Query 016753
Match_columns 383
No_of_seqs 171 out of 466
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2761 START domain-containin 100.0 1.6E-52 3.5E-57 388.5 22.9 210 78-293 5-219 (219)
2 cd08870 START_STARD2_7-like Li 100.0 4.6E-47 9.9E-52 353.4 26.7 204 80-289 2-209 (209)
3 cd08910 START_STARD2-like Lipi 100.0 3.9E-44 8.5E-49 334.1 24.4 196 80-289 4-207 (207)
4 cd08911 START_STARD7-like Lipi 100.0 1.4E-43 3.1E-48 330.0 24.8 184 98-289 19-207 (207)
5 cd08871 START_STARD10-like Lip 100.0 3.8E-40 8.2E-45 308.9 27.1 207 78-299 4-213 (222)
6 cd08872 START_STARD11-like Cer 100.0 1.1E-36 2.4E-41 289.3 24.8 207 82-300 8-234 (235)
7 cd08868 START_STARD1_3_like Ch 100.0 3.6E-33 7.7E-38 259.3 22.6 191 83-288 11-207 (208)
8 cd08906 START_STARD3-like Chol 100.0 1.9E-32 4.1E-37 256.0 22.5 190 83-287 11-207 (209)
9 smart00234 START in StAR and p 100.0 2.7E-32 5.8E-37 250.5 23.1 193 84-290 6-204 (206)
10 cd08905 START_STARD1-like Chol 100.0 2E-31 4.4E-36 248.8 21.2 192 81-287 9-207 (209)
11 cd08904 START_STARD6-like Lipi 100.0 3.5E-30 7.5E-35 240.2 24.2 191 82-286 7-203 (204)
12 cd08874 START_STARD9-like C-te 100.0 5.5E-30 1.2E-34 239.1 22.2 166 100-276 22-194 (205)
13 cd08903 START_STARD5-like Lipi 100.0 1.8E-29 4E-34 235.5 24.9 190 83-288 8-207 (208)
14 PF01852 START: START domain; 100.0 2.6E-29 5.7E-34 230.0 24.4 191 86-291 7-205 (206)
15 cd08914 START_STARD15-like Lip 100.0 1.1E-29 2.5E-34 240.8 20.9 182 81-281 41-228 (236)
16 cd08867 START_STARD4_5_6-like 100.0 5.8E-29 1.3E-33 230.8 24.0 189 84-286 9-205 (206)
17 cd08869 START_RhoGAP C-termina 100.0 5.6E-29 1.2E-33 230.3 21.4 182 86-287 7-195 (197)
18 cd08877 START_2 Uncharacterize 100.0 7.8E-29 1.7E-33 231.3 21.9 188 85-288 10-214 (215)
19 cd08913 START_STARD14-like Lip 100.0 6.4E-29 1.4E-33 236.8 21.1 171 89-277 51-227 (240)
20 cd00177 START Lipid-binding ST 100.0 3.6E-28 7.8E-33 217.6 24.4 183 87-285 5-191 (193)
21 cd08873 START_STARD14_15-like 100.0 5.6E-29 1.2E-33 236.3 19.3 183 80-280 39-226 (235)
22 cd08876 START_1 Uncharacterize 100.0 7.5E-28 1.6E-32 219.8 22.7 173 100-286 17-194 (195)
23 cd08902 START_STARD4-like Lipi 99.9 2.7E-26 5.9E-31 212.2 18.8 174 100-286 23-201 (202)
24 cd08908 START_STARD12-like C-t 99.9 4.7E-25 1E-29 205.7 22.1 168 101-286 28-201 (204)
25 cd08907 START_STARD8-like C-te 99.9 4.1E-25 9E-30 204.8 21.1 184 84-286 13-202 (205)
26 cd08909 START_STARD13-like C-t 99.9 1E-23 2.2E-28 196.8 22.8 169 101-286 28-202 (205)
27 PLN00188 enhanced disease resi 99.9 1.5E-21 3.3E-26 206.8 19.6 197 99-306 197-406 (719)
28 KOG1739 Serine/threonine prote 99.8 6.1E-20 1.3E-24 185.6 13.0 193 99-300 402-610 (611)
29 cd08864 SRPBCC_DUF3074 DUF3074 99.6 1.3E-14 2.8E-19 136.1 15.2 136 140-280 50-200 (208)
30 cd08875 START_ArGLABRA2_like C 99.2 5.4E-10 1.2E-14 106.2 17.4 194 83-286 9-228 (229)
31 cd07813 COQ10p_like Coenzyme Q 99.1 1.4E-09 3.1E-14 93.5 13.6 134 130-288 2-137 (138)
32 PF11274 DUF3074: Protein of u 98.9 5.6E-08 1.2E-12 89.8 17.1 139 137-279 13-177 (184)
33 cd08866 SRPBCC_11 Ligand-bindi 98.9 1E-07 2.2E-12 81.9 17.1 132 130-287 2-143 (144)
34 cd07819 SRPBCC_2 Ligand-bindin 98.8 5.4E-07 1.2E-11 76.3 16.1 134 128-285 3-139 (140)
35 cd05018 CoxG Carbon monoxide d 98.6 2.1E-06 4.7E-11 73.0 15.4 135 128-286 2-143 (144)
36 PF03364 Polyketide_cyc: Polyk 98.3 6.6E-05 1.4E-09 63.4 16.1 127 137-283 2-130 (130)
37 cd07821 PYR_PYL_RCAR_like Pyra 98.0 0.00029 6.3E-09 59.1 15.2 133 128-286 2-139 (140)
38 PRK10724 hypothetical protein; 97.9 0.00043 9.3E-09 62.4 15.1 137 126-287 14-152 (158)
39 cd07817 SRPBCC_8 Ligand-bindin 97.9 0.00072 1.6E-08 57.1 14.7 129 130-286 3-137 (139)
40 cd08861 OtcD1_ARO-CYC_like N-t 97.5 0.006 1.3E-07 52.1 14.7 129 132-286 4-140 (142)
41 cd08860 TcmN_ARO-CYC_like N-te 97.4 0.015 3.2E-07 51.6 16.2 135 132-288 6-144 (146)
42 PF10604 Polyketide_cyc2: Poly 97.1 0.098 2.1E-06 43.7 18.0 132 128-286 3-138 (139)
43 cd07812 SRPBCC START/RHO_alpha 97.1 0.045 9.8E-07 44.0 15.0 131 130-284 2-139 (141)
44 cd07824 SRPBCC_6 Ligand-bindin 96.7 0.11 2.4E-06 45.1 15.2 132 128-284 2-144 (146)
45 cd08865 SRPBCC_10 Ligand-bindi 96.5 0.3 6.5E-06 40.5 16.5 129 131-286 3-138 (140)
46 cd08862 SRPBCC_Smu440-like Lig 96.5 0.24 5.1E-06 41.6 15.9 132 128-286 2-136 (138)
47 cd07822 SRPBCC_4 Ligand-bindin 96.3 0.3 6.6E-06 40.7 15.2 137 129-289 2-139 (141)
48 cd07818 SRPBCC_1 Ligand-bindin 94.7 1.9 4.2E-05 36.9 14.9 134 129-286 4-148 (150)
49 COG5637 Predicted integral mem 94.4 1.3 2.7E-05 41.3 13.3 142 125-292 68-210 (217)
50 cd07814 SRPBCC_CalC_Aha1-like 94.3 1.9 4.2E-05 35.9 13.6 134 129-287 2-138 (139)
51 cd07823 SRPBCC_5 Ligand-bindin 92.7 6.1 0.00013 34.1 14.7 133 132-286 4-144 (146)
52 cd07825 SRPBCC_7 Ligand-bindin 91.4 5.3 0.00012 33.8 12.3 29 129-158 2-30 (144)
53 COG2867 Oligoketide cyclase/li 90.0 4.6 9.9E-05 36.3 10.7 134 127-286 2-135 (146)
54 cd07820 SRPBCC_3 Ligand-bindin 85.1 22 0.00049 30.1 14.6 36 131-167 3-38 (137)
55 cd08896 SRPBCC_CalC_Aha1-like_ 83.5 28 0.0006 29.9 13.8 140 129-286 2-144 (146)
56 PF08327 AHSA1: Activator of H 60.8 89 0.0019 25.3 14.6 121 137-286 1-123 (124)
57 cd08893 SRPBCC_CalC_Aha1-like_ 56.3 1.1E+02 0.0024 25.1 13.5 132 129-286 2-134 (136)
58 cd08899 SRPBCC_CalC_Aha1-like_ 54.6 1.5E+02 0.0032 25.9 13.4 34 124-158 8-41 (157)
59 PF10766 DUF2592: Protein of u 48.4 17 0.00036 25.7 2.2 19 3-21 7-25 (41)
60 COG3427 Carbon monoxide dehydr 47.1 2.2E+02 0.0047 25.7 14.0 133 128-286 2-143 (146)
61 PF13940 Ldr_toxin: Toxin Ldr, 46.4 14 0.0003 25.2 1.6 18 6-23 14-31 (35)
62 KOG3845 MLN, STAR and related 42.2 11 0.00023 36.6 0.7 133 102-242 27-165 (241)
63 cd08894 SRPBCC_CalC_Aha1-like_ 40.8 2.2E+02 0.0048 24.0 15.6 132 129-286 2-137 (139)
64 KOG3177 Oligoketide cyclase/li 40.6 3.1E+02 0.0067 26.4 10.0 136 126-286 67-204 (227)
65 PF11772 EpuA: DNA-directed RN 37.0 24 0.00053 25.8 1.7 17 7-23 5-21 (47)
66 KOG2200 Tumour suppressor prot 36.9 9.9 0.00022 41.2 -0.4 74 181-270 572-647 (674)
67 cd08897 SRPBCC_CalC_Aha1-like_ 36.8 33 0.00071 29.0 2.9 28 129-157 2-29 (133)
68 PF06295 DUF1043: Protein of u 35.5 17 0.00036 31.7 0.8 14 10-23 2-15 (128)
69 COG3330 Uncharacterized protei 31.8 51 0.0011 31.4 3.4 88 129-219 58-155 (215)
70 cd08901 SRPBCC_CalC_Aha1-like_ 27.8 3.7E+02 0.008 22.6 13.1 28 130-158 3-30 (136)
71 cd07816 Bet_v1-like Ligand-bin 27.4 4.1E+02 0.0089 23.0 16.7 99 129-238 3-104 (148)
72 KOG2091 Predicted member of gl 25.5 1.4E+02 0.0031 30.5 5.4 124 73-202 233-382 (392)
73 PF08041 PetM: PetM family of 25.4 57 0.0012 21.9 1.8 22 2-23 2-23 (31)
74 PTZ00220 Activator of HSP-90 A 22.8 53 0.0012 28.2 1.7 21 137-157 2-22 (132)
75 cd08892 SRPBCC_Aha1 Putative h 22.0 1E+02 0.0022 25.9 3.3 28 130-158 3-30 (126)
76 PF04823 Herpes_UL49_2: Herpes 20.2 1.2E+02 0.0026 25.5 3.2 19 76-94 62-80 (96)
No 1
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-52 Score=388.49 Aligned_cols=210 Identities=48% Similarity=0.825 Sum_probs=192.2
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCCCCcEEEEcccCCCccEEEEe-eCCCCCCCeEEEEEEEecCCHHHHHHHhcCccchh
Q 016753 78 SNVVTEEDLEHLWRLAEMK--DGGPTWIKMMDRSTETMSYQAWG-RDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRS 154 (383)
Q Consensus 78 ~~~vt~~Df~~~~~~~e~~--~~~~~Wel~~dk~~~~~~~kVwr-R~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~ 154 (383)
.+.+|++||.++++++++. +++.+|+++++|+ ++.+|+ |.|.+|+++||+.|+|+|+||+.|+|+++|+|||+
T Consensus 5 ~~~vs~~~~~~~~~~~e~~~~~~~~~We~~~~k~----~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRk 80 (219)
T KOG2761|consen 5 DGGVSEEDLPELLDLLEEKACDAGQGWELVMDKS----TPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRK 80 (219)
T ss_pred cCcccccchHHHHHhhcccccCcccchhhhcccC----CceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHH
Confidence 3569999999999999998 6777999999965 688888 78889999999999999999999999999999999
Q ss_pred hHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeC-CEEEEEEcccCCCCCCCCCCcEEeeeeeeeE
Q 016753 155 KWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAG-TDYYCVTKGVPCNSVPRRDKPRRVDLCYSSW 233 (383)
Q Consensus 155 ~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~-~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw 233 (383)
+||.++++.++||+++.+|++|+||+.|||+||+||||||.||+|+.| +.++|+++++.||++|+++++||+..|.|||
T Consensus 81 kWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~ 160 (219)
T KOG2761|consen 81 KWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGW 160 (219)
T ss_pred HHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEE
Confidence 999999999999998878999999999999999999999999999987 7899999999999999999999999999999
Q ss_pred EEE-EeccCCCCCccceEEEEEEEEecCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 016753 234 CIR-PVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLRVYQKQR 293 (383)
Q Consensus 234 ~Ir-pv~~~~~~G~~tac~V~~~~~~DPGIP~~laN~~~~~g~p~~lkkL~~alrkY~~~r 293 (383)
+|+ ++.+.+++| ++|+++|+++.+.|||.|++|+++++|||++++||++||++|++++
T Consensus 161 ~I~~~~~~~~~~~--~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~~ 219 (219)
T KOG2761|consen 161 LIRVESRSGDEQG--CACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEKR 219 (219)
T ss_pred EEEcccccCCCCc--cEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhcC
Confidence 999 665555444 4677777666666699999999999999999999999999999764
No 2
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=100.00 E-value=4.6e-47 Score=353.37 Aligned_cols=204 Identities=47% Similarity=0.812 Sum_probs=186.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEeeC-CCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhh
Q 016753 80 VVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRD-PKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDD 158 (383)
Q Consensus 80 ~vt~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~-~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~ 158 (383)
.||++||++|++++++....++|++++++++++++|+||+|. +++|+++||++++|+++|+++|+++++|.++|++||+
T Consensus 2 ~~~~~d~~~~~~~~~~~~~~~~W~~~~~k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~ 81 (209)
T cd08870 2 HVSEEDLRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDE 81 (209)
T ss_pred CCCHHHHHHHHHHhcCcCCCCcceEhhhccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhh
Confidence 489999999999998876556899999987766779999995 5589999999999999999999999999999999999
Q ss_pred cCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEee-CCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEE
Q 016753 159 MLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKA-GTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRP 237 (383)
Q Consensus 159 ~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~-~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irp 237 (383)
++.++++|+..+.+++.|+||+.++|||++|||||+.|+++++ ++.++|++++++||.+|++ |+|||+.+.|+|+|+|
T Consensus 82 ~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p 160 (209)
T cd08870 82 TVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRA 160 (209)
T ss_pred heeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEE
Confidence 9999999998554478999999999999999999999998877 7889999999999999999 9999999999999999
Q ss_pred eccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 016753 238 VESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVY 289 (383)
Q Consensus 238 v~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY 289 (383)
++. ++| .|.++|+++.||| ||.|++|+++++++|++|++|+++|++|
T Consensus 161 ~~~--~~~---~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~Y 209 (209)
T cd08870 161 VKG--DGQ---GSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALRKY 209 (209)
T ss_pred ecC--CCC---ceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 962 223 2899999999999 9999999999999999999999999988
No 3
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=100.00 E-value=3.9e-44 Score=334.06 Aligned_cols=196 Identities=21% Similarity=0.408 Sum_probs=174.4
Q ss_pred CCCHHHHHHHHHHHhcC-CCCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHh
Q 016753 80 VVTEEDLEHLWRLAEMK-DGGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWD 157 (383)
Q Consensus 80 ~vt~~Df~~~~~~~e~~-~~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD 157 (383)
.||++||++|++++++. .++++|+++++ +++|+||+| .+++|+.+||++++|+|+|+++|+++++|.++|++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~W~l~~~----~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd 79 (207)
T cd08910 4 TFSEEQFREACAELQQPALDGAAWELLVE----SSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWD 79 (207)
T ss_pred ccCHHHHHHHHHHhcCCCCCCCCeEEEEe----cCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHH
Confidence 59999999999999854 46678999999 458999999 7789999999999999899999999999999999999
Q ss_pred hcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe---eCC-EEEEEEcccCCCCCCCCCCcEEeeeeeeeE
Q 016753 158 DMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK---AGT-DYYCVTKGVPCNSVPRRDKPRRVDLCYSSW 233 (383)
Q Consensus 158 ~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~---~~~-~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw 233 (383)
+++.+ +++. ..+++.|+||..|+|||+||||||+.|+... +++ .+++++++++||.+|+++|+||+..+.++|
T Consensus 80 ~~~~~--~~~~-~~~~~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~ 156 (207)
T cd08910 80 QYVKE--LYEK-ECDGETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSL 156 (207)
T ss_pred HHHHh--heee-cCCCCEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEE
Confidence 99886 4443 3457889999999999999999999876442 243 356789999999999999999999999999
Q ss_pred EEEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 016753 234 CIRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVY 289 (383)
Q Consensus 234 ~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY 289 (383)
+|+|.. ++ .|+++|++|.||| ||.|++|+++++++|.+|++|++||++|
T Consensus 157 ~i~p~~----~~---~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~~y 207 (207)
T cd08910 157 AIESDG----KK---GSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQNY 207 (207)
T ss_pred EEEeCC----CC---ceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 999874 22 2999999999999 9999999999999999999999999988
No 4
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=100.00 E-value=1.4e-43 Score=329.96 Aligned_cols=184 Identities=27% Similarity=0.407 Sum_probs=168.1
Q ss_pred CCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEE
Q 016753 98 GGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMV 176 (383)
Q Consensus 98 ~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~I 176 (383)
+.++|+++++ .++|+||+| .+++|+.+||++++|.|+|+++|+++++|.++|++||+++.++++|++..+++++|
T Consensus 19 ~~~~W~l~~~----~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i 94 (207)
T cd08911 19 EPDGWEPFIE----KKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEI 94 (207)
T ss_pred cCCCcEEEEE----cCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEE
Confidence 3446999999 458999999 56689999999999989999999999999999999999999999999865557899
Q ss_pred EEEEEeecccccccceEEEEEEEee--CCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEE
Q 016753 177 IQWIRKFPFFCSDREYIIGRRIWKA--GTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVIL 254 (383)
Q Consensus 177 vy~~~K~PwPvSdRDyV~~Rri~~~--~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~ 254 (383)
+||..++|||++|||||++|+++.+ ++.++|++++++||.+|+++|+|||..+.|+|+|+|+++.+.+| |+++|
T Consensus 95 ~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~----~~~~~ 170 (207)
T cd08911 95 IYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPG----FEFVL 170 (207)
T ss_pred EEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCC----eEEEE
Confidence 9999999999999999999987755 35578999999999999999999999999999999996544344 89999
Q ss_pred EEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 016753 255 FHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVY 289 (383)
Q Consensus 255 ~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY 289 (383)
++|+||| ||.|++|+++++++|+||++|++||++|
T Consensus 171 ~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~y 207 (207)
T cd08911 171 TYFDNPGVNIPSYITSWVAMSGMPDFLERLRNAALKY 207 (207)
T ss_pred EEEeCCCCccCHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 9999999 9999999999999999999999999988
No 5
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=100.00 E-value=3.8e-40 Score=308.88 Aligned_cols=207 Identities=18% Similarity=0.311 Sum_probs=188.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhH
Q 016753 78 SNVVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKW 156 (383)
Q Consensus 78 ~~~vt~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~W 156 (383)
-.++|++||+.|++++++.+ +|++.++ ++++++|+| .+++++..||++++|+++++++++++++|.++|++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~W~~~~~----~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~W 76 (222)
T cd08871 4 VRLPTDADFEEFKKLCDSTD---GWKLKYN----KNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTW 76 (222)
T ss_pred ecCCCHHHHHHHHHHhcCCC---CcEEEEc----CCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhh
Confidence 35799999999999996533 6999999 458999999 455789999999999889999999999999999999
Q ss_pred hhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEE
Q 016753 157 DDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIR 236 (383)
Q Consensus 157 D~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Ir 236 (383)
|+++.++++|+..+. ++.|+|++.++|||+++||||+.|.+...++.+++++.|++||.+|+++|+||+..+.++|+|+
T Consensus 77 d~~~~e~~~ie~~d~-~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~ 155 (222)
T cd08871 77 DSNMIESFDICQLNP-NNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIR 155 (222)
T ss_pred hhhhceeEEEEEcCC-CCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEE
Confidence 999999999998754 5789999999999999999999988777778899999999999999999999999999999999
Q ss_pred EeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCCC
Q 016753 237 PVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRASGAPL 299 (383)
Q Consensus 237 pv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY~~~r~~~~~~ 299 (383)
|+. ++ .|.|+|+.|.||| ||.|++|+++.+.++.+|++|+++|.+|+++.+..+|-
T Consensus 156 p~~----~~---~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 156 PTG----PK---GCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred ECC----CC---CEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 985 22 2999999999999 99999999999999999999999999999997766553
No 6
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=100.00 E-value=1.1e-36 Score=289.35 Aligned_cols=207 Identities=17% Similarity=0.295 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEee-CCCCCCC--eEEEEEEEecCCHHHHHHHhcCccchhhHhh
Q 016753 82 TEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGR-DPKTGPP--QYRTSTVYEDVTPELVRDFFWDDVFRSKWDD 158 (383)
Q Consensus 82 t~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~--eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~ 158 (383)
.++.+++.++++.+..++++|+++++ +++++||+| .+++|+. .||++++++|+|+++++++++|.++|.+||.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~W~l~~~----~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~ 83 (235)
T cd08872 8 VDEKVQEQLTYALEDVGADGWQLFAE----EGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWET 83 (235)
T ss_pred HHHHHHHHHHHHHccCCCCCCEEEEe----CCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHh
Confidence 45677777788777766668999999 568999999 5667876 7999999999999999999999999999999
Q ss_pred cCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEee--------CCEEEEEEcccCCCCCCCCCCcEEeeeee
Q 016753 159 MLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKA--------GTDYYCVTKGVPCNSVPRRDKPRRVDLCY 230 (383)
Q Consensus 159 ~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~--------~~~~~iv~ksv~hp~~P~~~g~VRV~~~~ 230 (383)
++.+.++||.++. ++.|+|+..|+|||++|||||+.+.+... ++.|+++++|++||.+|+++|+||+....
T Consensus 84 ~~~~~~vie~l~~-~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~ 162 (235)
T cd08872 84 TLENFHVVETLSQ-DTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTV 162 (235)
T ss_pred hhheeEEEEecCC-CCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEe
Confidence 9999999998764 57899999999999999999998776432 15688999999999999999999999855
Q ss_pred ---eeEEEEEecc----CCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016753 231 ---SSWCIRPVES----RRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRASGAPLS 300 (383)
Q Consensus 231 ---Sgw~Irpv~~----~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY~~~r~~~~~~s 300 (383)
+++.|.+-.+ .+++|. |+++|+.|.||| ||+|++|+++++++|+||++|+ .|...+..++|++
T Consensus 163 ~~~~~~~i~~~~g~~~~t~~~~~---~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~----~~~~~~~~~~~~~ 234 (235)
T cd08872 163 AMICQTFVSPPDGNQEITRDNIL---CKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFT----SYVQEKTKGKPIL 234 (235)
T ss_pred eeeeeeeeecCCCcccccCCCCe---EEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHH----HHHHHhcCCCccc
Confidence 2322222111 012443 999999999999 9999999999999999999975 5666666777764
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=3.6e-33 Score=259.30 Aligned_cols=191 Identities=15% Similarity=0.270 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHH-HhcCccchhhHhhcC
Q 016753 83 EEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRD-FFWDDVFRSKWDDML 160 (383)
Q Consensus 83 ~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d-~l~D~e~R~~WD~~l 160 (383)
++-++.+++++++ ++|++.+++ +++++||+| .++++ ..||+++++ +++++++++ ++.|.++|++||+++
T Consensus 11 ~~~~~~~~~~~~~----~~W~l~~~~---~~~i~i~~r~~~~~~-~~~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~ 81 (208)
T cd08868 11 AEALARAWSILTD----PGWKLEKNT---TWGDVVYSRNVPGVG-KVFRLTGVL-DCPAEFLYNELVLNVESLPSWNPTV 81 (208)
T ss_pred HHHHHHHHHHhcC----CCceEEEec---CCCCEEEEEEcCCCc-eEEEEEEEE-cCCHHHHHHHHHcCccccceecCcc
Confidence 4455666666542 279999993 238999999 45545 889999999 599999986 556899999999999
Q ss_pred ceeeEEEeecCCCcEEEEEEEeec--ccccccceEEEEEEEeeCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEe
Q 016753 161 AYSTTLEECPTTGTMVIQWIRKFP--FFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPV 238 (383)
Q Consensus 161 ~~~~~Le~~~~~g~~Ivy~~~K~P--wPvSdRDyV~~Rri~~~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv 238 (383)
.+.++|+.++. ++.|+|++.+.| ||+++||||+.|.+...++.++++++|++||.+|+++|+||++.+.++|.|+|+
T Consensus 82 ~~~~~i~~~d~-~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~ 160 (208)
T cd08868 82 LECKIIQVIDD-NTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPL 160 (208)
T ss_pred cceEEEEEecC-CcEEEEEEecCcCCCcccccceEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEEC
Confidence 99999998764 578999888865 999999999998877778889999999999999999999999999999999999
Q ss_pred ccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016753 239 ESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRV 288 (383)
Q Consensus 239 ~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrk 288 (383)
+++. + .|.|+|+.|.||| ||.|++|.+++++++.++++|++++.+
T Consensus 161 ~~~~--~---~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 161 PNNP--N---KCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred CCCC--C---ceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 7432 2 3999999999999 999999999999999999999998864
No 8
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=1.9e-32 Score=256.04 Aligned_cols=190 Identities=15% Similarity=0.216 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHH-HHhcCccchhhHhhcC
Q 016753 83 EEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVR-DFFWDDVFRSKWDDML 160 (383)
Q Consensus 83 ~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~-d~l~D~e~R~~WD~~l 160 (383)
+|=|+.|+++++..+ +|++..++ .++++||++ .+++| ..||+++++ ++|++.++ +++.|.++|++||+++
T Consensus 11 ~~~~~~~~~~l~~~~---~W~l~~~~---~~gi~V~s~~~~~~~-~~fk~~~~v-~~~~~~l~~~ll~D~~~~~~W~~~~ 82 (209)
T cd08906 11 KEALAVVEQILAQEE---NWKFEKNN---DNGDTVYTLEVPFHG-KTFILKAFM-QCPAELVYQEVILQPEKMVLWNKTV 82 (209)
T ss_pred HHHHHHHHHHhhccc---CCEEEEec---CCCCEEEEeccCCCC-cEEEEEEEE-cCCHHHHHHHHHhChhhccccCccc
Confidence 467899999997643 69998762 268999998 55677 999999999 59999997 6899999999999999
Q ss_pred ceeeEEEeecCCCcEEEEEEEeecc---cccccceEEEEEEEeeCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEE
Q 016753 161 AYSTTLEECPTTGTMVIQWIRKFPF---FCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRP 237 (383)
Q Consensus 161 ~~~~~Le~~~~~g~~Ivy~~~K~Pw---PvSdRDyV~~Rri~~~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irp 237 (383)
.++++|+.++. ++.|+| ....|| |+++||||..|++...++.|++++.++.|+.+|+++||||+++..+||.|.|
T Consensus 83 ~~~~vi~~~~~-~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~ 160 (209)
T cd08906 83 SACQVLQRVDD-NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLK 160 (209)
T ss_pred hhhhheeeccC-CcEEEE-EEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEE
Confidence 99999998764 467777 888888 8999999999888777888888999999999999999999999999999999
Q ss_pred eccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHH
Q 016753 238 VESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLR 287 (383)
Q Consensus 238 v~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alr 287 (383)
.+.. +| .|+++|+.|.||| ||+|++|.++.++|..|+++|++.+.
T Consensus 161 ~~~~--~~---~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 161 SASN--PS---VCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CCCC--CC---ceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7432 23 3999999999999 99999999999999999999998875
No 9
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=100.00 E-value=2.7e-32 Score=250.49 Aligned_cols=193 Identities=22% Similarity=0.294 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEee-CCC-CCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCc
Q 016753 84 EDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGR-DPK-TGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLA 161 (383)
Q Consensus 84 ~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR-~~~-sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~ 161 (383)
+.++.+.+.... .++|++.++. .+++.+|+| .++ +++..||+++++++.+++.+.+++.|.++|++||+++.
T Consensus 6 ~~~~~~~~~~~~---~~~W~~~~~~---~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~ 79 (206)
T smart00234 6 AAAELLKMAAAS---EPGWVLSSEN---ENGDEVRSILSPGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVA 79 (206)
T ss_pred HHHHHHHHhhCC---CCccEEcccc---CCcceEEEEccCCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcc
Confidence 445555555543 3369999972 246788888 444 68999999999974444458899999999999999999
Q ss_pred eeeEEEeecCCCcEEEEEEEeecc-cccccceEEEEEEEe-eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEec
Q 016753 162 YSTTLEECPTTGTMVIQWIRKFPF-FCSDREYIIGRRIWK-AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVE 239 (383)
Q Consensus 162 ~~~~Le~~~~~g~~Ivy~~~K~Pw-PvSdRDyV~~Rri~~-~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~ 239 (383)
+.++||..+ +++.|+|++.++|| |+++||||+.|++.. .++.++++++|++||.+|+++|+||++.+.|+|+|+|++
T Consensus 80 ~~~~ie~~~-~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 80 KAETLEVID-NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred cEEEEEEEC-CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC
Confidence 999999876 45789999999999 999999999988776 467788888999999999999999999999999999986
Q ss_pred cCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016753 240 SRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQ 290 (383)
Q Consensus 240 ~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY~ 290 (383)
+ |. |+|+|+.|.||| ||.|++|.+++++++.+++.|++++++..
T Consensus 159 ~----~~---t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T smart00234 159 N----GP---SKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHC 204 (206)
T ss_pred C----CC---eEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHh
Confidence 3 32 999999999999 99999999999999999999988887543
No 10
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=100.00 E-value=2e-31 Score=248.82 Aligned_cols=192 Identities=12% Similarity=0.160 Sum_probs=166.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHH-HHhcCccchhhHhh
Q 016753 81 VTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVR-DFFWDDVFRSKWDD 158 (383)
Q Consensus 81 vt~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~-d~l~D~e~R~~WD~ 158 (383)
..++.|+.+++++++. ++|++.+.. +++++||++ .+++| +.||+++++ +++++.++ .++.|.+.+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~---~~W~~~~~~---~~gi~v~s~~~~~~~-k~~k~e~~i-~~~~~~l~~~l~~d~e~~~~W~~ 80 (209)
T cd08905 9 QGEEALQKSLSILQDQ---EGWKTEIVA---ENGDKVLSKVVPDIG-KVFRLEVVV-DQPLDNLYSELVDRMEQMGEWNP 80 (209)
T ss_pred HHHHHHHHHHHHhccc---cCCEEEEec---CCCCEEEEEEcCCCC-cEEEEEEEe-cCCHHHHHHHHHhchhhhceecc
Confidence 4567899999998643 369999642 457999999 56677 999999999 59999999 55568899999999
Q ss_pred cCceeeEEEeecCCCcEEEEEEEeeccc---ccccceEEEEEEEeeCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEE
Q 016753 159 MLAYSTTLEECPTTGTMVIQWIRKFPFF---CSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCI 235 (383)
Q Consensus 159 ~l~~~~~Le~~~~~g~~Ivy~~~K~PwP---vSdRDyV~~Rri~~~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~I 235 (383)
++.++++|+.+++ .+.|+|+ ...||| +++||||..|.+.+.++.+++++.+++||.+|+++|+||++...++|.|
T Consensus 81 ~~~~~~vl~~id~-~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l 158 (209)
T cd08905 81 NVKEVKILQRIGK-DTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVL 158 (209)
T ss_pred cchHHHHHhhcCC-CceEEEE-EeccCCCCccCccceEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEE
Confidence 9999999998764 4678887 778887 9999999988776667778888899999999999999999999999999
Q ss_pred EEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHH
Q 016753 236 RPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLR 287 (383)
Q Consensus 236 rpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alr 287 (383)
+|+++++ |+ |.++|+.|.||| ||+|++|.++.+.|..++++|++.+.
T Consensus 159 ~p~~~~~--~~---t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 159 RPLAGDP--SK---TKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EECCCCC--Cc---eEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 9997532 32 999999999999 99999999999999999999998875
No 11
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=99.97 E-value=3.5e-30 Score=240.24 Aligned_cols=191 Identities=14% Similarity=0.235 Sum_probs=167.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcC
Q 016753 82 TEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDML 160 (383)
Q Consensus 82 t~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l 160 (383)
.++-++.+++..+.. ++|+..++ .++++||+| .++.+.+.||++|+++ ++|+.+++++.|.++|.+||.++
T Consensus 7 ~~~~~~~~l~~~~~~---~gWk~~k~----~~~~~v~~k~~~~~~gkl~k~egvi~-~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 7 AQETSQEVLGYSRDT---SGWKVVKT----SKKITVSWKPSRKYHGNLYRVEGIIP-ESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHhhhhcc---cCCeEEec----CCceEEEEEEcCCCCceEEEEEEEec-CCHHHHHHHHhccchhhhhcccc
Confidence 455667777776643 47999987 568999999 5677789999999995 99999999999999999999999
Q ss_pred ceeeEEEeecCCCcEEEEEEEe-eccc-ccccceEEEEEEEe-eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEE
Q 016753 161 AYSTTLEECPTTGTMVIQWIRK-FPFF-CSDREYIIGRRIWK-AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRP 237 (383)
Q Consensus 161 ~~~~~Le~~~~~g~~Ivy~~~K-~PwP-vSdRDyV~~Rri~~-~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irp 237 (383)
.+.++||.+++ +++|.|.+.+ +|++ +|+||||..|.+.. +++.|++.++|++||.+|+++||||++++.+||+|+|
T Consensus 79 ~~~~iie~Id~-~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~p 157 (204)
T cd08904 79 QVYKMLQRIDS-DTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSP 157 (204)
T ss_pred cceeeEEEeCC-CcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEE
Confidence 99999999876 4789998876 4544 89999999887654 6788889999999999999999999999999999999
Q ss_pred eccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 238 VESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 238 v~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~al 286 (383)
+++.+ + .|.++++.+.||+ ||+|++|.+..+.+.+|+.+|++|+
T Consensus 158 l~~~p--~---~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 158 LPENP--A---YSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred CCCCC--C---ceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 97554 2 3899999999999 9999999999999999999999886
No 12
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=5.5e-30 Score=239.06 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=147.7
Q ss_pred CCcEEEEcccCCCccEEEEeeC-CCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEE
Q 016753 100 PTWIKMMDRSTETMSYQAWGRD-PKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQ 178 (383)
Q Consensus 100 ~~Wel~~dk~~~~~~~kVwrR~-~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy 178 (383)
++|++..+ +++++||++. ++ .+..||+++++ ++|++++++++.|.++|++||+++.++++|++.++ .+.|+|
T Consensus 22 ~gW~l~~~----~~gI~Vy~k~~~~-~~~~~~ge~~v-~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~-d~~i~y 94 (205)
T cd08874 22 AGWSYQCL----EKDVVIYYKVFNG-TYHGFLGAGVI-KAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTE-DICLVY 94 (205)
T ss_pred CCcEEEec----CCCEEEEEecCCC-CcceEEEEEEE-cCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCC-CeEEEE
Confidence 37999999 5689999995 55 78899999999 69999999999999999999999999999997654 467999
Q ss_pred EEEeecccc--cccceEEEEEEEeeCCEEEEEEcccCCCCCCCCC-CcEEeeeeeeeEEEEEeccCCCCCccceEEEEEE
Q 016753 179 WIRKFPFFC--SDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRD-KPRRVDLCYSSWCIRPVESRRGNGQLTACEVILF 255 (383)
Q Consensus 179 ~~~K~PwPv--SdRDyV~~Rri~~~~~~~~iv~ksv~hp~~P~~~-g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~ 255 (383)
++...|||+ ++||||..+.+...++.++|..+|++||.+|+.+ ||||+..+.++|.|+|++.+. +|+ |+|+|+
T Consensus 95 ~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g-~~~---t~vty~ 170 (205)
T cd08874 95 LVHETPLCLLKQPRDFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEG-NQY---TRVIYI 170 (205)
T ss_pred EEecCCCCCCCCCCeEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCC-CCc---EEEEEE
Confidence 999999988 9999999887666677777889999999999986 999999999999999985433 444 999999
Q ss_pred EEecCC---CCHHHHHHHHhhhHH
Q 016753 256 HHEDMG---IPREIAKLGIRQGMW 276 (383)
Q Consensus 256 ~~~DPG---IP~~laN~~~~~g~p 276 (383)
.|.||| ||+|++|.++.+++-
T Consensus 171 ~q~DPggg~iP~~l~N~~~~~~p~ 194 (205)
T cd08874 171 AQVALCGPDVPAQLLSSLSKRQPL 194 (205)
T ss_pred EEECCCCCCCCHHHHhHHHHhccH
Confidence 999999 999999999997654
No 13
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.97 E-value=1.8e-29 Score=235.46 Aligned_cols=190 Identities=14% Similarity=0.127 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEeeC-CCCCCCeEEEEEEEecCCHHHHHHHhcCcc--chhhHhhc
Q 016753 83 EEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRD-PKTGPPQYRTSTVYEDVTPELVRDFFWDDV--FRSKWDDM 159 (383)
Q Consensus 83 ~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~-~~sgl~eyKa~~v~~d~spe~v~d~l~D~e--~R~~WD~~ 159 (383)
++-+++++++.+ ..++|++.++ +++++||+|+ .+.....||++++++ +++++++++++|.+ +|++||.+
T Consensus 8 ~~~~~~~l~~~~---~~~~W~~~~~----~~~i~v~~~~~~~~~~~~~k~e~~i~-~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 8 ESVADKMLLYRR---DESGWKTCRR----TNEVAVSWRPSAEFAGNLYKGEGIVY-ATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred HHHHHHHHhhhc---cccCCEEEEc----CCCEEEEeeecCCCCCcEEEEEEEec-CCHHHHHHHHHhccchhhhhhhhc
Confidence 344455555553 2347999998 5689999994 344446699999995 99999999999764 78999999
Q ss_pred CceeeEEEeecCCCcEEEEEEEeeccc----ccccceEEEEEEEee-CCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEE
Q 016753 160 LAYSTTLEECPTTGTMVIQWIRKFPFF----CSDREYIIGRRIWKA-GTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWC 234 (383)
Q Consensus 160 l~~~~~Le~~~~~g~~Ivy~~~K~PwP----vSdRDyV~~Rri~~~-~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~ 234 (383)
+.++++||++++ ++.|+|+ ++||| +|+||||..|.+... ++.+++..++++||.+|+++||||++...+||.
T Consensus 80 ~~~~~vle~id~-~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~ 156 (208)
T cd08903 80 VKDFEVVEAISD-DVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCF 156 (208)
T ss_pred cccEEEEEEecC-CEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEE
Confidence 999999999864 3566666 77887 999999998776554 455667778999999999999999999999999
Q ss_pred EEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016753 235 IRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRV 288 (383)
Q Consensus 235 Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrk 288 (383)
++|++..+ + .|.++|+.|.||| ||+|++|.++.++|..|+++|++++.+
T Consensus 157 ~~~~~~~~--~---~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 157 CEPVPGEP--D---KTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEECCCCC--C---ceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 99997543 2 2999999999999 999999999999999999999998864
No 14
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.97 E-value=2.6e-29 Score=230.03 Aligned_cols=191 Identities=21% Similarity=0.332 Sum_probs=158.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEeeCCC-C-CCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCcee
Q 016753 86 LEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPK-T-GPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYS 163 (383)
Q Consensus 86 f~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~~~-s-gl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~ 163 (383)
...+.++..+. +.+|++.++++ ...+..++..++ + ++..||+.++++ +++++++..++|... +||+++.+.
T Consensus 7 ~~~~~~~~~~~--~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~~v~-~~~~~~~~~~~~~~~--~Wd~~~~~~ 79 (206)
T PF01852_consen 7 MQEELALAQED--EDGWKLYKDKK--NGDVYYKKVSPSDSCPIKMFKAEGVVP-ASPEQVVEDLLDDRE--QWDKMCVEA 79 (206)
T ss_dssp HHHHHHHHHHT--CTTCEEEEEET--TTCEEEEEEECSSSTSCEEEEEEEEES-SCHHHHHHHHHCGGG--HHSTTEEEE
T ss_pred HHHHHHHhhcC--CCCCeEeEccC--CCeEEEEEeCccccccceEEEEEEEEc-CChHHHHHHHHhhHh--hcccchhhh
Confidence 34444444443 34799999643 333444444443 3 789999999995 888877777777666 999999999
Q ss_pred eEEEeecCCCcEEEEEEEeecc--cccccceEEEEEEEe-eCCEEEEEEcccCCCCCCC-CCCcEEeeeeeeeEEEEEec
Q 016753 164 TTLEECPTTGTMVIQWIRKFPF--FCSDREYIIGRRIWK-AGTDYYCVTKGVPCNSVPR-RDKPRRVDLCYSSWCIRPVE 239 (383)
Q Consensus 164 ~~Le~~~~~g~~Ivy~~~K~Pw--PvSdRDyV~~Rri~~-~~~~~~iv~ksv~hp~~P~-~~g~VRV~~~~Sgw~Irpv~ 239 (383)
++||.++. ++.|+|++.++|| |+++||||+.|.+.. .++.++++.+|++||.+|+ .+|+||+..+.|||+|+|++
T Consensus 80 ~~le~~~~-~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~ 158 (206)
T PF01852_consen 80 EVLEQIDE-DTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG 158 (206)
T ss_dssp EEEEEEET-TEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET
T ss_pred eeeeecCC-CCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEcc
Confidence 99999765 5889999999999 999999999988776 6888999999999999999 99999999999999999996
Q ss_pred cCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 016753 240 SRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQK 291 (383)
Q Consensus 240 ~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY~~ 291 (383)
+ |. |+|+|+.|.||| ||.|++|.++.++++.++++|++++++|.+
T Consensus 159 ~----~~---~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 159 D----GR---TRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp T----CE---EEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred C----CC---ceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 3 32 999999999999 999999999999999999999999998753
No 15
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.97 E-value=1.1e-29 Score=240.76 Aligned_cols=182 Identities=15% Similarity=0.200 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEeeCCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcC
Q 016753 81 VTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDML 160 (383)
Q Consensus 81 vt~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l 160 (383)
++-.-.+.|..+.+ .++|++..+ +++|+||+++ ++++..||+++++ |+|++++++++.|.++|++||..+
T Consensus 41 ~~~~~~~~~~~~a~----~~~W~l~~d----kdgIkVytr~-~s~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~ 110 (236)
T cd08914 41 LSDSNVEALKKLAA----KSGWEVTST----VEKIKIYTLE-EHDVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPHF 110 (236)
T ss_pred EeeCCHHHhhhhcc----cCCCEEEEc----cCCEEEEEec-CCCcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHhh
Confidence 34444455554443 237999999 5689999995 7778999999999 699999999999999999999999
Q ss_pred ceeeEEEeecCCCcEEEEEEEeecc-cccccceEEEEEEE--e-eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEE
Q 016753 161 AYSTTLEECPTTGTMVIQWIRKFPF-FCSDREYIIGRRIW--K-AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIR 236 (383)
Q Consensus 161 ~~~~~Le~~~~~g~~Ivy~~~K~Pw-PvSdRDyV~~Rri~--~-~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Ir 236 (383)
.++++|++.+++ +. +|++.++|| |++|||||+.+..+ . +++.|+|..+|++||.+|+++||||+..+.+||.|+
T Consensus 111 ~e~~vI~qld~~-~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~ 188 (236)
T cd08914 111 LSCEVIDWVSED-DQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIH 188 (236)
T ss_pred ceEEEEEEeCCC-cC-EEEEecCCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEE
Confidence 999999998754 34 688889999 99999999976654 3 334588999999999999999999999999999999
Q ss_pred EeccCCCCCccceEEEEEEEEecCC-CCHHHHHHH-HhhhHHHHHHH
Q 016753 237 PVESRRGNGQLTACEVILFHHEDMG-IPREIAKLG-IRQGMWGAVKK 281 (383)
Q Consensus 237 pv~~~~~~G~~tac~V~~~~~~DPG-IP~~laN~~-~~~g~p~~lkk 281 (383)
|+. +|+ |+|+|+.|.||| ||.|++|.+ ..+....++..
T Consensus 189 pl~----~~~---~~VtY~~~~dPg~lp~~~~n~~~~~~~~~~~~~~ 228 (236)
T cd08914 189 AID----SNS---CTVSYFNQISASILPYFAGNLGGWSKSIEETAAS 228 (236)
T ss_pred EcC----CCc---EEEEEEEEcCCccchheEEecchhhhHHHHHHHH
Confidence 984 332 999999999999 999999986 45455555544
No 16
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.97 E-value=5.8e-29 Score=230.77 Aligned_cols=189 Identities=15% Similarity=0.171 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEeeC-CCCCCCeEEEEEEEecCCHHHHHHHhcC--ccchhhHhhcC
Q 016753 84 EDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRD-PKTGPPQYRTSTVYEDVTPELVRDFFWD--DVFRSKWDDML 160 (383)
Q Consensus 84 ~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~-~~sgl~eyKa~~v~~d~spe~v~d~l~D--~e~R~~WD~~l 160 (383)
+=.+++++.++.. ++|++.++ +++++||+++ .+.....||++++++ ++++++++++.| .++|++||+++
T Consensus 9 ~~~~~~~~~~~~~---~~W~~~~~----~~~i~v~~~~~~~~~~~~~k~~~~i~-~~~~~v~~~l~d~~~~~r~~Wd~~~ 80 (206)
T cd08867 9 KLANEALQYINDT---DGWKVLKT----VKNITVSWKPSTEFTGHLYRAEGIVD-ALPEKVIDVIIPPCGGLRLKWDKSL 80 (206)
T ss_pred HHHHHHHHHhcCc---CCcEEEEc----CCCcEEEEecCCCCCCEEEEEEEEEc-CCHHHHHHHHHhcCccccccccccc
Confidence 3355666666533 37999998 4589999994 333457899999995 899999999999 89999999999
Q ss_pred ceeeEEEeecCCCcEEEEEEEeec--ccccccceEEEEEEEe-eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEE
Q 016753 161 AYSTTLEECPTTGTMVIQWIRKFP--FFCSDREYIIGRRIWK-AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRP 237 (383)
Q Consensus 161 ~~~~~Le~~~~~g~~Ivy~~~K~P--wPvSdRDyV~~Rri~~-~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irp 237 (383)
.++++|+.++. ++.|+|+..+.| +++++||||+.+.+.. +++.+++..+|++||.+|+++|+||+....+||.|+|
T Consensus 81 ~~~~~le~id~-~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p 159 (206)
T cd08867 81 KHYEVLEKISE-DLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSP 159 (206)
T ss_pred cceEEEEEeCC-CeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEE
Confidence 99999999864 567888754433 2489999998764332 3457888889999999999999999999999999999
Q ss_pred eccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 238 VESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 238 v~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~al 286 (383)
.+.++ + .|.++|+.|.||| ||.|++|.++.+++..|+++|++++
T Consensus 160 ~~~~~--~---~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 160 LKGSP--D---KSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CCCCC--C---ceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 87433 2 3999999999999 9999999999999999999998875
No 17
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.97 E-value=5.6e-29 Score=230.33 Aligned_cols=182 Identities=21% Similarity=0.201 Sum_probs=153.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEeeCC-C-CCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCcee
Q 016753 86 LEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDP-K-TGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYS 163 (383)
Q Consensus 86 f~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~~-~-sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~ 163 (383)
.++|++...+ ..++|++..+ .++++||.|+. + +++..||++++++ ++++++++.++| .|++||+.+.++
T Consensus 7 ~~~ll~~~~~--~~~~W~~~~~----~~gi~I~~k~~~~~~~l~~~K~~~~v~-a~~~~v~~~l~d--~r~~Wd~~~~~~ 77 (197)
T cd08869 7 VQDLLREARD--KSKGWVSVSS----SDHVELAFKKVDDGHPLRLWRASTEVE-APPEEVLQRILR--ERHLWDDDLLQW 77 (197)
T ss_pred HHHHHHHHhh--ccCCceEEec----CCcEEEEEEeCCCCCcEEEEEEEEEeC-CCHHHHHHHHHH--HHhccchhhheE
Confidence 3455555443 3458999999 55899999944 3 4789999999995 999999999986 589999999999
Q ss_pred eEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe--eCCEEEEEEcccCCC-CCCCCCCcEEeeeeeeeEEEEEecc
Q 016753 164 TTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK--AGTDYYCVTKGVPCN-SVPRRDKPRRVDLCYSSWCIRPVES 240 (383)
Q Consensus 164 ~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~--~~~~~~iv~ksv~hp-~~P~~~g~VRV~~~~Sgw~Irpv~~ 240 (383)
++|+.+++ +++|+|++.+.|||+++||||..|.+.. .++.++|.++|++|| .+|+ ||||+..+.+||.|+|++
T Consensus 78 ~vie~id~-~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~- 153 (197)
T cd08869 78 KVVETLDE-DTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCG- 153 (197)
T ss_pred EEEEEecC-CcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECC-
Confidence 99999864 5789999999999999999999875443 356788999999995 6777 999999999999999985
Q ss_pred CCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHH
Q 016753 241 RRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLR 287 (383)
Q Consensus 241 ~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alr 287 (383)
+|+ |+|+|+.|.||| ||.|++|... +.++..|++|+.-++
T Consensus 154 ---~~~---t~vty~~~~Dp~G~iP~wl~N~~~-~~~~~~~~~l~~~~~ 195 (197)
T cd08869 154 ---SGK---SRVTHICRVDLRGRSPEWYNKVYG-HLCARELLRIRDSFR 195 (197)
T ss_pred ---CCC---eEEEEEEEECCCCCCCceeecchH-hHHHHHHHHHHhhcc
Confidence 233 999999999999 9999988777 788899999987654
No 18
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.97 E-value=7.8e-29 Score=231.33 Aligned_cols=188 Identities=12% Similarity=0.158 Sum_probs=162.8
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCcee
Q 016753 85 DLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYS 163 (383)
Q Consensus 85 Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~ 163 (383)
-++++++.+++ .++|++..+ ++++++|.| .+++++..+|++++++ ++++.++++++|.+++++|++.+.+.
T Consensus 10 ~~~~~~~~l~~---~~~W~~~~~----~~~i~v~~r~~~~~~~~~~k~e~~i~-~~~~~~~~vl~d~~~~~~W~p~~~~~ 81 (215)
T cd08877 10 IMQENLKDLDE---SDGWTLQKE----SEGIRVYYKFEPDGSLLSLRMEGEID-GPLFNLLALLNEVELYKTWVPFCIRS 81 (215)
T ss_pred HHHHHHhcccC---CCCcEEecc----CCCeEEEEEeCCCCCEEEEEEEEEec-CChhHeEEEEehhhhHhhhcccceee
Confidence 35566666654 347999999 568999999 5666699999999995 89999999999999999999999999
Q ss_pred eEEEeecCCCcEEEEEEEeecccccccceEEE-EEEE--eeCCEEEEEEcccCCCC---------CCCCC-CcEEeeeee
Q 016753 164 TTLEECPTTGTMVIQWIRKFPFFCSDREYIIG-RRIW--KAGTDYYCVTKGVPCNS---------VPRRD-KPRRVDLCY 230 (383)
Q Consensus 164 ~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~-Rri~--~~~~~~~iv~ksv~hp~---------~P~~~-g~VRV~~~~ 230 (383)
+.|+.... .+.++|+..++|||+++||+|+. +.+. ++++.+++..+|++|+. +|+.+ |+||++...
T Consensus 82 ~~l~~~~~-~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~ 160 (215)
T cd08877 82 KKVKQLGR-ADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKY 160 (215)
T ss_pred EEEeecCC-ceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEec
Confidence 99988654 47899999999999999999975 3232 25677889999999876 79999 999999999
Q ss_pred eeEEEEEeccCCCCCccceEEEEEEEEecCC---CCHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016753 231 SSWCIRPVESRRGNGQLTACEVILFHHEDMG---IPREIAKLGIRQGMWGAVKKIEPGLRV 288 (383)
Q Consensus 231 Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG---IP~~laN~~~~~g~p~~lkkL~~alrk 288 (383)
++|.|+|+. +|+ |.++|+.|.||| ||.|++|+++++.++.++.+|+++|.+
T Consensus 161 ~~~~i~p~~----~~~---t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 161 YGFVITPIS----PTK---CYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred ceEEEEEcC----CCC---eEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999995 332 899999999998 999999999999999999999999875
No 19
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.97 E-value=6.4e-29 Score=236.85 Aligned_cols=171 Identities=13% Similarity=0.207 Sum_probs=146.2
Q ss_pred HHHHHhcCCCCCCcEEEEcccCCCccEEEEeeCCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEe
Q 016753 89 LWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEE 168 (383)
Q Consensus 89 ~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~ 168 (383)
.+++|.+.+ +|++..+ +++|+||+++ ++.+..||+++++ ++|++++++++.|.++|++||+++.++++|+.
T Consensus 51 ~l~~l~~~~---~W~l~~~----~~gI~Vyt~~-~s~~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~ 121 (240)
T cd08913 51 ALKMLVAKD---NWVLSSE----KNQVRLYTLE-EDKFLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQ 121 (240)
T ss_pred HHHhhcccC---CCEEEEc----cCCEEEEEEe-CCCccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhhccEEEEEEe
Confidence 344554433 6999999 5689999975 4556799999999 59999999999999999999999999999999
Q ss_pred ecCCCcEEEEEEEeecc--cccccceEEEEEEEe---eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCC
Q 016753 169 CPTTGTMVIQWIRKFPF--FCSDREYIIGRRIWK---AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRG 243 (383)
Q Consensus 169 ~~~~g~~Ivy~~~K~Pw--PvSdRDyV~~Rri~~---~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~ 243 (383)
++++ + .+|++...|| |++|||||..+++.. +++.|+|..+++.||.+|+++||||++...++|+|+|..
T Consensus 122 id~~-~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~---- 195 (240)
T cd08913 122 VDED-D-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEES---- 195 (240)
T ss_pred cCCC-c-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECC----
Confidence 7654 3 4688888888 999999999876544 345688899999999999999999999999999999874
Q ss_pred CCccceEEEEEEEEecCC-CCHHHHHHHHhhhHHH
Q 016753 244 NGQLTACEVILFHHEDMG-IPREIAKLGIRQGMWG 277 (383)
Q Consensus 244 ~G~~tac~V~~~~~~DPG-IP~~laN~~~~~g~p~ 277 (383)
+|. |+++|+.|+||| ||.|++|.++.+.+..
T Consensus 196 ~~~---t~vtY~~~~dPG~LP~~~~N~~~~~~p~~ 227 (240)
T cd08913 196 DQL---TKVSYYNQATPGVLPYISTDIAGLSSEFY 227 (240)
T ss_pred CCc---EEEEEEEEeCCccccHHHhhhhhhccchh
Confidence 343 899999999999 9999999998887654
No 20
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.96 E-value=3.6e-28 Score=217.59 Aligned_cols=183 Identities=23% Similarity=0.375 Sum_probs=159.6
Q ss_pred HHHHHHHhcCCCCCCcEEEEcccCCCccEEEEeeC-CCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeE
Q 016753 87 EHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRD-PKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTT 165 (383)
Q Consensus 87 ~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~-~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~ 165 (383)
..++++.+.. ++|++..+ +.++++|++. +++++..+|++++++ +|++++++++.|.+.|++||+.+.+.++
T Consensus 5 ~~~~~~~~~~---~~W~~~~~----~~~v~vy~~~~~~~~~~~~k~~~~i~-~~~~~v~~~l~d~~~~~~w~~~~~~~~v 76 (193)
T cd00177 5 EELLELLEEP---EGWKLVKE----KDGVKIYTKPYEDSGLKLLKAEGVIP-ASPEQVFELLMDIDLRKKWDKNFEEFEV 76 (193)
T ss_pred HHHhhccccC---CCeEEEEE----CCcEEEEEecCCCCCceeEEEEEEEC-CCHHHHHHHHhCCchhhchhhcceEEEE
Confidence 3444444332 47999999 4589999994 456899999999996 7999999999999999999999999999
Q ss_pred EEeecCCCcEEEEEEEeecccccccceEEEEEEEeeC-CEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCC
Q 016753 166 LEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAG-TDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGN 244 (383)
Q Consensus 166 Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~-~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~ 244 (383)
|+.... +..++|++.+.|||+++||||+.+.....+ +.++++.+|++|+.+|+.+++||+..+.++|+|+|++ +
T Consensus 77 l~~~~~-~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~----~ 151 (193)
T cd00177 77 IEEIDE-HTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD----P 151 (193)
T ss_pred EEEeCC-CeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC----C
Confidence 998754 478999999999999999999988766554 7899999999999999999999999999999999993 2
Q ss_pred CccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHH
Q 016753 245 GQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPG 285 (383)
Q Consensus 245 G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~a 285 (383)
| .|+++|+.|.||| ||.|++|.++...+..+++.++..
T Consensus 152 ~---~~~vt~~~~~D~~g~iP~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 152 G---KTKVTYVLQVDPKGSIPKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred C---CEEEEEEEeeCCCCCccHHHHHhhhhhccHHHHHHHHHh
Confidence 3 2999999999999 999999999999999999887654
No 21
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.96 E-value=5.6e-29 Score=236.30 Aligned_cols=183 Identities=14% Similarity=0.151 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEeeCCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhc
Q 016753 80 VVTEEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDM 159 (383)
Q Consensus 80 ~vt~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~ 159 (383)
.++...++.|..+.++ ++|++..+ +++|+||+|+ ++++..||+++++ ++|++++++++.|.++|++||..
T Consensus 39 ~~~~~~~~~l~~l~~~----~~W~l~~~----k~gIkVytr~-~s~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 39 YLSYGNVTALKRLAAK----SDWTVASS----TTSVTLYTLE-QDGVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred EEeeCCHHHHhhcccc----CCCEEEEc----CCCEEEEEec-CCCceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhc
Confidence 4667778888877542 36999999 5689999998 6888999999999 59999999999999999999999
Q ss_pred CceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe---eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEE
Q 016753 160 LAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK---AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIR 236 (383)
Q Consensus 160 l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~---~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Ir 236 (383)
+.++++|+++++ .+.++|+..++|||++|||||..+.+.. +++.|+|.++|++||.+|+++||||+..+.+||.|+
T Consensus 109 ~~e~evI~~id~-d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~ 187 (235)
T cd08873 109 GRSCEEVKRVGE-DDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIR 187 (235)
T ss_pred ccEEEEEEEeCC-CcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEE
Confidence 999999998764 4578999999999999999999876653 235588999999999999999999999999999999
Q ss_pred EeccCCCCCccceEEEEEEEEecCC-CCHHHHHHH-HhhhHHHHHH
Q 016753 237 PVESRRGNGQLTACEVILFHHEDMG-IPREIAKLG-IRQGMWGAVK 280 (383)
Q Consensus 237 pv~~~~~~G~~tac~V~~~~~~DPG-IP~~laN~~-~~~g~p~~lk 280 (383)
|.. +|+ |+|+|+.|.||| +|=---|.+ ..+....++.
T Consensus 188 p~~----~~~---t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~ 226 (235)
T cd08873 188 QDC----GTC---TEVSYYNETNPKLLSYVTCNLAGLSALYCRTFH 226 (235)
T ss_pred ECC----CCc---EEEEEEEEcCCCccceeeecchhhhHHHHHHHH
Confidence 984 343 999999999999 554333433 3334444444
No 22
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=7.5e-28 Score=219.75 Aligned_cols=173 Identities=14% Similarity=0.233 Sum_probs=154.4
Q ss_pred CCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEE
Q 016753 100 PTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQ 178 (383)
Q Consensus 100 ~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy 178 (383)
.+|++.++ ++++++|++ .+++++..||++++++ ++|+++++++.|.++|++||+.+.+++++|... +++.+.|
T Consensus 17 ~~W~~~~~----~~~v~v~~~~~~~~~~~~~k~~~~i~-~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~-~~~~i~~ 90 (195)
T cd08876 17 GDWQLVKD----KDGIKVYTRDVEGSPLKEFKAVAEVD-ASIEAFLALLRDTESYPQWMPNCKESRVLKRTD-DNERSVY 90 (195)
T ss_pred CCCEEEec----CCCeEEEEEECCCCCeEEEEEEEEEe-CCHHHHHHHHhhhHhHHHHHhhcceEEEeecCC-CCcEEEE
Confidence 36999999 568999999 5567789999999996 899999999999999999999999999999764 3478999
Q ss_pred EEEeecccccccceEEEEEEEee--CCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEE
Q 016753 179 WIRKFPFFCSDREYIIGRRIWKA--GTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFH 256 (383)
Q Consensus 179 ~~~K~PwPvSdRDyV~~Rri~~~--~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~ 256 (383)
...++|||+++||||+.++.... ++.+++...+++|+ +|+++++||+..+.++|.|+|++. | .|+|+|+.
T Consensus 91 ~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~----~---~t~vt~~~ 162 (195)
T cd08876 91 TVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN----G---KTRVTYQA 162 (195)
T ss_pred EEEecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC----C---eEEEEEEE
Confidence 99999999999999997766543 56777888888887 899999999999999999999962 2 39999999
Q ss_pred EecCC--CCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 257 HEDMG--IPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 257 ~~DPG--IP~~laN~~~~~g~p~~lkkL~~al 286 (383)
+.||+ ||.|++|.++++.++++|.+|++.+
T Consensus 163 ~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 163 YADPGGSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 9999999999999999999998876
No 23
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.94 E-value=2.7e-26 Score=212.24 Aligned_cols=174 Identities=13% Similarity=0.187 Sum_probs=154.0
Q ss_pred CCcEEEEcccCCCccEEEEee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEE-
Q 016753 100 PTWIKMMDRSTETMSYQAWGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVI- 177 (383)
Q Consensus 100 ~~Wel~~dk~~~~~~~kVwrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Iv- 177 (383)
++|++.++ ++++.||+| .++++.+.||++++++ ..+++|++.+.+..+|.+||+++.++++||++++ ++.|.
T Consensus 23 ~~Wkl~k~----~~~~~v~~k~~~ef~gkl~R~Egvv~-~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~-dt~I~~ 96 (202)
T cd08902 23 EEWRVAKK----SKDVTVWRKPSEEFGGYLYKAQGVVE-DVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEE-NCCVMR 96 (202)
T ss_pred cCcEEEEe----CCCEEEEEecCCcCCCceEEEEEEec-CCHHHHHHHHhcccchhcccchhhheeHhhhhcC-CcEEEE
Confidence 47999999 568999999 7899999999999995 9999999999999999999999999999999875 47786
Q ss_pred EEEEeecc-cccccceEEEEEEEeeCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEE
Q 016753 178 QWIRKFPF-FCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFH 256 (383)
Q Consensus 178 y~~~K~Pw-PvSdRDyV~~Rri~~~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~ 256 (383)
|...+.|+ .+|+||||..+++.+.++.++....|++|+..|+ ||||++++.+||+++|++++. +.|.++++.
T Consensus 97 yvt~~~~~~iISpRDFVdv~~~~~~~d~~~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p-----~k~~~t~~l 169 (202)
T cd08902 97 YTTAGQLLNIISPREFVDFSYTTQYEDGLLSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNP-----SHSLLTGYI 169 (202)
T ss_pred EEcccCCcCccCccceEEEEEEEEeCCCeEEEEeeecCCCCCC--CeEeecccccEEEEEECCCCC-----CceEEEEEE
Confidence 55566666 5699999998887766555666689999998877 999999999999999998654 248999999
Q ss_pred EecCC--CCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 257 HEDMG--IPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 257 ~~DPG--IP~~laN~~~~~g~p~~lkkL~~al 286 (383)
+.|++ ||++++|.+..+++.+|+.+|++++
T Consensus 170 q~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 170 QTDLRGMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EecCCCCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999 9999999999999999999998876
No 24
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=4.7e-25 Score=205.74 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=138.5
Q ss_pred CcEEEEcccCCCccEEEEe-e-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEE
Q 016753 101 TWIKMMDRSTETMSYQAWG-R-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQ 178 (383)
Q Consensus 101 ~Wel~~dk~~~~~~~kVwr-R-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy 178 (383)
+|..+.. .+++.+.. | .+++++..+|++++|+ ++++++++.+.|. |.+||+.+.+.++|+.++. .++|+|
T Consensus 28 ~w~~~~~----~~~~el~~~k~~~gs~l~~~r~~~~i~-a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~-~~~I~Y 99 (204)
T cd08908 28 GWVSYST----SEQAELSYKKVSEGPPLRLWRTTIEVP-AAPEEILKRLLKE--QHLWDVDLLDSKVIEILDS-QTEIYQ 99 (204)
T ss_pred CCcccCC----CCcEEEEEeccCCCCCcEEEEEEEEeC-CCHHHHHHHHHhh--HHHHHHHhhheEeeEecCC-CceEEE
Confidence 5766644 33455533 3 4567899999999996 8999999999888 9999999999999998764 578999
Q ss_pred EEEeecccccccceEEEEEEEe--eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEE
Q 016753 179 WIRKFPFFCSDREYIIGRRIWK--AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFH 256 (383)
Q Consensus 179 ~~~K~PwPvSdRDyV~~Rri~~--~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~ 256 (383)
++.+.|||+++||||..|.+.. .++.+++.++|++|+.+|++ +||+..+.++|.|+|.. +|+ |+|+|+.
T Consensus 100 y~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g----~g~---t~vtyi~ 170 (204)
T cd08908 100 YVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCG----SGK---SKLTYMC 170 (204)
T ss_pred EEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECC----CCc---EEEEEEE
Confidence 9999999999999999987543 35668899999999999966 79999999999999984 343 9999999
Q ss_pred EecCC--CCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 257 HEDMG--IPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 257 ~~DPG--IP~~laN~~~~~g~p~~lkkL~~al 286 (383)
|.||| ||.|++|.+-. .+-..|.+|+..+
T Consensus 171 ~~DPgG~iP~W~~N~~g~-~~~~~~~~~r~sf 201 (204)
T cd08908 171 RIDLRGHMPEWYTKSFGH-LCAAEVVKIRDSF 201 (204)
T ss_pred EeCCCCCCcHHHHhhHHH-HHHHHHHHHHhhc
Confidence 99999 99999998643 4445555655443
No 25
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=4.1e-25 Score=204.83 Aligned_cols=184 Identities=16% Similarity=0.158 Sum_probs=156.8
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEeeCCC--CCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCc
Q 016753 84 EDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGRDPK--TGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLA 161 (383)
Q Consensus 84 ~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR~~~--sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~ 161 (383)
+..+.|+++.-+ ...+|....+ .++++||.++.+ +.+...|+.++|++++++.+.+++.| |..||.+|+
T Consensus 13 ~~~~~~lre~~e--k~kgW~~~~~----~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~ 83 (205)
T cd08907 13 DNVQCLLREASE--RFKGWHSAPG----PDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLL 83 (205)
T ss_pred HHHHHHHHHhhh--ccCCceeecC----CCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHH
Confidence 344455544333 3347999988 457999999655 45889999999999999999999999 999999999
Q ss_pred eeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe--eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEec
Q 016753 162 YSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK--AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVE 239 (383)
Q Consensus 162 ~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~--~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~ 239 (383)
+.++||.++. +++|+||+.+.|.|+.+||||..|.++. ..+.++|++.||+|+.+|+.+| ||+..+.+||.|+|..
T Consensus 84 e~~~Ie~Ld~-n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g 161 (205)
T cd08907 84 HSQVIEALEN-NTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCG 161 (205)
T ss_pred hhhhheeecC-CCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECC
Confidence 9999999864 5899999999999999999999987542 2346999999999999999999 9999999999999985
Q ss_pred cCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 240 SRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 240 ~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~al 286 (383)
.|. |.++|+.+.||+ +|.|+ |.+..+.+-.-|.+|+..+
T Consensus 162 ----~g~---s~ltyi~rvD~rG~~P~Wy-nk~~g~~~a~~l~~ir~sF 202 (205)
T cd08907 162 ----MGR---SRLTHICRADLRGRSPDWY-NKVFGHLCAMEVARIRDSF 202 (205)
T ss_pred ----CCC---eEEEEEEEeCCCCCCcHHH-HHhHHHHHHHHHHHHHhhc
Confidence 332 899999999999 99999 9999988888888887654
No 26
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.92 E-value=1e-23 Score=196.82 Aligned_cols=169 Identities=16% Similarity=0.164 Sum_probs=137.7
Q ss_pred CcEEEEcccCCCccEEE-Eee-CCCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEE
Q 016753 101 TWIKMMDRSTETMSYQA-WGR-DPKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQ 178 (383)
Q Consensus 101 ~Wel~~dk~~~~~~~kV-wrR-~~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy 178 (383)
+|..+.. .++..+ |.| .+++++..+|+.+.++ ++|++|+..+.+ .|.+||.++.+.+++|.++. +++|+|
T Consensus 28 ~w~~~~~----~~~~e~~ykK~~d~~~lk~~r~~~ei~-~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~-~tdi~~ 99 (205)
T cd08909 28 GWISCSS----SDNTELAYKKVGDGNPLRLWKVSVEVE-APPSVVLNRVLR--ERHLWDEDFLQWKVVETLDK-QTEVYQ 99 (205)
T ss_pred CCcccCC----cCCeEEEEecCCCCCceEEEEEEEEeC-CCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCC-CcEEEE
Confidence 4666655 334555 334 4567899999999996 888888877766 79999999999999999864 489999
Q ss_pred EEEeecccccccceEEEEEEEe--eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEE
Q 016753 179 WIRKFPFFCSDREYIIGRRIWK--AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFH 256 (383)
Q Consensus 179 ~~~K~PwPvSdRDyV~~Rri~~--~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~ 256 (383)
+..+.|+|+++||||..|++.. .+++|+|+++|++|+.+|+. |+||+..+.+||.|+|.+ +|+ |.|+|+.
T Consensus 100 y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~----~g~---trvt~i~ 171 (205)
T cd08909 100 YVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCG----SGK---SRLTHIC 171 (205)
T ss_pred EEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECC----CCC---EEEEEEE
Confidence 9999999999999999987653 35779999999999999985 999999999999999995 343 9999999
Q ss_pred EecCC--CCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 257 HEDMG--IPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 257 ~~DPG--IP~~laN~~~~~g~p~~lkkL~~al 286 (383)
+.||+ +|.|++|..- +.+-..|.+|+..+
T Consensus 172 ~vDpkG~~P~W~~n~~g-~~~~~~~~~~r~sf 202 (205)
T cd08909 172 RVDLKGHSPEWYNKGFG-HLCAAEAARIRNSF 202 (205)
T ss_pred EecCCCCChHHHHHhHH-HHHHHHHHHHHhhc
Confidence 99999 9999999754 34445555555443
No 27
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=99.88 E-value=1.5e-21 Score=206.78 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=159.7
Q ss_pred CCCcEEEEcccCCCccEEEEeeCC--C---C-CCCeEEEEEEEecCCHHHHHHHhcCcc-chhhHhhcCceeeEEEeecC
Q 016753 99 GPTWIKMMDRSTETMSYQAWGRDP--K---T-GPPQYRTSTVYEDVTPELVRDFFWDDV-FRSKWDDMLAYSTTLEECPT 171 (383)
Q Consensus 99 ~~~Wel~~dk~~~~~~~kVwrR~~--~---s-gl~eyKa~~v~~d~spe~v~d~l~D~e-~R~~WD~~l~~~~~Le~~~~ 171 (383)
...|+++.- .||.+++..-. + . -.+.+|++|+++ ++||+|++++++.+ .|.+||.++.+.++||+++.
T Consensus 197 ~~~Wr~~~c----~NGlRiF~e~~~~~~~~~~~~~~mKavGVV~-aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~ 271 (719)
T PLN00188 197 RKHWRLLQC----QNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDG 271 (719)
T ss_pred cCCeEEEEe----eccceeehhhhccccccccCCceeEEEEEec-CCHHHHHHHHhccCcccccchhcccceEEEEEecC
Confidence 447999988 67899987721 1 1 147899999995 99999999999877 99999999999999999864
Q ss_pred CCcEEEEEEEe---ecccccccceEEEEEEEee-CCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCcc
Q 016753 172 TGTMVIQWIRK---FPFFCSDREYIIGRRIWKA-GTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQL 247 (383)
Q Consensus 172 ~g~~Ivy~~~K---~PwPvSdRDyV~~Rri~~~-~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~ 247 (383)
+++|+|.+.+ +|+.+++||||+.|++.+. |++|+|+.+|+.||.+|+++||||+.+..+||.|.|++.+++.
T Consensus 272 -htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~--- 347 (719)
T PLN00188 272 -HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGR--- 347 (719)
T ss_pred -CeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCC---
Confidence 5889999988 5568899999999876654 6779999999999999999999999999999999999765432
Q ss_pred ceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCCCChhHHhh
Q 016753 248 TACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRASGAPLSQPAFMA 306 (383)
Q Consensus 248 tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY~~~r~~~~~~s~~~~m~ 306 (383)
+.|.|+++.+.|++ +|.+.-++ .+.++--|.+-.+|+|+|..++...++..+...|.
T Consensus 348 ~r~lv~~~lqtDlkGW~~~y~~s~--~~~~~l~mL~~VAgLrE~~~~~~~~~~~~~~~~~~ 406 (719)
T PLN00188 348 PRTQVQHLMQIDLKGWGVGYIPSF--QQHCLLQMLNSVAGLREWFSQTDERGAPPRIPVMV 406 (719)
T ss_pred CceEEEEEEEEccCccccccCccc--cccchHHHHHHHHHHHHHHhcCcccCccccceeec
Confidence 46999999999999 88775532 22344455566788999988877666666655543
No 28
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.82 E-value=6.1e-20 Score=185.58 Aligned_cols=193 Identities=18% Similarity=0.343 Sum_probs=167.5
Q ss_pred CCCcEEEEcccCCCccEEEEeeC-CCCC--CCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcE
Q 016753 99 GPTWIKMMDRSTETMSYQAWGRD-PKTG--PPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTM 175 (383)
Q Consensus 99 ~~~Wel~~dk~~~~~~~kVwrR~-~~sg--l~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~ 175 (383)
.+.|+++.+ ...+++|+|. +++| +-..|+...+.++|+.+|+++|||.++|.+|+.+++.+.++|.+.. +..
T Consensus 402 d~nwqlFae----egemkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~rndwettle~~~vve~is~-d~~ 476 (611)
T KOG1739|consen 402 DANWQLFAE----EGEMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDVRNDWETTLENFHVVETISD-DAI 476 (611)
T ss_pred cchhhhhcc----cCCccccceeeccCCcccCccccchhhcchhHHHHHHHHcChhhhcchhhhhhhceeeeeecC-CeE
Confidence 446999999 4579999994 4456 4579999999999999999999999999999999999999999865 478
Q ss_pred EEEEEEeecccccccceEE---EEEEEe---e-CCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCcc-
Q 016753 176 VIQWIRKFPFFCSDREYII---GRRIWK---A-GTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQL- 247 (383)
Q Consensus 176 Ivy~~~K~PwPvSdRDyV~---~Rri~~---~-~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~- 247 (383)
|+|+..|--||.|+||-.| .|++-. + .+.+++.+.+++|.+.|.+++.||+..-.+..|-.-++...++..+
T Consensus 477 ~~~qthkrvwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p~~~q~l~ 556 (611)
T KOG1739|consen 477 IIYQTHKRVWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPPEGNQELS 556 (611)
T ss_pred EEEecccccCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCcccCCccc
Confidence 9999999999999999886 466542 3 3667788999999999999999999999999998887765554433
Q ss_pred ---ceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016753 248 ---TACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLRVYQKQRASGAPLS 300 (383)
Q Consensus 248 ---tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alrkY~~~r~~~~~~s 300 (383)
..|+++|..+.+|| .|.+..+.+.++..|+||+.+ ..|.+...+|+|++
T Consensus 557 rdd~~ckityvs~vnpggwapasalravykreypkflkrf----t~yv~~~~kgkpi~ 610 (611)
T KOG1739|consen 557 RDDILCKITYVSNVNPGGWAPASALRAVYKREYPKFLKRF----TSYVQEKTKGKPIL 610 (611)
T ss_pred ccceeEEEEEEeeeCCCCcccHHHHHHHHHhhhHHHHHHH----HHHHHHhcCCCCCc
Confidence 37999999999999 999999999999999999984 78888888999875
No 29
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.61 E-value=1.3e-14 Score=136.10 Aligned_cols=136 Identities=19% Similarity=0.162 Sum_probs=103.9
Q ss_pred HHHHHHHhcC--ccchhhHhhcCc--eeeEEEeecCCCc----EEEEEEEeecccccccceEEEEE-EEeeC--CEEEEE
Q 016753 140 PELVRDFFWD--DVFRSKWDDMLA--YSTTLEECPTTGT----MVIQWIRKFPFFCSDREYIIGRR-IWKAG--TDYYCV 208 (383)
Q Consensus 140 pe~v~d~l~D--~e~R~~WD~~l~--~~~~Le~~~~~g~----~Ivy~~~K~PwPvSdRDyV~~Rr-i~~~~--~~~~iv 208 (383)
.+++.+.+.+ .++-++|.+.+. +.++|+... +++ .|+|...+||||++|||||.... .+..+ +.++++
T Consensus 50 ~~~~~~~l~~~h~~~E~~~i~~v~~~~~~~l~~~~-~~~~~~~~v~~~~~~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~v 128 (208)
T cd08864 50 YQEFREGLRDTHTEYEKEYVHEIGAYDLEPVEVDG-EGDGVVTYLVQLTYKFPFPLSPRVFNELVHIKSDLDPASEFMVV 128 (208)
T ss_pred HHHHHhhhhHhHHhhhhhchhhhccceeEEeeecC-CCccceEEEEEEEEECCCCCCCcEEEEEEEeeccCCCCCeEEEE
Confidence 4444444433 557788999999 889998755 345 79999999999999999998876 45455 789999
Q ss_pred EcccCCCCCC-CCCCcEEeeeeeeeEEEEEeccC-CCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHH
Q 016753 209 TKGVPCNSVP-RRDKPRRVDLCYSSWCIRPVESR-RGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVK 280 (383)
Q Consensus 209 ~ksv~hp~~P-~~~g~VRV~~~~Sgw~Irpv~~~-~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lk 280 (383)
+.++.|+.+| +.+++||+. |.|+..|+..+.. ++.+ .++.+|..+.||| ||.|++|.++.+++-+=+.
T Consensus 129 s~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~---~vew~maT~sDpGG~IP~wl~n~~~p~aI~~Dv~ 200 (208)
T cd08864 129 SLPITPPLVESLYENAVLGR-YASVEKISYLPDADGKSN---KVEWIMATRSDAGGNIPRWLTKLTIPKAIAKDVP 200 (208)
T ss_pred EEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccCCCcC---CEEEEEEEeeCCCCcCcHHHHhccCchHHHHhHH
Confidence 9999999999 899999999 8888667766532 2122 2666666699999 9999999977765544443
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.23 E-value=5.4e-10 Score=106.21 Aligned_cols=194 Identities=19% Similarity=0.203 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcccCCCccEEEEee----CCC---CC--CCeEEEEEEEecCCHHHHHHHhcCccch
Q 016753 83 EEDLEHLWRLAEMKDGGPTWIKMMDRSTETMSYQAWGR----DPK---TG--PPQYRTSTVYEDVTPELVRDFFWDDVFR 153 (383)
Q Consensus 83 ~~Df~~~~~~~e~~~~~~~Wel~~dk~~~~~~~kVwrR----~~~---sg--l~eyKa~~v~~d~spe~v~d~l~D~e~R 153 (383)
++=+++|+++++.. ..-|....+-.....++.-|-+ ... .| .-.-|+.+++ ..++..+.++|+|.+..
T Consensus 9 ~~am~Ell~~a~~~--~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV-~m~~~~lVe~lmD~~kW 85 (229)
T cd08875 9 EEAMDELLKLAQGG--EPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLV-MMNAIKLVEILMDVNKW 85 (229)
T ss_pred HHHHHHHHHHhccC--CCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEE-ecCHHHHHHHHhChhhh
Confidence 45577888887653 3469987663210012222323 111 12 2357889999 59999999999997655
Q ss_pred hh-HhhcCceeeEEEeecCC------C-cEEEEEEEeecccc-cccceEEEEEEEe-eCCEEEEEEcccCCC-CCCCCCC
Q 016753 154 SK-WDDMLAYSTTLEECPTT------G-TMVIQWIRKFPFFC-SDREYIIGRRIWK-AGTDYYCVTKGVPCN-SVPRRDK 222 (383)
Q Consensus 154 ~~-WD~~l~~~~~Le~~~~~------g-~~Ivy~~~K~PwPv-SdRDyV~~Rri~~-~~~~~~iv~ksv~hp-~~P~~~g 222 (383)
.+ .+..+...++++.++.. | -+++|...+.|-|+ ..|||.+.|...+ +++.+.|+.+|+++. ..|..++
T Consensus 86 ~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~ 165 (229)
T cd08875 86 SELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPAS 165 (229)
T ss_pred hhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccccCCCCCC
Confidence 55 55599999999987642 2 35899999999977 8999999987654 478899999999988 6888899
Q ss_pred cEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC------CCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 223 PRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG------IPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 223 ~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG------IP~~laN~~~~~g~p~~lkkL~~al 286 (383)
++|.+...|||.|++.+ ||. |+|+.+-|.|.. +|..+++.+...|.-.++..|...|
T Consensus 166 ~~r~~~~PSGcLIq~~~----nG~---SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqc 228 (229)
T cd08875 166 FVRCRRLPSGCLIQDMP----NGY---SKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQC 228 (229)
T ss_pred ccEEEEecCcEEEEECC----CCc---eEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999997 453 999999998833 9999999999999999988876544
No 31
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.12 E-value=1.4e-09 Score=93.53 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=104.6
Q ss_pred EEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEEEEEE
Q 016753 130 RTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVT 209 (383)
Q Consensus 130 Ka~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~~iv~ 209 (383)
+.+..+ +++++++++++.|.+..++|++.+.+.++++... ....+++..++| ..+|+|+...++. .++.+ -.
T Consensus 2 ~~s~~i-~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~i--~~ 73 (138)
T cd07813 2 SKSRLV-PYSAEQMFDLVADVERYPEFLPWCTASRVLERDE--DELEAELTVGFG--GIRESFTSRVTLV-PPESI--EA 73 (138)
T ss_pred eEEEEc-CCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC--CEEEEEEEEeec--cccEEEEEEEEec-CCCEE--EE
Confidence 456677 5999999999999999999999999999998543 335667766665 5699998765543 24433 22
Q ss_pred cccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHHHHH
Q 016753 210 KGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEPGLR 287 (383)
Q Consensus 210 ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~alr 287 (383)
.+++. ++..+.+.|.++|+.+ |. |+|+|..+-+|+ ||.|++|.++.+.+.+.++.+++.|+
T Consensus 74 ~~~~g----------~~~~~~g~w~~~p~~~----~~---T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 74 ELVDG----------PFKHLEGEWRFKPLGE----NA---CKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred EecCC----------ChhhceeEEEEEECCC----CC---EEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23322 4567889999999962 32 899999999999 89999999999999999999988876
Q ss_pred H
Q 016753 288 V 288 (383)
Q Consensus 288 k 288 (383)
+
T Consensus 137 ~ 137 (138)
T cd07813 137 Q 137 (138)
T ss_pred h
Confidence 4
No 32
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.94 E-value=5.6e-08 Score=89.78 Aligned_cols=139 Identities=22% Similarity=0.200 Sum_probs=107.5
Q ss_pred cCCHHHHHHHhcC--ccchhhHhhcCceeeEEEeec--------CCCc-EEEEEEEeecccccccceEEEEEEEee----
Q 016753 137 DVTPELVRDFFWD--DVFRSKWDDMLAYSTTLEECP--------TTGT-MVIQWIRKFPFFCSDREYIIGRRIWKA---- 201 (383)
Q Consensus 137 d~spe~v~d~l~D--~e~R~~WD~~l~~~~~Le~~~--------~~g~-~Ivy~~~K~PwPvSdRDyV~~Rri~~~---- 201 (383)
+++-+++.+.+.+ .++=++....+...+.++..+ .++. .+.....|||+|+++|||+...-....
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~kfp~pl~~R~F~~Lvit~~~~~~~ 92 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYKFPGPLSPRVFVVLVITADLPSKT 92 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeECCCCCCCcEEEEEEEEeccCccc
Confidence 6888999988876 456677888888888888762 1233 477888999999999999965433221
Q ss_pred ------CCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCC---CCCccceEEEEEEEEecCC--CCHHHHHHH
Q 016753 202 ------GTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRR---GNGQLTACEVILFHHEDMG--IPREIAKLG 270 (383)
Q Consensus 202 ------~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~---~~G~~tac~V~~~~~~DPG--IP~~laN~~ 270 (383)
.+.+++++..++|+..|+.+++||+. |.|-=.||.++... ..| ..+=+|....||| ||.|+.+++
T Consensus 93 ~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~-Y~SVE~ire~p~~~~~~~~~---~veW~MaT~SdaGG~IP~w~q~~~ 168 (184)
T PF11274_consen 93 EDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQ-YESVERIRELPDTKDDDEEG---PVEWIMATRSDAGGSIPRWMQEMG 168 (184)
T ss_pred cCCCCCCCeEEEEEEEcCCcccCCCCCCEEEE-EEEEEEEEEccCCCCCCCCC---cEEEEEEEeeCCCCcccHHHHhcc
Confidence 47799999999999999999999996 88888888885322 223 3889999999999 999999996
Q ss_pred HhhhHHHHH
Q 016753 271 IRQGMWGAV 279 (383)
Q Consensus 271 ~~~g~p~~l 279 (383)
+..++-+=+
T Consensus 169 ~p~~Ia~DV 177 (184)
T PF11274_consen 169 TPGAIAKDV 177 (184)
T ss_pred CcHHHHHHH
Confidence 665544433
No 33
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.92 E-value=1e-07 Score=81.93 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=91.5
Q ss_pred EEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeeccccc-ccceEEEEEEEeeCCEEEEE
Q 016753 130 RTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCS-DREYIIGRRIWKAGTDYYCV 208 (383)
Q Consensus 130 Ka~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvS-dRDyV~~Rri~~~~~~~~iv 208 (383)
+++..+ +++|+.|++++.|.+...+|++.+.+.++++.. ++...+++......... -+.-+. .++...+
T Consensus 2 ~~~~~i-~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~------ 71 (144)
T cd08866 2 VARVRV-PAPPETVWAVLTDYDNLAEFIPNLAESRLLERN--GNRVVLEQTGKQGILFFKFEARVV-LELRERE------ 71 (144)
T ss_pred eEEEEE-CCCHHHHHHHHhChhhHHhhCcCceEEEEEEcC--CCEEEEEEeeeEEEEeeeeeEEEE-EEEEEec------
Confidence 567888 499999999999999999999999999999752 22334555433221100 000010 1111111
Q ss_pred EcccCCCCCCCCCCcEEe-------eeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHH
Q 016753 209 TKGVPCNSVPRRDKPRRV-------DLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAV 279 (383)
Q Consensus 209 ~ksv~hp~~P~~~g~VRV-------~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~l 279 (383)
..++.+|+ ..+.+.|.++|..+. | .|.|+|..+.+|+ +|.+++|.++.+.++..|
T Consensus 72 ----------~~~~~i~~~~~~g~~~~~~g~w~~~~~~~~---~---~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l 135 (144)
T cd08866 72 ----------EFPRELDFEMVEGDFKRFEGSWRLEPLADG---G---GTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNL 135 (144)
T ss_pred ----------CCCceEEEEEcCCchhceEEEEEEEECCCC---C---eEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 01222333 578999999998631 2 2899999999999 999999999999999999
Q ss_pred HHHHHHHH
Q 016753 280 KKIEPGLR 287 (383)
Q Consensus 280 kkL~~alr 287 (383)
+.|++.+.
T Consensus 136 ~~lr~~ae 143 (144)
T cd08866 136 LAIRAEAE 143 (144)
T ss_pred HHHHHHHh
Confidence 99988764
No 34
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.76 E-value=5.4e-07 Score=76.34 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=93.4
Q ss_pred eEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCc-EEEEEEEeecccccccceEEEEEEEeeCCEEE
Q 016753 128 QYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGT-MVIQWIRKFPFFCSDREYIIGRRIWKAGTDYY 206 (383)
Q Consensus 128 eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~-~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~~ 206 (383)
.+.....+ +++|++|++++.|.+...+|.+.+.+.++++..+ ++. ...+.....+ +++. +|+...... .+..+
T Consensus 3 ~v~~s~~i-~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~~~i- 76 (140)
T cd07819 3 KVSREFEI-EAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDN-DGRPEMVRIGVGAY-GIKD-TYALEYTWD-GAGSV- 76 (140)
T ss_pred eEEEEEEE-eCCHHHHHHHHhChhhhhhhCcceEEEEEeccCC-CCCEEEEEEEEeee-eEEE-EEEEEEEEc-CCCcE-
Confidence 45567788 5999999999999999999999988888876432 232 2344444433 4444 666433221 12222
Q ss_pred EEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHHH
Q 016753 207 CVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIEP 284 (383)
Q Consensus 207 iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~~ 284 (383)
..+..+. .+...+.+.|.+.|.. +| |.|+|..+.+++ +|.+++|.+.+.....++++|++
T Consensus 77 -~~~~~~~---------~~~~~~~~~~~~~~~~----~~----t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (140)
T cd07819 77 -SWTLVEG---------EGNRSQEGSYTLTPKG----DG----TRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKK 138 (140)
T ss_pred -EEEEecc---------cceeEEEEEEEEEECC----CC----EEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhh
Confidence 1122211 1455677889999984 23 899999999988 99999999999999999999875
Q ss_pred H
Q 016753 285 G 285 (383)
Q Consensus 285 a 285 (383)
.
T Consensus 139 ~ 139 (140)
T cd07819 139 R 139 (140)
T ss_pred h
Confidence 4
No 35
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.61 E-value=2.1e-06 Score=73.01 Aligned_cols=135 Identities=8% Similarity=-0.040 Sum_probs=93.8
Q ss_pred eEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe-e-CCEE
Q 016753 128 QYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK-A-GTDY 205 (383)
Q Consensus 128 eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~-~-~~~~ 205 (383)
+++.+..+ +++|++|++++.|.+...+|.+.+.+.+.++ ++...++...+. +|++.|.- ..-++.+ + ++.+
T Consensus 2 ~~~~~~~i-~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 74 (144)
T cd05018 2 KISGEFRI-PAPPEEVWAALNDPEVLARCIPGCESLEKIG----PNEYEATVKLKV-GPVKGTFK-GKVELSDLDPPESY 74 (144)
T ss_pred eeeeEEEe-cCCHHHHHHHhcCHHHHHhhccchhhccccC----CCeEEEEEEEEE-ccEEEEEE-EEEEEEecCCCcEE
Confidence 57788899 5999999999999999999999777765553 234445555555 45555533 2222322 2 2333
Q ss_pred EEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC-----CCHHHHHHHHhhhHHHHHH
Q 016753 206 YCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG-----IPREIAKLGIRQGMWGAVK 280 (383)
Q Consensus 206 ~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG-----IP~~laN~~~~~g~p~~lk 280 (383)
.+...+. .+ .+...+...|.++|.+ +| |+|+|..+.+++ +|.+++|.++++.+..+++
T Consensus 75 ~~~~~~~-~~--------~~~~~~~~~~~l~~~~----~g----T~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~ 137 (144)
T cd05018 75 TITGEGK-GG--------AGFVKGTARVTLEPDG----GG----TRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFE 137 (144)
T ss_pred EEEEEEc-CC--------CceEEEEEEEEEEecC----Cc----EEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHH
Confidence 3332221 11 2334688899998872 23 899999999977 5999999999999999999
Q ss_pred HHHHHH
Q 016753 281 KIEPGL 286 (383)
Q Consensus 281 kL~~al 286 (383)
+|++.+
T Consensus 138 ~l~~~~ 143 (144)
T cd05018 138 NLASKI 143 (144)
T ss_pred HHHHhh
Confidence 998764
No 36
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.27 E-value=6.6e-05 Score=63.44 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=89.0
Q ss_pred cCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEEEEEEcccCCCC
Q 016753 137 DVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNS 216 (383)
Q Consensus 137 d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~~iv~ksv~hp~ 216 (383)
++++++|++++.|.+..++|.+.+.+.++|+...+ ....++ +..+....+.|........... +..+.+
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---- 70 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD--GMRARW--EVKFGGIKRSWTSRVTEDPPER---IRFEQI---- 70 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC--EEEEEE--EECTTTTCEEEEEEEEEECTTT---EEEESS----
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC--eEEEEE--EEecCCEEEEEEEEEEEEEeee---eeeeec----
Confidence 59999999999999999999999999999986432 233333 3344344566654332222222 222211
Q ss_pred CCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHH
Q 016753 217 VPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIE 283 (383)
Q Consensus 217 ~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~ 283 (383)
.|. ...+.+.|.++|..+.+ +| +.|.+++.+.-+|+ +|.++++.+..+.....+++|+
T Consensus 71 ----~g~--~~~~~g~W~~~~~~~~~-~g--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 71 ----SGP--FKSFEGSWRFEPLGGNE-GG--TRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp ----ETT--EEEEEEEEEEEEETTEC-CE--EEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCC--chhcEEEEEEEECCCCc-CC--CEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 122 46789999999997411 13 36899999999888 9999999999999999988874
No 37
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.04 E-value=0.00029 Score=59.14 Aligned_cols=133 Identities=17% Similarity=0.129 Sum_probs=86.7
Q ss_pred eEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe--eC-CE
Q 016753 128 QYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK--AG-TD 204 (383)
Q Consensus 128 eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~--~~-~~ 204 (383)
.++.+.++ ++|+++|++++.|.+...+|...+.+.+.++..+..|. +.. ..++.. + .+.-++.. .. ..
T Consensus 2 ~i~~~~~i-~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~-~~~--~~~~~g---~--~~~~~i~~~~~~~~~ 72 (140)
T cd07821 2 KVTVSVTI-DAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGA-VRT--VTLKDG---G--TVRERLLALDDAERR 72 (140)
T ss_pred cEEEEEEE-CCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCe-EEE--EEeCCC---C--EEEEEehhcCccCCE
Confidence 46778899 59999999999999999999998777776653211132 222 222211 2 22222221 12 22
Q ss_pred EEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHH
Q 016753 205 YYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKI 282 (383)
Q Consensus 205 ~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL 282 (383)
+..- ...- ..++..+.+.|.+.|.. +|. |+|++.++-++. +|.++++.++...+-..|++|
T Consensus 73 i~~~--~~~~--------~~~~~~~~~~~~~~~~~----~~~---t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 135 (140)
T cd07821 73 YSYR--IVEG--------PLPVKNYVATIRVTPEG----DGG---TRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAAL 135 (140)
T ss_pred EEEE--ecCC--------CCCcccceEEEEEEECC----CCc---cEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 2211 1110 11234567889999875 222 899999988877 899999999999999999999
Q ss_pred HHHH
Q 016753 283 EPGL 286 (383)
Q Consensus 283 ~~al 286 (383)
++.|
T Consensus 136 ~~~~ 139 (140)
T cd07821 136 KAAL 139 (140)
T ss_pred HHhh
Confidence 8765
No 38
>PRK10724 hypothetical protein; Provisional
Probab=97.93 E-value=0.00043 Score=62.42 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=94.0
Q ss_pred CCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEE
Q 016753 126 PPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDY 205 (383)
Q Consensus 126 l~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~ 205 (383)
...++.+.+++ +|++++++++.|.+.+++|-+.+.+.++++..+ +..+..+...+.- + ...|+...++ ..++.
T Consensus 14 M~~i~~~~~v~-~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~--~~~~a~l~v~~~g-~-~~~f~srv~~-~~~~~- 86 (158)
T PRK10724 14 MPQISRTALVP-YSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTP--GQMTAAVDVSKAG-I-SKTFTTRNQL-TSNQS- 86 (158)
T ss_pred CCeEEEEEEec-CCHHHHHHHHHHHHHHHHhCcccCeEEEEEecC--CEEEEEEEEeeCC-c-cEEEEEEEEe-cCCCE-
Confidence 55788899995 999999999999999999999999999998643 2334444444442 2 4455554433 23332
Q ss_pred EEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHH
Q 016753 206 YCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIE 283 (383)
Q Consensus 206 ~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~ 283 (383)
|-...++.| .+...+.|.++|++. | +|+|.|.+.-+.+ ++..+++.+.....-..++.++
T Consensus 87 -I~~~~~~Gp----------F~~l~g~W~f~p~~~----~---~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 87 -ILMQLVDGP----------FKKLIGGWKFTPLSQ----E---ACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFT 148 (158)
T ss_pred -EEEEecCCC----------hhhccceEEEEECCC----C---CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333222 446899999999962 2 2999999988887 7777777777765555555555
Q ss_pred HHHH
Q 016753 284 PGLR 287 (383)
Q Consensus 284 ~alr 287 (383)
+.++
T Consensus 149 ~Ra~ 152 (158)
T PRK10724 149 VRAK 152 (158)
T ss_pred HHHH
Confidence 5443
No 39
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.87 E-value=0.00072 Score=57.15 Aligned_cols=129 Identities=16% Similarity=0.082 Sum_probs=81.3
Q ss_pred EEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEEEEEE
Q 016753 130 RTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVT 209 (383)
Q Consensus 130 Ka~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~~iv~ 209 (383)
..+..| ++|++.|++++.|.+..++|.+.+.+.+.+.. . ...+..+.|+ ...++|+....-...++. +..
T Consensus 3 ~~~i~I-~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~---~---~~~~~~~~~~-g~~~~~~~~v~~~~~~~~--i~~ 72 (139)
T cd07817 3 EKSITV-NVPVEEVYDFWRDFENLPRFMSHVESVEQLDD---T---RSHWKAKGPA-GLSVEWDAEITEQVPNER--IAW 72 (139)
T ss_pred eEEEEe-CCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC---C---ceEEEEecCC-CCcEEEEEEEeccCCCCE--EEE
Confidence 456778 69999999999999999999998777666531 1 2345557777 466777653211112332 222
Q ss_pred cccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--CCH----HHHHHHHhhhHHHHHHHHH
Q 016753 210 KGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPR----EIAKLGIRQGMWGAVKKIE 283 (383)
Q Consensus 210 ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~----~laN~~~~~g~p~~lkkL~ 283 (383)
.....+ . ...+.|.+++..+ +| |+|+|..+.+|. ++. .+++.++++.+...|++|+
T Consensus 73 ~~~~~~-~----------~~~~~~~f~~~~~---~~----T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 134 (139)
T cd07817 73 RSVEGA-D----------PNAGSVRFRPAPG---RG----TRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFK 134 (139)
T ss_pred EECCCC-C----------CcceEEEEEECCC---CC----eEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 222211 1 2446677777642 22 899999888876 665 4456666666666676665
Q ss_pred HHH
Q 016753 284 PGL 286 (383)
Q Consensus 284 ~al 286 (383)
+.+
T Consensus 135 ~~a 137 (139)
T cd07817 135 QLV 137 (139)
T ss_pred HHh
Confidence 543
No 40
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.47 E-value=0.006 Score=52.08 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=77.5
Q ss_pred EEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEE---EEee-CCEEEE
Q 016753 132 STVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRR---IWKA-GTDYYC 207 (383)
Q Consensus 132 ~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rr---i~~~-~~~~~i 207 (383)
..++ ++++++|++++.|.+...+|.+. ...+.++.. .+...++. |++..+...+... .... +..+..
T Consensus 4 s~~i-~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~--~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~i~~ 74 (142)
T cd08861 4 SVTV-AAPAEDVYDLLADAERWPEFLPT-VHVERLELD--GGVERLRM-----WATAFDGSVHTWTSRRVLDPEGRRIVF 74 (142)
T ss_pred EEEE-cCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEc--CCEEEEEE-----EEEcCCCcEEEEEEEEEEcCCCCEEEE
Confidence 5677 69999999999999999999997 677777642 12223331 3333333333221 1112 223211
Q ss_pred EEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--C--CHHHHHHHHhhhHHHHHHHHH
Q 016753 208 VTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--I--PREIAKLGIRQGMWGAVKKIE 283 (383)
Q Consensus 208 v~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--I--P~~laN~~~~~g~p~~lkkL~ 283 (383)
..... + -+...+.+.|.++|... | +|.|+|...-+++ + +..++..+..+.+...|..|+
T Consensus 75 ~~~~~--~--------~~~~~~~g~w~~~~~~~----~---~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 137 (142)
T cd08861 75 RQEEP--P--------PPVASMSGEWRFEPLGG----G---GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALR 137 (142)
T ss_pred EEeeC--C--------CChhhheeEEEEEECCC----C---cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHH
Confidence 11111 0 13557788999999852 2 2899999988888 3 334555556666666666665
Q ss_pred HHH
Q 016753 284 PGL 286 (383)
Q Consensus 284 ~al 286 (383)
+.+
T Consensus 138 ~~~ 140 (142)
T cd08861 138 AAA 140 (142)
T ss_pred HHh
Confidence 544
No 41
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.36 E-value=0.015 Score=51.58 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=86.7
Q ss_pred EEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEEEEEEcc
Q 016753 132 STVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYCVTKG 211 (383)
Q Consensus 132 ~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~~iv~ks 211 (383)
+.++ +++|++|++++-|.+..++|.+.+.+.++++... + ........+++-..-...|+..+.. +.....+..+.
T Consensus 6 si~i-~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~-~-~~~~r~~i~~~~~g~~~~w~s~~~~--~~~~~~i~~~~ 80 (146)
T cd08860 6 SIVI-DAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDG-D-TVRFRLTMHPDANGTVWSWVSERTL--DPVNRTVRARR 80 (146)
T ss_pred EEEE-cCCHHHHHHHHHhhhhhhhhccceEEEEEEEecC-C-eEEEEEEEEeccCCEEEEEEEEEEe--cCCCcEEEEEE
Confidence 4566 6999999999999999999999999999988522 2 2233343344322112333332222 22223333322
Q ss_pred cCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEec-C-C--CCHHHHHHHHhhhHHHHHHHHHHHHH
Q 016753 212 VPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHED-M-G--IPREIAKLGIRQGMWGAVKKIEPGLR 287 (383)
Q Consensus 212 v~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~D-P-G--IP~~laN~~~~~g~p~~lkkL~~alr 287 (383)
. +..| .....+.|.++|++ +| |+|+|.+.-. . + ++..++..++.+.....|+.|++.+.
T Consensus 81 ~--~~~p-------~~~m~~~W~f~~~~----~g----T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE 143 (146)
T cd08860 81 V--ETGP-------FAYMNIRWEYTEVP----EG----TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIE 143 (146)
T ss_pred e--cCCC-------cceeeeeEEEEECC----CC----EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhh
Confidence 2 1111 23677889999984 24 7898888444 4 3 55777888899999999999987765
Q ss_pred H
Q 016753 288 V 288 (383)
Q Consensus 288 k 288 (383)
+
T Consensus 144 ~ 144 (146)
T cd08860 144 A 144 (146)
T ss_pred h
Confidence 3
No 42
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.11 E-value=0.098 Score=43.68 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=76.0
Q ss_pred eEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEEEE
Q 016753 128 QYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYC 207 (383)
Q Consensus 128 eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~~i 207 (383)
.+..+..+ +++|+.+++++.|.+...+|.+.+...+.++. ++. -..+....... ..+......++.++..+.
T Consensus 3 ~~~~~~~v-~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~---~~~-~~~~~~~~~g~---~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 3 KVEVSIEV-PAPPEAVWDLLSDPENWPRWWPGVKSVELLSG---GGP-GTERTVRVAGR---GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp EEEEEEEE-SS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE---CST-EEEEEEEECSC---SEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEE-CCCHHHHHHHHhChhhhhhhhhceEEEEEccc---ccc-ceeEEEEeccc---cceeEEEEEecCCCcEEE
Confidence 45667888 49999999999999999999997777766651 233 22233332221 112222222233133332
Q ss_pred EEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCCCCHH----HHHHHHhhhHHHHHHHHH
Q 016753 208 VTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPRE----IAKLGIRQGMWGAVKKIE 283 (383)
Q Consensus 208 v~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPGIP~~----laN~~~~~g~p~~lkkL~ 283 (383)
..- +.. + +..+...|.+.|.. +| |.|++..+-++++|.+ ++..++...+-..|++|+
T Consensus 75 ~~~-~~~-------~---~~~~~~~~~~~~~~----~g----t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 135 (139)
T PF10604_consen 75 WRF-VPS-------G---FTNGTGRWRFEPVG----DG----TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLK 135 (139)
T ss_dssp EEE-ESS-------S---SCEEEEEEEEEEET----TT----EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-Eec-------c---eeEEEEEEEEEEcC----CC----EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 221 111 1 12467779998874 34 7899888888754444 455555555556666655
Q ss_pred HHH
Q 016753 284 PGL 286 (383)
Q Consensus 284 ~al 286 (383)
+.+
T Consensus 136 ~~~ 138 (139)
T PF10604_consen 136 RAA 138 (139)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 43
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.06 E-value=0.045 Score=44.04 Aligned_cols=131 Identities=12% Similarity=0.082 Sum_probs=74.7
Q ss_pred EEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEee--CCEEEE
Q 016753 130 RTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKA--GTDYYC 207 (383)
Q Consensus 130 Ka~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~--~~~~~i 207 (383)
+.+..++ +++++|++++.|.+...+|...+...+.++.. .......+...+. +....++.. ++... +..+..
T Consensus 2 ~~~~~i~-a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~--~v~~~~~~~~~~~ 75 (141)
T cd07812 2 EASIEIP-APPEAVWDLLSDPERWPEWSPGLERVEVLGGG--EGGVGARFVGGRK-GGRRLTLTS--EVTEVDPPRPGRF 75 (141)
T ss_pred cEEEEeC-CCHHHHHHHHhChhhhhhhCcccceEEEcCCC--CccceeEEEEEec-CCccccceE--EEEEecCCCceEE
Confidence 4567784 99999999999999999999987777766531 1111122222211 111122222 22211 111111
Q ss_pred EEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--C---CHHHHHHHHhhhHHHHHHHH
Q 016753 208 VTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--I---PREIAKLGIRQGMWGAVKKI 282 (383)
Q Consensus 208 v~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--I---P~~laN~~~~~g~p~~lkkL 282 (383)
...+.+++ ......|.+.+..+ +| |++++.+..++. + +..+++.++......+++++
T Consensus 76 ~~~~~~~~-----------~~~~~~~~~~~~~~---~~----t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T cd07812 76 RVTGGGGG-----------VDGTGEWRLEPEGD---GG----TRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRAL 137 (141)
T ss_pred EEecCCCC-----------cceeEEEEEEECCC---Cc----EEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHH
Confidence 11111111 46778898888852 13 789988888877 3 45666666666666666665
Q ss_pred HH
Q 016753 283 EP 284 (383)
Q Consensus 283 ~~ 284 (383)
+.
T Consensus 138 ~~ 139 (141)
T cd07812 138 KA 139 (141)
T ss_pred Hh
Confidence 43
No 44
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.68 E-value=0.11 Score=45.07 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=73.5
Q ss_pred eEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEe-ecCCCcEEEEEEEeecccccccceEEEEEEEe-eCCEE
Q 016753 128 QYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEE-CPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK-AGTDY 205 (383)
Q Consensus 128 eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~-~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~-~~~~~ 205 (383)
.|-....| ++|||.|++++.|.+...+|.+.+.+.+.++. ....-.....+...-+.+ .++.+.-++.+ +....
T Consensus 2 ~~~~~~~i-~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 2 RFHTVWRI-PAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLP---YRLRFELRVTRIEPLSL 77 (146)
T ss_pred cceEEEEe-cCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCC---cEEEEEEEEEeecCCcE
Confidence 35567788 59999999999999999999998877777762 211111122221111212 12222222222 22323
Q ss_pred EEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC---------CCHHHHHHHHhhhHH
Q 016753 206 YCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG---------IPREIAKLGIRQGMW 276 (383)
Q Consensus 206 ~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG---------IP~~laN~~~~~g~p 276 (383)
+.+. . ..+ .+ ....|.|++.+ +| |.|++....+.+ |...+++.+.++.+.
T Consensus 78 ~~~~-~-~g~--------~~---~~~~~~~~~~~----~g----t~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 136 (146)
T cd07824 78 LEVR-A-SGD--------LE---GVGRWTLAPDG----SG----TVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMR 136 (146)
T ss_pred EEEE-E-EEe--------ee---EEEEEEEEEcC----CC----EEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHH
Confidence 3322 1 111 11 24668787752 34 899999877763 445555566666666
Q ss_pred HHHHHHHH
Q 016753 277 GAVKKIEP 284 (383)
Q Consensus 277 ~~lkkL~~ 284 (383)
.++++|+.
T Consensus 137 ~~~~~L~~ 144 (146)
T cd07824 137 AGEKGLAR 144 (146)
T ss_pred hHHHHHHh
Confidence 66665543
No 45
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.53 E-value=0.3 Score=40.53 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=71.9
Q ss_pred EEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecC-CCcEEEEEEEee-cccccccceEEEEEEEe-eCCEEEE
Q 016753 131 TSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPT-TGTMVIQWIRKF-PFFCSDREYIIGRRIWK-AGTDYYC 207 (383)
Q Consensus 131 a~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~-~g~~Ivy~~~K~-PwPvSdRDyV~~Rri~~-~~~~~~i 207 (383)
.+..+ ++|+++|++++.|.+...+|.+.+...+.+...+. .|.. +.+...+ +..+ -..-++.. +.+..+.
T Consensus 3 ~~~~i-~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~-~~~~~~~~g~~~-----~~~~~v~~~~p~~~~~ 75 (140)
T cd08865 3 ESIVI-ERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTR-YHQVRKFLGRRI-----ELTYEITEYEPGRRVV 75 (140)
T ss_pred eEEEE-cCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccE-EEEEEEecCceE-----EEEEEEEEecCCcEEE
Confidence 35667 59999999999999999999997776666543211 1332 3333332 1211 11111221 2222222
Q ss_pred EEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCCCC----HHHHHHHHhhhHHHHHHHHH
Q 016753 208 VTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIP----REIAKLGIRQGMWGAVKKIE 283 (383)
Q Consensus 208 v~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPGIP----~~laN~~~~~g~p~~lkkL~ 283 (383)
.. ... +.+ .+...|.+.+.+ +| |.+++....+++.+ ..++..+++..+-.++++|+
T Consensus 76 ~~-~~~--------~~~---~~~~~~~~~~~~----~~----t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 135 (140)
T cd08865 76 FR-GSS--------GPF---PYEDTYTFEPVG----GG----TRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLK 135 (140)
T ss_pred EE-ecC--------CCc---ceEEEEEEEEcC----Cc----eEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 21 111 112 256778888874 23 78998888887733 34455555555566666655
Q ss_pred HHH
Q 016753 284 PGL 286 (383)
Q Consensus 284 ~al 286 (383)
+.+
T Consensus 136 ~~~ 138 (140)
T cd08865 136 ALL 138 (140)
T ss_pred HHh
Confidence 443
No 46
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=96.52 E-value=0.24 Score=41.55 Aligned_cols=132 Identities=13% Similarity=0.090 Sum_probs=73.9
Q ss_pred eEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEEEE
Q 016753 128 QYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYYC 207 (383)
Q Consensus 128 eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~~i 207 (383)
.+..+..| ++|++.|++++.|.+...+|.+.+...+.+......|.. +....+.. ..+.+.-.-...+..+..
T Consensus 2 ~~~~~~~i-~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~---~~~~~~~~---~~~~~~i~~~~p~~~~~~ 74 (138)
T cd08862 2 KFEATIVI-DAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSS---FKMKPPGL---VRSTFTVTELRPGHSFTW 74 (138)
T ss_pred EEEEEEEE-cCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcE---EEEecCCC---CceEEEEEEecCCCEEEE
Confidence 35567788 599999999999999999999977666665432122332 22222221 112211111111232222
Q ss_pred EEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC---CCHHHHHHHHhhhHHHHHHHHHH
Q 016753 208 VTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG---IPREIAKLGIRQGMWGAVKKIEP 284 (383)
Q Consensus 208 v~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG---IP~~laN~~~~~g~p~~lkkL~~ 284 (383)
. +.. + .......|.+.+..+ +| |++++.+.-... +...++..++.+++...|++|++
T Consensus 75 ~--~~~----~-------~~~~~~~~~~~~~~~---~~----t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~ 134 (138)
T cd08862 75 T--GPA----P-------GISAVHRHEFEAKPD---GG----VRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKA 134 (138)
T ss_pred E--ecC----C-------CEEEEEEEEEEEcCC---Cc----EEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 110 1 123446888887641 22 788876643322 33456666777788888888776
Q ss_pred HH
Q 016753 285 GL 286 (383)
Q Consensus 285 al 286 (383)
.+
T Consensus 135 ~~ 136 (138)
T cd08862 135 AA 136 (138)
T ss_pred Hh
Confidence 54
No 47
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.31 E-value=0.3 Score=40.67 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=72.1
Q ss_pred EEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe-eCCEEEE
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK-AGTDYYC 207 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~-~~~~~~i 207 (383)
+..+.+| ++|+++|++++.|.+...+|...+...+... ...|..+.+ ..+.+- .+.+...-.+.+ +....+.
T Consensus 2 v~~~~~i-~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~--~~~G~~~~~-~~~~~~---~~~~~~~~~v~~~~p~~~~~ 74 (141)
T cd07822 2 ISTEIEI-NAPPEKVWEVLTDFPSYPEWNPFVRSATGLS--LALGARLRF-VVKLPG---GPPRSFKPRVTEVEPPRRLA 74 (141)
T ss_pred eEEEEEe-cCCHHHHHHHHhccccccccChhheeEeccc--cCCCCEEEE-EEeCCC---CCcEEEEEEEEEEcCCCEeE
Confidence 4567788 5999999999999999999997554433321 234554433 333331 122333222222 2222222
Q ss_pred EEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCCCCHHHHHHHHhhhHHHHHHHHHHHHH
Q 016753 208 VTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGLR 287 (383)
Q Consensus 208 v~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPGIP~~laN~~~~~g~p~~lkkL~~alr 287 (383)
.. ....+ -+.......|.+.+.+. +| |++++.+ .-.|.+..+.-......+-.-++++...++
T Consensus 75 ~~-~~~~~--------~~~~~~~~~~~~~~~~~---~~----T~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~ 137 (141)
T cd07822 75 WR-GGLPF--------PGLLDGEHSFELEPLGD---GG----TRFVHRE-TFSGLLAPLVLLGLGRDLRAGFEAMNEALK 137 (141)
T ss_pred EE-ecCCC--------CcEeeEEEEEEEEEcCC---Cc----EEEEEee-EEEEEEhHHhhhhhHHHHhHhHHHHHHHHH
Confidence 22 11111 00123456787887631 22 7887653 334555555555555555555555555555
Q ss_pred HH
Q 016753 288 VY 289 (383)
Q Consensus 288 kY 289 (383)
+|
T Consensus 138 ~~ 139 (141)
T cd07822 138 AR 139 (141)
T ss_pred Hh
Confidence 44
No 48
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.75 E-value=1.9 Score=36.87 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=70.6
Q ss_pred EEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEee-----cCCCcEEEEEEEeecccccccceEEEEEEEeeCC
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEEC-----PTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGT 203 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~-----~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~ 203 (383)
+..+.+| ++|+++|++++.|.+...+|++.+...+.++.. ...|.. +.|..+.. . ....+.+ .. +..+.
T Consensus 4 ~~~s~~I-~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~~-~-~~~~~~v-~~-~~p~~ 77 (150)
T cd07818 4 VERSIVI-NAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGAS-YSWEGNDK-V-GEGEMEI-TE-SVPNE 77 (150)
T ss_pred EEEEEEE-eCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeE-EEEecCCc-c-cceEEEE-Ee-cCCCc
Confidence 4567788 599999999999999999999966655444321 111322 23332221 0 0111111 11 11122
Q ss_pred EEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--CCH----HHHHHHHhhhHHH
Q 016753 204 DYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPR----EIAKLGIRQGMWG 277 (383)
Q Consensus 204 ~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~----~laN~~~~~g~p~ 277 (383)
.+....... . |. . ......|.+.|.. .| |+|++.+.-+.. .+. .++..++++.+..
T Consensus 78 ~i~~~~~~~-~---~~----~--~~~~~~~~~~~~~----~g----T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (150)
T cd07818 78 RIEYELRFI-K---PF----E--ATNDVEFTLEPVG----GG----TKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEK 139 (150)
T ss_pred EEEEEEEec-C---Cc----c--ccceEEEEEEEcC----Cc----eEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHH
Confidence 221111100 1 10 0 2456788888873 23 899988776644 332 4445555556666
Q ss_pred HHHHHHHHH
Q 016753 278 AVKKIEPGL 286 (383)
Q Consensus 278 ~lkkL~~al 286 (383)
.|++|++.+
T Consensus 140 ~l~~lk~~~ 148 (150)
T cd07818 140 GLANLKAVL 148 (150)
T ss_pred HHHHHHHHh
Confidence 666665544
No 49
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=94.41 E-value=1.3 Score=41.33 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=88.5
Q ss_pred CCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCE
Q 016753 125 GPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTD 204 (383)
Q Consensus 125 gl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~ 204 (383)
+..+.....++ |.++|+|+++-.|.|.-+.|++.+...+++++.. -+|..+.|-.. ++-.--++.++-..
T Consensus 68 ~~i~v~~~V~I-~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr------SrW~~~ap~g~---~v~Wea~it~d~~~ 137 (217)
T COG5637 68 KPIEVEVQVTI-DKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR------SRWKANAPLGL---EVEWEAEITKDIPG 137 (217)
T ss_pred CceEEEEEEEe-CChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc------cceeEcCCCCc---eEEEeehhhccCCC
Confidence 44556666777 6999999999999999999999887777776422 58999998432 12211122222111
Q ss_pred EEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC-CCHHHHHHHHhhhHHHHHHHHH
Q 016753 205 YYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG-IPREIAKLGIRQGMWGAVKKIE 283 (383)
Q Consensus 205 ~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG-IP~~laN~~~~~g~p~~lkkL~ 283 (383)
-.|-=.|++-..+ ++.|.||.. +.+++. |-++|++. |.-|| .=.-++|..+.+.+-..+..=-
T Consensus 138 e~I~W~Sl~Ga~v-~NsG~VrF~---------~~pg~~-----t~V~v~ls-Y~~Pgg~~~a~va~~fgeepeqqI~~DL 201 (217)
T COG5637 138 ERIQWESLPGARV-ENSGAVRFY---------DAPGDS-----TEVKVTLS-YRPPGGLLGAVVAKLFGEEPEQQIQDDL 201 (217)
T ss_pred cEEeeecCCCCcC-CCCccEEee---------eCCCCc-----eEEEEEEE-ecCCccHHHHHHHHHhccchHHHHHHHH
Confidence 2344456654433 467888854 333222 22445544 55677 6677778888887777765544
Q ss_pred HHHHHHHhh
Q 016753 284 PGLRVYQKQ 292 (383)
Q Consensus 284 ~alrkY~~~ 292 (383)
.-++.|++.
T Consensus 202 ~RFk~~~e~ 210 (217)
T COG5637 202 ERFKEYQEN 210 (217)
T ss_pred HHHHHHHHc
Confidence 445556544
No 50
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=94.32 E-value=1.9 Score=35.91 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=72.5
Q ss_pred EEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEE--eeCCEEE
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIW--KAGTDYY 206 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~--~~~~~~~ 206 (383)
+..+.+|+ +++++|++++.|.+.-.+|...+...+ ++ ...|....+.. ..+.+ ..+-..-++- ..+..+.
T Consensus 2 i~~s~~I~-a~~~~Vw~~l~d~~~~~~w~~~~~~~~-~~--~~~Gg~~~~~~-~~~~g---~~~~~~~~i~~~~~~~~i~ 73 (139)
T cd07814 2 ITIEREFD-APPELVWRALTDPELLAQWFGPTTTAE-MD--LRVGGRWFFFM-TGPDG---EEGWVSGEVLEVEPPRRLV 73 (139)
T ss_pred eEEEEEec-CCHHHHHHHcCCHHHHHhhhCcCCceE-Ec--ccCCceEEEEE-ECCCC---CEEeccEEEEEEcCCCeEE
Confidence 34566784 999999999999999999988411111 11 12332222222 21111 1111111111 1122222
Q ss_pred EEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC-CCHHHHHHHHhhhHHHHHHHHHHH
Q 016753 207 CVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG-IPREIAKLGIRQGMWGAVKKIEPG 285 (383)
Q Consensus 207 iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG-IP~~laN~~~~~g~p~~lkkL~~a 285 (383)
.-..+- .+ |. . ......|.|.|.. +| |.|++.+..-+. .|........+++...++.+|++.
T Consensus 74 ~~~~~~-~~--~~---~---~~~~~~~~~~~~~----~~----T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07814 74 FTWAFS-DE--TP---G---PETTVTVTLEETG----GG----TRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKAL 136 (139)
T ss_pred EEeccc-CC--CC---C---CceEEEEEEEECC----CC----EEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHH
Confidence 211111 11 11 1 1356667777774 23 789888876665 555566677777888888888776
Q ss_pred HH
Q 016753 286 LR 287 (383)
Q Consensus 286 lr 287 (383)
|.
T Consensus 137 ~E 138 (139)
T cd07814 137 LE 138 (139)
T ss_pred hh
Confidence 64
No 51
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=92.67 E-value=6.1 Score=34.07 Aligned_cols=133 Identities=12% Similarity=-0.013 Sum_probs=69.8
Q ss_pred EEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe---eCCEEEEE
Q 016753 132 STVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK---AGTDYYCV 208 (383)
Q Consensus 132 ~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~---~~~~~~iv 208 (383)
+..+ +++|+.+++++.|.+....|.+-+ +.++... ++........+.. ++ ...|...-++.+ .++.+.+.
T Consensus 4 ~~~v-~a~pe~vw~~l~D~~~~~~~~pg~---~~~~~~~-~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T cd07823 4 EFTV-PAPPDRVWALLLDIERVAPCLPGA---SLTEVEG-DDEYKGTVKVKLG-PI-SASFKGTARLLEDDEAARRAVLE 76 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhcCCCc---eeccccC-CCeEEEEEEEEEc-cE-EEEEEEEEEEEeccCCCcEEEEE
Confidence 4567 599999999999999999999844 4443322 2232223333322 11 122322112221 12222222
Q ss_pred EcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC-----CCHHHHHHHHhhhHHHHHHHHH
Q 016753 209 TKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG-----IPREIAKLGIRQGMWGAVKKIE 283 (383)
Q Consensus 209 ~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG-----IP~~laN~~~~~g~p~~lkkL~ 283 (383)
..+-+ ....+.++ ..-.|.+.|. ++| |.|.|....+.+ +...+++.++++.+-.++++|+
T Consensus 77 ~~g~~----~~~~g~~~---~~~~~~l~~~----~~g----T~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~ 141 (146)
T cd07823 77 ATGKD----ARGQGTAE---ATVTLRLSPA----GGG----TRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLE 141 (146)
T ss_pred EEEec----CCCcceEE---EEEEEEEEec----CCc----EEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHH
Confidence 22210 00112222 2234555552 123 799999988877 4445577777777777777776
Q ss_pred HHH
Q 016753 284 PGL 286 (383)
Q Consensus 284 ~al 286 (383)
+.+
T Consensus 142 ~~~ 144 (146)
T cd07823 142 ARL 144 (146)
T ss_pred HHh
Confidence 554
No 52
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.38 E-value=5.3 Score=33.79 Aligned_cols=29 Identities=21% Similarity=0.113 Sum_probs=25.6
Q ss_pred EEEEEEEecCCHHHHHHHhcCccchhhHhh
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDVFRSKWDD 158 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e~R~~WD~ 158 (383)
+..+.+| ++||+.|++++.|.+...+|+.
T Consensus 2 i~~~~~i-~ap~e~Vw~~l~d~~~~~~W~~ 30 (144)
T cd07825 2 VSVSRTV-DAPAEAVFAVLADPRRHPEIDG 30 (144)
T ss_pred eEEEEEE-eCCHHHHHHHHhCccccceeCC
Confidence 4556778 5999999999999999999986
No 53
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=90.00 E-value=4.6 Score=36.34 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=75.1
Q ss_pred CeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEEE
Q 016753 127 PQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDYY 206 (383)
Q Consensus 127 ~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~~ 206 (383)
..|.....++ .+|++++++..|.+-+++.-+-+...++++..+.+ .+--..+.+- .=|+.-..|-.. ..+.-.
T Consensus 2 ~~~~~s~lv~-y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~--l~A~l~V~~k---~i~e~F~Trv~~-~~~~~~ 74 (146)
T COG2867 2 PQIERTALVP-YSASQMFDLVNDVESYPEFLPWCSASRVLERNERE--LIAELDVGFK---GIRETFTTRVTL-KPTARS 74 (146)
T ss_pred CeeEeeeecc-CCHHHHHHHHHHHHhCchhccccccceEeccCcce--eEEEEEEEhh---heeeeeeeeeee-cCchhh
Confidence 4567778886 99999999999999999999999999999864322 1111111110 011111111111 111112
Q ss_pred EEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCCCCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 207 CVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 207 iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPGIP~~laN~~~~~g~p~~lkkL~~al 286 (383)
|-.+.++-| .| ...++|.|.|+.. + +|+|.+...=++. +-+.+.+....--..-.+|.+++
T Consensus 75 I~~~l~~GP--------Fk--~L~~~W~F~pl~~---~----~ckV~f~ldfeF~--s~ll~~~~g~~f~~~a~~mv~aF 135 (146)
T COG2867 75 IDMKLIDGP--------FK--YLKGGWQFTPLSE---D----ACKVEFFLDFEFK--SRLLGALIGPVFKRLASKMVEAF 135 (146)
T ss_pred hhhhhhcCC--------hh--hhcCceEEEECCC---C----ceEEEEEEEeeeh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333222 22 5789999999942 2 4999887766665 33334443333334444444444
No 54
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=85.13 E-value=22 Score=30.13 Aligned_cols=36 Identities=22% Similarity=-0.000 Sum_probs=32.3
Q ss_pred EEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEE
Q 016753 131 TSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLE 167 (383)
Q Consensus 131 a~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le 167 (383)
.+..+ ++++++|++++.|.++-..|.+.+...+++.
T Consensus 3 ~s~~I-~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~ 38 (137)
T cd07820 3 RSTVI-PAPIEEVFDFHSRPDNLERLTPPWLEFAVLG 38 (137)
T ss_pred EEEEc-CCCHHHHHHHHcCcchHHhcCCCCCCeEEEe
Confidence 45677 6999999999999999999999998888885
No 55
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=83.55 E-value=28 Score=29.95 Aligned_cols=140 Identities=11% Similarity=0.007 Sum_probs=68.2
Q ss_pred EEEEEEEecCCHHHHHHHhcCccchhhHhhcC-ceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe-eCCEEE
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDVFRSKWDDML-AYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK-AGTDYY 206 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l-~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~-~~~~~~ 206 (383)
+..+..| ++|++.|++++.|.+...+|-.-= -.....+.....|.... +....|- ..+|-..-++.+ .....+
T Consensus 2 l~i~r~i-~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~-~~~~~~~---g~~~~~~g~v~~i~p~~~l 76 (146)
T cd08896 2 LVLSRTI-DAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFR-TVMRGPD---GEEFPNPGCFLEVVPGERL 76 (146)
T ss_pred eEEEEEe-CCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEE-EEEECCC---CCEecceEEEEEEeCCCEE
Confidence 4566788 599999999999999999994310 01111121122344322 2222221 223321111211 222233
Q ss_pred EEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC-CCHHHHHHHHhhhHHHHHHHHHHH
Q 016753 207 CVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG-IPREIAKLGIRQGMWGAVKKIEPG 285 (383)
Q Consensus 207 iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG-IP~~laN~~~~~g~p~~lkkL~~a 285 (383)
.++.......-|...... ...|.+.+.. +| |++++.+..... .......+....|....|.+|+..
T Consensus 77 ~~t~~~~~~~~~~~~~~~-----~v~~~~~~~~----~g----T~Ltl~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~ 143 (146)
T cd08896 77 VFTDALTPGWRPAEKPFM-----TAIITFEDEG----GG----TRYTARARHWTEADRKQHEEMGFHDGWGTAADQLAAL 143 (146)
T ss_pred EEEEeecCCcCCCCCCcE-----EEEEEEEecC----Cc----EEEEEEEEeCCHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 333222111112111222 2347676652 33 788875432221 233344555678899999998775
Q ss_pred H
Q 016753 286 L 286 (383)
Q Consensus 286 l 286 (383)
+
T Consensus 144 l 144 (146)
T cd08896 144 A 144 (146)
T ss_pred H
Confidence 5
No 56
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=60.76 E-value=89 Score=25.29 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=62.1
Q ss_pred cCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe-eCCEEEEEEcccCCC
Q 016753 137 DVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK-AGTDYYCVTKGVPCN 215 (383)
Q Consensus 137 d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~-~~~~~~iv~ksv~hp 215 (383)
|+|++.|++++.|.+...+| -.....+.....|..+.+ .. | ...++...-++.+ ..+..+...-...
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W----~~~~~~~~~~~~Gg~~~~--~~-~---~g~~~~~~~~v~~~~p~~~i~~~~~~~-- 68 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW----FTTSEAEMDFRPGGSFRF--MD-P---DGGEFGFDGTVLEVEPPERIVFTWRMP-- 68 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH----SEEEEEEEECSTTEEEEE--EE-T---TSEEEEEEEEEEEEETTTEEEEEEEEE--
T ss_pred CcCHHHHHHHHCCHhHHhhc----cCCCcceeeeecCCEEEE--Ee-c---CCCCceeeEEEEEEeCCEEEEEEEEcc--
Confidence 58999999999999999999 122223322234654444 22 2 2333333222221 2222232222111
Q ss_pred CCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCCCCHHHH-HHHHhhhHHHHHHHHHHHH
Q 016753 216 SVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIA-KLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 216 ~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPGIP~~la-N~~~~~g~p~~lkkL~~al 286 (383)
.-+. .....-.|.+.+.+ +| |++++.+. ++|..-. ......|...+|.+|++.+
T Consensus 69 ~~~~------~~~~~v~~~~~~~~----~~----T~l~~~~~---~~~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 69 DDPD------GPESRVTFEFEEEG----GG----TRLTLTHS---GFPDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp TSSS------CEEEEEEEEEEEET----TE----EEEEEEEE---EEHSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCC------CCceEEEEEEEEcC----Cc----EEEEEEEE---cCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 22344555565631 22 78887772 2333222 2227778888888887654
No 57
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=56.32 E-value=1.1e+02 Score=25.06 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=67.0
Q ss_pred EEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe-eCCEEEE
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK-AGTDYYC 207 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~-~~~~~~i 207 (383)
+....+| +++|+.|++++.|.+...+|..-.. .+.....|..+.+ ....+ +++...-++.+ ..+..++
T Consensus 2 ~~~~~~i-~ap~e~Vw~~~td~~~~~~W~~~~~----~~~~~~~G~~~~~-~~~~~-----~~~~~~~~v~~~~~~~~l~ 70 (136)
T cd08893 2 FVYVTYI-RATPEKVWQALTDPEFTRQYWGGTT----VESDWKVGSAFEY-RRGDD-----GTVDVEGEVLESDPPRRLV 70 (136)
T ss_pred eEEEEEe-cCCHHHHHHHHcCchhhhheecccc----cccCCcCCCeEEE-EeCCC-----cccccceEEEEecCCCeEE
Confidence 4456778 5999999999999999999976411 1211223554433 33321 11111111211 1222222
Q ss_pred EEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCCCCHHHHHHHHhhhHHHHHHHHHHHH
Q 016753 208 VTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIPREIAKLGIRQGMWGAVKKIEPGL 286 (383)
Q Consensus 208 v~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPGIP~~laN~~~~~g~p~~lkkL~~al 286 (383)
+.-.. +..+. ........-.|.|.+.+ +| |.+++.+..-+. ..........+...+|.+|+..+
T Consensus 71 ~~~~~--~~~~~---~~~~~~~~v~~~l~~~~----~~----t~l~~~~~~~~~--~~~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 71 HTWRA--VWDPE---MAAEPPSRVTFEIEPVG----DV----VKLTVTHDGFPP--GSPTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEEec--CCCcc---cCCCCCEEEEEEEEecC----Cc----EEEEEEecCCCC--chhHHHhhhcCHHHHHHHHHHHh
Confidence 22111 11110 01111234445566653 23 677777765432 22355566778888888887655
No 58
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=54.63 E-value=1.5e+02 Score=25.92 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhh
Q 016753 124 TGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDD 158 (383)
Q Consensus 124 sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~ 158 (383)
+|...+....+| ++|++.|++++.|.+...+|..
T Consensus 8 ~~~~~i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~ 41 (157)
T cd08899 8 DGGATLRFERLL-PAPIEDVWAALTDPERLARWFA 41 (157)
T ss_pred CCCeEEEEEEec-CCCHHHHHHHHcCHHHHHhhcC
Confidence 466789999999 4999999999999999999998
No 59
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=48.40 E-value=17 Score=25.72 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHhhhhc
Q 016753 3 MILYLGAVWVAFLLGLFIG 21 (383)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (383)
.++++||.-.|+++|++-|
T Consensus 7 fa~iMVPVvma~ilglIyG 25 (41)
T PF10766_consen 7 FAVIMVPVVMALILGLIYG 25 (41)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999866
No 60
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=47.08 E-value=2.2e+02 Score=25.71 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=75.9
Q ss_pred eEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecc-cccccceEEEEEEEe---eCC
Q 016753 128 QYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPF-FCSDREYIIGRRIWK---AGT 203 (383)
Q Consensus 128 eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~Pw-PvSdRDyV~~Rri~~---~~~ 203 (383)
.|..+-.+ ++|||++.+++.|+|....=-+ -++.++. +|+ -+-+..+.+. |++ ++|--.-+.-+ .++
T Consensus 2 ~~~G~f~V-~~p~e~Vw~~L~dpe~~a~ciP---G~qs~e~---~g~-e~~~~v~l~ig~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 2 DYEGTFRV-AAPPEAVWEFLNDPEQVAACIP---GVQSVET---NGD-EYTAKVKLKIGPLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred cccceEEe-cCCHHHHHHHhcCHHHHHhhcC---Ccceeee---cCC-eEEEEEEEeeccee-EEEEEEEEEccccCCCc
Confidence 35566778 5999999999999998887666 5555654 223 3444455555 444 33332222211 123
Q ss_pred EEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC-----CCHHHHHHHHhhhHHHH
Q 016753 204 DYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG-----IPREIAKLGIRQGMWGA 278 (383)
Q Consensus 204 ~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG-----IP~~laN~~~~~g~p~~ 278 (383)
.+.+-.++ --..- ...+.--+.-+++.. | +.+.|....|.| +=+.++.-++.+.+-.+
T Consensus 73 ~~~i~g~G--~~~~g---------~~~~~~~v~l~~~g~--g----t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~ 135 (146)
T COG3427 73 SITINGSG--GGAAG---------FADGTVDVQLEPSGE--G----TRVNWFADANVGGKLAQLGSRLIDSVARKLINRF 135 (146)
T ss_pred EEEEEeec--ccccc---------eeeeeeEEEEEEcCC--C----cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333332 00000 122222233333322 3 699999999999 55667777777777777
Q ss_pred HHHHHHHH
Q 016753 279 VKKIEPGL 286 (383)
Q Consensus 279 lkkL~~al 286 (383)
++.|...+
T Consensus 136 ~~~l~~~l 143 (146)
T COG3427 136 FDCLSSEL 143 (146)
T ss_pred HHHHHHHH
Confidence 77776654
No 61
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=46.44 E-value=14 Score=25.20 Aligned_cols=18 Identities=22% Similarity=0.693 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhhhccc
Q 016753 6 YLGAVWVAFLLGLFIGWL 23 (383)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (383)
+|.|+-++.+.++++||.
T Consensus 14 LAAP~iagIi~s~iv~w~ 31 (35)
T PF13940_consen 14 LAAPIIAGIIASLIVGWL 31 (35)
T ss_pred hHhHHHHHHHHHHHHHHH
Confidence 478999999999999994
No 62
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=42.23 E-value=11 Score=36.64 Aligned_cols=133 Identities=11% Similarity=-0.034 Sum_probs=79.2
Q ss_pred cEEEEcccCCCccEEEEeeC-CCCCCCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEE
Q 016753 102 WIKMMDRSTETMSYQAWGRD-PKTGPPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWI 180 (383)
Q Consensus 102 Wel~~dk~~~~~~~kVwrR~-~~sgl~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~ 180 (383)
|...+. ...+.+|++. +..+.+.+++...+. ........++.-+--+.-|+.-..-...++.... + ...|.
T Consensus 27 ~s~~k~----~~~v~~~~~a~~~~~~~i~~v~~~~~-lf~~~~~~~i~~~~~i~~~~~g~~v~~~~~~~~~--~-~~~~~ 98 (241)
T KOG3845|consen 27 WSVAKT----LKLVTVESLAGEKPKGNISRVRRFFC-LFVTEDLVFISLLWLIELLQNGPEVYNMLEKIQK--N-TDIWT 98 (241)
T ss_pred HHHHhh----cceeEEeccCCcCcCCcccccceeec-cccccchheeecchhhHHHhccchHHHHHHHHHh--h-eeeee
Confidence 555544 5568888884 445667788877774 4444444444434444445543222223332221 1 22333
Q ss_pred Eeecc----cccccceEEEEEEEe-eCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCC
Q 016753 181 RKFPF----FCSDREYIIGRRIWK-AGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRR 242 (383)
Q Consensus 181 ~K~Pw----PvSdRDyV~~Rri~~-~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~ 242 (383)
.-+|- .++.|+++-...+.. .........+.+.++.++++..++|..+|.+++...+++...
T Consensus 99 s~~~~~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~ 165 (241)
T KOG3845|consen 99 SEFDSFNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEP 165 (241)
T ss_pred EecHhhhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcc
Confidence 33332 567888885544332 222234566778899999999999999999999999997543
No 63
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=40.85 E-value=2.2e+02 Score=24.01 Aligned_cols=132 Identities=15% Similarity=0.069 Sum_probs=66.5
Q ss_pred EEEEEEEecCCHHHHHHHhcCccchhhHhhc-CceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe-eCCEEE
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDVFRSKWDDM-LAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK-AGTDYY 206 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e~R~~WD~~-l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~-~~~~~~ 206 (383)
+...-.| +++++.|++++.|++...+|-.- -......+.....|... ++....| ...+|-..-++.+ ..+..+
T Consensus 2 l~~~r~i-~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~-~~~~~~~---~g~~~~~~g~v~e~~p~~~l 76 (139)
T cd08894 2 IVTTRVI-DAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRW-RFVMHGP---DGTDYPNRIVFLEIEPPERI 76 (139)
T ss_pred EEEEEEe-CCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEE-EEEEECC---CCCEecceEEEEEEcCCCEE
Confidence 4567788 59999999999999999999531 00111222222234432 2222222 1233322112211 223333
Q ss_pred EEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCCCC--HHHHHHHHhhhHHHHHHHHHH
Q 016753 207 CVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMGIP--REIAKLGIRQGMWGAVKKIEP 284 (383)
Q Consensus 207 iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPGIP--~~laN~~~~~g~p~~lkkL~~ 284 (383)
+++-..+ + ....-.|.|+|.. .| |++++.+. .+... ...+......|.-..|.+|++
T Consensus 77 ~~t~~~~----~--------~~~~v~~~~~~~~----~g----T~ltl~~~-~~~~~~~~~~~~~~~~~Gw~~~l~~L~~ 135 (139)
T cd08894 77 VYDHGSG----P--------PRFRLTVTFEEQG----GK----TRLTWRQV-FPTAAERCEKIKFGAVEGNEQTLDRLAA 135 (139)
T ss_pred EEEeccC----C--------CcEEEEEEEEECC----CC----EEEEEEEE-cCCHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3332211 0 1123446666652 23 78887763 33211 122345667778888888876
Q ss_pred HH
Q 016753 285 GL 286 (383)
Q Consensus 285 al 286 (383)
.+
T Consensus 136 ~l 137 (139)
T cd08894 136 YL 137 (139)
T ss_pred HH
Confidence 54
No 64
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=40.57 E-value=3.1e+02 Score=26.40 Aligned_cols=136 Identities=11% Similarity=0.120 Sum_probs=84.8
Q ss_pred CCeEEEEEEEecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEeeCCEE
Q 016753 126 PPQYRTSTVYEDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWKAGTDY 205 (383)
Q Consensus 126 l~eyKa~~v~~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~~~~~~ 205 (383)
...|...-.+ +.+|++++++..|.+.+.+..+-+...++.+..+ ++..+---.+-||.. +=.|+-.-.. ....
T Consensus 67 ~k~Y~errli-gysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P-~~~~kA~LeVGFk~l--~E~y~S~Vt~-~~p~-- 139 (227)
T KOG3177|consen 67 EKAYSERRLI-GYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRP-SGPLKADLEVGFKPL--DERYTSNVTC-VKPH-- 139 (227)
T ss_pred HHHHHHHhhh-CCCHHHHHHHHHhHHHhhccccceeccceeecCC-CCCceeeEEecCccc--chhheeeeEE-eccc--
Confidence 3457777788 6999999999999999999999999999998765 455566666667643 2334433111 1111
Q ss_pred EEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecCC--CCHHHHHHHHhhhHHHHHHHHH
Q 016753 206 YCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDMG--IPREIAKLGIRQGMWGAVKKIE 283 (383)
Q Consensus 206 ~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DPG--IP~~laN~~~~~g~p~~lkkL~ 283 (383)
.+.+...++. =-...++.|.|.|-++.+ | +|.+-+-.--.-. |=..+++++.. ...+.|.
T Consensus 140 l~kt~~~d~r---------LF~~L~t~Wsf~pg~~~p--~---tc~ldf~v~FeF~S~lhs~va~~Ffd----~V~~~~v 201 (227)
T KOG3177|consen 140 LTKTVCADGR---------LFNHLITIWSFKPGPNIP--R---TCTLDFSVSFEFKSLLHSQVATIFFD----EVVKQMV 201 (227)
T ss_pred ceEEeecccc---------HHHhhhheeeeccCCCCC--C---eEEEEEEEEEEehhHHHHHHHHHHHH----HHHHHHH
Confidence 1111111111 112467899999987433 3 3777655444444 77777777776 4445555
Q ss_pred HHH
Q 016753 284 PGL 286 (383)
Q Consensus 284 ~al 286 (383)
+|+
T Consensus 202 ~AF 204 (227)
T KOG3177|consen 202 NAF 204 (227)
T ss_pred HHH
Confidence 555
No 65
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=37.00 E-value=24 Score=25.75 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhhhccc
Q 016753 7 LGAVWVAFLLGLFIGWL 23 (383)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (383)
.+=+-+++++||+||++
T Consensus 5 ~lL~~~~l~iGlmIGY~ 21 (47)
T PF11772_consen 5 LLLAILALAIGLMIGYG 21 (47)
T ss_pred HHHHHHHHHHHHHeeee
Confidence 34456789999999986
No 66
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=36.92 E-value=9.9 Score=41.25 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=58.9
Q ss_pred EeecccccccceEEEEEEEeeCCEEEEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEeccCCCCCccceEEEEEEEEecC
Q 016753 181 RKFPFFCSDREYIIGRRIWKAGTDYYCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPVESRRGNGQLTACEVILFHHEDM 260 (383)
Q Consensus 181 ~K~PwPvSdRDyV~~Rri~~~~~~~~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv~~~~~~G~~tac~V~~~~~~DP 260 (383)
...|+ ..|||+..| +..+.+..+++|...+.-.+ ||+....+.+.|.|.. .|+ ++++|+.-.|.
T Consensus 572 s~~ph--~~~~~~ViR------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g----~g~---sr~~~i~r~dl 635 (674)
T KOG2200|consen 572 SMRPH--PSRDFGVIR------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCG----GGQ---SRVTHICRVDL 635 (674)
T ss_pred ccCCC--CCCCceeee------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccC----Ccc---hhhhhhhhhhc
Confidence 44455 589999988 44677788999877777777 9999999999999885 344 68999999998
Q ss_pred C--CCHHHHHHH
Q 016753 261 G--IPREIAKLG 270 (383)
Q Consensus 261 G--IP~~laN~~ 270 (383)
+ .|.|+-+-+
T Consensus 636 kg~~~~wy~k~f 647 (674)
T KOG2200|consen 636 KGRSPEWYNKSF 647 (674)
T ss_pred ccCCchhhhccc
Confidence 8 999986644
No 67
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=36.83 E-value=33 Score=28.99 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred EEEEEEEecCCHHHHHHHhcCccchhhHh
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDVFRSKWD 157 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e~R~~WD 157 (383)
+..+..| ++|++.|++++.|.+...+|-
T Consensus 2 ~~~~~~~-~ap~e~Vw~a~td~e~~~~W~ 29 (133)
T cd08897 2 ITVETTV-DAPIEKVWEAWTTPEHITKWN 29 (133)
T ss_pred EEEEEEe-CCCHHHHHHHhCCHHHHhhCC
Confidence 3456788 599999999999999999994
No 68
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.48 E-value=17 Score=31.73 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhccc
Q 016753 10 VWVAFLLGLFIGWL 23 (383)
Q Consensus 10 ~~~~~~~~~~~~~~ 23 (383)
++++++||++|||.
T Consensus 2 ~~i~lvvG~iiG~~ 15 (128)
T PF06295_consen 2 AIIGLVVGLIIGFL 15 (128)
T ss_pred hHHHHHHHHHHHHH
Confidence 46778888888875
No 69
>COG3330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.84 E-value=51 Score=31.41 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=46.8
Q ss_pred EEEEEEEecCCHHHHHHHhcCccchh-hHhhcCceeeEEEeecCCCcEE-EEEE------EeecccccccceEEEEEEEe
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDVFRS-KWDDMLAYSTTLEECPTTGTMV-IQWI------RKFPFFCSDREYIIGRRIWK 200 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e~R~-~WD~~l~~~~~Le~~~~~g~~I-vy~~------~K~PwPvSdRDyV~~Rri~~ 200 (383)
|=+.+.+ |++++.--.|-.. ++. +|--.+-..+.++....+-..+ -|.. .-+|.|++||||++-.....
T Consensus 58 ~~~yayW-dis~~t~~~~~~q--~~ed~~~lRlYDvT~~~~~~~nah~~~e~~~delt~nwYi~ip~~d~DY~idiGyl~ 134 (215)
T COG3330 58 YWAYAYW-DISPITRELFRYQ--GGEDELALRLYDVTDVDFLGQNAHRIQEYYLDELTRNWYIPIPVSDRDYLIDIGYLT 134 (215)
T ss_pred cEEEEEE-cCCHHHHHHHHhh--cccchhheecceeeEEEecCCCccceeEEecCchhhcceeccCCCccceEEEeeeEc
Confidence 5566777 5777665444321 122 5555444555444322221111 1111 23578899999998665555
Q ss_pred eCCEEEEEEcc--cCCCCCCC
Q 016753 201 AGTDYYCVTKG--VPCNSVPR 219 (383)
Q Consensus 201 ~~~~~~iv~ks--v~hp~~P~ 219 (383)
.++.++.+.+| |.-|..++
T Consensus 135 ~dG~fl~laRS~~vrtP~~~~ 155 (215)
T COG3330 135 PDGRFLTLARSNPVRTPRAYP 155 (215)
T ss_pred CCCcEEEEEecccccCCCCCc
Confidence 67788866554 33444433
No 70
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=27.80 E-value=3.7e+02 Score=22.63 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=24.0
Q ss_pred EEEEEEecCCHHHHHHHhcCccchhhHhh
Q 016753 130 RTSTVYEDVTPELVRDFFWDDVFRSKWDD 158 (383)
Q Consensus 130 Ka~~v~~d~spe~v~d~l~D~e~R~~WD~ 158 (383)
+....| ++|++.|++++.|.+.-.+|-.
T Consensus 3 ~~~~~i-~ap~e~Vw~a~t~p~~l~~W~~ 30 (136)
T cd08901 3 KTAMLI-RRPVAEVFEAFVDPEITTKFWF 30 (136)
T ss_pred eEEEEe-cCCHHHHHHHhcCHHHhccccc
Confidence 456778 5999999999999999999843
No 71
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=27.39 E-value=4.1e+02 Score=23.03 Aligned_cols=99 Identities=12% Similarity=-0.024 Sum_probs=55.4
Q ss_pred EEEEEEEecCCHHHHHHHhcCcc--chhhHhhcCceeeEEEeecCCCcEEEEEEEeecccccccceEEEEEEEe-eCCEE
Q 016753 129 YRTSTVYEDVTPELVRDFFWDDV--FRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPFFCSDREYIIGRRIWK-AGTDY 205 (383)
Q Consensus 129 yKa~~v~~d~spe~v~d~l~D~e--~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~PwPvSdRDyV~~Rri~~-~~~~~ 205 (383)
+..+.++ +++++.|.+++.|.+ ....|-+.+..++.++-....| .|-.+.. +-.. +-..+.- |+.. ++...
T Consensus 3 ~~~e~~i-~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~G-svR~~~~--~~~~-~~~~~kE-~l~~~D~~~~ 76 (148)
T cd07816 3 LEHEVEL-KVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPG-SIKLITF--GPGG-KVKYVKE-RIDAVDEENK 76 (148)
T ss_pred EEEEEEe-cCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCc-eEEEEEE--cCCC-cceEEEE-EEEEEccccc
Confidence 5667888 599999999999988 3578999888888876421122 2433332 2111 1112222 3332 22222
Q ss_pred EEEEcccCCCCCCCCCCcEEeeeeeeeEEEEEe
Q 016753 206 YCVTKGVPCNSVPRRDKPRRVDLCYSSWCIRPV 238 (383)
Q Consensus 206 ~iv~ksv~hp~~P~~~g~VRV~~~~Sgw~Irpv 238 (383)
.+-.+-++-+. +. -.+..|.+.+.+.|.
T Consensus 77 ~~~y~vveg~~-~~----~~~~~y~~t~~v~~~ 104 (148)
T cd07816 77 TYKYTVIEGDV-LK----DGYKSYKVEIKFVPK 104 (148)
T ss_pred EEEEEEEeccc-cc----CceEEEEEEEEEEEC
Confidence 22222222111 00 146789999999887
No 72
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=25.48 E-value=1.4e+02 Score=30.50 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=70.9
Q ss_pred cccCCCCCCCHHHHHHHHHHHhcCCCCCCcEEEEc-ccC---C--C-------------ccEEEEeeCCCCCCCeEEEEE
Q 016753 73 LNHGQSNVVTEEDLEHLWRLAEMKDGGPTWIKMMD-RST---E--T-------------MSYQAWGRDPKTGPPQYRTST 133 (383)
Q Consensus 73 ~~~~~~~~vt~~Df~~~~~~~e~~~~~~~Wel~~d-k~~---~--~-------------~~~kVwrR~~~sgl~eyKa~~ 133 (383)
+|.++...||.+||+.+....+. .++|.= -++ + + .+=..||++.--|++.|=-.-
T Consensus 233 ~e~~~~~~ft~ee~~~L~~~~d~------fsLmTYd~s~~~~pg~nap~~wi~~~l~~l~~~s~~r~KiLlGlNFYG~d~ 306 (392)
T KOG2091|consen 233 EENGQLKFFTPEEFSKLVAVYDG------FSLMTYDYSLVQGPGPNAPLEWIRHCLHHLGGSSAKRPKILLGLNFYGNDF 306 (392)
T ss_pred CCCCCcCcCCHHHHHHHHHhhhh------eeEEEeecccccCCCCCCCHHHHHHHHHHhCCccccccceeEeeecccccc
Confidence 35566667999999999877642 333321 000 0 0 001233343333444433222
Q ss_pred EE----ecCCHHHHHHHhcCccchhhHhhcCceeeEEEeecCCCcEEEEEEEeecc---cccccceEEEEEEEeeC
Q 016753 134 VY----EDVTPELVRDFFWDDVFRSKWDDMLAYSTTLEECPTTGTMVIQWIRKFPF---FCSDREYIIGRRIWKAG 202 (383)
Q Consensus 134 v~----~d~spe~v~d~l~D~e~R~~WD~~l~~~~~Le~~~~~g~~Ivy~~~K~Pw---PvSdRDyV~~Rri~~~~ 202 (383)
.. +-+|....++++.+..-+-+||+.-.++....+.+.+|.-++|+=.=... .---|+|=....+|+-|
T Consensus 307 ~~gdg~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~~Ri~lA~~~gvgISIWe~G 382 (392)
T KOG2091|consen 307 NLGDGGEAITAKRYLQLLKGEKSVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLELRIELARELGVGISIWEYG 382 (392)
T ss_pred ccCCCCCceeHHHHHHHHhccCcceeeccccchhheeeeccCCCceEEEecchHhHHHHHHHHHHhCCceEeeecc
Confidence 22 23899999999999999999999777776666656677777765332221 00234554555566543
No 73
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=25.39 E-value=57 Score=21.92 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=17.5
Q ss_pred chhhhHHHHHHHHHHhhhhccc
Q 016753 2 EMILYLGAVWVAFLLGLFIGWL 23 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (383)
||+-.|+-+|.-+++||.+|..
T Consensus 2 EIf~~a~i~~~lvlvGla~Gf~ 23 (31)
T PF08041_consen 2 EIFNIAVICFGLVLVGLALGFV 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4666788889999999988853
No 74
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=22.76 E-value=53 Score=28.16 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.6
Q ss_pred cCCHHHHHHHhcCccchhhHh
Q 016753 137 DVTPELVRDFFWDDVFRSKWD 157 (383)
Q Consensus 137 d~spe~v~d~l~D~e~R~~WD 157 (383)
++||+.|++++.|.+...+|-
T Consensus 2 ~ap~e~Vw~A~Tdp~~l~~w~ 22 (132)
T PTZ00220 2 YVPPEVLYNAFLDAYTLTRLS 22 (132)
T ss_pred CCCHHHHHHHHcCHHHHHHHh
Confidence 599999999999999999994
No 75
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=22.00 E-value=1e+02 Score=25.90 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=24.0
Q ss_pred EEEEEEecCCHHHHHHHhcCccchhhHhh
Q 016753 130 RTSTVYEDVTPELVRDFFWDDVFRSKWDD 158 (383)
Q Consensus 130 Ka~~v~~d~spe~v~d~l~D~e~R~~WD~ 158 (383)
..+-.| ++|++.|++++.|.+...+|-.
T Consensus 3 ~~~r~i-~ap~e~Vw~A~T~~e~l~~W~~ 30 (126)
T cd08892 3 SLTETF-QVPAEELYEALTDEERVQAFTR 30 (126)
T ss_pred EEEEEE-CCCHHHHHHHHCCHHHHHhhcC
Confidence 345678 5999999999999999999954
No 76
>PF04823 Herpes_UL49_2: Herpesvirus UL49 tegument protein; InterPro: IPR006908 This is a family of herpesvirus UL49 tegument proteins. It was shown that interactions between herpesvirus envelope and tegument proteins may play a role in secondary envelopment during herpesvirus virion maturation.
Probab=20.24 E-value=1.2e+02 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHHh
Q 016753 76 GQSNVVTEEDLEHLWRLAE 94 (383)
Q Consensus 76 ~~~~~vt~~Df~~~~~~~e 94 (383)
+...+=|+|||+.|++...
T Consensus 62 d~~pPrtneeLd~lL~~a~ 80 (96)
T PF04823_consen 62 DMNPPRTNEELDRLLEAAV 80 (96)
T ss_pred cCCCCCChHHHHHHHHhce
Confidence 4456789999999998653
Done!