BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016753
(383 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R1R3|STAR7_MOUSE StAR-related lipid transfer protein 7, mitochondrial OS=Mus
musculus GN=Stard7 PE=2 SV=2
Length = 373
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 96 KDGGPTWIKMMDRSTETMSYQAWGRDPKTGPP--QYRTSTVYEDVTPELVRDFFWDDVFR 153
KD W +MD+ ++ W R P TG QYR Y DVTP + D +R
Sbjct: 138 KDKEEPWEMVMDKK----HFKLW-RRPITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYR 192
Query: 154 SKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRR--IWKAGTDYYCVTKG 211
KWD ++ +E +G+ V+ W+ FP+ R+Y+ RR + + V++
Sbjct: 193 KKWDALVIKLEVIERDAVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNVMVLVSRA 252
Query: 212 VPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNG 245
V SVP + RV S IRP +S NG
Sbjct: 253 VEHPSVPESPEFVRVRSYESQMVIRPHKSFDENG 286
>sp|Q9NQZ5|STAR7_HUMAN StAR-related lipid transfer protein 7, mitochondrial OS=Homo
sapiens GN=STARD7 PE=1 SV=2
Length = 370
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 102 WIKMMDRSTETMSYQAWGRDPKTGPP--QYRTSTVYEDVTPELVRDFFWDDVFRSKWDDM 159
W +MD+ ++ W R P TG QYR Y DVTP + D +R KWD +
Sbjct: 141 WEMVMDKK----HFKLW-RRPITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRKKWDAL 195
Query: 160 LAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRR--IWKAGTDYYCVTKGVPCNSV 217
+ +E +G+ V+ W+ FP+ R+Y+ RR + + V++ V SV
Sbjct: 196 VIKLEVIERDVVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNMMVLVSRAVEHPSV 255
Query: 218 PRRDKPRRVDLCYSSWCIRPVESRRGNG 245
P + RV S IRP +S NG
Sbjct: 256 PESPEFVRVRSYESQMVIRPHKSFDENG 283
>sp|Q9UKL6|PPCT_HUMAN Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1
SV=1
Length = 214
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 121 DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWI 180
D KTG +Y+ V ED +P L+ D + D +R +WD Y L E G V+ W
Sbjct: 46 DKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWE 102
Query: 181 RKFPFFCSDREYIIGRR 197
K+PF S+R+Y+ R+
Sbjct: 103 VKYPFPMSNRDYVYLRQ 119
>sp|P53809|PPCT_RAT Phosphatidylcholine transfer protein OS=Rattus norvegicus GN=Pctp
PE=2 SV=2
Length = 214
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 16/178 (8%)
Query: 121 DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWI 180
D TG +Y+ V E P L+ D + D +R KWD Y L E G MV W
Sbjct: 46 DQSTGLYEYKVFGVLESCIPSLLADVYMDLDYRKKWDQ---YVKELYEKSFDGQMVAYWE 102
Query: 181 RKFPFFCSDREYIIGRRIWKAGTD----YYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIR 236
K+PF S+R+Y+ R+ D Y + + + P + RV S I
Sbjct: 103 VKYPFPLSNRDYVYTRQRRDLDVDGRKIYVVLAQNISVPQFPEKSGVIRVKQYKQSLAIE 162
Query: 237 PVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQKQ 292
+ ++G+ V +++ ++ G IP + + G+ +K + + Y K+
Sbjct: 163 S-DGKKGS------RVFMYYFDNPGGQIPSWLINWAAKNGVPSFLKDMVKACQNYHKK 213
>sp|P02720|PPCT_BOVIN Phosphatidylcholine transfer protein OS=Bos taurus GN=PCTP PE=1
SV=1
Length = 213
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 121 DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWI 180
D +TG Y+ V ED P+L+ D + D +R +WD Y L E +G V+ W
Sbjct: 46 DQQTGLYAYKVFGVLEDCLPDLLADVYMDLAYRKQWDQ---YVKELYEKECSGETVVYWQ 102
Query: 181 RKFPFFCSDREYIIGRR 197
K+PF S+R+Y+ R+
Sbjct: 103 VKYPFPMSNRDYVYVRQ 119
>sp|P53808|PPCT_MOUSE Phosphatidylcholine transfer protein OS=Mus musculus GN=Pctp PE=1
SV=2
Length = 214
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 16/178 (8%)
Query: 121 DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWI 180
D +G +Y+ V E +P L+ D + D +R +WD Y L E + MV W
Sbjct: 46 DQPSGLYEYKVFGVLEGCSPALLTDVYMDLDYRKQWDQ---YVKELYEKESDEQMVAYWE 102
Query: 181 RKFPFFCSDREYIIGRRIWKAGTD----YYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIR 236
K+PF S+R+Y+ R+ D Y + + + P + RV S I
Sbjct: 103 VKYPFPLSNRDYVYTRQRRDLDVDRRKIYVVLAQSISAPQFPEKSGVIRVKQYKQSLAIE 162
Query: 237 PVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQKQ 292
+ ++G+ V +++ ++ G IP + + G+ +K + + Y K+
Sbjct: 163 S-DGKKGS------RVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMVKACQNYHKK 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,239,643
Number of Sequences: 539616
Number of extensions: 6746541
Number of successful extensions: 15259
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15241
Number of HSP's gapped (non-prelim): 16
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)