BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016752
         (383 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin
           Metaloenzyme At 1.85 A Resolution
          Length = 965

 Score = 32.0 bits (71), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 317 FKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDS 363
             +G E +D+ +W+  WY PQ+ +  DQ  ++   +  RD++  +D+
Sbjct: 584 LSHGAEFEDVGQWKRPWYYPQAGETMDQA-VYRESKAVRDSVGMLDA 629


>pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin
           Metaloenzyme At 1.85 A Resolution
          Length = 965

 Score = 31.6 bits (70), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 317 FKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDS 363
             +G E +D+ +W+  WY PQ+ +  DQ  ++   +  RD++  +D+
Sbjct: 584 LSHGAEFEDVGQWKRPWYYPQAGETXDQA-VYRESKAVRDSVGXLDA 629


>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
           In Complex With Indirubin E804
 pdb|3EB0|C Chain C, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
           In Complex With Indirubin E804
          Length = 383

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 168 QFVRENVEYTEVSVYSLRSNSWRRI 192
           Q +R N  YTEV   +L++  WR+I
Sbjct: 265 QMIRMNPHYTEVRFPTLKAKDWRKI 289


>pdb|3ZZO|A Chain A, Crystal Structure Of The Cg11501 Protein In P212121
           Spacegroup
 pdb|3ZZR|A Chain A, Crystal Structure Of The Cg11501 Protein In P21212
           Spacegroup
          Length = 95

 Score = 28.1 bits (61), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 347 IHGVPQGCRDTLVCVDSLVSLAAYAGRG 374
           I   P GC  T +C D +  L AY G+G
Sbjct: 24  IENYPNGCEVT-ICADGVAQLGAYCGQG 50


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,387,251
Number of Sequences: 62578
Number of extensions: 559463
Number of successful extensions: 1008
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 6
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)