BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016755
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q9S|A Chain A, Crystal Structure Of Riboflavin Kinase With Ternary
Product Complex
Length = 149
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 103/143 (72%)
Query: 236 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMS 295
P++ G VV+G GRGSK LGIPTAN + ++ ++ +G+Y+GWA + + V+KMV+S
Sbjct: 6 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVS 65
Query: 296 IGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRK 355
IGWNPY+ N +K++E ++H F EDFY E L++ IVGY+RPE NF SLE+LI+ I D +
Sbjct: 66 IGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIE 125
Query: 356 VAERALDLPLYSKYRDDPYLKIT 378
A++ L+LP Y K ++D + +++
Sbjct: 126 EAKKRLELPEYLKIKEDNFFQVS 148
>pdb|1NB0|A Chain A, Crystal Structure Of Human Riboflavin Kinase
pdb|1NB9|A Chain A, Crystal Structure Of Riboflavin Kinase
pdb|1P4M|A Chain A, Crystal Structure Of Riboflavin Kinase
Length = 147
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 103/143 (72%)
Query: 236 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMS 295
P++ G VV+G GRGSK LGIPTAN + ++ ++ +G+Y+GWA + + V+KMV+S
Sbjct: 4 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVS 63
Query: 296 IGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRK 355
IGWNPY+ N +K++E ++H F EDFY E L++ IVGY+RPE NF SLE+LI+ I D +
Sbjct: 64 IGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIE 123
Query: 356 VAERALDLPLYSKYRDDPYLKIT 378
A++ L+LP Y K ++D + +++
Sbjct: 124 EAKKRLELPEYLKIKEDNFFQVS 146
>pdb|1N05|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N06|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N06|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N07|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N07|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N08|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N08|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
Length = 163
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 236 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMS 295
P G VV G GRGSK LGIPTAN+S + ++L SGVYFG+A + R V+ MVMS
Sbjct: 23 PIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR-VFPMVMS 81
Query: 296 IGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRK 355
+GWNPY+ N ++ E L+ EDFY+E + ++++GYIRPE N+ L+ LI IH D +
Sbjct: 82 VGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIEDIHTDIR 141
Query: 356 VAERALDLPLYSKYRDDPYLKI 377
VA ++D P YS Y+ DP+ K+
Sbjct: 142 VALNSMDRPSYSSYKKDPFFKV 163
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 114/204 (55%), Gaps = 4/204 (1%)
Query: 26 MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85
++S V + +Y K++ K ++GK LE A II++ LP +K E V E + +
Sbjct: 47 LYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKE 106
Query: 86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSD-E 143
+PGA +LI HL HG+P ALA++S A+ + K S + FS +++G D E
Sbjct: 107 VFPTAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPE 166
Query: 144 VRTGKPSPDIFLEAAKRLNMEPS--SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201
V+ GKP PDIFL AKR + P+ LV ED+ GV A AAGM+VV VP
Sbjct: 167 VQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLT 226
Query: 202 TAADEVINSLLDLRPEKWGLPPFQ 225
T A V+NSL D +PE +GLP ++
Sbjct: 227 TKATLVLNSLQDFQPELFGLPSYE 250
>pdb|3BNW|A Chain A, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
pdb|3BNW|B Chain B, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
Length = 181
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 235 EPWYIGGPVVKGLGRGSKVLGIPTANLSTE-GYSDVLSEHPSGVYFGWAGLS-------- 285
+P+++ G VV G GRG LG PTAN+ + + L + + V +GW +S
Sbjct: 16 QPFFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVPGKERE 75
Query: 286 TRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLET 345
+ G Y SIG+N FD T+EP+ LHEF DFY + ++++G IR +F SL+
Sbjct: 76 SFGPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEIRSMGSFHSLQA 135
Query: 346 LIAKIHEDRKVAERALDLPLYSKY 369
L+ I D + L P ++
Sbjct: 136 LVDTIKSDVQFTRDMLQKPQLQEF 159
>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
pdb|2X0K|B Chain B, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
Length = 338
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 237 WYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGW-----------AGLS 285
+Y+ GPVV+G GRG K LG PTAN + + D ++ GVY GW +
Sbjct: 187 FYVTGPVVRGAGRGGKELGFPTAN---QYFHDTVALPADGVYAGWLTILPTEAPVSGNME 243
Query: 286 TRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLET 345
Y +S+G NP F + ++++E ++L D D Y ++ + V ++R F S+E
Sbjct: 244 PEVAYAAAISVGTNPTFGDEQRSVESFVLDR-DADLYGHDVKVEFVDHVRAMEKFDSVEQ 302
Query: 346 LIAKIHED 353
L+ + +D
Sbjct: 303 LLEVMAKD 310
>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
pdb|3ZUG|B Chain B, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
Length = 338
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 237 WYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGW-----------AGLS 285
+Y+ GPVV+G GRG K LG PTAN + + D ++ GVY GW +
Sbjct: 187 FYVTGPVVRGAGRGGKELGFPTAN---QYFHDTVALPADGVYAGWLTILPTEAPVSGNME 243
Query: 286 TRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLET 345
Y +S+G NP F + +++++ ++L D D Y ++ + V ++R F S+E
Sbjct: 244 PEVAYAAAISVGTNPTFGDEQRSVDSFVLDR-DADLYGHDVKVEFVDHVRAMEKFDSVEQ 302
Query: 346 LIAKIHED 353
L+ + +D
Sbjct: 303 LLEVMAKD 310
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPD 152
P +++ + G+ + LAS+S +A I + ++ F +++ +E + KP+P+
Sbjct: 91 FPDVLKVLNEVKSQGLEIGLASSSVKADIFRALE-ENRLQGFFDIVLSGEEFKESKPNPE 149
Query: 153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL 212
I+L A K+LN++ S +L+IEDS G+ AG AA +EV A+ + +AA +++SL
Sbjct: 150 IYLTALKQLNVQASRALIIEDSEKGIAAGVAADVEVWAIRDNEFGXDQ-SAAKGLLDSLT 208
Query: 213 DL 214
D+
Sbjct: 209 DV 210
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
N Y L LPG RL+ L + + LAS+S A KI + + F
Sbjct: 78 NRDYQXLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRNA---PKILRRLAIIDDFH 134
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196
IV + GKP PDIFL AA L++ P+ IED+ G+ A K+AG V V
Sbjct: 135 AIVDPTTLAKGKPDPDIFLTAAAXLDVSPADCAAIEDAEAGISAIKSAGXFAVGV----G 190
Query: 197 QTHRYTAADEVINSLLDLRPE 217
Q AD V+ DL E
Sbjct: 191 QGQPXLGADLVVRQTSDLTLE 211
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 26 MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS---- 81
++ E + YGK + +I G E I+ E + + F V+
Sbjct: 18 LYFEAYRRVAESYGKPYTEDLHRRIXGVPEREGLPILXEALEIKDSLENFKKRVHEEKKR 77
Query: 82 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWNESFSVIVG 140
+FS+ L K PG ++ + + +ALA+++ R +E + + F V V
Sbjct: 78 VFSELL---KENPGVREALEFVKSKRIKLALATSTPQREALER--LRRLDLEKYFDVXVF 132
Query: 141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189
D+V+ GKP P+I+L +RLN+ P +V EDS GV A K+AG+E +
Sbjct: 133 GDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERI 181
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153
PG + LS G +A+A++ + I+ G + +VI G D V GKP PD+
Sbjct: 107 PGVLEGLDRLSAAGFRLAMATSKVEKAARA-IAELTGLDTRLTVIAGDDSVERGKPHPDM 165
Query: 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP---SLPKQTHRYTAADEVINS 210
L A+ L + P +VI D V G+AAGM V+ V S P + R AD V++S
Sbjct: 166 ALHVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDELMR-AGADTVVDS 224
Query: 211 L 211
Sbjct: 225 F 225
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPD 152
LPG + G+ + LAS S +E K+ +SF + ++++ KP P
Sbjct: 96 LPGVREAVALCKEQGLLVGLASASPLHXLE-KVLTXFDLRDSFDALASAEKLPYSKPHPQ 154
Query: 153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSL 211
++L+ A +L ++P + + +EDSV G +A KAA + VP+ Q R+ A+ ++SL
Sbjct: 155 VYLDCAAKLGVDPLTCVALEDSVNGXIASKAARXRSIVVPAPEAQNDPRFVLANVKLSSL 214
Query: 212 LDL 214
+L
Sbjct: 215 TEL 217
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
Length = 293
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 229 EGTLPSEPWYIG------GPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWA 282
EG + P Y+G G V K G K LG PTAN+ ++ L + GVY
Sbjct: 146 EGRVEEIPAYLGRYFEIEGIVHKDREFGRK-LGFPTANIDRG--NEKLVDLKRGVYLVRV 202
Query: 283 GLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPS 342
L VM++G+ P +A + +F+ D Y + L L ++ ++R E F S
Sbjct: 203 HLPDGKKKFGVMNVGFRPTVGDARNVKYEVYILDFEGDLYGQRLKLEVLKFMRDEKKFDS 262
Query: 343 LETLIAKIHEDRKVAERALDLPLYSKY 369
+E L A I +D K A +D + SK+
Sbjct: 263 IEELKAAIDQDVKSARNMIDDIINSKF 289
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
N Y D + LPG L+ + + + + L+S S A + G ++ F
Sbjct: 102 NNYYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSSASKNAI---NVLNHLGISDKFD 158
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
I + + + KP P+IFL +AK LN+ P + + IED+ G+ A +A M V V
Sbjct: 159 FIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANMFSVGV 213
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 71 AKHEFVNEVYSMFSDHL--C-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISY 127
A E + +Y ++ C K + PGA ++ + G+ + + S + ++ ++++
Sbjct: 85 ATEEEIKAIYQAKTEEFNKCPKAERXPGALEVLTKIKSEGLTPXVVTGSGQTSLLDRLNH 144
Query: 128 QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187
++ V + +V+ GKP+P+ +L A K+ +P+ +LVIE++ +GV AG AAG+
Sbjct: 145 NFPGIFQANLXVTAFDVKYGKPNPEPYLXALKKGGFKPNEALVIENAPLGVQAGVAAGIF 204
Query: 188 VVAVPSLPKQTHRYTAADEVINSLLDLRPE 217
+AV + P H +E N L P+
Sbjct: 205 TIAVNTGP--LHDNVLLNEGANLLFHSXPD 232
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 74 EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI-------- 125
+F++ + + F+ + V A+ GA ++ L GVP A+ SNS R + K+
Sbjct: 93 DFLDVLETRFNAAMTGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLTEL 152
Query: 126 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV 175
+ +H ++ S+ VG GKP PD++ AA++L + P +VIEDSV
Sbjct: 153 AGEHIYDPSW---VGG----RGKPHPDLYTFAAQQLGILPERCVVIEDSV 195
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
N+ Y + PG +L+K L + + +ALAS S + G+ F
Sbjct: 77 NDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY---FD 133
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
I EV KP+PDIF+ AA + + PS S+ +EDS G+ A K +G
Sbjct: 134 AIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
N+ Y + PG +L+K L + + +ALAS S + G+ F
Sbjct: 77 NDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY---FD 133
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
I EV KP+PDIF+ AA + + PS S+ +EDS G+ A K +G
Sbjct: 134 AIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
N+ Y + PG +L+K L + + +ALAS S + G+ F
Sbjct: 77 NDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY---FD 133
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
I EV KP+PDIF+ AA + + PS S+ +EDS G+ A K +G
Sbjct: 134 AIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28 SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
SE + +G + E + G+T I+ + A E + +Y S+
Sbjct: 43 SEAWHQVMKTHGLDLSREEAYMHAGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85 DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
+ + + +PGA L++ + G+ PM + + + +E +H + F ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
+V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
Length = 293
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 229 EGTLPSEPWYIG------GPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWA 282
EG + P Y+G G V K G K LG PTAN+ ++ L + GVY
Sbjct: 146 EGRVEEIPAYLGRYFEIEGIVHKDREFGRK-LGFPTANIDRG--NEKLVDLKRGVYLVRV 202
Query: 283 GLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPS 342
L V ++G+ P +A + +F+ D Y + L L ++ + R E F S
Sbjct: 203 HLPDGKKKFGVXNVGFRPTVGDARNVKYEVYILDFEGDLYGQRLKLEVLKFXRDEKKFDS 262
Query: 343 LETLIAKIHEDRKVAERALDLPLYSKY 369
+E L A I +D K A +D + SK+
Sbjct: 263 IEELKAAIDQDVKSARNXIDDIINSKF 289
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28 SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
SE + +G + E + G+T I+ + A E + +Y S+
Sbjct: 43 SEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85 DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
+ + + +PGA L++ + G+ PM + + + +E +H + F ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
+V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28 SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
SE + +G + E + G+T I+ + A E + +Y S+
Sbjct: 43 SEAWHQVMKTHGLDLSREEAYMHNGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85 DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
+ + + +PGA L++ + G+ PM + + + +E +H + F ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
+V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28 SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
SE + +G + E + G+T I+ + A E + +Y S+
Sbjct: 43 SEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85 DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
+ + + +PGA L++ + G+ PM + + + +E +H + F ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
+V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28 SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
SE + +G + E + G+T I+ + A E + +Y S+
Sbjct: 43 SEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85 DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
+ + + +PGA L++ + G+ PM + + + +E +H + F ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
+V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28 SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
SE + +G + E + G+T I+ + A E + +Y S+
Sbjct: 43 SEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85 DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
+ + + +PGA L++ + G+ PM + + + +E +H + F ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
+V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28 SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
SE + +G + E + G+T I+ + A E + +Y S+
Sbjct: 43 SEAWHQVMKTHGLDLSREEAYMHDGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85 DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
+ + + +PGA L++ + G+ PM + + + +E +H + F ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
+V+ GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 12/182 (6%)
Query: 49 KIVGKTPLEEAAIIVEDYGLPCAKH-EFVNEVYSMFSDHLCKVKAL--PGANRLIKHLSC 105
+ +GKT LEE+ I+ G+ A E + YS +D + P + HL
Sbjct: 47 RTIGKT-LEESFSILT--GITDADQLESFRQEYSKEADIYXNANTILFPDTLPTLTHLKK 103
Query: 106 HGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165
G+ + + S +R I S + H ++ F +I+G ++V KP P+ L A RL P
Sbjct: 104 QGIRIGIISTKYRFRILSFLR-NHXPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACP 162
Query: 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA--ADEVINS---LLDLRPEKWG 220
L I DS + AAG+ V S + A D +I++ L+ + +K G
Sbjct: 163 EEVLYIGDSTVDAGTAAAAGVSFTGVTSGXTTAQEFQAYPYDRIISTLGQLISVPEDKSG 222
Query: 221 LP 222
P
Sbjct: 223 CP 224
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 93 LPGANRLIKHLSCHGVPMALASNSHRA-TIESKISYQHGWNESFSVIVGSDEVRTGKPSP 151
LPG L+ L + + LAS S A TI + + + E F+ + +++ KP P
Sbjct: 97 LPGIRSLLADLRAQQISVGLASVSLNAPTILAALELR----EFFTFCADASQLKNSKPDP 152
Query: 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
+IFL A L + P + + IED+ G+ A A+GM V +
Sbjct: 153 EIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGI 192
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 139 VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV----AVPSL 194
+G+D V KP PDIFL A + + P +V+EDSV G+ +AAG V+ A +
Sbjct: 137 LGADRV---KPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGXRVIGFTGASHTY 193
Query: 195 PKQTHRYT--AADEVINSLLDL 214
P R T A+ VI+ DL
Sbjct: 194 PSHADRLTDAGAETVISRXQDL 215
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF 154
GA L+ L + + MA+ SN + + S+I +++ F I+GS + T KPSP+
Sbjct: 107 GAIELLDTLKENNITMAIVSNKNGERLRSEIHHKN-LTHYFDSIIGSGDTGTIKPSPEPV 165
Query: 155 LEAAKRLNMEPSSSL-VIEDSVIGVVAGKAAG 185
L A +N+EPS + I DS+ + + AG
Sbjct: 166 LAALTNINIEPSKEVFFIGDSISDIQSAIEAG 197
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 72 KHEFVNEVYSMFSDHLCK-----VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS 126
K +F E +F H + K P ++ L G +A+ SN + KI
Sbjct: 57 KDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEE-LSKKIL 115
Query: 127 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186
+ F +IVG D KPSP L+ + L EP +L++ D+ + AGK AG
Sbjct: 116 DILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGT 175
Query: 187 E 187
+
Sbjct: 176 K 176
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 72 KHEFVNEVYSMFSDHLCK-----VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS 126
K +F E +F H + K P ++ L G +A+ SN + KI
Sbjct: 59 KDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEE-LSKKIL 117
Query: 127 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186
+ F +IVG D KPSP L+ + L EP +L++ D+ + AGK AG
Sbjct: 118 DILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGT 177
Query: 187 EV 188
+
Sbjct: 178 KT 179
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 89 KVKALPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDEVRT 146
++ ALPGA L++ L + +A++ ATI K + + N+ IV D+V
Sbjct: 89 QIIALPGAVELLETLDKENLKWCIATSGGIDTATINLK-ALKLDINKIN--IVTRDDVSY 145
Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182
GKP PD+FL AAK++ LVI D++ +A +
Sbjct: 146 GKPDPDLFLAAAKKIGAPIDECLVIGDAIWDXLAAR 181
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Query: 27 FSEVLKTFLVKYGKEWDGREKHKI---VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83
++ V + L YGK + + K + E I ++ A++E V
Sbjct: 22 YTTVXREVLATYGKPFSPAQAQKTFPXAAEQAXTELGIAASEFDHFQAQYEDVX------ 75
Query: 84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE 143
+ H +++ PG L + L + + + ++ R +ES + + +V + +D+
Sbjct: 76 ASHYDQIELYPGITSLFEQLPSE-LRLGIVTSQRRNELESGXR-SYPFXXRXAVTISADD 133
Query: 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187
KP P L A +++N+ P ++L I DSV +AA ++
Sbjct: 134 TPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANVD 177
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 76 VNEVYSMF----SDHLCKVKA--LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH 129
VN V +F +DH C++K PG L K+L GV +A+ SN ++ + +
Sbjct: 90 VNRVLEVFKPYYADH-CQIKTGPFPGILDLXKNLRQKGVKLAVVSNKPNEAVQ--VLVEE 146
Query: 130 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189
+ SF +G KP+PD E K L + + I DS I + + + + +
Sbjct: 147 LFPGSFDFALGEKSGIRRKPAPDXTSECVKVLGVPRDKCVYIGDSEIDIQTARNSEXDEI 206
Query: 190 AV 191
AV
Sbjct: 207 AV 208
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 83 FSDHLCKVKAL-PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141
+ ++LC + L P ++ L G +A+ +N ++ ++ G + FS +G
Sbjct: 105 YGENLCNISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILT-AFGIDHLFSEXLGG 163
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
+ KP P F + + P L + DS + A +AG VV +
Sbjct: 164 QSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGL 213
>pdb|3K1Z|A Chain A, Crystal Structure Of Human Haloacid Dehalogenase-like
Hydrolase Domain Containing 3 (hdhd3)
Length = 263
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 78 EVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV 137
++Y FS H C + L GA ++ G+ +A+ SN R E F
Sbjct: 94 QLYKDFS-HPCTWQVLDGAEDTLRECRTRGLRLAVISNFDRRLEGILGGLGL--REHFDF 150
Query: 138 IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184
++ S+ KP P IF EA + + EP + + D+ + G A
Sbjct: 151 VLTSEAAGWPKPDPRIFQEALRLAHXEPVVAAHVGDNYLCDYQGPRA 197
>pdb|3UM9|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
pdb|3UM9|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
Length = 230
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 86 HLCK--VKALPGAN--RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 141
HLC + P A+ + ++ L G+ A+ SN R +I + G SF ++
Sbjct: 87 HLCSEYLSLTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVG-NSGLTNSFDHLISV 145
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171
DEVR KP ++ A L++ S L +
Sbjct: 146 DEVRLFKPHQKVYELAMDTLHLGESEILFV 175
>pdb|2O2X|A Chain A, Crystal Structure Of A Putative Had-Like Phosphatase
(Mll2559) From Mesorhizobium Loti At 1.50 A Resolution
Length = 218
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186
KP+P +EA KRL ++ SL++ D + AGK AG+
Sbjct: 137 KPNPGXLVEAGKRLALDLQRSLIVGDKLADXQAGKRAGL 175
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG-KAAGMEVVAVPSLPKQTHRYTAA 204
GKPSP+ F A + + +E +++I D ++G V G + GM + V +T ++ +
Sbjct: 188 VGKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQV-----RTGKFRPS 242
Query: 205 DE 206
DE
Sbjct: 243 DE 244
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 108 VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167
V + L +N R T KI F +V E R KP+P IF L ++P
Sbjct: 147 VRLLLLTNGDRQTQREKIE-ACACQSYFDAVVVGGEQREEKPAPSIFYYCCNLLGVQPGD 205
Query: 168 SLVIEDSV-IGVVAGKAAGME 187
+++ D++ + G AG++
Sbjct: 206 CVMVGDTLETDIQGGLNAGLK 226
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 130 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG-KAAGMEV 188
G + F+ + ++++ GKP P FLEA +R ++ S+++ + D +AG + AGM
Sbjct: 137 GLADYFAFALCAEDLGIGKPDPAPFLEALRRAKVDASAAVHVGDHPSDDIAGAQQAGMRA 196
Query: 189 V 189
+
Sbjct: 197 I 197
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 108 VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167
V + L +N R T KI F IV E + KP+P IF L ++P
Sbjct: 137 VRLLLLTNGDRQTQREKIE-ACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGD 195
Query: 168 SLVIEDSV-IGVVAGKAAGME 187
+++ D++ + G AG++
Sbjct: 196 CVMVGDTLETDIQGGLNAGLK 216
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--IVGSDEVRTGKPSP 151
PGA L++ L+ G + + + + R + G + F+ ++G DE KP P
Sbjct: 73 PGAVELVRELAGRGYRLGILTRNARELAHVTLEAI-GLADCFAEADVLGRDEA-PPKPHP 130
Query: 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ 197
L+ A+ ++ PS + + D + G+AAG V V +LP
Sbjct: 131 GGLLKLAEAWDVSPSRXVXVGDYRFDLDCGRAAGTRTVLV-NLPDN 175
>pdb|2GMW|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|2GMW|B Chain B, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|3ESQ|A Chain A, Crystal Structure Of Calcium-Bound D,D-Heptose
1.7-Bisphosphate Phosphatase From E. Coli
pdb|3ESR|A Chain A, Crystal Structure Of D,D-Heptose1.7-Bisphosphate
Phosphatase From E. Coli In Complex With Calcium And
Phosphate
pdb|3L1U|A Chain A, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1U|B Chain B, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1V|A Chain A, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate.
pdb|3L1V|B Chain B, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate
Length = 211
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAAD 205
KP P + L A L+++ ++S ++ D + + A AA G +V+ P AAD
Sbjct: 131 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 190
Query: 206 EVINSLLDL 214
V+NSL DL
Sbjct: 191 WVLNSLADL 199
>pdb|1AQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1AQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 111 ALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170
A+ SN +++ ++ G +SF ++ D R KP PD + + L + P+ L
Sbjct: 111 AILSNGAPDMLQALVA-NAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLF 169
Query: 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQT 198
+ + V K G V V L ++
Sbjct: 170 VSSNGFDVGGAKNFGFSVARVARLSQEA 197
>pdb|3L8E|A Chain A, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
pdb|3L8E|B Chain B, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
Length = 187
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAAD 205
KP P + L A L+++ ++S ++ D + + A AA G +V+ P AAD
Sbjct: 111 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 170
Query: 206 EVINSLLDL 214
V+NSL DL
Sbjct: 171 WVLNSLADL 179
>pdb|1QQ7|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ7|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloropropionic Acid Covalently Bound
pdb|1QQ6|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
pdb|1QQ6|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus With Chloroacetic Acid Covalently Bound
Length = 253
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 111 ALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170
A+ SN +++ ++ G +SF ++ D R KP PD + + L + P+ L
Sbjct: 111 AILSNGAPDMLQALVA-NAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLF 169
Query: 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQT 198
+ + V K G V V L ++
Sbjct: 170 VSSNGFDVGGAKNFGFSVARVARLSQEA 197
>pdb|1QQ5|A Chain A, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
pdb|1QQ5|B Chain B, Structure Of L-2-Haloacid Dehalogenase From Xanthobacter
Autotrophicus
Length = 253
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 111 ALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170
A+ SN +++ ++ G +SF ++ D R KP PD + + L + P+ L
Sbjct: 111 AILSNGAPDMLQALVA-NAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLF 169
Query: 171 IEDSVIGVVAGKAAGMEVVAVPSLPKQT 198
+ + V K G V V L ++
Sbjct: 170 VSSNGFDVGGAKNFGFSVARVARLSQEA 197
>pdb|2IOF|K Chain K, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
Sodium Borohydride-Reduced Substrate Intermediate
Length = 267
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 76 VNEVYSMFSDHLCKV-----KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQ 128
+ E+Y F + L + + G +I L G+ + + R ++ +K +
Sbjct: 83 IQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAAL 142
Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGME 187
G+ F +V D+V G+P P + + A L + P + ++ + D+V + G+ AGM
Sbjct: 143 QGYKPDF--LVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMW 200
Query: 188 VVAV 191
V V
Sbjct: 201 TVGV 204
>pdb|2IOF|A Chain A, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
Sodium Borohydride-Reduced Substrate Intermediate
Length = 267
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 76 VNEVYSMFSDHLCKV-----KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQ 128
+ E+Y F + L + + G +I L G+ + + R ++ +K +
Sbjct: 83 IQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAAL 142
Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGME 187
G+ F +V D+V G+P P + + A L + P + ++ + D+V + G+ AGM
Sbjct: 143 QGYKPDF--LVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMW 200
Query: 188 VVAV 191
V V
Sbjct: 201 TVGV 204
>pdb|2IOH|A Chain A, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
pdb|2IOH|B Chain B, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
pdb|2IOH|C Chain C, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
pdb|2IOH|D Chain D, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
Length = 267
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 76 VNEVYSMFSDHLCKV-----KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQ 128
+ E+Y F + L + + G +I L G+ + + R ++ +K +
Sbjct: 83 IQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAAL 142
Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGME 187
G+ F +V D+V G+P P + + A L + P + ++ + D+V + G+ AGM
Sbjct: 143 QGYKPDF--LVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMW 200
Query: 188 VVAV 191
V V
Sbjct: 201 TVGV 204
>pdb|1SWV|A Chain A, Crystal Structure Of The D12a Mutant Of
Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
pdb|1SWV|B Chain B, Crystal Structure Of The D12a Mutant Of
Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
pdb|1SWW|A Chain A, Crystal Structure Of The Phosphonoacetaldehyde Hydrolase
D12a Mutant Complexed With Magnesium And Substrate
Phosphonoacetaldehyde
pdb|1SWW|B Chain B, Crystal Structure Of The Phosphonoacetaldehyde Hydrolase
D12a Mutant Complexed With Magnesium And Substrate
Phosphonoacetaldehyde
Length = 267
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 76 VNEVYSMFSDHLCKV-----KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQ 128
+ E+Y F + L + + G +I L G+ + + R ++ +K +
Sbjct: 83 IQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAAL 142
Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGME 187
G+ F +V D+V G+P P + + A L + P + ++ + D+V + G+ AGM
Sbjct: 143 QGYKPDF--LVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMW 200
Query: 188 VVAV 191
V V
Sbjct: 201 TVGV 204
>pdb|2FI1|A Chain A, The Crystal Structure Of A Hydrolase From Streptococcus
Pneumoniae Tigr4
Length = 190
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF 154
G + L++ +S G L S+ + +E I + F+ +V S KP+P+
Sbjct: 86 GVSDLLEDISNQGGRHFLVSHRNDQVLE--ILEKTSIAAYFTEVVTSSSGFKRKPNPESM 143
Query: 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 194
L ++ + SS LVI D I + AG+AAG++ S+
Sbjct: 144 LYLREKYQI--SSGLVIGDRPIDIEAGQAAGLDTHLFTSI 181
>pdb|3L8F|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With Magnesium And
Phosphate
pdb|3L8G|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With
D-Glycero-D-Manno- Heptose 1 ,7-Bisphosphate
Length = 187
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAAD 205
KP P L A L+++ ++S + D + A AA G +V+ P AAD
Sbjct: 111 KPHPGXLLSARDYLHIDXAASYXVGDKLEDXQAAVAANVGTKVLVRTGKPITPEAENAAD 170
Query: 206 EVINSLLDL 214
V+NSL DL
Sbjct: 171 WVLNSLADL 179
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186
S E++ KP P+IF + ++P + I+DS I + G+
Sbjct: 166 SYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGI 211
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186
S E++ KP P+IF + ++P + I+DS I + G+
Sbjct: 166 SYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGI 211
>pdb|1FEZ|A Chain A, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
pdb|1FEZ|B Chain B, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
pdb|1FEZ|C Chain C, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
pdb|1FEZ|D Chain D, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
Length = 256
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 76 VNEVYSMFSDHLCKV-----KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQ 128
+ E+Y F + L + + +I L G+ + + R ++ +K +
Sbjct: 79 IQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAAL 138
Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGME 187
G+ F +V D+V G+P P + + A L + P + ++ + D+V + G+ AGM
Sbjct: 139 QGYKPDF--LVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMW 196
Query: 188 VVAV 191
V V
Sbjct: 197 TVGV 200
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG-KAAGMEVVAVPSLPKQTHRYTAAD 205
GKP FLEA + EP +++I D V G + GM + V +T +Y A+D
Sbjct: 178 GKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILV-----KTGKYRASD 232
Query: 206 EVINSLLDLRPEKWGLPPF 224
E EK PP+
Sbjct: 233 E----------EKINPPPY 241
>pdb|1RDF|A Chain A, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|B Chain B, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|C Chain C, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|D Chain D, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|E Chain E, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|F Chain F, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
Length = 267
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 76 VNEVYSMFSDHLCKV-----KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQ 128
+ E+Y F + L + + +I L G+ + + R ++ +K +
Sbjct: 83 IQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAAL 142
Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGME 187
G+ F +V D+V G+P P + + A L + P + ++ + D+V + G+ AGM
Sbjct: 143 QGYKPDF--LVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMW 200
Query: 188 VVAV 191
V V
Sbjct: 201 TVGV 204
>pdb|1RQL|A Chain A, Crystal Structure Of Phosponoacetaldehyde Hydrolase
Complexed With Magnesium And The Inhibitor Vinyl
Sulfonate
pdb|1RQL|B Chain B, Crystal Structure Of Phosponoacetaldehyde Hydrolase
Complexed With Magnesium And The Inhibitor Vinyl
Sulfonate
pdb|1RQN|A Chain A, Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
pdb|1RQN|B Chain B, Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
Length = 267
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 76 VNEVYSMFSDHLCKV-----KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQ 128
+ E+Y F + L + + +I L G+ + + R ++ +K +
Sbjct: 83 IQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAAL 142
Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGME 187
G+ F +V D+V G+P P + + A L + P + ++ + D+V + G+ AGM
Sbjct: 143 QGYKPDF--LVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMW 200
Query: 188 VVAV 191
V V
Sbjct: 201 TVGV 204
>pdb|3QNM|A Chain A, Haloalkane Dehalogenase Family Member From Bacteroides
Thetaiotaomicron Of Unknown Function
Length = 240
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153
P A ++++L+ + + SN R ++S+ G + F I+ S+++ KP P+I
Sbjct: 110 PHAKEVLEYLAPQ-YNLYILSNGFRE-LQSRKXRSAGVDRYFKKIILSEDLGVLKPRPEI 167
Query: 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAG 181
F A E SL I DS + G
Sbjct: 168 FHFALSATQSELRESLXIGDSWEADITG 195
>pdb|3UMG|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|C Chain C, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|D Chain D, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|E Chain E, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|F Chain F, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|G Chain G, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|H Chain H, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
Length = 254
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 135 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186
+ VI+GSD R KP P +L A+ L + P ++ + A A G+
Sbjct: 156 WDVIIGSDINRKYKPDPQAYLRTAQVLGLHPGEVMLAAAHNGDLEAAHATGL 207
>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga
Maritima At 1.60 A Resolution
Length = 234
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 307 KTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDR 354
K + + FD D DE+ GY+ E N+ S+E + ++ ++R
Sbjct: 124 KKRKNLIFSSFDLDLLDEKFKGTKYGYLIDEENYGSIENFVERVEKER 171
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 138 IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 193
I G GKPSP I A ++ ++++ D++ ++AG AG+E + V S
Sbjct: 166 ISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLS 222
>pdb|2PR1|A Chain A, Crystal Structure Of The Bacillus Subtilis
N-Acetyltransferase Ylbp Protein In Complex With
Coenzyme-A
pdb|2PR1|B Chain B, Crystal Structure Of The Bacillus Subtilis
N-Acetyltransferase Ylbp Protein In Complex With
Coenzyme-A
Length = 163
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 276 GVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLH 315
G+YFG ++ +Y++ + NPYFDN + +E W L
Sbjct: 52 GIYFGDKLVARMSLYQV--NGKSNPYFDNRQDYLELWKLE 89
>pdb|3B8X|A Chain A, Crystal Structure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase (Cold) H188n
Mutant With Bound Gdp-Perosamine
pdb|3B8X|B Chain B, Crystal Structure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase (Cold) H188n
Mutant With Bound Gdp-Perosamine
Length = 390
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 319 EDFYDEELHLVIVGY-IRP-----EANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDD 372
+D ++E V+ GY +RP L+ L I RK AE LD K++D
Sbjct: 235 DDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLD-----KFKDH 289
Query: 373 PYLKITSSKGQ 383
PYL + G+
Sbjct: 290 PYLDVQQETGE 300
>pdb|2R0T|A Chain A, Crystal Sructure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase With A Trapped
Plp-Glutamate Geminal Diamine
pdb|2R0T|B Chain B, Crystal Sructure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase With A Trapped
Plp-Glutamate Geminal Diamine
Length = 390
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 319 EDFYDEELHLVIVGY-IRP-----EANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDD 372
+D ++E V+ GY +RP L+ L I RK AE LD K++D
Sbjct: 235 DDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLD-----KFKDH 289
Query: 373 PYLKITSSKGQ 383
PYL + G+
Sbjct: 290 PYLDVQQETGE 300
>pdb|2GMS|A Chain A, E Coli Gdp-4-Keto-6-Deoxy-D-Mannose-3-Dehydratase With
Bound Hydrated Plp
pdb|2GMS|B Chain B, E Coli Gdp-4-Keto-6-Deoxy-D-Mannose-3-Dehydratase With
Bound Hydrated Plp
pdb|2GMU|A Chain A, Crystal Structure Of E Coli
Gdp-4-Keto-6-Deoxy-D-Mannose-3- Dehydratase Complexed
With Plp-Glutamate Ketimine Intermediate
pdb|2GMU|B Chain B, Crystal Structure Of E Coli
Gdp-4-Keto-6-Deoxy-D-Mannose-3- Dehydratase Complexed
With Plp-Glutamate Ketimine Intermediate
Length = 390
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 319 EDFYDEELHLVIVGY-IRP-----EANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDD 372
+D ++E V+ GY +RP L+ L I RK AE LD K++D
Sbjct: 235 DDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLD-----KFKDH 289
Query: 373 PYLKITSSKGQ 383
PYL + G+
Sbjct: 290 PYLDVQQETGE 300
>pdb|3GR9|A Chain A, Crystal Structure Of Cold H188k S187n
pdb|3GR9|B Chain B, Crystal Structure Of Cold H188k S187n
pdb|3GR9|C Chain C, Crystal Structure Of Cold H188k S187n
pdb|3GR9|D Chain D, Crystal Structure Of Cold H188k S187n
pdb|3GR9|E Chain E, Crystal Structure Of Cold H188k S187n
pdb|3GR9|F Chain F, Crystal Structure Of Cold H188k S187n
pdb|3GR9|G Chain G, Crystal Structure Of Cold H188k S187n
pdb|3GR9|H Chain H, Crystal Structure Of Cold H188k S187n
Length = 390
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 319 EDFYDEELHLVIVGY-IRP-----EANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDD 372
+D ++E V+ GY +RP L+ L I RK AE LD K++D
Sbjct: 235 DDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLD-----KFKDH 289
Query: 373 PYLKITSSKGQ 383
PYL + G+
Sbjct: 290 PYLDVQQETGE 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,879,652
Number of Sequences: 62578
Number of extensions: 527227
Number of successful extensions: 1618
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1555
Number of HSP's gapped (non-prelim): 85
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)