Query 016756
Match_columns 383
No_of_seqs 255 out of 1263
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 2.5E-82 5.3E-87 633.0 29.8 350 20-377 14-403 (408)
2 KOG2288 Galactosyltransferases 100.0 2.4E-66 5.2E-71 485.8 16.2 244 116-362 8-259 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 4.4E-49 9.5E-54 413.8 22.4 237 116-362 382-626 (636)
4 KOG2287 Galactosyltransferases 100.0 6.8E-46 1.5E-50 370.4 21.2 206 118-331 94-303 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 4.2E-46 9.1E-51 342.2 16.0 191 133-330 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 1.3E-32 2.8E-37 272.4 17.0 189 116-323 77-307 (382)
7 PF02434 Fringe: Fringe-like; 99.8 3.3E-19 7.1E-24 171.1 13.1 192 119-336 6-209 (252)
8 PF13334 DUF4094: Domain of un 99.8 4E-20 8.6E-25 152.4 3.2 77 23-101 1-95 (95)
9 KOG2246 Galactosyltransferases 99.6 4.9E-15 1.1E-19 149.1 11.9 175 114-331 86-270 (364)
10 PLN03153 hypothetical protein; 99.3 1.3E-10 2.8E-15 120.3 19.6 180 118-333 121-316 (537)
11 KOG3708 Uncharacterized conser 96.9 0.0056 1.2E-07 63.9 9.5 93 205-320 84-182 (681)
12 PF01755 Glyco_transf_25: Glyc 94.9 0.47 1E-05 43.2 12.0 94 123-232 4-101 (200)
13 PF13641 Glyco_tranf_2_3: Glyc 94.5 1.1 2.5E-05 40.7 13.6 116 207-325 77-198 (228)
14 TIGR03472 HpnI hopanoid biosyn 94.1 1.2 2.6E-05 45.0 13.9 161 156-325 70-241 (373)
15 PF13506 Glyco_transf_21: Glyc 93.9 0.08 1.7E-06 48.1 4.5 130 199-330 14-147 (175)
16 TIGR03469 HonB hopene-associat 93.6 3.2 6.8E-05 42.1 16.0 157 156-323 70-248 (384)
17 cd02520 Glucosylceramide_synth 90.5 13 0.00027 33.4 16.0 135 156-326 30-166 (196)
18 cd06532 Glyco_transf_25 Glycos 89.1 4.6 0.0001 34.5 10.0 116 124-303 3-118 (128)
19 cd04192 GT_2_like_e Subfamily 89.0 9.3 0.0002 34.3 12.4 108 208-317 74-188 (229)
20 cd02525 Succinoglycan_BP_ExoA 87.9 21 0.00045 32.4 15.8 116 207-326 72-197 (249)
21 PF00535 Glycos_transf_2: Glyc 86.4 8.6 0.00019 32.0 10.0 91 208-298 70-168 (169)
22 PF13632 Glyco_trans_2_3: Glyc 85.6 2.5 5.4E-05 37.7 6.5 112 219-334 1-123 (193)
23 cd02510 pp-GalNAc-T pp-GalNAc- 85.5 36 0.00077 32.8 15.9 121 208-328 75-218 (299)
24 cd02526 GT2_RfbF_like RfbF is 84.9 24 0.00052 32.0 12.9 122 200-323 60-190 (237)
25 cd04185 GT_2_like_b Subfamily 83.9 30 0.00065 30.6 14.4 95 201-323 65-160 (202)
26 cd06439 CESA_like_1 CESA_like_ 83.9 21 0.00045 32.9 12.2 112 208-325 101-217 (251)
27 cd04186 GT_2_like_c Subfamily 83.4 25 0.00055 29.4 14.2 78 215-323 73-151 (166)
28 cd06421 CESA_CelA_like CESA_Ce 82.4 9.3 0.0002 34.6 9.0 119 208-330 76-206 (234)
29 PRK11204 N-glycosyltransferase 82.0 62 0.0013 32.8 16.8 146 173-329 97-254 (420)
30 cd06420 GT2_Chondriotin_Pol_N 81.9 11 0.00024 32.7 9.0 96 208-323 71-166 (182)
31 cd06423 CESA_like CESA_like is 80.6 22 0.00047 29.4 10.1 93 207-299 69-170 (180)
32 cd04187 DPM1_like_bac Bacteria 79.4 15 0.00033 32.0 9.1 134 156-300 29-164 (181)
33 cd06433 GT_2_WfgS_like WfgS an 77.0 20 0.00044 31.0 9.1 113 207-324 66-181 (202)
34 cd04196 GT_2_like_d Subfamily 74.2 61 0.0013 28.5 14.2 114 212-330 75-198 (214)
35 COG1216 Predicted glycosyltran 73.1 20 0.00043 35.0 8.8 136 184-323 55-206 (305)
36 cd06442 DPM1_like DPM1_like re 72.2 40 0.00087 30.2 10.0 84 214-299 76-167 (224)
37 COG1215 Glycosyltransferases, 70.3 1.1E+02 0.0025 30.6 13.9 165 156-330 84-260 (439)
38 TIGR03111 glyc2_xrt_Gpos1 puta 70.3 84 0.0018 32.5 13.1 40 207-246 122-161 (439)
39 PF04646 DUF604: Protein of un 67.5 9.6 0.00021 37.1 5.0 49 284-332 12-64 (255)
40 TIGR01556 rhamnosyltran L-rham 63.6 1.4E+02 0.0029 28.3 13.2 36 205-241 63-98 (281)
41 cd04179 DPM_DPG-synthase_like 61.2 56 0.0012 28.2 8.4 116 174-299 43-167 (185)
42 cd06437 CESA_CaSu_A2 Cellulose 59.2 47 0.001 30.3 7.9 110 208-323 79-199 (232)
43 PRK14583 hmsR N-glycosyltransf 58.9 2.2E+02 0.0049 29.3 17.1 155 156-324 104-268 (444)
44 cd04195 GT2_AmsE_like GT2_AmsE 57.1 1.3E+02 0.0029 26.2 12.7 113 208-328 72-194 (201)
45 cd06435 CESA_NdvC_like NdvC_li 57.0 1.5E+02 0.0033 26.8 15.2 112 207-324 73-196 (236)
46 cd02522 GT_2_like_a GT_2_like_ 56.9 1E+02 0.0022 27.4 9.7 109 209-323 65-173 (221)
47 cd02514 GT13_GLCNAC-TI GT13_GL 52.8 37 0.0008 34.4 6.5 84 206-298 87-174 (334)
48 PRK10714 undecaprenyl phosphat 51.6 81 0.0018 31.3 8.7 134 156-300 38-174 (325)
49 cd04184 GT2_RfbC_Mx_like Myxoc 51.4 1.7E+02 0.0036 25.6 16.8 109 208-325 75-189 (202)
50 cd06434 GT2_HAS Hyaluronan syn 47.3 1.2E+02 0.0026 27.3 8.6 75 157-242 29-103 (235)
51 PF10111 Glyco_tranf_2_2: Glyc 46.7 2.7E+02 0.0059 26.7 14.2 164 155-325 33-210 (281)
52 cd04191 Glucan_BSP_ModH Glucan 45.1 2.8E+02 0.0062 26.5 14.1 119 199-324 77-218 (254)
53 TIGR03030 CelA cellulose synth 39.1 4.4E+02 0.0095 29.3 12.7 124 199-330 212-353 (713)
54 PRK05454 glucosyltransferase M 37.0 3.6E+02 0.0079 30.1 11.6 196 118-329 123-350 (691)
55 cd04188 DPG_synthase DPG_synth 32.7 3.6E+02 0.0077 24.0 9.5 89 156-252 30-119 (211)
56 PF04666 Glyco_transf_54: N-Ac 27.0 2E+02 0.0043 28.7 6.8 51 114-166 47-97 (297)
57 PLN03181 glycosyltransferase; 26.8 3.3E+02 0.0071 28.8 8.5 34 196-229 178-211 (453)
58 cd00761 Glyco_tranf_GTA_type G 26.8 3.2E+02 0.0069 21.5 13.7 32 209-240 70-101 (156)
59 cd06438 EpsO_like EpsO protein 25.7 4.4E+02 0.0096 22.8 12.5 93 201-297 65-169 (183)
60 PLN02726 dolichyl-phosphate be 25.7 5.3E+02 0.011 23.7 15.0 92 207-300 84-183 (243)
61 PLN03182 xyloglucan 6-xylosylt 24.4 3.6E+02 0.0078 28.4 8.2 94 136-229 106-210 (429)
62 PF03452 Anp1: Anp1; InterPro 23.5 4.6E+02 0.01 25.8 8.5 87 155-242 55-168 (269)
63 PF06306 CgtA: Beta-1,4-N-acet 23.2 2.2E+02 0.0047 29.0 6.2 130 95-240 65-199 (347)
64 PF09258 Glyco_transf_64: Glyc 22.7 1E+02 0.0022 29.6 3.9 38 216-253 75-112 (247)
65 cd06913 beta3GnTL1_like Beta 1 22.4 5.6E+02 0.012 22.8 11.3 44 209-252 77-120 (219)
66 PF03742 PetN: PetN ; InterPr 22.4 1.2E+02 0.0025 19.9 2.7 22 23-44 5-26 (29)
67 cd04190 Chitin_synth_C C-termi 22.2 2.1E+02 0.0046 26.6 5.9 109 215-323 72-206 (244)
68 PF06072 Herpes_US9: Alphaherp 20.9 99 0.0021 23.6 2.6 16 27-42 42-57 (60)
69 cd06427 CESA_like_2 CESA_like_ 20.3 6.6E+02 0.014 22.9 12.9 114 207-323 75-198 (241)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.5e-82 Score=632.97 Aligned_cols=350 Identities=38% Similarity=0.676 Sum_probs=295.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccccCcccchHHHH------Hhhhhc-ccCCCcc----cc---ccccc-ccc----c
Q 016756 20 QIHTSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLS------NFLKKS-MEQRPKV----LT---VEDKL-MLL----G 80 (383)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~----~~---~~~~~-~~~----~ 80 (383)
+.+|++|+++||++|||+|++||+|||..||+.+..+ ++++.. ++|+.+. .. ..|.+ +|. +
T Consensus 14 ~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~t~~~ 93 (408)
T PLN03193 14 SVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSKTHNA 93 (408)
T ss_pred ccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccchhHHHHHHhhHHHH
Confidence 5689999999999999999999999999998777643 223222 3554432 11 12222 333 8
Q ss_pred hhhhhhhHHHhhhchhhhhhcCc--ccccccc-----CCCCCCCceEEEEEEEcCCCCHHHHHHHHHHhccCCccchhhc
Q 016756 81 CKDLERRIVEAEMDLTLAKSQGY--LKNQLLQ-----SGSSSGKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLE 153 (383)
Q Consensus 81 ~~~~~~~~~~le~~l~~~~~~~~--~~~~~~~-----~~~~~~~k~~llI~V~Sa~~~~~RR~aIR~TW~~~~~~l~~l~ 153 (383)
||+|||+|++||||||+|++.++ .++.... .....+++++++|+|+|+|++++||++||+|||+++..+++++
T Consensus 94 ~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle 173 (408)
T PLN03193 94 IQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLE 173 (408)
T ss_pred HHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccc
Confidence 89999999999999999999765 3332211 1234566799999999999999999999999999887666776
Q ss_pred -cCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHH
Q 016756 154 -ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLE 232 (383)
Q Consensus 154 -~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~ 232 (383)
+.|+.+|||||+++++++.++++|++|+++|||||++ ||+|+|.|||.||+++|+|+.++++++||+|+|||+|||++
T Consensus 174 ~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-DfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~ 252 (408)
T PLN03193 174 EEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-DHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIA 252 (408)
T ss_pred cCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-ecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHH
Confidence 6889999999999877778999999999999999998 69999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCceEEEEeecCCccccCCCcccccCccccC-CCCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCc
Q 016756 233 GLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFG-DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHD 311 (383)
Q Consensus 233 ~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~-~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~E 311 (383)
+|+.+|+.++.++++|+||++.+|+..+++.|||+|+||+|+ +++.|||||+|+||+||+|+|++|+.+++.++.|++|
T Consensus 253 ~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~E 332 (408)
T PLN03193 253 TLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANE 332 (408)
T ss_pred HHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcc
Confidence 999999988778899999999886655678899999999987 5899999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCeEeeCCCcccCCCC-------CCCCcccccCCCCCc-----hhhhhhhhhhhhhhccccchhccc
Q 016756 312 DTSVGSWMMGVRATYKDDNRFCCSSIN-------RGCRPLSRLLMPLNN-----NIIFAASHALIYCILWCGFCEVAL 377 (383)
Q Consensus 312 DV~vG~wl~~l~v~~id~~~f~~~~~~-------~g~~C~~sf~~p~~~-----~~~F~~~h~~~~~~~~c~~~~~~~ 377 (383)
||++|+|+.+|+|+|+|+++|||++++ +|++|+++|++ +++ ..+..++|. . ||+=+.|+
T Consensus 333 DV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~-~csg~c~~~~~~~~~h~--~----c~~~~~~~ 403 (408)
T PLN03193 333 DVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDW-SCSGICRSADRIKEVHR--R----CGEGENAL 403 (408)
T ss_pred hhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecc-cCcccCCHHHHHHHHHH--h----cCCCcccc
Confidence 999999999999999999999998865 38999999888 554 345555554 3 66544444
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-66 Score=485.81 Aligned_cols=244 Identities=50% Similarity=0.872 Sum_probs=229.0
Q ss_pred CCceEEEEEEEcCCCCHHHHHHHHHHhccCCccchhhc-cCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCc
Q 016756 116 GKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLE-ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHE 194 (383)
Q Consensus 116 ~~k~~llI~V~Sa~~~~~RR~aIR~TW~~~~~~l~~l~-~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~ 194 (383)
+++++++|+|.|+|++.+||+++|+|||++++.|++++ ++||.+|||||+ ++.+++++++|++|.++|+|+++|++++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 67899999999999999999999999999999999999 899999999999 5678899999999999999999997799
Q ss_pred ccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccccCccccC
Q 016756 195 EAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFG 274 (383)
Q Consensus 195 DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~ 274 (383)
|+|++|+.||+.+|.+|.++|+++||+|||||+|||++.|...|.+++.++++|||||++|+++.+|++|||||+ |+|+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred CCCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCCeEeeCCCcccCCC--CCCCCcccccCCCCC
Q 016756 275 DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDNRFCCSSI--NRGCRPLSRLLMPLN 352 (383)
Q Consensus 275 ~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v~~id~~~f~~~~~--~~g~~C~~sf~~p~~ 352 (383)
+..+||||+.|++|+||+|||++|+.|+..++.|.+|||++|.||+||+|+|+||+++||+++ ..+++|+++|++ ++
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~~~~~~-kc 244 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCAASFDW-KC 244 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccchhhhccceeeeeecc-cc
Confidence 833399999999999999999999999999999999999999999999999999999999998 688999999876 44
Q ss_pred ch-----hhhhhhhh
Q 016756 353 NN-----IIFAASHA 362 (383)
Q Consensus 353 ~~-----~~F~~~h~ 362 (383)
+. .+-.++|.
T Consensus 245 sglC~~~~rm~~~h~ 259 (274)
T KOG2288|consen 245 SGLCKSEDRMLEVHK 259 (274)
T ss_pred cccCchHHHHhHHHH
Confidence 33 34555555
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.4e-49 Score=413.79 Aligned_cols=237 Identities=19% Similarity=0.325 Sum_probs=203.7
Q ss_pred CCceEEEEEEEcCCCCHHHHHHHHHHhccCCccchhhccCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcc
Q 016756 116 GKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEE 195 (383)
Q Consensus 116 ~~k~~llI~V~Sa~~~~~RR~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D 195 (383)
.++++|+|+|+|+|+|++||++||+|||+... ....++.++|++|.+.+ +.+++.|++|+++|+|||++ ||+|
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~----~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~-dF~D 454 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA----VRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLM-PFVD 454 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhccccc----cCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEE-eeec
Confidence 34689999999999999999999999998642 12345889999999864 56889999999999999988 6999
Q ss_pred cCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecC-CccccCCCcccccCccccC
Q 016756 196 AQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSG-DVVTEEGRQWYEPEWWKFG 274 (383)
Q Consensus 196 sY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g-~pir~~~~K~y~p~~~~f~ 274 (383)
+|.|||+||++++.|+...++++|++|+|||+|||+++|+++|+.....+++|+|++..+ .|+|++.+|||+|.. .|
T Consensus 455 sY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~--ey 532 (636)
T PLN03133 455 YYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE--EW 532 (636)
T ss_pred hhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHH--HC
Confidence 999999999999999987799999999999999999999999988776778999999865 899999999999873 46
Q ss_pred CCCCCCccccCCeEEECHHHHHHHHHh--cccCCCCCCchHHHHHHhh-----hCCCeEeeCCCcccCCCCCCCCccccc
Q 016756 275 DGKSYFRHAAGSIFVLSRNLAQYININ--SASLKTYAHDDTSVGSWMM-----GVRATYKDDNRFCCSSINRGCRPLSRL 347 (383)
Q Consensus 275 ~~~~Yp~y~~G~gYvlS~dla~~I~~~--~~~l~~~~~EDV~vG~wl~-----~l~v~~id~~~f~~~~~~~g~~C~~sf 347 (383)
+++.|||||+|+||+||+|+|++|+.. +..++.|++|||++|+|+. ++.+++.++.+||+..+..+.+++|..
T Consensus 533 p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~H~~ 612 (636)
T PLN03133 533 PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVAHYQ 612 (636)
T ss_pred CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEEecC
Confidence 789999999999999999999999865 4578999999999999985 566788899999888777777777644
Q ss_pred CCCCCchhhhhhhhh
Q 016756 348 LMPLNNNIIFAASHA 362 (383)
Q Consensus 348 ~~p~~~~~~F~~~h~ 362 (383)
.|..--.++..++.
T Consensus 613 -sP~eM~~lW~~l~~ 626 (636)
T PLN03133 613 -SPREMLCLWQKLQE 626 (636)
T ss_pred -CHHHHHHHHHHHhc
Confidence 44555555665444
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-46 Score=370.45 Aligned_cols=206 Identities=21% Similarity=0.299 Sum_probs=190.3
Q ss_pred ceEEEEEEEcCCCCHHHHHHHHHHhccCCccchhhccCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccC
Q 016756 118 KLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQ 197 (383)
Q Consensus 118 k~~llI~V~Sa~~~~~RR~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY 197 (383)
.++++|+|.|++++++||++||+|||++.. .....++++|++|.+++.. .+++.|.+|++.|||||+. ||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~-df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQV-DFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEE-ecccch
Confidence 589999999999999999999999999874 2234588899999987654 6689999999999999988 799999
Q ss_pred CChhHHHHHHHHHHhhc-CCceEEEEEcCCceecHHHHHHHhhcc-CCCCceEEEEeecC-CccccCCCcccccCccccC
Q 016756 198 EELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRS-RGQESAYIGCMKSG-DVVTEEGRQWYEPEWWKFG 274 (383)
Q Consensus 198 ~nLt~Kt~~~f~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~-~~~~~~YiG~~~~g-~pir~~~~K~y~p~~~~f~ 274 (383)
.|||+||++++.|+.++ ++++|++|+|||+|||+++|+.+|..+ .+.++.|+|.+..+ +|+|++.+|||+|+ ..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~--~~y 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPE--SEY 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCH--HHC
Confidence 99999999999999998 899999999999999999999999998 78899999998865 99999999999998 568
Q ss_pred CCCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhC-CCeEeeCCC
Q 016756 275 DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV-RATYKDDNR 331 (383)
Q Consensus 275 ~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l-~v~~id~~~ 331 (383)
+...|||||+|+||+||+++|+.|+.++...+.++.|||++|+|+... ++++++...
T Consensus 246 ~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~ 303 (349)
T KOG2287|consen 246 PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPG 303 (349)
T ss_pred CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcc
Confidence 888999999999999999999999999999999999999999999987 999988776
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=4.2e-46 Score=342.17 Aligned_cols=191 Identities=22% Similarity=0.316 Sum_probs=171.2
Q ss_pred HHHHHHHHHhccCCccchhhccCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccCCChhHHHHHHHHHHh
Q 016756 133 LNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAV 212 (383)
Q Consensus 133 ~RR~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~ 212 (383)
+||++||+||++.... ...++.++||+|.+++.+..+++.|.+|+++|+|||++ ||.|+|.|||.||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~~----~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~-d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF----KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQG-DFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhccccc----CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEee-ecccccchhhHHHHHHHHHHH
Confidence 5999999999998741 24679999999999865667888899999999999988 799999999999999999999
Q ss_pred hc-CCceEEEEEcCCceecHHHHHHHhhcc---CCCCceEEEEeecCCccccCCCcccccCccccCCCCCCCccccCCeE
Q 016756 213 QI-WDAEFYVKVDDNIDLDLEGLIGLLDRS---RGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIF 288 (383)
Q Consensus 213 ~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~---~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~~~~~Yp~y~~G~gY 288 (383)
++ ++++|++|+|||+|||+++|.++|... .....+|.+++..++|++++.+|||+|+. .|+.+.|||||+|++|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~--~y~~~~yP~y~~G~~y 153 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE--EYPDDYYPPYCSGGGY 153 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee--ecccccCCCcCCCCeE
Confidence 99 679999999999999999999999987 33455665666677999999999999974 4677899999999999
Q ss_pred EECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCCeEeeCC
Q 016756 289 VLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDN 330 (383)
Q Consensus 289 vlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v~~id~~ 330 (383)
+||+++|+.|+.++..++.+++|||++|+|+.+++++++|++
T Consensus 154 vls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 154 VLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 999999999999998899999999999999999999999864
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=272.38 Aligned_cols=189 Identities=20% Similarity=0.247 Sum_probs=157.3
Q ss_pred CCceEEEEEEEcCCCC--HHHHHHHHHHhccCCc-cchhhccCC-eEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcC
Q 016756 116 GKKLLAVIGVYTGFGS--HLNRNVYRGSWMPKGD-ALKKLEERG-VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILE 191 (383)
Q Consensus 116 ~~k~~llI~V~Sa~~~--~~RR~aIR~TW~~~~~-~l~~l~~~g-v~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~ 191 (383)
.++.++++||.|..++ +.||++.|+||++... ..+..+..| +.++|++|++++.+-+++++|.+|+++|||||++|
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 4569999999999998 8899999999998764 222233344 67889999999887789999999999999999995
Q ss_pred CC------------------cccCCChhHHHHHHHHHHhhc-CCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEe
Q 016756 192 GH------------------EEAQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCM 252 (383)
Q Consensus 192 d~------------------~DsY~nLt~Kt~~~f~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~ 252 (383)
| .|++.|+|.||+++|+|+... ++++|++|+|||+|||++.+++.|+. .+...+|+|.+
T Consensus 157 -f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v 234 (382)
T PTZ00210 157 -TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRY 234 (382)
T ss_pred -cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEee
Confidence 9 777788999999999999999 79999999999999999999999976 45667999987
Q ss_pred ecC-CccccCCCcccccCccccCCCCCCCccccCCeEEECHHHHHHHHHhccc--C---------------CCCCCchHH
Q 016756 253 KSG-DVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYININSAS--L---------------KTYAHDDTS 314 (383)
Q Consensus 253 ~~g-~pir~~~~K~y~p~~~~f~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~--l---------------~~~~~EDV~ 314 (383)
... .|.+ +.|||||+|+||+||+|+|+.|+...+. + -.+.+||++
T Consensus 235 ~~~~~p~R-----------------d~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiM 297 (382)
T PTZ00210 235 NYYNRIWR-----------------RNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVM 297 (382)
T ss_pred CCCCcccc-----------------CCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHH
Confidence 532 2222 2379999999999999999999876443 1 246899999
Q ss_pred HHHHh-hhCC
Q 016756 315 VGSWM-MGVR 323 (383)
Q Consensus 315 vG~wl-~~l~ 323 (383)
+|.|+ .++.
T Consensus 298 vG~vLr~~~k 307 (382)
T PTZ00210 298 VGMILREKVV 307 (382)
T ss_pred HHHHHHHhcC
Confidence 99999 3443
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.80 E-value=3.3e-19 Score=171.15 Aligned_cols=192 Identities=18% Similarity=0.205 Sum_probs=99.7
Q ss_pred eEEEEEEEcCCCCHH-HHHHHHHHhccCCccchhhccCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccC
Q 016756 119 LLAVIGVYTGFGSHL-NRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQ 197 (383)
Q Consensus 119 ~~llI~V~Sa~~~~~-RR~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY 197 (383)
-.|+|+|+|++++++ |-.+|.+||++... .+. |+... ..+..|..+. ..+++ .++...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~--------~~~--~ifsd------~~d~~l~~~~--~~~l~-~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN--------KQT--FIFSD------AEDPSLPTVT--GVHLV-NPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG--------GGE--EEEES------S--HHHHHHH--GGGEE-E-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC--------Cce--EEecC------cccccccccc--ccccc-cCCCcchh
Confidence 358999999998876 55899999999874 333 43221 1234555442 22344 44555554
Q ss_pred CChhHHHHHHHHHHhhc-CCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCC-cccccCccccCC
Q 016756 198 EELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGR-QWYEPEWWKFGD 275 (383)
Q Consensus 198 ~nLt~Kt~~~f~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~-K~y~p~~~~f~~ 275 (383)
...+++.++.+.+.... ++++|++++|||+||++++|.++|..+++..++|+|+.....++..... .... .
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~-------~ 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNK-------S 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccc-------c
Confidence 44444444444443333 7899999999999999999999999999999999999864433322000 0000 0
Q ss_pred CCCCCccccC-CeEEECHHHHHHHHH---hcccCCCC----CCchHHHHHHhhh-CCCeEeeCCCcccCC
Q 016756 276 GKSYFRHAAG-SIFVLSRNLAQYINI---NSASLKTY----AHDDTSVGSWMMG-VRATYKDDNRFCCSS 336 (383)
Q Consensus 276 ~~~Yp~y~~G-~gYvlS~dla~~I~~---~~~~l~~~----~~EDV~vG~wl~~-l~v~~id~~~f~~~~ 336 (383)
...-+.|++| +||+||+.++++|.. ........ ..||+.+|.|+.. +||..++.+.|....
T Consensus 140 ~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~ 209 (252)
T PF02434_consen 140 KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHL 209 (252)
T ss_dssp ------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SS
T ss_pred CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccC
Confidence 1223356655 699999999999942 22222222 4899999999998 999999988876443
No 8
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.79 E-value=4e-20 Score=152.42 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=58.0
Q ss_pred CchhHHHHHHHHHHHHHHHhccccCcccchHHHH-------Hhhhhc-ccCCCcc----------ccccccccccchhhh
Q 016756 23 TSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLS-------NFLKKS-MEQRPKV----------LTVEDKLMLLGCKDL 84 (383)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~ 84 (383)
|+||+++||++|||+|+|||||||..||+.+... +++... .+|+++. .+|.++++ +||+|
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~--aIq~L 78 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHE--AIQSL 78 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHHHHHHHH--HHHHH
Confidence 6899999999999999999999998888765532 122222 3444332 24555555 56899
Q ss_pred hhhHHHhhhchhhhhhc
Q 016756 85 ERRIVEAEMDLTLAKSQ 101 (383)
Q Consensus 85 ~~~~~~le~~l~~~~~~ 101 (383)
||+|++||||||+||++
T Consensus 79 dKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 79 DKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999974
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.60 E-value=4.9e-15 Score=149.05 Aligned_cols=175 Identities=18% Similarity=0.290 Sum_probs=130.1
Q ss_pred CCCCceEEEEEEEcCCCCHHHH-HHHHHHhccCCccchhhccCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCC
Q 016756 114 SSGKKLLAVIGVYTGFGSHLNR-NVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEG 192 (383)
Q Consensus 114 ~~~~k~~llI~V~Sa~~~~~RR-~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d 192 (383)
-..++..|++.|.|++.++.-| +.+-+||++... ++ .|+--. +.++...+.=+ .+ +
T Consensus 86 ~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~-------~~---~f~s~~-----------~s~~~~~f~~v-~~-~ 142 (364)
T KOG2246|consen 86 WLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD-------KG---IFFSPT-----------LSKDDSRFPTV-YY-N 142 (364)
T ss_pred ccCCCceEEEEEEecCcCceeehhhhhcccccccC-------cc---eecCcc-----------CCCCCCcCcee-ec-c
Confidence 3456799999999999888755 699999999874 22 243310 11111233223 35 5
Q ss_pred CcccCCChhHHHHHHHHHHhhc--CCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccccCc
Q 016756 193 HEEAQEELPKKAKFFFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEW 270 (383)
Q Consensus 193 ~~DsY~nLt~Kt~~~f~wa~~~--~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~ 270 (383)
..|+|+++..||...|+++.++ .+++|++|+|||||+.+++|..+|..+.+.+.+|+|+... -|
T Consensus 143 ~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~----------~~---- 208 (364)
T KOG2246|consen 143 LPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK----------SY---- 208 (364)
T ss_pred CCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc----------cc----
Confidence 8999999999999999999866 8999999999999999999999999999999999998641 01
Q ss_pred cccCCCCCCCccccCCeEEECHHHHHHHHH----hcc-cCCCC--CCchHHHHHHhhhCCCeEeeCCC
Q 016756 271 WKFGDGKSYFRHAAGSIFVLSRNLAQYINI----NSA-SLKTY--AHDDTSVGSWMMGVRATYKDDNR 331 (383)
Q Consensus 271 ~~f~~~~~Yp~y~~G~gYvlS~dla~~I~~----~~~-~l~~~--~~EDV~vG~wl~~l~v~~id~~~ 331 (383)
..+.|- -+|++|++|+.+.+.++. +.. ....+ ..||.-||.|+..+||...|.+.
T Consensus 209 ----~~~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~d 270 (364)
T KOG2246|consen 209 ----FQNGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDERD 270 (364)
T ss_pred ----cccccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCchh
Confidence 112221 256799999998777653 322 22333 39999999999999998887753
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.31 E-value=1.3e-10 Score=120.26 Aligned_cols=180 Identities=17% Similarity=0.227 Sum_probs=111.5
Q ss_pred ceEEEEEEEcCCCCHH-HHHHHHHHhccCCccchhhccCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCC---C
Q 016756 118 KLLAVIGVYTGFGSHL-NRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEG---H 193 (383)
Q Consensus 118 k~~llI~V~Sa~~~~~-RR~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d---~ 193 (383)
--.|+++|.++.+..+ |+..|+.+|.+..- +|.. |+.....+.. .+. .---|.+-.| |
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-------rg~v--~ld~~~~~~~--~~~-------~~P~i~is~d~s~f 182 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQM-------RGHV--WLEEQVSPEE--GDD-------SLPPIMVSEDTSRF 182 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCcccc-------eeEE--EecccCCCCC--CcC-------CCCCEEeCCCcccc
Confidence 3578889999888775 66899999998542 3432 4333221100 000 0011111000 1
Q ss_pred -cccCCChhHHHH---HHHHHHhhc-CCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCccccc
Q 016756 194 -EEAQEELPKKAK---FFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEP 268 (383)
Q Consensus 194 -~DsY~nLt~Kt~---~~f~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p 268 (383)
-++..+...... +..+..... ++++|++.+|||+|+++++|++.|..+++....|+|......
T Consensus 183 ~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~------------ 250 (537)
T PLN03153 183 RYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH------------ 250 (537)
T ss_pred cccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc------------
Confidence 011122222211 233333333 999999999999999999999999999999999999764110
Q ss_pred CccccCCCCCCC--ccc-cCCeEEECHHHHHHHHHhcc-cCC---CCCCchHHHHHHhhhCCCeEeeCCCcc
Q 016756 269 EWWKFGDGKSYF--RHA-AGSIFVLSRNLAQYININSA-SLK---TYAHDDTSVGSWMMGVRATYKDDNRFC 333 (383)
Q Consensus 269 ~~~~f~~~~~Yp--~y~-~G~gYvlS~dla~~I~~~~~-~l~---~~~~EDV~vG~wl~~l~v~~id~~~f~ 333 (383)
..+.++ .|+ +|+||+||+.+++.|..... ... ...-+|..+|.|+..+||...++.+|.
T Consensus 251 ------~qn~~f~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfh 316 (537)
T PLN03153 251 ------SANSYFSHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFH 316 (537)
T ss_pred ------ccccccccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcc
Confidence 001111 233 56799999999999876422 122 224588889999999999888888773
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0056 Score=63.92 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=69.2
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccccCccccCCCCCCCcc
Q 016756 205 KFFFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRH 282 (383)
Q Consensus 205 ~~~f~wa~~~--~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~~~~~Yp~y 282 (383)
.+.+.++.++ .+++|++-+-|++|||...|++++.....+.++|+|.-. .-+.+ .
T Consensus 84 s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~------------------~~gs~-r---- 140 (681)
T KOG3708|consen 84 SMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA------------------EDGSG-R---- 140 (681)
T ss_pred HHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh------------------hCccC-c----
Confidence 3455566665 789999999999999999999999998888999998221 00111 1
Q ss_pred ccC-CeEEECHHHHHHHHHhcccCC---CCCCchHHHHHHhh
Q 016756 283 AAG-SIFVLSRNLAQYININSASLK---TYAHDDTSVGSWMM 320 (383)
Q Consensus 283 ~~G-~gYvlS~dla~~I~~~~~~l~---~~~~EDV~vG~wl~ 320 (383)
|.+ .||+||+.++..|-.|-.-.. .-.-.|+.+|.|+.
T Consensus 141 C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~ 182 (681)
T KOG3708|consen 141 CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQ 182 (681)
T ss_pred cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHH
Confidence 655 599999999999976533222 22567899999975
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=94.89 E-value=0.47 Score=43.18 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=53.6
Q ss_pred EEEEcCCCCHHHHHHHHHHhccCCccchhhccCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcC----CCcccCC
Q 016756 123 IGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILE----GHEEAQE 198 (383)
Q Consensus 123 I~V~Sa~~~~~RR~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~----d~~DsY~ 198 (383)
|.|.|-+.+.+||+.|.+..... |+.+.|+=|..+.. ++. .+....++.-.... ...-+--
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gEi 68 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGEI 68 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcceE
Confidence 34566788899999998876654 45566776664321 111 11111121111110 0111111
Q ss_pred ChhHHHHHHHHHHhhcCCceEEEEEcCCceecHH
Q 016756 199 ELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLE 232 (383)
Q Consensus 199 nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~ 232 (383)
.=.+-.+..++-+++ .+.++.+-.-||+.++.+
T Consensus 69 GC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 69 GCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred eehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 225556677777776 578899999999999865
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.51 E-value=1.1 Score=40.67 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=57.3
Q ss_pred HHHHHhhcCCceEEEEEcCCceecHHHHHHHhhcc-CCCCceEEEEeecCC--ccccCCCcccccCcc-ccCC-CCCC-C
Q 016756 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS-RGQESAYIGCMKSGD--VVTEEGRQWYEPEWW-KFGD-GKSY-F 280 (383)
Q Consensus 207 ~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~-~~~~~~YiG~~~~g~--pir~~~~K~y~p~~~-~f~~-~~~Y-p 280 (383)
.+.++.+..+.+|++.+|||+.+.++.|..++... .+.-....|.....+ ..-.....++...+. .+.. ...+ .
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRALGV 156 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B----
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhcccce
Confidence 34666666679999999999999999888888776 343333334332111 000000111000000 0111 1111 1
Q ss_pred ccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCCe
Q 016756 281 RHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 325 (383)
Q Consensus 281 ~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v~ 325 (383)
.++.|++.++.+++++.+-.-.. ....||..++.-+...|.+
T Consensus 157 ~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 157 AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 34679999999999998853222 3445999999877766543
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.09 E-value=1.2 Score=44.98 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=83.9
Q ss_pred CeEEEEeecccCCCCchhhHHHHHHhhhCCC--eeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHH
Q 016756 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKD--FLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 233 (383)
Q Consensus 156 gv~vrFViG~s~~~~~~~~~~I~~E~~~~~D--Il~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~ 233 (383)
.+.|.++...+.+. ..+.+++=.++|.+ +..+.+ ..-.....|.-...+ +.+..+.+|++..|+|+.+.++-
T Consensus 70 ~~EIivvdd~s~D~---t~~iv~~~~~~~p~~~i~~v~~--~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~ 143 (373)
T TIGR03472 70 GFQMLFGVQDPDDP---ALAVVRRLRADFPDADIDLVID--ARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDY 143 (373)
T ss_pred CeEEEEEeCCCCCc---HHHHHHHHHHhCCCCceEEEEC--CCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhH
Confidence 46777776554332 12233332345655 322211 111233456655544 34457899999999999999999
Q ss_pred HHHHhhccCCCCce-EEEEeecCCccccCCC--------cccccCccccCCCCCCCccccCCeEEECHHHHHHHHHhccc
Q 016756 234 LIGLLDRSRGQESA-YIGCMKSGDVVTEEGR--------QWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYININSAS 304 (383)
Q Consensus 234 L~~~L~~~~~~~~~-YiG~~~~g~pir~~~~--------K~y~p~~~~f~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~ 304 (383)
|.+.+.... .+++ .+++...+.+...... -++.|... ......-+.+|.|+.+++.+++.+.+-.-...
T Consensus 144 L~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~~~ 221 (373)
T TIGR03472 144 LRQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVM-VARALGRARFCFGATMALRRATLEAIGGLAAL 221 (373)
T ss_pred HHHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHH-HHHhccCCccccChhhheeHHHHHHcCChHHh
Confidence 988887763 2222 2222211111000000 01111100 00000113458899999999999988432221
Q ss_pred CCCCCCchHHHHHHhhhCCCe
Q 016756 305 LKTYAHDDTSVGSWMMGVRAT 325 (383)
Q Consensus 305 l~~~~~EDV~vG~wl~~l~v~ 325 (383)
...-.||..+|.-+...|.+
T Consensus 222 -~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 222 -AHHLADDYWLGELVRALGLR 241 (373)
T ss_pred -cccchHHHHHHHHHHHcCCe
Confidence 12235999999987766543
No 15
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=93.89 E-value=0.08 Score=48.14 Aligned_cols=130 Identities=14% Similarity=0.057 Sum_probs=77.5
Q ss_pred ChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccccCccccCC---
Q 016756 199 ELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGD--- 275 (383)
Q Consensus 199 nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~~--- 275 (383)
....|.-.......+..+.++++-.|+|+.|+++-|.+.+..+....--.+.++..+.+...-. ...+..+..+.+
T Consensus 14 g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 14 GCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFW-SRLEAAFFNFLPGVL 92 (175)
T ss_pred CCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHH-HHHHHHHHhHHHHHH
Confidence 3456666666544433678999999999999999999988876432221222222221111100 001111100000
Q ss_pred -CCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCCeEeeCC
Q 016756 276 -GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDN 330 (383)
Q Consensus 276 -~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v~~id~~ 330 (383)
--.-.+++.|+.+++.+++.+.+---. .+..+-.||..+|..+...|.+.+-.+
T Consensus 93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~~-~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 93 QALGGAPFAWGGSMAFRREALEEIGGFE-ALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred HHhcCCCceecceeeeEHHHHHHcccHH-HHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 012467899999999999998773211 123456999999999988877665443
No 16
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.59 E-value=3.2 Score=42.14 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=80.8
Q ss_pred CeEEEEeecccCCCCchhhHHHHHHhhhCC---CeeEcCCCcccCCChhHHH---HHHHHHHhhc-CCceEEEEEcCCce
Q 016756 156 GVVIRFVIGRSANRGDSLDRKIDAENRETK---DFLILEGHEEAQEELPKKA---KFFFSTAVQI-WDAEFYVKVDDNID 228 (383)
Q Consensus 156 gv~vrFViG~s~~~~~~~~~~I~~E~~~~~---DIl~l~d~~DsY~nLt~Kt---~~~f~wa~~~-~~a~fvlKvDDDvf 228 (383)
...|.+|-..|.+.. .+.+++-.+++. .+.++. ..+.-.+-..|. ..+++.+.+. ++.+|++.+|+|+.
T Consensus 70 ~~eIIVVDd~StD~T---~~i~~~~~~~~~~~~~i~vi~-~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~ 145 (384)
T TIGR03469 70 KLHVILVDDHSTDGT---ADIARAAARAYGRGDRLTVVS-GQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA 145 (384)
T ss_pred ceEEEEEeCCCCCcH---HHHHHHHHHhcCCCCcEEEec-CCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC
Confidence 356667766554322 222222222333 344342 222122234553 3355555544 44899999999999
Q ss_pred ecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccc---------------cCccccCCCCCCCccccCCeEEECHH
Q 016756 229 LDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE---------------PEWWKFGDGKSYFRHAAGSIFVLSRN 293 (383)
Q Consensus 229 Vn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~---------------p~~~~f~~~~~Yp~y~~G~gYvlS~d 293 (383)
+.++.|.+.++.....+...++.... ... . .+++ |..| ..........+.|++.+++++
T Consensus 146 ~~p~~l~~lv~~~~~~~~~~vs~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~lirr~ 219 (384)
T TIGR03469 146 HGPDNLARLVARARAEGLDLVSLMVR---LRC-E-SFWEKLLIPAFVFFFQKLYPFRW-VNDPRRRTAAAAGGCILIRRE 219 (384)
T ss_pred CChhHHHHHHHHHHhCCCCEEEeccc---ccC-C-CHHHHHHHHHHHHHHHHhcchhh-hcCCCccceeecceEEEEEHH
Confidence 99988888877653322222222111 000 1 1100 0000 001112234578999999999
Q ss_pred HHHHHHHhcccCCCCCCchHHHHHHhhhCC
Q 016756 294 LAQYININSASLKTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 294 la~~I~~~~~~l~~~~~EDV~vG~wl~~l~ 323 (383)
+.+.+---...... ..||+.++.-+...|
T Consensus 220 ~~~~vGGf~~~~~~-~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 220 ALERIGGIAAIRGA-LIDDCTLAAAVKRSG 248 (384)
T ss_pred HHHHcCCHHHHhhC-cccHHHHHHHHHHcC
Confidence 99988322111122 479999998776554
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.49 E-value=13 Score=33.38 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=78.6
Q ss_pred CeEEEEeecccCCCCchhhHHHHHHhhhCC--CeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHH
Q 016756 156 GVVIRFVIGRSANRGDSLDRKIDAENRETK--DFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 233 (383)
Q Consensus 156 gv~vrFViG~s~~~~~~~~~~I~~E~~~~~--DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~ 233 (383)
.+.+.+|...+.+ ...+.+++-.+.|. ++.++..... .....|... +..+.+....+|++..|+|+.+.++.
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~ 103 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEK--VGINPKVNN-LIKGYEEARYDILVISDSDISVPPDY 103 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCc--CCCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhH
Confidence 4677777766542 22234444444554 3322211111 122344433 34455556789999999999999988
Q ss_pred HHHHhhccCCCCceEEEEeecCCccccCCCcccccCccccCCCCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchH
Q 016756 234 LIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDT 313 (383)
Q Consensus 234 L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV 313 (383)
|...+.... .+. +|.+.. .++.|++.++.+++.+.+-.-.. ...+..||.
T Consensus 104 l~~l~~~~~-~~~--~~~v~~--------------------------~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~ 153 (196)
T cd02520 104 LRRMVAPLM-DPG--VGLVTC--------------------------LCAFGKSMALRREVLDAIGGFEA-FADYLAEDY 153 (196)
T ss_pred HHHHHHHhh-CCC--CCeEEe--------------------------ecccCceeeeEHHHHHhccChHH-HhHHHHHHH
Confidence 888877642 221 122210 04578999999999998743321 222347999
Q ss_pred HHHHHhhhCCCeE
Q 016756 314 SVGSWMMGVRATY 326 (383)
Q Consensus 314 ~vG~wl~~l~v~~ 326 (383)
.++.-+...|.+.
T Consensus 154 ~l~~rl~~~G~~i 166 (196)
T cd02520 154 FLGKLIWRLGYRV 166 (196)
T ss_pred HHHHHHHHcCCeE
Confidence 9998777666443
No 18
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=89.14 E-value=4.6 Score=34.51 Aligned_cols=116 Identities=12% Similarity=-0.007 Sum_probs=67.3
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCccchhhccCCeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccCCChhHH
Q 016756 124 GVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKK 203 (383)
Q Consensus 124 ~V~Sa~~~~~RR~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY~nLt~K 203 (383)
.|.+-+...+||+.+++.-.. .|+.+.|+-|-.+...+ ...+......+..........-+--.-.+-
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~----------~~~~~~~~~Avd~~~~~--~~~~~~~~~~~~~~~~~~~l~~gEiGC~lS 70 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAA----------LGLDFEFFDAVDGKDLS--EEELAALYDALFLPRYGRPLTPGEIGCFLS 70 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHH----------cCCCeEEEeccccccCC--HHHHHHHhHHHhhhhcCCCCChhhHHHHHH
Confidence 455677788999999985443 35666677766432111 112222111000000000111111222445
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccccCccccCCCCCCCccc
Q 016756 204 AKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHA 283 (383)
Q Consensus 204 t~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~~~~~Yp~y~ 283 (383)
.+..++-+++ .+.++.+-..||+.+..+
T Consensus 71 H~~~w~~~~~-~~~~~alIlEDDv~~~~~--------------------------------------------------- 98 (128)
T cd06532 71 HYKLWQKIVE-SNLEYALILEDDAILDPD--------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHH-cCCCeEEEEccCcEECCC---------------------------------------------------
Confidence 5566666666 467899999999988776
Q ss_pred cCCeEEECHHHHHHHHHhcc
Q 016756 284 AGSIFVLSRNLAQYININSA 303 (383)
Q Consensus 284 ~G~gYvlS~dla~~I~~~~~ 303 (383)
+..+|++|+..|+++.....
T Consensus 99 ~~~~Y~vs~~~A~~ll~~~~ 118 (128)
T cd06532 99 GTAGYLVSRKGAKKLLAALE 118 (128)
T ss_pred CceEEEeCHHHHHHHHHhCC
Confidence 34599999999999987554
No 19
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.97 E-value=9.3 Score=34.28 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=60.4
Q ss_pred HHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCC-CCceEEEEeecCCccccCCCcccccCcc------ccCCCCCCC
Q 016756 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG-QESAYIGCMKSGDVVTEEGRQWYEPEWW------KFGDGKSYF 280 (383)
Q Consensus 208 f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~~YiG~~~~g~pir~~~~K~y~p~~~------~f~~~~~Yp 280 (383)
+.++.+..+.+|++.+|+|..+.++.|.+++..+.. ....+.|.....++-. ....+...++. ....+..++
T Consensus 74 ~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (229)
T cd04192 74 LTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKS-LLAKFQRLDWLSLLGLIAGSFGLGKP 152 (229)
T ss_pred HHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCcc-HHHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 455666678899999999999999888888875433 3334444332111000 00000000000 000123355
Q ss_pred ccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHH
Q 016756 281 RHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGS 317 (383)
Q Consensus 281 ~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~ 317 (383)
..+.|+++++++++.+.+-.-... .....||..++.
T Consensus 153 ~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~eD~~~~~ 188 (229)
T cd04192 153 FMCNGANMAYRKEAFFEVGGFEGN-DHIASGDDELLL 188 (229)
T ss_pred cccccceEEEEHHHHHHhcCCccc-cccccCCHHHHH
Confidence 667899999999999988543222 223456666654
No 20
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=87.85 E-value=21 Score=32.41 Aligned_cols=116 Identities=8% Similarity=0.005 Sum_probs=63.3
Q ss_pred HHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCC-ceEEEEeecC--CccccCCCccccc-------CccccCCC
Q 016756 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQE-SAYIGCMKSG--DVVTEEGRQWYEP-------EWWKFGDG 276 (383)
Q Consensus 207 ~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~-~~YiG~~~~g--~pir~~~~K~y~p-------~~~~f~~~ 276 (383)
.+..+.+..+.+|++.+|||..+.++.|...++.....+ .+..|+.... .+... ...+... .+.....
T Consensus 72 a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 149 (249)
T cd02525 72 GLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQK-AIAVAQSSPLGSGGSAYRGGA- 149 (249)
T ss_pred HHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHH-HHHHHhhchhccCCccccccc-
Confidence 455666666789999999999999888888886543333 3333443211 11100 0000000 0000000
Q ss_pred CCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCCeE
Q 016756 277 KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATY 326 (383)
Q Consensus 277 ~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v~~ 326 (383)
..+-.++.|.+.++++++.+.+-..... ....||..++.-+...|.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 150 VKIGYVDTVHHGAYRREVFEKVGGFDES--LVRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred cccccccccccceEEHHHHHHhCCCCcc--cCccchhHHHHHHHHcCcEE
Confidence 0001145678888999998877432221 23479999987666555443
No 21
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=86.36 E-value=8.6 Score=32.00 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=46.3
Q ss_pred HHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCC-CCceEEEEee-cCCc--cccCCC---ccccc-CccccCCCCCC
Q 016756 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG-QESAYIGCMK-SGDV--VTEEGR---QWYEP-EWWKFGDGKSY 279 (383)
Q Consensus 208 f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~~YiG~~~-~g~p--ir~~~~---K~y~p-~~~~f~~~~~Y 279 (383)
+..+.++...+|++.+|||.++..+.|..+++.... ...+.+|... .... ...... .+... ..........-
T Consensus 70 ~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PF00535_consen 70 RNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWK 149 (169)
T ss_dssp HHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTT
T ss_pred ccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCC
Confidence 333444455669999999999988766666665543 3445555543 1111 111110 01110 00000111233
Q ss_pred CccccCCeEEECHHHHHHH
Q 016756 280 FRHAAGSIFVLSRNLAQYI 298 (383)
Q Consensus 280 p~y~~G~gYvlS~dla~~I 298 (383)
.+++.|++.++++++.+.+
T Consensus 150 ~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 150 ISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp SSEESSSCEEEEEHHHHHC
T ss_pred cccccccEEEEEHHHHHhh
Confidence 4567888999999887754
No 22
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=85.58 E-value=2.5 Score=37.66 Aligned_cols=112 Identities=13% Similarity=0.003 Sum_probs=64.1
Q ss_pred EEEEEcCCceecHHHHHHHhhccCCCCceEEE--EeecCCccccCCCcccccCcc----c---cCCCCCCCccccCCeEE
Q 016756 219 FYVKVDDNIDLDLEGLIGLLDRSRGQESAYIG--CMKSGDVVTEEGRQWYEPEWW----K---FGDGKSYFRHAAGSIFV 289 (383)
Q Consensus 219 fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG--~~~~g~pir~~~~K~y~p~~~----~---f~~~~~Yp~y~~G~gYv 289 (383)
||+-+|+|+.+..+-|.+.+.... .+++-++ .... .+....-.++..-++. . .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIF-RNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEe-cCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999998888877665 3332222 2211 0000001112211110 0 00112356678999999
Q ss_pred ECHHHHHHHHHhcccCCCCCCchHHHHHHhh--hCCCeEeeCCCccc
Q 016756 290 LSRNLAQYININSASLKTYAHDDTSVGSWMM--GVRATYKDDNRFCC 334 (383)
Q Consensus 290 lS~dla~~I~~~~~~l~~~~~EDV~vG~wl~--~l~v~~id~~~f~~ 334 (383)
+++++.+.+.--. -.....||..+|.=+. |..+..+++....+
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~ 123 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYT 123 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceee
Confidence 9999999884222 2345569999987654 44455666653333
No 23
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=85.50 E-value=36 Score=32.77 Aligned_cols=121 Identities=13% Similarity=0.223 Sum_probs=66.3
Q ss_pred HHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEE-Eeec--CCccccCC--------Cccccc-Ccccc--
Q 016756 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIG-CMKS--GDVVTEEG--------RQWYEP-EWWKF-- 273 (383)
Q Consensus 208 f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG-~~~~--g~pir~~~--------~K~y~p-~~~~f-- 273 (383)
...+.+....+|++..|+|+.+..+-|..+++.....+...+| .+.. +....... ..|... .|...
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 3344444568999999999999988887777665433333333 2110 00000000 001000 00000
Q ss_pred -------CCCCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHH--HhhhCCCeEee
Q 016756 274 -------GDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGS--WMMGVRATYKD 328 (383)
Q Consensus 274 -------~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~--wl~~l~v~~id 328 (383)
.......++++|+++++++++...+-.-...+..+..||+-+.. |..|..+..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p 218 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVP 218 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEee
Confidence 00122345678999999999999885444445555679988754 55565544433
No 24
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=84.89 E-value=24 Score=32.01 Aligned_cols=122 Identities=12% Similarity=-0.031 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHh---hccCCCCceE-EEEeecCCccccCCCcccccCcc----
Q 016756 200 LPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLL---DRSRGQESAY-IGCMKSGDVVTEEGRQWYEPEWW---- 271 (383)
Q Consensus 200 Lt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L---~~~~~~~~~Y-iG~~~~g~pir~~~~K~y~p~~~---- 271 (383)
...=.-.+++.+.. .+++|++..|+|+.+.++.|..++ ......+.+. +|+.............+....++
T Consensus 60 ~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (237)
T cd02526 60 IAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQ 138 (237)
T ss_pred hHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceec
Confidence 34444455665554 378999999999999998888885 3222333322 23321110000000001111100
Q ss_pred -ccCCCCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCC
Q 016756 272 -KFGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 272 -~f~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~ 323 (383)
.......-..++.|++.++++++.+.+-.-...+ ....||+-++.-+...|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G 190 (237)
T cd02526 139 KEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKG 190 (237)
T ss_pred ccccCCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcC
Confidence 0000011123456778899999988874322211 23468999887665554
No 25
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.95 E-value=30 Score=30.64 Aligned_cols=95 Identities=16% Similarity=0.047 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccC-CCCceEEEEeecCCccccCCCcccccCccccCCCCCC
Q 016756 201 PKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSY 279 (383)
Q Consensus 201 t~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~-~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~~~~~Y 279 (383)
..-.-..++++. ..+.+|++..|||..+..+-|...+.... +.-.++.|... . .++
T Consensus 65 ~~~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~-------------~~~--- 121 (202)
T cd04185 65 AGGFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------D-------------PDG--- 121 (202)
T ss_pred hhHHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------c-------------CCC---
Confidence 333445566665 46789999999999999887777766543 22222222111 0 001
Q ss_pred CccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCC
Q 016756 280 FRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 280 p~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~ 323 (383)
.+++.++.+++.+.+-...... ....||+.++.-+...|
T Consensus 122 ----~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G 160 (202)
T cd04185 122 ----SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAG 160 (202)
T ss_pred ----ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcC
Confidence 3456789999988774322222 23469999887665554
No 26
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=83.93 E-value=21 Score=32.91 Aligned_cols=112 Identities=21% Similarity=0.188 Sum_probs=58.5
Q ss_pred HHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCC-CCceEEEEeecCCcc-ccCCCc--ccccCccc-cCCCCCCCcc
Q 016756 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG-QESAYIGCMKSGDVV-TEEGRQ--WYEPEWWK-FGDGKSYFRH 282 (383)
Q Consensus 208 f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~~YiG~~~~g~pi-r~~~~K--~y~p~~~~-f~~~~~Yp~y 282 (383)
+..+.+..+.+|++-+|+|+.+..+-|.+.++.... ...+..|....-.+. ...... |.....+. +......+..
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTVG 180 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCeee
Confidence 444445556699999999999998888887777642 223333333211110 000001 00000000 0000112344
Q ss_pred ccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCCe
Q 016756 283 AAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 325 (383)
Q Consensus 283 ~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v~ 325 (383)
+.|+++++.+++.+ ........||..++.-+...|..
T Consensus 181 ~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~ 217 (251)
T cd06439 181 ANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYR 217 (251)
T ss_pred ecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCe
Confidence 66777777777665 22233457999998877666543
No 27
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.43 E-value=25 Score=29.38 Aligned_cols=78 Identities=10% Similarity=0.162 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCceecHHHHHHHhhccCCCCce-EEEEeecCCccccCCCcccccCccccCCCCCCCccccCCeEEECHH
Q 016756 215 WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESA-YIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRN 293 (383)
Q Consensus 215 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~-YiG~~~~g~pir~~~~K~y~p~~~~f~~~~~Yp~y~~G~gYvlS~d 293 (383)
.+.+|++..|||..+..+.+...++.....+.+ .++.. +.|++.+++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~ 122 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------VSGAFLLVRRE 122 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------CceeeEeeeHH
Confidence 478999999999999998888887754333222 11111 56889999999
Q ss_pred HHHHHHHhcccCCCCCCchHHHHHHhhhCC
Q 016756 294 LAQYININSASLKTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 294 la~~I~~~~~~l~~~~~EDV~vG~wl~~l~ 323 (383)
+.+.+-.-...... ..||..+..-+...|
T Consensus 123 ~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g 151 (166)
T cd04186 123 VFEEVGGFDEDFFL-YYEDVDLCLRARLAG 151 (166)
T ss_pred HHHHcCCCChhhhc-cccHHHHHHHHHHcC
Confidence 88876422221112 568888876555444
No 28
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=82.36 E-value=9.3 Score=34.55 Aligned_cols=119 Identities=12% Similarity=0.035 Sum_probs=66.3
Q ss_pred HHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceE-E-EEee--cCCcc---cc-C--CCcccccCccccCCCC
Q 016756 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAY-I-GCMK--SGDVV---TE-E--GRQWYEPEWWKFGDGK 277 (383)
Q Consensus 208 f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~Y-i-G~~~--~g~pi---r~-~--~~K~y~p~~~~f~~~~ 277 (383)
+..+.+..+.+|++..|+|+++.++.|..++......+++. + |... ..... .. . ....+.... ......
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 154 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVI-QPGRDR 154 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHH-HHHHhh
Confidence 34455556789999999999999998888887764433332 1 2111 01000 00 0 000000000 000001
Q ss_pred CCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCC--CeEeeCC
Q 016756 278 SYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR--ATYKDDN 330 (383)
Q Consensus 278 ~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~--v~~id~~ 330 (383)
....++.|++.++++++.+.+-.-. ..+..||..++.-+...+ +..+++.
T Consensus 155 ~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~ 206 (234)
T cd06421 155 WGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEP 206 (234)
T ss_pred cCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCc
Confidence 1245678999999999998874221 234579999998776655 4444444
No 29
>PRK11204 N-glycosyltransferase; Provisional
Probab=81.98 E-value=62 Score=32.79 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=78.0
Q ss_pred hhHHHHHHhhhCCCeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEe
Q 016756 173 LDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCM 252 (383)
Q Consensus 173 ~~~~I~~E~~~~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~ 252 (383)
..+.+++..+++..+..+. .. .| ..|.. .+..+.+..+.+|++..|+|..+..+.|.+.++.....+++ |.+
T Consensus 97 t~~~l~~~~~~~~~v~~i~-~~---~n-~Gka~-aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v 168 (420)
T PRK11204 97 TGEILDRLAAQIPRLRVIH-LA---EN-QGKAN-ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAV 168 (420)
T ss_pred HHHHHHHHHHhCCcEEEEE-cC---CC-CCHHH-HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEE
Confidence 3344555555665565442 22 23 23433 34556666788999999999999999888888776333332 333
Q ss_pred ecCCccccCCC---cccccCcccc-C-----C-CCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhC
Q 016756 253 KSGDVVTEEGR---QWYEPEWWKF-G-----D-GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV 322 (383)
Q Consensus 253 ~~g~pir~~~~---K~y~p~~~~f-~-----~-~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l 322 (383)
...+.+.+..+ +....++... + . ....+...+|.+.++.+++.+.+-.- -+....||+-++.-+...
T Consensus 169 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~---~~~~~~ED~~l~~rl~~~ 245 (420)
T PRK11204 169 TGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYW---STDMITEDIDISWKLQLR 245 (420)
T ss_pred ECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCC---CCCcccchHHHHHHHHHc
Confidence 22222222111 0000000000 0 0 00112245788899999998876321 123357999998766544
Q ss_pred C--CeEeeC
Q 016756 323 R--ATYKDD 329 (383)
Q Consensus 323 ~--v~~id~ 329 (383)
| +...++
T Consensus 246 G~~i~~~p~ 254 (420)
T PRK11204 246 GWDIRYEPR 254 (420)
T ss_pred CCeEEeccc
Confidence 4 444443
No 30
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=81.93 E-value=11 Score=32.71 Aligned_cols=96 Identities=9% Similarity=0.053 Sum_probs=57.1
Q ss_pred HHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccccCccccCCCCCCCccccCCe
Q 016756 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSI 287 (383)
Q Consensus 208 f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~~~~~Yp~y~~G~g 287 (383)
+..+.+....+|++..|+|..+..+-|...++...+. ....|..... + . ..-.....|+.
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~----~--------~-------~~~~~~~~~~~ 130 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLL----N--------E-------KLTERGIRGCN 130 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeec----c--------c-------ccceeEeccce
Confidence 3444455678999999999999988888877765322 2222322100 0 0 00012345777
Q ss_pred EEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCC
Q 016756 288 FVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 288 YvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~ 323 (383)
+++.+.....+-.-......+..||+-++.-+...|
T Consensus 131 ~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 131 MSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred EEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 888888877544333333344579999887666555
No 31
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=80.59 E-value=22 Score=29.42 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=48.6
Q ss_pred HHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCc--eEEEEeecCC----ccccCC-CcccccCccc-cC-CCC
Q 016756 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES--AYIGCMKSGD----VVTEEG-RQWYEPEWWK-FG-DGK 277 (383)
Q Consensus 207 ~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~--~YiG~~~~g~----pir~~~-~K~y~p~~~~-f~-~~~ 277 (383)
...++.+..+.+|++.+|+|..+..+.|..++......+. +..|...... .+.... .+++...... .+ ...
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSAL 148 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhee
Confidence 3444555568999999999999998888777454433332 2223322111 111000 0111100000 00 012
Q ss_pred CCCccccCCeEEECHHHHHHHH
Q 016756 278 SYFRHAAGSIFVLSRNLAQYIN 299 (383)
Q Consensus 278 ~Yp~y~~G~gYvlS~dla~~I~ 299 (383)
.+..++.|.++++++++...+-
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 149 GGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred cceeecCchHHHHHHHHHHHhC
Confidence 3445678888888888888764
No 32
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=79.41 E-value=15 Score=32.04 Aligned_cols=134 Identities=10% Similarity=0.062 Sum_probs=70.7
Q ss_pred CeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHH
Q 016756 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (383)
Q Consensus 156 gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~ 235 (383)
.+.+..|-+.|.+. ....+.+..+++..+..+. ...++ .|. ..+..+.+....+|++.+|+|.-...+.|.
T Consensus 29 ~~eiivvdd~s~d~---t~~~~~~~~~~~~~i~~i~-~~~n~----G~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 29 DYEIIFVDDGSTDR---TLEILRELAARDPRVKVIR-LSRNF----GQQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CeEEEEEeCCCCcc---HHHHHHHHHhhCCCEEEEE-ecCCC----CcH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 45665665554322 2233444444555555442 32222 222 333444444556999999999999988888
Q ss_pred HHhhccCCCCceEEEEeecCC--ccccCCCcccccCccccCCCCCCCccccCCeEEECHHHHHHHHH
Q 016756 236 GLLDRSRGQESAYIGCMKSGD--VVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYINI 300 (383)
Q Consensus 236 ~~L~~~~~~~~~YiG~~~~g~--pir~~~~K~y~p~~~~f~~~~~Yp~y~~G~gYvlS~dla~~I~~ 300 (383)
..++...+...+.+|...... ....-..+.+......+. ....+...|+.+++++++.+.+..
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLS--GVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHc--CCCCCCCCCCEEEEcHHHHHHHHh
Confidence 888765555566666543211 000000011100000011 123445678899999999998764
No 33
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.98 E-value=20 Score=31.02 Aligned_cols=113 Identities=10% Similarity=-0.021 Sum_probs=61.9
Q ss_pred HHHHHhhcCCceEEEEEcCCceecHHHHHHHhhcc--CCCCceEEEEeec-CCccccCCCcccccCccccCCCCCCCccc
Q 016756 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS--RGQESAYIGCMKS-GDVVTEEGRQWYEPEWWKFGDGKSYFRHA 283 (383)
Q Consensus 207 ~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~--~~~~~~YiG~~~~-g~pir~~~~K~y~p~~~~f~~~~~Yp~y~ 283 (383)
.+..+.+..+.+|++-.|+|..+..+.+...+... .+...+..|.... .........+...+.. ........+.
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 142 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFL---DKFLLYGMPI 142 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchh---hhHHhhcCcc
Confidence 34455555678999999999999998888887333 2344555555431 1000000111000100 0111233456
Q ss_pred cCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCC
Q 016756 284 AGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA 324 (383)
Q Consensus 284 ~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v 324 (383)
.|++.++++++.+.+-.-...+ ...||.-+..-+...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~ 181 (202)
T cd06433 143 CHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGK 181 (202)
T ss_pred cCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCC
Confidence 6788899999998875322211 23578777665554443
No 34
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=74.23 E-value=61 Score=28.51 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=61.7
Q ss_pred hhcCCceEEEEEcCCceecHHHHHHHhhc-cC-CCCceEEEEee-c---CCccccCCCcccccCcc---ccCCCCCCCcc
Q 016756 212 VQIWDAEFYVKVDDNIDLDLEGLIGLLDR-SR-GQESAYIGCMK-S---GDVVTEEGRQWYEPEWW---KFGDGKSYFRH 282 (383)
Q Consensus 212 ~~~~~a~fvlKvDDDvfVn~~~L~~~L~~-~~-~~~~~YiG~~~-~---g~pir~~~~K~y~p~~~---~f~~~~~Yp~y 282 (383)
....+.+|++..|+|..+.++.|..+++. .. +...++.|... . +.+... .+...... .-........+
T Consensus 75 ~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 151 (214)
T cd04196 75 LQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGE---SFFEYQKIKPGTSFNNLLFQNV 151 (214)
T ss_pred HHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCccc---ccccccccCCccCHHHHHHhCc
Confidence 34467899999999999998888888876 22 33334434322 1 111110 10000000 00000112345
Q ss_pred ccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhC-CCeEeeCC
Q 016756 283 AAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV-RATYKDDN 330 (383)
Q Consensus 283 ~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l-~v~~id~~ 330 (383)
..|+++++.+++++.+....... ...||..+...+... .+..+++.
T Consensus 152 ~~~~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~ 198 (214)
T cd04196 152 VTGCTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDEP 198 (214)
T ss_pred cCCceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcchh
Confidence 67889999999999875433222 467888776655443 34444433
No 35
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=73.14 E-value=20 Score=34.99 Aligned_cols=136 Identities=10% Similarity=0.061 Sum_probs=74.2
Q ss_pred CCCeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEE-EEeecC---Ccc-
Q 016756 184 TKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYI-GCMKSG---DVV- 258 (383)
Q Consensus 184 ~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~Yi-G~~~~g---~pi- 258 (383)
+.++..+. ..++.- ...=.-.+++.|....+. |++-.++|+.+..+.|.++++.....+...+ |..... +..
T Consensus 55 ~~~v~~i~-~~~NlG-~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~ 131 (305)
T COG1216 55 FPNVRLIE-NGENLG-FAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYI 131 (305)
T ss_pred CCcEEEEE-cCCCcc-chhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcch
Confidence 67887663 333221 011122566666664222 9999999999999999999888755443333 333221 110
Q ss_pred --ccC-----CCcc-cccCcc---ccCCCCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCC
Q 016756 259 --TEE-----GRQW-YEPEWW---KFGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 259 --r~~-----~~K~-y~p~~~---~f~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~ 323 (383)
... ...| +.+... .+........++.|++.++++++.+.+-.-.. --....||+-++.=+...|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 132 DRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred heeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 000 0111 111100 00000112225799999999999999865222 1233799999987555554
No 36
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=72.16 E-value=40 Score=30.17 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=48.3
Q ss_pred cCCceEEEEEcCCceecHHHHHHHhhc-cCCCCceEEEEee-cCCccccCCCcc--cc---cCcc-ccCCCCCCCccccC
Q 016756 214 IWDAEFYVKVDDNIDLDLEGLIGLLDR-SRGQESAYIGCMK-SGDVVTEEGRQW--YE---PEWW-KFGDGKSYFRHAAG 285 (383)
Q Consensus 214 ~~~a~fvlKvDDDvfVn~~~L~~~L~~-~~~~~~~YiG~~~-~g~pir~~~~K~--y~---p~~~-~f~~~~~Yp~y~~G 285 (383)
....+|++..|+|..+.++.|..+++. ..+...+.+|... .+... .....+ +. ..++ +... ..-.+.++|
T Consensus 76 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 153 (224)
T cd06442 76 AARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLL-GRKVSDPTS 153 (224)
T ss_pred HcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHc-CCCCCCCCC
Confidence 334589999999999999988888886 3455566666432 11111 000000 00 0000 0000 112345788
Q ss_pred CeEEECHHHHHHHH
Q 016756 286 SIFVLSRNLAQYIN 299 (383)
Q Consensus 286 ~gYvlS~dla~~I~ 299 (383)
++.++++++++.+-
T Consensus 154 ~~~~~~r~~~~~ig 167 (224)
T cd06442 154 GFRAYRREVLEKLI 167 (224)
T ss_pred ccchhhHHHHHHHh
Confidence 88899999999886
No 37
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=70.35 E-value=1.1e+02 Score=30.62 Aligned_cols=165 Identities=10% Similarity=0.032 Sum_probs=94.4
Q ss_pred CeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHH
Q 016756 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (383)
Q Consensus 156 gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~ 235 (383)
...+..|...+ .|..-+.+++-.+++++.+.+ ... -.+-..| ...+.++....+.++++..|-|+.+..+.|.
T Consensus 84 ~~evivv~d~~---~d~~~~~~~~~~~~~~~~~~~-~~~--~~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~ 156 (439)
T COG1215 84 RYEVIVVDDGS---TDETYEILEELGAEYGPNFRV-IYP--EKKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALR 156 (439)
T ss_pred CceEEEECCCC---ChhHHHHHHHHHhhcCcceEE-Eec--cccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHH
Confidence 35666666533 234445566666666533333 111 0122222 4456667777679999999999999999999
Q ss_pred HHhhccCCCCce-EEEEeec-CCcc-ccCCCcccccCcc-------ccCCCCCCCccccCCeEEECHHHHHHHHHhcccC
Q 016756 236 GLLDRSRGQESA-YIGCMKS-GDVV-TEEGRQWYEPEWW-------KFGDGKSYFRHAAGSIFVLSRNLAQYININSASL 305 (383)
Q Consensus 236 ~~L~~~~~~~~~-YiG~~~~-g~pi-r~~~~K~y~p~~~-------~f~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l 305 (383)
+.+......+.. +.|.... ..+. ...-.+-..-++. ...........+.|...++.+++.+.+- ...
T Consensus 157 ~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g---~~~ 233 (439)
T COG1215 157 ELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVG---GWL 233 (439)
T ss_pred HHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhC---CCC
Confidence 999987654443 3332210 0000 0001110000000 0001123577899999999999999886 233
Q ss_pred CCCCCchHHHHHHhhhCC--CeEeeCC
Q 016756 306 KTYAHDDTSVGSWMMGVR--ATYKDDN 330 (383)
Q Consensus 306 ~~~~~EDV~vG~wl~~l~--v~~id~~ 330 (383)
...--||..++..+...| +..+++.
T Consensus 234 ~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 234 EDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CCceeccHHHHHHHHHCCCeEEEeecc
Confidence 455679999999887555 4445444
No 38
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=70.32 E-value=84 Score=32.49 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=31.3
Q ss_pred HHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCc
Q 016756 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES 246 (383)
Q Consensus 207 ~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ 246 (383)
.+.++.+..+.+|++..|+|..+..+.|.+.++.....++
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~ 161 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPD 161 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCC
Confidence 4455666677899999999999999999888877644443
No 39
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=67.47 E-value=9.6 Score=37.11 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=35.0
Q ss_pred cCCeEEECHHHHHHHHHhcc-c---CCCCCCchHHHHHHhhhCCCeEeeCCCc
Q 016756 284 AGSIFVLSRNLAQYININSA-S---LKTYAHDDTSVGSWMMGVRATYKDDNRF 332 (383)
Q Consensus 284 ~G~gYvlS~dla~~I~~~~~-~---l~~~~~EDV~vG~wl~~l~v~~id~~~f 332 (383)
+|+|++||..||+.|..... . .+.+.--|-.+..|+..+++....+.+|
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~ 64 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGF 64 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCc
Confidence 78899999999999986421 1 1223346888999998888765555554
No 40
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=63.56 E-value=1.4e+02 Score=28.33 Aligned_cols=36 Identities=6% Similarity=-0.115 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhcc
Q 016756 205 KFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 241 (383)
Q Consensus 205 ~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~ 241 (383)
-.++++|.+ .+.+|++..|||+.+..+.|...++..
T Consensus 63 N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 63 NQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred HHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 345666665 478999999999999988887777654
No 41
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=61.20 E-value=56 Score=28.16 Aligned_cols=116 Identities=9% Similarity=0.065 Sum_probs=61.7
Q ss_pred hHHHHHHhhhCCCeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhc-cCCCCceEEEEe
Q 016756 174 DRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDR-SRGQESAYIGCM 252 (383)
Q Consensus 174 ~~~I~~E~~~~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~-~~~~~~~YiG~~ 252 (383)
...+..-..++..+.++. ..++.. | -..+..+.+....+|++..|+|..+.++.|.+++.. ..+...+..|..
T Consensus 43 ~~~~~~~~~~~~~~~~~~-~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 116 (185)
T cd04179 43 AEIARELAARVPRVRVIR-LSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSR 116 (185)
T ss_pred HHHHHHHHHhCCCeEEEE-ccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence 344554455565544332 232221 1 133344444444599999999999999998888886 444556666654
Q ss_pred ecCCccccCCCcccc------cCc-c-ccCCCCCCCccccCCeEEECHHHHHHHH
Q 016756 253 KSGDVVTEEGRQWYE------PEW-W-KFGDGKSYFRHAAGSIFVLSRNLAQYIN 299 (383)
Q Consensus 253 ~~g~pir~~~~K~y~------p~~-~-~f~~~~~Yp~y~~G~gYvlS~dla~~I~ 299 (383)
.....- ....++. ..+ . .+. ..-.....|+.+++++++.+.+-
T Consensus 117 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 117 FVRGGG--AGMPLLRRLGSRLFNFLIRLLL--GVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred ecCCCc--ccchHHHHHHHHHHHHHHHHHc--CCCCcCCCCceeeeHHHHHHHHH
Confidence 311100 0001000 000 0 011 11123356788899999999885
No 42
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=59.24 E-value=47 Score=30.28 Aligned_cols=110 Identities=7% Similarity=0.004 Sum_probs=57.6
Q ss_pred HHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccc----c--C-ccc---cCC-C
Q 016756 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE----P--E-WWK---FGD-G 276 (383)
Q Consensus 208 f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~----p--~-~~~---f~~-~ 276 (383)
+..+.+..+.+|++.+|.|+.+..+.|...+... ..+. +|++.......++...|.. . . ++. .+. .
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 4555556788999999999999999988855443 2232 2333221111111111110 0 0 000 000 0
Q ss_pred CCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCC
Q 016756 277 KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 277 ~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~ 323 (383)
...+..+.|++-++.+++.+.+---. .....||+.++.-+...|
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~~---~~~~~ED~~l~~rl~~~G 199 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGWN---HDTLTEDLDLSYRAQLKG 199 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCCC---CCcchhhHHHHHHHHHCC
Confidence 11112235666678888877763211 223579999987665544
No 43
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=58.88 E-value=2.2e+02 Score=29.32 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=82.3
Q ss_pred CeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHH
Q 016756 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (383)
Q Consensus 156 gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~ 235 (383)
+..+..|-..+. |...+.+++..+++..+.++. ..+ | ..|. ..++.+.+..+.+|++-.|+|..+..+.|.
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~-~~~---n-~Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~ 174 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIH-LAH---N-QGKA-IALRMGAAAARSEYLVCIDGDALLDKNAVP 174 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEE-eCC---C-CCHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHH
Confidence 456555544332 223344555555665554432 111 2 2243 345555556788999999999999999988
Q ss_pred HHhhccCCCCceEEEEeecCCccccCC---CcccccCcccc-C------CCCCCCccccCCeEEECHHHHHHHHHhcccC
Q 016756 236 GLLDRSRGQESAYIGCMKSGDVVTEEG---RQWYEPEWWKF-G------DGKSYFRHAAGSIFVLSRNLAQYININSASL 305 (383)
Q Consensus 236 ~~L~~~~~~~~~YiG~~~~g~pir~~~---~K~y~p~~~~f-~------~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l 305 (383)
..++.....++ +|.+...+.+++.. .+....++..+ + ....-+..++|.+.++.+++.+.+---.
T Consensus 175 ~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~--- 249 (444)
T PRK14583 175 YLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS--- 249 (444)
T ss_pred HHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---
Confidence 88776533333 24443222222211 11111111000 0 0000122357888999999988774222
Q ss_pred CCCCCchHHHHHHhhhCCC
Q 016756 306 KTYAHDDTSVGSWMMGVRA 324 (383)
Q Consensus 306 ~~~~~EDV~vG~wl~~l~v 324 (383)
+....||.-+|.-+...|-
T Consensus 250 ~~~i~ED~dl~~rl~~~G~ 268 (444)
T PRK14583 250 PDMITEDIDISWKLQLKHW 268 (444)
T ss_pred CCcccccHHHHHHHHHcCC
Confidence 2234699999987765553
No 44
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=57.12 E-value=1.3e+02 Score=26.23 Aligned_cols=113 Identities=11% Similarity=0.048 Sum_probs=59.2
Q ss_pred HHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCC--CCceEEEEeec--CCccccCCCcccccC----ccccCCCCCC
Q 016756 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG--QESAYIGCMKS--GDVVTEEGRQWYEPE----WWKFGDGKSY 279 (383)
Q Consensus 208 f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~--~~~~YiG~~~~--g~pir~~~~K~y~p~----~~~f~~~~~Y 279 (383)
+..+....+.+|++..|+|..+.++.|...+..... .-.++.|.... .... ....+. .|. +..+.. ..-
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~-~~~ 148 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGN-DIGKRR-LPTSHDDILKFAR-RRS 148 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCC-eecccc-CCCCHHHHHHHhc-cCC
Confidence 444555567899999999999999888887776532 33344444321 1100 000010 110 001110 011
Q ss_pred CccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhC--CCeEee
Q 016756 280 FRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV--RATYKD 328 (383)
Q Consensus 280 p~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l--~v~~id 328 (383)
+ ..|++.++.+++...+-.- -+....||..+...+... .+.+++
T Consensus 149 -~-~~~~~~~~rr~~~~~~g~~---~~~~~~eD~~~~~r~~~~g~~~~~~~ 194 (201)
T cd04195 149 -P-FNHPTVMFRKSKVLAVGGY---QDLPLVEDYALWARMLANGARFANLP 194 (201)
T ss_pred -C-CCChHHhhhHHHHHHcCCc---CCCCCchHHHHHHHHHHcCCceeccc
Confidence 1 2355667777776654221 122578999998766543 344443
No 45
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=57.04 E-value=1.5e+02 Score=26.78 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=62.3
Q ss_pred HHHHHhhc--CCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccc----cCccc-cCC---C
Q 016756 207 FFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE----PEWWK-FGD---G 276 (383)
Q Consensus 207 ~f~wa~~~--~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~----p~~~~-f~~---~ 276 (383)
.+.++.+. .+.+|++..|+|+.+.++.|..++.... .+. +|.+......++....++. +.|.. +.. .
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45566555 3579999999999999999998887754 222 2333211111111111111 00000 000 0
Q ss_pred -CC-CCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCC
Q 016756 277 -KS-YFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA 324 (383)
Q Consensus 277 -~~-Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v 324 (383)
.. --.++.|.+.++++++...+-.-. ..+..||+-++.=+...|.
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~---~~~~~eD~dl~~r~~~~G~ 196 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWD---EWCITEDSELGLRMHEAGY 196 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCC---CccccchHHHHHHHHHCCc
Confidence 00 012467888999999999874222 2235799999876655543
No 46
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.94 E-value=1e+02 Score=27.39 Aligned_cols=109 Identities=7% Similarity=-0.051 Sum_probs=57.2
Q ss_pred HHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccccCccccCCCCCCCccccCCeE
Q 016756 209 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIF 288 (383)
Q Consensus 209 ~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~~~~~Yp~y~~G~gY 288 (383)
.-+.+....+|++.+|+|..+..+.|.+.+....... ..+|.......-......+..-.++... .....+ ..+.+.
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 141 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRS-RLFGLP-YGDQGL 141 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhccccee-cccCCC-cCCceE
Confidence 3344445679999999999999888888766554333 3444322110000000000011110000 011112 235688
Q ss_pred EECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCC
Q 016756 289 VLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 289 vlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~ 323 (383)
++++++.+.+-.-.. .+..||.-++.=+...|
T Consensus 142 ~~r~~~~~~~G~fd~---~~~~ED~d~~~r~~~~G 173 (221)
T cd02522 142 FIRRELFEELGGFPE---LPLMEDVELVRRLRRRG 173 (221)
T ss_pred EEEHHHHHHhCCCCc---cccccHHHHHHHHHhCC
Confidence 999998877743222 22789998876555555
No 47
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=52.83 E-value=37 Score=34.38 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=50.7
Q ss_pred HHHHHHhhcCCceEEEEEcCCceecHH---HHHHHhhccCCCCceEEEEeecCCccccCCCcccccCccccCCCCCCC-c
Q 016756 206 FFFSTAVQIWDAEFYVKVDDNIDLDLE---GLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYF-R 281 (383)
Q Consensus 206 ~~f~wa~~~~~a~fvlKvDDDvfVn~~---~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~p~~~~f~~~~~Yp-~ 281 (383)
.++.|+.+..++++++-+|||..+.++ -+.+.|..+...++++ |+.+-. + .++...... .+...|. .
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---d-nG~~~~~~~---~~~~lyrs~ 157 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---D-NGKEHFVDD---TPSLLYRTD 157 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---c-CCcccccCC---CcceEEEec
Confidence 366666655679999999999999998 5566666665566655 333111 1 111111000 0111232 4
Q ss_pred cccCCeEEECHHHHHHH
Q 016756 282 HAAGSIFVLSRNLAQYI 298 (383)
Q Consensus 282 y~~G~gYvlS~dla~~I 298 (383)
|+.|.|.++.+++-+.+
T Consensus 158 ff~glGWml~r~~W~e~ 174 (334)
T cd02514 158 FFPGLGWMLTRKLWKEL 174 (334)
T ss_pred CCCchHHHHHHHHHHHh
Confidence 56789999999998777
No 48
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=51.61 E-value=81 Score=31.32 Aligned_cols=134 Identities=6% Similarity=0.025 Sum_probs=69.2
Q ss_pred CeEEEEeecccCCCCchhhHHHHHHhhhCCC-eeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHH
Q 016756 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKD-FLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGL 234 (383)
Q Consensus 156 gv~vrFViG~s~~~~~~~~~~I~~E~~~~~D-Il~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L 234 (383)
.+.+.+|-..|.+.. .+.+++-.+.+++ ++.. ....++ .|.. .+....++.+.+|++-.|+|.-.+++.+
T Consensus 38 ~~EIIvVDDgS~D~T---~~il~~~~~~~~~~v~~i-~~~~n~----G~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 38 EYEILLIDDGSSDNS---AEMLVEAAQAPDSHIVAI-LLNRNY----GQHS-AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CEEEEEEeCCCCCcH---HHHHHHHHhhcCCcEEEE-EeCCCC----CHHH-HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 467777776654322 2233332333444 3322 122222 2222 2223334457899999999999999999
Q ss_pred HHHhhccCCCCceEEEEeec--CCccccCCCcccccCccccCCCCCCCccccCCeEEECHHHHHHHHH
Q 016756 235 IGLLDRSRGQESAYIGCMKS--GDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYINI 300 (383)
Q Consensus 235 ~~~L~~~~~~~~~YiG~~~~--g~pir~~~~K~y~p~~~~f~~~~~Yp~y~~G~gYvlS~dla~~I~~ 300 (383)
.++++......++..|.... .++++.-.++.+.--...+ .+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~-~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT-TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88888764434554444321 1233222222221100011 13345554333 45899999999853
No 49
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=51.44 E-value=1.7e+02 Score=25.59 Aligned_cols=109 Identities=14% Similarity=0.213 Sum_probs=58.9
Q ss_pred HHHHhhcCCceEEEEEcCCceecHHHHHHHhhccC--CCCceEEEEeecCCccccCCCc----ccccCccccCCCCCCCc
Q 016756 208 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR--GQESAYIGCMKSGDVVTEEGRQ----WYEPEWWKFGDGKSYFR 281 (383)
Q Consensus 208 f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~~YiG~~~~g~pir~~~~K----~y~p~~~~f~~~~~Yp~ 281 (383)
+.++.+..+.+|++..|+|..+..+.|...++... ++..+..+... ..+.... ++.+.| . ....+..
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~-~--~~~~~~~ 147 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDED----KIDEGGKRSEPFFKPDW-S--PDLLLSQ 147 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHH----hccCCCCEeccccCCCC-C--HHHhhhc
Confidence 44444455679999999999999988888887652 33333322211 1111111 111111 0 0001111
Q ss_pred cccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCCe
Q 016756 282 HAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 325 (383)
Q Consensus 282 y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v~ 325 (383)
-+.|++-++++++.+.+-.-... ....||.-++.-+...|.+
T Consensus 148 ~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 148 NYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred CCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 23456668899988877532221 2256998888766555533
No 50
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=47.30 E-value=1.2e+02 Score=27.27 Aligned_cols=75 Identities=11% Similarity=0.152 Sum_probs=44.7
Q ss_pred eEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHH
Q 016756 157 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 236 (383)
Q Consensus 157 v~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 236 (383)
..+.+|...+. +.....+ .+...+..+.+.. .+. ..|... +..+.+..+.+|++..|+|+.+..+.|..
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~--~~~----~g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT--VPH----PGKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe--cCC----CChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 45556654442 2222233 3445566665442 221 234332 23344445889999999999999999988
Q ss_pred HhhccC
Q 016756 237 LLDRSR 242 (383)
Q Consensus 237 ~L~~~~ 242 (383)
.++...
T Consensus 98 l~~~~~ 103 (235)
T cd06434 98 MLKPFE 103 (235)
T ss_pred HHHhcc
Confidence 888765
No 51
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=46.73 E-value=2.7e+02 Score=26.70 Aligned_cols=164 Identities=12% Similarity=0.079 Sum_probs=86.6
Q ss_pred CCeEEEEeecccCCCCchhhHHHHHHhhhCCCe-eEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHH
Q 016756 155 RGVVIRFVIGRSANRGDSLDRKIDAENRETKDF-LILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 233 (383)
Q Consensus 155 ~gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DI-l~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~ 233 (383)
..+.+.+|=+.+. +..+..|.+-.+.++-+ ++-........+.+.= ..-+++....+|++..|.|+.+.++.
T Consensus 33 ~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~a----rN~g~~~A~~d~l~flD~D~i~~~~~ 105 (281)
T PF10111_consen 33 PDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKA----RNIGAKYARGDYLIFLDADCIPSPDF 105 (281)
T ss_pred CCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHH----HHHHHHHcCCCEEEEEcCCeeeCHHH
Confidence 3566666655443 23445677766776665 3211111112233322 22333345789999999999999999
Q ss_pred HHHHhh---ccCC-CCceEEEE-eecCCccc-----cCCCcccccCccccCC--CCCC-CccccCCeEEECHHHHHHHHH
Q 016756 234 LIGLLD---RSRG-QESAYIGC-MKSGDVVT-----EEGRQWYEPEWWKFGD--GKSY-FRHAAGSIFVLSRNLAQYINI 300 (383)
Q Consensus 234 L~~~L~---~~~~-~~~~YiG~-~~~g~pir-----~~~~K~y~p~~~~f~~--~~~Y-p~y~~G~gYvlS~dla~~I~~ 300 (383)
+...+. .... ...++++. ........ .....|.....-.+.. .+.+ .....|++.+++++.-..|-.
T Consensus 106 i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGG 185 (281)
T PF10111_consen 106 IEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGG 185 (281)
T ss_pred HHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCC
Confidence 999888 3322 22333332 21111111 1000111100000111 1111 123356899999999888865
Q ss_pred hcccCCCCCCchHHHHHHhhhCCCe
Q 016756 301 NSASLKTYAHDDTSVGSWMMGVRAT 325 (383)
Q Consensus 301 ~~~~l~~~~~EDV~vG~wl~~l~v~ 325 (383)
.-.....+..||.=++.=+...+..
T Consensus 186 fDE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 186 FDERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CCccccCCCcchHHHHHHHHHcCCc
Confidence 5555566789999998766655543
No 52
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=45.15 E-value=2.8e+02 Score=26.48 Aligned_cols=119 Identities=11% Similarity=0.054 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHhhc-CCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCC---cc-------cc
Q 016756 199 ELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGR---QW-------YE 267 (383)
Q Consensus 199 nLt~Kt~~~f~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~---K~-------y~ 267 (383)
|.-.|+-..-...... .+.+|++-.|.|+.+.++-|...+......++ +|.+....-..+..+ ++ +.
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 4344555444433332 56799999999999999999998887643333 243331111111111 10 00
Q ss_pred c------CccccCCCCCCCccccCCeEEECHHHHHHHHHhc------ccCCCCCCchHHHHHHhhhCCC
Q 016756 268 P------EWWKFGDGKSYFRHAAGSIFVLSRNLAQYININS------ASLKTYAHDDTSVGSWMMGVRA 324 (383)
Q Consensus 268 p------~~~~f~~~~~Yp~y~~G~gYvlS~dla~~I~~~~------~~l~~~~~EDV~vG~wl~~l~v 324 (383)
+ .+|. ..-.++.|...++.++....+..-. ..-...-.||..+|..+...|-
T Consensus 155 ~~~~~~~~~~~-----~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ 218 (254)
T cd04191 155 PVFGRGLAAWQ-----GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGW 218 (254)
T ss_pred HHHHHHHHHhc-----CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCC
Confidence 0 1111 0113567999999999887753211 1112346899999998776553
No 53
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=39.05 E-value=4.4e+02 Score=29.32 Aligned_cols=124 Identities=16% Similarity=0.060 Sum_probs=70.1
Q ss_pred ChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeec-----C-Cccc-cCC---------
Q 016756 199 ELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKS-----G-DVVT-EEG--------- 262 (383)
Q Consensus 199 nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~-----g-~pir-~~~--------- 262 (383)
|...|.-. +..+.++.+.+|++-.|.|..+..+.|.+.+......+++ |.+.. + .++. +-.
T Consensus 212 n~~~KAgn-LN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v--~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~ 288 (713)
T TIGR03030 212 NVHAKAGN-INNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKL--FLVQTPHFFVSPDPIERNLGTFRRMPNEN 288 (713)
T ss_pred CCCCChHH-HHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCE--EEEeCCeeccCCCHHhhhhHHHHHhhhHH
Confidence 33456443 5666667788999999999999999888887765333433 22211 1 1110 000
Q ss_pred CcccccCccccCCCCCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCCC--eEeeCC
Q 016756 263 RQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA--TYKDDN 330 (383)
Q Consensus 263 ~K~y~p~~~~f~~~~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~v--~~id~~ 330 (383)
..+|.... .+....-..++.|.+.++.+++.+.+---. ...-.||..+|.-+...|- ...++.
T Consensus 289 ~~f~~~i~--~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~~~~ 353 (713)
T TIGR03030 289 ELFYGLIQ--DGNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYLDRP 353 (713)
T ss_pred HHHHHHHH--HHHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEeccc
Confidence 00111000 000000124567999999999998774211 1224799999987766554 344444
No 54
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=37.04 E-value=3.6e+02 Score=30.09 Aligned_cols=196 Identities=11% Similarity=0.064 Sum_probs=99.8
Q ss_pred ceEEEEEEEcCCCCHHH-HHHHHHHhccCCccchhhc-cCCeEEEEeecccCCCCchh--hHHHHHHhhhCC---CeeEc
Q 016756 118 KLLAVIGVYTGFGSHLN-RNVYRGSWMPKGDALKKLE-ERGVVIRFVIGRSANRGDSL--DRKIDAENRETK---DFLIL 190 (383)
Q Consensus 118 k~~llI~V~Sa~~~~~R-R~aIR~TW~~~~~~l~~l~-~~gv~vrFViG~s~~~~~~~--~~~I~~E~~~~~---DIl~l 190 (383)
...+.|.|.+--...++ +..|+.+..+-.. .. ...+.+ ||+..+.++.-.. .+++.+=.++|+ .|...
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr 197 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYR 197 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 45566666666555443 4567776653211 00 124555 8887654422111 011222223332 34422
Q ss_pred CCCcccCCChhHHHHHHHHHHhhc-CCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCc-----
Q 016756 191 EGHEEAQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQ----- 264 (383)
Q Consensus 191 ~d~~DsY~nLt~Kt~~~f~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K----- 264 (383)
.--.|.-.|.-..-.+.... .+++|++-.|-|+.+..+.|.+++.....+++ +|-+...+...+..+-
T Consensus 198 ----~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~q 271 (691)
T PRK05454 198 ----RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARLQ 271 (691)
T ss_pred ----ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHHH
Confidence 12234445666555555443 56799999999999999999998876533343 3555432222221110
Q ss_pred -----cccc------CccccCCCCCCCccccCCeEEECHHHHHHHHH------hcccCCCCCCchHHHHHHhhhCC--Ce
Q 016756 265 -----WYEP------EWWKFGDGKSYFRHAAGSIFVLSRNLAQYINI------NSASLKTYAHDDTSVGSWMMGVR--AT 325 (383)
Q Consensus 265 -----~y~p------~~~~f~~~~~Yp~y~~G~gYvlS~dla~~I~~------~~~~l~~~~~EDV~vG~wl~~l~--v~ 325 (383)
.|.+ .||..+.+ ...|-..++.++....+.. ..+.-...-.||...|..+...| |.
T Consensus 272 qf~~~~y~~~~~~G~~~w~~~~g-----~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~ 346 (691)
T PRK05454 272 QFATRVYGPLFAAGLAWWQGGEG-----NYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVW 346 (691)
T ss_pred HHHHHHHHHHHHhhhhhhccCcc-----ccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEE
Confidence 1111 11211111 1247777888887665431 11111244678999998877655 44
Q ss_pred EeeC
Q 016756 326 YKDD 329 (383)
Q Consensus 326 ~id~ 329 (383)
.+++
T Consensus 347 ~~pd 350 (691)
T PRK05454 347 LAPD 350 (691)
T ss_pred EcCc
Confidence 5555
No 55
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=32.70 E-value=3.6e+02 Score=23.97 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=50.8
Q ss_pred CeEEEEeecccCCCCchhhHHHHHHhhhCCCeeEcCCCcccCCChhHHHHHHHHHHhhcCCceEEEEEcCCceecHHHHH
Q 016756 156 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 235 (383)
Q Consensus 156 gv~vrFViG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~DsY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfVn~~~L~ 235 (383)
...+..|-+.|.+ .....+++..++++..+++-.... |. .|. ..+..+.+....+|++-.|+|..+.++.+.
T Consensus 30 ~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~---n~-G~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPK---NR-GKG-GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEccc---CC-CcH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 4566666555533 233445555555665422101222 21 122 233333344456999999999999999998
Q ss_pred HHhhc-cCCCCceEEEEe
Q 016756 236 GLLDR-SRGQESAYIGCM 252 (383)
Q Consensus 236 ~~L~~-~~~~~~~YiG~~ 252 (383)
.+++. ......+.+|..
T Consensus 102 ~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 102 KLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHhccCCcEEEEEe
Confidence 88886 344456677754
No 56
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=26.96 E-value=2e+02 Score=28.71 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=27.5
Q ss_pred CCCCceEEEEEEEcCCCCHHHHHHHHHHhccCCccchhhccCCeEEEEeeccc
Q 016756 114 SSGKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRS 166 (383)
Q Consensus 114 ~~~~k~~llI~V~Sa~~~~~RR~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s 166 (383)
..+++..+.|||.|.... +-+.+..|=++--..+..-+.+.+.|+-.++.+
T Consensus 47 ~~~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~ 97 (297)
T PF04666_consen 47 KPRTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPEERKDIVIVVLLADT 97 (297)
T ss_pred CCCCCCeEEEEecccccC--CCchHHHHHHHHHHhCCHHHhcCeEEEEEecCC
Confidence 334555599999997543 334555555543322222234456665555554
No 57
>PLN03181 glycosyltransferase; Provisional
Probab=26.79 E-value=3.3e+02 Score=28.77 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=28.9
Q ss_pred cCCChhHHHHHHHHHHhhcCCceEEEEEcCCcee
Q 016756 196 AQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDL 229 (383)
Q Consensus 196 sY~nLt~Kt~~~f~wa~~~~~a~fvlKvDDDvfV 229 (383)
.+..-..|...+-.-+.++|+++|+.-+|.|+++
T Consensus 178 ~~p~~WaKipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 178 KMNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred cCchhhhHHHHHHHHHHHCCCceEEEEecCCcee
Confidence 5666778888877777778999999999999988
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=26.76 E-value=3.2e+02 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=24.4
Q ss_pred HHHhhcCCceEEEEEcCCceecHHHHHHHhhc
Q 016756 209 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDR 240 (383)
Q Consensus 209 ~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~ 240 (383)
..+.+..+.+|++-+|+|..+.++.+...+..
T Consensus 70 ~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 70 NAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 33444447899999999999999888876443
No 59
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=25.71 E-value=4.4e+02 Score=22.83 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhhc-CCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEeecCCccccCCCcccc----cCcc---c
Q 016756 201 PKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE----PEWW---K 272 (383)
Q Consensus 201 t~Kt~~~f~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~~g~pir~~~~K~y~----p~~~---~ 272 (383)
..-...+++++.+. .+.+|++-+|.|+.+.++.|..++........+..|...... +...|.- -.+. .
T Consensus 65 ~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~ 140 (183)
T cd06438 65 GYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN----PDDSWITRLYAFAFLVFNR 140 (183)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC----CccCHHHHHHHHHHHHHHH
Confidence 33334455555432 568999999999999998888888776555566666543211 1112210 0000 0
Q ss_pred cCC-C---CCCCccccCCeEEECHHHHHH
Q 016756 273 FGD-G---KSYFRHAAGSIFVLSRNLAQY 297 (383)
Q Consensus 273 f~~-~---~~Yp~y~~G~gYvlS~dla~~ 297 (383)
+.. + -.-+.++.|.++++++++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 141 LRPLGRSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHHHHHHcCCCeeecCchhhhHHHHHHh
Confidence 000 0 012345689999999999887
No 60
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=25.69 E-value=5.3e+02 Score=23.68 Aligned_cols=92 Identities=11% Similarity=0.028 Sum_probs=50.8
Q ss_pred HHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccC-CCCceEEEEeecCCccccCCCccc---ccCcc----ccCCCCC
Q 016756 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKSGDVVTEEGRQWY---EPEWW----KFGDGKS 278 (383)
Q Consensus 207 ~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~-~~~~~YiG~~~~g~pir~~~~K~y---~p~~~----~f~~~~~ 278 (383)
.+..+.+..+.+|++..|+|..++++.|..++.... ....+.+|......... .+..|. .+... ....+.
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~- 161 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGV-HGWDLRRKLTSRGANVLAQTLLWP- 161 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCc-CCccHHHHHHHHHHHHHHHHHhCC-
Confidence 334444445689999999999999998888877653 34456656432110000 000010 00000 000011
Q ss_pred CCccccCCeEEECHHHHHHHHH
Q 016756 279 YFRHAAGSIFVLSRNLAQYINI 300 (383)
Q Consensus 279 Yp~y~~G~gYvlS~dla~~I~~ 300 (383)
.-...+|++.++++++++.+..
T Consensus 162 ~~~d~~g~~~~~rr~~~~~i~~ 183 (243)
T PLN02726 162 GVSDLTGSFRLYKRSALEDLVS 183 (243)
T ss_pred CCCcCCCcccceeHHHHHHHHh
Confidence 1123578888999999999864
No 61
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=24.39 E-value=3.6e+02 Score=28.36 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=53.6
Q ss_pred HHHHHHhccCCccchhhccCCeEEEEeecccCCC-----Cch-hhHHHH---HHhhhCCCeeEcC--CCcccCCChhHHH
Q 016756 136 NVYRGSWMPKGDALKKLEERGVVIRFVIGRSANR-----GDS-LDRKID---AENRETKDFLILE--GHEEAQEELPKKA 204 (383)
Q Consensus 136 ~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~-----~~~-~~~~I~---~E~~~~~DIl~l~--d~~DsY~nLt~Kt 204 (383)
+.-|+.|....+.........-+|+-|.|..+.+ ++. +++.++ +=++.||=-+..+ .+.+.......|.
T Consensus 106 d~~R~~wl~~~p~~~~~~~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaKl 185 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFVNGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAKL 185 (429)
T ss_pred HHHHHHHHHhCCCCCCccCCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhHH
Confidence 4445667665542211111224667777766542 222 233222 1133454223231 1233445667899
Q ss_pred HHHHHHHhhcCCceEEEEEcCCcee
Q 016756 205 KFFFSTAVQIWDAEFYVKVDDNIDL 229 (383)
Q Consensus 205 ~~~f~wa~~~~~a~fvlKvDDDvfV 229 (383)
-+.-+.+.++|+++|+.=+|.|+++
T Consensus 186 paLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 186 PLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHCCCceEEEEecCCcee
Confidence 8888888888999999999999988
No 62
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=23.54 E-value=4.6e+02 Score=25.85 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=52.6
Q ss_pred CCeEEEEeecccCCCCchhhHHHHHHh----------hhCCCeeEcC-CCcccC------------CChhHHHHHHH-HH
Q 016756 155 RGVVIRFVIGRSANRGDSLDRKIDAEN----------RETKDFLILE-GHEEAQ------------EELPKKAKFFF-ST 210 (383)
Q Consensus 155 ~gv~vrFViG~s~~~~~~~~~~I~~E~----------~~~~DIl~l~-d~~DsY------------~nLt~Kt~~~f-~w 210 (383)
.-|.+-|+++.+.. ++...+.|+++. ..|+.|.++. ||.+.- ...-.+.++-- .|
T Consensus 55 ~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~ 133 (269)
T PF03452_consen 55 ELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNF 133 (269)
T ss_pred hheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHH
Confidence 34788899999863 234444555433 3456666542 443311 11122222211 12
Q ss_pred Hhhc---CCceEEEEEcCCceecHHHHHHHhhccC
Q 016756 211 AVQI---WDAEFYVKVDDNIDLDLEGLIGLLDRSR 242 (383)
Q Consensus 211 a~~~---~~a~fvlKvDDDvfVn~~~L~~~L~~~~ 242 (383)
+... +..+|++-.|-|+.-.++.|++.|-.+.
T Consensus 134 LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 2222 6899999999999999999999998864
No 63
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=23.24 E-value=2.2e+02 Score=29.00 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=72.5
Q ss_pred hhhhhhcCccccccccCCCCCCCceEEEEEEEcCCCCHHHHHHHHHHhccCCccchhhccCCeEEEEeecccCCCCchhh
Q 016756 95 LTLAKSQGYLKNQLLQSGSSSGKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLD 174 (383)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~k~~llI~V~Sa~~~~~RR~aIR~TW~~~~~~l~~l~~~gv~vrFViG~s~~~~~~~~ 174 (383)
..+....||..-....-+..++=.+.-+|=|+-. ..--.+--++|.+.- ..|| +|-..- +|...
T Consensus 65 i~~~~h~gyf~~d~k~~d~~~pl~~~~~iRvKnE---~~tl~~si~S~Lpai-------~~gV-----I~yNdc-~D~t~ 128 (347)
T PF06306_consen 65 IIAEGHKGYFDYDEKSKDPKSPLNPWAFIRVKNE---AMTLAESIESILPAI-------DEGV-----IGYNDC-TDGTE 128 (347)
T ss_pred HHcCCCCCccccChhhcCCCCCCCcceEEEEcch---hhhHHHHHHHHHHHH-------hccE-----EEeecC-CCCHH
Confidence 3333445665432221112222345666655533 222233345666643 2342 343221 23334
Q ss_pred HHHHHHhhhCCCeeEcC----CCcccCCChhHHHHHHHHHHhhc-CCceEEEEEcCCceecHHHHHHHhhc
Q 016756 175 RKIDAENRETKDFLILE----GHEEAQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDR 240 (383)
Q Consensus 175 ~~I~~E~~~~~DIl~l~----d~~DsY~nLt~Kt~~~f~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~ 240 (383)
+-|.+=.++|-+++-+. ....+-.....+...++.|+... ++.+|++|+|.|-.-....|....-.
T Consensus 129 Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~ 199 (347)
T PF06306_consen 129 EIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYI 199 (347)
T ss_pred HHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhee
Confidence 45666667888887541 01111122344677788999888 88999999999999999999776554
No 64
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=22.74 E-value=1e+02 Score=29.61 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=29.3
Q ss_pred CceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEee
Q 016756 216 DAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMK 253 (383)
Q Consensus 216 ~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~~ 253 (383)
..+-|+-+|||+.++.+.|....+..+..+.-.+|..-
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~ 112 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPP 112 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-E
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCcc
Confidence 46789999999999999998887776666777888653
No 65
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=22.42 E-value=5.6e+02 Score=22.82 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCCCceEEEEe
Q 016756 209 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCM 252 (383)
Q Consensus 209 ~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~YiG~~ 252 (383)
..+.+..+.+|++.+|+|..+.++.|...+......+...+|+-
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 34444457799999999999999888776665544444455653
No 66
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=22.38 E-value=1.2e+02 Score=19.92 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.1
Q ss_pred CchhHHHHHHHHHHHHHHHhcc
Q 016756 23 TSKPSVVLAFFSCLAWLYVAGR 44 (383)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~ 44 (383)
+--|+.++.+|+|-+.+.|-||
T Consensus 5 ~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 5 SLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHhccceeEEEec
Confidence 3458999999999999999888
No 67
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=22.23 E-value=2.1e+02 Score=26.60 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCceEEEEEcCCceecHHHHHHHhhccCCCCce--EEEEeecCCccccCCCcccccCcc------c-cCCCCCCCccccC
Q 016756 215 WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESA--YIGCMKSGDVVTEEGRQWYEPEWW------K-FGDGKSYFRHAAG 285 (383)
Q Consensus 215 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~~--YiG~~~~g~pir~~~~K~y~p~~~------~-f~~~~~Yp~y~~G 285 (383)
.+.+|++.+|.|+.+..+.|...+..+...+++ ..|......+....-.+...-+|+ + +-..-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 478999999999999999988888766434443 223221100000000000000110 0 0001134567789
Q ss_pred CeEEECHHHHHHHHHhccc----------C-------CCCCCchHHHHHHhhhCC
Q 016756 286 SIFVLSRNLAQYININSAS----------L-------KTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 286 ~gYvlS~dla~~I~~~~~~----------l-------~~~~~EDV~vG~wl~~l~ 323 (383)
+++++.+++.+.+...... + .....||..++..+...+
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G 206 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAG 206 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccC
Confidence 9999999987765322111 0 122479988887775544
No 68
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=20.95 E-value=99 Score=23.61 Aligned_cols=16 Identities=31% Similarity=0.092 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 016756 27 SVVLAFFSCLAWLYVA 42 (383)
Q Consensus 27 ~~~~~~~~~~~~~~~~ 42 (383)
++++|++|+.+|.+++
T Consensus 42 ~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 42 VVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3578999999998876
No 69
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=20.32 E-value=6.6e+02 Score=22.87 Aligned_cols=114 Identities=10% Similarity=0.015 Sum_probs=62.7
Q ss_pred HHHHHhhcCCceEEEEEcCCceecHHHHHHHhhccCCC-Cce-EEEEe-ecCCccccCCCcccccCccc-cC------CC
Q 016756 207 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQ-ESA-YIGCM-KSGDVVTEEGRQWYEPEWWK-FG------DG 276 (383)
Q Consensus 207 ~f~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~-~~~-YiG~~-~~g~pir~~~~K~y~p~~~~-f~------~~ 276 (383)
....+.+....+|++..|+|+.+.++.|.+.++..... +.+ ++|.. .....-.....+++..+++. +. ..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666677999999999999999998888876432 332 22221 11000000000111000000 00 00
Q ss_pred CCCCccccCCeEEECHHHHHHHHHhcccCCCCCCchHHHHHHhhhCC
Q 016756 277 KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 323 (383)
Q Consensus 277 ~~Yp~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~wl~~l~ 323 (383)
...+..+.|++.++++++.+.+-.-.. ....||..++.=+...|
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G 198 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAG 198 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCC
Confidence 123334678889999999988743222 23469999987655444
Done!