Query 016752
Match_columns 383
No_of_seqs 150 out of 1577
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.3E-34 4.9E-39 253.0 26.3 221 105-339 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 6.8E-15 1.5E-19 121.9 18.6 149 206-363 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 4.5E-14 9.7E-19 112.1 13.6 106 206-314 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.6 1.6E-12 3.5E-17 118.6 23.0 316 1-364 4-372 (373)
5 PF12937 F-box-like: F-box-lik 99.0 1.1E-10 2.5E-15 74.7 0.3 43 1-43 1-43 (47)
6 PHA02713 hypothetical protein; 99.0 4.9E-08 1.1E-12 96.5 18.6 198 119-346 320-541 (557)
7 KOG4441 Proteins containing BT 99.0 4.8E-08 1E-12 96.4 18.4 200 119-345 349-553 (571)
8 PHA02713 hypothetical protein; 98.9 2.2E-07 4.7E-12 92.0 21.3 224 120-370 273-521 (557)
9 PHA03098 kelch-like protein; P 98.9 3.5E-07 7.5E-12 90.7 21.8 199 120-345 312-518 (534)
10 PLN02153 epithiospecifier prot 98.8 8.4E-07 1.8E-11 82.8 21.7 212 119-348 50-294 (341)
11 PHA02790 Kelch-like protein; P 98.8 7.2E-07 1.6E-11 86.9 20.9 187 120-342 288-475 (480)
12 TIGR03548 mutarot_permut cycli 98.8 3E-06 6.5E-11 78.4 23.3 234 120-375 40-317 (323)
13 PF00646 F-box: F-box domain; 98.8 9.7E-10 2.1E-14 70.8 -0.7 43 2-44 4-46 (48)
14 PLN02193 nitrile-specifier pro 98.7 2.7E-06 5.8E-11 82.7 22.2 216 120-348 194-420 (470)
15 smart00256 FBOX A Receptor for 98.6 5.1E-09 1.1E-13 64.9 -0.1 39 4-42 1-39 (41)
16 KOG4441 Proteins containing BT 98.6 4.3E-06 9.3E-11 82.7 19.6 201 119-346 301-507 (571)
17 TIGR03547 muta_rot_YjhT mutatr 98.5 5.7E-05 1.2E-09 70.6 23.1 236 119-371 29-331 (346)
18 PHA03098 kelch-like protein; P 98.4 1.9E-05 4E-10 78.5 19.3 225 121-370 266-496 (534)
19 PLN02153 epithiospecifier prot 98.4 0.0001 2.3E-09 68.7 21.4 163 119-292 101-294 (341)
20 PLN02193 nitrile-specifier pro 98.4 8.9E-05 1.9E-09 72.1 21.4 229 120-369 138-385 (470)
21 PRK14131 N-acetylneuraminic ac 98.4 0.00041 8.8E-09 65.6 25.3 158 177-342 189-373 (376)
22 PHA02790 Kelch-like protein; P 98.3 3.1E-05 6.7E-10 75.6 17.2 153 106-287 315-475 (480)
23 PRK14131 N-acetylneuraminic ac 98.3 0.00021 4.5E-09 67.6 22.2 162 119-294 50-260 (376)
24 TIGR03547 muta_rot_YjhT mutatr 98.2 0.0008 1.7E-08 62.9 23.9 117 177-294 168-310 (346)
25 TIGR03548 mutarot_permut cycli 98.1 0.00075 1.6E-08 62.4 21.2 137 119-271 88-232 (323)
26 KOG4693 Uncharacterized conser 97.8 0.00066 1.4E-08 58.5 13.6 227 107-351 32-289 (392)
27 KOG1230 Protein containing rep 97.7 0.0014 3E-08 60.0 14.6 222 119-350 98-352 (521)
28 KOG0379 Kelch repeat-containin 97.4 0.025 5.3E-07 55.3 19.3 215 120-349 89-312 (482)
29 KOG2120 SCF ubiquitin ligase, 97.2 8.7E-05 1.9E-09 65.2 -0.3 39 2-40 99-137 (419)
30 KOG0379 Kelch repeat-containin 97.1 0.034 7.4E-07 54.3 17.2 173 109-293 123-312 (482)
31 KOG4693 Uncharacterized conser 97.1 0.015 3.2E-07 50.4 12.2 113 175-292 155-286 (392)
32 KOG2997 F-box protein FBX9 [Ge 96.8 0.00035 7.7E-09 61.7 0.3 46 1-46 107-157 (366)
33 KOG1230 Protein containing rep 96.1 0.12 2.7E-06 47.7 12.3 142 178-342 99-256 (521)
34 KOG0281 Beta-TrCP (transducin 96.0 0.0019 4.1E-08 57.7 0.3 43 1-43 75-121 (499)
35 KOG2055 WD40 repeat protein [G 95.5 0.44 9.6E-06 44.6 13.3 107 227-350 280-387 (514)
36 PF13964 Kelch_6: Kelch motif 95.4 0.039 8.4E-07 35.3 4.7 39 205-243 6-44 (50)
37 PF13360 PQQ_2: PQQ-like domai 94.9 2.3 4.9E-05 36.9 17.0 186 108-342 35-235 (238)
38 PF02191 OLF: Olfactomedin-lik 94.9 2.2 4.8E-05 37.7 15.6 124 205-348 73-213 (250)
39 PF01344 Kelch_1: Kelch motif; 94.3 0.12 2.6E-06 32.3 4.6 39 205-243 6-44 (47)
40 KOG0274 Cdc4 and related F-box 93.9 7.5 0.00016 38.6 20.3 42 1-42 108-149 (537)
41 PF07646 Kelch_2: Kelch motif; 93.7 0.19 4.1E-06 31.9 4.8 40 205-244 6-47 (49)
42 PF07762 DUF1618: Protein of u 93.1 0.66 1.4E-05 36.5 8.1 67 228-294 7-98 (131)
43 PF01344 Kelch_1: Kelch motif; 92.5 0.33 7.2E-06 30.2 4.6 35 162-197 13-47 (47)
44 PF07250 Glyoxal_oxid_N: Glyox 91.8 2.8 6E-05 36.8 10.8 169 177-369 46-226 (243)
45 smart00284 OLF Olfactomedin-li 91.6 9.2 0.0002 33.8 16.1 123 205-347 78-217 (255)
46 PF13964 Kelch_6: Kelch motif 90.9 0.46 9.9E-06 30.2 4.0 23 118-140 27-49 (50)
47 PF07893 DUF1668: Protein of u 90.9 13 0.00029 34.5 15.2 151 104-271 71-252 (342)
48 TIGR01640 F_box_assoc_1 F-box 89.6 12 0.00026 32.4 13.2 121 208-344 3-132 (230)
49 KOG4152 Host cell transcriptio 88.2 5.5 0.00012 38.3 10.1 161 119-290 57-246 (830)
50 PF10282 Lactonase: Lactonase, 87.6 19 0.00042 33.5 13.8 117 210-347 154-286 (345)
51 PF08450 SGL: SMP-30/Gluconola 87.0 20 0.00044 31.3 21.1 198 104-348 6-223 (246)
52 PF13418 Kelch_4: Galactose ox 86.6 1.5 3.3E-05 27.5 4.1 35 162-197 14-48 (49)
53 PF13418 Kelch_4: Galactose ox 86.0 1 2.2E-05 28.4 3.0 38 206-243 7-45 (49)
54 smart00612 Kelch Kelch domain. 84.7 1.4 3.1E-05 26.9 3.3 22 176-198 14-35 (47)
55 KOG4341 F-box protein containi 82.6 0.33 7.2E-06 45.3 -0.5 37 3-39 74-110 (483)
56 PLN02772 guanylate kinase 81.6 8.7 0.00019 36.3 8.3 74 205-283 29-106 (398)
57 PF06433 Me-amine-dh_H: Methyl 80.4 26 0.00056 32.4 10.7 125 205-346 188-329 (342)
58 PF07646 Kelch_2: Kelch motif; 80.1 2.8 6E-05 26.4 3.3 32 162-193 13-46 (49)
59 COG3055 Uncharacterized protei 80.1 4.9 0.00011 36.9 5.9 193 177-378 113-366 (381)
60 PF10282 Lactonase: Lactonase, 79.0 55 0.0012 30.4 24.6 168 150-346 147-332 (345)
61 COG4257 Vgb Streptogramin lyas 75.9 34 0.00074 30.6 9.6 120 107-248 197-318 (353)
62 PF13415 Kelch_3: Galactose ox 75.8 6.6 0.00014 24.6 4.2 37 211-247 2-40 (49)
63 KOG0291 WD40-repeat-containing 74.6 67 0.0014 32.8 12.2 85 205-291 250-347 (893)
64 PRK11138 outer membrane biogen 74.3 80 0.0017 29.9 21.2 109 204-347 250-363 (394)
65 TIGR03300 assembly_YfgL outer 74.0 78 0.0017 29.6 19.8 110 205-349 236-350 (377)
66 PF08450 SGL: SMP-30/Gluconola 73.6 61 0.0013 28.2 14.8 155 151-338 4-165 (246)
67 PRK11138 outer membrane biogen 73.4 84 0.0018 29.7 18.2 183 109-341 120-316 (394)
68 KOG0647 mRNA export protein (c 73.1 46 0.001 30.0 9.8 74 263-351 40-115 (347)
69 TIGR03300 assembly_YfgL outer 72.7 84 0.0018 29.4 19.7 135 177-342 155-302 (377)
70 KOG0649 WD40 repeat protein [G 72.1 42 0.00092 29.3 9.1 64 300-376 117-180 (325)
71 KOG0316 Conserved WD40 repeat- 71.1 71 0.0015 27.9 14.5 184 109-342 28-218 (307)
72 PF07893 DUF1668: Protein of u 71.1 90 0.0019 29.1 14.1 99 229-346 88-215 (342)
73 PF13360 PQQ_2: PQQ-like domai 70.1 70 0.0015 27.4 14.1 134 178-342 4-145 (238)
74 TIGR03075 PQQ_enz_alc_DH PQQ-d 68.1 1.3E+02 0.0029 29.9 13.3 31 204-241 63-95 (527)
75 PF05096 Glu_cyclase_2: Glutam 67.9 90 0.0019 27.8 14.5 114 209-348 54-168 (264)
76 PRK11028 6-phosphogluconolacto 66.8 1E+02 0.0022 28.1 19.4 144 177-342 57-212 (330)
77 PRK11028 6-phosphogluconolacto 66.3 1.1E+02 0.0023 28.1 12.6 94 228-338 13-111 (330)
78 cd01207 Ena-Vasp Enabled-VASP- 63.9 32 0.00069 26.1 6.1 43 119-167 9-51 (111)
79 cd01206 Homer Homer type EVH1 62.1 22 0.00049 26.7 4.9 41 119-168 11-52 (111)
80 smart00564 PQQ beta-propeller 62.1 20 0.00044 19.8 3.9 24 309-342 6-29 (33)
81 PRK04043 tolB translocation pr 60.8 1.6E+02 0.0035 28.3 22.3 189 118-346 212-408 (419)
82 PF13570 PQQ_3: PQQ-like domai 60.5 10 0.00022 22.5 2.5 25 205-236 16-40 (40)
83 PF12458 DUF3686: ATPase invol 60.1 98 0.0021 29.5 9.7 136 108-282 237-383 (448)
84 PF01011 PQQ: PQQ enzyme repea 57.6 29 0.00063 20.3 4.1 17 326-342 7-23 (38)
85 PF13013 F-box-like_2: F-box-l 57.6 2.6 5.6E-05 31.9 -0.6 28 2-29 23-50 (109)
86 TIGR02276 beta_rpt_yvtn 40-res 57.4 37 0.0008 19.9 5.9 31 308-347 2-32 (42)
87 KOG2055 WD40 repeat protein [G 54.4 48 0.001 31.7 6.8 59 276-346 236-296 (514)
88 TIGR02658 TTQ_MADH_Hv methylam 53.2 2E+02 0.0043 27.0 12.6 105 229-349 29-148 (352)
89 KOG0639 Transducin-like enhanc 53.1 30 0.00065 33.4 5.3 78 260-352 474-552 (705)
90 PF02897 Peptidase_S9_N: Proly 52.8 2.1E+02 0.0046 27.2 22.2 153 177-346 252-412 (414)
91 KOG0295 WD40 repeat-containing 50.3 1.1E+02 0.0024 28.4 8.2 64 264-342 305-369 (406)
92 KOG0640 mRNA cleavage stimulat 49.4 2.1E+02 0.0045 26.2 11.9 129 210-361 272-405 (430)
93 TIGR03074 PQQ_membr_DH membran 49.3 3.4E+02 0.0074 28.5 14.0 31 204-241 188-220 (764)
94 TIGR03866 PQQ_ABC_repeats PQQ- 48.0 1.9E+02 0.0041 25.3 22.4 109 228-349 180-291 (300)
95 KOG0291 WD40-repeat-containing 47.9 3.4E+02 0.0073 28.1 20.8 112 205-341 439-554 (893)
96 PLN00181 protein SPA1-RELATED; 46.0 3.8E+02 0.0083 28.2 23.3 183 111-339 547-740 (793)
97 PF03088 Str_synth: Strictosid 45.5 54 0.0012 23.8 4.6 42 303-345 3-52 (89)
98 KOG1274 WD40 repeat protein [G 43.9 4.2E+02 0.009 28.0 20.6 69 262-342 149-223 (933)
99 KOG2502 Tub family proteins [G 43.5 15 0.00032 33.7 1.7 37 2-38 46-90 (355)
100 PRK05137 tolB translocation pr 42.4 3.2E+02 0.0069 26.2 13.7 122 208-345 163-285 (435)
101 KOG0649 WD40 repeat protein [G 41.3 2.5E+02 0.0055 24.8 13.3 126 210-369 126-263 (325)
102 KOG0293 WD40 repeat-containing 40.8 62 0.0013 30.6 5.2 61 262-340 323-387 (519)
103 KOG3545 Olfactomedin and relat 38.7 1.4E+02 0.0031 26.2 6.9 73 205-283 72-153 (249)
104 PRK04043 tolB translocation pr 38.5 3.7E+02 0.008 25.9 11.6 103 228-349 214-320 (419)
105 COG3386 Gluconolactonase [Carb 37.6 3.2E+02 0.007 25.0 12.2 113 210-342 36-156 (307)
106 PF02239 Cytochrom_D1: Cytochr 35.5 3.9E+02 0.0083 25.2 10.1 100 228-347 17-118 (369)
107 KOG0310 Conserved WD40 repeat- 34.9 4.3E+02 0.0094 25.6 14.9 192 125-363 8-207 (487)
108 KOG2048 WD40 repeat protein [G 34.0 4.9E+02 0.011 26.4 10.4 63 276-349 48-110 (691)
109 KOG0293 WD40 repeat-containing 34.0 4.3E+02 0.0093 25.3 14.9 89 261-364 405-494 (519)
110 TIGR02658 TTQ_MADH_Hv methylam 33.4 4.1E+02 0.0089 24.9 27.0 119 208-345 203-338 (352)
111 PF13859 BNR_3: BNR repeat-lik 31.7 4.1E+02 0.0089 24.4 9.2 150 205-363 125-296 (310)
112 TIGR03866 PQQ_ABC_repeats PQQ- 31.5 3.5E+02 0.0076 23.5 21.6 182 117-342 51-242 (300)
113 KOG0294 WD40 repeat-containing 31.1 4.2E+02 0.0092 24.3 11.9 75 205-294 47-125 (362)
114 PRK05137 tolB translocation pr 30.9 4.9E+02 0.011 25.0 20.9 193 118-346 225-420 (435)
115 PF14339 DUF4394: Domain of un 28.7 1.8E+02 0.0039 25.5 5.9 53 109-165 38-92 (236)
116 PF12217 End_beta_propel: Cata 28.5 3.7E+02 0.0081 24.0 7.7 61 208-271 198-258 (367)
117 KOG2321 WD40 repeat protein [G 28.0 6.3E+02 0.014 25.4 9.8 110 210-342 145-263 (703)
118 PRK04792 tolB translocation pr 27.6 5.7E+02 0.012 24.7 22.8 187 119-346 242-433 (448)
119 KOG3926 F-box proteins [Amino 27.5 27 0.00059 30.9 0.8 41 2-42 203-244 (332)
120 PF00568 WH1: WH1 domain; Int 27.1 2.3E+02 0.005 21.3 5.8 39 119-167 16-55 (111)
121 KOG0319 WD40-repeat-containing 26.1 7.5E+02 0.016 25.6 12.3 110 229-362 42-157 (775)
122 PTZ00421 coronin; Provisional 25.4 6.7E+02 0.014 24.8 22.8 201 109-342 87-295 (493)
123 KOG2048 WD40 repeat protein [G 24.9 7.5E+02 0.016 25.2 14.5 52 262-316 343-401 (691)
124 KOG1036 Mitotic spindle checkp 24.7 5.4E+02 0.012 23.5 15.0 93 228-342 76-168 (323)
125 KOG4378 Nuclear protein COP1 [ 24.6 2.9E+02 0.0063 27.0 6.9 65 264-345 178-247 (673)
126 PTZ00334 trans-sialidase; Prov 24.0 4.6E+02 0.01 27.5 8.7 150 205-361 264-431 (780)
127 KOG0271 Notchless-like WD40 re 23.9 2.8E+02 0.0061 26.2 6.5 44 276-342 138-192 (480)
128 KOG0283 WD40 repeat-containing 23.9 6.7E+02 0.014 26.0 9.6 97 107-220 378-482 (712)
129 KOG4649 PQQ (pyrrolo-quinoline 23.9 5.1E+02 0.011 23.3 7.7 95 228-349 34-135 (354)
130 KOG0283 WD40 repeat-containing 23.2 2.7E+02 0.0059 28.7 6.8 56 276-348 433-492 (712)
131 PTZ00420 coronin; Provisional 21.9 7.2E+02 0.016 25.1 9.6 65 262-341 136-201 (568)
132 COG4946 Uncharacterized protei 21.8 7.7E+02 0.017 24.2 16.5 143 176-346 286-439 (668)
133 KOG3669 Uncharacterized conser 21.8 8.3E+02 0.018 24.6 10.4 56 182-248 213-274 (705)
134 KOG0641 WD40 repeat protein [G 21.5 5.4E+02 0.012 22.3 8.6 74 255-342 186-266 (350)
135 KOG0650 WD40 repeat nucleolar 21.4 74 0.0016 31.6 2.4 32 298-339 608-639 (733)
136 PF05096 Glu_cyclase_2: Glutam 20.8 6.1E+02 0.013 22.7 16.8 144 174-348 65-214 (264)
137 KOG0300 WD40 repeat-containing 20.8 4.2E+02 0.0091 24.3 6.8 59 275-346 378-436 (481)
138 PF15408 PH_7: Pleckstrin homo 20.6 21 0.00045 25.4 -1.0 23 19-41 77-99 (104)
139 KOG0282 mRNA splicing factor [ 20.5 2.7E+02 0.0057 27.0 5.8 32 301-342 436-467 (503)
140 PF13645 YkuD_2: L,D-transpept 20.3 2.1E+02 0.0045 23.8 4.5 30 308-342 33-62 (176)
141 COG3055 Uncharacterized protei 20.1 2.6E+02 0.0056 26.1 5.5 44 176-221 317-360 (381)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.3e-34 Score=253.03 Aligned_cols=221 Identities=25% Similarity=0.397 Sum_probs=161.5
Q ss_pred eeCcCeeEEEecCCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEc
Q 016752 105 IDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSL 184 (383)
Q Consensus 105 ~~s~~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss 184 (383)
++|||||||+... ..++||||+||+++.||+++...... .....+||||+.+++||||++..... ......++||++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~ 77 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTL 77 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccc-ccceEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEe
Confidence 4799999998865 68999999999999999875431111 12257899999999999999976432 224578999999
Q ss_pred CCCceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceee-EecCCCcCCcCCeeeeEEEEECC
Q 016752 185 RSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQ-EVPLPHLEDKKNVLVMFVGNFSG 263 (383)
Q Consensus 185 ~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~L~~~~G 263 (383)
++++||.++ ..+........+|++||++||+.....+ .....|++||+++|+|+ .+++|........ ...|++++|
T Consensus 78 ~~~~Wr~~~-~~~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~-~~~L~~~~G 154 (230)
T TIGR01640 78 GSNSWRTIE-CSPPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVD-YLSLINYKG 154 (230)
T ss_pred CCCCccccc-cCCCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCcccccccc-ceEEEEECC
Confidence 999999987 3332222223599999999999976431 11237999999999999 5999976532211 357999999
Q ss_pred eEEEEEecCCCCcEEEEEeC----CceeeeEEEcC-CCC---ceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEe
Q 016752 264 CLYFSCLCNYPQPVDIWVLK----GCWTKAFSFHR-SVG---DYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYD 335 (383)
Q Consensus 264 ~L~~~~~~~~~~~l~iW~l~----~~W~~~~~i~~-~~~---~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~yd 335 (383)
+|+++........++||+|+ .+|+|.++|+. .+. ....|.++..+|+ |++.... .....+++||
T Consensus 155 ~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~-I~~~~~~-------~~~~~~~~y~ 226 (230)
T TIGR01640 155 KLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGE-IVLCCED-------ENPFYIFYYN 226 (230)
T ss_pred EEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCE-EEEEeCC-------CCceEEEEEe
Confidence 99999986543369999998 57999999985 222 2255888888765 5554210 1133499999
Q ss_pred CCCC
Q 016752 336 PQSQ 339 (383)
Q Consensus 336 l~~~ 339 (383)
++++
T Consensus 227 ~~~~ 230 (230)
T TIGR01640 227 VGEN 230 (230)
T ss_pred ccCC
Confidence 9875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.67 E-value=6.8e-15 Score=121.88 Aligned_cols=149 Identities=26% Similarity=0.494 Sum_probs=100.6
Q ss_pred ceeeCceEEEEEecCCCCCCccEEEEEECCCcee-eEecCCCcCC-cCCeeeeEEEEE-CCeEEEEEecCCCCcEEEEEe
Q 016752 206 GTFADGHVHWLVTNNPKDDIENLIVAFNLESEEF-QEVPLPHLED-KKNVLVMFVGNF-SGCLYFSCLCNYPQPVDIWVL 282 (383)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~-~~~~~~~~L~~~-~G~L~~~~~~~~~~~l~iW~l 282 (383)
+|++||++||++...... ....|++||+++|+| +.+++|.... ... ...|++. +|+||++........++||+|
T Consensus 1 gV~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~--~~~L~~v~~~~L~~~~~~~~~~~~~IWvm 77 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLPLPFCNDDDDD--SVSLSVVRGDCLCVLYQCDETSKIEIWVM 77 (164)
T ss_pred CEEECCEEEeeEEecCCC-CceEEEEEeccccccCCEECCCCccCccCC--EEEEEEecCCEEEEEEeccCCccEEEEEE
Confidence 689999999999876521 122799999999999 8899998765 222 4567544 789999987555447999999
Q ss_pred C------CceeeeEEEcCC-CCce----eEEEEEEeCCCEEEEEeccCCCccccCC-CcEEEEEeCCCCeEEEEEEEecc
Q 016752 283 K------GCWTKAFSFHRS-VGDY----VKALAYSKSEDKVLVDKFKYGEEDDDIN-RWELYWYDPQSQKAADQVTIHGV 350 (383)
Q Consensus 283 ~------~~W~~~~~i~~~-~~~~----~~~~~~~~~g~~v~l~~~~~~~~~~~~~-~~~~~~ydl~~~~~~~~v~~~~~ 350 (383)
+ .+|+|.++|+.. .... ..+..+..+++.+++..+...+ .. ...++.|+ +++.++ ++++...
T Consensus 78 ~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~----~~~~~~i~i~g-~~~~~~-~~~~~~~ 151 (164)
T PF07734_consen 78 KKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQ----REEKNKIYIVG-EDGKFI-EVDIEDK 151 (164)
T ss_pred eeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCC----ccceeEEEEEc-CCCEEE-EcccccC
Confidence 8 489999999962 2211 1222222333456665321110 11 15688888 888888 8877433
Q ss_pred CCCeeeEEEEEcc
Q 016752 351 PQGCRDTLVCVDS 363 (383)
Q Consensus 351 ~~~~~~~~~y~~s 363 (383)
...+..+..|+||
T Consensus 152 ~~~~~~~~~YvpS 164 (164)
T PF07734_consen 152 SSCWPSICNYVPS 164 (164)
T ss_pred CCCCCCEEEECCC
Confidence 2233678899987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.58 E-value=4.5e-14 Score=112.14 Aligned_cols=106 Identities=23% Similarity=0.380 Sum_probs=80.9
Q ss_pred ceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCC--CcEEEEEeC
Q 016752 206 GTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYP--QPVDIWVLK 283 (383)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~--~~l~iW~l~ 283 (383)
|+++||++||++.... .....|++||+++|+|+.|++|........ ...|.+++|+|+++...... ..++||+|+
T Consensus 1 gicinGvly~~a~~~~--~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~-~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSED--SDNNVIVSFDVRSEKFRFIKLPEDPYSSDC-SSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEECC--CCCcEEEEEEcCCceEEEEEeeeeeccccC-ccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 6899999999998722 345679999999999999999922211112 45799999999999876543 369999998
Q ss_pred ----CceeeeEEEcC-C-CC----ceeEEEEEEeCCCEEEE
Q 016752 284 ----GCWTKAFSFHR-S-VG----DYVKALAYSKSEDKVLV 314 (383)
Q Consensus 284 ----~~W~~~~~i~~-~-~~----~~~~~~~~~~~g~~v~l 314 (383)
++|++.+.+-+ . .. ....++++.++|++|+.
T Consensus 78 D~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 78 DYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 79999877544 2 11 46788999888877776
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.56 E-value=1.6e-12 Score=118.64 Aligned_cols=316 Identities=13% Similarity=0.086 Sum_probs=156.0
Q ss_pred CCCCcHHHHHHHHccCC-cccceeeeecchhhhhhcCChHHHHHHHhhccCCCCCeEEEecCCCCCCCCCcccccceeEe
Q 016752 1 MAGLPTDINIDILSRLS-IKCLLRFKCASKSFCSLIDSQEFIKIHLKRSIETNTNLSLILSGTPAPILDSSRYWNGKIFS 79 (383)
Q Consensus 1 ~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (383)
.++||+|||..|..||| .-++.|||+|||+||+.+.... ...... ..+.+++... .|.. .+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~-----~~~~~~--~~~~~~~~~~-~~~~--------~~~~ 67 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG-----KKNPFR--TRPLILFNPI-NPSE--------TLTD 67 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc-----ccCCcc--cccccccCcc-cCCC--------Cccc
Confidence 36899999999999998 5699999999999999766421 000000 0111111110 0000 0000
Q ss_pred ecCCCCCCccccCCCCCCCCCCeee---eeCcCeeEEEecC---CCcEEEEcCCccceeecCCCCCCCcCcc---ceeEE
Q 016752 80 ASLDSLNLGVELDHPFKNCKGRTPI---IDSCNGLIALKND---ENGIAFWNPSTKEHLILPKFWGDLKDKV---HRVVD 150 (383)
Q Consensus 80 ~~~~~~~~~~~l~~p~~~~~~~~~~---~~s~~GLll~~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~---~~~~~ 150 (383)
+...+.. +..+......+.+ -++..|+|.-... ...+.+.||+++....+|+-........ ....+
T Consensus 68 -~~~~~~~----~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y 142 (373)
T PLN03215 68 -DRSYISR----PGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAY 142 (373)
T ss_pred -ccccccc----ccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceE
Confidence 0000000 0000000000011 1345888876542 3678999999999777774322211000 00000
Q ss_pred EE-eeecC---CCCEEEEEEEEEeecCC-cccEEEEEEc------CCCceEEeccCCCeeeecCCcceeeCceEEEEEec
Q 016752 151 GF-GYDAV---NDDYKVFRLVQFVRENV-EYTEVSVYSL------RSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTN 219 (383)
Q Consensus 151 ~~-~~d~~---~~~ykVv~~~~~~~~~~-~~~~~~vyss------~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~ 219 (383)
.+ +.+.. ...|+.+.+......++ ....+-|+.. ..++|..++ ... ......|+++|.+|-+...
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~-~~~---~~~~DIi~~kGkfYAvD~~ 218 (373)
T PLN03215 143 QVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALK-QMG---YHFSDIIVHKGQTYALDSI 218 (373)
T ss_pred EEEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEcc-CCC---ceeeEEEEECCEEEEEcCC
Confidence 01 11100 01131111111111111 1112222221 247787775 322 1233679999999998654
Q ss_pred CCCCCCccEEEEEECCCceeeEecCCCc--C--CcCCeeeeEEEEECCeEEEEEecC---------------CCCcEEEE
Q 016752 220 NPKDDIENLIVAFNLESEEFQEVPLPHL--E--DKKNVLVMFVGNFSGCLYFSCLCN---------------YPQPVDIW 280 (383)
Q Consensus 220 ~~~~~~~~~il~fD~~~e~~~~i~~P~~--~--~~~~~~~~~L~~~~G~L~~~~~~~---------------~~~~l~iW 280 (383)
+. +.++|.+-+ .+.+..+.. . ...+. ...|+++.|.|++|.... ....++|+
T Consensus 219 G~-------l~~i~~~l~-i~~v~~~i~~~~~~g~~~~-~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vf 289 (373)
T PLN03215 219 GI-------VYWINSDLE-FSRFGTSLDENITDGCWTG-DRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVY 289 (373)
T ss_pred Ce-------EEEEecCCc-eeeecceecccccCCcccC-ceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEE
Confidence 43 777774322 122211110 0 00011 357999999999997631 11358899
Q ss_pred EeC---CceeeeEEEcC---CCC--c-eeEEE-EE-EeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEE--E
Q 016752 281 VLK---GCWTKAFSFHR---SVG--D-YVKAL-AY-SKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVT--I 347 (383)
Q Consensus 281 ~l~---~~W~~~~~i~~---~~~--~-~~~~~-~~-~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~--~ 347 (383)
.++ +.|+++.+++- .++ . ...+. .+ .-.++.||+. .+....+||++.++.. .+. +
T Consensus 290 klD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-----------dd~~~~v~~~~dg~~~-~~~~~~ 357 (373)
T PLN03215 290 KFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-----------EDTMPKVFKLDNGNGS-SIETTI 357 (373)
T ss_pred EEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-----------CCCcceEEECCCCCcc-ceEeec
Confidence 998 89999988874 122 0 11110 00 1146899999 5566789999999966 443 2
Q ss_pred eccCCCeeeEEEEEccc
Q 016752 348 HGVPQGCRDTLVCVDSL 364 (383)
Q Consensus 348 ~~~~~~~~~~~~y~~sl 364 (383)
.+...+| +-++.+|+
T Consensus 358 ~~~~~~~--~~~~~~~~ 372 (373)
T PLN03215 358 SESSQSS--FEMFVPSF 372 (373)
T ss_pred Cccccch--heeecccc
Confidence 2233333 34556655
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.96 E-value=1.1e-10 Score=74.70 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeecchhhhhhcCChHHHHH
Q 016752 1 MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKI 43 (383)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~ 43 (383)
|+.||+|++.+||..||++++.+++.|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 6799999999999999999999999999999999998866554
No 6
>PHA02713 hypothetical protein; Provisional
Probab=98.95 E-value=4.9e-08 Score=96.54 Aligned_cols=198 Identities=11% Similarity=0.097 Sum_probs=123.4
Q ss_pred CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCe
Q 016752 119 NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPY 198 (383)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~ 198 (383)
..+..+||.+++|..+|+++..+. ......++ + ||.+++... +......+++|++.++.|..++ .+|.
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~-----~~~~~~~~---g--~IYviGG~~-~~~~~~sve~Ydp~~~~W~~~~-~mp~ 387 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRC-----RFSLAVID---D--TIYAIGGQN-GTNVERTIECYTMGDDKWKMLP-DMPI 387 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhh-----ceeEEEEC---C--EEEEECCcC-CCCCCceEEEEECCCCeEEECC-CCCc
Confidence 357889999999999998875431 11112222 1 666666432 1123457999999999999887 6664
Q ss_pred eeecCCcceeeCceEEEEEecCCCC-----------------CCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEE
Q 016752 199 YILHGWDGTFADGHVHWLVTNNPKD-----------------DIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGN 260 (383)
Q Consensus 199 ~~~~~~~~v~~~G~lywl~~~~~~~-----------------~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~ 260 (383)
... ....+.++|.+|.+++..... .....+.+||+++++|+.++ +|.... ...+++
T Consensus 388 ~r~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-----~~~~~~ 461 (557)
T PHA02713 388 ALS-SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-----RPGVVS 461 (557)
T ss_pred ccc-cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-----cCcEEE
Confidence 321 225678899999998754210 01245899999999999874 333321 234789
Q ss_pred ECCeEEEEEecCCCC-cE-EEEEeC--C--ceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEE
Q 016752 261 FSGCLYFSCLCNYPQ-PV-DIWVLK--G--CWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWY 334 (383)
Q Consensus 261 ~~G~L~~~~~~~~~~-~l-~iW~l~--~--~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~y 334 (383)
.+|+|+++....... .. .+...+ . .|+.+..|+... .. .++..-++.||+.- .. .....+-+|
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~--~~~~~~~~~iyv~G----g~---~~~~~~e~y 530 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SA--LHTILHDNTIMMLH----CY---ESYMLQDTF 530 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--cc--ceeEEECCEEEEEe----ee---cceeehhhc
Confidence 999999998653211 11 245555 3 799887666411 11 22221245677761 00 011257899
Q ss_pred eCCCCeEEEEEE
Q 016752 335 DPQSQKAADQVT 346 (383)
Q Consensus 335 dl~~~~~~~~v~ 346 (383)
|++|++|. .+.
T Consensus 531 d~~~~~W~-~~~ 541 (557)
T PHA02713 531 NVYTYEWN-HIC 541 (557)
T ss_pred Cccccccc-chh
Confidence 99999999 663
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.95 E-value=4.8e-08 Score=96.40 Aligned_cols=200 Identities=15% Similarity=0.194 Sum_probs=131.7
Q ss_pred CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCe
Q 016752 119 NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPY 198 (383)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~ 198 (383)
+....+||.+.+|..+|++...+.. +|.-. -..+|.+++... +......+|.|+..++.|.... .++.
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~--------~~v~~--l~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~va-~m~~ 416 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSD--------FGVAV--LDGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPVA-PMLT 416 (571)
T ss_pred ceEEEecCCCCceeccCCccCcccc--------ceeEE--ECCEEEEEeccc-cccccccEEEecCCCCcccccC-CCCc
Confidence 4689999999999999998776421 22111 123666665433 3334568999999999999887 6654
Q ss_pred eeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEecCCC---
Q 016752 199 YILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLCNYP--- 274 (383)
Q Consensus 199 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~--- 274 (383)
....-..+.++|.+|-+++..........+-+||+.+++|+.++ ++.... ...+++.+|+|+++....+.
T Consensus 417 -~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-----~~g~a~~~~~iYvvGG~~~~~~~ 490 (571)
T KOG4441|consen 417 -RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-----GFGVAVLNGKIYVVGGFDGTSAL 490 (571)
T ss_pred -ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-----cceEEEECCEEEEECCccCCCcc
Confidence 22233678999999999986653324467999999999999764 443332 23578999999999886542
Q ss_pred CcEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEE
Q 016752 275 QPVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQV 345 (383)
Q Consensus 275 ~~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v 345 (383)
.+++..--+ ..|+.+..|... -...++..-++.+|+.-- -+....-..+-.||+++++|+ .+
T Consensus 491 ~~VE~ydp~~~~W~~v~~m~~~----rs~~g~~~~~~~ly~vGG----~~~~~~l~~ve~ydp~~d~W~-~~ 553 (571)
T KOG4441|consen 491 SSVERYDPETNQWTMVAPMTSP----RSAVGVVVLGGKLYAVGG----FDGNNNLNTVECYDPETDTWT-EV 553 (571)
T ss_pred ceEEEEcCCCCceeEcccCccc----cccccEEEECCEEEEEec----ccCccccceeEEcCCCCCcee-eC
Confidence 123334444 899988555542 123333333456777621 011122346899999999999 54
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.91 E-value=2.2e-07 Score=91.99 Aligned_cols=224 Identities=11% Similarity=0.127 Sum_probs=130.3
Q ss_pred cEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCee
Q 016752 120 GIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYY 199 (383)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~~ 199 (383)
....+||.|++|..+++.+..... ... ...+ + +|+.++...........++.|+..++.|..++ .+|..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~---~~~--a~l~----~-~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~-~m~~~ 341 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN---YAS--AIVD----N-EIIIAGGYNFNNPSLNKVYKINIENKIHVELP-PMIKN 341 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc---eEE--EEEC----C-EEEEEcCCCCCCCccceEEEEECCCCeEeeCC-CCcch
Confidence 467789999999999987764311 111 1111 1 55555542111123467899999999999887 66532
Q ss_pred eecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEecCCCC---
Q 016752 200 ILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQ--- 275 (383)
Q Consensus 200 ~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~--- 275 (383)
- .....+.++|.+|.+++.... .....+-.||+.+++|+.++ +|.... ....+.++|+|+++.......
T Consensus 342 R-~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~-----~~~~~~~~g~IYviGG~~~~~~~~ 414 (557)
T PHA02713 342 R-CRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALS-----SYGMCVLDQYIYIIGGRTEHIDYT 414 (557)
T ss_pred h-hceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccc-----cccEEEECCEEEEEeCCCcccccc
Confidence 1 122568899999999986432 12345899999999999874 444332 224678899999997643210
Q ss_pred ----------------cEEEEEeC---CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeC
Q 016752 276 ----------------PVDIWVLK---GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDP 336 (383)
Q Consensus 276 ----------------~l~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl 336 (383)
.-.+...+ ..|+.+..|+.. .....+++ -+ +.||+.- ...++ ......+..||+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~--r~~~~~~~-~~-~~IYv~G-G~~~~--~~~~~~ve~Ydp 487 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG--TIRPGVVS-HK-DDIYVVC-DIKDE--KNVKTCIFRYNT 487 (557)
T ss_pred cccccccccccccccccceEEEECCCCCeEeecCCCCcc--cccCcEEE-EC-CEEEEEe-CCCCC--CccceeEEEecC
Confidence 11344555 899977655431 11111222 23 4677761 00000 001124679999
Q ss_pred CC-CeEEEEEEEe-ccCCCeeeEEEEEccccccccC
Q 016752 337 QS-QKAADQVTIH-GVPQGCRDTLVCVDSLVSLAAY 370 (383)
Q Consensus 337 ~~-~~~~~~v~~~-~~~~~~~~~~~y~~sl~~~~~~ 370 (383)
++ ++|+ .+.-. ..... ..+..+.+.|.-+.++
T Consensus 488 ~~~~~W~-~~~~m~~~r~~-~~~~~~~~~iyv~Gg~ 521 (557)
T PHA02713 488 NTYNGWE-LITTTESRLSA-LHTILHDNTIMMLHCY 521 (557)
T ss_pred CCCCCee-EccccCccccc-ceeEEECCEEEEEeee
Confidence 99 8999 76422 22222 4455555555545443
No 9
>PHA03098 kelch-like protein; Provisional
Probab=98.88 E-value=3.5e-07 Score=90.72 Aligned_cols=199 Identities=13% Similarity=0.131 Sum_probs=121.5
Q ss_pred cEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCee
Q 016752 120 GIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYY 199 (383)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~~ 199 (383)
.++.+||.|++|..+|+.+..+.. ... ...+ + +++.++... .......+++|+..+++|+..+ .+|..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~---~~~--~~~~---~--~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~-~lp~~ 379 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKN---PGV--TVFN---N--RIYVIGGIY-NSISLNTVESWKPGESKWREEP-PLIFP 379 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccccc---ceE--EEEC---C--EEEEEeCCC-CCEecceEEEEcCCCCceeeCC-CcCcC
Confidence 688999999999999987654321 111 1122 1 455555322 1223457899999999999887 66542
Q ss_pred eecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEecCCCC---
Q 016752 200 ILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQ--- 275 (383)
Q Consensus 200 ~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~--- 275 (383)
. .....+.++|.+|.+++..........+..||+.+++|+.++ +|.... ....+..+|+|+++.......
T Consensus 380 r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 380 R-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-----GGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred C-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-----CceEEEECCEEEEECCccCCCCCc
Confidence 1 222567889999999874322122345899999999999874 443322 123567899999987643211
Q ss_pred -cEEEEEeC---CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEE
Q 016752 276 -PVDIWVLK---GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQV 345 (383)
Q Consensus 276 -~l~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v 345 (383)
.-.+|..+ .+|.+...++. +......+.. + +.|++.- ..+.......+..||+++++|+ .+
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~-~-~~iyv~G----G~~~~~~~~~v~~yd~~~~~W~-~~ 518 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLNF--PRINASLCIF-N-NKIYVVG----GDKYEYYINEIEVYDDKTNTWT-LF 518 (534)
T ss_pred ccceEEEecCCCCceeeCCCCCc--ccccceEEEE-C-CEEEEEc----CCcCCcccceeEEEeCCCCEEE-ec
Confidence 12367776 89997754442 1111112222 3 4566651 1110011347899999999999 65
No 10
>PLN02153 epithiospecifier protein
Probab=98.84 E-value=8.4e-07 Score=82.76 Aligned_cols=212 Identities=14% Similarity=0.087 Sum_probs=118.3
Q ss_pred CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCC--
Q 016752 119 NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDF-- 196 (383)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~-- 196 (383)
..++++||.+++|..+|+........ ........++ + +|+.+..... ......+++|+..++.|+.++ .+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~-~~~~~~~~~~---~--~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~-~~~~ 121 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRIS-CLGVRMVAVG---T--KLYIFGGRDE-KREFSDFYSYDTVKNEWTFLT-KLDE 121 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCc-cCceEEEEEC---C--EEEEECCCCC-CCccCcEEEEECCCCEEEEec-cCCC
Confidence 36899999999999988654221100 0011111111 1 5666654321 112346899999999999876 43
Q ss_pred ---CeeeecCCcceeeCceEEEEEecCCCC-----CCccEEEEEECCCceeeEecCCCcC-CcCCeeeeEEEEECCeEEE
Q 016752 197 ---PYYILHGWDGTFADGHVHWLVTNNPKD-----DIENLIVAFNLESEEFQEVPLPHLE-DKKNVLVMFVGNFSGCLYF 267 (383)
Q Consensus 197 ---p~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~~~il~fD~~~e~~~~i~~P~~~-~~~~~~~~~L~~~~G~L~~ 267 (383)
|.. ......+..+|.+|.+++..... ....-+.+||+.+++|..++.+... .... ...++..+|+|++
T Consensus 122 ~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~--~~~~~~~~~~iyv 198 (341)
T PLN02153 122 EGGPEA-RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRG--GAGFAVVQGKIWV 198 (341)
T ss_pred CCCCCC-ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCC--cceEEEECCeEEE
Confidence 211 11125678899999998754210 0112488999999999987643211 1111 2246778999998
Q ss_pred EEecCC---------CCcEEEEEeC---CceeeeEEEcC-CCCceeEEEEEEeCCCEEEEEeccCCCcc---------cc
Q 016752 268 SCLCNY---------PQPVDIWVLK---GCWTKAFSFHR-SVGDYVKALAYSKSEDKVLVDKFKYGEED---------DD 325 (383)
Q Consensus 268 ~~~~~~---------~~~l~iW~l~---~~W~~~~~i~~-~~~~~~~~~~~~~~g~~v~l~~~~~~~~~---------~~ 325 (383)
+..... ...-.+++++ .+|+++...+. ..+.......+. ++.||+.- .+. ..
T Consensus 199 ~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~G----G~~~~~~~~~~~~~ 272 (341)
T PLN02153 199 VYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFG----GEVWPDLKGHLGPG 272 (341)
T ss_pred EeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE--CCEEEEEC----cccCCccccccccc
Confidence 854210 0012355555 89998865432 111111222222 34566651 110 00
Q ss_pred CCCcEEEEEeCCCCeEEEEEEEe
Q 016752 326 INRWELYWYDPQSQKAADQVTIH 348 (383)
Q Consensus 326 ~~~~~~~~ydl~~~~~~~~v~~~ 348 (383)
.....++.||+++++|+ ++...
T Consensus 273 ~~~n~v~~~d~~~~~W~-~~~~~ 294 (341)
T PLN02153 273 TLSNEGYALDTETLVWE-KLGEC 294 (341)
T ss_pred cccccEEEEEcCccEEE-eccCC
Confidence 01126899999999999 87543
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=98.81 E-value=7.2e-07 Score=86.91 Aligned_cols=187 Identities=10% Similarity=0.012 Sum_probs=117.4
Q ss_pred cEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCee
Q 016752 120 GIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYY 199 (383)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~~ 199 (383)
....+||.+++|..+|+++..... ......+ + +|..++... ....++.|+..++.|..++ .+|..
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~-----~~~v~~~---~--~iYviGG~~----~~~sve~ydp~~n~W~~~~-~l~~~ 352 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLY-----ASGVPAN---N--KLYVVGGLP----NPTSVERWFHGDAAWVNMP-SLLKP 352 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhc-----ceEEEEC---C--EEEEECCcC----CCCceEEEECCCCeEEECC-CCCCC
Confidence 567789999999999988765321 1111222 1 566665321 1245899999999999887 66632
Q ss_pred eecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEE
Q 016752 200 ILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDI 279 (383)
Q Consensus 200 ~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~i 279 (383)
. ....++.++|.+|.+++.... ...+..||+.+++|+.++.++.... ....+..+|+|+++.. ..++
T Consensus 353 r-~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~----~~~~~~~~~~IYv~GG-----~~e~ 419 (480)
T PHA02790 353 R-CNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHY----KSCALVFGRRLFLVGR-----NAEF 419 (480)
T ss_pred C-cccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccc----cceEEEECCEEEEECC-----ceEE
Confidence 2 222578899999999876431 2347889999999998754332211 2246788999999874 2455
Q ss_pred EEeC-CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 280 WVLK-GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 280 W~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
+-.+ ..|+....++. +.....+++. + +.||+. |..+....-..+-.||+++++|+
T Consensus 420 ydp~~~~W~~~~~m~~--~r~~~~~~v~-~-~~IYvi----GG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 420 YCESSNTWTLIDDPIY--PRDNPELIIV-D-NKLLLI----GGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred ecCCCCcEeEcCCCCC--CccccEEEEE-C-CEEEEE----CCcCCCcccceEEEEECCCCeEE
Confidence 5555 89997665542 1111122222 3 467776 11110011246889999999998
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.79 E-value=3e-06 Score=78.40 Aligned_cols=234 Identities=15% Similarity=0.116 Sum_probs=131.6
Q ss_pred cEEEE-cCCcc-ceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCce----EEec
Q 016752 120 GIAFW-NPSTK-EHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSW----RRIR 193 (383)
Q Consensus 120 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~W----r~~~ 193 (383)
.+++. +|..+ +|..+++++..... .....++ + +|+.+.... .......++.|+..++.| +..+
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~-----~~~~~~~----~-~lyviGG~~-~~~~~~~v~~~d~~~~~w~~~~~~~~ 108 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAY-----GASVSVE----N-GIYYIGGSN-SSERFSSVYRITLDESKEELICETIG 108 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccc-----eEEEEEC----C-EEEEEcCCC-CCCCceeEEEEEEcCCceeeeeeEcC
Confidence 35555 45433 78888876654211 1112222 1 455555322 122345788999999988 4444
Q ss_pred cCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEecC
Q 016752 194 VDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLCN 272 (383)
Q Consensus 194 ~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~ 272 (383)
.+|... ....++.++|.+|.+.+...+ .....+.+||+.+++|+.++ +|..... ...++..+|+|+++....
T Consensus 109 -~lp~~~-~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~----~~~~~~~~~~iYv~GG~~ 181 (323)
T TIGR03548 109 -NLPFTF-ENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRV----QPVCVKLQNELYVFGGGS 181 (323)
T ss_pred -CCCcCc-cCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCC----cceEEEECCEEEEEcCCC
Confidence 455322 122567889999999875322 12345899999999999885 5643221 123567899999998754
Q ss_pred CCCcEEEEEeC---CceeeeEEEcC-CCCce-eEEEEEEeCCCEEEEEeccCCC--------------------------
Q 016752 273 YPQPVDIWVLK---GCWTKAFSFHR-SVGDY-VKALAYSKSEDKVLVDKFKYGE-------------------------- 321 (383)
Q Consensus 273 ~~~~l~iW~l~---~~W~~~~~i~~-~~~~~-~~~~~~~~~g~~v~l~~~~~~~-------------------------- 321 (383)
......+|..+ ..|.++..+.. ..+.. ....++.-.++.||+.= ...+
T Consensus 182 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (323)
T TIGR03548 182 NIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIG-GFNKDVYNDAVIDLATMKDESLKGYKKEYF 260 (323)
T ss_pred CccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEEC-CcCHHHHHHHHhhhhhccchhhhhhHHHHh
Confidence 32234566766 89997765432 11111 11111222234556541 0000
Q ss_pred ----ccccCCCcEEEEEeCCCCeEEEEEEEe-c-cCCCeeeEEEEEccccccccCCCCcc
Q 016752 322 ----EDDDINRWELYWYDPQSQKAADQVTIH-G-VPQGCRDTLVCVDSLVSLAAYAGRGV 375 (383)
Q Consensus 322 ----~~~~~~~~~~~~ydl~~~~~~~~v~~~-~-~~~~~~~~~~y~~sl~~~~~~~~~~~ 375 (383)
+++ .....+..||+++++|. .+.-. . .... ..+...-+.|.-+.+..++|+
T Consensus 261 ~~~~~~~-~~~~~v~~yd~~~~~W~-~~~~~p~~~r~~-~~~~~~~~~iyv~GG~~~pg~ 317 (323)
T TIGR03548 261 LKPPEWY-NWNRKILIYNVRTGKWK-SIGNSPFFARCG-AALLLTGNNIFSINGELKPGV 317 (323)
T ss_pred CCCcccc-CcCceEEEEECCCCeee-EcccccccccCc-hheEEECCEEEEEeccccCCc
Confidence 000 00246999999999999 76521 1 1222 346677777777777666654
No 13
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.76 E-value=9.7e-10 Score=70.81 Aligned_cols=43 Identities=42% Similarity=0.490 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHccCCcccceeeeecchhhhhhcCChHHHHHH
Q 016752 2 AGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKIH 44 (383)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~~ 44 (383)
.+||+|++.+||.+||++++.+++.|||+|++++.++.+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 5799999999999999999999999999999999999987654
No 14
>PLN02193 nitrile-specifier protein
Probab=98.74 E-value=2.7e-06 Score=82.69 Aligned_cols=216 Identities=9% Similarity=-0.010 Sum_probs=120.9
Q ss_pred cEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCee
Q 016752 120 GIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYY 199 (383)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~~ 199 (383)
.++++||.+.+|..+|+....+... ........++ + +++.+..... ......+++|++.++.|+.+. .++..
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~-~~~~~~v~~~----~-~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~-~~~~~ 265 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLS-CLGVRMVSIG----S-TLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLT-PVEEG 265 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCc-ccceEEEEEC----C-EEEEECCCCC-CCCCccEEEEECCCCEEEEcC-cCCCC
Confidence 5889999999999887542211100 0011111222 1 4555543211 123456899999999999886 43211
Q ss_pred --eecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcE
Q 016752 200 --ILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPV 277 (383)
Q Consensus 200 --~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l 277 (383)
.......+.+++.||.+.+.... ....-+.+||+.+++|+.++.|........ ...++..+|+++++........-
T Consensus 266 P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~-~~~~~~~~gkiyviGG~~g~~~~ 343 (470)
T PLN02193 266 PTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRG-GAGLEVVQGKVWVVYGFNGCEVD 343 (470)
T ss_pred CCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCC-CcEEEEECCcEEEEECCCCCccC
Confidence 11112456789999999875431 122348899999999998875432211111 22466789999998765432234
Q ss_pred EEEEeC---CceeeeEEEcC-CCCceeEEEEEEeCCCEEEEEeccCCCccccC-----CCcEEEEEeCCCCeEEEEEEEe
Q 016752 278 DIWVLK---GCWTKAFSFHR-SVGDYVKALAYSKSEDKVLVDKFKYGEEDDDI-----NRWELYWYDPQSQKAADQVTIH 348 (383)
Q Consensus 278 ~iW~l~---~~W~~~~~i~~-~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~-----~~~~~~~ydl~~~~~~~~v~~~ 348 (383)
.+|+++ .+|.++..++. ..+......++ -+ +.|++.-=...++.... ....++.||+.+++|+ ++...
T Consensus 344 dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~-~~~~~ 420 (470)
T PLN02193 344 DVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VG-KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE-RLDKF 420 (470)
T ss_pred ceEEEECCCCEEEEeccCCCCCCCcceeEEEE-EC-CEEEEECCccCCccccccCccceeccEEEEEcCcCEEE-EcccC
Confidence 577776 89998876532 12212222222 23 45666510000000000 0124899999999999 87643
No 15
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.64 E-value=5.1e-09 Score=64.92 Aligned_cols=39 Identities=46% Similarity=0.630 Sum_probs=36.8
Q ss_pred CcHHHHHHHHccCCcccceeeeecchhhhhhcCChHHHH
Q 016752 4 LPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIK 42 (383)
Q Consensus 4 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~ 42 (383)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 16
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.61 E-value=4.3e-06 Score=82.71 Aligned_cols=201 Identities=15% Similarity=0.169 Sum_probs=129.2
Q ss_pred CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCe
Q 016752 119 NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPY 198 (383)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~ 198 (383)
..+...||.+++|..+.+++.... ..+.+.- .+ +|..++....+......++.|++.++.|..++ .++.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~------~~~~~~~--~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a-~M~~ 369 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC------RVGVAVL--NG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA-PMNT 369 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc------cccEEEE--CC--EEEEEccccCCCcccceEEEecCCCCceeccC-CccC
Confidence 356688999999999998886532 1122221 11 66666544322335678999999999999876 5533
Q ss_pred eeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEecCCCC--
Q 016752 199 YILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQ-- 275 (383)
Q Consensus 199 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~-- 275 (383)
. ...-..+.++|.+|-+++... ...-..+-.||+.+++|.... .+.... ....++.+|+||++.......
T Consensus 370 ~-R~~~~v~~l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~r~-----~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 370 K-RSDFGVAVLDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTRRS-----GHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred c-cccceeEEECCEEEEEecccc-ccccccEEEecCCCCcccccCCCCccee-----eeEEEEECCEEEEEcCcCCCccc
Confidence 2 111256789999999998763 334446999999999999875 444221 335788999999998854321
Q ss_pred --cEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEE
Q 016752 276 --PVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVT 346 (383)
Q Consensus 276 --~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~ 346 (383)
+++.+--. ..|.....|... .....+++. ++.||..- .-+-...-..+-.||+++++|. .+.
T Consensus 443 l~sve~YDP~t~~W~~~~~M~~~--R~~~g~a~~--~~~iYvvG----G~~~~~~~~~VE~ydp~~~~W~-~v~ 507 (571)
T KOG4441|consen 443 LNSVECYDPETNTWTLIAPMNTR--RSGFGVAVL--NGKIYVVG----GFDGTSALSSVERYDPETNQWT-MVA 507 (571)
T ss_pred cceEEEEcCCCCceeecCCcccc--cccceEEEE--CCEEEEEC----CccCCCccceEEEEcCCCCcee-Ecc
Confidence 33333333 899988777752 112223332 35677761 1000011234889999999999 774
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.50 E-value=5.7e-05 Score=70.64 Aligned_cols=236 Identities=13% Similarity=0.113 Sum_probs=124.6
Q ss_pred CcEEEEc--CCccceeecCCCCC-CCcCccceeEEEEeeecCCCCEEEEEEEEEeecC-----CcccEEEEEEcCCCceE
Q 016752 119 NGIAFWN--PSTKEHLILPKFWG-DLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVREN-----VEYTEVSVYSLRSNSWR 190 (383)
Q Consensus 119 ~~~~V~N--P~T~~~~~LP~~~~-~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~-----~~~~~~~vyss~~~~Wr 190 (383)
..+++.+ |.+++|..+|+++. .+. .... ...+ + +|..++...... .....++.|+..+++|+
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~---~~~~--~~~~---~--~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRN---QAVA--AAID---G--KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcc---cceE--EEEC---C--EEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 4577776 47889999998763 221 1111 1122 1 566665432111 02346899999999999
Q ss_pred EeccCCCeeeecCCcce-eeCceEEEEEecCCCC---------------------------------CCccEEEEEECCC
Q 016752 191 RIRVDFPYYILHGWDGT-FADGHVHWLVTNNPKD---------------------------------DIENLIVAFNLES 236 (383)
Q Consensus 191 ~~~~~~p~~~~~~~~~v-~~~G~lywl~~~~~~~---------------------------------~~~~~il~fD~~~ 236 (383)
.+...+|... ....++ .++|.||.+++..... .....+.+||+.+
T Consensus 99 ~~~~~~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t 177 (346)
T TIGR03547 99 KLDTRSPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPST 177 (346)
T ss_pred cCCCCCCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCC
Confidence 8861222211 111233 6799999998753210 0014589999999
Q ss_pred ceeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEecCC--CCcEEEEEeC-----CceeeeEEEcCCC---Cce-eEEEE
Q 016752 237 EEFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLCNY--PQPVDIWVLK-----GCWTKAFSFHRSV---GDY-VKALA 304 (383)
Q Consensus 237 e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~--~~~l~iW~l~-----~~W~~~~~i~~~~---~~~-~~~~~ 304 (383)
++|+.++ +|..... ...++..+|+|+++..... ....++|..+ ..|.+...|+... +.. ....+
T Consensus 178 ~~W~~~~~~p~~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a 253 (346)
T TIGR03547 178 NQWRNLGENPFLGTA----GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFA 253 (346)
T ss_pred CceeECccCCCCcCC----CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEee
Confidence 9999884 4432111 2246788999999976532 1234555543 5899877665311 000 11112
Q ss_pred EEeCCCEEEEEe-c-cCCC-------ccccC----CCcEEEEEeCCCCeEEEEEEEeccCCCeeeEEEEEccccccccCC
Q 016752 305 YSKSEDKVLVDK-F-KYGE-------EDDDI----NRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAAYA 371 (383)
Q Consensus 305 ~~~~g~~v~l~~-~-~~~~-------~~~~~----~~~~~~~ydl~~~~~~~~v~~~~~~~~~~~~~~y~~sl~~~~~~~ 371 (383)
+.-+ +.||+.- . ..+. +.+.. .-..+-.||+++++|+ .+.-.-.+.....+......|.-+.+..
T Consensus 254 ~~~~-~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~-~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 254 GISN-GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWS-KVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred eEEC-CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccc-ccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 2223 5666651 0 0000 00000 0024678999999999 6632111111123334455555555443
No 18
>PHA03098 kelch-like protein; Provisional
Probab=98.45 E-value=1.9e-05 Score=78.45 Aligned_cols=225 Identities=12% Similarity=0.093 Sum_probs=125.3
Q ss_pred EEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCeee
Q 016752 121 IAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYI 200 (383)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~~~ 200 (383)
+.-.|+.+++|..++..+... . ......+ + +++.++...........+..|+..++.|...+ .+|..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~---~--~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~- 332 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHYVY----C--FGSVVLN---N--VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-ELIYP- 332 (534)
T ss_pred eeecchhhhhcccccCccccc----c--ceEEEEC---C--EEEEECCCcCCCCeeccEEEEeCCCCeeeECC-CCCcc-
Confidence 445688899998887554321 1 0111111 1 45555432221222346889999999998887 55532
Q ss_pred ecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEecCC--CCcE
Q 016752 201 LHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLCNY--PQPV 277 (383)
Q Consensus 201 ~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~--~~~l 277 (383)
......+.++|.+|.+++.... .....+..||+.+.+|+.++ +|.... ....+..+|+++++..... ...-
T Consensus 333 R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~-----~~~~~~~~~~iYv~GG~~~~~~~~~ 406 (534)
T PHA03098 333 RKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRY-----NPCVVNVNNLIYVIGGISKNDELLK 406 (534)
T ss_pred cccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCc-----cceEEEECCEEEEECCcCCCCcccc
Confidence 1122567889999999876532 12334889999999999874 444332 2245778999999977422 1112
Q ss_pred EEEEeC---CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEeccCCCe
Q 016752 278 DIWVLK---GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGC 354 (383)
Q Consensus 278 ~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~~~~~~ 354 (383)
.++.++ .+|.+...++.. .......+ . ++.||+.- ...+......-..+..||+++++|+ ++.-...+...
T Consensus 407 ~v~~yd~~t~~W~~~~~~p~~--r~~~~~~~-~-~~~iyv~G-G~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~ 480 (534)
T PHA03098 407 TVECFSLNTNKWSKGSPLPIS--HYGGCAIY-H-DGKIYVIG-GISYIDNIKVYNIVESYNPVTNKWT-ELSSLNFPRIN 480 (534)
T ss_pred eEEEEeCCCCeeeecCCCCcc--ccCceEEE-E-CCEEEEEC-CccCCCCCcccceEEEecCCCCcee-eCCCCCccccc
Confidence 455555 899987655431 11112222 2 35677651 0000000000124899999999999 76422221111
Q ss_pred eeEEEEEccccccccC
Q 016752 355 RDTLVCVDSLVSLAAY 370 (383)
Q Consensus 355 ~~~~~y~~sl~~~~~~ 370 (383)
.....+...|.-+.+.
T Consensus 481 ~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 481 ASLCIFNNKIYVVGGD 496 (534)
T ss_pred ceEEEECCEEEEEcCC
Confidence 3445555555555443
No 19
>PLN02153 epithiospecifier protein
Probab=98.38 E-value=0.0001 Score=68.70 Aligned_cols=163 Identities=14% Similarity=0.185 Sum_probs=95.5
Q ss_pred CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecC-----CcccEEEEEEcCCCceEEec
Q 016752 119 NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVREN-----VEYTEVSVYSLRSNSWRRIR 193 (383)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~-----~~~~~~~vyss~~~~Wr~~~ 193 (383)
..++++||.|.+|..+++........ .......... .+ |++.++...... .....+++|+..++.|+.++
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~-~R~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPE-ARTFHSMASD--EN--HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCC-CceeeEEEEE--CC--EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC
Confidence 46899999999999998652110000 0111111111 11 455554332110 11246899999999999876
Q ss_pred cCCCeee--ecCCcceeeCceEEEEEecCCC-------CCCccEEEEEECCCceeeEec----CCCcCCcCCeeeeEEEE
Q 016752 194 VDFPYYI--LHGWDGTFADGHVHWLVTNNPK-------DDIENLIVAFNLESEEFQEVP----LPHLEDKKNVLVMFVGN 260 (383)
Q Consensus 194 ~~~p~~~--~~~~~~v~~~G~lywl~~~~~~-------~~~~~~il~fD~~~e~~~~i~----~P~~~~~~~~~~~~L~~ 260 (383)
.+.... ......+.++|.+|.+.+.... ......+.+||+.+.+|+.++ .|.... ....+.
T Consensus 176 -~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~-----~~~~~~ 249 (341)
T PLN02153 176 -DPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS-----VFAHAV 249 (341)
T ss_pred -CCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc-----eeeeEE
Confidence 332111 1112457789999998753210 001234899999999999875 243321 224577
Q ss_pred ECCeEEEEEecCC--------CC--cEEEEEeC---CceeeeEEE
Q 016752 261 FSGCLYFSCLCNY--------PQ--PVDIWVLK---GCWTKAFSF 292 (383)
Q Consensus 261 ~~G~L~~~~~~~~--------~~--~l~iW~l~---~~W~~~~~i 292 (383)
.+++|+++..... .. .-++|.++ ..|+++...
T Consensus 250 ~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 250 VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred ECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence 8899999977421 11 12789998 899977543
No 20
>PLN02193 nitrile-specifier protein
Probab=98.37 E-value=8.9e-05 Score=72.15 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=121.3
Q ss_pred cEEEEcCCc----cceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCC-cccEEEEEEcCCCceEEecc
Q 016752 120 GIAFWNPST----KEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENV-EYTEVSVYSLRSNSWRRIRV 194 (383)
Q Consensus 120 ~~~V~NP~T----~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~-~~~~~~vyss~~~~Wr~~~~ 194 (383)
..|+++|.| .+|..+++....+........+ ..+ + +|+.+........ ....+++|+..++.|+.++.
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~--~~~----~-~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~ 210 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIA--QVG----N-KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPA 210 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccccEEE--EEC----C-EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCC
Confidence 467888877 7898887642211110011111 111 1 4555543211111 22458999999999997651
Q ss_pred --CCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecC----CCcCCcCCeeeeEEEEECCeEEEE
Q 016752 195 --DFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPL----PHLEDKKNVLVMFVGNFSGCLYFS 268 (383)
Q Consensus 195 --~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~----P~~~~~~~~~~~~L~~~~G~L~~~ 268 (383)
..|.........+.+++.||.+.+.... ....-+.+||+.+++|+.++. |.... ...++..+++|+++
T Consensus 211 ~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~-----~h~~~~~~~~iYv~ 284 (470)
T PLN02193 211 TGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRS-----FHSMAADEENVYVF 284 (470)
T ss_pred CCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCcc-----ceEEEEECCEEEEE
Confidence 1222111122467889999999875431 122348899999999998743 22221 22456789999999
Q ss_pred EecCCC-CcEEEEEeC---CceeeeEEEcC-CCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEE
Q 016752 269 CLCNYP-QPVDIWVLK---GCWTKAFSFHR-SVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAAD 343 (383)
Q Consensus 269 ~~~~~~-~~l~iW~l~---~~W~~~~~i~~-~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~ 343 (383)
...... ..-.+|.++ .+|..+..... ..+.....+.+. +++ |++.- .... .....+..||+++++|+
T Consensus 285 GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gk-iyviG-G~~g----~~~~dv~~yD~~t~~W~- 356 (470)
T PLN02193 285 GGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGK-VWVVY-GFNG----CEVDDVHYYDPVQDKWT- 356 (470)
T ss_pred CCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCc-EEEEE-CCCC----CccCceEEEECCCCEEE-
Confidence 765321 123456665 89986643211 111112222222 334 55541 0000 01246999999999999
Q ss_pred EEEEecc-CC--CeeeEEEEEcccccccc
Q 016752 344 QVTIHGV-PQ--GCRDTLVCVDSLVSLAA 369 (383)
Q Consensus 344 ~v~~~~~-~~--~~~~~~~y~~sl~~~~~ 369 (383)
++...+. +. ..+.+..+...|.-+.+
T Consensus 357 ~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 357 QVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred EeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 8754331 11 11334444455554444
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.36 E-value=0.00041 Score=65.63 Aligned_cols=158 Identities=19% Similarity=0.250 Sum_probs=89.8
Q ss_pred cEEEEEEcCCCceEEeccCCCeeeecCCcceeeCceEEEEEecCCC--CCCccEEEEEECCCceeeEec-CCCcCCc---
Q 016752 177 TEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPK--DDIENLIVAFNLESEEFQEVP-LPHLEDK--- 250 (383)
Q Consensus 177 ~~~~vyss~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~--~~~~~~il~fD~~~e~~~~i~-~P~~~~~--- 250 (383)
..+++|+..++.|+... .+|.........+.++|.||.+.+.... .........||+++.+|+.++ +|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 267 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQ 267 (376)
T ss_pred ceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcC
Confidence 46899999999999887 6664222222457789999999975321 112233556788999999874 4543211
Q ss_pred CCeeeeEEEEECCeEEEEEecCCC--------------------CcEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCC
Q 016752 251 KNVLVMFVGNFSGCLYFSCLCNYP--------------------QPVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSE 309 (383)
Q Consensus 251 ~~~~~~~L~~~~G~L~~~~~~~~~--------------------~~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g 309 (383)
........++.+|+|+++...... ...+++..+ ..|.+...++... ... .++.-+
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--~~~-~av~~~- 343 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--AYG-VSVSWN- 343 (376)
T ss_pred CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc--cce-EEEEeC-
Confidence 111012246789999998764311 023455555 8898776554321 111 222233
Q ss_pred CEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 310 DKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 310 ~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
+.||+.- +...-...-..+..|+++++++.
T Consensus 344 ~~iyv~G---G~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 344 NGVLLIG---GETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CEEEEEc---CCCCCCcEeeeEEEEEEcCCEEE
Confidence 4466651 10000011235788888887766
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=98.32 E-value=3.1e-05 Score=75.56 Aligned_cols=153 Identities=7% Similarity=-0.000 Sum_probs=98.2
Q ss_pred eCcCeeEEEecC---CCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEE
Q 016752 106 DSCNGLIALKND---ENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVY 182 (383)
Q Consensus 106 ~s~~GLll~~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vy 182 (383)
.+.+|-|.+..+ ......++|.+.+|..+|+++.... ......++. +|..++.... ....++.|
T Consensus 315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~-----~~~~~~~~g-----~IYviGG~~~---~~~~ve~y 381 (480)
T PHA02790 315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC-----NPAVASINN-----VIYVIGGHSE---TDTTTEYL 381 (480)
T ss_pred EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc-----ccEEEEECC-----EEEEecCcCC---CCccEEEE
Confidence 345666654432 2456778999999999999876532 111222221 5666654321 12568999
Q ss_pred EcCCCceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEEE
Q 016752 183 SLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGNF 261 (383)
Q Consensus 183 ss~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~ 261 (383)
+++++.|+..+ .++.... ....+.++|.+|.+++. .-.||+++++|+.++ +|.... ...+++.
T Consensus 382 dp~~~~W~~~~-~m~~~r~-~~~~~~~~~~IYv~GG~---------~e~ydp~~~~W~~~~~m~~~r~-----~~~~~v~ 445 (480)
T PHA02790 382 LPNHDQWQFGP-STYYPHY-KSCALVFGRRLFLVGRN---------AEFYCESSNTWTLIDDPIYPRD-----NPELIIV 445 (480)
T ss_pred eCCCCEEEeCC-CCCCccc-cceEEEECCEEEEECCc---------eEEecCCCCcEeEcCCCCCCcc-----ccEEEEE
Confidence 99999999887 5553221 22567899999998742 667999999999875 332221 2357889
Q ss_pred CCeEEEEEecCCC---CcEEEEEeC-Ccee
Q 016752 262 SGCLYFSCLCNYP---QPVDIWVLK-GCWT 287 (383)
Q Consensus 262 ~G~L~~~~~~~~~---~~l~iW~l~-~~W~ 287 (383)
+|+|+++...... ..++.+-.+ .+|+
T Consensus 446 ~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 446 DNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred CCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 9999999875321 234444444 7886
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.32 E-value=0.00021 Score=67.61 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=94.1
Q ss_pred CcEEEEcCC--ccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEee-cC----CcccEEEEEEcCCCceEE
Q 016752 119 NGIAFWNPS--TKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVR-EN----VEYTEVSVYSLRSNSWRR 191 (383)
Q Consensus 119 ~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~-~~----~~~~~~~vyss~~~~Wr~ 191 (383)
..+++.++. +++|..+|+.+..... .... ...+ + +|..++.... .. .....++.|+..++.|+.
T Consensus 50 ~~~~~~d~~~~~~~W~~l~~~p~~~r~--~~~~--v~~~---~--~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~ 120 (376)
T PRK14131 50 TSWYKLDLNAPSKGWTKIAAFPGGPRE--QAVA--AFID---G--KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQK 120 (376)
T ss_pred CeEEEEECCCCCCCeEECCcCCCCCcc--cceE--EEEC---C--EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEe
Confidence 456677664 5789999876532111 1111 1111 2 4555543221 00 113568999999999998
Q ss_pred eccCCCeeeecCCccee-eCceEEEEEecCCCC---------------------------------CCccEEEEEECCCc
Q 016752 192 IRVDFPYYILHGWDGTF-ADGHVHWLVTNNPKD---------------------------------DIENLIVAFNLESE 237 (383)
Q Consensus 192 ~~~~~p~~~~~~~~~v~-~~G~lywl~~~~~~~---------------------------------~~~~~il~fD~~~e 237 (383)
+....|... ....++. .+|.||.+++..... .....+..||+.++
T Consensus 121 ~~~~~p~~~-~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~ 199 (376)
T PRK14131 121 LDTRSPVGL-AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN 199 (376)
T ss_pred CCCCCCCcc-cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC
Confidence 862122221 1112344 799999998753200 01245999999999
Q ss_pred eeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEecC--CCCcEEEEEeC-----CceeeeEEEcC
Q 016752 238 EFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLCN--YPQPVDIWVLK-----GCWTKAFSFHR 294 (383)
Q Consensus 238 ~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~--~~~~l~iW~l~-----~~W~~~~~i~~ 294 (383)
+|+.+. +|.... . ...++..+++|+++.... .....++|..+ ..|.++..|+.
T Consensus 200 ~W~~~~~~p~~~~-~---~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~ 260 (376)
T PRK14131 200 QWKNAGESPFLGT-A---GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP 260 (376)
T ss_pred eeeECCcCCCCCC-C---cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC
Confidence 999874 443221 1 124677899999998642 22345666543 79998877654
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.23 E-value=0.0008 Score=62.91 Aligned_cols=117 Identities=18% Similarity=0.309 Sum_probs=72.8
Q ss_pred cEEEEEEcCCCceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEE--EEECCCceeeEec-CCCcCC--cC
Q 016752 177 TEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIV--AFNLESEEFQEVP-LPHLED--KK 251 (383)
Q Consensus 177 ~~~~vyss~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il--~fD~~~e~~~~i~-~P~~~~--~~ 251 (383)
..+++|+..+++|+.++ .+|.........+.++|.||.+.+..........+. .+|+++++|+.++ +|.... ..
T Consensus 168 ~~v~~YDp~t~~W~~~~-~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG-ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeECc-cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 57999999999999987 666422222245678999999987642111112243 4455777998763 443221 11
Q ss_pred CeeeeEEEEECCeEEEEEecCC--------------------CCcEEEEEeC-CceeeeEEEcC
Q 016752 252 NVLVMFVGNFSGCLYFSCLCNY--------------------PQPVDIWVLK-GCWTKAFSFHR 294 (383)
Q Consensus 252 ~~~~~~L~~~~G~L~~~~~~~~--------------------~~~l~iW~l~-~~W~~~~~i~~ 294 (383)
.......+..+|+|+++..... ....++|..+ ..|+++..++.
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence 1102235678999999976421 0145777777 89998876654
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.13 E-value=0.00075 Score=62.44 Aligned_cols=137 Identities=8% Similarity=-0.046 Sum_probs=82.7
Q ss_pred CcEEEEcCCccce----eecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEecc
Q 016752 119 NGIAFWNPSTKEH----LILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRV 194 (383)
Q Consensus 119 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~ 194 (383)
..++.+|+.+++| ..+|+.+..... .....++ + +|..+..... ......+++|+..++.|..++
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-----~~~~~~~---~--~iYv~GG~~~-~~~~~~v~~yd~~~~~W~~~~- 155 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFEN-----GSACYKD---G--TLYVGGGNRN-GKPSNKSYLFNLETQEWFELP- 155 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccC-----ceEEEEC---C--EEEEEeCcCC-CccCceEEEEcCCCCCeeECC-
Confidence 4678889999987 677776654311 1111222 1 5555553211 123457899999999999887
Q ss_pred CCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCC-c-C--CcCCeeeeEEEEECCeEEEEEe
Q 016752 195 DFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPH-L-E--DKKNVLVMFVGNFSGCLYFSCL 270 (383)
Q Consensus 195 ~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~-~-~--~~~~~~~~~L~~~~G~L~~~~~ 270 (383)
.+|.........+.++|.||.+++.... ...-+.+||+++++|+.++... . . .... ...++..+|+|+++..
T Consensus 156 ~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~--~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 156 DFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLG--AASIKINESLLLCIGG 231 (323)
T ss_pred CCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccc--eeEEEECCCEEEEECC
Confidence 5553222222456889999999875431 1123689999999999875321 1 0 0011 1234556789988865
Q ss_pred c
Q 016752 271 C 271 (383)
Q Consensus 271 ~ 271 (383)
.
T Consensus 232 ~ 232 (323)
T TIGR03548 232 F 232 (323)
T ss_pred c
Confidence 4
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.84 E-value=0.00066 Score=58.51 Aligned_cols=227 Identities=12% Similarity=0.124 Sum_probs=122.2
Q ss_pred CcCeeEEEecCCCcEEEEcCCccceeecCCCCCCCcCc--c------ceeEEEEeeecCCCCEEEEEEEEEeecCCcccE
Q 016752 107 SCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDK--V------HRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTE 178 (383)
Q Consensus 107 s~~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~--~------~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~ 178 (383)
.|.|-.--...+-.+.|.|..+-+|..+|+.-.+.... + .+--....|+. |+..-+...++......
T Consensus 32 YCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-----~~yvWGGRND~egaCN~ 106 (392)
T KOG4693|consen 32 YCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-----KAYVWGGRNDDEGACNL 106 (392)
T ss_pred cccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-----eEEEEcCccCcccccce
Confidence 34444432333447899999999999999842221100 0 00000111111 22222222222233456
Q ss_pred EEEEEcCCCceEEeccC--CCeeeecCCcceeeCceEEEEEecCCC-CCCccEEEEEECCCceeeEec---CCCcCCcCC
Q 016752 179 VSVYSLRSNSWRRIRVD--FPYYILHGWDGTFADGHVHWLVTNNPK-DDIENLIVAFNLESEEFQEVP---LPHLEDKKN 252 (383)
Q Consensus 179 ~~vyss~~~~Wr~~~~~--~p~~~~~~~~~v~~~G~lywl~~~~~~-~~~~~~il~fD~~~e~~~~i~---~P~~~~~~~ 252 (383)
+.-|+.+++.|+..++. .|.. ....++++++..+|-+.+..+. .....-+.+||+++.+|+.+. -|+...+.+
T Consensus 107 Ly~fDp~t~~W~~p~v~G~vPga-RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH 185 (392)
T KOG4693|consen 107 LYEFDPETNVWKKPEVEGFVPGA-RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH 185 (392)
T ss_pred eeeeccccccccccceeeecCCc-cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh
Confidence 67899999999877621 2211 1223678889999988865432 111123899999999999984 454443322
Q ss_pred eeeeEEEEECCeEEEEEecCC----------CCcEEEEEeC---CceeeeEEEcCC-CC-ceeEEEEEEeCCCEEEEE-e
Q 016752 253 VLVMFVGNFSGCLYFSCLCNY----------PQPVDIWVLK---GCWTKAFSFHRS-VG-DYVKALAYSKSEDKVLVD-K 316 (383)
Q Consensus 253 ~~~~~L~~~~G~L~~~~~~~~----------~~~l~iW~l~---~~W~~~~~i~~~-~~-~~~~~~~~~~~g~~v~l~-~ 316 (383)
...+.+|..++.....+ ...-+|-.|+ +.|.....-.+. .+ ...+.+++ ||+ +++- -
T Consensus 186 ----~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY--ng~-~Y~FGG 258 (392)
T KOG4693|consen 186 ----TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY--NGK-MYMFGG 258 (392)
T ss_pred ----hhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE--cce-EEEecc
Confidence 23456677777754321 1122344444 999977433331 11 22233333 443 4443 1
Q ss_pred -ccCCCccccCCCcEEEEEeCCCCeEEEEEEEeccC
Q 016752 317 -FKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVP 351 (383)
Q Consensus 317 -~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~~~ 351 (383)
+...| -.-..+++||++|..|. .++..|+.
T Consensus 259 Yng~ln----~HfndLy~FdP~t~~W~-~I~~~Gk~ 289 (392)
T KOG4693|consen 259 YNGTLN----VHFNDLYCFDPKTSMWS-VISVRGKY 289 (392)
T ss_pred cchhhh----hhhcceeecccccchhe-eeeccCCC
Confidence 11111 11235999999999999 99888753
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.73 E-value=0.0014 Score=60.01 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=121.7
Q ss_pred CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCC----cccEEEEEEcCCCceEEecc
Q 016752 119 NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENV----EYTEVSVYSLRSNSWRRIRV 194 (383)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~----~~~~~~vyss~~~~Wr~~~~ 194 (383)
+.+|++|--+.+|+.+-.+..+.++ +.......|++ +-.+.-+.+.+.+. ....+.+|+..++.|..+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pR----sshq~va~~s~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~- 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPR----SSHQAVAVPSN--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE- 170 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCC----ccceeEEeccC--eEEEeccccCCcchhhhhhhhheeeeeeccchheeec-
Confidence 4799999999999987544333222 22223333322 22222222221111 2345678999999999887
Q ss_pred CCCeeee--cCCcceeeCceEEEEEecCCC---CCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEE-CCeEEEE
Q 016752 195 DFPYYIL--HGWDGTFADGHVHWLVTNNPK---DDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNF-SGCLYFS 268 (383)
Q Consensus 195 ~~p~~~~--~~~~~v~~~G~lywl~~~~~~---~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~-~G~L~~~ 268 (383)
.+.... .+.+.|.....|..+++-++. ...-.-+.+||+++=+|+.+..+........ -+.+.+. +|.+++-
T Consensus 171 -~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRS-Gcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 171 -FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRS-GCQFSVTPQGGIVVY 248 (521)
T ss_pred -cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCC-cceEEecCCCcEEEE
Confidence 222111 112445554444444432221 0011128999999999999875432211100 2345565 7777666
Q ss_pred Eec----------CCCCcEEEEEeC--------CceeeeEEEcC-CCCceeEEEEEEeCCCEEEEEe-ccCCCccccC--
Q 016752 269 CLC----------NYPQPVDIWVLK--------GCWTKAFSFHR-SVGDYVKALAYSKSEDKVLVDK-FKYGEEDDDI-- 326 (383)
Q Consensus 269 ~~~----------~~~~~l~iW~l~--------~~W~~~~~i~~-~~~~~~~~~~~~~~g~~v~l~~-~~~~~~~~~~-- 326 (383)
... .+...-.+|.|+ ..|.++..+++ .-+..-.-+++++++..+++.- +-..+++-..
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g 328 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSG 328 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhh
Confidence 542 122355799998 46787776665 2233445577777777777752 1111111111
Q ss_pred -CCcEEEEEeCCCCeEEEEEEEecc
Q 016752 327 -NRWELYWYDPQSQKAADQVTIHGV 350 (383)
Q Consensus 327 -~~~~~~~ydl~~~~~~~~v~~~~~ 350 (383)
--.-|+.||+..++|. ..++++.
T Consensus 329 ~F~NDLy~fdlt~nrW~-~~qlq~~ 352 (521)
T KOG1230|consen 329 EFFNDLYFFDLTRNRWS-EGQLQGK 352 (521)
T ss_pred hhhhhhhheecccchhh-HhhhccC
Confidence 1234899999999999 7666654
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.38 E-value=0.025 Score=55.29 Aligned_cols=215 Identities=14% Similarity=0.082 Sum_probs=120.1
Q ss_pred cEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEecc--CCC
Q 016752 120 GIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRV--DFP 197 (383)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~--~~p 197 (383)
.++|+|-.++.|.....................+ + +++.++...........+..|+..++.|+.+.. +.|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~------~-~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P 161 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG------D-KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPP 161 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC------C-eEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCC
Confidence 4999999998888666543332111111222221 2 344443322112234578999999999998872 111
Q ss_pred eeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecC-CC-C
Q 016752 198 YYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCN-YP-Q 275 (383)
Q Consensus 198 ~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~-~~-~ 275 (383)
. .......+.++.++|..++.........-+.+||+++.+|..+..........+ ...++..+++++++.... .. .
T Consensus 162 ~-~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~-gH~~~~~~~~~~v~gG~~~~~~~ 239 (482)
T KOG0379|consen 162 P-PRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY-GHAMVVVGNKLLVFGGGDDGDVY 239 (482)
T ss_pred C-CcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC-CceEEEECCeEEEEeccccCCce
Confidence 1 111125566677888887665433244569999999999999854332211111 124677889998887654 21 1
Q ss_pred cEEEEEeC---CceeeeEEEcC-CCCceeEEEEEEeCCCEEEEEeccCCCccccC-CCcEEEEEeCCCCeEEEEEEEec
Q 016752 276 PVDIWVLK---GCWTKAFSFHR-SVGDYVKALAYSKSEDKVLVDKFKYGEEDDDI-NRWELYWYDPQSQKAADQVTIHG 349 (383)
Q Consensus 276 ~l~iW~l~---~~W~~~~~i~~-~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~-~~~~~~~ydl~~~~~~~~v~~~~ 349 (383)
-=.+|.|+ .+|.+.....- .-+...+...+. |+.+++-. +...... .-..++.+|++++.|. .+...+
T Consensus 240 l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~g---G~~~~~~~~l~~~~~l~~~~~~w~-~~~~~~ 312 (482)
T KOG0379|consen 240 LNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFG---GGTDPKQEPLGDLYGLDLETLVWS-KVESVG 312 (482)
T ss_pred ecceEeeecccceeeeccccCCCCCCcceeeeEEE--CCEEEEEc---CCccccccccccccccccccccee-eeeccc
Confidence 23699999 67774433332 112333444432 34445442 1111001 2446899999999999 775444
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=8.7e-05 Score=65.21 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHccCCcccceeeeecchhhhhhcCChHH
Q 016752 2 AGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEF 40 (383)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F 40 (383)
..|||||++.||+.||.|+|.++..|||+|+.+.++...
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 579999999999999999999999999999999887664
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.12 E-value=0.034 Score=54.30 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=102.2
Q ss_pred CeeEEEecCC------CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEE
Q 016752 109 NGLIALKNDE------NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVY 182 (383)
Q Consensus 109 ~GLll~~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vy 182 (383)
+.|+++.... .++...|+.|++|..+.+....+.....-.. .+++ + ||+.++......+....+.||
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~--~~~g----~-~l~vfGG~~~~~~~~ndl~i~ 195 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSA--TVVG----T-KLVVFGGIGGTGDSLNDLHIY 195 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceE--EEEC----C-EEEEECCccCcccceeeeeee
Confidence 5555555432 3799999999999988765442211111111 2222 2 555554332222246789999
Q ss_pred EcCCCceEEeccCCC-eeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec----CCCcCCcCCeeeeE
Q 016752 183 SLRSNSWRRIRVDFP-YYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP----LPHLEDKKNVLVMF 257 (383)
Q Consensus 183 ss~~~~Wr~~~~~~p-~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~----~P~~~~~~~~~~~~ 257 (383)
+..+.+|..+.+.-+ .........+.+++.++.+.+...+...-.-+..||+.+.+|..++ .|... + ...
T Consensus 196 d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R----~-~h~ 270 (482)
T KOG0379|consen 196 DLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR----S-GHS 270 (482)
T ss_pred ccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc----c-eee
Confidence 999999998873211 1111222456667776666655422222233899999999998432 22222 1 234
Q ss_pred EEEECCeEEEEEecCCC---CcEEEEEeC---CceeeeEEEc
Q 016752 258 VGNFSGCLYFSCLCNYP---QPVDIWVLK---GCWTKAFSFH 293 (383)
Q Consensus 258 L~~~~G~L~~~~~~~~~---~~l~iW~l~---~~W~~~~~i~ 293 (383)
++..+..+.++...... .--++|.|+ ..|.++....
T Consensus 271 ~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 271 LTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred eEEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 56666777777765432 256789988 8999888777
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.06 E-value=0.015 Score=50.41 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=75.3
Q ss_pred cccEEEEEEcCCCceEEecc-CCCeeeecCCcceeeCceEEEEEecCCCC--------CCccEEEEEECCCceeeEec--
Q 016752 175 EYTEVSVYSLRSNSWRRIRV-DFPYYILHGWDGTFADGHVHWLVTNNPKD--------DIENLIVAFNLESEEFQEVP-- 243 (383)
Q Consensus 175 ~~~~~~vyss~~~~Wr~~~~-~~p~~~~~~~~~v~~~G~lywl~~~~~~~--------~~~~~il~fD~~~e~~~~i~-- 243 (383)
....+.+++..+-.||.+.+ ..|........++.++|.+|-+.+..++. ..-.-|++||+.++.|...+
T Consensus 155 FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~ 234 (392)
T KOG4693|consen 155 FSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN 234 (392)
T ss_pred hhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC
Confidence 34567788888999999872 23333223336778899999998765431 11224999999999998753
Q ss_pred --CCCcCCcCCeeeeEEEEECCeEEEEEecCCC---CcEEEEEeC---CceeeeEEE
Q 016752 244 --LPHLEDKKNVLVMFVGNFSGCLYFSCLCNYP---QPVDIWVLK---GCWTKAFSF 292 (383)
Q Consensus 244 --~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~---~~l~iW~l~---~~W~~~~~i 292 (383)
+|.....+ ..-+.+|++++....+.. .--++|..+ ..|.+...=
T Consensus 235 ~~~P~GRRSH-----S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 235 TMKPGGRRSH-----STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVR 286 (392)
T ss_pred CcCCCccccc-----ceEEEcceEEEecccchhhhhhhcceeecccccchheeeecc
Confidence 33333322 346789999999876541 123689998 788866533
No 32
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.79 E-value=0.00035 Score=61.66 Aligned_cols=46 Identities=13% Similarity=0.315 Sum_probs=40.3
Q ss_pred CCCCcHHHHHHHHccCC-----cccceeeeecchhhhhhcCChHHHHHHHh
Q 016752 1 MAGLPTDINIDILSRLS-----IKCLLRFKCASKSFCSLIDSQEFIKIHLK 46 (383)
Q Consensus 1 ~~~LP~Dll~eIL~rLP-----~~sl~r~r~VcK~W~~li~~~~F~~~~~~ 46 (383)
|+.||||+|.+||.++= ..+|.++.+|||.|+-...+|.|.+..+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 46899999999998764 59999999999999999999999776544
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.14 E-value=0.12 Score=47.69 Aligned_cols=142 Identities=8% Similarity=0.084 Sum_probs=82.8
Q ss_pred EEEEEEcCCCceEEeccCCCeeeecCC--cceee-CceEEEEEecCCCC-----CCccEEEEEECCCceeeEecCCCcCC
Q 016752 178 EVSVYSLRSNSWRRIRVDFPYYILHGW--DGTFA-DGHVHWLVTNNPKD-----DIENLIVAFNLESEEFQEVPLPHLED 249 (383)
Q Consensus 178 ~~~vyss~~~~Wr~~~~~~p~~~~~~~--~~v~~-~G~lywl~~~~~~~-----~~~~~il~fD~~~e~~~~i~~P~~~~ 249 (383)
.+..|+-+++.|+.+. .|......+ .+|.+ .|.+|.++++.... +.-.-+..||+.+.+|..+.++....
T Consensus 99 dLy~Yn~k~~eWkk~~--spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVV--SPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeEEeccccceeEec--cCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 4678899999999886 333222222 34444 47777766654421 11112789999999999998876542
Q ss_pred cCCeeeeEEEEECCeEEEEEecCCCC-c----EEEEEeC---CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCC
Q 016752 250 KKNVLVMFVGNFSGCLYFSCLCNYPQ-P----VDIWVLK---GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGE 321 (383)
Q Consensus 250 ~~~~~~~~L~~~~G~L~~~~~~~~~~-~----l~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~ 321 (383)
-.+ --+++.++..|.++....+.. . =.||+.+ ..|.+... +-.. | .+-.++-|..
T Consensus 177 ~RS--GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~-----P---tpRSGcq~~v------ 239 (521)
T KOG1230|consen 177 PRS--GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAG-----P---TPRSGCQFSV------ 239 (521)
T ss_pred CCc--cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCC-----C---CCCCcceEEe------
Confidence 221 125677888888776542211 1 1466655 78887664 2100 1 1122344444
Q ss_pred ccccCCCcEEEEEeCCCCeEE
Q 016752 322 EDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 322 ~~~~~~~~~~~~ydl~~~~~~ 342 (383)
..++++++|---++...
T Consensus 240 ----tpqg~i~vyGGYsK~~~ 256 (521)
T KOG1230|consen 240 ----TPQGGIVVYGGYSKQRV 256 (521)
T ss_pred ----cCCCcEEEEcchhHhhh
Confidence 25677888877666643
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.04 E-value=0.0019 Score=57.70 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=39.0
Q ss_pred CCCCc----HHHHHHHHccCCcccceeeeecchhhhhhcCChHHHHH
Q 016752 1 MAGLP----TDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIKI 43 (383)
Q Consensus 1 ~~~LP----~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~ 43 (383)
|..|| +++.+.||+.|...+|..+..|||+|+.+++++-..+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 35689 99999999999999999999999999999999886553
No 35
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.50 E-value=0.44 Score=44.62 Aligned_cols=107 Identities=13% Similarity=0.187 Sum_probs=71.8
Q ss_pred cEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEeC-CceeeeEEEcCCCCceeEEEEE
Q 016752 227 NLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLK-GCWTKAFSFHRSVGDYVKALAY 305 (383)
Q Consensus 227 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~ 305 (383)
.++.+||+.+.+...+..|.......+..+.+.. ++...++....+ .|.|-..+ ++|.--+.|+- ...-+.+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G--~I~lLhakT~eli~s~KieG----~v~~~~f 352 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNG--HIHLLHAKTKELITSFKIEG----VVSDFTF 352 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCc--eEEeehhhhhhhhheeeecc----EEeeEEE
Confidence 4799999999999999988877544432222222 233333333333 56655555 77776666653 4556777
Q ss_pred EeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEecc
Q 016752 306 SKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGV 350 (383)
Q Consensus 306 ~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~~ 350 (383)
+.+|+.|++. ...+.++.+|+++++..++..-+|.
T Consensus 353 sSdsk~l~~~----------~~~GeV~v~nl~~~~~~~rf~D~G~ 387 (514)
T KOG2055|consen 353 SSDSKELLAS----------GGTGEVYVWNLRQNSCLHRFVDDGS 387 (514)
T ss_pred ecCCcEEEEE----------cCCceEEEEecCCcceEEEEeecCc
Confidence 7888887777 4677999999999998865544554
No 36
>PF13964 Kelch_6: Kelch motif
Probab=95.43 E-value=0.039 Score=35.27 Aligned_cols=39 Identities=10% Similarity=0.277 Sum_probs=31.3
Q ss_pred cceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec
Q 016752 205 DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP 243 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~ 243 (383)
..|.++|.||.+++..........+..||+++++|+.++
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 568899999999987652233456999999999999884
No 37
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.94 E-value=2.3 Score=36.93 Aligned_cols=186 Identities=14% Similarity=0.130 Sum_probs=94.3
Q ss_pred cCeeEEEecCCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCC
Q 016752 108 CNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSN 187 (383)
Q Consensus 108 ~~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~ 187 (383)
.+|.+.+......++.+|+.|++...--..+.... .. ... + .+ +|+... ....+..++..++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~----~~--~~~-~--~~--~v~v~~-------~~~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS----GA--PVV-D--GG--RVYVGT-------SDGSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG----SG--EEE-E--TT--EEEEEE-------TTSEEEEEETTTS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc----ce--eee-c--cc--cccccc-------ceeeeEecccCCc
Confidence 57777777667789999999998764333322210 01 011 1 11 333322 1125667776665
Q ss_pred --ceEE-eccCCCeeeecCC-cceeeCceEEEEEecCCCCCCccEEEEEECCCcee--eE-ecCCCcCCc----CCeeee
Q 016752 188 --SWRR-IRVDFPYYILHGW-DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEF--QE-VPLPHLEDK----KNVLVM 256 (383)
Q Consensus 188 --~Wr~-~~~~~p~~~~~~~-~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~--~~-i~~P~~~~~----~~~~~~ 256 (383)
.|+. .. ..+....... ....-++.+|...... .|.++|+++++- .. +..|..... ... ..
T Consensus 97 ~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~-~~ 167 (238)
T PF13360_consen 97 KVLWSIYLT-SSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI-NG 167 (238)
T ss_dssp CEEEEEEE--SSCTCSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTE-EE
T ss_pred ceeeeeccc-cccccccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeeccc-cc
Confidence 6984 43 2222211222 2333356666655433 399999987654 33 233332110 000 12
Q ss_pred EEEEECCeEEEEEecCCCCcEEEEEeC-C--ceeeeEEEcCCCCceeEEEE-EEeCCCEEEEEeccCCCccccCCCcEEE
Q 016752 257 FVGNFSGCLYFSCLCNYPQPVDIWVLK-G--CWTKAFSFHRSVGDYVKALA-YSKSEDKVLVDKFKYGEEDDDINRWELY 332 (383)
Q Consensus 257 ~L~~~~G~L~~~~~~~~~~~l~iW~l~-~--~W~~~~~i~~~~~~~~~~~~-~~~~g~~v~l~~~~~~~~~~~~~~~~~~ 332 (383)
.+...+|.+++...... .+.+ -++ + .|.+. +.- +.. ...+++.|++. ..++.++
T Consensus 168 ~~~~~~~~v~~~~~~g~--~~~~-d~~tg~~~w~~~--~~~-------~~~~~~~~~~~l~~~----------~~~~~l~ 225 (238)
T PF13360_consen 168 SPVISDGRVYVSSGDGR--VVAV-DLATGEKLWSKP--ISG-------IYSLPSVDGGTLYVT----------SSDGRLY 225 (238)
T ss_dssp EEECCTTEEEEECCTSS--EEEE-ETTTTEEEEEEC--SS--------ECECEECCCTEEEEE----------ETTTEEE
T ss_pred ceEEECCEEEEEcCCCe--EEEE-ECCCCCEEEEec--CCC-------ccCCceeeCCEEEEE----------eCCCEEE
Confidence 33444675555443222 3455 555 3 36322 221 111 23457888888 3578999
Q ss_pred EEeCCCCeEE
Q 016752 333 WYDPQSQKAA 342 (383)
Q Consensus 333 ~ydl~~~~~~ 342 (383)
++|++|++..
T Consensus 226 ~~d~~tG~~~ 235 (238)
T PF13360_consen 226 ALDLKTGKVV 235 (238)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCCEE
Confidence 9999999864
No 38
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.89 E-value=2.2 Score=37.70 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=76.9
Q ss_pred cceeeCceEEEEEecCCCCCCccEEEEEECCCceee-EecCCCcCCc-------CCeeeeEEEEECCeEEEEEecCCCC-
Q 016752 205 DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQ-EVPLPHLEDK-------KNVLVMFVGNFSGCLYFSCLCNYPQ- 275 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~-------~~~~~~~L~~~~G~L~~~~~~~~~~- 275 (383)
..|..||.+|+...... .|+.||+.++... ...+|..... .+...+.+++.++-|-++-...+..
T Consensus 73 G~vVYngslYY~~~~s~------~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g 146 (250)
T PF02191_consen 73 GHVVYNGSLYYNKYNSR------NIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG 146 (250)
T ss_pred CeEEECCcEEEEecCCc------eEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence 56788999999886543 4999999999988 7778865421 1222578899888898887765432
Q ss_pred cEEEEEeC-------CceeeeEEEcC-CCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEE
Q 016752 276 PVDIWVLK-------GCWTKAFSFHR-SVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTI 347 (383)
Q Consensus 276 ~l~iW~l~-------~~W~~~~~i~~-~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~ 347 (383)
.+.|=.|+ ..|.-. +.- ..+ ..+. -. ++++.... .. .......+.||+.+++-+ .+.+
T Consensus 147 ~ivvskld~~tL~v~~tw~T~--~~k~~~~---naFm--vC-GvLY~~~s-~~----~~~~~I~yafDt~t~~~~-~~~i 212 (250)
T PF02191_consen 147 NIVVSKLDPETLSVEQTWNTS--YPKRSAG---NAFM--VC-GVLYATDS-YD----TRDTEIFYAFDTYTGKEE-DVSI 212 (250)
T ss_pred cEEEEeeCcccCceEEEEEec--cCchhhc---ceee--Ee-eEEEEEEE-CC----CCCcEEEEEEECCCCcee-ceee
Confidence 58888877 455421 111 111 1111 12 24555421 00 012445688999988888 6665
Q ss_pred e
Q 016752 348 H 348 (383)
Q Consensus 348 ~ 348 (383)
.
T Consensus 213 ~ 213 (250)
T PF02191_consen 213 P 213 (250)
T ss_pred e
Confidence 3
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.26 E-value=0.12 Score=32.34 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=32.2
Q ss_pred cceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec
Q 016752 205 DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP 243 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~ 243 (383)
..+.++|.+|.+++..........+..||+.+++|+.++
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 568899999999987653445667999999999999874
No 40
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.87 E-value=7.5 Score=38.58 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeecchhhhhhcCChHHHH
Q 016752 1 MAGLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQEFIK 42 (383)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~ 42 (383)
+..||.++...||..|+.+++.++++||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 457999999999999999999999999999999999776655
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=93.72 E-value=0.19 Score=31.85 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=31.2
Q ss_pred cceeeCceEEEEEec--CCCCCCccEEEEEECCCceeeEecC
Q 016752 205 DGTFADGHVHWLVTN--NPKDDIENLIVAFNLESEEFQEVPL 244 (383)
Q Consensus 205 ~~v~~~G~lywl~~~--~~~~~~~~~il~fD~~~e~~~~i~~ 244 (383)
..+.++|+||.+.+. ........-+..||+++.+|+.++.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 567889999999987 2223445569999999999998764
No 42
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=93.15 E-value=0.66 Score=36.49 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=49.0
Q ss_pred EEEEEECCCc--eeeEecCCCcCCcC--C-------eeeeEEEEECCeEEEEEecCC--------CCcEEEEEeC-----
Q 016752 228 LIVAFNLESE--EFQEVPLPHLEDKK--N-------VLVMFVGNFSGCLYFSCLCNY--------PQPVDIWVLK----- 283 (383)
Q Consensus 228 ~il~fD~~~e--~~~~i~~P~~~~~~--~-------~~~~~L~~~~G~L~~~~~~~~--------~~~l~iW~l~----- 283 (383)
+|+.+|+-.+ .++.|+||...... . -....+++.+|+|.++..... .-++.+|.|.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 3899998765 68889999765111 0 013567889999998876422 2369999998
Q ss_pred -CceeeeEEEcC
Q 016752 284 -GCWTKAFSFHR 294 (383)
Q Consensus 284 -~~W~~~~~i~~ 294 (383)
.+|.+.+++..
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 68999998886
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=92.51 E-value=0.33 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.536 Sum_probs=26.2
Q ss_pred EEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCC
Q 016752 162 KVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFP 197 (383)
Q Consensus 162 kVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p 197 (383)
+|+.++...........+++|+..++.|+..+ ++|
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~mp 47 (47)
T PF01344_consen 13 KIYVIGGYDGNNQPTNSVEVYDPETNTWEELP-PMP 47 (47)
T ss_dssp EEEEEEEBESTSSBEEEEEEEETTTTEEEEEE-EES
T ss_pred EEEEEeeecccCceeeeEEEEeCCCCEEEEcC-CCC
Confidence 56666655443456788999999999999987 554
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.80 E-value=2.8 Score=36.85 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=93.7
Q ss_pred cEEEEEEcCCCceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCC----ceeeEecCCCcCCcCC
Q 016752 177 TEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLES----EEFQEVPLPHLEDKKN 252 (383)
Q Consensus 177 ~~~~vyss~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~----e~~~~i~~P~~~~~~~ 252 (383)
....+|+..++++|.+. ......+....+.-||.+.-..+... ....+-.|++.+ ..|.+ .|.......
T Consensus 46 a~s~~yD~~tn~~rpl~--v~td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e--~~~~m~~~R 118 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLT--VQTDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTE--SPNDMQSGR 118 (243)
T ss_pred EEEEEEecCCCcEEecc--CCCCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceE--CcccccCCC
Confidence 34568999999999886 44444555555667888876665543 234577788765 34543 333332222
Q ss_pred eeeeEEEEE-CCeEEEEEecCCCCcEEEEEeCCceeeeEEEcC------CCCceeEEEEE-EeCCCEEEEEeccCCCccc
Q 016752 253 VLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHR------SVGDYVKALAY-SKSEDKVLVDKFKYGEEDD 324 (383)
Q Consensus 253 ~~~~~L~~~-~G~L~~~~~~~~~~~l~iW~l~~~W~~~~~i~~------~~~~~~~~~~~-~~~g~~v~l~~~~~~~~~~ 324 (383)
+ ......+ ||++.++...... ..+.|--+..-.....++. ..+....|..+ .++|+ ||+.
T Consensus 119 W-YpT~~~L~DG~vlIvGG~~~~-t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~--------- 186 (243)
T PF07250_consen 119 W-YPTATTLPDGRVLIVGGSNNP-TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIF--------- 186 (243)
T ss_pred c-cccceECCCCCEEEEeCcCCC-cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEE---------
Confidence 3 3444443 7998888876543 5666554300011111111 12233445443 46766 5665
Q ss_pred cCCCcEEEEEeCCCCeEEEEEEEeccCCCeeeEEEEEcccccccc
Q 016752 325 DINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAA 369 (383)
Q Consensus 325 ~~~~~~~~~ydl~~~~~~~~v~~~~~~~~~~~~~~y~~sl~~~~~ 369 (383)
....-..||.+++++.+.+ ...+.. .+.++...|-+-++-
T Consensus 187 --an~~s~i~d~~~n~v~~~l--P~lPg~-~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 187 --ANRGSIIYDYKTNTVVRTL--PDLPGG-PRNYPASGSSVMLPL 226 (243)
T ss_pred --EcCCcEEEeCCCCeEEeeC--CCCCCC-ceecCCCcceEEecC
Confidence 2345677899999873143 333333 567777776554443
No 45
>smart00284 OLF Olfactomedin-like domains.
Probab=91.58 E-value=9.2 Score=33.78 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=73.9
Q ss_pred cceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEe-cCCCcC-C------cCCeeeeEEEEECCeEEEEEecCC-CC
Q 016752 205 DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEV-PLPHLE-D------KKNVLVMFVGNFSGCLYFSCLCNY-PQ 275 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~-~------~~~~~~~~L~~~~G~L~~~~~~~~-~~ 275 (383)
..|+.||.+|+...... .|+.||+.+++.... .+|... . ..+...+.|++.++-|-++-..++ ..
T Consensus 78 G~VVYngslYY~~~~s~------~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 78 GVVVYNGSLYFNKFNSH------DICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred cEEEECceEEEEecCCc------cEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 56899999999765433 499999999998643 466432 1 112225789999999988876643 24
Q ss_pred cEEEEEeC-------CceeeeEEEcC-CCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEE
Q 016752 276 PVDIWVLK-------GCWTKAFSFHR-SVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTI 347 (383)
Q Consensus 276 ~l~iW~l~-------~~W~~~~~i~~-~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~ 347 (383)
.|.|-.|+ +.|.-.+ +- ..+ ..+.+ . ++++... +.. .......+.||..|++-+ .+.+
T Consensus 152 ~ivvSkLnp~tL~ve~tW~T~~--~k~sa~---naFmv--C-GvLY~~~-s~~----~~~~~I~yayDt~t~~~~-~~~i 217 (255)
T smart00284 152 KIVISKLNPATLTIENTWITTY--NKRSAS---NAFMI--C-GILYVTR-SLG----SKGEKVFYAYDTNTGKEG-HLDI 217 (255)
T ss_pred CEEEEeeCcccceEEEEEEcCC--Cccccc---ccEEE--e-eEEEEEc-cCC----CCCcEEEEEEECCCCccc-eeee
Confidence 78888887 4555311 11 111 11111 2 2455542 110 023445788999888877 5554
No 46
>PF13964 Kelch_6: Kelch motif
Probab=90.93 E-value=0.46 Score=30.16 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.7
Q ss_pred CCcEEEEcCCccceeecCCCCCC
Q 016752 118 ENGIAFWNPSTKEHLILPKFWGD 140 (383)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~ 140 (383)
.+.+.++||.|++|..+|+++..
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCCC
Confidence 35799999999999999988753
No 47
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.88 E-value=13 Score=34.53 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=80.3
Q ss_pred eeeCcCeeEEEecCCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCc----ccEE
Q 016752 104 IIDSCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVE----YTEV 179 (383)
Q Consensus 104 ~~~s~~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~----~~~~ 179 (383)
.++-.+.-++........+|+++.|+....+|....... .. +.+.. .+ ++.++......... ...+
T Consensus 71 F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~---~p--isv~V---G~--~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 71 FFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKR---CP--ISVSV---GD--KLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred EEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCc---ce--EEEEe---CC--eEEEeeccCccccccCccceeE
Confidence 333334444444444569999999999999998655321 11 11111 22 35555443221110 0044
Q ss_pred EEE--E--------cCCCceEEeccCCCeeeec-------CCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEe
Q 016752 180 SVY--S--------LRSNSWRRIRVDFPYYILH-------GWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEV 242 (383)
Q Consensus 180 ~vy--s--------s~~~~Wr~~~~~~p~~~~~-------~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i 242 (383)
|++ + ..+.+|+.++ ..|+.... .+-+|. +|.--|+..... ...-.+||+.+.+|+..
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP-~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~----~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLP-PPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR----RWGTYSFDTESHEWRKH 214 (342)
T ss_pred EEeccccccccccCCCcceEEcCC-CCCccccCCcccceEEEEEEe-cCCeEEEEecCC----ceEEEEEEcCCcceeec
Confidence 444 3 1224677766 44432221 113455 887777765532 12489999999999986
Q ss_pred ---cCCCcCC---cCCeeeeEEEEE--C--CeEEEEEec
Q 016752 243 ---PLPHLED---KKNVLVMFVGNF--S--GCLYFSCLC 271 (383)
Q Consensus 243 ---~~P~~~~---~~~~~~~~L~~~--~--G~L~~~~~~ 271 (383)
.||.... ..+. ...++.+ + |.||.+...
T Consensus 215 GdW~LPF~G~a~y~~el-~~W~Gls~~~~~~~lca~dv~ 252 (342)
T PF07893_consen 215 GDWMLPFHGQAEYVPEL-DLWFGLSSDGGGGHLCACDVS 252 (342)
T ss_pred cceecCcCCccEECCCc-CeEEEeccCCCCcEEEEEecc
Confidence 5776441 1122 3445543 3 377776554
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=89.65 E-value=12 Score=32.40 Aligned_cols=121 Identities=11% Similarity=0.076 Sum_probs=64.5
Q ss_pred eeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcC-CcCCeeeeEEEEE--CC--eEEEEEec---CCCCcEEE
Q 016752 208 FADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLE-DKKNVLVMFVGNF--SG--CLYFSCLC---NYPQPVDI 279 (383)
Q Consensus 208 ~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~-~~~~~~~~~L~~~--~G--~L~~~~~~---~~~~~l~i 279 (383)
.|||-+ .+.... .++..|+.++++..+|.|... .........++.. .+ ++..+... ......+|
T Consensus 3 sCnGLl-c~~~~~-------~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 3 PCDGLI-CFSYGK-------RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred ccceEE-EEecCC-------cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEE
Confidence 468888 333322 399999999999999866542 1111101223322 12 23222221 12237889
Q ss_pred EEeC-CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEE
Q 016752 280 WVLK-GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQ 344 (383)
Q Consensus 280 W~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~ 344 (383)
+.+. ++|.......... ..... ++.-+|..-++.....+ .....++.||+++++++ .
T Consensus 75 ys~~~~~Wr~~~~~~~~~-~~~~~-~v~~~G~lyw~~~~~~~-----~~~~~IvsFDl~~E~f~-~ 132 (230)
T TIGR01640 75 YTLGSNSWRTIECSPPHH-PLKSR-GVCINGVLYYLAYTLKT-----NPDYFIVSFDVSSERFK-E 132 (230)
T ss_pred EEeCCCCccccccCCCCc-cccCC-eEEECCEEEEEEEECCC-----CCcEEEEEEEcccceEe-e
Confidence 9998 9999876322211 11121 44446543333321000 01127999999999999 6
No 49
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.16 E-value=5.5 Score=38.31 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=81.7
Q ss_pred CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCc--eEEeccCC
Q 016752 119 NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNS--WRRIRVDF 196 (383)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~--Wr~~~~~~ 196 (383)
.++.|+|-+|+||. +|....+.+. ....++|.+|. =|++.++....- ....=+.|.+...+ |+++....
T Consensus 57 DELHvYNTatnqWf-~PavrGDiPp--gcAA~GfvcdG----trilvFGGMvEY--GkYsNdLYELQasRWeWkrlkp~~ 127 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIPP--GCAAFGFVCDG----TRILVFGGMVEY--GKYSNDLYELQASRWEWKRLKPKT 127 (830)
T ss_pred hhhhhhccccceee-cchhcCCCCC--chhhcceEecC----ceEEEEccEeee--ccccchHHHhhhhhhhHhhcCCCC
Confidence 47999999999997 5554333221 22334455553 367776643321 23445678887765 55554222
Q ss_pred Ceee--ecC---CcceeeCceEEEEEecCCC----------CCCccEEEEEECCCce--eeEe----cCCCcCCcCCeee
Q 016752 197 PYYI--LHG---WDGTFADGHVHWLVTNNPK----------DDIENLIVAFNLESEE--FQEV----PLPHLEDKKNVLV 255 (383)
Q Consensus 197 p~~~--~~~---~~~v~~~G~lywl~~~~~~----------~~~~~~il~fD~~~e~--~~~i----~~P~~~~~~~~~~ 255 (383)
|... .+. .+-+..++++|.+.+-.+. .....+++-+-..+.. |... .+|.....+.-
T Consensus 128 p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTA-- 205 (830)
T KOG4152|consen 128 PKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTA-- 205 (830)
T ss_pred CCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccccee--
Confidence 2211 111 1335567899988763321 1223345555444543 4321 34444432221
Q ss_pred eEEEEECC---eEEEEEecCCCCcEEEEEeC---CceeeeE
Q 016752 256 MFVGNFSG---CLYFSCLCNYPQPVDIWVLK---GCWTKAF 290 (383)
Q Consensus 256 ~~L~~~~G---~L~~~~~~~~~~~l~iW~l~---~~W~~~~ 290 (383)
..-.+.|. ++++...-.+.+-=++|.|+ -.|.|-.
T Consensus 206 ViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 206 VIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred EEEEeccCCcceEEEEcccccccccceeEEecceeeccccc
Confidence 11223332 33333333333234799999 7898764
No 50
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.58 E-value=19 Score=33.46 Aligned_cols=117 Identities=10% Similarity=0.141 Sum_probs=70.0
Q ss_pred CceEEEEEecCCCCCCccEEEEEECCCce--ee---EecCCCcCCcCCeeeeEEEEE-CCeEEEEEecCCCCcEEEEEeC
Q 016752 210 DGHVHWLVTNNPKDDIENLIVAFNLESEE--FQ---EVPLPHLEDKKNVLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLK 283 (383)
Q Consensus 210 ~G~lywl~~~~~~~~~~~~il~fD~~~e~--~~---~i~~P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~l~iW~l~ 283 (383)
+|..-|...-+. ..|..|++..+. .. .+.+|.... ...++.. +|+..++..... .++.++.++
T Consensus 154 dg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~G-----PRh~~f~pdg~~~Yv~~e~s-~~v~v~~~~ 222 (345)
T PF10282_consen 154 DGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPPGSG-----PRHLAFSPDGKYAYVVNELS-NTVSVFDYD 222 (345)
T ss_dssp TSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECSTTSS-----EEEEEE-TTSSEEEEEETTT-TEEEEEEEE
T ss_pred CCCEEEEEecCC-----CEEEEEEEeCCCceEEEeeccccccCCC-----CcEEEEcCCcCEEEEecCCC-CcEEEEeec
Confidence 565555554432 358888887665 43 345666542 2234443 555444443322 278888887
Q ss_pred ---CceeeeEEEcCC---CC--ceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeC--CCCeEEEEEEE
Q 016752 284 ---GCWTKAFSFHRS---VG--DYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDP--QSQKAADQVTI 347 (383)
Q Consensus 284 ---~~W~~~~~i~~~---~~--~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl--~~~~~~~~v~~ 347 (383)
+.+....+++.. .. ....-+.+++||+.||+.. .....|..|++ ++++++ .++.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn---------r~~~sI~vf~~d~~~g~l~-~~~~ 286 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN---------RGSNSISVFDLDPATGTLT-LVQT 286 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE---------CTTTEEEEEEECTTTTTEE-EEEE
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe---------ccCCEEEEEEEecCCCceE-EEEE
Confidence 677777777752 11 2466677888999999983 35667888887 567887 6643
No 51
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=86.98 E-value=20 Score=31.31 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=106.4
Q ss_pred eeeCcCeeEEEec-CCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEE
Q 016752 104 IIDSCNGLIALKN-DENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVY 182 (383)
Q Consensus 104 ~~~s~~GLll~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vy 182 (383)
..+..+|-|.+.. ...+++.++|.+++...+..+. ..++.++...+ +++... .....++
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----------~~G~~~~~~~g--~l~v~~--------~~~~~~~ 65 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----------PNGMAFDRPDG--RLYVAD--------SGGIAVV 65 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----------EEEEEEECTTS--EEEEEE--------TTCEEEE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----------CceEEEEccCC--EEEEEE--------cCceEEE
Confidence 4454455554444 5678999999999987655443 22455563223 333332 2334666
Q ss_pred EcCCCceEEeccCCCe---eeecCC-cceeeCceEEEEEecCCCCCCc--cEEEEEECCCceeeEe----cCCCcCCcCC
Q 016752 183 SLRSNSWRRIRVDFPY---YILHGW-DGTFADGHVHWLVTNNPKDDIE--NLIVAFNLESEEFQEV----PLPHLEDKKN 252 (383)
Q Consensus 183 ss~~~~Wr~~~~~~p~---~~~~~~-~~v~~~G~lywl~~~~~~~~~~--~~il~fD~~~e~~~~i----~~P~~~~~~~ 252 (383)
+..++.++.+. ..+. .....+ -.+--+|.+|+-.......... ..+..+|.. .+...+ ..|.
T Consensus 66 d~~~g~~~~~~-~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN------ 137 (246)
T PF08450_consen 66 DPDTGKVTVLA-DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN------ 137 (246)
T ss_dssp ETTTTEEEEEE-EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE------
T ss_pred ecCCCcEEEEe-eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc------
Confidence 88899888766 3211 111111 2234488877766544322222 469999999 554433 2222
Q ss_pred eeeeEEEEE-CCe-EEEEEecCCCCcEEEEEeC-----CceeeeEEE-cCCCC-ceeEEEEEEeCCCEEEEEeccCCCcc
Q 016752 253 VLVMFVGNF-SGC-LYFSCLCNYPQPVDIWVLK-----GCWTKAFSF-HRSVG-DYVKALAYSKSEDKVLVDKFKYGEED 323 (383)
Q Consensus 253 ~~~~~L~~~-~G~-L~~~~~~~~~~~l~iW~l~-----~~W~~~~~i-~~~~~-~~~~~~~~~~~g~~v~l~~~~~~~~~ 323 (383)
-++.. +|+ |++...... .||.++ ..+.....+ ...-. ....=+++..+| .|++..
T Consensus 138 ----Gi~~s~dg~~lyv~ds~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~------- 201 (246)
T PF08450_consen 138 ----GIAFSPDGKTLYVADSFNG----RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVAD------- 201 (246)
T ss_dssp ----EEEEETTSSEEEEEETTTT----EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEE-------
T ss_pred ----ceEECCcchheeecccccc----eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEE-------
Confidence 13333 454 555544333 366665 335544444 22111 234445565665 578774
Q ss_pred ccCCCcEEEEEeCCCCeEEEEEEEe
Q 016752 324 DDINRWELYWYDPQSQKAADQVTIH 348 (383)
Q Consensus 324 ~~~~~~~~~~ydl~~~~~~~~v~~~ 348 (383)
....++..||++.+.+. .+.+.
T Consensus 202 --~~~~~I~~~~p~G~~~~-~i~~p 223 (246)
T PF08450_consen 202 --WGGGRIVVFDPDGKLLR-EIELP 223 (246)
T ss_dssp --ETTTEEEEEETTSCEEE-EEE-S
T ss_pred --cCCCEEEEECCCccEEE-EEcCC
Confidence 46789999999977777 77665
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=86.56 E-value=1.5 Score=27.47 Aligned_cols=35 Identities=11% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCC
Q 016752 162 KVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFP 197 (383)
Q Consensus 162 kVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p 197 (383)
+++.++...........+.+|+..+++|+.++ ++|
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~-~~P 48 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP-SMP 48 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETTTTEEEE---SS-
T ss_pred eEEEECCCCCCCcccCCEEEEECCCCEEEECC-CCC
Confidence 45555544333334567899999999999986 665
No 53
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=85.97 E-value=1 Score=28.35 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=21.9
Q ss_pred ceee-CceEEEEEecCCCCCCccEEEEEECCCceeeEec
Q 016752 206 GTFA-DGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP 243 (383)
Q Consensus 206 ~v~~-~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~ 243 (383)
++.+ ++.+|.+++.........-+..||+++++|+.++
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 4555 5788888765432112234889999999999883
No 54
>smart00612 Kelch Kelch domain.
Probab=84.73 E-value=1.4 Score=26.95 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=18.0
Q ss_pred ccEEEEEEcCCCceEEeccCCCe
Q 016752 176 YTEVSVYSLRSNSWRRIRVDFPY 198 (383)
Q Consensus 176 ~~~~~vyss~~~~Wr~~~~~~p~ 198 (383)
...+++|+.+++.|+..+ ++|.
T Consensus 14 ~~~v~~yd~~~~~W~~~~-~~~~ 35 (47)
T smart00612 14 LKSVEVYDPETNKWTPLP-SMPT 35 (47)
T ss_pred eeeEEEECCCCCeEccCC-CCCC
Confidence 467899999999999887 6654
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.56 E-value=0.33 Score=45.27 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=34.4
Q ss_pred CCcHHHHHHHHccCCcccceeeeecchhhhhhcCChH
Q 016752 3 GLPTDINIDILSRLSIKCLLRFKCASKSFCSLIDSQE 39 (383)
Q Consensus 3 ~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~ 39 (383)
.||.+++..||+-|..+++.|++.+||.|+-+..|..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 4999999999999999999999999999999877755
No 56
>PLN02772 guanylate kinase
Probab=81.57 E-value=8.7 Score=36.28 Aligned_cols=74 Identities=9% Similarity=0.011 Sum_probs=50.9
Q ss_pred cceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEec----CCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEEE
Q 016752 205 DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP----LPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIW 280 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~----~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW 280 (383)
++|.++.++|.+++..+.......+..||..+.+|..-. .|..+..++ ....-+++|.++.-.... .=+||
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhS----a~v~~~~rilv~~~~~~~-~~~~w 103 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYS----AVVLNKDRILVIKKGSAP-DDSIW 103 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcce----EEEECCceEEEEeCCCCC-ccceE
Confidence 678999999999976543213456999999999998742 333333222 234447889888765443 47899
Q ss_pred EeC
Q 016752 281 VLK 283 (383)
Q Consensus 281 ~l~ 283 (383)
.|+
T Consensus 104 ~l~ 106 (398)
T PLN02772 104 FLE 106 (398)
T ss_pred EEE
Confidence 998
No 57
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=80.45 E-value=26 Score=32.40 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=69.4
Q ss_pred cceee--CceEEEEEecCCCCCCccEEEEEECCCceeeEec---CCCcC-CcC-----CeeeeEEEEECCeEEEEEecCC
Q 016752 205 DGTFA--DGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP---LPHLE-DKK-----NVLVMFVGNFSGCLYFSCLCNY 273 (383)
Q Consensus 205 ~~v~~--~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~---~P~~~-~~~-----~~~~~~L~~~~G~L~~~~~~~~ 273 (383)
.+++. +|.+||++.++. |...|++.+.-...+ +-... ... ++..+.+-.-.|+|+++-....
T Consensus 188 ~~~~~~~~~~~~F~Sy~G~-------v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEGN-------VYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp --EEETTTTEEEEEBTTSE-------EEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred ccceECCCCeEEEEecCCE-------EEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 44444 357888877765 999999888644332 21111 111 2201111123578887643211
Q ss_pred -----CCcEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEE
Q 016752 274 -----PQPVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVT 346 (383)
Q Consensus 274 -----~~~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~ 346 (383)
...=+||+++ ..=.++.+|++. .....++++++.+=+++... ..+..++.||..|++...+++
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~--------~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALS--------AGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEE--------TTTTEEEEEETTT--EEEEE-
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEc--------CCCCeEEEEeCcCCcEEeehh
Confidence 1267999999 555677777752 23446788887664454310 346789999999998884443
No 58
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=80.13 E-value=2.8 Score=26.35 Aligned_cols=32 Identities=16% Similarity=0.422 Sum_probs=22.6
Q ss_pred EEEEEEEE--eecCCcccEEEEEEcCCCceEEec
Q 016752 162 KVFRLVQF--VRENVEYTEVSVYSLRSNSWRRIR 193 (383)
Q Consensus 162 kVv~~~~~--~~~~~~~~~~~vyss~~~~Wr~~~ 193 (383)
|++.+... .........+++|+.+++.|+.++
T Consensus 13 kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 13 KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 55555544 122335678999999999999886
No 59
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.08 E-value=4.9 Score=36.86 Aligned_cols=193 Identities=15% Similarity=0.110 Sum_probs=107.7
Q ss_pred cEEEEEEcCCCceEEeccCCCeeeecCCcceeeCc-eEEEEEecCC---------------------------------C
Q 016752 177 TEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADG-HVHWLVTNNP---------------------------------K 222 (383)
Q Consensus 177 ~~~~vyss~~~~Wr~~~~~~p~~~~~~~~~v~~~G-~lywl~~~~~---------------------------------~ 222 (383)
..+..|++.+|+|..+++..|..+ ....++..++ .+|+..+-.. .
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl-~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d 191 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGL-VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED 191 (381)
T ss_pred eeeEEecCCCChhheecccccccc-ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH
Confidence 356789999999999986666653 3334444455 7777765321 0
Q ss_pred CCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEEEECCeEEEEEec--CCCCcEEEEEeC-----CceeeeEEEcC
Q 016752 223 DDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVGNFSGCLYFSCLC--NYPQPVDIWVLK-----GCWTKAFSFHR 294 (383)
Q Consensus 223 ~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~--~~~~~l~iW~l~-----~~W~~~~~i~~ 294 (383)
...-..+++||+.+++|+..- .|....... ..+..+++|.+|... ..-++-.+|+.+ ..|.+.-.++.
T Consensus 192 y~~n~ev~sy~p~~n~W~~~G~~pf~~~aGs----a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 192 YFFNKEVLSYDPSTNQWRNLGENPFYGNAGS----AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred hcccccccccccccchhhhcCcCcccCccCc----ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 112235999999999999874 665432111 234456778888764 222355666655 78998877765
Q ss_pred CCC-ceeEEEEE-E-eCCCEEEEEe--ccCCCc-------------cccCCCcEEEEEeCCCCeEEEEEEE-eccCCCee
Q 016752 295 SVG-DYVKALAY-S-KSEDKVLVDK--FKYGEE-------------DDDINRWELYWYDPQSQKAADQVTI-HGVPQGCR 355 (383)
Q Consensus 295 ~~~-~~~~~~~~-~-~~g~~v~l~~--~~~~~~-------------~~~~~~~~~~~ydl~~~~~~~~v~~-~~~~~~~~ 355 (383)
..+ ....+.|- + ...+.+++.- +..+.. ........++.+| ++.|+ .+.- .....+ -
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk-~~GeLp~~l~Y-G 343 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWK-IVGELPQGLAY-G 343 (381)
T ss_pred CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCcee-eecccCCCccc-e
Confidence 322 11222211 1 1112333330 110000 0001234677887 88898 6532 221222 3
Q ss_pred eEEEEEccccccccCCCCccccc
Q 016752 356 DTLVCVDSLVSLAAYAGRGVAGR 378 (383)
Q Consensus 356 ~~~~y~~sl~~~~~~~~~~~~~~ 378 (383)
-...|-+.++.|.+....|.+.+
T Consensus 344 ~s~~~nn~vl~IGGE~~~Gka~~ 366 (381)
T COG3055 344 VSLSYNNKVLLIGGETSGGKATT 366 (381)
T ss_pred EEEecCCcEEEEccccCCCeeee
Confidence 46678888888888776665543
No 60
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=79.03 E-value=55 Score=30.41 Aligned_cols=168 Identities=14% Similarity=0.195 Sum_probs=87.6
Q ss_pred EEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCc--eEEec-cCCCeeeecCCcceee--Cc-eEEEEEecCCCC
Q 016752 150 DGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNS--WRRIR-VDFPYYILHGWDGTFA--DG-HVHWLVTNNPKD 223 (383)
Q Consensus 150 ~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~--Wr~~~-~~~p~~~~~~~~~v~~--~G-~lywl~~~~~~~ 223 (383)
..+.++|. ++|-++.-. ....+.+|+...+. ..... ...|.. ...+.+.+ +| .+|.+.....
T Consensus 147 H~v~~~pd-g~~v~v~dl-------G~D~v~~~~~~~~~~~l~~~~~~~~~~G--~GPRh~~f~pdg~~~Yv~~e~s~-- 214 (345)
T PF10282_consen 147 HQVVFSPD-GRFVYVPDL-------GADRVYVYDIDDDTGKLTPVDSIKVPPG--SGPRHLAFSPDGKYAYVVNELSN-- 214 (345)
T ss_dssp EEEEE-TT-SSEEEEEET-------TTTEEEEEEE-TTS-TEEEEEEEECSTT--SSEEEEEE-TTSSEEEEEETTTT--
T ss_pred eeEEECCC-CCEEEEEec-------CCCEEEEEEEeCCCceEEEeeccccccC--CCCcEEEEcCCcCEEEEecCCCC--
Confidence 34566664 334433321 35678888887755 54422 011110 00022222 55 4555543332
Q ss_pred CCccEEEEEECC--CceeeEec----CCCcCCcCCeeeeEEEEE-CCeEEEEEecCCCCcEEEEEeC---CceeeeEEEc
Q 016752 224 DIENLIVAFNLE--SEEFQEVP----LPHLEDKKNVLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLK---GCWTKAFSFH 293 (383)
Q Consensus 224 ~~~~~il~fD~~--~e~~~~i~----~P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~l~iW~l~---~~W~~~~~i~ 293 (383)
.|.+|++. +..+..+. +|........ ...+... +|+..++..... ..+.++.++ +.-.++..++
T Consensus 215 ----~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~i~ispdg~~lyvsnr~~-~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 215 ----TVSVFDYDPSDGSLTEIQTISTLPEGFTGENA-PAEIAISPDGRFLYVSNRGS-NSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp ----EEEEEEEETTTTEEEEEEEEESCETTSCSSSS-EEEEEE-TTSSEEEEEECTT-TEEEEEEECTTTTTEEEEEEEE
T ss_pred ----cEEEEeecccCCceeEEEEeeeccccccccCC-ceeEEEecCCCEEEEEeccC-CEEEEEEEecCCCceEEEEEEe
Confidence 36666665 66666542 4443322211 2234444 576555544333 389999995 5566655555
Q ss_pred CCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEE--eCCCCeEEEEEE
Q 016752 294 RSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWY--DPQSQKAADQVT 346 (383)
Q Consensus 294 ~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~y--dl~~~~~~~~v~ 346 (383)
. -+...+-+.+.++|+.|++.. .....+..| |.++++++ .+.
T Consensus 289 ~-~G~~Pr~~~~s~~g~~l~Va~---------~~s~~v~vf~~d~~tG~l~-~~~ 332 (345)
T PF10282_consen 289 T-GGKFPRHFAFSPDGRYLYVAN---------QDSNTVSVFDIDPDTGKLT-PVG 332 (345)
T ss_dssp E-SSSSEEEEEE-TTSSEEEEEE---------TTTTEEEEEEEETTTTEEE-EEE
T ss_pred C-CCCCccEEEEeCCCCEEEEEe---------cCCCeEEEEEEeCCCCcEE-Eec
Confidence 4 134467778888999888873 244455555 67899999 654
No 61
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=75.95 E-value=34 Score=30.57 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=68.4
Q ss_pred CcCeeEEEec-CCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcC
Q 016752 107 SCNGLIALKN-DENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLR 185 (383)
Q Consensus 107 s~~GLll~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 185 (383)
.-+|-|-+.. ..+.+.-.||.++.--++|.+.....+ .. .+..|+... +.+.. -....+.-|+..
T Consensus 197 tpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g---sR--riwsdpig~----~witt-----wg~g~l~rfdPs 262 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG---SR--RIWSDPIGR----AWITT-----WGTGSLHRFDPS 262 (353)
T ss_pred CCCCcEEEEeccccceEEcccccCCcceecCCCccccc---cc--ccccCccCc----EEEec-----cCCceeeEeCcc
Confidence 3344444332 234566779999987788877653221 11 133444321 12211 134567788888
Q ss_pred CCceEEeccCCCeeeecCCcceeeCc-eEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcC
Q 016752 186 SNSWRRIRVDFPYYILHGWDGTFADG-HVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLE 248 (383)
Q Consensus 186 ~~~Wr~~~~~~p~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 248 (383)
+.+|++-. +|-..... ..+++|. -.-|+..-.. ..|..||+++++|.++++|...
T Consensus 263 ~~sW~eyp--LPgs~arp-ys~rVD~~grVW~sea~a-----gai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 263 VTSWIEYP--LPGSKARP-YSMRVDRHGRVWLSEADA-----GAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred cccceeee--CCCCCCCc-ceeeeccCCcEEeecccc-----CceeecCcccceEEEecCCCCC
Confidence 88998765 44322111 3344443 3446644332 3599999999999999988654
No 62
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=75.83 E-value=6.6 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=22.8
Q ss_pred ceEEEEEecC-CCCCCccEEEEEECCCceeeEec-CCCc
Q 016752 211 GHVHWLVTNN-PKDDIENLIVAFNLESEEFQEVP-LPHL 247 (383)
Q Consensus 211 G~lywl~~~~-~~~~~~~~il~fD~~~e~~~~i~-~P~~ 247 (383)
+.+|...+.. .+.....-+.+||+.+.+|+.+. +|..
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCC
Confidence 4566655544 11122233899999999999883 4443
No 63
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=74.56 E-value=67 Score=32.83 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=52.8
Q ss_pred cceeeCceEEEEEecCCC-----CCCccEEEEEECCCceeeEecCCCcCCcC----CeeeeEEEEE---CCeEEEEEecC
Q 016752 205 DGTFADGHVHWLVTNNPK-----DDIENLIVAFNLESEEFQEVPLPHLEDKK----NVLVMFVGNF---SGCLYFSCLCN 272 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~-----~~~~~~il~fD~~~e~~~~i~~P~~~~~~----~~~~~~L~~~---~G~L~~~~~~~ 272 (383)
..++..++-||+..+... .+....+++-+.+++.|....+|....-+ +-..+.-+.. ++-|.+-+..-
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~kl 329 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKL 329 (893)
T ss_pred ceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCcc
Confidence 457788888888755321 23445699999999999999999754111 0002222222 33455555433
Q ss_pred CCCcEEEEEeC-CceeeeEE
Q 016752 273 YPQPVDIWVLK-GCWTKAFS 291 (383)
Q Consensus 273 ~~~~l~iW~l~-~~W~~~~~ 291 (383)
+ .|-||..+ ++.+.+..
T Consensus 330 g--QLlVweWqsEsYVlKQQ 347 (893)
T KOG0291|consen 330 G--QLLVWEWQSESYVLKQQ 347 (893)
T ss_pred c--eEEEEEeeccceeeecc
Confidence 3 89999998 77776654
No 64
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=74.32 E-value=80 Score=29.89 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=56.5
Q ss_pred CcceeeCceEEEEEecCCCCCCccEEEEEECCCce--eeEecCCCcC---CcCCeeeeEEEEECCeEEEEEecCCCCcEE
Q 016752 204 WDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEE--FQEVPLPHLE---DKKNVLVMFVGNFSGCLYFSCLCNYPQPVD 278 (383)
Q Consensus 204 ~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~---~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~ 278 (383)
..++..+|.+|.....+ .+.++|+.+.+ |+. ++.... ...+ .+.++..+|.|+.+..... -.
T Consensus 250 ~sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~~~~~~~~~--~vy~~~~~g~l~ald~~tG---~~ 316 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-------NLVALDLRSGQIVWKR-EYGSVNDFAVDGG--RIYLVDQNDRVYALDTRGG---VE 316 (394)
T ss_pred CCcEEECCEEEEEEcCC-------eEEEEECCCCCEEEee-cCCCccCcEEECC--EEEEEcCCCeEEEEECCCC---cE
Confidence 36788899999876554 39999998754 653 221110 0001 1223333444444433222 12
Q ss_pred EEEeCCceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEE
Q 016752 279 IWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTI 347 (383)
Q Consensus 279 iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~ 347 (383)
+|..+ . +.. .....|+.. ++.|++. ..++.++++|.+++++.-+.++
T Consensus 317 ~W~~~------~-~~~--~~~~sp~v~---~g~l~v~----------~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 317 LWSQS------D-LLH--RLLTAPVLY---NGYLVVG----------DSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred EEccc------c-cCC--CcccCCEEE---CCEEEEE----------eCCCEEEEEECCCCCEEEEEEc
Confidence 44332 1 000 011123322 4678887 3677899999999887634444
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=73.99 E-value=78 Score=29.64 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=57.8
Q ss_pred cceeeCceEEEEEecCCCCCCccEEEEEECCCce--eeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEe
Q 016752 205 DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEE--FQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVL 282 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l 282 (383)
.++..+|.+|.....+ .+.++|..+.+ |.. +.+.. ...+..+|.+++... .. .+..+..
T Consensus 236 ~p~~~~~~vy~~~~~g-------~l~a~d~~tG~~~W~~-~~~~~--------~~p~~~~~~vyv~~~-~G--~l~~~d~ 296 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQG-------RVAALDLRSGRVLWKR-DASSY--------QGPAVDDNRLYVTDA-DG--VVVALDR 296 (377)
T ss_pred ccEEECCEEEEEEcCC-------EEEEEECCCCcEEEee-ccCCc--------cCceEeCCEEEEECC-CC--eEEEEEC
Confidence 5677899999876554 39999997654 433 22111 112334455544331 11 2333333
Q ss_pred C---CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEec
Q 016752 283 K---GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHG 349 (383)
Q Consensus 283 ~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~ 349 (383)
+ ..|.... +.. .....|+. .|+.|++. ..++.++++|.+++++.-++.+.+
T Consensus 297 ~tG~~~W~~~~-~~~--~~~ssp~i---~g~~l~~~----------~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 297 RSGSELWKNDE-LKY--RQLTAPAV---VGGYLVVG----------DFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred CCCcEEEcccc-ccC--CccccCEE---ECCEEEEE----------eCCCEEEEEECCCCCEEEEEEcCC
Confidence 2 2344311 111 01122322 24678887 367789999999888774544444
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=73.62 E-value=61 Score=28.22 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=79.2
Q ss_pred EEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCeeeecCCccee-eCceEEEEEecCCCCCCccEE
Q 016752 151 GFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTF-ADGHVHWLVTNNPKDDIENLI 229 (383)
Q Consensus 151 ~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~i 229 (383)
+..+|+..+.+-++-+ ....+..++..++.-+.....-|... .+. -+|.+|...... +
T Consensus 4 gp~~d~~~g~l~~~D~--------~~~~i~~~~~~~~~~~~~~~~~~~G~-----~~~~~~g~l~v~~~~~--------~ 62 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDI--------PGGRIYRVDPDTGEVEVIDLPGPNGM-----AFDRPDGRLYVADSGG--------I 62 (246)
T ss_dssp EEEEETTTTEEEEEET--------TTTEEEEEETTTTEEEEEESSSEEEE-----EEECTTSEEEEEETTC--------E
T ss_pred ceEEECCCCEEEEEEc--------CCCEEEEEECCCCeEEEEecCCCceE-----EEEccCCEEEEEEcCc--------e
Confidence 4566665554333321 24456667777766554441112111 111 257877765332 6
Q ss_pred EEEECCCceeeEec-CCCcCCcCCeeeeEEEE-ECCeEEEEEecCCCC--c--EEEEEeCCceeeeEEEcCCCCceeEEE
Q 016752 230 VAFNLESEEFQEVP-LPHLEDKKNVLVMFVGN-FSGCLYFSCLCNYPQ--P--VDIWVLKGCWTKAFSFHRSVGDYVKAL 303 (383)
Q Consensus 230 l~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~--~--l~iW~l~~~W~~~~~i~~~~~~~~~~~ 303 (383)
..+|+.+.+++.+. .+........ .-.+++ -+|+|++........ . =.||.++.. .+...+.-.+ ....-+
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~-~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~~pNGi 139 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNR-PNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-GFPNGI 139 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEE-EEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-SSEEEE
T ss_pred EEEecCCCcEEEEeeccCCCcccCC-CceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-ccccce
Confidence 77799999888763 3221101111 112333 368888887653311 1 468888822 1121121101 112335
Q ss_pred EEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCC
Q 016752 304 AYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQS 338 (383)
Q Consensus 304 ~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~ 338 (383)
++.++|+.+|+.. .....++.|++..
T Consensus 140 ~~s~dg~~lyv~d---------s~~~~i~~~~~~~ 165 (246)
T PF08450_consen 140 AFSPDGKTLYVAD---------SFNGRIWRFDLDA 165 (246)
T ss_dssp EEETTSSEEEEEE---------TTTTEEEEEEEET
T ss_pred EECCcchheeecc---------cccceeEEEeccc
Confidence 5567888888874 4667898888853
No 67
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=73.44 E-value=84 Score=29.75 Aligned_cols=183 Identities=13% Similarity=0.092 Sum_probs=89.6
Q ss_pred CeeEEEecCCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCC-
Q 016752 109 NGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSN- 187 (383)
Q Consensus 109 ~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~- 187 (383)
+|.|.+......++-.|+.|++.+.--..+.. ..... ... ++ +|+... ....+.-++..++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~ssP-~v~----~~-~v~v~~-------~~g~l~ald~~tG~ 181 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-----ALSRP-VVS----DG-LVLVHT-------SNGMLQALNESDGA 181 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-----eecCC-EEE----CC-EEEEEC-------CCCEEEEEEccCCC
Confidence 56666655556688889988875432111111 00000 001 11 233221 1235667777776
Q ss_pred -ceEEeccCCCe-eeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCce--eeE-ecCCCcCCcC-Ce--eeeEEE
Q 016752 188 -SWRRIRVDFPY-YILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEE--FQE-VPLPHLEDKK-NV--LVMFVG 259 (383)
Q Consensus 188 -~Wr~~~~~~p~-~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~--~~~-i~~P~~~~~~-~~--~~~~L~ 259 (383)
.|+... ..|. .......++..+|.+|+...++ .+.++|..+.+ |+. +..|...... .. ....-+
T Consensus 182 ~~W~~~~-~~~~~~~~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 182 VKWTVNL-DVPSLTLRGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred EeeeecC-CCCcccccCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 587654 3222 1111236777888888865443 39999998764 543 2233221100 00 001123
Q ss_pred EECCeEEEEEecCCCCcEEEEEeC-----CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEE
Q 016752 260 NFSGCLYFSCLCNYPQPVDIWVLK-----GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWY 334 (383)
Q Consensus 260 ~~~G~L~~~~~~~~~~~l~iW~l~-----~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~y 334 (383)
..+|.|++.... . .++.++ ..|.+.. .. ...+. + .++.||+. ..++.++.+
T Consensus 254 v~~~~vy~~~~~-g----~l~ald~~tG~~~W~~~~--~~----~~~~~-~--~~~~vy~~----------~~~g~l~al 309 (394)
T PRK11138 254 VVGGVVYALAYN-G----NLVALDLRSGQIVWKREY--GS----VNDFA-V--DGGRIYLV----------DQNDRVYAL 309 (394)
T ss_pred EECCEEEEEEcC-C----eEEEEECCCCCEEEeecC--CC----ccCcE-E--ECCEEEEE----------cCCCeEEEE
Confidence 346666655431 1 223332 3455321 11 11122 2 35678887 367789999
Q ss_pred eCCCCeE
Q 016752 335 DPQSQKA 341 (383)
Q Consensus 335 dl~~~~~ 341 (383)
|.++++.
T Consensus 310 d~~tG~~ 316 (394)
T PRK11138 310 DTRGGVE 316 (394)
T ss_pred ECCCCcE
Confidence 9988763
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=73.07 E-value=46 Score=30.01 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=48.7
Q ss_pred CeEEEEEecCCCCcEEEEEeC--CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCe
Q 016752 263 GCLYFSCLCNYPQPVDIWVLK--GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQK 340 (383)
Q Consensus 263 G~L~~~~~~~~~~~l~iW~l~--~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~ 340 (383)
+-|..+.+... ++++|.++ +.-+-+-... .+....-++..++|..||.. ..++.+-.||+.+++
T Consensus 40 ~~~~~A~SWD~--tVR~wevq~~g~~~~ka~~~--~~~PvL~v~WsddgskVf~g----------~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 40 DNLLAAGSWDG--TVRIWEVQNSGQLVPKAQQS--HDGPVLDVCWSDDGSKVFSG----------GCDKQAKLWDLASGQ 105 (347)
T ss_pred CceEEecccCC--ceEEEEEecCCcccchhhhc--cCCCeEEEEEccCCceEEee----------ccCCceEEEEccCCC
Confidence 33444555555 89999998 3322221111 22233345556788899998 478899999999999
Q ss_pred EEEEEEEeccC
Q 016752 341 AADQVTIHGVP 351 (383)
Q Consensus 341 ~~~~v~~~~~~ 351 (383)
.. .|..+..+
T Consensus 106 ~~-~v~~Hd~p 115 (347)
T KOG0647|consen 106 VS-QVAAHDAP 115 (347)
T ss_pred ee-eeeecccc
Confidence 99 88877654
No 69
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=72.74 E-value=84 Score=29.43 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=66.5
Q ss_pred cEEEEEEcCCC--ceEEeccCCC-eeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCce--eeE-ecCCCcCCc
Q 016752 177 TEVSVYSLRSN--SWRRIRVDFP-YYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEE--FQE-VPLPHLEDK 250 (383)
Q Consensus 177 ~~~~vyss~~~--~Wr~~~~~~p-~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~--~~~-i~~P~~~~~ 250 (383)
..+..++..++ .|+... ..+ ........++..+|.+|.-...+ .+.++|+.+++ |+. +..|.....
T Consensus 155 g~l~a~d~~tG~~~W~~~~-~~~~~~~~~~~sp~~~~~~v~~~~~~g-------~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSR-VTPALTLRGSASPVIADGGVLVGFAGG-------KLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred CeEEEEEcCCCceeeEEcc-CCCceeecCCCCCEEECCEEEEECCCC-------EEEEEEccCCCEeeeeccccCCCCCc
Confidence 34667777665 587544 222 11112235677888877644333 49999997754 543 222321100
Q ss_pred C----CeeeeEEEEECCeEEEEEecCCCCcEEEEEeC---CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCcc
Q 016752 251 K----NVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLK---GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEED 323 (383)
Q Consensus 251 ~----~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~ 323 (383)
. .. .......+|.+++... .. .+..+..+ ..|... .. ....|. + .++.||+.
T Consensus 227 ~~~~~~~-~~~p~~~~~~vy~~~~-~g--~l~a~d~~tG~~~W~~~--~~----~~~~p~-~--~~~~vyv~-------- 285 (377)
T TIGR03300 227 LERLVDV-DGDPVVDGGQVYAVSY-QG--RVAALDLRSGRVLWKRD--AS----SYQGPA-V--DDNRLYVT-------- 285 (377)
T ss_pred hhhhhcc-CCccEEECCEEEEEEc-CC--EEEEEECCCCcEEEeec--cC----CccCce-E--eCCEEEEE--------
Confidence 0 00 0112234555555432 12 34444443 345432 11 111122 2 34678877
Q ss_pred ccCCCcEEEEEeCCCCeEE
Q 016752 324 DDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 324 ~~~~~~~~~~ydl~~~~~~ 342 (383)
..++.++++|..+++..
T Consensus 286 --~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 286 --DADGVVVALDRRSGSEL 302 (377)
T ss_pred --CCCCeEEEEECCCCcEE
Confidence 36678999999877643
No 70
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=72.13 E-value=42 Score=29.35 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=39.2
Q ss_pred eEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEeccCCCeeeEEEEEccccccccCCCCccc
Q 016752 300 VKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVDSLVSLAAYAGRGVA 376 (383)
Q Consensus 300 ~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~~~~~~~~~~~y~~sl~~~~~~~~~~~~ 376 (383)
+..+-+.+..+.|++. ..+..++.+|+++++++ +. ..|...+ .++.+-+++=-.+-+.++.|-+
T Consensus 117 INam~ldP~enSi~~A----------gGD~~~y~~dlE~G~i~-r~-~rGHtDY-vH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 117 INAMWLDPSENSILFA----------GGDGVIYQVDLEDGRIQ-RE-YRGHTDY-VHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred cceeEeccCCCcEEEe----------cCCeEEEEEEecCCEEE-EE-EcCCcce-eeeeeecccCcceeecCCCccE
Confidence 4445555556678888 47889999999999999 64 5665544 3444333333334444434433
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.09 E-value=71 Score=27.89 Aligned_cols=184 Identities=14% Similarity=0.182 Sum_probs=93.5
Q ss_pred CeeEEEec-CCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCC
Q 016752 109 NGLIALKN-DENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSN 187 (383)
Q Consensus 109 ~GLll~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~ 187 (383)
+|=-|+.. .++.+-+|||..+....-=..... ....+...+|.+ |+-.- + ....+.+++..++
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~-----EVlD~~~s~Dns----kf~s~-----G--gDk~v~vwDV~TG 91 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-----EVLDAALSSDNS----KFASC-----G--GDKAVQVWDVNTG 91 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCCc-----eeeecccccccc----ccccC-----C--CCceEEEEEcccC
Confidence 55555554 456899999988775432221111 122233344421 21111 1 2345678888876
Q ss_pred ----ceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECC
Q 016752 188 ----SWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSG 263 (383)
Q Consensus 188 ----~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G 263 (383)
.||-.......--.-....|.+.|.+- ..+-++|-.+..+..|+.-....+ +. .-....+
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD------------~s~r~wDCRS~s~ePiQildea~D-~V---~Si~v~~ 155 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFD------------SSVRLWDCRSRSFEPIQILDEAKD-GV---SSIDVAE 155 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEecccc------------ceeEEEEcccCCCCccchhhhhcC-ce---eEEEecc
Confidence 566544222111111124555555431 237788888888877664333321 11 1233445
Q ss_pred eEEEEEecCCCCcEEEEEeC-CceeeeEEEcC-CCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeE
Q 016752 264 CLYFSCLCNYPQPVDIWVLK-GCWTKAFSFHR-SVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKA 341 (383)
Q Consensus 264 ~L~~~~~~~~~~~l~iW~l~-~~W~~~~~i~~-~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~ 341 (383)
...+..+..+ +++.+-+. + ++.. .++..+.-+.++++|+.++... .+..+-..|-+|+++
T Consensus 156 heIvaGS~DG--tvRtydiR~G------~l~sDy~g~pit~vs~s~d~nc~La~~----------l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 156 HEIVAGSVDG--TVRTYDIRKG------TLSSDYFGHPITSVSFSKDGNCSLASS----------LDSTLRLLDKETGKL 217 (307)
T ss_pred cEEEeeccCC--cEEEEEeecc------eeehhhcCCcceeEEecCCCCEEEEee----------ccceeeecccchhHH
Confidence 5555555544 34444333 1 1111 2445566677788888777773 455677777777665
Q ss_pred E
Q 016752 342 A 342 (383)
Q Consensus 342 ~ 342 (383)
-
T Consensus 218 L 218 (307)
T KOG0316|consen 218 L 218 (307)
T ss_pred H
Confidence 4
No 72
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=71.07 E-value=90 Score=29.07 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=57.8
Q ss_pred EEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCC---C-----cEEEEEeC-----------Cceeee
Q 016752 229 IVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYP---Q-----PVDIWVLK-----------GCWTKA 289 (383)
Q Consensus 229 il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~---~-----~l~iW~l~-----------~~W~~~ 289 (383)
.+.||.++.... .+|........ . ..+..+|+|++....... . .+++-... .+|..
T Consensus 88 t~vyDt~t~av~--~~P~l~~pk~~-p-isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 88 TLVYDTDTRAVA--TGPRLHSPKRC-P-ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred eEEEECCCCeEe--ccCCCCCCCcc-e-EEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 888999888777 44442221111 2 233447889988764221 0 33433221 35554
Q ss_pred EEEcC-CCC--c-e----eEEEEEEeCCCEEEEEeccCCCccccCCCc--EEEEEeCCCCeEEEEEE
Q 016752 290 FSFHR-SVG--D-Y----VKALAYSKSEDKVLVDKFKYGEEDDDINRW--ELYWYDPQSQKAADQVT 346 (383)
Q Consensus 290 ~~i~~-~~~--~-~----~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~--~~~~ydl~~~~~~~~v~ 346 (383)
+++ .+. . . +..-++. +|..|++.. .+. ..+.||.++.+|+ ++.
T Consensus 163 --LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~----------~~~~~GTysfDt~~~~W~-~~G 215 (342)
T PF07893_consen 163 --LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSV----------NGRRWGTYSFDTESHEWR-KHG 215 (342)
T ss_pred --CCCCCccccCCcccceEEEEEEe-cCCeEEEEe----------cCCceEEEEEEcCCccee-ecc
Confidence 332 121 1 1 4445556 788999973 444 7999999999999 763
No 73
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=70.05 E-value=70 Score=27.38 Aligned_cols=134 Identities=14% Similarity=0.092 Sum_probs=68.0
Q ss_pred EEEEEEcCCC--ceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceee-EecCCCcCCcCCee
Q 016752 178 EVSVYSLRSN--SWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQ-EVPLPHLEDKKNVL 254 (383)
Q Consensus 178 ~~~vyss~~~--~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~ 254 (383)
.+..++..++ .|+.-- ..... .....++.-+|.+|...... .+.++|..+++-. ...++.....
T Consensus 4 ~l~~~d~~tG~~~W~~~~-~~~~~-~~~~~~~~~~~~v~~~~~~~-------~l~~~d~~tG~~~W~~~~~~~~~~---- 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL-GPGIG-GPVATAVPDGGRVYVASGDG-------NLYALDAKTGKVLWRFDLPGPISG---- 70 (238)
T ss_dssp EEEEEETTTTEEEEEEEC-SSSCS-SEEETEEEETTEEEEEETTS-------EEEEEETTTSEEEEEEECSSCGGS----
T ss_pred EEEEEECCCCCEEEEEEC-CCCCC-CccceEEEeCCEEEEEcCCC-------EEEEEECCCCCEEEEeeccccccc----
Confidence 4567777665 587632 11100 00002444688888874333 4999998665432 2333433211
Q ss_pred eeEEEEECCeEEEEEecCCCCcEEEEEeC-----CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCc
Q 016752 255 VMFVGNFSGCLYFSCLCNYPQPVDIWVLK-----GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRW 329 (383)
Q Consensus 255 ~~~L~~~~G~L~~~~~~~~~~~l~iW~l~-----~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~ 329 (383)
.....+|.+++.... . .|+.++ ..|.....-....+ ...+....-+++.+++. ...+
T Consensus 71 --~~~~~~~~v~v~~~~-~----~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~g 132 (238)
T PF13360_consen 71 --APVVDGGRVYVGTSD-G----SLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVG----------TSSG 132 (238)
T ss_dssp --GEEEETTEEEEEETT-S----EEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEE----------ETCS
T ss_pred --eeeecccccccccce-e----eeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEE----------eccC
Confidence 125556666655521 1 333333 46663222111111 11111122236778887 3588
Q ss_pred EEEEEeCCCCeEE
Q 016752 330 ELYWYDPQSQKAA 342 (383)
Q Consensus 330 ~~~~ydl~~~~~~ 342 (383)
.++.+|+++++..
T Consensus 133 ~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 133 KLVALDPKTGKLL 145 (238)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEEecCCCcEE
Confidence 9999999999875
No 74
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=68.09 E-value=1.3e+02 Score=29.88 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=23.2
Q ss_pred CcceeeCceEEEEEecCCCCCCccEEEEEECCCc--eeeE
Q 016752 204 WDGTFADGHVHWLVTNNPKDDIENLIVAFNLESE--EFQE 241 (383)
Q Consensus 204 ~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e--~~~~ 241 (383)
..+++.+|.+|...... .|.++|..+. .|+.
T Consensus 63 stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~ 95 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKY 95 (527)
T ss_pred cCCEEECCEEEEECCCC-------cEEEEECCCCceeeEe
Confidence 36788999999866544 3999998764 5664
No 75
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=67.89 E-value=90 Score=27.82 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=68.5
Q ss_pred eCceEEEEEecCCCCCCccEEEEEECCCcee-eEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEeCCcee
Q 016752 209 ADGHVHWLVTNNPKDDIENLIVAFNLESEEF-QEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWT 287 (383)
Q Consensus 209 ~~G~lywl~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~~~W~ 287 (383)
-+|.+|=-++.. .+..|-.+|+.+++. ...++|...-.+ -++..+++|+.+.-.+. ..-+|-.+ ...
T Consensus 54 ~~g~LyESTG~y----G~S~l~~~d~~tg~~~~~~~l~~~~FgE-----Git~~~d~l~qLTWk~~--~~f~yd~~-tl~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLY----GQSSLRKVDLETGKVLQSVPLPPRYFGE-----GITILGDKLYQLTWKEG--TGFVYDPN-TLK 121 (264)
T ss_dssp ETTEEEEEECST----TEEEEEEEETTTSSEEEEEE-TTT--EE-----EEEEETTEEEEEESSSS--EEEEEETT-TTE
T ss_pred CCCEEEEeCCCC----CcEEEEEEECCCCcEEEEEECCccccce-----eEEEECCEEEEEEecCC--eEEEEccc-cce
Confidence 357777655443 456799999999876 467888764222 35777999999887655 34444333 344
Q ss_pred eeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEe
Q 016752 288 KAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIH 348 (383)
Q Consensus 288 ~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~ 348 (383)
++.++... +. --|++.+|+.+++. .....++..|+++=+...++.+.
T Consensus 122 ~~~~~~y~-~E---GWGLt~dg~~Li~S----------DGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 122 KIGTFPYP-GE---GWGLTSDGKRLIMS----------DGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEEE-S-SS-----EEEECSSCEEEE-----------SSSEEEEE-TTT-SEEEEEE-E
T ss_pred EEEEEecC-Cc---ceEEEcCCCEEEEE----------CCccceEEECCcccceEEEEEEE
Confidence 44455431 11 23444678888888 36779999999887666466553
No 76
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=66.77 E-value=1e+02 Score=28.13 Aligned_cols=144 Identities=8% Similarity=0.028 Sum_probs=69.6
Q ss_pred cEEEEEEcC-CCceEEeccCCCeeeecCCcceee--CceEEEEEecCCCCCCccEEEEEECCCc-ee-eEec-CCCcCCc
Q 016752 177 TEVSVYSLR-SNSWRRIRVDFPYYILHGWDGTFA--DGHVHWLVTNNPKDDIENLIVAFNLESE-EF-QEVP-LPHLEDK 250 (383)
Q Consensus 177 ~~~~vyss~-~~~Wr~~~~~~p~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~il~fD~~~e-~~-~~i~-~P~~~~~ 250 (383)
..+.+|+.. ++++.... ..+... ....+.+ +|...+.+.... ..|.+||+.+. .. ..+. ++...
T Consensus 57 ~~i~~~~~~~~g~l~~~~-~~~~~~--~p~~i~~~~~g~~l~v~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~-- 126 (330)
T PRK11028 57 FRVLSYRIADDGALTFAA-ESPLPG--SPTHISTDHQGRFLFSASYNA-----NCVSVSPLDKDGIPVAPIQIIEGLE-- 126 (330)
T ss_pred CcEEEEEECCCCceEEee-eecCCC--CceEEEECCCCCEEEEEEcCC-----CeEEEEEECCCCCCCCceeeccCCC--
Confidence 445667765 45676554 222110 1122333 465444443322 24888988642 11 1111 11111
Q ss_pred CCeeeeEEEEECCeEEEEEecCCCCcEEEEEeC--Cceeee--EEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccC
Q 016752 251 KNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLK--GCWTKA--FSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDI 326 (383)
Q Consensus 251 ~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~--~~W~~~--~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~ 326 (383)
... .+. ..-+|+..++..... ..+.+|-++ +.-... ..+....+...+-+.++++|+.+|+.. .
T Consensus 127 ~~~-~~~-~~p~g~~l~v~~~~~-~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~---------~ 194 (330)
T PRK11028 127 GCH-SAN-IDPDNRTLWVPCLKE-DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN---------E 194 (330)
T ss_pred ccc-EeE-eCCCCCEEEEeeCCC-CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe---------c
Confidence 111 111 222555544444332 278999887 322211 112211233345577788988888873 2
Q ss_pred CCcEEEEEeCC--CCeEE
Q 016752 327 NRWELYWYDPQ--SQKAA 342 (383)
Q Consensus 327 ~~~~~~~ydl~--~~~~~ 342 (383)
....+..||+. +++++
T Consensus 195 ~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred CCCEEEEEEEeCCCCCEE
Confidence 46788888887 45655
No 77
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=66.27 E-value=1.1e+02 Score=28.07 Aligned_cols=94 Identities=9% Similarity=-0.084 Sum_probs=52.0
Q ss_pred EEEEEECCC-ceeeEec-CCCcCCcCCeeeeEEEEE-CCeEEEEEecCCCCcEEEEEeC--CceeeeEEEcCCCCceeEE
Q 016752 228 LIVAFNLES-EEFQEVP-LPHLEDKKNVLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLK--GCWTKAFSFHRSVGDYVKA 302 (383)
Q Consensus 228 ~il~fD~~~-e~~~~i~-~P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~l~iW~l~--~~W~~~~~i~~~~~~~~~~ 302 (383)
.|-.||+.+ .++..+. ++.. .... .+... +|+..++..... ..+.+|..+ +.+....++.. +.....
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~-~~~~----~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~--~~~p~~ 84 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVP-GQVQ----PMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPL--PGSPTH 84 (330)
T ss_pred CEEEEEECCCCceeeeeEEecC-CCCc----cEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecC--CCCceE
Confidence 388888863 4544443 2211 1111 13322 555444433222 378889887 56766665553 222345
Q ss_pred EEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCC
Q 016752 303 LAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQS 338 (383)
Q Consensus 303 ~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~ 338 (383)
+++.++|+.+|... ..+..+..||+++
T Consensus 85 i~~~~~g~~l~v~~---------~~~~~v~v~~~~~ 111 (330)
T PRK11028 85 ISTDHQGRFLFSAS---------YNANCVSVSPLDK 111 (330)
T ss_pred EEECCCCCEEEEEE---------cCCCeEEEEEECC
Confidence 66677888888774 2456788888763
No 78
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=63.92 E-value=32 Score=26.15 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=29.7
Q ss_pred CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEE
Q 016752 119 NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLV 167 (383)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~ 167 (383)
..+++.||.|+.|. |..+... ......+-+++..+.|+|+...
T Consensus 9 A~Vm~~d~~tk~W~--P~~~~~~----~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWV--PAGGGSQ----GFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEE--cCCCCCC----CcceEEEEEcCCCCEEEEEEee
Confidence 35889999999865 4433110 3355567778888899999865
No 79
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=62.07 E-value=22 Score=26.68 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=30.0
Q ss_pred CcEEEEcCCcc-ceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEE
Q 016752 119 NGIAFWNPSTK-EHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQ 168 (383)
Q Consensus 119 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~ 168 (383)
..++++||.|+ .|. |..+ ......+-+|+..+.|+||.+..
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~-------~~~~V~~y~~~~~ntfRIi~~~~ 52 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASK-------HAVTVSYFYDSTRNVYRIISVGG 52 (111)
T ss_pred eEEEEECCCCcceeE--eCCC-------CceeEEEEecCCCcEEEEEEecC
Confidence 46899999997 654 4432 22466788899999999999753
No 80
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=62.07 E-value=20 Score=19.84 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.1
Q ss_pred CCEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 309 EDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 309 g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
++.+|+. ..++.++.+|.++++..
T Consensus 6 ~~~v~~~----------~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 6 DGTVYVG----------STDGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEE----------cCCCEEEEEEcccCcEE
Confidence 3578887 46789999999988765
No 81
>PRK04043 tolB translocation protein TolB; Provisional
Probab=60.83 E-value=1.6e+02 Score=28.30 Aligned_cols=189 Identities=10% Similarity=0.058 Sum_probs=102.7
Q ss_pred CCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCC
Q 016752 118 ENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFP 197 (383)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p 197 (383)
...+++.|..|++...|-..+.. .. ...+.|. ++..++.... .....+.+++..++.++.+. ..+
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~------~~--~~~~SPD-G~~la~~~~~-----~g~~~Iy~~dl~~g~~~~LT-~~~ 276 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM------LV--VSDVSKD-GSKLLLTMAP-----KGQPDIYLYDTNTKTLTQIT-NYP 276 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc------EE--eeEECCC-CCEEEEEEcc-----CCCcEEEEEECCCCcEEEcc-cCC
Confidence 35799999999998888643221 11 1234442 2333333321 13467788888889998876 333
Q ss_pred eeeecCCcceeeCc-eEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCC---
Q 016752 198 YYILHGWDGTFADG-HVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNY--- 273 (383)
Q Consensus 198 ~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~--- 273 (383)
.. .......=|| .+|+...... ...|...|+.+...+.+-.-.. . .......+..|.++.....
T Consensus 277 ~~--d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~-~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 277 GI--DVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----N-NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred Cc--cCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----c-CceECCCCCEEEEEEcCCCccc
Confidence 21 1111222356 6888765432 2359999999888765432111 1 1112222334555544321
Q ss_pred -CCcEEEEEeC---CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEE
Q 016752 274 -PQPVDIWVLK---GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVT 346 (383)
Q Consensus 274 -~~~l~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~ 346 (383)
....+||+++ +.+..+..-. ... ...+++||+.|++.... .....+..+++..+.-. ++.
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~~----~~~-~p~~SPDG~~I~f~~~~-------~~~~~L~~~~l~g~~~~-~l~ 408 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTANG----VNQ-FPRFSSDGGSIMFIKYL-------GNQSALGIIRLNYNKSF-LFP 408 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCCC----CcC-CeEECCCCCEEEEEEcc-------CCcEEEEEEecCCCeeE-Eee
Confidence 1246888887 5544332211 111 24567899888887411 13346899999887766 554
No 82
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=60.55 E-value=10 Score=22.47 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=17.5
Q ss_pred cceeeCceEEEEEecCCCCCCccEEEEEECCC
Q 016752 205 DGTFADGHVHWLVTNNPKDDIENLIVAFNLES 236 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~ 236 (383)
.+++.+|.+|....++. +.+||.++
T Consensus 16 ~~~v~~g~vyv~~~dg~-------l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGN-------LYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTSE-------EEEEETT-
T ss_pred CCEEECCEEEEEcCCCE-------EEEEeCCC
Confidence 56888999999876553 99999864
No 83
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=60.13 E-value=98 Score=29.50 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=72.8
Q ss_pred cCeeEEEecC-----CCcEEEEcCCccceeecCCCCCCCcCc--cceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEE
Q 016752 108 CNGLIALKND-----ENGIAFWNPSTKEHLILPKFWGDLKDK--VHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVS 180 (383)
Q Consensus 108 ~~GLll~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~--~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~ 180 (383)
-+.|+|+... .-+++|.|..|++..+|.........- .....+.=||-=.+++||++-.... ...+
T Consensus 237 vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~~------~l~F- 309 (448)
T PF12458_consen 237 VGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDMD------GLEF- 309 (448)
T ss_pred cCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccCC------CceE-
Confidence 3667887762 237999999999999887654332110 0223333344445666665443210 0000
Q ss_pred EEEcCCCceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEE
Q 016752 181 VYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGN 260 (383)
Q Consensus 181 vyss~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~ 260 (383)
=|.+. .|. -..+||.+..... ....++.||+-+.+. .-|..+ +++ -.-
T Consensus 310 --------~r~vr--SPN----------GEDvLYvF~~~~~---g~~~Ll~YN~I~k~v---~tPi~c--hG~----alf 357 (448)
T PF12458_consen 310 --------ERKVR--SPN----------GEDVLYVFYAREE---GRYLLLPYNLIRKEV---ATPIIC--HGY----ALF 357 (448)
T ss_pred --------EEEec--CCC----------CceEEEEEEECCC---CcEEEEechhhhhhh---cCCeec--cce----eEe
Confidence 01111 111 1347888876654 356788888766543 344433 333 344
Q ss_pred ECCeEEEEEec-CCC---CcEEEEEe
Q 016752 261 FSGCLYFSCLC-NYP---QPVDIWVL 282 (383)
Q Consensus 261 ~~G~L~~~~~~-~~~---~~l~iW~l 282 (383)
.+|+|++.... .+. ..++||.-
T Consensus 358 ~DG~l~~fra~~~EptrvHp~QiWqT 383 (448)
T PF12458_consen 358 EDGRLVYFRAEGDEPTRVHPMQIWQT 383 (448)
T ss_pred cCCEEEEEecCCCCcceeccceeecC
Confidence 58999999876 222 14566654
No 84
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=57.60 E-value=29 Score=20.30 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.8
Q ss_pred CCCcEEEEEeCCCCeEE
Q 016752 326 INRWELYWYDPQSQKAA 342 (383)
Q Consensus 326 ~~~~~~~~ydl~~~~~~ 342 (383)
..++.++.+|.+|++..
T Consensus 7 ~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TTTSEEEEEETTTTSEE
T ss_pred CCCCEEEEEECCCCCEE
Confidence 47889999999999876
No 85
>PF13013 F-box-like_2: F-box-like domain
Probab=57.58 E-value=2.6 Score=31.88 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHccCCcccceeeeecch
Q 016752 2 AGLPTDINIDILSRLSIKCLLRFKCASK 29 (383)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~sl~r~r~VcK 29 (383)
.+||+||+..|+......++...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 5799999999999999887765555555
No 86
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=57.45 E-value=37 Score=19.87 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEE
Q 016752 308 SEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTI 347 (383)
Q Consensus 308 ~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~ 347 (383)
+++.+|+.. .....+..+|+++.+...++.+
T Consensus 2 d~~~lyv~~---------~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 2 DGTKLYVTN---------SGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCEEEEEe---------CCCCEEEEEECCCCeEEEEEEC
Confidence 567788873 3567899999999888756555
No 87
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=54.42 E-value=48 Score=31.67 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=38.7
Q ss_pred cEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCCC-EEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEE
Q 016752 276 PVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSED-KVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVT 346 (383)
Q Consensus 276 ~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~-~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~ 346 (383)
+++|+.++ ..=.++..|.+. ...+.-..+.++|. .|+.. .....++.||+++.++. ++.
T Consensus 236 ~lrifqvDGk~N~~lqS~~l~-~fPi~~a~f~p~G~~~i~~s----------~rrky~ysyDle~ak~~-k~~ 296 (514)
T KOG2055|consen 236 TLRIFQVDGKVNPKLQSIHLE-KFPIQKAEFAPNGHSVIFTS----------GRRKYLYSYDLETAKVT-KLK 296 (514)
T ss_pred cEEEEEecCccChhheeeeec-cCccceeeecCCCceEEEec----------ccceEEEEeeccccccc-ccc
Confidence 67777777 222355666551 12345567777887 55555 35567999999999999 774
No 88
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=53.20 E-value=2e+02 Score=26.98 Aligned_cols=105 Identities=9% Similarity=0.017 Sum_probs=61.5
Q ss_pred EEEEECCCcee-eEecCCCcCCcCCeeeeEEEEECCeEEEEEec-------CCCCcEEEEEeCCceeeeEEEcC--C---
Q 016752 229 IVAFNLESEEF-QEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLC-------NYPQPVDIWVLKGCWTKAFSFHR--S--- 295 (383)
Q Consensus 229 il~fD~~~e~~-~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~-------~~~~~l~iW~l~~~W~~~~~i~~--~--- 295 (383)
|.++|..+.+. ..|+.-.. + ...+...+..|+++... +....+.+|-.+ ....+.+|+. .
T Consensus 29 v~ViD~~~~~v~g~i~~G~~----P--~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 29 VYTIDGEAGRVLGMTDGGFL----P--NPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-THLPIADIELPEGPRF 101 (352)
T ss_pred EEEEECCCCEEEEEEEccCC----C--ceeECCCCCEEEEEeccccccccCCCCCEEEEEECc-cCcEEeEEccCCCchh
Confidence 99999988664 44543211 1 11122233445555541 112256666655 3344445553 1
Q ss_pred -CCceeEEEEEEeCCCEEEEEeccCCCccccCC-CcEEEEEeCCCCeEEEEEEEec
Q 016752 296 -VGDYVKALAYSKSEDKVLVDKFKYGEEDDDIN-RWELYWYDPQSQKAADQVTIHG 349 (383)
Q Consensus 296 -~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~-~~~~~~ydl~~~~~~~~v~~~~ 349 (383)
.+.....+++++||+.+|+.. .. +..+-.+|++++++..++.+.+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n---------~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQ---------FSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred hccCccceEEECCCCCEEEEec---------CCCCCEEEEEECCCCcEEEEEeCCC
Confidence 123445678889999999873 23 6789999999999985666643
No 89
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=53.09 E-value=30 Score=33.40 Aligned_cols=78 Identities=14% Similarity=0.045 Sum_probs=48.0
Q ss_pred EECCeEEEEEecCCCCcEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCC
Q 016752 260 NFSGCLYFSCLCNYPQPVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQS 338 (383)
Q Consensus 260 ~~~G~L~~~~~~~~~~~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~ 338 (383)
.-+|+-.++..... ++.||-|. ..=..+..+.. -+..+..+++.+|.+. .|.+ ..++.+.+||+.+
T Consensus 474 ~pdgrtLivGGeas--tlsiWDLAapTprikaelts-sapaCyALa~spDakv-cFsc---------csdGnI~vwDLhn 540 (705)
T KOG0639|consen 474 LPDGRTLIVGGEAS--TLSIWDLAAPTPRIKAELTS-SAPACYALAISPDAKV-CFSC---------CSDGNIAVWDLHN 540 (705)
T ss_pred cCCCceEEeccccc--eeeeeeccCCCcchhhhcCC-cchhhhhhhcCCccce-eeee---------ccCCcEEEEEccc
Confidence 34676666665433 89999998 32111111211 1134566777888664 5543 4788999999999
Q ss_pred CeEEEEEEEeccCC
Q 016752 339 QKAADQVTIHGVPQ 352 (383)
Q Consensus 339 ~~~~~~v~~~~~~~ 352 (383)
+++. + +++|...
T Consensus 541 q~~V-r-qfqGhtD 552 (705)
T KOG0639|consen 541 QTLV-R-QFQGHTD 552 (705)
T ss_pred ceee-e-cccCCCC
Confidence 9977 4 3555544
No 90
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=52.76 E-value=2.1e+02 Score=27.16 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=78.8
Q ss_pred cEEEEEEcCCC-----ceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCce---eeEecCCCcC
Q 016752 177 TEVSVYSLRSN-----SWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEE---FQEVPLPHLE 248 (383)
Q Consensus 177 ~~~~vyss~~~-----~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~---~~~i~~P~~~ 248 (383)
..+.+.+..++ .|+.+....+... . ..-..++.+|.++.... ....|++.|+.+-. |..+-+|...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~-~--~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~~ 325 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVE-Y--YVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPEDE 325 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-E-E--EEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceE-E--EEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCCCC
Confidence 55666666654 6666541111100 0 12234778888776443 34579999998765 5643333221
Q ss_pred CcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEeCCceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCC
Q 016752 249 DKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINR 328 (383)
Q Consensus 249 ~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~ 328 (383)
. .. ...+...++.|.+....+....|.++-++..|.....-.+..+. ...+....+++.+++..-.. ...
T Consensus 326 ~--~~-l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~-v~~~~~~~~~~~~~~~~ss~------~~P 395 (414)
T PF02897_consen 326 D--VS-LEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGS-VSGVSGDFDSDELRFSYSSF------TTP 395 (414)
T ss_dssp S--EE-EEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSE-EEEEES-TT-SEEEEEEEET------TEE
T ss_pred c--ee-EEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceE-EeccCCCCCCCEEEEEEeCC------CCC
Confidence 1 11 22345568888888777663344444444245544322222221 11222224567788873110 234
Q ss_pred cEEEEEeCCCCeEEEEEE
Q 016752 329 WELYWYDPQSQKAADQVT 346 (383)
Q Consensus 329 ~~~~~ydl~~~~~~~~v~ 346 (383)
..++.||+.+++.+ .++
T Consensus 396 ~~~y~~d~~t~~~~-~~k 412 (414)
T PF02897_consen 396 PTVYRYDLATGELT-LLK 412 (414)
T ss_dssp EEEEEEETTTTCEE-EEE
T ss_pred CEEEEEECCCCCEE-EEE
Confidence 58999999999999 664
No 91
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.27 E-value=1.1e+02 Score=28.37 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=42.9
Q ss_pred eEEEEEecCCCCcEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 264 CLYFSCLCNYPQPVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 264 ~L~~~~~~~~~~~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
..+.....+. +|.+|.+. + ..++++.- .....+-+++++.|+.|+=+ ..++.+-+||+++++-.
T Consensus 305 ~~l~s~SrDk--tIk~wdv~tg--~cL~tL~g-hdnwVr~~af~p~Gkyi~Sc----------aDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 305 QVLGSGSRDK--TIKIWDVSTG--MCLFTLVG-HDNWVRGVAFSPGGKYILSC----------ADDKTLRVWDLKNLQCM 369 (406)
T ss_pred cEEEeecccc--eEEEEeccCC--eEEEEEec-ccceeeeeEEcCCCeEEEEE----------ecCCcEEEEEeccceee
Confidence 3444444444 89999988 5 22333332 12456778888877766666 47889999999999876
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=49.45 E-value=2.1e+02 Score=26.16 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=67.4
Q ss_pred CceEEEEEecCCCCCCccEEEEEECCCcee-eEecCCCcCCcCCeeeeEEEEE-CCeEEEEEecCCCCcEEEEEeC-Cce
Q 016752 210 DGHVHWLVTNNPKDDIENLIVAFNLESEEF-QEVPLPHLEDKKNVLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLK-GCW 286 (383)
Q Consensus 210 ~G~lywl~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~l~iW~l~-~~W 286 (383)
.|.+|..+..+. .|-.+|--++.. ..|.--- .+-+-+.+... +|+-.+...... ...+|.+- +.=
T Consensus 272 t~~lYvTaSkDG------~IklwDGVS~rCv~t~~~AH----~gsevcSa~Ftkn~kyiLsSG~DS--~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 272 TGSLYVTASKDG------AIKLWDGVSNRCVRTIGNAH----GGSEVCSAVFTKNGKYILSSGKDS--TVKLWEISTGRM 339 (430)
T ss_pred CccEEEEeccCC------cEEeeccccHHHHHHHHhhc----CCceeeeEEEccCCeEEeecCCcc--eeeeeeecCCce
Confidence 789998876654 377788654443 3332111 11102233333 455444443333 78999998 544
Q ss_pred eeeEEEcCCCC-ceeEEEEEEe-CCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEeccCCCeeeEEEEE
Q 016752 287 TKAFSFHRSVG-DYVKALAYSK-SEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCV 361 (383)
Q Consensus 287 ~~~~~i~~~~~-~~~~~~~~~~-~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~~~~~~~~~~~y~ 361 (383)
.+.++=.-..+ +..+..++.. +.|.|++.+ -....++.||-++..-. .+.-.|...- .+.+.+.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pD---------Eas~slcsWdaRtadr~-~l~slgHn~a-~R~i~HS 405 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPD---------EASNSLCSWDARTADRV-ALLSLGHNGA-VRWIVHS 405 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccc---------cccCceeeccccchhhh-hhcccCCCCC-ceEEEeC
Confidence 44443321111 3344444443 456777763 24567999998876654 4433444333 3444443
No 93
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=49.26 E-value=3.4e+02 Score=28.54 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=23.9
Q ss_pred CcceeeCceEEEEEecCCCCCCccEEEEEECCCc--eeeE
Q 016752 204 WDGTFADGHVHWLVTNNPKDDIENLIVAFNLESE--EFQE 241 (383)
Q Consensus 204 ~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e--~~~~ 241 (383)
..++.++|++|...... .++++|..+. .|+.
T Consensus 188 ~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE
Confidence 37899999999976544 3999998754 5765
No 94
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=47.98 E-value=1.9e+02 Score=25.30 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=58.6
Q ss_pred EEEEEECCCcee-eEecCCCc-CCcCCeeeeEEEE-ECCeEEEEEecCCCCcEEEEEeCCceeeeEEEcCCCCceeEEEE
Q 016752 228 LIVAFNLESEEF-QEVPLPHL-EDKKNVLVMFVGN-FSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALA 304 (383)
Q Consensus 228 ~il~fD~~~e~~-~~i~~P~~-~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~l~iW~l~~~W~~~~~i~~~~~~~~~~~~ 304 (383)
.|..+|+++.+. ..+..... ..........+.. -+|+..++..... .++.+|-++ +|.....+.. +.....+.
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-~~i~v~d~~-~~~~~~~~~~--~~~~~~~~ 255 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-NRVAVVDAK-TYEVLDYLLV--GQRVWQLA 255 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-CeEEEEECC-CCcEEEEEEe--CCCcceEE
Confidence 488899987654 33332211 0000000112222 3565544433222 267888665 4554444332 22234567
Q ss_pred EEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEec
Q 016752 305 YSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHG 349 (383)
Q Consensus 305 ~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~ 349 (383)
++++|+.|+... ..++.+..||+++.+....+.+.+
T Consensus 256 ~~~~g~~l~~~~---------~~~~~i~v~d~~~~~~~~~~~~~~ 291 (300)
T TIGR03866 256 FTPDEKYLLTTN---------GVSNDVSVIDVAALKVIKSIKVGR 291 (300)
T ss_pred ECCCCCEEEEEc---------CCCCeEEEEECCCCcEEEEEEccc
Confidence 778888877752 246789999999999653666533
No 95
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=47.91 E-value=3.4e+02 Score=28.12 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=71.7
Q ss_pred cceeeC--ceEEEEEecCCCCCCccEEEEEECCCceeeEec-CCCcCCcCCeeeeEEE-EECCeEEEEEecCCCCcEEEE
Q 016752 205 DGTFAD--GHVHWLVTNNPKDDIENLIVAFNLESEEFQEVP-LPHLEDKKNVLVMFVG-NFSGCLYFSCLCNYPQPVDIW 280 (383)
Q Consensus 205 ~~v~~~--G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~-~~~G~L~~~~~~~~~~~l~iW 280 (383)
.+|.+| |-+-..+..+. ..|.+-++.+++.-.+. .... +. ..|. ...|.+.+..+... ++.+|
T Consensus 439 scvavD~sGelV~AG~~d~-----F~IfvWS~qTGqllDiLsGHEg----PV--s~l~f~~~~~~LaS~SWDk--TVRiW 505 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDS-----FEIFVWSVQTGQLLDILSGHEG----PV--SGLSFSPDGSLLASGSWDK--TVRIW 505 (893)
T ss_pred eEEEEcCCCCEEEeeccce-----EEEEEEEeecCeeeehhcCCCC----cc--eeeEEccccCeEEeccccc--eEEEE
Confidence 456666 76666654432 34888888888766542 1111 11 1122 23566555555444 89999
Q ss_pred EeCCceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeE
Q 016752 281 VLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKA 341 (383)
Q Consensus 281 ~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~ 341 (383)
..-.+|..+.++... ....-+.+.++|++|-+. .-++.+-.||.+...-
T Consensus 506 ~if~s~~~vEtl~i~--sdvl~vsfrPdG~elaVa----------TldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 506 DIFSSSGTVETLEIR--SDVLAVSFRPDGKELAVA----------TLDGQITFFDIKEAVQ 554 (893)
T ss_pred EeeccCceeeeEeec--cceeEEEEcCCCCeEEEE----------EecceEEEEEhhhcee
Confidence 999889988888862 234456777889998888 4677888898876553
No 96
>PLN00181 protein SPA1-RELATED; Provisional
Probab=45.97 E-value=3.8e+02 Score=28.20 Aligned_cols=183 Identities=14% Similarity=0.141 Sum_probs=89.1
Q ss_pred eEEEecCCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCc-e
Q 016752 111 LIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNS-W 189 (383)
Q Consensus 111 Lll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~-W 189 (383)
.|+....+..+.|||..+++....-. .. ......+.+++..+.+ ++... ....+.+|+..++. .
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~--~H-----~~~V~~l~~~p~~~~~-L~Sgs-------~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMK--EH-----EKRVWSIDYSSADPTL-LASGS-------DDGSVKLWSINQGVSI 611 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEec--CC-----CCCEEEEEEcCCCCCE-EEEEc-------CCCEEEEEECCCCcEE
Confidence 44444445678888887765432111 11 1234456666544433 22222 23467788877642 2
Q ss_pred EEeccCCCeeeecCCcceee---CceEEEEEecCCCCCCccEEEEEECCCce--eeEecCCCcCCcCCeeeeEEEEECCe
Q 016752 190 RRIRVDFPYYILHGWDGTFA---DGHVHWLVTNNPKDDIENLIVAFNLESEE--FQEVPLPHLEDKKNVLVMFVGNFSGC 264 (383)
Q Consensus 190 r~~~~~~p~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~~~~L~~~~G~ 264 (383)
..+..... -..+.+ +|.....+..+ ..|..+|+.+.. ...+. .+. .. -..+...++.
T Consensus 612 ~~~~~~~~------v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~--~h~--~~--V~~v~f~~~~ 673 (793)
T PLN00181 612 GTIKTKAN------ICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMI--GHS--KT--VSYVRFVDSS 673 (793)
T ss_pred EEEecCCC------eEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEec--CCC--CC--EEEEEEeCCC
Confidence 11110000 011211 34444433332 248889987643 22221 111 11 1123334666
Q ss_pred EEEEEecCCCCcEEEEEeC-----CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCC
Q 016752 265 LYFSCLCNYPQPVDIWVLK-----GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQ 339 (383)
Q Consensus 265 L~~~~~~~~~~~l~iW~l~-----~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~ 339 (383)
..+...... ++.||-+. ..|..+.++.- -......+++..+|+.|... ..++.+..|+..+.
T Consensus 674 ~lvs~s~D~--~ikiWd~~~~~~~~~~~~l~~~~g-h~~~i~~v~~s~~~~~lasg----------s~D~~v~iw~~~~~ 740 (793)
T PLN00181 674 TLVSSSTDN--TLKLWDLSMSISGINETPLHSFMG-HTNVKNFVGLSVSDGYIATG----------SETNEVFVYHKAFP 740 (793)
T ss_pred EEEEEECCC--EEEEEeCCCCccccCCcceEEEcC-CCCCeeEEEEcCCCCEEEEE----------eCCCEEEEEECCCC
Confidence 555555444 89999987 24555555432 11223446666676655545 35678888887655
No 97
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=45.47 E-value=54 Score=23.79 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=22.8
Q ss_pred EEEEeCCCEEEEEecc-C-CCccc------cCCCcEEEEEeCCCCeEEEEE
Q 016752 303 LAYSKSEDKVLVDKFK-Y-GEEDD------DINRWELYWYDPQSQKAADQV 345 (383)
Q Consensus 303 ~~~~~~g~~v~l~~~~-~-~~~~~------~~~~~~~~~ydl~~~~~~~~v 345 (383)
+.+.++++.||+.+-. + .-++. ....++++.||+.|++.+ .+
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~-vl 52 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETT-VL 52 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEE-EE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEE-Ee
Confidence 4566665788888522 1 11110 123578999999999998 55
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=43.93 E-value=4.2e+02 Score=28.03 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=39.4
Q ss_pred CCeEEEEEecCCCCcEEEEEeC-----CceeeeEEEcC-CCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEe
Q 016752 262 SGCLYFSCLCNYPQPVDIWVLK-----GCWTKAFSFHR-SVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYD 335 (383)
Q Consensus 262 ~G~L~~~~~~~~~~~l~iW~l~-----~~W~~~~~i~~-~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~yd 335 (383)
+|.+..+....+ .+.||.++ ..|..+..-.- .....+.-.+.+++|+.+.+. ..+..+..|+
T Consensus 149 ~~~fLAvss~dG--~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~----------~~d~~Vkvy~ 216 (933)
T KOG1274|consen 149 KGNFLAVSSCDG--KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP----------PVDNTVKVYS 216 (933)
T ss_pred CCCEEEEEecCc--eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee----------ccCCeEEEEc
Confidence 455555555555 78999988 44544432211 112344555666776666665 2566677777
Q ss_pred CCCCeEE
Q 016752 336 PQSQKAA 342 (383)
Q Consensus 336 l~~~~~~ 342 (383)
.++-...
T Consensus 217 r~~we~~ 223 (933)
T KOG1274|consen 217 RKGWELQ 223 (933)
T ss_pred cCCceeh
Confidence 7665544
No 99
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=43.52 E-value=15 Score=33.71 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHccCCc--------ccceeeeecchhhhhhcCCh
Q 016752 2 AGLPTDINIDILSRLSI--------KCLLRFKCASKSFCSLIDSQ 38 (383)
Q Consensus 2 ~~LP~Dll~eIL~rLP~--------~sl~r~r~VcK~W~~li~~~ 38 (383)
++||.++|.+|+.|..- ++.+.++.|||.|+.+..+.
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 57999999999999862 36889999999999976543
No 100
>PRK05137 tolB translocation protein TolB; Provisional
Probab=42.38 E-value=3.2e+02 Score=26.25 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=63.1
Q ss_pred eeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEeC-Cce
Q 016752 208 FADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLK-GCW 286 (383)
Q Consensus 208 ~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~-~~W 286 (383)
++++.+.|+............|...|.....-+.+...... -. .......+..|.++........+-+|-++ +..
T Consensus 163 ~f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~---v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~ 238 (435)
T PRK05137 163 YFDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSL---VL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQR 238 (435)
T ss_pred cCCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCC---eE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcE
Confidence 56778888875432111234588888766554433211111 01 11222223356666654443355555555 544
Q ss_pred eeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEE
Q 016752 287 TKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQV 345 (383)
Q Consensus 287 ~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v 345 (383)
..+.... ....-..+++||+.|++.... .....++.+|+++++.+ ++
T Consensus 239 ~~l~~~~----g~~~~~~~SPDG~~la~~~~~-------~g~~~Iy~~d~~~~~~~-~L 285 (435)
T PRK05137 239 ELVGNFP----GMTFAPRFSPDGRKVVMSLSQ-------GGNTDIYTMDLRSGTTT-RL 285 (435)
T ss_pred EEeecCC----CcccCcEECCCCCEEEEEEec-------CCCceEEEEECCCCceE-Ec
Confidence 3222111 112234566788877765210 12457999999999888 66
No 101
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=41.34 E-value=2.5e+02 Score=24.77 Aligned_cols=126 Identities=17% Similarity=0.086 Sum_probs=66.5
Q ss_pred CceEEEEEecCCCCCCccEEEEEECCCceeeEe-cCCCcCCcCCeeeeEEEEE---CCeEEEEEecCCCCcEEEEEeC-C
Q 016752 210 DGHVHWLVTNNPKDDIENLIVAFNLESEEFQEV-PLPHLEDKKNVLVMFVGNF---SGCLYFSCLCNYPQPVDIWVLK-G 284 (383)
Q Consensus 210 ~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~---~G~L~~~~~~~~~~~l~iW~l~-~ 284 (383)
.|.+...+++ ..+...|++++++++. ....+ | +.-++. +|.+. ... ++ .+.+||-++ +
T Consensus 126 enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGHtD-----Y--vH~vv~R~~~~qil-sG~-ED-GtvRvWd~kt~ 188 (325)
T KOG0649|consen 126 ENSILFAGGD-------GVIYQVDLEDGRIQREYRGHTD-----Y--VHSVVGRNANGQIL-SGA-ED-GTVRVWDTKTQ 188 (325)
T ss_pred CCcEEEecCC-------eEEEEEEecCCEEEEEEcCCcc-----e--eeeeeecccCccee-ecC-CC-ccEEEEecccc
Confidence 3666666543 3589999999999864 33222 2 222222 23222 222 22 389999998 4
Q ss_pred ceeeeEEEcCC-----C-Cce-eEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEeccCCCeeeE
Q 016752 285 CWTKAFSFHRS-----V-GDY-VKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDT 357 (383)
Q Consensus 285 ~W~~~~~i~~~-----~-~~~-~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~~~~~~~~~ 357 (383)
+=++ +|.+. + +.. --..++..+.+. +++ ..+.++-.|++.+-+-...+.|.+. -+.
T Consensus 189 k~v~--~ie~yk~~~~lRp~~g~wigala~~edW-lvC----------GgGp~lslwhLrsse~t~vfpipa~----v~~ 251 (325)
T KOG0649|consen 189 KHVS--MIEPYKNPNLLRPDWGKWIGALAVNEDW-LVC----------GGGPKLSLWHLRSSESTCVFPIPAR----VHL 251 (325)
T ss_pred ceeE--EeccccChhhcCcccCceeEEEeccCce-EEe----------cCCCceeEEeccCCCceEEEecccc----eeE
Confidence 3332 33331 1 111 112344445565 444 3677899999988776634444432 344
Q ss_pred EEEEcccccccc
Q 016752 358 LVCVDSLVSLAA 369 (383)
Q Consensus 358 ~~y~~sl~~~~~ 369 (383)
..|.+.+|-+.+
T Consensus 252 v~F~~d~vl~~G 263 (325)
T KOG0649|consen 252 VDFVDDCVLIGG 263 (325)
T ss_pred eeeecceEEEec
Confidence 455555554433
No 102
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.83 E-value=62 Score=30.56 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCeEEEEEecCCCCcEEEEEeC----CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCC
Q 016752 262 SGCLYFSCLCNYPQPVDIWVLK----GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQ 337 (383)
Q Consensus 262 ~G~L~~~~~~~~~~~l~iW~l~----~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~ 337 (383)
+|.=.+..+... ++..|-++ +.|.-+.. +...-++++.||+.+++. ..+.++..||.+
T Consensus 323 Dg~~~V~Gs~dr--~i~~wdlDgn~~~~W~gvr~------~~v~dlait~Dgk~vl~v----------~~d~~i~l~~~e 384 (519)
T KOG0293|consen 323 DGFRFVTGSPDR--TIIMWDLDGNILGNWEGVRD------PKVHDLAITYDGKYVLLV----------TVDKKIRLYNRE 384 (519)
T ss_pred CCceeEecCCCC--cEEEecCCcchhhccccccc------ceeEEEEEcCCCcEEEEE----------ecccceeeechh
Confidence 444433333333 89999998 78875543 123345556666666665 244455555555
Q ss_pred CCe
Q 016752 338 SQK 340 (383)
Q Consensus 338 ~~~ 340 (383)
++.
T Consensus 385 ~~~ 387 (519)
T KOG0293|consen 385 ARV 387 (519)
T ss_pred hhh
Confidence 544
No 103
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=38.70 E-value=1.4e+02 Score=26.18 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=48.5
Q ss_pred cceeeCceEEEEEecCCCCCCccEEEEEECCCce-eeEecCCCcCC-------cCCeeeeEEEEECCeEEEEEecCC-CC
Q 016752 205 DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEE-FQEVPLPHLED-------KKNVLVMFVGNFSGCLYFSCLCNY-PQ 275 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~-~~~i~~P~~~~-------~~~~~~~~L~~~~G~L~~~~~~~~-~~ 275 (383)
..|+.+|++|+...... .|+.||+.++. .....+|.... ..++..+.+++...-|.++-...+ ..
T Consensus 72 g~VVynGs~yynk~~t~------~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g 145 (249)
T KOG3545|consen 72 GHVVYNGSLYYNKAGTR------NIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAG 145 (249)
T ss_pred ceEEEcceEEeeccCCc------ceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCC
Confidence 56899999999875543 59999999854 34445665431 112225678888888888766543 33
Q ss_pred cEEEEEeC
Q 016752 276 PVDIWVLK 283 (383)
Q Consensus 276 ~l~iW~l~ 283 (383)
.+.|-.|+
T Consensus 146 ~iv~skLd 153 (249)
T KOG3545|consen 146 TIVLSKLD 153 (249)
T ss_pred cEEeeccC
Confidence 56667777
No 104
>PRK04043 tolB translocation protein TolB; Provisional
Probab=38.49 E-value=3.7e+02 Score=25.85 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=58.3
Q ss_pred EEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECC-eEEEEEecCCCCcEEEEEeC---CceeeeEEEcCCCCceeEEE
Q 016752 228 LIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSG-CLYFSCLCNYPQPVDIWVLK---GCWTKAFSFHRSVGDYVKAL 303 (383)
Q Consensus 228 ~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~~l~iW~l~---~~W~~~~~i~~~~~~~~~~~ 303 (383)
.|..+|+.+++-+.+-...... . .... .-+| +|.+...... .-+||.++ +.+.++-.-+. .....
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~---~-~~~~-SPDG~~la~~~~~~g--~~~Iy~~dl~~g~~~~LT~~~~----~d~~p 282 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGML---V-VSDV-SKDGSKLLLTMAPKG--QPDIYLYDTNTKTLTQITNYPG----IDVNG 282 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcE---E-eeEE-CCCCCEEEEEEccCC--CcEEEEEECCCCcEEEcccCCC----ccCcc
Confidence 5999999888776653222110 0 1111 1255 5655554433 56888887 55554322221 11122
Q ss_pred EEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEec
Q 016752 304 AYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHG 349 (383)
Q Consensus 304 ~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~ 349 (383)
.+++||+.|++.... .....++.+|+.+++.+ ++...|
T Consensus 283 ~~SPDG~~I~F~Sdr-------~g~~~Iy~~dl~~g~~~-rlt~~g 320 (419)
T PRK04043 283 NFVEDDKRIVFVSDR-------LGYPNIFMKKLNSGSVE-QVVFHG 320 (419)
T ss_pred EECCCCCEEEEEECC-------CCCceEEEEECCCCCeE-eCccCC
Confidence 467888888887411 12347999999999998 764433
No 105
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=37.64 E-value=3.2e+02 Score=24.99 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=58.5
Q ss_pred CceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEeC--Ccee
Q 016752 210 DGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLK--GCWT 287 (383)
Q Consensus 210 ~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~--~~W~ 287 (383)
.+.|||..-.+. .|+.+|+.+..-+.+..|.... ...+...+|.|..... .+.++..+ +.|+
T Consensus 36 ~~~L~w~DI~~~------~i~r~~~~~g~~~~~~~p~~~~-----~~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~~t 99 (307)
T COG3386 36 RGALLWVDILGG------RIHRLDPETGKKRVFPSPGGFS-----SGALIDAGGRLIACEH-----GVRLLDPDTGGKIT 99 (307)
T ss_pred CCEEEEEeCCCC------eEEEecCCcCceEEEECCCCcc-----cceeecCCCeEEEEcc-----ccEEEeccCCceeE
Confidence 357899876554 3999999999999999887652 1122333344433322 22333333 4444
Q ss_pred eeEEEcCCCC-ceeEEEEEEeCCCEEEEEecc-----CCCccccCCCcEEEEEeCCCCeEE
Q 016752 288 KAFSFHRSVG-DYVKALAYSKSEDKVLVDKFK-----YGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 288 ~~~~i~~~~~-~~~~~~~~~~~g~~v~l~~~~-----~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
+......... ....-..+.++|. +++.+.. +.++ ...+.++.+|+.+.+.+
T Consensus 100 ~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~---~~~G~lyr~~p~g~~~~ 156 (307)
T COG3386 100 LLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEE---RPTGSLYRVDPDGGVVR 156 (307)
T ss_pred EeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCcccc---CCcceEEEEcCCCCEEE
Confidence 4433332111 1122234445543 5666433 1111 22346888888655555
No 106
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=35.46 E-value=3.9e+02 Score=25.20 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=55.2
Q ss_pred EEEEEECCCce-eeEecCCCcCCcCCeeeeEEEE-ECCeEEEEEecCCCCcEEEEEeCCceeeeEEEcCCCCceeEEEEE
Q 016752 228 LIVAFNLESEE-FQEVPLPHLEDKKNVLVMFVGN-FSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAY 305 (383)
Q Consensus 228 ~il~fD~~~e~-~~~i~~P~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~l~iW~l~~~W~~~~~i~~~~~~~~~~~~~ 305 (383)
.+..+|..+.+ ...|+..... ...+.. -+|+..++..... .+.++-+. +...+.+|.. +....-+++
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~------h~~~~~s~Dgr~~yv~~rdg--~vsviD~~-~~~~v~~i~~--G~~~~~i~~ 85 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAP------HAGLKFSPDGRYLYVANRDG--TVSVIDLA-TGKVVATIKV--GGNPRGIAV 85 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTE------EEEEE-TT-SSEEEEEETTS--EEEEEETT-SSSEEEEEE---SSEEEEEEE
T ss_pred EEEEEECCCCeEEEEEcCCCCc------eeEEEecCCCCEEEEEcCCC--eEEEEECC-cccEEEEEec--CCCcceEEE
Confidence 48889988754 5556643221 112232 2566555554433 66666665 2225556653 344556777
Q ss_pred EeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEE
Q 016752 306 SKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTI 347 (383)
Q Consensus 306 ~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~ 347 (383)
++||+.++... .....+..+|.+|.+..+.+..
T Consensus 86 s~DG~~~~v~n---------~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 86 SPDGKYVYVAN---------YEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp --TTTEEEEEE---------EETTEEEEEETTT--EEEEEE-
T ss_pred cCCCCEEEEEe---------cCCCceeEeccccccceeeccc
Confidence 88999888884 3577899999998877645543
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=34.89 E-value=4.3e+02 Score=25.62 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=102.9
Q ss_pred cCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEE-eccCCCeeeecC
Q 016752 125 NPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRR-IRVDFPYYILHG 203 (383)
Q Consensus 125 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~-~~~~~p~~~~~~ 203 (383)
+|-++-|...-.++... .......+.+.|... |-++... ..++++|++.+..=+. .. .+ ...
T Consensus 8 t~e~~~w~~~~~~~~~k---e~~~vssl~fsp~~P-~d~aVt~--------S~rvqly~~~~~~~~k~~s-rF----k~~ 70 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHK---EHNSVSSLCFSPKHP-YDFAVTS--------SVRVQLYSSVTRSVRKTFS-RF----KDV 70 (487)
T ss_pred Cccchhhhhhccccccc---ccCcceeEecCCCCC-CceEEec--------ccEEEEEecchhhhhhhHH-hh----ccc
Confidence 45555555443322221 134555677776432 3433333 4678999998754221 11 11 001
Q ss_pred Ccce--eeCceEEEEEecCCCCCCccEEEEEECCCcee-eEe---cCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcE
Q 016752 204 WDGT--FADGHVHWLVTNNPKDDIENLIVAFNLESEEF-QEV---PLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPV 277 (383)
Q Consensus 204 ~~~v--~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~-~~i---~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l 277 (383)
-.++ --||.|--.+.... .|-.||..+... +.+ ..|... ......++.+.+.+.+.. ..
T Consensus 71 v~s~~fR~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~~-------~~f~~~d~t~l~s~sDd~--v~ 135 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVHV-------TKFSPQDNTMLVSGSDDK--VV 135 (487)
T ss_pred eeEEEeecCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCceeE-------EEecccCCeEEEecCCCc--eE
Confidence 1222 34799887765543 489999655221 112 233221 133445666666666555 89
Q ss_pred EEEEeCCceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEE-eccCCCeee
Q 016752 278 DIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTI-HGVPQGCRD 356 (383)
Q Consensus 278 ~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~-~~~~~~~~~ 356 (383)
.+|.+.+.-+ ...+.- -..+.+-..+.+-.+-|++.- ..++.+-.||.++.+-+ .+++ +|.+ ..
T Consensus 136 k~~d~s~a~v-~~~l~~-htDYVR~g~~~~~~~hivvtG---------sYDg~vrl~DtR~~~~~-v~elnhg~p---Ve 200 (487)
T KOG0310|consen 136 KYWDLSTAYV-QAELSG-HTDYVRCGDISPANDHIVVTG---------SYDGKVRLWDTRSLTSR-VVELNHGCP---VE 200 (487)
T ss_pred EEEEcCCcEE-EEEecC-CcceeEeeccccCCCeEEEec---------CCCceEEEEEeccCCce-eEEecCCCc---ee
Confidence 9999994444 333332 115667777766445566661 46789999999998633 3443 3433 34
Q ss_pred EEEEEcc
Q 016752 357 TLVCVDS 363 (383)
Q Consensus 357 ~~~y~~s 363 (383)
...|-+|
T Consensus 201 ~vl~lps 207 (487)
T KOG0310|consen 201 SVLALPS 207 (487)
T ss_pred eEEEcCC
Confidence 5555544
No 108
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=34.03 E-value=4.9e+02 Score=26.45 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=41.5
Q ss_pred cEEEEEeCCceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEec
Q 016752 276 PVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHG 349 (383)
Q Consensus 276 ~l~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~ 349 (383)
.++||-+...|-+...|.........-++.. +|+.+|=. .-.+.+.-||+.+.+-....+..|
T Consensus 48 ~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~----------g~sg~i~EwDl~~lk~~~~~d~~g 110 (691)
T KOG2048|consen 48 NIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSS----------GLSGSITEWDLHTLKQKYNIDSNG 110 (691)
T ss_pred cEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEee----------cCCceEEEEecccCceeEEecCCC
Confidence 7999999999999988875211223334433 45666666 467788888888777663444433
No 109
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.97 E-value=4.3e+02 Score=25.28 Aligned_cols=89 Identities=16% Similarity=0.247 Sum_probs=50.9
Q ss_pred ECCeEEEEEecCCCCcEEEEEeCCceeeeEEE-cCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCC
Q 016752 261 FSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSF-HRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQ 339 (383)
Q Consensus 261 ~~G~L~~~~~~~~~~~l~iW~l~~~W~~~~~i-~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~ 339 (383)
-+|++.++....+ ++.+|-++ +|..+.+- +...+.+.---++....+..+.. | ..+.+++.||.+++
T Consensus 405 ~d~k~~LvnL~~q--ei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS----G-----SED~kvyIWhr~sg 472 (519)
T KOG0293|consen 405 KDGKLALVNLQDQ--EIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS----G-----SEDSKVYIWHRISG 472 (519)
T ss_pred CCCcEEEEEcccC--eeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEEe----c-----CCCceEEEEEccCC
Confidence 3689999987666 89999998 55543221 11122222223333322233333 1 35678999999999
Q ss_pred eEEEEEEEeccCCCeeeEEEEEccc
Q 016752 340 KAADQVTIHGVPQGCRDTLVCVDSL 364 (383)
Q Consensus 340 ~~~~~v~~~~~~~~~~~~~~y~~sl 364 (383)
++- .+ ..|.... .++..|-|--
T Consensus 473 kll-~~-LsGHs~~-vNcVswNP~~ 494 (519)
T KOG0293|consen 473 KLL-AV-LSGHSKT-VNCVSWNPAD 494 (519)
T ss_pred cee-Ee-ecCCcce-eeEEecCCCC
Confidence 987 43 4555433 4555555443
No 110
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=33.37 E-value=4.1e+02 Score=24.90 Aligned_cols=119 Identities=12% Similarity=0.116 Sum_probs=73.3
Q ss_pred eeCceEEEEEecCCCCCCccEEEEEECCCc------eeeEecCC---CcCCcCCeeeeEEEEECCeEEEEEe-cC-----
Q 016752 208 FADGHVHWLVTNNPKDDIENLIVAFNLESE------EFQEVPLP---HLEDKKNVLVMFVGNFSGCLYFSCL-CN----- 272 (383)
Q Consensus 208 ~~~G~lywl~~~~~~~~~~~~il~fD~~~e------~~~~i~~P---~~~~~~~~~~~~L~~~~G~L~~~~~-~~----- 272 (383)
-.+|..+|...++. |..+|+++. .|..+..- ....-.++..+.+...+++|+++.. ..
T Consensus 203 ~~dg~~~~vs~eG~-------V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 203 NKSGRLVWPTYTGK-------IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred cCCCcEEEEecCCe-------EEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccccc
Confidence 33799999988754 999997554 24433211 1111112201222223466776432 11
Q ss_pred CCCcEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCCC-EEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEE
Q 016752 273 YPQPVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSED-KVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQV 345 (383)
Q Consensus 273 ~~~~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~-~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v 345 (383)
.. .=+||+++ ..+..+.+|.. +.....+++++||+ .+|... .....+..+|..+.+....+
T Consensus 276 ~~-~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn---------~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 276 TA-SRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALS---------TGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CC-CCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeC---------CCCCcEEEEECcCCeEEeee
Confidence 11 23899999 99999999885 44566788889988 666662 24566999999999766344
No 111
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=31.66 E-value=4.1e+02 Score=24.38 Aligned_cols=150 Identities=14% Similarity=0.156 Sum_probs=65.9
Q ss_pred cceee-CceEEEEEecCCCCCC-ccEEEEEECC-CceeeEecCCCcCCcCCeeeeEEEEE-CCeEEEEEecCCCCcEEEE
Q 016752 205 DGTFA-DGHVHWLVTNNPKDDI-ENLIVAFNLE-SEEFQEVPLPHLEDKKNVLVMFVGNF-SGCLYFSCLCNYPQPVDIW 280 (383)
Q Consensus 205 ~~v~~-~G~lywl~~~~~~~~~-~~~il~fD~~-~e~~~~i~~P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~l~iW 280 (383)
++|.. ||.|-+-..-...... ...++.|-.. .+.|..-. .....++..+.+++. +|+|.|+..+... .-.++
T Consensus 125 SGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lsk---g~s~~gC~~psv~EWe~gkLlM~~~c~~g-~rrVY 200 (310)
T PF13859_consen 125 SGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSK---GMSPAGCSDPSVVEWEDGKLLMMTACDDG-RRRVY 200 (310)
T ss_dssp E-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S-------TT-EEEEEEEE-TTEEEEEEE-TTS----EE
T ss_pred CceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEecc---ccCCCCcceEEEEeccCCeeEEEEecccc-eEEEE
Confidence 56655 8877665432211122 2567777766 56776532 221123336789999 8999999988764 45677
Q ss_pred EeC---Cceeee-EEEcCCCC--c---eeE-EE--EEEeCCCEEEEE-ec--cCCCccccCCCcEEEEEeCCCCeEEEEE
Q 016752 281 VLK---GCWTKA-FSFHRSVG--D---YVK-AL--AYSKSEDKVLVD-KF--KYGEEDDDINRWELYWYDPQSQKAADQV 345 (383)
Q Consensus 281 ~l~---~~W~~~-~~i~~~~~--~---~~~-~~--~~~~~g~~v~l~-~~--~~~~~~~~~~~~~~~~ydl~~~~~~~~v 345 (383)
.=. .+|++- .+++-.++ + ... -. ....+|..|+|- +. ..+++ ...+.++.|=-.++.+. .|
T Consensus 201 eS~DmG~tWtea~gtlsrVw~ns~~~~~~~v~~~~ta~iegr~VmL~T~~~y~~~~~---~~~~~L~LWlTDn~r~~-~v 276 (310)
T PF13859_consen 201 ESGDMGTTWTEALGTLSRVWGNSQGVQGGFVTAGITATIEGRKVMLYTQPVYSSGNE---KEKGRLHLWLTDNNRIF-DV 276 (310)
T ss_dssp EESSTTSS-EE-TTTTTT---SST-----EEEE----EETTEEEEEEEEE---SS-T----T-B-EEEEEESSS-EE-EE
T ss_pred EEcccceehhhccCccceeeccccccCccceeeeeeeccCCcEEEEEEEeeccccCc---cccceeEEEeCCCcEEE-EE
Confidence 654 789863 34443111 1 111 11 123345555554 32 22211 24557888877777777 66
Q ss_pred E-Eec--cCCCeeeEEEEEcc
Q 016752 346 T-IHG--VPQGCRDTLVCVDS 363 (383)
Q Consensus 346 ~-~~~--~~~~~~~~~~y~~s 363 (383)
. +.+ .... ....+|+..
T Consensus 277 Gpvs~~~~~~~-~ssLLY~~~ 296 (310)
T PF13859_consen 277 GPVSMEDDDAA-ASSLLYKSG 296 (310)
T ss_dssp EE-S-TT-B----EEEEE-SS
T ss_pred ecccCCCcchh-hhhceEecC
Confidence 3 322 1222 567777653
No 112
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=31.51 E-value=3.5e+02 Score=23.55 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=87.2
Q ss_pred CCCcEEEEcCCccceee-cCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCc-eEEecc
Q 016752 117 DENGIAFWNPSTKEHLI-LPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNS-WRRIRV 194 (383)
Q Consensus 117 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~-Wr~~~~ 194 (383)
....+.++|+.+++... ++.... ...+.+++..+ +++... . ....+.+|+..++. -...+.
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~g~--~l~~~~----~--~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGPD---------PELFALHPNGK--ILYIAN----E--DDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCCC---------ccEEEECCCCC--EEEEEc----C--CCCeEEEEECCCCeEEeEeeC
Confidence 45678999999887653 433211 11355665433 222221 1 12367788887643 111110
Q ss_pred C-CCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeE-ecCCCcCCcCCeeeeEEEE-ECCeEEEEEec
Q 016752 195 D-FPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQE-VPLPHLEDKKNVLVMFVGN-FSGCLYFSCLC 271 (383)
Q Consensus 195 ~-~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~-i~~P~~~~~~~~~~~~L~~-~~G~L~~~~~~ 271 (383)
. .+.. -.+.-+|.+.+.+.... ..+..+|..+..... +..+.. .. .+.. -+|+..++...
T Consensus 114 ~~~~~~-----~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~----~~---~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 114 GVEPEG-----MAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQR----PR---FAEFTADGKELWVSSE 176 (300)
T ss_pred CCCcce-----EEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCC----cc---EEEECCCCCEEEEEcC
Confidence 0 0111 11222566655554321 135667877654422 222111 11 1222 24554444432
Q ss_pred CCCCcEEEEEeC-CceeeeEEEcC-CCC-ceeE--EEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 272 NYPQPVDIWVLK-GCWTKAFSFHR-SVG-DYVK--ALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 272 ~~~~~l~iW~l~-~~W~~~~~i~~-~~~-~~~~--~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
.. ..+.+|-++ ++..+...... ... .... -+.+.++|+.+++.. .....+..||+++.+..
T Consensus 177 ~~-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~---------~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 177 IG-GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL---------GPANRVAVVDAKTYEVL 242 (300)
T ss_pred CC-CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc---------CCCCeEEEEECCCCcEE
Confidence 22 278999887 43333222211 010 1112 245677888877762 23457999999988776
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.07 E-value=4.2e+02 Score=24.33 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=38.6
Q ss_pred cceeeCceEEEEEecCCCCCCccEEEEEECCCce-eeEecCCCcCCcCCeeeeEEEEECCeE---EEEEecCCCCcEEEE
Q 016752 205 DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEE-FQEVPLPHLEDKKNVLVMFVGNFSGCL---YFSCLCNYPQPVDIW 280 (383)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~-~~~i~~P~~~~~~~~~~~~L~~~~G~L---~~~~~~~~~~~l~iW 280 (383)
.+|.++|..---++.+ +-|-.||+.+.. ...+.-|.+. +......+.+ .++...+.. .+.||
T Consensus 47 tavAVs~~~~aSGssD------etI~IYDm~k~~qlg~ll~Hags-------itaL~F~~~~S~shLlS~sdDG-~i~iw 112 (362)
T KOG0294|consen 47 TALAVSGPYVASGSSD------ETIHIYDMRKRKQLGILLSHAGS-------ITALKFYPPLSKSHLLSGSDDG-HIIIW 112 (362)
T ss_pred eEEEecceeEeccCCC------CcEEEEeccchhhhcceeccccc-------eEEEEecCCcchhheeeecCCC-cEEEE
Confidence 6777887633333333 349999997654 3333333221 1222222222 334333332 78888
Q ss_pred EeCCceeeeEEEcC
Q 016752 281 VLKGCWTKAFSFHR 294 (383)
Q Consensus 281 ~l~~~W~~~~~i~~ 294 (383)
..+ +|..+.++-.
T Consensus 113 ~~~-~W~~~~slK~ 125 (362)
T KOG0294|consen 113 RVG-SWELLKSLKA 125 (362)
T ss_pred EcC-CeEEeeeecc
Confidence 654 6777777654
No 114
>PRK05137 tolB translocation protein TolB; Provisional
Probab=30.91 E-value=4.9e+02 Score=24.98 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=93.4
Q ss_pred CCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCC
Q 016752 118 ENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFP 197 (383)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p 197 (383)
...++++|+.|++...+...+.. .....+.|..+ .-++... ......+.+++..++.-+.+. ..+
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~--------~~~~~~SPDG~-~la~~~~-----~~g~~~Iy~~d~~~~~~~~Lt-~~~ 289 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGM--------TFAPRFSPDGR-KVVMSLS-----QGGNTDIYTMDLRSGTTTRLT-DSP 289 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCc--------ccCcEECCCCC-EEEEEEe-----cCCCceEEEEECCCCceEEcc-CCC
Confidence 35799999999988777543221 11234444332 2222221 112355666788777766654 222
Q ss_pred eeeecCCcceeeCce-EEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCc
Q 016752 198 YYILHGWDGTFADGH-VHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQP 276 (383)
Q Consensus 198 ~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~ 276 (383)
.. .......-+|. +++..... ....|..+|+.++..+.+...... .. .......+..|.++..... .
T Consensus 290 ~~--~~~~~~spDG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~~~~--~~--~~~~SpdG~~ia~~~~~~~--~ 357 (435)
T PRK05137 290 AI--DTSPSYSPDGSQIVFESDRS----GSPQLYVMNADGSNPRRISFGGGR--YS--TPVWSPRGDLIAFTKQGGG--Q 357 (435)
T ss_pred Cc--cCceeEcCCCCEEEEEECCC----CCCeEEEEECCCCCeEEeecCCCc--cc--CeEECCCCCEEEEEEcCCC--c
Confidence 10 00011122453 44443222 123588889888776665432111 00 1112222334555554333 3
Q ss_pred EEEEEeC--CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEE
Q 016752 277 VDIWVLK--GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVT 346 (383)
Q Consensus 277 l~iW~l~--~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~ 346 (383)
..||+++ +...+..+-. .......+++||+.|++.....+. .....++.+|+.+++.+ .+.
T Consensus 358 ~~i~~~d~~~~~~~~lt~~----~~~~~p~~spDG~~i~~~~~~~~~----~~~~~L~~~dl~g~~~~-~l~ 420 (435)
T PRK05137 358 FSIGVMKPDGSGERILTSG----FLVEGPTWAPNGRVIMFFRQTPGS----GGAPKLYTVDLTGRNER-EVP 420 (435)
T ss_pred eEEEEEECCCCceEeccCC----CCCCCCeECCCCCEEEEEEccCCC----CCcceEEEEECCCCceE-Ecc
Confidence 5566655 3333221111 112234567788887776310000 00147999999988877 664
No 115
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=28.68 E-value=1.8e+02 Score=25.45 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=35.5
Q ss_pred CeeEEEecCCCcEEEEcCCccceeec--CCCCCCCcCccceeEEEEeeecCCCCEEEEE
Q 016752 109 NGLIALKNDENGIAFWNPSTKEHLIL--PKFWGDLKDKVHRVVDGFGYDAVNDDYKVFR 165 (383)
Q Consensus 109 ~GLll~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~ 165 (383)
+|.|.--....++|..||.|+.-..+ .+..... ....++|-|+|..++-+||.
T Consensus 38 ~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al----~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 38 NGQLYGLGSTGRLYTINPATGAATPVGASPLTVAL----SGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred CCCEEEEeCCCcEEEEECCCCeEEEeecccccccc----cCceEEEecCcccCcEEEEc
Confidence 67665555567899999999997766 3332221 12356777788888777764
No 116
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=28.50 E-value=3.7e+02 Score=23.98 Aligned_cols=61 Identities=8% Similarity=0.105 Sum_probs=38.1
Q ss_pred eeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEec
Q 016752 208 FADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLC 271 (383)
Q Consensus 208 ~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~ 271 (383)
+.+|+||..+...........+..-+...+.|+.+.+|..... . ++-.+..++-|+|....
T Consensus 198 yY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHh--t-nlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 198 YYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHH--T-NLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---S--S----EEEETTEEEEEEE-
T ss_pred hhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccc--c-CCCceeeCCEEEEEecc
Confidence 7899999998765432333457888889999999999965422 1 34567788889888764
No 117
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=28.00 E-value=6.3e+02 Score=25.37 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=56.6
Q ss_pred CceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEeC-Cceee
Q 016752 210 DGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLK-GCWTK 288 (383)
Q Consensus 210 ~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~-~~W~~ 288 (383)
+--||..+...+ |..||++-+.|-. |......+.-.+.+.+++|-|++-. ..+ .++.|-.. .+=+.
T Consensus 145 scDly~~gsg~e-------vYRlNLEqGrfL~---P~~~~~~~lN~v~in~~hgLla~Gt-~~g--~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 145 SCDLYLVGSGSE-------VYRLNLEQGRFLN---PFETDSGELNVVSINEEHGLLACGT-EDG--VVEFWDPRDKSRVG 211 (703)
T ss_pred CccEEEeecCcc-------eEEEEcccccccc---ccccccccceeeeecCccceEEecc-cCc--eEEEecchhhhhhe
Confidence 335666655544 9999999998842 1111111110233445556554332 233 78999876 32222
Q ss_pred eEEEcCC---CC-----ceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 289 AFSFHRS---VG-----DYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 289 ~~~i~~~---~~-----~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
...+... .+ .....+.+..+|=-+-+. ...+.++.||+++.+=-
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVG----------ts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVG----------TSTGSVLIYDLRASKPL 263 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEee----------ccCCcEEEEEcccCCce
Confidence 2222211 11 123344444444333344 46788999999888754
No 118
>PRK04792 tolB translocation protein TolB; Provisional
Probab=27.61 E-value=5.7e+02 Score=24.73 Aligned_cols=187 Identities=12% Similarity=0.028 Sum_probs=95.3
Q ss_pred CcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCCceEEeccCCCe
Q 016752 119 NGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSNSWRRIRVDFPY 198 (383)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~~Wr~~~~~~p~ 198 (383)
..++++|..|++...+...+.. .....+.|..+ +-++... .+....+.+++..++..+.+. ....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~--------~~~~~wSPDG~-~La~~~~-----~~g~~~Iy~~dl~tg~~~~lt-~~~~ 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGI--------NGAPRFSPDGK-KLALVLS-----KDGQPEIYVVDIATKALTRIT-RHRA 306 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCC--------cCCeeECCCCC-EEEEEEe-----CCCCeEEEEEECCCCCeEECc-cCCC
Confidence 4699999999887766543221 11244555433 2222221 113456777888888877665 2111
Q ss_pred eeecCCcceeeCce-EEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECC-eEEEEEecCCCCc
Q 016752 199 YILHGWDGTFADGH-VHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSG-CLYFSCLCNYPQP 276 (383)
Q Consensus 199 ~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~~ 276 (383)
. .......-+|. +++..... ....|..+|+.+.+...+....... . ..... -+| .|++...... .
T Consensus 307 ~--~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~~g~~~---~-~~~~S-pDG~~l~~~~~~~g--~ 373 (448)
T PRK04792 307 I--DTEPSWHPDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTFEGEQN---L-GGSIT-PDGRSMIMVNRTNG--K 373 (448)
T ss_pred C--ccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEEecCCCCC---c-CeeEC-CCCCEEEEEEecCC--c
Confidence 0 00011122553 55544322 1245889999888877664322111 1 11122 245 4555444333 6
Q ss_pred EEEEEeC---CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEE
Q 016752 277 VDIWVLK---GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVT 346 (383)
Q Consensus 277 l~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~ 346 (383)
..||.++ +.... +... .....| .+++||+.|++.... .....++.+|...+..+ ++.
T Consensus 374 ~~I~~~dl~~g~~~~---lt~~-~~d~~p-s~spdG~~I~~~~~~-------~g~~~l~~~~~~G~~~~-~l~ 433 (448)
T PRK04792 374 FNIARQDLETGAMQV---LTST-RLDESP-SVAPNGTMVIYSTTY-------QGKQVLAAVSIDGRFKA-RLP 433 (448)
T ss_pred eEEEEEECCCCCeEE---ccCC-CCCCCc-eECCCCCEEEEEEec-------CCceEEEEEECCCCceE-ECc
Confidence 7888887 33322 1110 011123 567888888876310 12345888888776666 553
No 119
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=27.51 E-value=27 Score=30.88 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHccCC-cccceeeeecchhhhhhcCChHHHH
Q 016752 2 AGLPTDINIDILSRLS-IKCLLRFKCASKSFCSLIDSQEFIK 42 (383)
Q Consensus 2 ~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~~~~F~~ 42 (383)
.+||.+++.+||.||| -++|...+.|--.-..++++....+
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWk 244 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWK 244 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHH
Confidence 4799999999999999 6788887777665555666554433
No 120
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=27.10 E-value=2.3e+02 Score=21.29 Aligned_cols=39 Identities=18% Similarity=0.045 Sum_probs=28.1
Q ss_pred CcEEEEcCCccc-eeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEE
Q 016752 119 NGIAFWNPSTKE-HLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLV 167 (383)
Q Consensus 119 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~ 167 (383)
..++..+|.+++ |... . ....+.+..|...+.|.|....
T Consensus 16 A~v~~~~p~~~~~W~~~-----~-----~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV-----K-----GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES-----S-----SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC-----C-----eEEEEEEEEECCCCEEEEEEEE
Confidence 368999999888 8865 1 2345567788877778777765
No 121
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=26.07 E-value=7.5e+02 Score=25.58 Aligned_cols=110 Identities=11% Similarity=0.197 Sum_probs=58.6
Q ss_pred EEEEECCCceeeEecCCCcCCcCC-eeeeEEEEECCeEEEEEecCCCCcEEEEEeC-----CceeeeEEEcCCCCceeEE
Q 016752 229 IVAFNLESEEFQEVPLPHLEDKKN-VLVMFVGNFSGCLYFSCLCNYPQPVDIWVLK-----GCWTKAFSFHRSVGDYVKA 302 (383)
Q Consensus 229 il~fD~~~e~~~~i~~P~~~~~~~-~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~-----~~W~~~~~i~~~~~~~~~~ 302 (383)
|...|+.+.+.. +|....... .........++...+...... -+++|.++ .+|.-.+.=| ...
T Consensus 42 Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~--llrv~~L~tgk~irswKa~He~P------vi~ 110 (775)
T KOG0319|consen 42 VIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASRSQ--LLRVWSLPTGKLIRSWKAIHEAP------VIT 110 (775)
T ss_pred EEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeeccc--eEEEEEcccchHhHhHhhccCCC------eEE
Confidence 888899888775 444331111 001122334444443444344 79999999 5565433333 234
Q ss_pred EEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEeccCCCeeeEEEEEc
Q 016752 303 LAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHGVPQGCRDTLVCVD 362 (383)
Q Consensus 303 ~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~~~~~~~~~~~y~~ 362 (383)
+++.+.| -++.. + ..++.+-+||.+.+...|.+ .|.+.. .....|-+
T Consensus 111 ma~~~~g--~LlAt---g-----gaD~~v~VWdi~~~~~th~f--kG~gGv-Vssl~F~~ 157 (775)
T KOG0319|consen 111 MAFDPTG--TLLAT---G-----GADGRVKVWDIKNGYCTHSF--KGHGGV-VSSLLFHP 157 (775)
T ss_pred EEEcCCC--ceEEe---c-----cccceEEEEEeeCCEEEEEe--cCCCce-EEEEEeCC
Confidence 5555554 23441 1 24667888888888888643 454433 33333333
No 122
>PTZ00421 coronin; Provisional
Probab=25.39 E-value=6.7e+02 Score=24.77 Aligned_cols=201 Identities=6% Similarity=-0.022 Sum_probs=88.3
Q ss_pred Ce-eEEEecCCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCCC
Q 016752 109 NG-LIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRSN 187 (383)
Q Consensus 109 ~G-Lll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~~ 187 (383)
+| +|+....+..+.|||-.++....-...+.............+.++|..+.+ ++... ....+.||+..++
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~i-LaSgs-------~DgtVrIWDl~tg 158 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV-LASAG-------ADMVVNVWDVERG 158 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCE-EEEEe-------CCCEEEEEECCCC
Confidence 44 444444556788998765432110000000000012233456677654432 22222 2456788888876
Q ss_pred ceE-EeccCCCeeeecCCcceee--CceEEEEEecCCCCCCccEEEEEECCCcee-eEecCCCcCCcCCeeeeEEEEEC-
Q 016752 188 SWR-RIRVDFPYYILHGWDGTFA--DGHVHWLVTNNPKDDIENLIVAFNLESEEF-QEVPLPHLEDKKNVLVMFVGNFS- 262 (383)
Q Consensus 188 ~Wr-~~~~~~p~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~L~~~~- 262 (383)
.-. .+. ...... ..+.+ +|.+-..+..+ ..|-.+|+.+... ..+...... .. ...+...+
T Consensus 159 ~~~~~l~-~h~~~V----~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~~H~~~--~~--~~~~w~~~~ 223 (493)
T PTZ00421 159 KAVEVIK-CHSDQI----TSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVEAHASA--KS--QRCLWAKRK 223 (493)
T ss_pred eEEEEEc-CCCCce----EEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEecCCCC--cc--eEEEEcCCC
Confidence 421 111 110000 12222 55544433332 2488899987653 222222111 00 01111123
Q ss_pred CeEEEEEec-CCCCcEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCe
Q 016752 263 GCLYFSCLC-NYPQPVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQK 340 (383)
Q Consensus 263 G~L~~~~~~-~~~~~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~ 340 (383)
+.+..+... .....+.+|-+. ..- ....+............+..+++.+++.. ..++.+.+||+.+++
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lgg---------kgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGS---------KGEGNIRCFELMNER 293 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEE---------eCCCeEEEEEeeCCc
Confidence 333333322 123479999987 221 11122210111122233455677777762 246788889988887
Q ss_pred EE
Q 016752 341 AA 342 (383)
Q Consensus 341 ~~ 342 (383)
+.
T Consensus 294 ~~ 295 (493)
T PTZ00421 294 LT 295 (493)
T ss_pred eE
Confidence 66
No 123
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=24.89 E-value=7.5e+02 Score=25.22 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=30.7
Q ss_pred CCeEEEEEecCCCCcEEEEEeC-----C--ceeeeEEEcCCCCceeEEEEEEeCCCEEEEEe
Q 016752 262 SGCLYFSCLCNYPQPVDIWVLK-----G--CWTKAFSFHRSVGDYVKALAYSKSEDKVLVDK 316 (383)
Q Consensus 262 ~G~L~~~~~~~~~~~l~iW~l~-----~--~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~ 316 (383)
..+|.+... .. ...+|.+. + .-.++..+...-...+.+.+++++|..|.+..
T Consensus 343 ~~~L~~~w~--~h-~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st 401 (691)
T KOG2048|consen 343 ENRLLVLWK--AH-GVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST 401 (691)
T ss_pred cceEEEEec--cc-cccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee
Confidence 345555543 22 57888887 2 23333333331125677888888998888883
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=24.71 E-value=5.4e+02 Score=23.49 Aligned_cols=93 Identities=8% Similarity=0.086 Sum_probs=47.6
Q ss_pred EEEEEECCCceeeEecCCCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEeCCceeeeEEEcCCCCceeEEEEEEe
Q 016752 228 LIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSK 307 (383)
Q Consensus 228 ~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~ 307 (383)
.|-.+|+.+..=..|.-... + ...+.-.-+.=+++...-+. ++.+|-... ...+.. +...-.+.++.-
T Consensus 76 ~vr~~Dln~~~~~~igth~~----~--i~ci~~~~~~~~vIsgsWD~-~ik~wD~R~----~~~~~~-~d~~kkVy~~~v 143 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDE----G--IRCIEYSYEVGCVISGSWDK-TIKFWDPRN----KVVVGT-FDQGKKVYCMDV 143 (323)
T ss_pred eEEEEEecCCcceeeccCCC----c--eEEEEeeccCCeEEEcccCc-cEEEEeccc----cccccc-cccCceEEEEec
Confidence 48888987765554432211 1 11111121222333322222 677776652 000110 111224455555
Q ss_pred CCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 308 SEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 308 ~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
.|+.|++. +.+.+++.||+.+...-
T Consensus 144 ~g~~LvVg----------~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 144 SGNRLVVG----------TSDRKVLIYDLRNLDEP 168 (323)
T ss_pred cCCEEEEe----------ecCceEEEEEcccccch
Confidence 67888887 47889999999887654
No 125
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=24.60 E-value=2.9e+02 Score=27.03 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=44.7
Q ss_pred eEEEEEecCCCCcEEEEEeC-----CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCC
Q 016752 264 CLYFSCLCNYPQPVDIWVLK-----GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQS 338 (383)
Q Consensus 264 ~L~~~~~~~~~~~l~iW~l~-----~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~ 338 (383)
.|..+..+++ .+.+|-.+ ..|.+.|.-+. +-+++.+..+.|++.. ..++++..||..+
T Consensus 178 ~lL~~asd~G--~VtlwDv~g~sp~~~~~~~HsAP~------~gicfspsne~l~vsV---------G~Dkki~~yD~~s 240 (673)
T KOG4378|consen 178 FLLSIASDKG--AVTLWDVQGMSPIFHASEAHSAPC------RGICFSPSNEALLVSV---------GYDKKINIYDIRS 240 (673)
T ss_pred eeeEeeccCC--eEEEEeccCCCcccchhhhccCCc------CcceecCCccceEEEe---------cccceEEEeeccc
Confidence 3444444444 89999988 68888887764 3456666545566653 4678999999999
Q ss_pred CeEEEEE
Q 016752 339 QKAADQV 345 (383)
Q Consensus 339 ~~~~~~v 345 (383)
++....+
T Consensus 241 ~~s~~~l 247 (673)
T KOG4378|consen 241 QASTDRL 247 (673)
T ss_pred cccccee
Confidence 8877333
No 126
>PTZ00334 trans-sialidase; Provisional
Probab=23.97 E-value=4.6e+02 Score=27.53 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=76.3
Q ss_pred cceee-CceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcCCcCCeeeeEEEEEC-CeEEEEEecCCCCcEEEEEe
Q 016752 205 DGTFA-DGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLEDKKNVLVMFVGNFS-GCLYFSCLCNYPQPVDIWVL 282 (383)
Q Consensus 205 ~~v~~-~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~-G~L~~~~~~~~~~~l~iW~l 282 (383)
++|.. ||.|-+-..-.........++.|-..++.|..- ......++....+++.+ |+|.|+..+... .-.|+.-
T Consensus 264 SGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls---~g~s~~gC~~P~I~EWe~gkLlM~t~C~dG-~RrVYES 339 (780)
T PTZ00334 264 SGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLS---KGMSADGCSDPSVVEWKEGKLMMMTACDDG-RRRVYES 339 (780)
T ss_pred CeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEc---CCCCCCCCCCCEEEEEcCCeEEEEEEeCCC-CEEEEEE
Confidence 55544 777666543211112334567776667777532 22222222245789996 999999887664 4567776
Q ss_pred C---CceeeeE-EEcCCCC---------ceeEEEEEEeCCCEEEEE-eccCCCccccCCCcEEEEEeCCCCeEEEEEE-E
Q 016752 283 K---GCWTKAF-SFHRSVG---------DYVKALAYSKSEDKVLVD-KFKYGEEDDDINRWELYWYDPQSQKAADQVT-I 347 (383)
Q Consensus 283 ~---~~W~~~~-~i~~~~~---------~~~~~~~~~~~g~~v~l~-~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~-~ 347 (383)
. .+|++-. +++-.++ ..-..+...-+|..|+|- +..+.+++ ....+.++.|=..++.+. .|. +
T Consensus 340 ~DmG~tWtEAlGTLsrVW~ns~~~~~~~~~~~~iTatIe~r~VML~T~p~y~~~~-~~~~~~L~LWlTDn~ri~-~vGpv 417 (780)
T PTZ00334 340 GDKGDSWTEALGTLSRVWGNKQKGNEKGVGSGFSTATIENRDVMLVTLPVYSNRK-GKEKGELHLWLTDNTHIV-DIGPV 417 (780)
T ss_pred CCCCCChhhCCCccceeeccCCCCCCCCCCCccEEEEECCCEEEEEecccccCcc-cccccceeEEEecCCeEE-Eeccc
Confidence 4 7787542 4432111 001111112234444544 32221111 012446788877777777 553 3
Q ss_pred eccC-CCeeeEEEEE
Q 016752 348 HGVP-QGCRDTLVCV 361 (383)
Q Consensus 348 ~~~~-~~~~~~~~y~ 361 (383)
.+.. .. ....+|+
T Consensus 418 s~d~~~~-aSsLLY~ 431 (780)
T PTZ00334 418 SGDDDAA-ASSLLYK 431 (780)
T ss_pred cccccch-hhhheee
Confidence 3221 22 5677887
No 127
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=23.93 E-value=2.8e+02 Score=26.16 Aligned_cols=44 Identities=20% Similarity=0.455 Sum_probs=28.2
Q ss_pred cEEEEEeC-----------CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 276 PVDIWVLK-----------GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 276 ~l~iW~l~-----------~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
++++|-++ ..|++. ++.++||+.|--. ..++.+..||+++++-.
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlc-------------vawsPDgk~iASG----------~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLC-------------VAWSPDGKKIASG----------SKDGSIRLWDPKTGQQI 192 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEE-------------EEECCCcchhhcc----------ccCCeEEEecCCCCCcc
Confidence 89999887 344433 3444576654444 36677888888777644
No 128
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.92 E-value=6.7e+02 Score=25.99 Aligned_cols=97 Identities=20% Similarity=0.353 Sum_probs=61.9
Q ss_pred CcCeeEEEecCCCcEEEEcCCccceeecCCCCCCCcCccceeEEEEeeecCCCCEEEEEEEEEeecCCcccEEEEEEcCC
Q 016752 107 SCNGLIALKNDENGIAFWNPSTKEHLILPKFWGDLKDKVHRVVDGFGYDAVNDDYKVFRLVQFVRENVEYTEVSVYSLRS 186 (383)
Q Consensus 107 s~~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~~ 186 (383)
|.|++||-...++++=+|.|-++++..+-.-. .......|+|..+.|-|=.-. ..++.+.+..+
T Consensus 378 SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn--------dfVTcVaFnPvDDryFiSGSL--------D~KvRiWsI~d 441 (712)
T KOG0283|consen 378 SKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN--------DFVTCVAFNPVDDRYFISGSL--------DGKVRLWSISD 441 (712)
T ss_pred ccCCeeEeccccccEEeecCCCcceeeEEecC--------CeeEEEEecccCCCcEeeccc--------ccceEEeecCc
Confidence 67999998888889999999999988665432 244568889988887654432 24566666666
Q ss_pred C---ceEEeccCCCeeeecCC--cce---eeCceEEEEEecC
Q 016752 187 N---SWRRIRVDFPYYILHGW--DGT---FADGHVHWLVTNN 220 (383)
Q Consensus 187 ~---~Wr~~~~~~p~~~~~~~--~~v---~~~G~lywl~~~~ 220 (383)
. -|-.+. ++-....+.. .++ .++|.+++....+
T Consensus 442 ~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 442 KKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred CeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence 4 476655 3322222221 222 4577777665554
No 129
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.91 E-value=5.1e+02 Score=23.26 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=51.0
Q ss_pred EEEEEECCCc--eeeEecCCCc-C---CcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEeC-CceeeeEEEcCCCCcee
Q 016752 228 LIVAFNLESE--EFQEVPLPHL-E---DKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLK-GCWTKAFSFHRSVGDYV 300 (383)
Q Consensus 228 ~il~fD~~~e--~~~~i~~P~~-~---~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~-~~W~~~~~i~~~~~~~~ 300 (383)
.+.+.|+.++ .|..|.--.- . -... ...++..+|.|++++...+. .+|... .+=+|.
T Consensus 34 ~~~avd~~sG~~~We~ilg~RiE~sa~vvgd--fVV~GCy~g~lYfl~~~tGs---~~w~f~~~~~vk~----------- 97 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAILGVRIECSAIVVGD--FVVLGCYSGGLYFLCVKTGS---QIWNFVILETVKV----------- 97 (354)
T ss_pred eEEEecCCCCcEEeehhhCceeeeeeEEECC--EEEEEEccCcEEEEEecchh---heeeeeehhhhcc-----------
Confidence 3777777654 4554421110 0 0011 24567788999999875442 455554 111211
Q ss_pred EEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEec
Q 016752 301 KALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIHG 349 (383)
Q Consensus 301 ~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~~ 349 (383)
++.. ..+++.|+.. ..++.++..|.+++.-..+.+.-|
T Consensus 98 ~a~~-d~~~glIycg----------shd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 98 RAQC-DFDGGLIYCG----------SHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ceEE-cCCCceEEEe----------cCCCcEEEecccccceEEecccCC
Confidence 1222 2256677776 466778888888877654444433
No 130
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.24 E-value=2.7e+02 Score=28.66 Aligned_cols=56 Identities=18% Similarity=0.352 Sum_probs=42.5
Q ss_pred cEEEEEeC----CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEEEe
Q 016752 276 PVDIWVLK----GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVTIH 348 (383)
Q Consensus 276 ~l~iW~l~----~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~~~ 348 (383)
.++||-.. -.|..+.. .+..+++.++|+..++. ...+...+|+.+..+++....|.
T Consensus 433 KvRiWsI~d~~Vv~W~Dl~~-------lITAvcy~PdGk~avIG----------t~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 433 KVRLWSISDKKVVDWNDLRD-------LITAVCYSPDGKGAVIG----------TFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred ceEEeecCcCeeEeehhhhh-------hheeEEeccCCceEEEE----------EeccEEEEEEccCCeEEEeeeEe
Confidence 78899875 56775552 34478888999888888 36778999999999998665554
No 131
>PTZ00420 coronin; Provisional
Probab=21.85 E-value=7.2e+02 Score=25.10 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCCCcEEEEEeC-CceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCe
Q 016752 262 SGCLYFSCLCNYPQPVDIWVLK-GCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQK 340 (383)
Q Consensus 262 ~G~L~~~~~~~~~~~l~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~ 340 (383)
++...++...... .+.||-++ +. ....+. .+..+.-+.++.+|..+... ..++.+..||+++++
T Consensus 136 ~g~~iLaSgS~Dg-tIrIWDl~tg~--~~~~i~--~~~~V~SlswspdG~lLat~----------s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 136 MNYYIMCSSGFDS-FVNIWDIENEK--RAFQIN--MPKKLSSLKWNIKGNLLSGT----------CVGKHMHIIDPRKQE 200 (568)
T ss_pred CCCeEEEEEeCCC-eEEEEECCCCc--EEEEEe--cCCcEEEEEECCCCCEEEEE----------ecCCEEEEEECCCCc
Q ss_pred E
Q 016752 341 A 341 (383)
Q Consensus 341 ~ 341 (383)
.
T Consensus 201 ~ 201 (568)
T PTZ00420 201 I 201 (568)
T ss_pred E
No 132
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=21.84 E-value=7.7e+02 Score=24.20 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=81.1
Q ss_pred ccEEEEEEcCCCceEEeccCCCeeeecC-----------CcceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecC
Q 016752 176 YTEVSVYSLRSNSWRRIRVDFPYYILHG-----------WDGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPL 244 (383)
Q Consensus 176 ~~~~~vyss~~~~Wr~~~~~~p~~~~~~-----------~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~ 244 (383)
...+.+|+..+++=+.++..+|..-... ..-..++|-++-+...+. ...++....---.+.-
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGk-------aFi~~~~~~~~iqv~~ 358 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGK-------AFIMRPWDGYSIQVGK 358 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCc-------EEEECCCCCeeEEcCC
Confidence 4457788888888887775555431100 123356787777776653 5555554443332332
Q ss_pred CCcCCcCCeeeeEEEEECCeEEEEEecCCCCcEEEEEeCCceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccc
Q 016752 245 PHLEDKKNVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDD 324 (383)
Q Consensus 245 P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~ 324 (383)
+... . ..++..... .++..+.+...+.|.-.++. ++.++...++ .+-.+++.++|+.+++.
T Consensus 359 ~~~V---r--Y~r~~~~~e--~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg-~I~av~vs~dGK~~vva--------- 419 (668)
T COG4946 359 KGGV---R--YRRIQVDPE--GDVIGTNDGDKLGIYDKDGG--EVKRIEKDLG-NIEAVKVSPDGKKVVVA--------- 419 (668)
T ss_pred CCce---E--EEEEccCCc--ceEEeccCCceEEEEecCCc--eEEEeeCCcc-ceEEEEEcCCCcEEEEE---------
Confidence 2222 1 122333333 23333333336777777632 2333433222 24467778899988888
Q ss_pred cCCCcEEEEEeCCCCeEEEEEE
Q 016752 325 DINRWELYWYDPQSQKAADQVT 346 (383)
Q Consensus 325 ~~~~~~~~~ydl~~~~~~~~v~ 346 (383)
....++.++|+++++.+ .++
T Consensus 420 -Ndr~el~vididngnv~-~id 439 (668)
T COG4946 420 -NDRFELWVIDIDNGNVR-LID 439 (668)
T ss_pred -cCceEEEEEEecCCCee-Eec
Confidence 36779999999999998 663
No 133
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=21.81 E-value=8.3e+02 Score=24.59 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=35.5
Q ss_pred EEcCCCceEEeccCCC-eeeec-CC----cceeeCceEEEEEecCCCCCCccEEEEEECCCceeeEecCCCcC
Q 016752 182 YSLRSNSWRRIRVDFP-YYILH-GW----DGTFADGHVHWLVTNNPKDDIENLIVAFNLESEEFQEVPLPHLE 248 (383)
Q Consensus 182 yss~~~~Wr~~~~~~p-~~~~~-~~----~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 248 (383)
-.....+|+.+. ..+ ..... .. =+|.-||++++- ..|-.+|+..+.|..|+.|...
T Consensus 213 ~~P~GraW~~i~-~~t~L~qISagPtg~VwAvt~nG~vf~R----------~GVsRqNp~GdsWkdI~tP~~a 274 (705)
T KOG3669|consen 213 DRPCGRAWKVIC-PYTDLSQISAGPTGVVWAVTENGAVFYR----------EGVSRQNPEGDSWKDIVTPRQA 274 (705)
T ss_pred CCCCCceeeecC-CCCccceEeecCcceEEEEeeCCcEEEE----------ecccccCCCCchhhhccCcccc
Confidence 344567898876 333 22111 11 234568877663 2488899999999988888654
No 134
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.50 E-value=5.4e+02 Score=22.34 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=42.0
Q ss_pred eeEEEEECCeEEEEEecCCCCcEEEEEeC-CceeeeEEEcCC-----CC-ceeEEEEEEeCCCEEEEEeccCCCccccCC
Q 016752 255 VMFVGNFSGCLYFSCLCNYPQPVDIWVLK-GCWTKAFSFHRS-----VG-DYVKALAYSKSEDKVLVDKFKYGEEDDDIN 327 (383)
Q Consensus 255 ~~~L~~~~G~L~~~~~~~~~~~l~iW~l~-~~W~~~~~i~~~-----~~-~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~ 327 (383)
.+.|-.++|-.++..+... ++..|-|. .+-+. +++.. ++ .....+++.+.|. ++..- ..
T Consensus 186 ilalyswn~~m~~sgsqdk--tirfwdlrv~~~v~--~l~~~~~~~glessavaav~vdpsgr-ll~sg---------~~ 251 (350)
T KOG0641|consen 186 ILALYSWNGAMFASGSQDK--TIRFWDLRVNSCVN--TLDNDFHDGGLESSAVAAVAVDPSGR-LLASG---------HA 251 (350)
T ss_pred EEEEEEecCcEEEccCCCc--eEEEEeeeccceee--eccCcccCCCcccceeEEEEECCCcc-eeeec---------cC
Confidence 3456677887776665555 89999998 54332 33331 11 3455566666654 34431 23
Q ss_pred CcEEEEEeCCCCeEE
Q 016752 328 RWELYWYDPQSQKAA 342 (383)
Q Consensus 328 ~~~~~~ydl~~~~~~ 342 (383)
+.....||.+.+++.
T Consensus 252 dssc~lydirg~r~i 266 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMI 266 (350)
T ss_pred CCceEEEEeeCCcee
Confidence 445666666666554
No 135
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=21.41 E-value=74 Score=31.61 Aligned_cols=32 Identities=9% Similarity=0.424 Sum_probs=25.4
Q ss_pred ceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCC
Q 016752 298 DYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQ 339 (383)
Q Consensus 298 ~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~ 339 (383)
..+.-++++++||-|++. ..++++++||+.-.
T Consensus 608 kwiS~msihp~GDnli~g----------s~d~k~~WfDldls 639 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILG----------SYDKKMCWFDLDLS 639 (733)
T ss_pred eeeeeeeecCCCCeEEEe----------cCCCeeEEEEcccC
Confidence 346678888889988888 47889999998654
No 136
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=20.85 E-value=6.1e+02 Score=22.68 Aligned_cols=144 Identities=11% Similarity=0.108 Sum_probs=78.4
Q ss_pred CcccEEEEEEcCCCceEEeccCCCeeeecCCcceeeCceEEEEEecCCCCCCccEEEEEECCCc-eeeEecCCCcCCcCC
Q 016752 174 VEYTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPKDDIENLIVAFNLESE-EFQEVPLPHLEDKKN 252 (383)
Q Consensus 174 ~~~~~~~vyss~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~il~fD~~~e-~~~~i~~P~~~~~~~ 252 (383)
...+.+..|+..++.=.... .+|... .......+++.+|-++-... ....||..+= .-..++.|. ++
T Consensus 65 yG~S~l~~~d~~tg~~~~~~-~l~~~~-FgEGit~~~d~l~qLTWk~~------~~f~yd~~tl~~~~~~~y~~----EG 132 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSV-PLPPRY-FGEGITILGDKLYQLTWKEG------TGFVYDPNTLKKIGTFPYPG----EG 132 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEE-E-TTT---EEEEEEETTEEEEEESSSS------EEEEEETTTTEEEEEEE-SS----S-
T ss_pred CCcEEEEEEECCCCcEEEEE-ECCccc-cceeEEEECCEEEEEEecCC------eEEEEccccceEEEEEecCC----cc
Confidence 35678889999998643333 344322 12234577999999987654 4899999752 333445552 34
Q ss_pred eeeeEEEEECCeEEEEEecCCCCcEEEEEeC-CceeeeEEEcCCCC----ceeEEEEEEeCCCEEEEEeccCCCccccCC
Q 016752 253 VLVMFVGNFSGCLYFSCLCNYPQPVDIWVLK-GCWTKAFSFHRSVG----DYVKALAYSKSEDKVLVDKFKYGEEDDDIN 327 (383)
Q Consensus 253 ~~~~~L~~~~G~L~~~~~~~~~~~l~iW~l~-~~W~~~~~i~~~~~----~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~ 327 (383)
+ -|+..+..|.|... +=.|+.++ .......+|..... ....-+-+. + +.|+-.. ..
T Consensus 133 W---GLt~dg~~Li~SDG-----S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~-G~IyANV---------W~ 193 (264)
T PF05096_consen 133 W---GLTSDGKRLIMSDG-----SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N-GKIYANV---------WQ 193 (264)
T ss_dssp ----EEEECSSCEEEE-S-----SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T-TEEEEEE---------TT
T ss_pred e---EEEcCCCEEEEECC-----ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c-CEEEEEe---------CC
Confidence 4 34444455555443 23677777 66667777765211 111112221 3 4677764 45
Q ss_pred CcEEEEEeCCCCeEEEEEEEe
Q 016752 328 RWELYWYDPQSQKAADQVTIH 348 (383)
Q Consensus 328 ~~~~~~ydl~~~~~~~~v~~~ 348 (383)
...++..|++|+++...++..
T Consensus 194 td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-H
T ss_pred CCeEEEEeCCCCeEEEEEEhh
Confidence 678999999999988444443
No 137
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.82 E-value=4.2e+02 Score=24.30 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=39.7
Q ss_pred CcEEEEEeCCceeeeEEEcCCCCceeEEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEEEEEE
Q 016752 275 QPVDIWVLKGCWTKAFSFHRSVGDYVKALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAADQVT 346 (383)
Q Consensus 275 ~~l~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~~~v~ 346 (383)
.++.||.|+..=+-+.+|... ....-+++...+.+|-+- +.++.+-.||+..+.+- ++.
T Consensus 378 rTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiP----------hDNRqvRlfDlnG~Rla-RlP 436 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIP----------HDNRQVRLFDLNGNRLA-RLP 436 (481)
T ss_pred ceEEEeeeccccCcceeeecC--CccceeEeecCCceEEec----------cCCceEEEEecCCCccc-cCC
Confidence 389999998433444455431 123345666555577776 57889999999999988 763
No 138
>PF15408 PH_7: Pleckstrin homology domain
Probab=20.60 E-value=21 Score=25.41 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=17.7
Q ss_pred ccceeeeecchhhhhhcCChHHH
Q 016752 19 KCLLRFKCASKSFCSLIDSQEFI 41 (383)
Q Consensus 19 ~sl~r~r~VcK~W~~li~~~~F~ 41 (383)
+.++.-+-|||.|...+.+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 34444566999999999999984
No 139
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=20.46 E-value=2.7e+02 Score=27.03 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=24.4
Q ss_pred EEEEEEeCCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 301 KALAYSKSEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 301 ~~~~~~~~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
.-+.+++||+.|+-. ..+++++.||-+|-++-
T Consensus 436 ~~v~fSpDG~~l~SG----------dsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSG----------DSDGKVNFWDWKTTKLV 467 (503)
T ss_pred eeEEEcCCCCeEEee----------cCCccEEEeechhhhhh
Confidence 335667888876666 47889999999987766
No 140
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=20.28 E-value=2.1e+02 Score=23.82 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCCEEEEEeccCCCccccCCCcEEEEEeCCCCeEE
Q 016752 308 SEDKVLVDKFKYGEEDDDINRWELYWYDPQSQKAA 342 (383)
Q Consensus 308 ~g~~v~l~~~~~~~~~~~~~~~~~~~ydl~~~~~~ 342 (383)
+.+.+.+.++.+. ....+++++|++++++-
T Consensus 33 ~~~~l~iIDfs~p-----S~~~R~~v~Dl~~~~~l 62 (176)
T PF13645_consen 33 NKDILTIIDFSKP-----SGEKRFFVIDLKKGKLL 62 (176)
T ss_pred CCCeEEEEECCCC-----CCCCeEEEEECCCCEEE
Confidence 4478888877654 35678999999999987
No 141
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=2.6e+02 Score=26.12 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=31.6
Q ss_pred ccEEEEEEcCCCceEEeccCCCeeeecCCcceeeCceEEEEEecCC
Q 016752 176 YTEVSVYSLRSNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNP 221 (383)
Q Consensus 176 ~~~~~vyss~~~~Wr~~~~~~p~~~~~~~~~v~~~G~lywl~~~~~ 221 (383)
...-+||-...++|+.+. .+|..+.+ .-++..++.+|.+.++..
T Consensus 317 ~w~~~Vy~~d~g~Wk~~G-eLp~~l~Y-G~s~~~nn~vl~IGGE~~ 360 (381)
T COG3055 317 SWNSEVYIFDNGSWKIVG-ELPQGLAY-GVSLSYNNKVLLIGGETS 360 (381)
T ss_pred hhhceEEEEcCCceeeec-ccCCCccc-eEEEecCCcEEEEccccC
Confidence 345578888899999998 88874332 245566888898887754
Done!