQTISTLP-EGFTGENAPAEIAISPDGRFLYVSNRGS----NSISVFDLDPA--TGTLTL 283 (345)
T ss_dssp ---TEEEEEEEETTTTEEEEEEEEESCE-TTSCSSSSEEEEEE-TTSSEEEEEECTT----TEEEEEEECTT--TTTEEE
T ss_pred ---CcEEEEeecccCCceeEEEEeeecc-ccccccCCceeEEEecCCCEEEEEeccC----CEEEEEEEecC--CCceEE
Confidence 577777776 6666554 455 322221 23445555 355 45544443 58888888653 244566
Q ss_pred EEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEE--eCCCCeEEEEE
Q 016751 305 LYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVY--NPHSDTFKCIG 353 (383)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~y--d~~t~~~~~v~ 353 (383)
+..++......+-+.+..+|+.+++ .......+.+| |.+|++++.+.
T Consensus 284 ~~~~~~~G~~Pr~~~~s~~g~~l~V--a~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 284 VQTVPTGGKFPRHFAFSPDGRYLYV--ANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEESSSSEEEEEE-TTSSEEEE--EETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEE--EecCCCeEEEEEEeCCCCcEEEec
Confidence 6666653323555666778876555 31232235555 77899998874
No 76
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.50 E-value=34 Score=29.54 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=72.1
Q ss_pred eEEEEEcCCC--ceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe--eeEeCCCCC
Q 016751 182 DAEVYSLRSN--SWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTVMMPYD 257 (383)
Q Consensus 182 ~~~vyss~t~--~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~--~~~i~lP~~ 257 (383)
.+..++..++ -|+.-- .......... .+.-+|.+|..... ..+.++|..+.+ |+. .++ .
T Consensus 4 ~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-----~~~~~~~v~~~~~~---------~~l~~~d~~tG~~~W~~-~~~-~ 66 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL-GPGIGGPVAT-----AVPDGGRVYVASGD---------GNLYALDAKTGKVLWRF-DLP-G 66 (238)
T ss_dssp EEEEEETTTTEEEEEEEC-SSSCSSEEET-----EEEETTEEEEEETT---------SEEEEEETTTSEEEEEE-ECS-S
T ss_pred EEEEEECCCCCEEEEEEC-CCCCCCccce-----EEEeCCEEEEEcCC---------CEEEEEECCCCCEEEEe-ecc-c
Confidence 4667777665 587633 1111111100 34578888887544 489999986554 433 335 3
Q ss_pred CCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEE-EEEecCCCceeEEEEEeeCCcEEEEEEeeCCc
Q 016751 258 LSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTK-LYTIEKPQRIWWPLGFTERGKIFIRGECRHGG 336 (383)
Q Consensus 258 ~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 336 (383)
... ......++++++... . . .++.++....+..|.. ...-+.............++.+++. . ..+
T Consensus 67 ~~~----~~~~~~~~~v~v~~~--~---~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g 132 (238)
T PF13360_consen 67 PIS----GAPVVDGGRVYVGTS--D---G--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG--T-SSG 132 (238)
T ss_dssp CGG----SGEEEETTEEEEEET--T---S--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE--E-TCS
T ss_pred ccc----ceeeecccccccccc--e---e--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEE--e-ccC
Confidence 321 114667788877762 1 2 4555552223457874 3332222111111112224456665 4 455
Q ss_pred eEEEEEeCCCCeEEE
Q 016751 337 YGLLVYNPHSDTFKC 351 (383)
Q Consensus 337 ~~~~~yd~~t~~~~~ 351 (383)
.++++|++|++...
T Consensus 133 -~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 133 -KLVALDPKTGKLLW 146 (238)
T ss_dssp -EEEEEETTTTEEEE
T ss_pred -cEEEEecCCCcEEE
Confidence 49999999998643
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=81.34 E-value=1 Score=42.46 Aligned_cols=36 Identities=31% Similarity=0.655 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCC
Q 016751 24 FRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTS 59 (383)
Q Consensus 24 ~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s 59 (383)
-.||.|++..||+-|-.+++.|++.+|+.|+-+.-+
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 469999999999999999999999999999998765
No 78
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=80.99 E-value=52 Score=31.27 Aligned_cols=218 Identities=12% Similarity=0.085 Sum_probs=86.5
Q ss_pred ccCc-eEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 118 SCNG-VLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 118 s~~G-ll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
..+| .|++....++..++|+.|-.|++-.+|-..+....+ +....+. +=.++.+.....+...+++|.+=+.+
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~-----~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPD-----DRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TT-----SSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecC-----CCeEEEEECCCeEEEEECCcCcEEEE
Confidence 4445 355544335678999999999999999876533222 2112222 12222232233455555555544444
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccC--------------CCCCCCcEEEEEECCCCeeeEe-CCCCCCCCC
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCY--------------HDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTD 261 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~--------------~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~ 261 (383)
- ..|......... .+-.++..+.-...... ........|+..|+.+.....+ .-. .-.
T Consensus 118 y-~~p~~~~g~gt~---v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wl-- 190 (386)
T PF14583_consen 118 Y-EVPDDWKGYGTW---VANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWL-- 190 (386)
T ss_dssp E-E--TTEEEEEEE---EE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-E--
T ss_pred E-ECCcccccccce---eeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccc--
Confidence 3 444333321111 11223333322211100 0012347899999999888776 322 111
Q ss_pred CCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCC-ceEE
Q 016751 262 DADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHG-GYGL 339 (383)
Q Consensus 262 ~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~-~~~~ 339 (383)
.+....-.+..|.+.+.-..-..-.-+||.++..+. +.|......+... .-..... .+| .|++....+.+ ...+
T Consensus 191 -gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e~-~gHEfw~-~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 191 -GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGES-VGHEFWV-PDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp -EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEE-EEEEEE--TTSS-EEEEEEETTT--EEE
T ss_pred -cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCcc-ccccccc-CCCCEEEEEeecCCCCceEE
Confidence 112222234455454332110112347999997653 4455544443321 1222333 345 55554222112 1269
Q ss_pred EEEeCCCCeEEEE
Q 016751 340 LVYNPHSDTFKCI 352 (383)
Q Consensus 340 ~~yd~~t~~~~~v 352 (383)
..||++|.+-+.+
T Consensus 267 ~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 267 AGYDPDTGERRRL 279 (386)
T ss_dssp EEE-TTT--EEEE
T ss_pred EeeCCCCCCceEE
Confidence 9999999876654
No 79
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=80.10 E-value=2.2 Score=27.10 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=22.2
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeec
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEIN 207 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~ 207 (383)
...+++|+..+++|+.++ ++|.++..+
T Consensus 18 ~nd~~~~~~~~~~W~~~~-~~P~~R~~h 44 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIG-DLPPPRSGH 44 (49)
T ss_pred ecCEEEEECCCCEEEECC-CCCCCccce
Confidence 458899999999999997 787776544
No 80
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.79 E-value=46 Score=30.00 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=69.9
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEe
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM 293 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l 293 (383)
++.-||.+|+..... ..|...|+.+..-+.++.| +.........-....|++.+-+-... .+-.+
T Consensus 195 ~atpdGsvwyaslag--------naiaridp~~~~aev~p~P-~~~~~gsRriwsdpig~~wittwg~g------~l~rf 259 (353)
T COG4257 195 CATPDGSVWYASLAG--------NAIARIDPFAGHAEVVPQP-NALKAGSRRIWSDPIGRAWITTWGTG------SLHRF 259 (353)
T ss_pred EECCCCcEEEEeccc--------cceEEcccccCCcceecCC-CcccccccccccCccCcEEEeccCCc------eeeEe
Confidence 456689999876554 5899999999988888888 66432211111222355544322111 12222
Q ss_pred ccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEE
Q 016751 294 KEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV 354 (383)
Q Consensus 294 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~~ 354 (383)
+- ...+|.. +.++-..-.-..+.+...|++.+. . .+...+..||++|.+++.+-+
T Consensus 260 dP--s~~sW~e-ypLPgs~arpys~rVD~~grVW~s--e-a~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 260 DP--SVTSWIE-YPLPGSKARPYSMRVDRHGRVWLS--E-ADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred Cc--cccccee-eeCCCCCCCcceeeeccCCcEEee--c-cccCceeecCcccceEEEecC
Confidence 22 2345765 344432211223556677888886 4 232259999999999998854
No 81
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=78.54 E-value=48 Score=32.76 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=67.6
Q ss_pred ccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeec
Q 016751 118 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIA 197 (383)
Q Consensus 118 s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~ 197 (383)
..+|-++..+. .+.++.||||..++....-........+..-|-|. +++-.|+.......+.+|+...-+=+..+
T Consensus 59 n~dG~lL~SGS--DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~---tnnriv~sgAgDk~i~lfdl~~~~~~~~d 133 (758)
T KOG1310|consen 59 NADGELLASGS--DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY---TNNRIVLSGAGDKLIKLFDLDSSKEGGMD 133 (758)
T ss_pred cCCCCEEeecC--CcceEEeecchhcceeeeeecccccceeEEeeecc---CCCeEEEeccCcceEEEEecccccccccc
Confidence 56788887764 77899999999666554433333223355556666 66655555444678899988753222111
Q ss_pred c--CCCceee-ec-cCcccceeEECc-eEEEEEeeccCCCCCCCcEEEEEECCCCee
Q 016751 198 Y--GFPRSIE-IN-RSHINSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIF 249 (383)
Q Consensus 198 ~--~~p~~~~-~~-~~~~~~~v~~~G-~lYw~~~~~~~~~~~~~~~il~fD~~~~~~ 249 (383)
- ..+.... .+ ....+-++.-+| ..+|.+..+ ..|.-||+..-+-
T Consensus 134 ~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED--------GtirQyDiREph~ 182 (758)
T KOG1310|consen 134 HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED--------GTIRQYDIREPHV 182 (758)
T ss_pred cCccchhhhhhhhhhhhhheecCCCCCceEEEecCC--------cceeeecccCCcc
Confidence 0 1111100 00 000011344455 788888766 6899999887444
No 82
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=78.44 E-value=61 Score=30.58 Aligned_cols=187 Identities=12% Similarity=0.131 Sum_probs=92.8
Q ss_pred cCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC--ceeee
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN--SWKNI 196 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~--~W~~~ 196 (383)
.+|.+.+.. ..+.++.+|+.|++.+.--...... ...|. -.+-+|+.......+..++..++ .|+.-
T Consensus 104 ~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~-----~~~p~---v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 104 DGGLVFVGT---EKGEVIALDAEDGKELWRAKLSSEV-----LSPPL---VANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred cCCEEEEEc---CCCEEEEEECCCCcEeeeeccCcee-----ecCCE---EECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 466666654 4667888888887644321111100 00011 01112333222456788888765 58754
Q ss_pred ccCCC-ceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeE-eCCCCCCCCC-----CCceEE
Q 016751 197 AYGFP-RSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQT-VMMPYDLSTD-----DADKYL 267 (383)
Q Consensus 197 ~~~~p-~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~-i~lP~~~~~~-----~~~~~l 267 (383)
. ..+ .... .... ++..+|.+|.-... ..+.++|+.++ .|+. +..| ..... ......
T Consensus 173 ~-~~~~~~~~-~~~s---p~~~~~~v~~~~~~---------g~v~ald~~tG~~~W~~~~~~~-~g~~~~~~~~~~~~~p 237 (377)
T TIGR03300 173 R-VTPALTLR-GSAS---PVIADGGVLVGFAG---------GKLVALDLQTGQPLWEQRVALP-KGRTELERLVDVDGDP 237 (377)
T ss_pred c-CCCceeec-CCCC---CEEECCEEEEECCC---------CEEEEEEccCCCEeeeeccccC-CCCCchhhhhccCCcc
Confidence 4 222 1111 1122 67788888764433 38999998765 5643 2223 21100 011122
Q ss_pred EEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 016751 268 NVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 268 ~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
...+|.+++.... ..+..+..+. .+..|.... .. ...|. + .++.||+. . .++ .++++|.+++
T Consensus 238 ~~~~~~vy~~~~~-----g~l~a~d~~t--G~~~W~~~~----~~-~~~p~-~-~~~~vyv~--~-~~G-~l~~~d~~tG 299 (377)
T TIGR03300 238 VVDGGQVYAVSYQ-----GRVAALDLRS--GRVLWKRDA----SS-YQGPA-V-DDNRLYVT--D-ADG-VVVALDRRSG 299 (377)
T ss_pred EEECCEEEEEEcC-----CEEEEEECCC--CcEEEeecc----CC-ccCce-E-eCCEEEEE--C-CCC-eEEEEECCCC
Confidence 3346676665432 2455554443 234576531 11 11222 2 35678777 5 455 4999999887
Q ss_pred eE
Q 016751 348 TF 349 (383)
Q Consensus 348 ~~ 349 (383)
+.
T Consensus 300 ~~ 301 (377)
T TIGR03300 300 SE 301 (377)
T ss_pred cE
Confidence 63
No 83
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=77.14 E-value=74 Score=30.91 Aligned_cols=125 Identities=16% Similarity=0.218 Sum_probs=70.2
Q ss_pred ChHHHHHHHhcCCCCCCcEEEeecCCCCceeecccCCCcccccC--CCCCCC-CCCC-------eeEEEccCceE-EEee
Q 016751 59 SKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLC--DPPFRT-QLAD-------LDVVGSCNGVL-CFCS 127 (383)
Q Consensus 59 s~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~p~~~~-~~~~-------~~~~~s~~Gll-~~~~ 127 (383)
...|..-|.++.......++++....-+ +|+|...+...|. +|..+. .... ..-.+-.+|-. .+..
T Consensus 263 HTnFtdYY~R~~nsDGkrIvFq~~GdIy---lydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS 339 (668)
T COG4946 263 HTNFTDYYPRNANSDGKRIVFQNAGDIY---LYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS 339 (668)
T ss_pred cCCchhccccccCCCCcEEEEecCCcEE---EeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe
Confidence 3456666666666655567777744443 7887766655544 343321 1000 11123445543 3332
Q ss_pred cCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeec
Q 016751 128 NGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIA 197 (383)
Q Consensus 128 ~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~ 197 (383)
.++.+|.||--+-.++++..... ++.-++.++. =-|+.......+.||+.+++.=+.+.
T Consensus 340 ----RGkaFi~~~~~~~~iqv~~~~~V-rY~r~~~~~e------~~vigt~dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 340 ----RGKAFIMRPWDGYSIQVGKKGGV-RYRRIQVDPE------GDVIGTNDGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred ----cCcEEEECCCCCeeEEcCCCCce-EEEEEccCCc------ceEEeccCCceEEEEecCCceEEEee
Confidence 56889999998888888776542 2223333321 11222223668999999999876665
No 84
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=75.91 E-value=59 Score=29.15 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=65.2
Q ss_pred ECceEEEEEeeccCCCCCCCcEEEEEECCCCeee-EeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEecc
Q 016751 217 LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 295 (383)
Q Consensus 217 ~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~ 295 (383)
-+|.+|=-++.. ....|..+|+.+++.. ..++| ... +.--++..+++|+.++-.++ ..-++-.+
T Consensus 54 ~~g~LyESTG~y------G~S~l~~~d~~tg~~~~~~~l~-~~~---FgEGit~~~d~l~qLTWk~~----~~f~yd~~- 118 (264)
T PF05096_consen 54 DDGTLYESTGLY------GQSSLRKVDLETGKVLQSVPLP-PRY---FGEGITILGDKLYQLTWKEG----TGFVYDPN- 118 (264)
T ss_dssp ETTEEEEEECST------TEEEEEEEETTTSSEEEEEE-T-TT-----EEEEEEETTEEEEEESSSS----EEEEEETT-
T ss_pred CCCEEEEeCCCC------CcEEEEEEECCCCcEEEEEECC-ccc---cceeEEEECCEEEEEEecCC----eEEEEccc-
Confidence 467888766554 4569999999998774 55888 543 33457788999999887664 44443333
Q ss_pred CCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCe-EEEEEE
Q 016751 296 YGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDT-FKCIGV 354 (383)
Q Consensus 296 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~yd~~t~~-~~~v~~ 354 (383)
...++.++++..- -+ |++.+| .+++. ++..+++..|+++=+ .+.+.+
T Consensus 119 -----tl~~~~~~~y~~E-GW--GLt~dg~~Li~S----DGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 119 -----TLKKIGTFPYPGE-GW--GLTSDGKRLIMS----DGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp -----TTEEEEEEE-SSS-----EEEECSSCEEEE-----SSSEEEEE-TTT-SEEEEEE-
T ss_pred -----cceEEEEEecCCc-ce--EEEcCCCEEEEE----CCccceEEECCcccceEEEEEE
Confidence 2566666665431 12 333445 45554 454469999999854 445544
No 85
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=75.88 E-value=1e+02 Score=31.98 Aligned_cols=106 Identities=9% Similarity=0.193 Sum_probs=62.7
Q ss_pred CcEEEEEECCCCeeeE---eCCCCCCCCCCCceEEEEeC--CeEEEEEecCCCCccEEEEEEeccC----CCCCCeEEEE
Q 016751 236 PWLIVSFDFAKEIFQT---VMMPYDLSTDDADKYLNVFD--GYLCVFATIPNNTFRSYELWVMKEY----GLTESWTKLY 306 (383)
Q Consensus 236 ~~~il~fD~~~~~~~~---i~lP~~~~~~~~~~~l~~~~--g~L~~v~~~~~~~~~~l~iW~l~~~----~~~~~W~~~~ 306 (383)
.-....||....+|.. |..| +... ......++ ...-++....+ ..+.||.+.++ .....|....
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~P-H~~~---~vat~~~~~~rs~~~vta~~d---g~~KiW~~~~~~n~~k~~s~W~c~~ 503 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNP-HGNA---FVATIFLNPTRSVRCVTASVD---GDFKIWVFTDDSNIYKKSSNWTCKA 503 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecC-CCce---eEEEEEecCcccceeEEeccC---CeEEEEEEecccccCcCccceEEee
Confidence 3466788888888854 4778 5442 22222222 22133343333 59999999654 2346798854
Q ss_pred EecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCC-CeEEEE
Q 016751 307 TIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS-DTFKCI 352 (383)
Q Consensus 307 ~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t-~~~~~v 352 (383)
.=.+...-....++..+|.++.+ . .+. .+-.||..+ ++++..
T Consensus 504 i~sy~k~~i~a~~fs~dGslla~--s-~~~-~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 504 IGSYHKTPITALCFSQDGSLLAV--S-FDD-TITIWDYDTKNELLCT 546 (792)
T ss_pred eeccccCcccchhhcCCCcEEEE--e-cCC-EEEEecCCChhhhhcc
Confidence 33332111334556778888888 6 555 499999999 544443
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=74.64 E-value=75 Score=29.70 Aligned_cols=212 Identities=15% Similarity=0.191 Sum_probs=103.3
Q ss_pred EEEccCceEEEeecCC-CCceE--EEEccCccceeecCCCCCC-CCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCC
Q 016751 115 VVGSCNGVLCFCSNGS-DRSLI--YLWNPLIKKYMTLPRPSLN-PRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRS 190 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~-~~~~~--~v~NP~t~~~~~LP~~~~~-~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t 190 (383)
.+...+.+|....... ....+ +-.++.+++...+-..+.. .....+.+++. +.|-++.-.....+.+|+..+
T Consensus 43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~----g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD----GRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT----SSEEEEEETTTTEEEEEEECT
T ss_pred EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC----CCEEEEEEccCCeEEEEEccC
Confidence 3444555554444211 23333 3445555555554433321 11245666653 445554433367889999987
Q ss_pred Cc-eeee-------cc-CCC---ceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe--eeE---eC
Q 016751 191 NS-WKNI-------AY-GFP---RSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQT---VM 253 (383)
Q Consensus 191 ~~-W~~~-------~~-~~p---~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~--~~~---i~ 253 (383)
+. =... .. ..+ .....+.. ...=+|...|....+ .+.|..|++..+. ... +.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v----~~~pdg~~v~v~dlG-------~D~v~~~~~~~~~~~l~~~~~~~ 187 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV----VFSPDGRFVYVPDLG-------ADRVYVYDIDDDTGKLTPVDSIK 187 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEE----EE-TTSSEEEEEETT-------TTEEEEEEE-TTS-TEEEEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeE----EECCCCCEEEEEecC-------CCEEEEEEEeCCCceEEEeeccc
Confidence 42 1111 00 000 00111110 122246655555443 4689999998766 533 35
Q ss_pred CCCCCCCCCCceEEEEe-CC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC--c----eeEEEEEeeCCc
Q 016751 254 MPYDLSTDDADKYLNVF-DG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ--R----IWWPLGFTERGK 325 (383)
Q Consensus 254 lP~~~~~~~~~~~l~~~-~g-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--~----~~~~~~~~~~g~ 325 (383)
+| .... -..++.. +| .+|++.... ..+.+..++.. +..++.+..++... . ...-+.+..+|+
T Consensus 188 ~~-~G~G---PRh~~f~pdg~~~Yv~~e~s----~~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 188 VP-PGSG---PRHLAFSPDGKYAYVVNELS----NTVSVFDYDPS--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp CS-TTSS---EEEEEE-TTSSEEEEEETTT----TEEEEEEEETT--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred cc-cCCC---CcEEEEcCCcCEEEEecCCC----CcEEEEeeccc--CCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence 66 4442 1223333 34 566766554 48888888732 24677776665431 1 234456667786
Q ss_pred EEEEEEeeCCceEEEEEeC--CCCeEEEEE
Q 016751 326 IFIRGECRHGGYGLLVYNP--HSDTFKCIG 353 (383)
Q Consensus 326 i~~~~~~~~~~~~~~~yd~--~t~~~~~v~ 353 (383)
.+++- . .+...+.+|++ .+++++.+.
T Consensus 258 ~lyvs-n-r~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 258 FLYVS-N-RGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EEEEE-E-CTTTEEEEEEECTTTTTEEEEE
T ss_pred EEEEE-e-ccCCEEEEEEEecCCCceEEEE
Confidence 54441 3 23334777776 567887764
No 87
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=73.30 E-value=11 Score=28.52 Aligned_cols=41 Identities=7% Similarity=0.310 Sum_probs=30.4
Q ss_pred ceEEEEccCcc-ceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe
Q 016751 133 SLIYLWNPLIK-KYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV 179 (383)
Q Consensus 133 ~~~~v~NP~t~-~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~ 179 (383)
-.++++||.|| .|++.-+.. .-+.+-+|+. .+.|+||.+..
T Consensus 11 A~V~~yd~~tKk~WvPs~~~~---~~V~~y~~~~---~ntfRIi~~~~ 52 (111)
T cd01206 11 AHVFQIDPKTKKNWIPASKHA---VTVSYFYDST---RNVYRIISVGG 52 (111)
T ss_pred eEEEEECCCCcceeEeCCCCc---eeEEEEecCC---CcEEEEEEecC
Confidence 46899999996 887655321 2266778888 89999998753
No 88
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=73.12 E-value=60 Score=32.49 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=59.8
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCC--CeeeEe-CCCCCCCCC-----CCceEEEEeCCeEEEEEecCCCCc
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK--EIFQTV-MMPYDLSTD-----DADKYLNVFDGYLCVFATIPNNTF 285 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~--~~~~~i-~lP~~~~~~-----~~~~~l~~~~g~L~~v~~~~~~~~ 285 (383)
+++.+|.+|...... .|.++|..+ ..|+.- ..| ..... .....++..+|+|++.....
T Consensus 65 Pvv~~g~vyv~s~~g---------~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~~~~v~v~t~dg---- 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSYS---------RVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALYDGKVFFGTLDA---- 130 (527)
T ss_pred CEEECCEEEEECCCC---------cEEEEECCCCceeeEecCCCC-cccccccccccccccceEECCEEEEEcCCC----
Confidence 788999999866544 799999875 567643 333 21110 00112345567776644322
Q ss_pred cEEEEEEeccCCCCCCeEEEEE-ecCCC-ceeEEEEEeeCCcEEEEEEeeC-----CceEEEEEeCCCCeEEE
Q 016751 286 RSYELWVMKEYGLTESWTKLYT-IEKPQ-RIWWPLGFTERGKIFIRGECRH-----GGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~~~~-i~~~~-~~~~~~~~~~~g~i~~~~~~~~-----~~~~~~~yd~~t~~~~~ 351 (383)
.+.-++....+..|..... ..... ....|+. .++.||+. ... ++ .++.||.+|++...
T Consensus 131 ---~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~~g~Vivg--~~~~~~~~~G-~v~AlD~~TG~~lW 195 (527)
T TIGR03075 131 ---RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--VKGKVITG--ISGGEFGVRG-YVTAYDAKTGKLVW 195 (527)
T ss_pred ---EEEEEECCCCCEEeecccccccccccccCCcEE--ECCEEEEe--ecccccCCCc-EEEEEECCCCceeE
Confidence 2444443323456765321 11100 0112222 24556654 211 23 59999999997543
No 89
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=72.49 E-value=80 Score=29.07 Aligned_cols=147 Identities=13% Similarity=0.080 Sum_probs=67.6
Q ss_pred cCeEEEEEcC-CCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC-ee-eEeC-CC
Q 016751 180 NADAEVYSLR-SNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE-IF-QTVM-MP 255 (383)
Q Consensus 180 ~~~~~vyss~-t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~-~~-~~i~-lP 255 (383)
...+.+|+.. +++++... ..+....... - .+.-+|...+.+... ...|.+||+.+. .. ..+. ++
T Consensus 56 ~~~i~~~~~~~~g~l~~~~-~~~~~~~p~~-i---~~~~~g~~l~v~~~~-------~~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 56 EFRVLSYRIADDGALTFAA-ESPLPGSPTH-I---STDHQGRFLFSASYN-------ANCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CCcEEEEEECCCCceEEee-eecCCCCceE-E---EECCCCCEEEEEEcC-------CCeEEEEEECCCCCCCCceeecc
Confidence 4567778775 46776555 3332111000 0 223356544444322 258888988642 11 1221 12
Q ss_pred CCCCCCCCceEEEEe-CC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEE----EEEecCCCceeEEEEEeeCCcEEEE
Q 016751 256 YDLSTDDADKYLNVF-DG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTK----LYTIEKPQRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 256 ~~~~~~~~~~~l~~~-~g-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~----~~~i~~~~~~~~~~~~~~~g~i~~~ 329 (383)
... ....++.. +| .|++..... ..+.+|.++..+ .-.. ...++... ..+-+.+..+|+.+++
T Consensus 124 -~~~---~~~~~~~~p~g~~l~v~~~~~----~~v~v~d~~~~g---~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 124 -GLE---GCHSANIDPDNRTLWVPCLKE----DRIRLFTLSDDG---HLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYC 191 (330)
T ss_pred -CCC---cccEeEeCCCCCEEEEeeCCC----CEEEEEEECCCC---cccccCCCceecCCCC-CCceEEECCCCCEEEE
Confidence 111 11122222 44 445554433 488999887522 1111 11222211 1333566677765544
Q ss_pred EEeeCCceEEEEEeCC--CCeEEEE
Q 016751 330 GECRHGGYGLLVYNPH--SDTFKCI 352 (383)
Q Consensus 330 ~~~~~~~~~~~~yd~~--t~~~~~v 352 (383)
. ..... .+.+||.+ +++++.+
T Consensus 192 ~-~~~~~-~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 192 V-NELNS-SVDVWQLKDPHGEIECV 214 (330)
T ss_pred E-ecCCC-EEEEEEEeCCCCCEEEE
Confidence 1 31233 58888876 4565544
No 90
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=72.28 E-value=74 Score=28.57 Aligned_cols=140 Identities=13% Similarity=0.093 Sum_probs=76.8
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDL 258 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~ 258 (383)
.+.+..|+..|++=.... .+|.. .+.+. ...+++.+|-+.... ...+.||..+-+- ..++.| .
T Consensus 67 ~S~l~~~d~~tg~~~~~~-~l~~~-~FgEG----it~~~d~l~qLTWk~--------~~~f~yd~~tl~~~~~~~y~-~- 130 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSV-PLPPR-YFGEG----ITILGDKLYQLTWKE--------GTGFVYDPNTLKKIGTFPYP-G- 130 (264)
T ss_dssp EEEEEEEETTTSSEEEEE-E-TTT---EEE----EEEETTEEEEEESSS--------SEEEEEETTTTEEEEEEE-S-S-
T ss_pred cEEEEEEECCCCcEEEEE-ECCcc-cccee----EEEECCEEEEEEecC--------CeEEEEccccceEEEEEecC-C-
Confidence 567888999988643333 34433 23342 578899999999987 6899999975322 223444 2
Q ss_pred CCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-----eeEEEEEeeCCcEEEEEEee
Q 016751 259 STDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECR 333 (383)
Q Consensus 259 ~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~ 333 (383)
...-|+..+.+|.+-++.+ .++.++- .....+.+|..... ...-+-+ .+|.||-- .
T Consensus 131 ----EGWGLt~dg~~Li~SDGS~-------~L~~~dP----~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyAN--V- 191 (264)
T PF05096_consen 131 ----EGWGLTSDGKRLIMSDGSS-------RLYFLDP----ETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYAN--V- 191 (264)
T ss_dssp ----S--EEEECSSCEEEE-SSS-------EEEEE-T----TT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEE--E-
T ss_pred ----cceEEEcCCCEEEEECCcc-------ceEEECC----cccceEEEEEEEECCEECCCcEeEEE-EcCEEEEE--e-
Confidence 2345665566776665433 3555553 12344444443211 1111222 26777776 5
Q ss_pred CCceEEEEEeCCCCeEEE-EEE
Q 016751 334 HGGYGLLVYNPHSDTFKC-IGV 354 (383)
Q Consensus 334 ~~~~~~~~yd~~t~~~~~-v~~ 354 (383)
.....++..|++|++... +++
T Consensus 192 W~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-
T ss_pred CCCCeEEEEeCCCCeEEEEEEh
Confidence 444469999999999875 454
No 91
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=71.82 E-value=14 Score=28.27 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=29.8
Q ss_pred ceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEE
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTIS 178 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~ 178 (383)
-.+.++||.|+.|.+.-+.+.....+.+-+++. .+.|+|+...
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~---~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPR---NNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCC---CCEEEEEEee
Confidence 357899999999776544222222366777777 8889999864
No 92
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.51 E-value=1e+02 Score=32.47 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=23.3
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECC--CCeeeE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFA--KEIFQT 251 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~--~~~~~~ 251 (383)
++.++|.+|.....+ .++++|.. ++.|+.
T Consensus 190 Plvvgg~lYv~t~~~---------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 190 PLKVGDTLYLCTPHN---------KVIALDAATGKEKWKF 220 (764)
T ss_pred CEEECCEEEEECCCC---------eEEEEECCCCcEEEEE
Confidence 899999999976654 89999987 456764
No 93
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=71.18 E-value=1.4e+02 Score=31.42 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=66.0
Q ss_pred eEEEE--ccCccceeecCCCCCCC-----CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeee
Q 016751 134 LIYLW--NPLIKKYMTLPRPSLNP-----RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEI 206 (383)
Q Consensus 134 ~~~v~--NP~t~~~~~LP~~~~~~-----~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~ 206 (383)
.+++| |+.++.|..+.+...+. .....++... .. +++.......+.+|...++.=..+-.....+.
T Consensus 27 fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~--~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~-- 99 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SN--HFLTGSEQNTVLRYKFPSGEEDTILARFTLPI-- 99 (933)
T ss_pred EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---cc--ceEEeeccceEEEeeCCCCCccceeeeeeccc--
Confidence 45555 56667777665532221 1122222222 22 22222225677788776654332210111111
Q ss_pred ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEE-EeCCeEEEEEecCCCCc
Q 016751 207 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN-VFDGYLCVFATIPNNTF 285 (383)
Q Consensus 207 ~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~-~~~g~L~~v~~~~~~~~ 285 (383)
+.. .|..+|..-..+.+. ..|-..++.+..-...-.+ .... ...|. .-+|.+.++...+
T Consensus 100 -r~~---~v~g~g~~iaagsdD--------~~vK~~~~~D~s~~~~lrg-h~ap---Vl~l~~~p~~~fLAvss~d---- 159 (933)
T KOG1274|consen 100 -RDL---AVSGSGKMIAAGSDD--------TAVKLLNLDDSSQEKVLRG-HDAP---VLQLSYDPKGNFLAVSSCD---- 159 (933)
T ss_pred -eEE---EEecCCcEEEeecCc--------eeEEEEeccccchheeecc-cCCc---eeeeeEcCCCCEEEEEecC----
Confidence 111 455566666555544 5677777666554443222 1110 01111 1134444444444
Q ss_pred cEEEEEEeccCCCCCCeEE
Q 016751 286 RSYELWVMKEYGLTESWTK 304 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~ 304 (383)
..+.||.+++......|..
T Consensus 160 G~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred ceEEEEEcccchhhhhccc
Confidence 3888999887533344544
No 94
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=70.91 E-value=95 Score=29.28 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=74.3
Q ss_pred eEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe--eeEeCCC-CCC
Q 016751 182 DAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTVMMP-YDL 258 (383)
Q Consensus 182 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~--~~~i~lP-~~~ 258 (383)
.+.....++..|.... .......+.... ++..+|++|.....+ .|.+||..+.+ |+.-..+ ...
T Consensus 36 ~~~~~~~g~~~W~~~~-~~~~~~~~~~~~---~~~~dg~v~~~~~~G---------~i~A~d~~~g~~~W~~~~~~~~~~ 102 (370)
T COG1520 36 AVANNTSGTLLWSVSL-GSGGGGIYAGPA---PADGDGTVYVGTRDG---------NIFALNPDTGLVKWSYPLLGAVAQ 102 (370)
T ss_pred EEEcccCcceeeeeec-ccCccceEeccc---cEeeCCeEEEecCCC---------cEEEEeCCCCcEEecccCcCccee
Confidence 4444555666786432 111111222221 389999999975443 89999998776 7554321 011
Q ss_pred CCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceE
Q 016751 259 STDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYG 338 (383)
Q Consensus 259 ~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 338 (383)
. ...+...+|+|++-.... .++.+++...+..|....... .. +..+ .+..++.+++. . .++ .
T Consensus 103 ~----~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~~-~~-~~~~-~v~~~~~v~~~--s-~~g-~ 164 (370)
T COG1520 103 L----SGPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSRNVGGS-PY-YASP-PVVGDGTVYVG--T-DDG-H 164 (370)
T ss_pred c----cCceEEeCCeEEEecccc-------eEEEEECCCCcEEEEEecCCC-eE-EecC-cEEcCcEEEEe--c-CCC-e
Confidence 1 112223377765543221 566777633345677654331 11 1222 23345667776 4 445 4
Q ss_pred EEEEeCCCCeEEE
Q 016751 339 LLVYNPHSDTFKC 351 (383)
Q Consensus 339 ~~~yd~~t~~~~~ 351 (383)
+++.|..|++.+.
T Consensus 165 ~~al~~~tG~~~W 177 (370)
T COG1520 165 LYALNADTGTLKW 177 (370)
T ss_pred EEEEEccCCcEEE
Confidence 9999999887643
No 95
>PF13854 Kelch_5: Kelch motif
Probab=69.02 E-value=13 Score=22.57 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=22.9
Q ss_pred CceEEEEeCCeEEEEEecCC-CCccEEEEEEecc
Q 016751 263 ADKYLNVFDGYLCVFATIPN-NTFRSYELWVMKE 295 (383)
Q Consensus 263 ~~~~l~~~~g~L~~v~~~~~-~~~~~l~iW~l~~ 295 (383)
.....+..+++|+++++... .....-++|+++-
T Consensus 6 ~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l 39 (42)
T PF13854_consen 6 YGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDL 39 (42)
T ss_pred cceEEEEECCEEEEEcCccCCCCCEECcEEEEEC
Confidence 45667778899999998773 2334457888763
No 96
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.88 E-value=13 Score=27.27 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=35.7
Q ss_pred eEEC-ceEEEEEeeccC---------CCCCCCcEEEEEECCCCeeeEe----CCCCCCCCCCCceEEEEeCCeEEEEEec
Q 016751 215 VFLN-GSVHWCARFSCY---------HDNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDADKYLNVFDGYLCVFATI 280 (383)
Q Consensus 215 v~~~-G~lYw~~~~~~~---------~~~~~~~~il~fD~~~~~~~~i----~lP~~~~~~~~~~~l~~~~g~L~~v~~~ 280 (383)
|.-+ |.+|+...+..+ .+......++.||+.+++...+ ..| + ...|..-+..|.++...
T Consensus 5 v~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fp-N------GVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 5 VDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFP-N------GVALSPDESFVLVAETG 77 (89)
T ss_dssp E-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSE-E------EEEE-TTSSEEEEEEGG
T ss_pred EecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCcc-C------eEEEcCCCCEEEEEecc
Confidence 4455 889987765432 1245568999999999998776 344 2 22333333456666554
Q ss_pred CCCCccEEEEEE
Q 016751 281 PNNTFRSYELWV 292 (383)
Q Consensus 281 ~~~~~~~l~iW~ 292 (383)
.. ..++.|.
T Consensus 78 ~~---Ri~rywl 86 (89)
T PF03088_consen 78 RY---RILRYWL 86 (89)
T ss_dssp GT---EEEEEES
T ss_pred Cc---eEEEEEE
Confidence 43 4555664
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=67.96 E-value=1.2e+02 Score=29.19 Aligned_cols=116 Identities=11% Similarity=0.175 Sum_probs=71.1
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEe
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM 293 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l 293 (383)
.++-||.++-.+..+ ..+-.||+.+.. ..-..| .+.. .-..+.-.++.-+++...++ ..+.+|-|
T Consensus 354 ~fHpDgLifgtgt~d--------~~vkiwdlks~~-~~a~Fp-ght~--~vk~i~FsENGY~Lat~add---~~V~lwDL 418 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPD--------GVVKIWDLKSQT-NVAKFP-GHTG--PVKAISFSENGYWLATAADD---GSVKLWDL 418 (506)
T ss_pred eEcCCceEEeccCCC--------ceEEEEEcCCcc-ccccCC-CCCC--ceeEEEeccCceEEEEEecC---CeEEEEEe
Confidence 455677777665544 577889998877 444777 4331 12234444555666666655 46999999
Q ss_pred ccCCCCCCeEEEEEecCCCc-eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 016751 294 KEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 294 ~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~ 353 (383)
.... ...++.+... ....+.+...|..+.. .+.+- .++.|+-+++.|.++.
T Consensus 419 RKl~------n~kt~~l~~~~~v~s~~fD~SGt~L~~--~g~~l-~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 419 RKLK------NFKTIQLDEKKEVNSLSFDQSGTYLGI--AGSDL-QVYICKKKTKSWTEIK 470 (506)
T ss_pred hhhc------ccceeeccccccceeEEEcCCCCeEEe--eccee-EEEEEecccccceeee
Confidence 7632 1223333321 2444666777766666 31333 5899999999999884
No 98
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=67.94 E-value=8.3 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=18.1
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK 246 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~ 246 (383)
+++.+|.+|.....+ .+.+||..+
T Consensus 17 ~~v~~g~vyv~~~dg---------~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDG---------NLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTS---------EEEEEETT-
T ss_pred CEEECCEEEEEcCCC---------EEEEEeCCC
Confidence 688899999977765 899999864
No 99
>PLN00181 protein SPA1-RELATED; Provisional
Probab=66.78 E-value=1.8e+02 Score=30.83 Aligned_cols=183 Identities=13% Similarity=0.110 Sum_probs=91.8
Q ss_pred CCceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc-eeeeccCCCceeeecc
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS-WKNIAYGFPRSIEINR 208 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~-W~~~~~~~p~~~~~~~ 208 (383)
.++.+.|||..+++.... ..... ....+.+++. .+. .++.......+.+|+.+++. ...+. . .....
T Consensus 553 ~Dg~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~---~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~-~~~v~--- 621 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTE--MKEHEKRVWSIDYSSA---DPT-LLASGSDDGSVKLWSINQGVSIGTIK-T-KANIC--- 621 (793)
T ss_pred CCCeEEEEECCCCeEEEE--ecCCCCCEEEEEEcCC---CCC-EEEEEcCCCEEEEEECCCCcEEEEEe-c-CCCeE---
Confidence 577888999877654331 11111 2256666654 333 33333335688999987642 22222 1 00000
Q ss_pred CcccceeEE---CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCc
Q 016751 209 SHINSSVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF 285 (383)
Q Consensus 209 ~~~~~~v~~---~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~ 285 (383)
++.. +|.....+... ..|..||+.+..-....+. .+.. ....+.-.++...+....+
T Consensus 622 -----~v~~~~~~g~~latgs~d--------g~I~iwD~~~~~~~~~~~~-~h~~--~V~~v~f~~~~~lvs~s~D---- 681 (793)
T PLN00181 622 -----CVQFPSESGRSLAFGSAD--------HKVYYYDLRNPKLPLCTMI-GHSK--TVSYVRFVDSSTLVSSSTD---- 681 (793)
T ss_pred -----EEEEeCCCCCEEEEEeCC--------CeEEEEECCCCCccceEec-CCCC--CEEEEEEeCCCEEEEEECC----
Confidence 2211 35555544433 5899999876431111111 1110 1122333456554544444
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 016751 286 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
..+.+|.+........|..+..+.-.......+++..+|.++.. ...++ .+.+||..+.
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~las--gs~D~-~v~iw~~~~~ 740 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIAT--GSETN-EVFVYHKAFP 740 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEE--EeCCC-EEEEEECCCC
Confidence 58999998743222345555555432112344566666766666 32344 4888887655
No 100
>PTZ00420 coronin; Provisional
Probab=65.32 E-value=1.6e+02 Score=29.81 Aligned_cols=195 Identities=12% Similarity=0.173 Sum_probs=93.4
Q ss_pred CCceEEEEccCccce--eecCCC----CCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc-eeeeccCCCc
Q 016751 131 DRSLIYLWNPLIKKY--MTLPRP----SLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS-WKNIAYGFPR 202 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~--~~LP~~----~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~-W~~~~~~~p~ 202 (383)
.++.+.|||..++.. ..+..+ .... ....+.++|. ..+.++.......+.||+.+++. -..+. .+.
T Consensus 95 ~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~----g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~ 168 (568)
T PTZ00420 95 EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM----NYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPK 168 (568)
T ss_pred CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC----CCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCC
Confidence 567788888655321 111000 1111 1144566664 23333333336688899998764 11111 111
Q ss_pred eeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeee-EeCCCCCCCCCCCceEEEE--eCCeEEEEEe
Q 016751 203 SIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNV--FDGYLCVFAT 279 (383)
Q Consensus 203 ~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~--~~g~L~~v~~ 279 (383)
... +- ...-+|.+...+..+ ..|..||+.+..-. .+... ..........+.. .++...+..+
T Consensus 169 ~V~---Sl---swspdG~lLat~s~D--------~~IrIwD~Rsg~~i~tl~gH-~g~~~s~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 169 KLS---SL---KWNIKGNLLSGTCVG--------KHMHIIDPRKQEIASSFHIH-DGGKNTKNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred cEE---EE---EECCCCCEEEEEecC--------CEEEEEECCCCcEEEEEecc-cCCceeEEEEeeeEcCCCCEEEEEE
Confidence 111 00 223367766544433 47999999876542 22222 1110000111111 2344444444
Q ss_pred cCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 016751 280 IPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 280 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v 352 (383)
.++...+.+.||-+.... +-.....++...-...|.....+|.+|+. ++.++ .+.+|+..++.+..+
T Consensus 234 ~d~~~~R~VkLWDlr~~~---~pl~~~~ld~~~~~L~p~~D~~tg~l~ls--GkGD~-tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTT---SALVTMSIDNASAPLIPHYDESTGLIYLI--GKGDG-NCRYYQHSLGSIRKV 300 (568)
T ss_pred cCCCCccEEEEEECCCCC---CceEEEEecCCccceEEeeeCCCCCEEEE--EECCC-eEEEEEccCCcEEee
Confidence 333223579999988532 11222233332112344555556788888 53344 599999988876665
No 101
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=65.02 E-value=1.3e+02 Score=28.52 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=23.3
Q ss_pred CCceEEEEccCccceeecCCCCCCCCceeEEEecc
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSV 165 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~ 165 (383)
.++.+.+|||.|++..-=|-........++.+.|.
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPL 211 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence 46789999999998775444443333366666654
No 102
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=64.16 E-value=1.5e+02 Score=29.03 Aligned_cols=201 Identities=13% Similarity=0.123 Sum_probs=100.8
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCcc--ceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIK--KYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS 192 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~--~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~ 192 (383)
+.-+-+|..++... .+..+.||+...+ ..+.+..... ..+.+.|.+. + =.++.......+.|++.++++
T Consensus 209 ~~fs~d~~~l~s~s--~D~tiriwd~~~~~~~~~~l~gH~~--~v~~~~f~p~---g--~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGS--DDKTLRIWDLKDDGRNLKTLKGHST--YVTSVAFSPD---G--NLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred eEECCCCcEEEEec--CCceEEEeeccCCCeEEEEecCCCC--ceEEEEecCC---C--CEEEEecCCCcEEEEeccCCe
Confidence 45667776555543 6788899988322 2233432221 1266677765 3 233333337788999998853
Q ss_pred eeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeC
Q 016751 193 WKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFD 271 (383)
Q Consensus 193 W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~ 271 (383)
=...- ......... ...--+|.+.+.+..+ ..|..+|+.++....+ .+. ..........+....
T Consensus 280 ~~~~l-~~hs~~is~-----~~f~~d~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 280 CVRKL-KGHSDGISG-----LAFSPDGNLLVSASYD--------GTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSP 344 (456)
T ss_pred EEEee-eccCCceEE-----EEECCCCCEEEEcCCC--------ccEEEEECCCCceeeeeccc-CCCCCCceeEEEECC
Confidence 32211 111110000 0233456666655433 6899999999997521 111 111110112333335
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 272 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 272 g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
+..+++....+ ..+.+|.+........|.-... .... .+.++. ...|..++. ...+. .+..+|+.++.
T Consensus 345 ~~~~ll~~~~d---~~~~~w~l~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~i~s--g~~d~-~v~~~~~~s~~ 412 (456)
T KOG0266|consen 345 NGKYLLSASLD---RTLKLWDLRSGKSVGTYTGHSN-LVRC-IFSPTL-STGGKLIYS--GSEDG-SVYVWDSSSGG 412 (456)
T ss_pred CCcEEEEecCC---CeEEEEEccCCcceeeecccCC-ccee-Eecccc-cCCCCeEEE--EeCCc-eEEEEeCCccc
Confidence 55555555554 5999999986432222222111 0111 122222 334555555 31344 49999999754
No 103
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=63.04 E-value=1.3e+02 Score=28.00 Aligned_cols=117 Identities=9% Similarity=0.101 Sum_probs=69.7
Q ss_pred eEEEEEeeccCCCCCCCcEEEEEECCC--CeeeEe-CCCCCCCCCCCceEEEEeC-CeEEEEEecCCCCccEEEEEEecc
Q 016751 220 SVHWCARFSCYHDNSCPWLIVSFDFAK--EIFQTV-MMPYDLSTDDADKYLNVFD-GYLCVFATIPNNTFRSYELWVMKE 295 (383)
Q Consensus 220 ~lYw~~~~~~~~~~~~~~~il~fD~~~--~~~~~i-~lP~~~~~~~~~~~l~~~~-g~L~~v~~~~~~~~~~l~iW~l~~ 295 (383)
.||.....+ ....|.+|.... ++.+.+ ..+ ..-. ....+.+.+ |+..++..++. ..+.+..+++
T Consensus 53 ~LY~v~~~~------~~ggvaay~iD~~~G~Lt~ln~~~-~~g~--~p~yvsvd~~g~~vf~AnY~~---g~v~v~p~~~ 120 (346)
T COG2706 53 HLYVVNEPG------EEGGVAAYRIDPDDGRLTFLNRQT-LPGS--PPCYVSVDEDGRFVFVANYHS---GSVSVYPLQA 120 (346)
T ss_pred EEEEEEecC------CcCcEEEEEEcCCCCeEEEeeccc-cCCC--CCeEEEECCCCCEEEEEEccC---ceEEEEEccc
Confidence 688776653 345677776654 788887 222 1111 124555554 55555555554 5889988887
Q ss_pred CCCCCCeEEEEEecCCCc---------eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 016751 296 YGLTESWTKLYTIEKPQR---------IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 296 ~~~~~~W~~~~~i~~~~~---------~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v 352 (383)
++ .-|..+..+....- ......+..+++.++. ...+.++++.|+++.++++..
T Consensus 121 dG--~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v--~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 121 DG--SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV--PDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred CC--ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE--eecCCceEEEEEcccCccccc
Confidence 54 34554333322110 2455667788877777 423334699999999888765
No 104
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=62.62 E-value=25 Score=19.63 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=18.2
Q ss_pred eCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 322 ERGKIFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 322 ~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
.+|.+|+. . .++ .++++|.++++...
T Consensus 5 ~~~~v~~~--~-~~g-~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVG--S-TDG-TLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEE--c-CCC-EEEEEEcccCcEEE
Confidence 34566666 4 455 49999999987553
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=62.57 E-value=1.1e+02 Score=27.01 Aligned_cols=201 Identities=16% Similarity=0.161 Sum_probs=92.7
Q ss_pred ceEEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCcee-eecc
Q 016751 121 GVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWK-NIAY 198 (383)
Q Consensus 121 Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~-~~~~ 198 (383)
..+++... ....+.++|..+++... ++... ...++.+++. +.+-++.......+.+|+.+++.-. ....
T Consensus 85 ~~l~~~~~--~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~d----g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 85 KILYIANE--DDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPD----GKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred CEEEEEcC--CCCeEEEEECCCCeEEeEeeCCC---CcceEEECCC----CCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 34544432 45689999998865432 33211 1133555543 2232222111234556676654221 1110
Q ss_pred -CCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCC-CCCCCC-CceEEEEe-CCe
Q 016751 199 -GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPY-DLSTDD-ADKYLNVF-DGY 273 (383)
Q Consensus 199 -~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~-~~~~~~-~~~~l~~~-~g~ 273 (383)
..+... ...-+|...++.... ...|..||+.+.+. ..+.... ...... ....+... +|+
T Consensus 156 ~~~~~~~---------~~s~dg~~l~~~~~~-------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 156 DQRPRFA---------EFTADGKELWVSSEI-------GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred CCCccEE---------EECCCCCEEEEEcCC-------CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 111100 233356544444321 24788999987654 3232110 111000 11123322 355
Q ss_pred EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEE
Q 016751 274 LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCI 352 (383)
Q Consensus 274 L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~-~~v 352 (383)
..++..... ..+.+|-++. |..+..+.... ....+.+..+|..++.. ...++ ++.+||+++.+. +.+
T Consensus 220 ~~~~~~~~~---~~i~v~d~~~------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~-~~~~~-~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 220 TAFVALGPA---NRVAVVDAKT------YEVLDYLLVGQ-RVWQLAFTPDEKYLLTT-NGVSN-DVSVIDVAALKVIKSI 287 (300)
T ss_pred EEEEEcCCC---CeEEEEECCC------CcEEEEEEeCC-CcceEEECCCCCEEEEE-cCCCC-eEEEEECCCCcEEEEE
Confidence 433333322 4688886543 34433333222 23345666777655541 21344 599999999884 667
Q ss_pred EEecCc
Q 016751 353 GVHLPY 358 (383)
Q Consensus 353 ~~~~~~ 358 (383)
...+.+
T Consensus 288 ~~~~~~ 293 (300)
T TIGR03866 288 KVGRLP 293 (300)
T ss_pred Eccccc
Confidence 665444
No 106
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=61.88 E-value=2.5e+02 Score=30.93 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=96.7
Q ss_pred cCceEEEeecCCCCceEEEEccCccceeecCCCCCC---------------CCceeEEEeccCCCCCCeEEEEEEecCeE
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN---------------PRYLGFGVNSVSGHLDDFKVVTISVNADA 183 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~---------------~~~~~~g~d~~~~~~~~ykVv~~~~~~~~ 183 (383)
.++.|.+.+. ....+.++|+.++.-..+...... ....++.+++. .+ ...|.-.....+
T Consensus 634 ~gn~LYVaDt--~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~---~g-~LyVad~~~~~I 707 (1057)
T PLN02919 634 KKNLLYVADT--ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV---NE-KVYIAMAGQHQI 707 (1057)
T ss_pred CCCEEEEEeC--CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC---CC-eEEEEECCCCeE
Confidence 3455555442 334566667666655444321100 01145666663 22 222222225567
Q ss_pred EEEEcCCCceeeeccC---------CCceeeeccCcccceeEE--Cce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeE
Q 016751 184 EVYSLRSNSWKNIAYG---------FPRSIEINRSHINSSVFL--NGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQT 251 (383)
Q Consensus 184 ~vyss~t~~W~~~~~~---------~p~~~~~~~~~~~~~v~~--~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~ 251 (383)
.+|+..++..+..... .+......... ++.+ +|. +|...... ..|..||+.+.....
T Consensus 708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~---GIavspdG~~LYVADs~n--------~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPS---GISLSPDLKELYIADSES--------SSIRALDLKTGGSRL 776 (1057)
T ss_pred EEEECCCCeEEEEecCCccccCCCCccccccccCcc---EEEEeCCCCEEEEEECCC--------CeEEEEECCCCcEEE
Confidence 7787776655433200 00000111122 4444 454 88765544 689999998765332
Q ss_pred eC-----CCCCCC-----CC--------CCceEEEE-eCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecC--
Q 016751 252 VM-----MPYDLS-----TD--------DADKYLNV-FDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEK-- 310 (383)
Q Consensus 252 i~-----lP~~~~-----~~--------~~~~~l~~-~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-- 310 (383)
+. .| ... .+ .....++. .+|.|+++.... ..+.+|..+. .....+.....
T Consensus 777 ~~gg~~~~~-~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N----~rIrviD~~t----g~v~tiaG~G~~G 847 (1057)
T PLN02919 777 LAGGDPTFS-DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN----HKIKKLDPAT----KRVTTLAGTGKAG 847 (1057)
T ss_pred EEecccccC-cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC----CEEEEEECCC----CeEEEEeccCCcC
Confidence 21 11 100 00 01112333 357888887655 4777776653 11111111100
Q ss_pred -------CCceeEE--EEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 311 -------PQRIWWP--LGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 311 -------~~~~~~~--~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
......| +++..+|++|+. ...+. .+..+|+++++.
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn-~Irvid~~~~~~ 892 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVA--DTNNS-LIRYLDLNKGEA 892 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEE--ECCCC-EEEEEECCCCcc
Confidence 0001233 455677899888 52344 599999999875
No 107
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=61.29 E-value=1.2e+02 Score=29.10 Aligned_cols=136 Identities=13% Similarity=0.220 Sum_probs=71.2
Q ss_pred cCceEEEeecCCC--CceEEEEccCccceeecCCCCCC----CCceeE----EEeccCCCCCCeEEEEEEecCeEEEEEc
Q 016751 119 CNGVLCFCSNGSD--RSLIYLWNPLIKKYMTLPRPSLN----PRYLGF----GVNSVSGHLDDFKVVTISVNADAEVYSL 188 (383)
Q Consensus 119 ~~Gll~~~~~~~~--~~~~~v~NP~t~~~~~LP~~~~~----~~~~~~----g~d~~~~~~~~ykVv~~~~~~~~~vyss 188 (383)
-+.|+++.-.++. .-+++|+|..|++-.++..+... +..-|+ ||-=. ++.+|+ |+-
T Consensus 237 vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLq---tGe~K~-----------Fd~ 302 (448)
T PF12458_consen 237 VGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQ---TGEYKT-----------FDT 302 (448)
T ss_pred cCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEec---cCCcee-----------ecc
Confidence 3445566554322 23899999999999988765432 111222 22222 333333 332
Q ss_pred CCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEE
Q 016751 189 RSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN 268 (383)
Q Consensus 189 ~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~ 268 (383)
... .+-+......++ | ..+||..-... .....++.||+...+.. -| -.+. ..-.
T Consensus 303 ~~~-------~l~F~r~vrSPN---G---EDvLYvF~~~~-----~g~~~Ll~YN~I~k~v~---tP-i~ch----G~al 356 (448)
T PF12458_consen 303 DMD-------GLEFERKVRSPN---G---EDVLYVFYARE-----EGRYLLLPYNLIRKEVA---TP-IICH----GYAL 356 (448)
T ss_pred cCC-------CceEEEEecCCC---C---ceEEEEEEECC-----CCcEEEEechhhhhhhc---CC-eecc----ceeE
Confidence 222 222222211111 1 23677765443 45678999998876654 34 2221 1222
Q ss_pred EeCCeEEEEEecCC--CCccEEEEEEec
Q 016751 269 VFDGYLCVFATIPN--NTFRSYELWVMK 294 (383)
Q Consensus 269 ~~~g~L~~v~~~~~--~~~~~l~iW~l~ 294 (383)
--+|+|+++..... ....-++||..-
T Consensus 357 f~DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 357 FEDGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred ecCCEEEEEecCCCCcceeccceeecCC
Confidence 33689988876522 234567899864
No 108
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=61.04 E-value=2.1e+02 Score=29.69 Aligned_cols=109 Identities=13% Similarity=0.196 Sum_probs=61.5
Q ss_pred eeEEC--ceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEE-EeCCeEEEEEecCCCCccEEEE
Q 016751 214 SVFLN--GSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN-VFDGYLCVFATIPNNTFRSYEL 290 (383)
Q Consensus 214 ~v~~~--G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~-~~~g~L~~v~~~~~~~~~~l~i 290 (383)
+|.++ |-+-..+... ...|.+.++.|++--.+--- +.. ....|. ...|.+.+-...+ .++++
T Consensus 440 cvavD~sGelV~AG~~d-------~F~IfvWS~qTGqllDiLsG-HEg---PVs~l~f~~~~~~LaS~SWD----kTVRi 504 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQD-------SFEIFVWSVQTGQLLDILSG-HEG---PVSGLSFSPDGSLLASGSWD----KTVRI 504 (893)
T ss_pred EEEEcCCCCEEEeeccc-------eEEEEEEEeecCeeeehhcC-CCC---cceeeEEccccCeEEecccc----ceEEE
Confidence 56777 8887766554 47899999999988665211 111 112222 2345544444444 59999
Q ss_pred EEeccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCCceEEEEEeCCCC
Q 016751 291 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 291 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
|.+-+ +|..+.++..... ..-+.+..+| +|-+. . .+++ +-.||.+.+
T Consensus 505 W~if~-----s~~~vEtl~i~sd-vl~vsfrPdG~elaVa--T-ldgq-Itf~d~~~~ 552 (893)
T KOG0291|consen 505 WDIFS-----SSGTVETLEIRSD-VLAVSFRPDGKELAVA--T-LDGQ-ITFFDIKEA 552 (893)
T ss_pred EEeec-----cCceeeeEeeccc-eeEEEEcCCCCeEEEE--E-ecce-EEEEEhhhc
Confidence 99875 3666667766542 2223344444 44444 3 4443 555665543
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.93 E-value=1.3e+02 Score=26.78 Aligned_cols=124 Identities=10% Similarity=0.091 Sum_probs=59.8
Q ss_pred CCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee
Q 016751 170 DDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF 249 (383)
Q Consensus 170 ~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~ 249 (383)
.-+|++.......+.|.....++|+.-. .+.....+.+...+++..-....|-..... +..-.|..-|-..+.|
T Consensus 174 ~~krlvSgGcDn~VkiW~~~~~~w~~e~-~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq-----Dg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 174 KVKRLVSGGCDNLVKIWKFDSDSWKLER-TLEGHKDWVRDVAWAPSVGLPKSTIASCSQ-----DGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccceeeccCCccceeeeecCCcchhhhh-hhhhcchhhhhhhhccccCCCceeeEEecC-----CCcEEEEEecCccCcc
Confidence 3466666665677888888888997544 221111111111111222122222222221 1222444445556788
Q ss_pred eEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe
Q 016751 250 QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI 308 (383)
Q Consensus 250 ~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 308 (383)
....+- ...+..+... -...|.+..|.+.+ +.+.+|+-+- +++|.++...
T Consensus 248 k~tll~-~f~~~~w~vS-WS~sGn~LaVs~Gd----Nkvtlwke~~---~Gkw~~v~~~ 297 (299)
T KOG1332|consen 248 KKTLLE-EFPDVVWRVS-WSLSGNILAVSGGD----NKVTLWKENV---DGKWEEVGEV 297 (299)
T ss_pred cccccc-cCCcceEEEE-EeccccEEEEecCC----cEEEEEEeCC---CCcEEEcccc
Confidence 765332 2111102111 23346555555544 4899998875 3579987543
No 110
>PF13013 F-box-like_2: F-box-like domain
Probab=56.85 E-value=9.5 Score=29.12 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHhcCChhhhHHhhccch
Q 016751 22 SSFRLPEDVMIDIFLRLEVKNLARLRCVCK 51 (383)
Q Consensus 22 ~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK 51 (383)
...+||+||+..|+..-..+.+...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 467899999999999999888876666665
No 111
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=55.90 E-value=1.9e+02 Score=27.61 Aligned_cols=161 Identities=11% Similarity=0.080 Sum_probs=85.2
Q ss_pred CCCeEEEEEEe--c-CeEEEEEcCCC-----ceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEE
Q 016751 169 LDDFKVVTISV--N-ADAEVYSLRSN-----SWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIV 240 (383)
Q Consensus 169 ~~~ykVv~~~~--~-~~~~vyss~t~-----~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il 240 (383)
.+.|-++.... . ..+.+.+..++ .|+.+....+..... .-..++.+|+++... .....++
T Consensus 237 d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~-------v~~~~~~~yi~Tn~~-----a~~~~l~ 304 (414)
T PF02897_consen 237 DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY-------VDHHGDRLYILTNDD-----APNGRLV 304 (414)
T ss_dssp TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE-------EEEETTEEEEEE-TT------TT-EEE
T ss_pred cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE-------EEccCCEEEEeeCCC-----CCCcEEE
Confidence 35566666555 3 56677777664 788776222222221 334578888877643 3457999
Q ss_pred EEECCCCe---eeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEE
Q 016751 241 SFDFAKEI---FQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWP 317 (383)
Q Consensus 241 ~fD~~~~~---~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 317 (383)
+.|+.+.. |..+-.| . .....-..+...+++|.+....+. ...+.++.++ ..|.. ..+++... ..+
T Consensus 305 ~~~l~~~~~~~~~~~l~~-~-~~~~~l~~~~~~~~~Lvl~~~~~~--~~~l~v~~~~-----~~~~~-~~~~~p~~-g~v 373 (414)
T PF02897_consen 305 AVDLADPSPAEWWTVLIP-E-DEDVSLEDVSLFKDYLVLSYRENG--SSRLRVYDLD-----DGKES-REIPLPEA-GSV 373 (414)
T ss_dssp EEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEEETT--EEEEEEEETT------TEEE-EEEESSSS-SEE
T ss_pred EecccccccccceeEEcC-C-CCceeEEEEEEECCEEEEEEEECC--ccEEEEEECC-----CCcEE-eeecCCcc-eEE
Confidence 99998765 6644333 2 111122345566888888777664 2344444444 12443 23333321 222
Q ss_pred EEEe---eCCcEEEEEEeeCCc-eEEEEEeCCCCeEEEEE
Q 016751 318 LGFT---ERGKIFIRGECRHGG-YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 318 ~~~~---~~g~i~~~~~~~~~~-~~~~~yd~~t~~~~~v~ 353 (383)
.+.. ..+.+++.-++ ... ..++.||+.+++.+.+.
T Consensus 374 ~~~~~~~~~~~~~~~~ss-~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 374 SGVSGDFDSDELRFSYSS-FTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEES-TT-SEEEEEEEE-TTEEEEEEEEETTTTCEEEEE
T ss_pred eccCCCCCCCEEEEEEeC-CCCCCEEEEEECCCCCEEEEE
Confidence 2222 23356665112 111 27999999999988764
No 112
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=55.84 E-value=84 Score=30.73 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=36.9
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCc----------------------------------e---eEEEEEeeCCcEEE
Q 016751 286 RSYELWVMKEYGLTESWTKLYTIEKPQR----------------------------------I---WWPLGFTERGKIFI 328 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~----------------------------------~---~~~~~~~~~g~i~~ 328 (383)
..+.+|-.+.-.....|.++|.-|.... + ...+++.++|.++.
T Consensus 187 G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLC 266 (673)
T ss_pred CeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEE
Confidence 4788888876544566777776654322 1 12355566777766
Q ss_pred EEEeeCCceEEEEEeCCCCe
Q 016751 329 RGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 329 ~~~~~~~~~~~~~yd~~t~~ 348 (383)
.|+. .+ +++.||++..+
T Consensus 267 aG~s--~G-~~i~YD~R~~k 283 (673)
T KOG4378|consen 267 AGNS--KG-ELIAYDMRSTK 283 (673)
T ss_pred eecC--Cc-eEEEEecccCC
Confidence 6333 33 48999998754
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=54.99 E-value=97 Score=28.29 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=46.0
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 272 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 272 g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
+.+..++..+ .++++|.++..+.... .-+..++-+ ...++..++|.-++.+ . .++. +-.+|+.+++...
T Consensus 40 ~~~~~A~SWD----~tVR~wevq~~g~~~~-ka~~~~~~P---vL~v~WsddgskVf~g-~-~Dk~-~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 40 DNLLAAGSWD----GTVRIWEVQNSGQLVP-KAQQSHDGP---VLDVCWSDDGSKVFSG-G-CDKQ-AKLWDLASGQVSQ 108 (347)
T ss_pred CceEEecccC----CceEEEEEecCCcccc-hhhhccCCC---eEEEEEccCCceEEee-c-cCCc-eEEEEccCCCeee
Confidence 4555566666 4999999998532111 112233322 2223445666555552 3 4554 9999999999999
Q ss_pred EEEecCc
Q 016751 352 IGVHLPY 358 (383)
Q Consensus 352 v~~~~~~ 358 (383)
|.....+
T Consensus 109 v~~Hd~p 115 (347)
T KOG0647|consen 109 VAAHDAP 115 (347)
T ss_pred eeecccc
Confidence 9877543
No 114
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=54.03 E-value=28 Score=20.56 Aligned_cols=23 Identities=9% Similarity=0.291 Sum_probs=16.6
Q ss_pred cEEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 325 KIFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 325 ~i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
.||+. . .++ .++.+|.+|++...
T Consensus 2 ~v~~~--~-~~g-~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 2 RVYVG--T-PDG-YLYALDAKTGKVLW 24 (38)
T ss_dssp EEEEE--T-TTS-EEEEEETTTTSEEE
T ss_pred EEEEe--C-CCC-EEEEEECCCCCEEE
Confidence 45555 4 555 49999999998654
No 115
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=53.33 E-value=2.8e+02 Score=28.81 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=27.7
Q ss_pred eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe-EEEEEEe
Q 016751 314 IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT-FKCIGVH 355 (383)
Q Consensus 314 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~-~~~v~~~ 355 (383)
.+..+++..+|..++. . .....+..||..++- ++++.+.
T Consensus 584 ~Ftti~ySaDG~~IlA--g-G~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 584 TFTTICYSADGKCILA--G-GESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred ceEEEEEcCCCCEEEe--c-CCcccEEEEECchhheeeeEEec
Confidence 4566778888888887 5 333369999999986 4566654
No 116
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=52.71 E-value=8.7 Score=35.42 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=32.6
Q ss_pred cCCCCCCHHHHHHHHhcCC--------hhhhHHhhccchhhHhhcCC
Q 016751 21 CSSFRLPEDVMIDIFLRLE--------VKNLARLRCVCKSWNTLLTS 59 (383)
Q Consensus 21 ~~~~~Lp~Dll~eIL~rLP--------~~~l~r~r~VcK~W~~li~s 59 (383)
+.++.||.++|.+|+.|+. -++...+..||+.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4677999999999999885 23788899999999997654
No 117
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=52.69 E-value=92 Score=27.59 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=40.0
Q ss_pred cEEEEEEeccCC----CCCCeEEEEEecCCCc---eeEEEEEe-eCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 016751 286 RSYELWVMKEYG----LTESWTKLYTIEKPQR---IWWPLGFT-ERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 286 ~~l~iW~l~~~~----~~~~W~~~~~i~~~~~---~~~~~~~~-~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v 352 (383)
..+.-|...|.. .+..|+.+..+..... .+..+... .+|.|++. . .+. .++..|++++++++.
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A--g-GD~-~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA--G-GDG-VIYQVDLEDGRIQRE 151 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe--c-CCe-EEEEEEecCCEEEEE
Confidence 477888886542 3567877543332111 24445555 45678887 5 455 499999999999875
No 118
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=52.64 E-value=1.9e+02 Score=26.57 Aligned_cols=100 Identities=12% Similarity=0.193 Sum_probs=59.7
Q ss_pred cEEEEEECCCC-----eeeEe---CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe
Q 016751 237 WLIVSFDFAKE-----IFQTV---MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI 308 (383)
Q Consensus 237 ~~il~fD~~~~-----~~~~i---~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 308 (383)
..|+.|+..+. ++..+ ..+ . ....+...+|+|.+..+ ..+.++.++.. ..+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~-g-----~V~ai~~~~~~lv~~~g------~~l~v~~l~~~---~~l~~~~~~ 126 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK-G-----PVTAICSFNGRLVVAVG------NKLYVYDLDNS---KTLLKKAFY 126 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES-S------EEEEEEETTEEEEEET------TEEEEEEEETT---SSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec-C-----cceEhhhhCCEEEEeec------CEEEEEEccCc---ccchhhhee
Confidence 67888888874 55544 233 1 24568888999555442 48999999873 248888777
Q ss_pred cCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEEe
Q 016751 309 EKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH 355 (383)
Q Consensus 309 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~~~ 355 (383)
.... .. ..+...++.+++|+. ..+-.++.||.+.+++..+.-.
T Consensus 127 ~~~~-~i--~sl~~~~~~I~vgD~-~~sv~~~~~~~~~~~l~~va~d 169 (321)
T PF03178_consen 127 DSPF-YI--TSLSVFKNYILVGDA-MKSVSLLRYDEENNKLILVARD 169 (321)
T ss_dssp -BSS-SE--EEEEEETTEEEEEES-SSSEEEEEEETTTE-EEEEEEE
T ss_pred cceE-EE--EEEeccccEEEEEEc-ccCEEEEEEEccCCEEEEEEec
Confidence 6653 12 233222445555333 2222577888877778877644
No 119
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=50.91 E-value=1.1e+02 Score=27.14 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=49.3
Q ss_pred EEEEEECCCCeeeEeCCCCCCC-CCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEE-EecCCCcee
Q 016751 238 LIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLY-TIEKPQRIW 315 (383)
Q Consensus 238 ~il~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~-~i~~~~~~~ 315 (383)
.-..||+.+++++.+.++ ... .. ....| -+|+|..+++... +...+++..-..++....|.+.. .|.... ++
T Consensus 47 ~s~~yD~~tn~~rpl~v~-td~FCS-gg~~L--~dG~ll~tGG~~~-G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R-WY 120 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQ-TDTFCS-GGAFL--PDGRLLQTGGDND-GNKAIRIFTPCTSDGTCDWTESPNDMQSGR-WY 120 (243)
T ss_pred EEEEEecCCCcEEeccCC-CCCccc-CcCCC--CCCCEEEeCCCCc-cccceEEEecCCCCCCCCceECcccccCCC-cc
Confidence 356699999999988766 322 11 11122 3688888777654 23445544433322345688754 455544 33
Q ss_pred EEEEEeeCCcEEEE
Q 016751 316 WPLGFTERGKIFIR 329 (383)
Q Consensus 316 ~~~~~~~~g~i~~~ 329 (383)
--.....+|+++++
T Consensus 121 pT~~~L~DG~vlIv 134 (243)
T PF07250_consen 121 PTATTLPDGRVLIV 134 (243)
T ss_pred ccceECCCCCEEEE
Confidence 33444567888888
No 120
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=49.74 E-value=2.1e+02 Score=26.17 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=96.5
Q ss_pred cCceEEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeec
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIA 197 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~ 197 (383)
.++-.++... .++.+.|||-.|..-.. +|-+... .+.-.|.|+ + .| |-+..-...+-||++.+..=+...
T Consensus 65 ~Dsr~ivSaS--qDGklIvWDs~TtnK~haipl~s~W--VMtCA~sPS---g-~~-VAcGGLdN~Csiy~ls~~d~~g~~ 135 (343)
T KOG0286|consen 65 TDSRRIVSAS--QDGKLIVWDSFTTNKVHAIPLPSSW--VMTCAYSPS---G-NF-VACGGLDNKCSIYPLSTRDAEGNV 135 (343)
T ss_pred CCcCeEEeec--cCCeEEEEEcccccceeEEecCcee--EEEEEECCC---C-Ce-EEecCcCceeEEEecccccccccc
Confidence 3344444442 77889999998855444 4433322 134456665 2 22 333333678899999854211111
Q ss_pred ---cCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeE
Q 016751 198 ---YGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYL 274 (383)
Q Consensus 198 ---~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L 274 (383)
..++....+..+ +-|++ --+-+.+.+ .....-.|+.+.+-... +- .+..+-....|...+++.
T Consensus 136 ~v~r~l~gHtgylSc----C~f~d-D~~ilT~SG-------D~TCalWDie~g~~~~~-f~-GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSC----CRFLD-DNHILTGSG-------DMTCALWDIETGQQTQV-FH-GHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred eeeeeecCccceeEE----EEEcC-CCceEecCC-------CceEEEEEcccceEEEE-ec-CCcccEEEEecCCCCCCe
Confidence 012211111111 45555 333444433 23445567766644321 10 111111222333446777
Q ss_pred EEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 275 CVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 275 ~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
++-+..+. .-.+|-+.+.. =.+ .++-...-+..+.+.++|.-+.. +-++. ..-.||++.+.
T Consensus 202 FvSg~cD~----~aklWD~R~~~----c~q--tF~ghesDINsv~ffP~G~afat--GSDD~-tcRlyDlRaD~ 262 (343)
T KOG0286|consen 202 FVSGGCDK----SAKLWDVRSGQ----CVQ--TFEGHESDINSVRFFPSGDAFAT--GSDDA-TCRLYDLRADQ 262 (343)
T ss_pred EEeccccc----ceeeeeccCcc----eeE--eecccccccceEEEccCCCeeee--cCCCc-eeEEEeecCCc
Confidence 77776664 77888887621 111 22211112555777788877776 42344 48889999864
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.83 E-value=2.3e+02 Score=26.16 Aligned_cols=134 Identities=15% Similarity=0.142 Sum_probs=66.9
Q ss_pred CceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc-eeeeccCCCceeeeccCc
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS-WKNIAYGFPRSIEINRSH 210 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~-W~~~~~~~p~~~~~~~~~ 210 (383)
+..+..||.++++..-.-+..... ..+-+.+. ++.|.|+. ...+.||.+++.+ -+.+. .|.... .
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~---Gd~F~v~~---~~~i~i~q~d~A~v~~~i~--~~~r~l--~-- 213 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQ---GDHFVVSG---RNKIDIYQLDNASVFREIE--NPKRIL--C-- 213 (362)
T ss_pred CceeeeehhhcCccceeeccCCcc--eeeEEcCC---CCEEEEEe---ccEEEEEecccHhHhhhhh--ccccce--e--
Confidence 334556666665543332222211 22455665 56666666 6789999998753 23333 331111 1
Q ss_pred ccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEE
Q 016751 211 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYEL 290 (383)
Q Consensus 211 ~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~i 290 (383)
..+.++..-..++++ ..|..+|..+..--..-+-=..+. ...........=+++..... ..+.|
T Consensus 214 ---~~~l~~~~L~vG~d~--------~~i~~~D~ds~~~~~~~~AH~~RV--K~i~~~~~~~~~~lvTaSSD---G~I~v 277 (362)
T KOG0294|consen 214 ---ATFLDGSELLVGGDN--------EWISLKDTDSDTPLTEFLAHENRV--KDIASYTNPEHEYLVTASSD---GFIKV 277 (362)
T ss_pred ---eeecCCceEEEecCC--------ceEEEeccCCCccceeeecchhhe--eeeEEEecCCceEEEEeccC---ceEEE
Confidence 445566555555554 688899988722111100000010 11121222234455555554 59999
Q ss_pred EEecc
Q 016751 291 WVMKE 295 (383)
Q Consensus 291 W~l~~ 295 (383)
|.++-
T Consensus 278 Wd~~~ 282 (362)
T KOG0294|consen 278 WDIDM 282 (362)
T ss_pred EEccc
Confidence 99875
No 122
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=45.45 E-value=2.5e+02 Score=25.87 Aligned_cols=143 Identities=9% Similarity=0.179 Sum_probs=56.4
Q ss_pred EEEEcCC--CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCC
Q 016751 184 EVYSLRS--NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTD 261 (383)
Q Consensus 184 ~vyss~t--~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~ 261 (383)
.||...+ .+|+......+....+.-. +|..+|.--|+.+.. ..|+.-.=.-++|+.++++ .....
T Consensus 38 ~il~T~DGG~tW~~~~~~~~~~~~~~l~----~I~f~~~~g~ivG~~--------g~ll~T~DgG~tW~~v~l~-~~lpg 104 (302)
T PF14870_consen 38 TILKTTDGGKTWQPVSLDLDNPFDYHLN----SISFDGNEGWIVGEP--------GLLLHTTDGGKTWERVPLS-SKLPG 104 (302)
T ss_dssp EEEEESSTTSS-EE-----S-----EEE----EEEEETTEEEEEEET--------TEEEEESSTTSS-EE-----TT-SS
T ss_pred EEEEECCCCccccccccCCCccceeeEE----EEEecCCceEEEcCC--------ceEEEecCCCCCcEEeecC-CCCCC
Confidence 4555544 4898776333322111111 444444344555554 3555555567899998766 43322
Q ss_pred CCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEE
Q 016751 262 DADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLL 340 (383)
Q Consensus 262 ~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 340 (383)
. ...+... ++...++.... .|+.-.+. ...|..+..-.... ..-+....+|.++.+ . ..+..+.
T Consensus 105 s-~~~i~~l~~~~~~l~~~~G-------~iy~T~Dg--G~tW~~~~~~~~gs--~~~~~r~~dG~~vav--s-~~G~~~~ 169 (302)
T PF14870_consen 105 S-PFGITALGDGSAELAGDRG-------AIYRTTDG--GKTWQAVVSETSGS--INDITRSSDGRYVAV--S-SRGNFYS 169 (302)
T ss_dssp --EEEEEEEETTEEEEEETT---------EEEESST--TSSEEEEE-S------EEEEEE-TTS-EEEE--E-TTSSEEE
T ss_pred C-eeEEEEcCCCcEEEEcCCC-------cEEEeCCC--CCCeeEcccCCcce--eEeEEECCCCcEEEE--E-CcccEEE
Confidence 1 2233333 45555554322 35555553 36798765422222 222223356666555 4 3333344
Q ss_pred EEeCCCCeEEEEEE
Q 016751 341 VYNPHSDTFKCIGV 354 (383)
Q Consensus 341 ~yd~~t~~~~~v~~ 354 (383)
..|+....|+....
T Consensus 170 s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 170 SWDPGQTTWQPHNR 183 (302)
T ss_dssp EE-TT-SS-EEEE-
T ss_pred EecCCCccceEEcc
Confidence 55666555655543
No 123
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=44.73 E-value=2.1e+02 Score=28.75 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=55.1
Q ss_pred eEEEEEeeccCCCCCCCcEEEEEECCCCeeeE-eCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCC
Q 016751 220 SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGL 298 (383)
Q Consensus 220 ~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~ 298 (383)
-||..+... .|..||+..++|-. +..- .... ....+.+++ .|..+++.+ ..++.|-...-
T Consensus 147 Dly~~gsg~---------evYRlNLEqGrfL~P~~~~-~~~l--N~v~in~~h-gLla~Gt~~----g~VEfwDpR~k-- 207 (703)
T KOG2321|consen 147 DLYLVGSGS---------EVYRLNLEQGRFLNPFETD-SGEL--NVVSINEEH-GLLACGTED----GVVEFWDPRDK-- 207 (703)
T ss_pred cEEEeecCc---------ceEEEEccccccccccccc-cccc--eeeeecCcc-ceEEecccC----ceEEEecchhh--
Confidence 466655544 89999999999943 2221 1110 122222233 444444444 48888877541
Q ss_pred CCCeEEEEEecCC------Cc-----eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 016751 299 TESWTKLYTIEKP------QR-----IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 299 ~~~W~~~~~i~~~------~~-----~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v 352 (383)
+.+..+... .. ....+.+.++|.-+-+|+. .+ .++.||+++.+--.+
T Consensus 208 ----srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--~G-~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 208 ----SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--TG-SVLIYDLRASKPLLV 265 (703)
T ss_pred ----hhheeeecccccCCCccccccCcceEEEecCCceeEEeecc--CC-cEEEEEcccCCceee
Confidence 111122111 10 2334455555654555333 44 499999998765444
No 124
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=44.18 E-value=47 Score=29.68 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHhcCC-hhhhHHhhccchhhHhhcCC
Q 016751 22 SSFRLPEDVMIDIFLRLE-VKNLARLRCVCKSWNTLLTS 59 (383)
Q Consensus 22 ~~~~Lp~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~s 59 (383)
...+||.+++.+||.||| -.+|..++-|-..-..++.+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 457899999999999999 68888888776555555543
No 125
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=43.53 E-value=4.9e+02 Score=28.77 Aligned_cols=211 Identities=10% Similarity=0.086 Sum_probs=104.6
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceeecCCCCC-C-----------CCceeEEEeccCCCCCCeEEEEEEe-cC
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSL-N-----------PRYLGFGVNSVSGHLDDFKVVTISV-NA 181 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~-~-----------~~~~~~g~d~~~~~~~~ykVv~~~~-~~ 181 (383)
.+++.+|.|.+.+. ...++.++|+..+....+..... . ....++.+|+. .+ . ++.... ..
T Consensus 574 avd~~~g~lyVaDs--~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~---gn-~-LYVaDt~n~ 646 (1057)
T PLN02919 574 AIDLLNNRLFISDS--NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK---KN-L-LYVADTENH 646 (1057)
T ss_pred EEECCCCeEEEEEC--CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC---CC-E-EEEEeCCCc
Confidence 35556888888774 67789999987655444443111 0 01166677664 32 1 222111 34
Q ss_pred eEEEEEcCCCceeeeccC------CCce-----eeeccCcccceeEE---CceEEEEEeeccCCCCCCCcEEEEEECCCC
Q 016751 182 DAEVYSLRSNSWKNIAYG------FPRS-----IEINRSHINSSVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKE 247 (383)
Q Consensus 182 ~~~vyss~t~~W~~~~~~------~p~~-----~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~~~il~fD~~~~ 247 (383)
.+.+++..++.=+.+... .... .....+. ++.+ +|.+|+..... ..|..||..+.
T Consensus 647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~---gVa~dp~~g~LyVad~~~--------~~I~v~d~~~g 715 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW---DVCFEPVNEKVYIAMAGQ--------HQIWEYNISDG 715 (1057)
T ss_pred eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe---EEEEecCCCeEEEEECCC--------CeEEEEECCCC
Confidence 566666655432222100 0000 0001111 3433 67888876554 57999999877
Q ss_pred eeeEeCCC-----CCC-----CCCCCceEEEEe-C-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEE---------
Q 016751 248 IFQTVMMP-----YDL-----STDDADKYLNVF-D-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLY--------- 306 (383)
Q Consensus 248 ~~~~i~lP-----~~~-----~~~~~~~~l~~~-~-g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~--------- 306 (383)
....+.-. ... ..-..-..++.. + +.|+++.... ..+.+|-++... ..+. ..
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n----~~Irv~D~~tg~--~~~~-~gg~~~~~~~l 788 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES----SSIRALDLKTGG--SRLL-AGGDPTFSDNL 788 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC----CeEEEEECCCCc--EEEE-EecccccCccc
Confidence 66543110 000 000011224443 2 4588877654 477777665321 1111 10
Q ss_pred -EecCC------CceeEE--EEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 016751 307 -TIEKP------QRIWWP--LGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 307 -~i~~~------~~~~~~--~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~ 353 (383)
.+... .....| +++..+|++|+. ...++ .+..+|++++....+.
T Consensus 789 ~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA--Ds~N~-rIrviD~~tg~v~tia 841 (1057)
T PLN02919 789 FKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA--DSYNH-KIKKLDPATKRVTTLA 841 (1057)
T ss_pred ccccCCCCchhhhhccCCceeeEeCCCcEEEE--ECCCC-EEEEEECCCCeEEEEe
Confidence 00000 001233 345567889888 52344 5999999999887653
No 126
>PF15408 PH_7: Pleckstrin homology domain
Probab=43.36 E-value=13 Score=26.60 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=20.4
Q ss_pred hhhhHHhhccchhhHhhcCChHHHH
Q 016751 40 VKNLARLRCVCKSWNTLLTSKTFVE 64 (383)
Q Consensus 40 ~~~l~r~r~VcK~W~~li~s~~F~~ 64 (383)
++.....+-|||.|-.+..+|.|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 3456667889999999999999853
No 127
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=43.11 E-value=3.2e+02 Score=26.44 Aligned_cols=105 Identities=18% Similarity=0.332 Sum_probs=61.7
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECC-CCeeeEeCCCCCC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFA-KEIFQTVMMPYDL 258 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~-~~~~~~i~lP~~~ 258 (383)
...+.||++.+.. .+. ..|. ....-. .+...-.=||+.... ....|..+|++ .+.|..+.+| ..
T Consensus 368 d~~vkiwdlks~~--~~a-~Fpg--ht~~vk---~i~FsENGY~Lat~a------dd~~V~lwDLRKl~n~kt~~l~-~~ 432 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVA-KFPG--HTGPVK---AISFSENGYWLATAA------DDGSVKLWDLRKLKNFKTIQLD-EK 432 (506)
T ss_pred CceEEEEEcCCcc--ccc-cCCC--CCCcee---EEEeccCceEEEEEe------cCCeEEEEEehhhcccceeecc-cc
Confidence 5578889888765 333 3333 111111 556666668988765 34569999997 4566777777 53
Q ss_pred CCCCCceEEEEe--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC
Q 016751 259 STDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP 311 (383)
Q Consensus 259 ~~~~~~~~l~~~--~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 311 (383)
-.. .-... .|....+. + ..+.|...+. .+.+|.+.......
T Consensus 433 ~~v----~s~~fD~SGt~L~~~---g---~~l~Vy~~~k--~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 433 KEV----NSLSFDQSGTYLGIA---G---SDLQVYICKK--KTKSWTEIKELADH 475 (506)
T ss_pred ccc----eeEEEcCCCCeEEee---c---ceeEEEEEec--ccccceeeehhhhc
Confidence 211 11122 24433333 2 5788888875 35789998777653
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=41.54 E-value=4e+02 Score=27.20 Aligned_cols=112 Identities=9% Similarity=0.165 Sum_probs=64.2
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe--CCCCCCCCCCCceEEEEe--CCeEEEEEecCCCCccEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV--MMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYE 289 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i--~lP~~~~~~~~~~~l~~~--~g~L~~v~~~~~~~~~~l~ 289 (383)
....++.+-++.... ...++.|+..+.++..+ .-| ....+ .-..++++ ++.|+++... ..+.
T Consensus 435 ~ftid~~k~~~~s~~-------~~~le~~el~~ps~kel~~~~~-~~~~~-~I~~l~~SsdG~yiaa~~t~-----g~I~ 500 (691)
T KOG2048|consen 435 SFTIDKNKLFLVSKN-------IFSLEEFELETPSFKELKSIQS-QAKCP-SISRLVVSSDGNYIAAISTR-----GQIF 500 (691)
T ss_pred EEEecCceEEEEecc-------cceeEEEEecCcchhhhhcccc-ccCCC-cceeEEEcCCCCEEEEEecc-----ceEE
Confidence 456666665555522 35899999999999776 233 32222 23344443 4567777643 3788
Q ss_pred EEEeccCCCCCCeEEEEEecCCCceeEEEEEe--eCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 290 LWVMKEYGLTESWTKLYTIEKPQRIWWPLGFT--ERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 290 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~--~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
+|.++.- ...|.+ -+++. .....++. ..+.+++. . .+.+ ++.||++.+++
T Consensus 501 v~nl~~~--~~~~l~-~rln~---~vTa~~~~~~~~~~lvva--t-s~nQ-v~efdi~~~~l 552 (691)
T KOG2048|consen 501 VYNLETL--ESHLLK-VRLNI---DVTAAAFSPFVRNRLVVA--T-SNNQ-VFEFDIEARNL 552 (691)
T ss_pred EEEcccc--eeecch-hccCc---ceeeeeccccccCcEEEE--e-cCCe-EEEEecchhhh
Confidence 8888762 233443 12221 13333332 34577777 5 5664 99999965543
No 129
>PRK04043 tolB translocation protein TolB; Provisional
Probab=41.25 E-value=3.4e+02 Score=26.25 Aligned_cols=191 Identities=12% Similarity=0.135 Sum_probs=99.5
Q ss_pred CceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe--cCeEEEEEcCCCceeeeccCCCceeeeccC
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV--NADAEVYSLRSNSWKNIAYGFPRSIEINRS 209 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~--~~~~~vyss~t~~W~~~~~~~p~~~~~~~~ 209 (383)
..++++.|..|++...|...+... ....+.|. +..-++.... ...+++++..++.++.+. ..+.. ....
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~--~~~~~SPD----G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT-~~~~~--d~~p 282 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGML--VVSDVSKD----GSKLLLTMAPKGQPDIYLYDTNTKTLTQIT-NYPGI--DVNG 282 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcE--EeeEECCC----CCEEEEEEccCCCcEEEEEECCCCcEEEcc-cCCCc--cCcc
Confidence 568999999999988886533211 11223222 2222222222 467888898899998876 33321 1110
Q ss_pred cccceeEECc-eEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCC--cc
Q 016751 210 HINSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNT--FR 286 (383)
Q Consensus 210 ~~~~~v~~~G-~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~--~~ 286 (383)
...-+| .+|+..... ....|...|+.+...+.+..- .. ........++.|.++.....+. ..
T Consensus 283 ----~~SPDG~~I~F~Sdr~------g~~~Iy~~dl~~g~~~rlt~~--g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~ 347 (419)
T PRK04043 283 ----NFVEDDKRIVFVSDRL------GYPNIFMKKLNSGSVEQVVFH--GK---NNSSVSTYKNYIVYSSRETNNEFGKN 347 (419)
T ss_pred ----EECCCCCEEEEEECCC------CCceEEEEECCCCCeEeCccC--CC---cCceECCCCCEEEEEEcCCCcccCCC
Confidence 233356 577766543 235799999998887654221 11 1122222233454444322110 12
Q ss_pred EEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc-EEEEEEeeCCc-eEEEEEeCCCCeEEEEEE
Q 016751 287 SYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGG-YGLLVYNPHSDTFKCIGV 354 (383)
Q Consensus 287 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~-~~~~~yd~~t~~~~~v~~ 354 (383)
..+|++++-.+ +.+..+..-.. ...| .+..+|+ |++. ...++ ..+...++..+.-..+..
T Consensus 348 ~~~I~v~d~~~--g~~~~LT~~~~---~~~p-~~SPDG~~I~f~--~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 348 TFNLYLISTNS--DYIRRLTANGV---NQFP-RFSSDGGSIMFI--KYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CcEEEEEECCC--CCeEECCCCCC---cCCe-EECCCCCEEEEE--EccCCcEEEEEEecCCCeeEEeec
Confidence 36788887432 33444333211 1223 3455664 5555 31222 258889998876666644
No 130
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=40.25 E-value=40 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=23.1
Q ss_pred ccCCCCCCHHHHHHHHhcCChhhhHH
Q 016751 20 KCSSFRLPEDVMIDIFLRLEVKNLAR 45 (383)
Q Consensus 20 ~~~~~~Lp~Dll~eIL~rLP~~~l~r 45 (383)
.+.|..||.|+-..||..|+-++|..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHH
Confidence 46799999999999999999888864
No 131
>PTZ00421 coronin; Provisional
Probab=38.66 E-value=4.1e+02 Score=26.41 Aligned_cols=202 Identities=10% Similarity=0.086 Sum_probs=89.6
Q ss_pred CceEEEeecCCCCceEEEEccCccceeecC--C---CCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCce
Q 016751 120 NGVLCFCSNGSDRSLIYLWNPLIKKYMTLP--R---PSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSW 193 (383)
Q Consensus 120 ~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP--~---~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W 193 (383)
+|-+++... .++.+.|||-.++....-. + ..... ....+.+.|. ..+ .++.......+.||+.+++.-
T Consensus 87 d~~~LaSgS--~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~---~~~-iLaSgs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 87 DPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS---AMN-VLASAGADMVVNVWDVERGKA 160 (493)
T ss_pred CCCEEEEEe--CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC---CCC-EEEEEeCCCEEEEEECCCCeE
Confidence 454444432 5778888886554221100 0 01111 1144566664 332 233333366889999987642
Q ss_pred e-eeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeee-EeCCCCCCCCCCCceEEEEeC
Q 016751 194 K-NIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNVFD 271 (383)
Q Consensus 194 ~-~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~~ 271 (383)
. .+. ......... ...-+|.+...+..+ ..|-.+|+.+..-. .+... ... .....+...+
T Consensus 161 ~~~l~-~h~~~V~sl------a~spdG~lLatgs~D--------g~IrIwD~rsg~~v~tl~~H-~~~--~~~~~~w~~~ 222 (493)
T PTZ00421 161 VEVIK-CHSDQITSL------EWNLDGSLLCTTSKD--------KKLNIIDPRDGTIVSSVEAH-ASA--KSQRCLWAKR 222 (493)
T ss_pred EEEEc-CCCCceEEE------EEECCCCEEEEecCC--------CEEEEEECCCCcEEEEEecC-CCC--cceEEEEcCC
Confidence 2 111 111111100 122356655544433 58889999876532 22211 111 0111111223
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 272 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 272 g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
+.+.+..+........+.+|-+.... .... ...+.... ......+..++.+++.+ .+.++ .+.+||+.+++...
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~~--~p~~-~~~~d~~~-~~~~~~~d~d~~~L~lg-gkgDg-~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKMA--SPYS-TVDLDQSS-ALFIPFFDEDTNLLYIG-SKGEG-NIRCFELMNERLTF 296 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCCC--Ccee-EeccCCCC-ceEEEEEcCCCCEEEEE-EeCCC-eEEEEEeeCCceEE
Confidence 33333333221123689999987532 1111 11222211 12222334455555541 21244 48899998877544
No 132
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=38.35 E-value=2.9e+02 Score=25.12 Aligned_cols=63 Identities=10% Similarity=0.316 Sum_probs=40.0
Q ss_pred cCeEEEEEcCCCceeeeccCCCceee---eccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIE---INRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM 253 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~---~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~ 253 (383)
...+.+|+..+.+|......+..... +.... -+++.|.+-.-. .....+..||+.+.+|..+.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~---~Llv~G~ft~~~--------~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN---QLLVGGNFTLNG--------TNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCC---EEEEEEeeEECC--------CCceeEEEEecCCCeeeecC
Confidence 35778999999999988734322211 11111 355555444322 23568999999999998774
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.89 E-value=2.6e+02 Score=25.74 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=48.2
Q ss_pred CceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-----eeEEEEE-ee----CCcEEEEEEe
Q 016751 263 ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-----IWWPLGF-TE----RGKIFIRGEC 332 (383)
Q Consensus 263 ~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~-~~----~g~i~~~~~~ 332 (383)
.....+...-.|-++..... ..++|...-+-.+-.+|.++++|..-.. .....++ +. ...++.+| .
T Consensus 116 ~DV~FaP~hlGLklA~~~aD---G~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvg-s 191 (361)
T KOG2445|consen 116 TDVKFAPKHLGLKLAAASAD---GILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVG-S 191 (361)
T ss_pred eEEEecchhcceEEEEeccC---cEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEE-c
Confidence 44555555555666665554 5899988876555678999988862110 0111111 11 11233331 2
Q ss_pred eCC------ceEEEEEeCCCCeEEEEE
Q 016751 333 RHG------GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 333 ~~~------~~~~~~yd~~t~~~~~v~ 353 (383)
+. .-.++-||-..++|.++.
T Consensus 192 -~e~a~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 192 -DEDAPHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred -ccCCccccceEEEEecCCcceeeeeh
Confidence 22 116888888888998883
No 134
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=37.18 E-value=3.1e+02 Score=25.38 Aligned_cols=81 Identities=12% Similarity=0.235 Sum_probs=42.7
Q ss_pred eeEE-CceEEEEEeeccCCCCCC-CcEEEEEECC-CCeeeEe-CCCCCCCCCCCceEEEEe-CCeEEEEEecCCCCccEE
Q 016751 214 SVFL-NGSVHWCARFSCYHDNSC-PWLIVSFDFA-KEIFQTV-MMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSY 288 (383)
Q Consensus 214 ~v~~-~G~lYw~~~~~~~~~~~~-~~~il~fD~~-~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l 288 (383)
+|.. ||.|-+-.... ..... ...++.|... .++|..- -+|...| ..+.++|. +|+|.|+...+. ..-
T Consensus 126 GV~m~dGTLVFPv~a~--~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC---~~psv~EWe~gkLlM~~~c~~---g~r 197 (310)
T PF13859_consen 126 GVVMEDGTLVFPVQAT--KKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGC---SDPSVVEWEDGKLLMMTACDD---GRR 197 (310)
T ss_dssp -EE-TTS-EEEEEEEE--ETT---EEEEEEEESSTTSS-EE-S----TT----EEEEEEEE-TTEEEEEEE-TT---S--
T ss_pred ceEEcCCCEEEEEeee--ccCccceEEEEEEECCCccceEeccccCCCCc---ceEEEEeccCCeeEEEEeccc---ceE
Confidence 5666 78776655432 12233 3677888877 6788764 3321444 67899999 799999987765 333
Q ss_pred EEEEeccCCCCCCeEE
Q 016751 289 ELWVMKEYGLTESWTK 304 (383)
Q Consensus 289 ~iW~l~~~~~~~~W~~ 304 (383)
+|.+= .+....|++
T Consensus 198 rVYeS--~DmG~tWte 211 (310)
T PF13859_consen 198 RVYES--GDMGTTWTE 211 (310)
T ss_dssp -EEEE--SSTTSS-EE
T ss_pred EEEEE--cccceehhh
Confidence 44433 334567987
No 135
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=36.06 E-value=63 Score=25.23 Aligned_cols=21 Identities=0% Similarity=0.124 Sum_probs=18.0
Q ss_pred EEEEEeCCCCeEEEEEEecCc
Q 016751 338 GLLVYNPHSDTFKCIGVHLPY 358 (383)
Q Consensus 338 ~~~~yd~~t~~~~~v~~~~~~ 358 (383)
.++.||..+++|++.+++|..
T Consensus 30 ~vY~f~~~~~~W~K~~iEG~L 50 (122)
T PF06058_consen 30 VVYKFDHETNEWEKTDIEGTL 50 (122)
T ss_dssp EEEEEETTTTEEEEEEEEEEE
T ss_pred EEEeecCCCCcEeecCcEeeE
Confidence 478888999999999998864
No 136
>PTZ00421 coronin; Provisional
Probab=35.62 E-value=4.5e+02 Score=26.08 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=37.3
Q ss_pred eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 273 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 273 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
.+.+....+ ..+.||-++.. .....+.........+.+..+|.+++. ...++ .+.+||+++++.
T Consensus 139 ~iLaSgs~D----gtVrIWDl~tg------~~~~~l~~h~~~V~sla~spdG~lLat--gs~Dg-~IrIwD~rsg~~ 202 (493)
T PTZ00421 139 NVLASAGAD----MVVNVWDVERG------KAVEVIKCHSDQITSLEWNLDGSLLCT--TSKDK-KLNIIDPRDGTI 202 (493)
T ss_pred CEEEEEeCC----CEEEEEECCCC------eEEEEEcCCCCceEEEEEECCCCEEEE--ecCCC-EEEEEECCCCcE
Confidence 444444444 58999998752 223333321112444556667777666 42455 499999998764
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=35.49 E-value=3.1e+02 Score=24.06 Aligned_cols=180 Identities=13% Similarity=0.035 Sum_probs=82.8
Q ss_pred CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCc
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSH 210 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~ 210 (383)
.++.+.++|+.|++....-..... ..++.+++. + .+-++.......+.+|+..+++....- ....... ..
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~~--~~~l~~~~d---g-~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~---~~ 78 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQR--PRGITLSKD---G-KLLYVCASDSDTIQVIDLATGEVIGTL-PSGPDPE---LF 78 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCCC--CCceEECCC---C-CEEEEEECCCCeEEEEECCCCcEEEec-cCCCCcc---EE
Confidence 466788888887764432221111 123555553 2 222222222567889998887654311 1111110 00
Q ss_pred ccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCCCCceEEEE-eCCeEEEEEecCCCCccE
Q 016751 211 INSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNV-FDGYLCVFATIPNNTFRS 287 (383)
Q Consensus 211 ~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~-~~g~L~~v~~~~~~~~~~ 287 (383)
.+.-+|. +|..+... ..+..+|+.+.+- ..++.+ ... ..+.. -+|.+.++..... ..
T Consensus 79 ---~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~~~~~~~~~-~~~-----~~~~~~~dg~~l~~~~~~~---~~ 138 (300)
T TIGR03866 79 ---ALHPNGKILYIANEDD--------NLVTVIDIETRKVLAEIPVG-VEP-----EGMAVSPDGKIVVNTSETT---NM 138 (300)
T ss_pred ---EECCCCCEEEEEcCCC--------CeEEEEECCCCeEEeEeeCC-CCc-----ceEEECCCCCEEEEEecCC---Ce
Confidence 2223454 44332222 4799999987542 222322 111 12222 2466655554432 23
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 288 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 288 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
+.+|..+. ......+.... ....+.+..+|..++.. ...++ .+..||+++++.
T Consensus 139 ~~~~d~~~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~-~~~~~-~v~i~d~~~~~~ 191 (300)
T TIGR03866 139 AHFIDTKT------YEIVDNVLVDQ-RPRFAEFTADGKELWVS-SEIGG-TVSVIDVATRKV 191 (300)
T ss_pred EEEEeCCC------CeEEEEEEcCC-CccEEEECCCCCEEEEE-cCCCC-EEEEEEcCccee
Confidence 44443322 22222232221 12334556667655441 21244 499999998764
No 138
>PRK00178 tolB translocation protein TolB; Provisional
Probab=34.79 E-value=4.2e+02 Score=25.41 Aligned_cols=188 Identities=11% Similarity=-0.023 Sum_probs=91.8
Q ss_pred CceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe--cCeEEEEEcCCCceeeeccCCCceeeeccC
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV--NADAEVYSLRSNSWKNIAYGFPRSIEINRS 209 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~--~~~~~vyss~t~~W~~~~~~~p~~~~~~~~ 209 (383)
..+++++|..+++...+...+... ....+.|. +++-++.... ...+++++..++..+.+. ..+... ..
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~--~~~~~SpD----G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt-~~~~~~--~~- 291 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLN--GAPAWSPD----GSKLAFVLSKDGNPEIYVMDLASRQLSRVT-NHPAID--TE- 291 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCc--CCeEECCC----CCEEEEEEccCCCceEEEEECCCCCeEEcc-cCCCCc--CC-
Confidence 457999999999888776544211 12333332 2222222222 457788899998887665 222110 00
Q ss_pred cccceeEECc-eEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEE
Q 016751 210 HINSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSY 288 (383)
Q Consensus 210 ~~~~~v~~~G-~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l 288 (383)
. ...-+| .+++..... ....|..+|+.+.....+... .... ........++.|++..... ...
T Consensus 292 ~---~~spDg~~i~f~s~~~------g~~~iy~~d~~~g~~~~lt~~-~~~~--~~~~~Spdg~~i~~~~~~~----~~~ 355 (430)
T PRK00178 292 P---FWGKDGRTLYFTSDRG------GKPQIYKVNVNGGRAERVTFV-GNYN--ARPRLSADGKTLVMVHRQD----GNF 355 (430)
T ss_pred e---EECCCCCEEEEEECCC------CCceEEEEECCCCCEEEeecC-CCCc--cceEECCCCCEEEEEEccC----Cce
Confidence 0 122245 455554322 234788899988877665432 1110 1122222234555544322 245
Q ss_pred EEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc-EEEEEEeeCC-ceEEEEEeCCCCeEEEEE
Q 016751 289 ELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHG-GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 289 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~-~~~~~~yd~~t~~~~~v~ 353 (383)
.||.++-.. .....+..-.. ...+ .+..+|+ +++. ...+ ...++..+...+..+.+.
T Consensus 356 ~l~~~dl~t--g~~~~lt~~~~---~~~p-~~spdg~~i~~~--~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 356 HVAAQDLQR--GSVRILTDTSL---DESP-SVAPNGTMLIYA--TRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred EEEEEECCC--CCEEEccCCCC---CCCc-eECCCCCEEEEE--EecCCceEEEEEECCCCceEECc
Confidence 676666422 23333322111 1223 3455664 4444 2122 225888888766555553
No 139
>PRK04043 tolB translocation protein TolB; Provisional
Probab=34.65 E-value=4.3e+02 Score=25.53 Aligned_cols=102 Identities=9% Similarity=0.071 Sum_probs=56.8
Q ss_pred cEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 016751 237 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 314 (383)
Q Consensus 237 ~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 314 (383)
..|..+|+.+..-+.+ ..+ ... ..... .-+| +|.+..... ..-+||.++-.+ ..+.++...+...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~-g~~---~~~~~-SPDG~~la~~~~~~----g~~~Iy~~dl~~--g~~~~LT~~~~~d-- 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ-GML---VVSDV-SKDGSKLLLTMAPK----GQPDIYLYDTNT--KTLTQITNYPGID-- 279 (419)
T ss_pred CEEEEEECCCCcEEEEecCC-CcE---EeeEE-CCCCCEEEEEEccC----CCcEEEEEECCC--CcEEEcccCCCcc--
Confidence 4899999988877666 433 211 11122 2244 565554333 356888887432 3466554333211
Q ss_pred eEEEEEeeCC-cEEEEEEee-CCceEEEEEeCCCCeEEEEEE
Q 016751 315 WWPLGFTERG-KIFIRGECR-HGGYGLLVYNPHSDTFKCIGV 354 (383)
Q Consensus 315 ~~~~~~~~~g-~i~~~~~~~-~~~~~~~~yd~~t~~~~~v~~ 354 (383)
..+ .+..+| .|++. .. .+...++.+|+.+++.+++-.
T Consensus 280 ~~p-~~SPDG~~I~F~--Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 280 VNG-NFVEDDKRIVFV--SDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred Ccc-EECCCCCEEEEE--ECCCCCceEEEEECCCCCeEeCcc
Confidence 222 344556 67777 41 122269999999998877633
No 140
>PRK04792 tolB translocation protein TolB; Provisional
Probab=33.05 E-value=4.7e+02 Score=25.47 Aligned_cols=189 Identities=7% Similarity=-0.037 Sum_probs=92.2
Q ss_pred CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe--cCeEEEEEcCCCceeeeccCCCceeeecc
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV--NADAEVYSLRSNSWKNIAYGFPRSIEINR 208 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~--~~~~~vyss~t~~W~~~~~~~p~~~~~~~ 208 (383)
...++++.|..+++...+...+... ....+.|. + ++-++.... ...+++++.+++..+.+. ...... .
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g~~--~~~~wSPD---G-~~La~~~~~~g~~~Iy~~dl~tg~~~~lt-~~~~~~---~ 309 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPGIN--GAPRFSPD---G-KKLALVLSKDGQPEIYVVDIATKALTRIT-RHRAID---T 309 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCCCc--CCeeECCC---C-CEEEEEEeCCCCeEEEEEECCCCCeEECc-cCCCCc---c
Confidence 3457999999998877765443211 22344443 2 222222222 446788888888887665 221100 0
Q ss_pred CcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccE
Q 016751 209 SHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRS 287 (383)
Q Consensus 209 ~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~ 287 (383)
.. ...-+|. +++..... ....|..+|+.+.+...+... .... .......-+..|++.... . ..
T Consensus 310 ~p---~wSpDG~~I~f~s~~~------g~~~Iy~~dl~~g~~~~Lt~~-g~~~--~~~~~SpDG~~l~~~~~~-~---g~ 373 (448)
T PRK04792 310 EP---SWHPDGKSLIFTSERG------GKPQIYRVNLASGKVSRLTFE-GEQN--LGGSITPDGRSMIMVNRT-N---GK 373 (448)
T ss_pred ce---EECCCCCEEEEEECCC------CCceEEEEECCCCCEEEEecC-CCCC--cCeeECCCCCEEEEEEec-C---Cc
Confidence 00 2223553 44443322 235789999988887766322 1110 112222222345554433 2 46
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc-EEEEEEeeCCc-eEEEEEeCCCCeEEEEE
Q 016751 288 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGG-YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 288 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~-~~~~~yd~~t~~~~~v~ 353 (383)
..||.++-.. .....+..-.. ...| .+..+|+ |++. ...++ ..++.+|...+..+.+.
T Consensus 374 ~~I~~~dl~~--g~~~~lt~~~~---d~~p-s~spdG~~I~~~--~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 374 FNIARQDLET--GAMQVLTSTRL---DESP-SVAPNGTMVIYS--TTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred eEEEEEECCC--CCeEEccCCCC---CCCc-eECCCCCEEEEE--EecCCceEEEEEECCCCceEECc
Confidence 7888887432 22332221111 1223 3445564 5554 21222 25777888655555553
No 141
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=32.45 E-value=5.8e+02 Score=26.32 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=34.2
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCC
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPH 345 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~ 345 (383)
++.+.+-++-+ .+++||.-++. ....++|-. ..+.+.+..+|+|++. + .++. +.+|-.+
T Consensus 230 ~~~~Ivs~gED----rtlriW~~~e~------~q~I~lPtt--siWsa~~L~NgDIvvg--~-SDG~-VrVfT~~ 288 (745)
T KOG0301|consen 230 SDGLIVSTGED----RTLRIWKKDEC------VQVITLPTT--SIWSAKVLLNGDIVVG--G-SDGR-VRVFTVD 288 (745)
T ss_pred CCCeEEEecCC----ceEEEeecCce------EEEEecCcc--ceEEEEEeeCCCEEEe--c-cCce-EEEEEec
Confidence 45554444433 69999987741 222333333 3555666678888887 6 6664 5555444
No 142
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=32.21 E-value=2.5e+02 Score=25.67 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=39.6
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
+|..++-++.+ ..+-+|...++. ++-|... .... ...-+....++..++. +..+. ++..+|.+|++-
T Consensus 58 ~gs~~aSgG~D----r~I~LWnv~gdc-eN~~~lk---gHsg-AVM~l~~~~d~s~i~S--~gtDk-~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 58 DGSCFASGGSD----RAIVLWNVYGDC-ENFWVLK---GHSG-AVMELHGMRDGSHILS--CGTDK-TVRGWDAETGKR 124 (338)
T ss_pred CCCeEeecCCc----ceEEEEeccccc-cceeeec---cccc-eeEeeeeccCCCEEEE--ecCCc-eEEEEeccccee
Confidence 35554444444 589999976543 4567765 1111 1222233456677776 63455 599999999874
No 143
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.10 E-value=3.8e+02 Score=24.17 Aligned_cols=89 Identities=13% Similarity=0.245 Sum_probs=46.9
Q ss_pred cEEEEEECCCC--eeeEeC-CCCCC--CCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC
Q 016751 237 WLIVSFDFAKE--IFQTVM-MPYDL--STDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP 311 (383)
Q Consensus 237 ~~il~fD~~~~--~~~~i~-lP~~~--~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 311 (383)
..+.+.|+.++ .|+.+- .-++. ...+....++..+|.||++....+ -.+|.....+ ++
T Consensus 33 ~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG-----s~~w~f~~~~---------~v--- 95 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTG-----SQIWNFVILE---------TV--- 95 (354)
T ss_pred ceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecch-----hheeeeeehh---------hh---
Confidence 47777887644 666551 11000 111134566677777777766543 1344443211 11
Q ss_pred CceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 312 QRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 312 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
..++......|.||.. . .++ ++++.|+++..
T Consensus 96 --k~~a~~d~~~glIycg--s-hd~-~~yalD~~~~~ 126 (354)
T KOG4649|consen 96 --KVRAQCDFDGGLIYCG--S-HDG-NFYALDPKTYG 126 (354)
T ss_pred --ccceEEcCCCceEEEe--c-CCC-cEEEecccccc
Confidence 1333444455566665 4 555 48999998875
No 144
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=30.68 E-value=1.7e+02 Score=21.99 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=28.1
Q ss_pred ceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEE
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTIS 178 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~ 178 (383)
-+++..||.+++|...- .....+.+..|+. .+.|.++...
T Consensus 9 a~v~~~~~~~~~W~~~~---~~~g~v~~~~d~~---~~~y~i~~~~ 48 (104)
T cd00837 9 AQVYTADPSTGKWVPAS---GGTGAVSLVKDST---RNTYRIRGVD 48 (104)
T ss_pred EEEEEECCCCCceEECC---CCeEEEEEEEECC---CCEEEEEEEe
Confidence 46899999999998743 1112266778887 7778877654
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=30.33 E-value=2.6e+02 Score=27.57 Aligned_cols=102 Identities=11% Similarity=0.161 Sum_probs=50.2
Q ss_pred cEEEEEECCCC--eeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 016751 237 WLIVSFDFAKE--IFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 314 (383)
Q Consensus 237 ~~il~fD~~~~--~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 314 (383)
.+|-+.|+..- ++-.-.|++...+........--+|+-.++++.. .++.||-|..-. =....+++.....
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea----stlsiWDLAapT----prikaeltssapa 511 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA----STLSIWDLAAPT----PRIKAELTSSAPA 511 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc----ceeeeeeccCCC----cchhhhcCCcchh
Confidence 57888887643 2211144421111111223334467776777654 599999997521 0111222221111
Q ss_pred eEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 315 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 315 ~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
+..+++..+.++.|. +-.++ .+.+||+..+.+
T Consensus 512 CyALa~spDakvcFs--ccsdG-nI~vwDLhnq~~ 543 (705)
T KOG0639|consen 512 CYALAISPDAKVCFS--CCSDG-NIAVWDLHNQTL 543 (705)
T ss_pred hhhhhcCCccceeee--eccCC-cEEEEEccccee
Confidence 233444455566666 53344 377777776654
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=30.28 E-value=5.3e+02 Score=25.20 Aligned_cols=143 Identities=9% Similarity=0.053 Sum_probs=76.7
Q ss_pred EEEeecCCCCceEEEEccCccceeecCCCCCCCC--ceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCC
Q 016751 123 LCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR--YLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGF 200 (383)
Q Consensus 123 l~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~--~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~ 200 (383)
+|... ...-+|+||-.|.+...+-++..... .--|-..+. ..|.++... ...+.+....|+.|-..= .+
T Consensus 273 i~~s~---rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd----~~fia~~G~-~G~I~lLhakT~eli~s~-Ki 343 (514)
T KOG2055|consen 273 IFTSG---RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD----SNFIAIAGN-NGHIHLLHAKTKELITSF-KI 343 (514)
T ss_pred EEecc---cceEEEEeeccccccccccCCCCcccchhheeEecCC----CCeEEEccc-CceEEeehhhhhhhhhee-ee
Confidence 45544 56778999999999998877655431 122322222 223333322 556677777788775333 33
Q ss_pred CceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEE-EeCCeEEEEEe
Q 016751 201 PRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN-VFDGYLCVFAT 279 (383)
Q Consensus 201 p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~-~~~g~L~~v~~ 279 (383)
+...... ...-+|+.-|..+.. ..|..||+....-...-.- ++.. ....++ ..+|.+.. .+
T Consensus 344 eG~v~~~------~fsSdsk~l~~~~~~--------GeV~v~nl~~~~~~~rf~D-~G~v--~gts~~~S~ng~ylA-~G 405 (514)
T KOG2055|consen 344 EGVVSDF------TFSSDSKELLASGGT--------GEVYVWNLRQNSCLHRFVD-DGSV--HGTSLCISLNGSYLA-TG 405 (514)
T ss_pred ccEEeeE------EEecCCcEEEEEcCC--------ceEEEEecCCcceEEEEee-cCcc--ceeeeeecCCCceEE-ec
Confidence 3322211 233467777766554 4899999998844332211 2222 122233 34566444 43
Q ss_pred cCCCCccEEEEEEecc
Q 016751 280 IPNNTFRSYELWVMKE 295 (383)
Q Consensus 280 ~~~~~~~~l~iW~l~~ 295 (383)
.+. ..+.|+..+.
T Consensus 406 S~~---GiVNIYd~~s 418 (514)
T KOG2055|consen 406 SDS---GIVNIYDGNS 418 (514)
T ss_pred cCc---ceEEEeccch
Confidence 333 3666666554
No 147
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=30.07 E-value=4.8e+02 Score=24.67 Aligned_cols=189 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe---cCeEEEEEcCCCceeeeccCCCceeee
Q 016751 130 SDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV---NADAEVYSLRSNSWKNIAYGFPRSIEI 206 (383)
Q Consensus 130 ~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~---~~~~~vyss~t~~W~~~~~~~p~~~~~ 206 (383)
.....++++|...+..+.|-..........+. .+.=+++.... ...+.+++..++.-+.+. ........
T Consensus 167 ~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~S-------pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~ 238 (417)
T TIGR02800 167 SRRYELQVADYDGANPQTITRSREPILSPAWS-------PDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGA 238 (417)
T ss_pred CCcceEEEEcCCCCCCEEeecCCCceecccCC-------CCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccc
Q ss_pred ccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCC
Q 016751 207 NRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNT 284 (383)
Q Consensus 207 ~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~ 284 (383)
. ...-+|. +++..... ....|..+|+.++....+ ..+ ... ........+.+|+++....+
T Consensus 239 ~------~~spDg~~l~~~~~~~------~~~~i~~~d~~~~~~~~l~~~~-~~~---~~~~~s~dg~~l~~~s~~~g-- 300 (417)
T TIGR02800 239 P------AFSPDGSKLAVSLSKD------GNPDIYVMDLDGKQLTRLTNGP-GID---TEPSWSPDGKSIAFTSDRGG-- 300 (417)
T ss_pred e------EECCCCCEEEEEECCC------CCccEEEEECCCCCEEECCCCC-CCC---CCEEECCCCCEEEEEECCCC--
Q ss_pred ccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCce-EEEEEeCCCCeEEEE
Q 016751 285 FRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGY-GLLVYNPHSDTFKCI 352 (383)
Q Consensus 285 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~yd~~t~~~~~v 352 (383)
...||.++- ...++.++..-.... ..+....++..|++. ....+. .++.+|+.++.++.+
T Consensus 301 --~~~iy~~d~--~~~~~~~l~~~~~~~--~~~~~spdg~~i~~~--~~~~~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 301 --SPQIYMMDA--DGGEVRRLTFRGGYN--ASPSWSPDGDLIAFV--HREGGGFNIAVMDLDGGGERVL 361 (417)
T ss_pred --CceEEEEEC--CCCCEEEeecCCCCc--cCeEECCCCCEEEEE--EccCCceEEEEEeCCCCCeEEc
No 148
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=29.06 E-value=90 Score=21.07 Aligned_cols=15 Identities=7% Similarity=0.290 Sum_probs=13.4
Q ss_pred EEEEEeCCCCeEEEE
Q 016751 338 GLLVYNPHSDTFKCI 352 (383)
Q Consensus 338 ~~~~yd~~t~~~~~v 352 (383)
+++.||++|++++-+
T Consensus 42 KIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 42 KIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEE
Confidence 799999999998766
No 149
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.99 E-value=3e+02 Score=29.34 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=34.0
Q ss_pred cEEEEEEeccCCCCCCeEEE-EEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 286 RSYELWVMKEYGLTESWTKL-YTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~~-~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
..+.+|.+.+. ..|+.- .+--... ...+-++.+-++++. ...+. .+-+||+...+
T Consensus 228 RqVKlWrmnet---KaWEvDtcrgH~nn--Vssvlfhp~q~lIlS--nsEDk-sirVwDm~kRt 283 (1202)
T KOG0292|consen 228 RQVKLWRMNET---KAWEVDTCRGHYNN--VSSVLFHPHQDLILS--NSEDK-SIRVWDMTKRT 283 (1202)
T ss_pred ceeeEEEeccc---cceeehhhhcccCC--cceEEecCccceeEe--cCCCc-cEEEEeccccc
Confidence 79999999984 568873 2222211 333444555567776 42333 58899998765
No 150
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.75 E-value=4.7e+02 Score=24.10 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=49.6
Q ss_pred cEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeE--EEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 016751 237 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYL--CVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 314 (383)
Q Consensus 237 ~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L--~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 314 (383)
..+-.+|+.+++-+.+.+- +... ..+--.+|.+ |++++.-+ .++..|-+... ..+.++.++.
T Consensus 94 k~~k~wDL~S~Q~~~v~~H-d~pv----kt~~wv~~~~~~cl~TGSWD---KTlKfWD~R~~------~pv~t~~LPe-- 157 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAH-DAPV----KTCHWVPGMNYQCLVTGSWD---KTLKFWDTRSS------NPVATLQLPE-- 157 (347)
T ss_pred CceEEEEccCCCeeeeeec-ccce----eEEEEecCCCcceeEecccc---cceeecccCCC------Ceeeeeeccc--
Confidence 4788899999988777443 2211 1122223433 78877665 69999988752 3456666653
Q ss_pred eEEEEEeeCCcEEEEEEeeCCceEEEEEeCCC
Q 016751 315 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHS 346 (383)
Q Consensus 315 ~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t 346 (383)
++.++...-.+.++ . ...+.+.+||++.
T Consensus 158 -RvYa~Dv~~pm~vV--a-ta~r~i~vynL~n 185 (347)
T KOG0647|consen 158 -RVYAADVLYPMAVV--A-TAERHIAVYNLEN 185 (347)
T ss_pred -eeeehhccCceeEE--E-ecCCcEEEEEcCC
Confidence 22233222233333 2 2222477777753
No 151
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=27.79 E-value=1.8e+02 Score=26.82 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=11.0
Q ss_pred cEEEEEEeccCCC
Q 016751 286 RSYELWVMKEYGL 298 (383)
Q Consensus 286 ~~l~iW~l~~~~~ 298 (383)
..+++|.++++..
T Consensus 108 r~Ir~w~~~DF~~ 120 (420)
T KOG2096|consen 108 RSIRLWDVRDFEN 120 (420)
T ss_pred ceEEEEecchhhh
Confidence 6999999998754
No 152
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.59 E-value=5.9e+02 Score=24.57 Aligned_cols=146 Identities=12% Similarity=0.209 Sum_probs=71.9
Q ss_pred CeEEEEEEecCeEEEEEcCC---CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC
Q 016751 171 DFKVVTISVNADAEVYSLRS---NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE 247 (383)
Q Consensus 171 ~ykVv~~~~~~~~~vyss~t---~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~ 247 (383)
.++.|+......+...+... +.|+-+. . |.-... ++..+|+--.+.... ..|.-|+..+.
T Consensus 324 g~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~-~~v~dl-------ait~Dgk~vl~v~~d--------~~i~l~~~e~~ 386 (519)
T KOG0293|consen 324 GFRFVTGSPDRTIIMWDLDGNILGNWEGVR-D-PKVHDL-------AITYDGKYVLLVTVD--------KKIRLYNREAR 386 (519)
T ss_pred CceeEecCCCCcEEEecCCcchhhcccccc-c-ceeEEE-------EEcCCCcEEEEEecc--------cceeeechhhh
Confidence 44555443344555566654 5898777 2 222111 455566443333332 25666666543
Q ss_pred eee-EeCCCCCCCCCCCceEEEE-eCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEE-ecCC-CceeEEEEEeeC
Q 016751 248 IFQ-TVMMPYDLSTDDADKYLNV-FDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYT-IEKP-QRIWWPLGFTER 323 (383)
Q Consensus 248 ~~~-~i~lP~~~~~~~~~~~l~~-~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~-i~~~-~~~~~~~~~~~~ 323 (383)
.=. .+..- + ....+.. -+|++.++....+ .+.+|-+++ |..+.. +... ..+.---|++..
T Consensus 387 ~dr~lise~-~-----~its~~iS~d~k~~LvnL~~q----ei~LWDl~e------~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 387 VDRGLISEE-Q-----PITSFSISKDGKLALVNLQDQ----EIHLWDLEE------NKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred hhhcccccc-C-----ceeEEEEcCCCcEEEEEcccC----eeEEeecch------hhHHHHhhcccccceEEEeccCCC
Confidence 322 22211 1 1223333 3589999988774 899999986 222111 1111 101111234333
Q ss_pred C-cEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 016751 324 G-KIFIRGECRHGGYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 324 g-~i~~~~~~~~~~~~~~~yd~~t~~~~~v 352 (383)
+ .++.. + ....+++..+.++++.-.+
T Consensus 451 ~~~fiaS--G-SED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 451 NDKFIAS--G-SEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred CcceEEe--c-CCCceEEEEEccCCceeEe
Confidence 3 44444 2 2222588888888876543
No 153
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=26.42 E-value=5.6e+02 Score=24.21 Aligned_cols=206 Identities=11% Similarity=0.072 Sum_probs=107.8
Q ss_pred eeEEEccCce-EEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCC
Q 016751 113 LDVVGSCNGV-LCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRS 190 (383)
Q Consensus 113 ~~~~~s~~Gl-l~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t 190 (383)
..+.-+.+|- |++.+- +....+.|.|..+++... +|-+- .. ..|-.. ...|.+.|+. .....+.+++
T Consensus 108 ~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv~ei~vp~-~~----~vy~t~---e~~~~~~~~D--g~~~~v~~d~ 176 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFVRMMDVPD-CY----HIFPTA---NDTFFMHCRD--GSLAKVGYGT 176 (352)
T ss_pred ceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEEEEEeCCC-Cc----EEEEec---CCccEEEeec--CceEEEEecC
Confidence 3455666775 444442 247789999999998776 55433 21 222222 4445555543 2233333322
Q ss_pred -CceeeeccCCCc--e--eeeccCcccce--eEECceEEEEEeeccCCCCCCCcEEEEEECCCC------eeeEeCCC--
Q 016751 191 -NSWKNIAYGFPR--S--IEINRSHINSS--VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE------IFQTVMMP-- 255 (383)
Q Consensus 191 -~~W~~~~~~~p~--~--~~~~~~~~~~~--v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~------~~~~i~lP-- 255 (383)
+. .... ..+. . ...... + .-.+|..+|....+ .|...|+... .|..+..-
T Consensus 177 ~g~-~~~~-~~~vf~~~~~~v~~r----P~~~~~dg~~~~vs~eG---------~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 177 KGN-PKIK-PTEVFHPEDEYLINH----PAYSNKSGRLVWPTYTG---------KIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred CCc-eEEe-eeeeecCCccccccC----CceEcCCCcEEEEecCC---------eEEEEecCCCcceecceeeecccccc
Confidence 22 1121 2121 1 000111 3 33379999988765 8999996433 34433111
Q ss_pred CCCC-CCCCceEEEEe--CCeEEEEEecCCC---CccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc-EEE
Q 016751 256 YDLS-TDDADKYLNVF--DGYLCVFATIPNN---TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFI 328 (383)
Q Consensus 256 ~~~~-~~~~~~~l~~~--~g~L~~v~~~~~~---~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~ 328 (383)
.... ...... ++.. +++||+....... ....-+||+++- ..+..+.+|+... ....+++..+|+ .++
T Consensus 242 ~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~----~t~kvi~~i~vG~-~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 242 ADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA----KTGKRLRKIELGH-EIDSINVSQDAKPLLY 315 (352)
T ss_pred ccccCCCccee-EEEcCCCCEEEEEecCCccccccCCCCEEEEEEC----CCCeEEEEEeCCC-ceeeEEECCCCCeEEE
Confidence 0111 111122 3333 4688874421110 012348899885 4588888888765 355677888887 555
Q ss_pred EEEeeCCceEEEEEeCCCCe-EEEE
Q 016751 329 RGECRHGGYGLLVYNPHSDT-FKCI 352 (383)
Q Consensus 329 ~~~~~~~~~~~~~yd~~t~~-~~~v 352 (383)
.- ....+ .+.++|..+.+ .+.+
T Consensus 316 vt-n~~s~-~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 316 AL-STGDK-TLYIFDAETGKELSSV 338 (352)
T ss_pred Ee-CCCCC-cEEEEECcCCeEEeee
Confidence 40 21223 59999999986 4555
No 154
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=26.09 E-value=6.4e+02 Score=24.85 Aligned_cols=147 Identities=12% Similarity=0.002 Sum_probs=79.0
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeee-----ccCcc--cceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEI-----NRSHI--NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV 252 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~-----~~~~~--~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i 252 (383)
.-.+++|++++++=+.++..+|..+.. ..... ..-..++|.++.+...+ .+..+++...---.+
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG---------kaFi~~~~~~~~iqv 356 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG---------KAFIMRPWDGYSIQV 356 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC---------cEEEECCCCCeeEEc
Confidence 668899999999888877555654221 11000 00345678888877665 566666654433333
Q ss_pred CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEe
Q 016751 253 MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGEC 332 (383)
Q Consensus 253 ~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~ 332 (383)
.-+ ... ...++......+ +++..++ ..+.|.-.+.. =.++..-++.. .-.+.+..+|+-+++ .
T Consensus 357 ~~~-~~V---rY~r~~~~~e~~-vigt~dg---D~l~iyd~~~~-----e~kr~e~~lg~--I~av~vs~dGK~~vv--a 419 (668)
T COG4946 357 GKK-GGV---RYRRIQVDPEGD-VIGTNDG---DKLGIYDKDGG-----EVKRIEKDLGN--IEAVKVSPDGKKVVV--A 419 (668)
T ss_pred CCC-Cce---EEEEEccCCcce-EEeccCC---ceEEEEecCCc-----eEEEeeCCccc--eEEEEEcCCCcEEEE--E
Confidence 222 111 223333333332 2333333 36666544431 12222223322 444667778874444 3
Q ss_pred eCCceEEEEEeCCCCeEEEEE
Q 016751 333 RHGGYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 333 ~~~~~~~~~yd~~t~~~~~v~ 353 (383)
.+.. .+.++|.++++.+.++
T Consensus 420 Ndr~-el~vididngnv~~id 439 (668)
T COG4946 420 NDRF-ELWVIDIDNGNVRLID 439 (668)
T ss_pred cCce-EEEEEEecCCCeeEec
Confidence 1444 4999999999988874
No 155
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.71 E-value=4.3e+02 Score=24.45 Aligned_cols=59 Identities=10% Similarity=0.190 Sum_probs=36.0
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 016751 286 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~ 353 (383)
.++.||.|..- =+...+|.... -..-+++...+.|+-. ..++. .+-.||+..+.+-++.
T Consensus 378 rTvKvWdLrNM-----RsplATIRtdS-~~NRvavs~g~~iIAi--PhDNR-qvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 378 RTVKVWDLRNM-----RSPLATIRTDS-PANRVAVSKGHPIIAI--PHDNR-QVRLFDLNGNRLARLP 436 (481)
T ss_pred ceEEEeeeccc-----cCcceeeecCC-ccceeEeecCCceEEe--ccCCc-eEEEEecCCCccccCC
Confidence 68888888752 13344454332 1333566555555554 42444 5999999999887774
No 156
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=25.57 E-value=6.4e+02 Score=24.60 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=35.0
Q ss_pred eEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEE-EecCcceeEEeeeecce
Q 016751 315 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIG-VHLPYYAIQVLNFVESI 370 (383)
Q Consensus 315 ~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~-~~v~-~~~~~~~~~~~~y~~sl 370 (383)
+..+++.-+|.+++. +..++ ++.+.|..+++. +.+. ..|.-.+.++.+|.+..
T Consensus 280 ITcLais~DgtlLlS--Gd~dg-~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~ 334 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLS--GDEDG-KVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGI 334 (476)
T ss_pred eeEEEEecCccEEEe--eCCCC-CEEEEecchHHHHHHHhhhccccceeEeeccccce
Confidence 556777778999998 42244 499999999874 4444 55654556666664433
No 157
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=25.41 E-value=5.2e+02 Score=23.52 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=92.6
Q ss_pred eeEEEccCceEEEeecC--------CCCceEEEEccCccceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEecCeE
Q 016751 113 LDVVGSCNGVLCFCSNG--------SDRSLIYLWNPLIKKYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISVNADA 183 (383)
Q Consensus 113 ~~~~~s~~Gll~~~~~~--------~~~~~~~v~NP~t~~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~~~~~ 183 (383)
..++++..+.+++.... +++..+-+||-.+..-..+-.-.. +.. ..+-|.|. ..+..++-......+
T Consensus 99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~-~~WVscvrfsP~---~~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH-REWVSCVRFSPN---ESNPIIVSASWDKTV 174 (315)
T ss_pred EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCC-cCcEEEEEEcCC---CCCcEEEEccCCceE
Confidence 34556666666555321 367788899988887776654332 223 44566676 656666655546678
Q ss_pred EEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCC
Q 016751 184 EVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDA 263 (383)
Q Consensus 184 ~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~ 263 (383)
.|+++++.+=+.. .+..-.+.... .|..+|.+.--++.+ ..++-.|+...+- ...++ ... .
T Consensus 175 KvWnl~~~~l~~~---~~gh~~~v~t~---~vSpDGslcasGgkd--------g~~~LwdL~~~k~-lysl~-a~~---~ 235 (315)
T KOG0279|consen 175 KVWNLRNCQLRTT---FIGHSGYVNTV---TVSPDGSLCASGGKD--------GEAMLWDLNEGKN-LYSLE-AFD---I 235 (315)
T ss_pred EEEccCCcchhhc---cccccccEEEE---EECCCCCEEecCCCC--------ceEEEEEccCCce-eEecc-CCC---e
Confidence 8888877643321 11111111111 678899887655544 6788888875543 11233 221 2
Q ss_pred ceEEEEeCCeEEEEEecCCCCccEEEEEEecc
Q 016751 264 DKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 295 (383)
Q Consensus 264 ~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~ 295 (383)
-..++....+..+.-... ..+.||.++.
T Consensus 236 v~sl~fspnrywL~~at~----~sIkIwdl~~ 263 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATA----TSIKIWDLES 263 (315)
T ss_pred EeeEEecCCceeEeeccC----CceEEEeccc
Confidence 345667777776665555 4799999986
No 158
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=25.38 E-value=4.9e+02 Score=23.18 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=30.6
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYD 257 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~ 257 (383)
+..+.|+||.+.... .....-..+||+.+++-..+.+|+.
T Consensus 176 aFmvCGvLY~~~s~~----~~~~~I~yafDt~t~~~~~~~i~f~ 215 (250)
T PF02191_consen 176 AFMVCGVLYATDSYD----TRDTEIFYAFDTYTGKEEDVSIPFP 215 (250)
T ss_pred eeeEeeEEEEEEECC----CCCcEEEEEEECCCCceeceeeeec
Confidence 788999999987764 2335577999999988887776643
No 159
>PRK13684 Ycf48-like protein; Provisional
Probab=25.22 E-value=5.6e+02 Score=23.81 Aligned_cols=102 Identities=9% Similarity=0.211 Sum_probs=47.5
Q ss_pred eEEEEEcCC--CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC
Q 016751 182 DAEVYSLRS--NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS 259 (383)
Q Consensus 182 ~~~vyss~t--~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~ 259 (383)
.-.||-+.+ .+|+......+...... . .+...+.--|+.+.. ..|+.=+=.-++|+.+..| ...
T Consensus 65 ~G~il~T~DgG~tW~~~~~~~~~~~~~l--~---~v~~~~~~~~~~G~~--------g~i~~S~DgG~tW~~~~~~-~~~ 130 (334)
T PRK13684 65 NRTLLETNDGGETWEERSLDLPEENFRL--I---SISFKGDEGWIVGQP--------SLLLHTTDGGKNWTRIPLS-EKL 130 (334)
T ss_pred CCEEEEEcCCCCCceECccCCcccccce--e---eeEEcCCcEEEeCCC--------ceEEEECCCCCCCeEccCC-cCC
Confidence 346777765 48998763332111111 1 444444434555443 2344333334699988654 222
Q ss_pred CCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEE
Q 016751 260 TDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYT 307 (383)
Q Consensus 260 ~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~ 307 (383)
.... ..+... ++.++++.... .|+.-.+. ...|.++..
T Consensus 131 ~~~~-~~i~~~~~~~~~~~g~~G-------~i~~S~Dg--G~tW~~~~~ 169 (334)
T PRK13684 131 PGSP-YLITALGPGTAEMATNVG-------AIYRTTDG--GKNWEALVE 169 (334)
T ss_pred CCCc-eEEEEECCCcceeeeccc-------eEEEECCC--CCCceeCcC
Confidence 1111 122222 34455443322 24455543 367998653
No 160
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.20 E-value=5e+02 Score=23.22 Aligned_cols=198 Identities=12% Similarity=0.178 Sum_probs=92.7
Q ss_pred CCceEEEEccCccceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEecCeEEEEEcCC-Cceeeecc--CCCceeee
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISVNADAEVYSLRS-NSWKNIAY--GFPRSIEI 206 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t-~~W~~~~~--~~p~~~~~ 206 (383)
.++++.|++-..++|.++-.-...... -.+.+.|. .-.+-+.|....-.+-|++..+ +.|..... ..+.+...
T Consensus 78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waph---eygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPH---EYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred cCceEEEEecCCCchhhhhhhhhhcccceeeccccc---ccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 578899999999988876543332211 22333333 3334444444444555655554 48854331 01111110
Q ss_pred ccCcccceeEECce---------EEEEEeeccCCCCCCCcEEEEEECCCCeeeEeC-CCCCCCCCC-CceEEEEe--CCe
Q 016751 207 NRSHINSSVFLNGS---------VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM-MPYDLSTDD-ADKYLNVF--DGY 273 (383)
Q Consensus 207 ~~~~~~~~v~~~G~---------lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~-~~~~l~~~--~g~ 273 (383)
..-. +....|. +|=+... .....+-..+..+.+|..=. |- .+ .+- ....-+-. -.+
T Consensus 155 Vswa---pa~~~g~~~~~~~~~~~krlvSg------GcDn~VkiW~~~~~~w~~e~~l~-~H-~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 155 VSWA---PASAPGSLVDQGPAAKVKRLVSG------GCDNLVKIWKFDSDSWKLERTLE-GH-KDWVRDVAWAPSVGLPK 223 (299)
T ss_pred eeec---CcCCCccccccCcccccceeecc------CCccceeeeecCCcchhhhhhhh-hc-chhhhhhhhccccCCCc
Confidence 0000 1111111 1111111 12234444555555664321 21 11 110 01111111 235
Q ss_pred EEEEEecCCCCccEEEEEEeccCCCCCCeEEE--EEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCC-CeEE
Q 016751 274 LCVFATIPNNTFRSYELWVMKEYGLTESWTKL--YTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS-DTFK 350 (383)
Q Consensus 274 L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~--~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t-~~~~ 350 (383)
-+++....+ .++-||..++. .++|... ++.+-. .++ +...-.|+++-+ . .+..++.++-... ++|+
T Consensus 224 s~iAS~SqD---g~viIwt~~~e--~e~wk~tll~~f~~~--~w~-vSWS~sGn~LaV--s-~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 224 STIASCSQD---GTVIIWTKDEE--YEPWKKTLLEEFPDV--VWR-VSWSLSGNILAV--S-GGDNKVTLWKENVDGKWE 292 (299)
T ss_pred eeeEEecCC---CcEEEEEecCc--cCcccccccccCCcc--eEE-EEEeccccEEEE--e-cCCcEEEEEEeCCCCcEE
Confidence 577776666 68999999853 4678864 333322 233 333456767766 4 3333466666555 4788
Q ss_pred EEE
Q 016751 351 CIG 353 (383)
Q Consensus 351 ~v~ 353 (383)
++.
T Consensus 293 ~v~ 295 (299)
T KOG1332|consen 293 EVG 295 (299)
T ss_pred Ecc
Confidence 874
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=24.73 E-value=5.7e+02 Score=23.76 Aligned_cols=108 Identities=22% Similarity=0.205 Sum_probs=0.0
Q ss_pred CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe----CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEe
Q 016751 218 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM 293 (383)
Q Consensus 218 ~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i----~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l 293 (383)
.|.+-.++..+ ..++.||+.|.....+ -.| -....-.-+|+..+....+. .+.+|-+
T Consensus 34 ~G~~lAvGc~n--------G~vvI~D~~T~~iar~lsaH~~p-------i~sl~WS~dgr~LltsS~D~----si~lwDl 94 (405)
T KOG1273|consen 34 WGDYLAVGCAN--------GRVVIYDFDTFRIARMLSAHVRP-------ITSLCWSRDGRKLLTSSRDW----SIKLWDL 94 (405)
T ss_pred CcceeeeeccC--------CcEEEEEccccchhhhhhccccc-------eeEEEecCCCCEeeeecCCc----eeEEEec
Q ss_pred ccCCCCCCeEEEEEecCCCc--------------------------------------------eeEEEEEeeCCcEEEE
Q 016751 294 KEYGLTESWTKLYTIEKPQR--------------------------------------------IWWPLGFTERGKIFIR 329 (383)
Q Consensus 294 ~~~~~~~~W~~~~~i~~~~~--------------------------------------------~~~~~~~~~~g~i~~~ 329 (383)
-. +.=.++.+++.+.. ......+...|+.++.
T Consensus 95 ~~----gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 95 LK----GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred cC----CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Q ss_pred EEeeCCceEEEEEeCCCCeEEE
Q 016751 330 GECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 330 ~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
|+. +++ +++||.+|-+...
T Consensus 171 Gts-KGk--llv~~a~t~e~va 189 (405)
T KOG1273|consen 171 GTS-KGK--LLVYDAETLECVA 189 (405)
T ss_pred ecC-cce--EEEEecchheeee
No 162
>PLN02772 guanylate kinase
Probab=24.64 E-value=2.9e+02 Score=26.52 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=40.7
Q ss_pred eEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEE---EEecCCCceeEEEEEeeCCcEEEE
Q 016751 265 KYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKL---YTIEKPQRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 265 ~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~---~~i~~~~~~~~~~~~~~~g~i~~~ 329 (383)
....+.++++|++++.++.+.....+|.++.. ...|..- .+.|.+.. -...++.++++|++.
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~--t~~W~~P~V~G~~P~~r~-GhSa~v~~~~rilv~ 92 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKI--TNNWVSPIVLGTGPKPCK-GYSAVVLNKDRILVI 92 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECC--CCcEecccccCCCCCCCC-cceEEEECCceEEEE
Confidence 45677899999999866532246788999863 5779973 45555442 233444556677777
No 163
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.16 E-value=5.5e+02 Score=24.24 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=42.0
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec-CCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 272 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE-KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 272 g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
|..+.....+ ..+.+|.+.-. ..+.++. ... +.+-+++..+|+-++. +.+++ .+-+||+++++-.
T Consensus 304 ~~~l~s~SrD----ktIk~wdv~tg------~cL~tL~ghdn-wVr~~af~p~Gkyi~S--caDDk-tlrvwdl~~~~cm 369 (406)
T KOG0295|consen 304 GQVLGSGSRD----KTIKIWDVSTG------MCLFTLVGHDN-WVRGVAFSPGGKYILS--CADDK-TLRVWDLKNLQCM 369 (406)
T ss_pred ccEEEeeccc----ceEEEEeccCC------eEEEEEecccc-eeeeeEEcCCCeEEEE--EecCC-cEEEEEeccceee
Confidence 4455555444 58999998752 2223332 222 5666778888888777 75566 5999999987643
No 164
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=23.94 E-value=2.5e+02 Score=26.05 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=39.0
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIP 281 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~ 281 (383)
+-..+|.||.+.... ..+...|+.++++..+ .+| ... .-|+-. |.+.+|+...
T Consensus 208 PRWhdgrLwvldsgt--------Gev~~vD~~~G~~e~Va~vp-G~~-----rGL~f~-G~llvVgmSk 261 (335)
T TIGR03032 208 PRWYQGKLWLLNSGR--------GELGYVDPQAGKFQPVAFLP-GFT-----RGLAFA-GDFAFVGLSK 261 (335)
T ss_pred CcEeCCeEEEEECCC--------CEEEEEcCCCCcEEEEEECC-CCC-----ccccee-CCEEEEEecc
Confidence 678889999887654 6999999999999888 787 432 123333 8888887643
No 165
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=23.61 E-value=9e+02 Score=25.66 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=41.7
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe--CCCCCCCCCCCceEEEEeC-CeEEEEEecCCCCccEEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV--MMPYDLSTDDADKYLNVFD-GYLCVFATIPNNTFRSYEL 290 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i--~lP~~~~~~~~~~~l~~~~-g~L~~v~~~~~~~~~~l~i 290 (383)
++...|.+-+++... +.|-.||+.++.-+.- .-| .+- .....++.-+ +++.+..+.++ .+..
T Consensus 455 ~vs~CGNF~~IG~S~--------G~Id~fNmQSGi~r~sf~~~~-ah~--~~V~gla~D~~n~~~vsa~~~G----ilkf 519 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSK--------GTIDRFNMQSGIHRKSFGDSP-AHK--GEVTGLAVDGTNRLLVSAGADG----ILKF 519 (910)
T ss_pred EEeccCceEEEeccC--------CeEEEEEcccCeeecccccCc-ccc--CceeEEEecCCCceEEEccCcc----eEEE
Confidence 566678888877765 6899999987755432 333 111 1122344333 56666666654 7888
Q ss_pred EEeccC
Q 016751 291 WVMKEY 296 (383)
Q Consensus 291 W~l~~~ 296 (383)
|.++.-
T Consensus 520 w~f~~k 525 (910)
T KOG1539|consen 520 WDFKKK 525 (910)
T ss_pred EecCCc
Confidence 888753
No 166
>PTZ00420 coronin; Provisional
Probab=23.60 E-value=6.7e+02 Score=25.47 Aligned_cols=55 Identities=13% Similarity=0.342 Sum_probs=33.1
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 286 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
..+.||-+.... ....+.... ....+.+..+|.++.. ...++ .+.+||+++++..
T Consensus 148 gtIrIWDl~tg~------~~~~i~~~~-~V~SlswspdG~lLat--~s~D~-~IrIwD~Rsg~~i 202 (568)
T PTZ00420 148 SFVNIWDIENEK------RAFQINMPK-KLSSLKWNIKGNLLSG--TCVGK-HMHIIDPRKQEIA 202 (568)
T ss_pred CeEEEEECCCCc------EEEEEecCC-cEEEEEECCCCCEEEE--EecCC-EEEEEECCCCcEE
Confidence 589999887521 222332222 2444556667877765 42455 4999999988643
No 167
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=23.00 E-value=6.4e+02 Score=23.73 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=41.0
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEe
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM 293 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l 293 (383)
.|-.+.+ |-+...+ ...|-+.|..|..|-.+--- .. .......++|+|.+-+..+ .++++|..
T Consensus 325 vVdfd~k-yIVsASg-------DRTikvW~~st~efvRtl~g-Hk----RGIAClQYr~rlvVSGSSD----ntIRlwdi 387 (499)
T KOG0281|consen 325 VVDFDDK-YIVSASG-------DRTIKVWSTSTCEFVRTLNG-HK----RGIACLQYRDRLVVSGSSD----NTIRLWDI 387 (499)
T ss_pred eeccccc-eEEEecC-------CceEEEEeccceeeehhhhc-cc----ccceehhccCeEEEecCCC----ceEEEEec
Confidence 4556666 4444433 36888999998888554211 11 2345566788887766555 58999987
Q ss_pred cc
Q 016751 294 KE 295 (383)
Q Consensus 294 ~~ 295 (383)
+.
T Consensus 388 ~~ 389 (499)
T KOG0281|consen 388 EC 389 (499)
T ss_pred cc
Confidence 64
No 168
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=22.85 E-value=6.6e+02 Score=23.79 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=93.8
Q ss_pred CCceEEEEccCcccee-ecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccC
Q 016751 131 DRSLIYLWNPLIKKYM-TLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRS 209 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~-~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~ 209 (383)
..+++.|.|..|++.+ .+|..... +.+..+.+ .+.|-.+. .....+.+++..+++ .+. ..+.+.....
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~--h~~~~~s~----Dgr~~yv~-~rdg~vsviD~~~~~--~v~-~i~~G~~~~~- 82 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAP--HAGLKFSP----DGRYLYVA-NRDGTVSVIDLATGK--VVA-TIKVGGNPRG- 82 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTE--EEEEE-TT-----SSEEEEE-ETTSEEEEEETTSSS--EEE-EEE-SSEEEE-
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCc--eeEEEecC----CCCEEEEE-cCCCeEEEEECCccc--EEE-EEecCCCcce-
Confidence 5778999999987644 45543221 12233333 23443333 335578889888875 333 3332222111
Q ss_pred cccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe-eeEeCCCCCCCC---CCCceEEEEeC-CeEEEEEecCCCC
Q 016751 210 HINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI-FQTVMMPYDLST---DDADKYLNVFD-GYLCVFATIPNNT 284 (383)
Q Consensus 210 ~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~-~~~i~lP~~~~~---~~~~~~l~~~~-g~L~~v~~~~~~~ 284 (383)
- ++.-+|..-+.+... +..+..+|..+.+ .+.++.. .... ......+.... +..+++...+.
T Consensus 83 i---~~s~DG~~~~v~n~~-------~~~v~v~D~~tle~v~~I~~~-~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~-- 149 (369)
T PF02239_consen 83 I---AVSPDGKYVYVANYE-------PGTVSVIDAETLEPVKTIPTG-GMPVDGPESRVAAIVASPGRPEFVVNLKDT-- 149 (369)
T ss_dssp E---EE--TTTEEEEEEEE-------TTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSSEEEEEETTT--
T ss_pred E---EEcCCCCEEEEEecC-------CCceeEeccccccceeecccc-cccccccCCCceeEEecCCCCEEEEEEccC--
Confidence 1 455688755545433 3689999987643 3444332 1111 10122344444 45577766653
Q ss_pred ccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 016751 285 FRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 285 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v 352 (383)
=+||+++-...+. .+...+.... ...-.++..+|+-++. ...+..++.+.|.++++...+
T Consensus 150 ---~~I~vVdy~d~~~--~~~~~i~~g~-~~~D~~~dpdgry~~v--a~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 150 ---GEIWVVDYSDPKN--LKVTTIKVGR-FPHDGGFDPDGRYFLV--AANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp ---TEEEEEETTTSSC--EEEEEEE--T-TEEEEEE-TTSSEEEE--EEGGGTEEEEEETTTTEEEEE
T ss_pred ---CeEEEEEeccccc--cceeeecccc-cccccccCcccceeee--cccccceeEEEeeccceEEEE
Confidence 3789886322222 2334444433 2333566677766555 212333699999999987653
No 169
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=22.19 E-value=5.4e+02 Score=22.60 Aligned_cols=130 Identities=19% Similarity=0.258 Sum_probs=70.0
Q ss_pred eEEE-EEcCC-CceeeeccCCCceeeeccCcccceeE--ECceEEEEEeeccCCCCCCCcEEEEEECC-CCeeeEe---C
Q 016751 182 DAEV-YSLRS-NSWKNIAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFA-KEIFQTV---M 253 (383)
Q Consensus 182 ~~~v-yss~t-~~W~~~~~~~p~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~~~il~fD~~-~~~~~~i---~ 253 (383)
...+ ||... .+|+... ..+......+. .+. -+|.+|.+.... ......++.... -++|+.. .
T Consensus 134 ~~~~~~S~D~G~tW~~~~-~~~~~~~~~e~----~~~~~~dG~l~~~~R~~-----~~~~~~~~~S~D~G~TWs~~~~~~ 203 (275)
T PF13088_consen 134 SAFVYYSDDGGKTWSSGS-PIPDGQGECEP----SIVELPDGRLLAVFRTE-----GNDDIYISRSTDGGRTWSPPQPTN 203 (275)
T ss_dssp EEEEEEESSTTSSEEEEE-ECECSEEEEEE----EEEEETTSEEEEEEEEC-----SSTEEEEEEESSTTSS-EEEEEEE
T ss_pred ceEEEEeCCCCceeeccc-cccccCCccee----EEEECCCCcEEEEEEcc-----CCCcEEEEEECCCCCcCCCceecc
Confidence 3344 44443 4798887 44211111121 222 578999887652 112455555554 4578764 5
Q ss_pred CCCCCCCCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC---ceeEEEEEeeCCcEEE
Q 016751 254 MPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ---RIWWPLGFTERGKIFI 328 (383)
Q Consensus 254 lP~~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~---~~~~~~~~~~~g~i~~ 328 (383)
+| ... ....+..+ +|++.++..... ....+.++.-++. ...|.....|.... ..+..+...++|.|++
T Consensus 204 ~~-~~~---~~~~~~~~~~g~~~~~~~~~~-~r~~l~l~~S~D~--g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 204 LP-NPN---SSISLVRLSDGRLLLVYNNPD-GRSNLSLYVSEDG--GKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CS-SCC---EEEEEEECTTSEEEEEEECSS-TSEEEEEEEECTT--CEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cC-ccc---CCceEEEcCCCCEEEEEECCC-CCCceEEEEEeCC--CCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 55 332 23445554 578888887311 2256778776553 46799877775432 2333444556677764
No 170
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=21.01 E-value=5.9e+02 Score=22.98 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=36.6
Q ss_pred eEECceEEEEEeeccCCCCCCC-cEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEec
Q 016751 215 VFLNGSVHWCARFSCYHDNSCP-WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATI 280 (383)
Q Consensus 215 v~~~G~lYw~~~~~~~~~~~~~-~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~ 280 (383)
-+.+|+||-..... . .... ..+..-+..-+.|+.+..| ..... .....+..++.|++++..
T Consensus 197 kyY~g~LyLtTRgt--~-~~~~GS~L~rs~d~G~~w~slrfp-~nvHh-tnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 197 KYYDGVLYLTTRGT--L-PTNPGSSLHRSDDNGQNWSSLRFP-NNVHH-TNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEETTEEEEEEEES----TTS---EEEEESSTTSS-EEEE-T-T---S-S---EEEETTEEEEEEE-
T ss_pred hhhCCEEEEEEcCc--C-CCCCcceeeeecccCCchhhcccc-ccccc-cCCCceeeCCEEEEEecc
Confidence 48899999988764 1 2223 3455556678899999999 65533 445677889999998753
No 171
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=20.72 E-value=4e+02 Score=20.51 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=41.1
Q ss_pred CeEEEEEcCCCceeeeccCCC--ceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEE-ECCCCeeeEe--CCC
Q 016751 181 ADAEVYSLRSNSWKNIAYGFP--RSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSF-DFAKEIFQTV--MMP 255 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~~~p--~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~f-D~~~~~~~~i--~lP 255 (383)
..+-.||.++.+|+.+. .| ......... -+-.+|+|-.+.... ......-.|.++ |..++.|+.. .+|
T Consensus 20 ~~IvsFDv~~E~f~~i~--~P~~~~~~~~~~~---L~~~~G~L~~v~~~~--~~~~~~~~iWvLeD~~k~~Wsk~~~~lp 92 (129)
T PF08268_consen 20 NVIVSFDVRSEKFRFIK--LPEDPYSSDCSST---LIEYKGKLALVSYND--QGEPDSIDIWVLEDYEKQEWSKKHIVLP 92 (129)
T ss_pred cEEEEEEcCCceEEEEE--eeeeeccccCccE---EEEeCCeEEEEEecC--CCCcceEEEEEeeccccceEEEEEEECC
Confidence 45567899999999888 33 111111222 468899998876654 111122456555 5778899765 455
No 172
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=20.62 E-value=8.5e+02 Score=27.26 Aligned_cols=56 Identities=9% Similarity=0.205 Sum_probs=37.1
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 286 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
..+..|-.... ..-|.++...... ....+++...+.-++.|+. .| .+.++|++=+.
T Consensus 1173 ~~iv~~D~r~~--~~~w~lk~~~~hG--~vTSi~idp~~~WlviGts--~G-~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1173 SRIVSWDTRMR--HDAWRLKNQLRHG--LVTSIVIDPWCNWLVIGTS--RG-QLVLWDLRFRV 1228 (1431)
T ss_pred cceEEecchhh--hhHHhhhcCcccc--ceeEEEecCCceEEEEecC--Cc-eEEEEEeecCc
Confidence 36667766543 2468887766665 3677788777787777444 33 38999998654
No 173
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=20.60 E-value=48 Score=26.70 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHhcCChhhhHHhhccchhhHhh
Q 016751 24 FRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTL 56 (383)
Q Consensus 24 ~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~l 56 (383)
+..-.|++++=|..|.-...+||++|-|++.++
T Consensus 105 S~~IGe~Vm~~L~~lD~VAYVRFASVYr~F~dv 137 (147)
T TIGR00244 105 SELIGQMVMQYLKKLDEVAYIRFASVYRSFQDI 137 (147)
T ss_pred HHHHHHHHHHHHhhcCcchhhhhhhhcCCCCCH
Confidence 344567777888889999999999999999876
No 174
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.53 E-value=9.8e+02 Score=24.94 Aligned_cols=122 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred eeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCC--CceEEEEeCCeEEEEEec
Q 016751 203 SIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDD--ADKYLNVFDGYLCVFATI 280 (383)
Q Consensus 203 ~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~--~~~~l~~~~g~L~~v~~~ 280 (383)
+.+.+..- .+.-||..-+....+ .|..-|+.+.+.. +| ...... ....++...+.-.++...
T Consensus 18 piYtGG~~---~~s~nG~~L~t~~~d---------~Vi~idv~t~~~~---l~-s~~~ed~d~ita~~l~~d~~~L~~a~ 81 (775)
T KOG0319|consen 18 PIYTGGPV---AWSSNGQHLYTACGD---------RVIIIDVATGSIA---LP-SGSNEDEDEITALALTPDEEVLVTAS 81 (775)
T ss_pred ceecCCce---eECCCCCEEEEecCc---------eEEEEEccCCcee---cc-cCCccchhhhheeeecCCccEEEEee
Q ss_pred CCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 281 PNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 281 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
.. .-+++|.++...--..|.-.|+-|... +.+...|-++-. .+-++. +-+.|.+.+....
T Consensus 82 rs---~llrv~~L~tgk~irswKa~He~Pvi~-----ma~~~~g~LlAt--ggaD~~-v~VWdi~~~~~th 141 (775)
T KOG0319|consen 82 RS---QLLRVWSLPTGKLIRSWKAIHEAPVIT-----MAFDPTGTLLAT--GGADGR-VKVWDIKNGYCTH 141 (775)
T ss_pred cc---ceEEEEEcccchHhHhHhhccCCCeEE-----EEEcCCCceEEe--ccccce-EEEEEeeCCEEEE
No 175
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.28 E-value=7.4e+02 Score=23.40 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=37.4
Q ss_pred CCCCcEEEEEECCCCee-eEeCCCCCC-C--CCCCceEEEEe-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEE
Q 016751 233 NSCPWLIVSFDFAKEIF-QTVMMPYDL-S--TDDADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLY 306 (383)
Q Consensus 233 ~~~~~~il~fD~~~~~~-~~i~lP~~~-~--~~~~~~~l~~~-~g~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 306 (383)
+...+.|..||+.+.+. ..+++| .. . .......++.. +|+ |++...... ..+.|.-++. ...+.
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p-~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~---~~V~VvD~~~------~kvv~ 142 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELP-EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS---PAVGVVDLEG------KAFVR 142 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccC-CCchhhccCccceEEECCCCCEEEEecCCCC---CEEEEEECCC------CcEEE
Confidence 34568999999998876 556776 33 1 11122223322 354 555554423 3555544443 45556
Q ss_pred EecCCC
Q 016751 307 TIEKPQ 312 (383)
Q Consensus 307 ~i~~~~ 312 (383)
+|+.+.
T Consensus 143 ei~vp~ 148 (352)
T TIGR02658 143 MMDVPD 148 (352)
T ss_pred EEeCCC
Confidence 666554
No 176
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=20.22 E-value=2.2e+02 Score=21.58 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=26.3
Q ss_pred ceEEEEccCccc-eeecCCCCCCCCceeEEEeccCCCCCCeEEEEE
Q 016751 133 SLIYLWNPLIKK-YMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTI 177 (383)
Q Consensus 133 ~~~~v~NP~t~~-~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~ 177 (383)
-+++..||.+++ |... .....+.+..|.. .+.|+|..+
T Consensus 16 A~v~~~~p~~~~~W~~~----~~~g~v~~v~d~~---~~~y~I~~~ 54 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV----KGTGVVCFVKDNS---RRSYFIRLY 54 (111)
T ss_dssp EEEEEEETTTSESEEES----SSEEEEEEEEETT---TTEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC----CeEEEEEEEEECC---CCEEEEEEE
Confidence 368899999888 9876 1112256777877 777877654
No 177
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=20.15 E-value=4.1e+02 Score=22.43 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=24.9
Q ss_pred CeeEEEccCceEEEeecCCCCceEEEEccCcccee
Q 016751 112 DLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYM 146 (383)
Q Consensus 112 ~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~ 146 (383)
.+.-+.-.||-.|+.+ ..+..+..||+|++..
T Consensus 32 r~s~VS~~~~~~C~s~---~~~~~~~vDP~Tgra~ 63 (263)
T PF07861_consen 32 RFSSVSFAGGRACLSD---TAGSVYTVDPLTGRAV 63 (263)
T ss_pred eeEEEecCCceEEEec---CCCceEEecccccccc
Confidence 4555677789999998 6888899999996543
Done!