BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016753
         (383 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LN1|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer
           Protein In Complex With Dilinoleoylphosphatidylcholine
          Length = 214

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 121 DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWI 180
           D KTG  +Y+   V ED +P L+ D + D  +R +WD    Y   L E    G  V+ W 
Sbjct: 46  DKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWE 102

Query: 181 RKFPFFCSDREYIIGRR 197
            K+PF  S+R+Y+  R+
Sbjct: 103 VKYPFPMSNRDYVYLRQ 119


>pdb|1LN2|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer
           Protein In Complex With Dilinoleoylphosphatidylcholine
           (Seleno-Met Protein)
 pdb|1LN2|B Chain B, Crystal Structure Of Human Phosphatidylcholine Transfer
           Protein In Complex With Dilinoleoylphosphatidylcholine
           (Seleno-Met Protein)
 pdb|1LN3|A Chain A, Structure Of Human Phosphatidylcholine Transfer Protein In
           Complex With Palmitoyl-Linoleoyl Phosphatidylcholine
           (Seleno-Met Protein)
 pdb|1LN3|B Chain B, Structure Of Human Phosphatidylcholine Transfer Protein In
           Complex With Palmitoyl-Linoleoyl Phosphatidylcholine
           (Seleno-Met Protein)
          Length = 214

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 121 DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWI 180
           D KTG  +Y+   V ED +P L+ D + D  +R +WD    Y   L E    G  V+ W 
Sbjct: 46  DKKTGLYEYKVFGVLEDCSPTLLADIYXDSDYRKQWDQ---YVKELYEQECNGETVVYWE 102

Query: 181 RKFPFFCSDREYIIGRR 197
            K+PF  S+R+Y+  R+
Sbjct: 103 VKYPFPXSNRDYVYLRQ 119


>pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver
           Somniferum
          Length = 311

 Score = 32.7 bits (73), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 63  PEFDNSCT------SELNHGQSNVVTEEDLEHLWRLAEMKDGGPT 101
           P+F  +C       +E+N+G  N   EE  EH+ R+A   D GP+
Sbjct: 255 PKFQVNCVCPGLVKTEMNYGIGNYTAEEGAEHVVRIALFPDDGPS 299


>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
          Length = 449

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 229 CYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKI 282
            +    +RP     G G +   E ++ H  D  + + +A  G     WGA KK+
Sbjct: 198 SFGGSLVRP--EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKL 249


>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
 pdb|1HRD|B Chain B, Glutamate Dehydrogenase
 pdb|1HRD|C Chain C, Glutamate Dehydrogenase
 pdb|1BGV|A Chain A, Glutamate Dehydrogenase
          Length = 449

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 229 CYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKI 282
            +    +RP     G G +   E ++ H  D  + + +A  G     WGA KK+
Sbjct: 198 SFGGSLVRP--EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKL 249


>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
          Length = 449

 Score = 28.9 bits (63), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 229 CYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKI 282
            +    +RP     G G +   E ++ H  D  + + +A  G     WGA KK+
Sbjct: 198 SFGGSLVRP--EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKL 249


>pdb|3D4T|A Chain A, Crystal Structure Of The Periplasmic Thioredoxin Soxs
          From Paracoccus Pantotrophus (Oxidized Form)
          Length = 116

 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 21 GWLWKPKWAISRTKRHKLCESESSTPTQRLQIEKPRPP 58
          G L+  +W      ++ L +   + P QRLQ+  P PP
Sbjct: 29 GCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPP 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,370,568
Number of Sequences: 62578
Number of extensions: 534035
Number of successful extensions: 1085
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 7
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)