BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016757
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 162/311 (52%), Gaps = 22/311 (7%)
Query: 82 CVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTST 141
V +G ++ +V AV A P S R ++ I +G+Y E V VPK K NI F G G TST
Sbjct: 10 VVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTST 69
Query: 142 AIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQS 201
I + + + TF S +V + F+A++++F N A G QAVA+R+ D S
Sbjct: 70 IITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDLS 124
Query: 202 AFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSK 261
AF+ C QD+L+ R +F +C I G++DFIFGNA ++C + + PGS
Sbjct: 125 AFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDI----HARRPGSG 180
Query: 262 AISGAVTAHGRASKDENSGFAFVNCTVGGTGRI---------WLGRAWRPFSRVVFLFAS 312
VTA GR ++N+G +G T + +LGR W+ +SR V + +S
Sbjct: 181 Q-KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS 239
Query: 313 MTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQ---RLNDTQASLFLNT 369
+T++I P GW ++ T++YGEY TGAG+ + R + + T+A F
Sbjct: 240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPG 299
Query: 370 SFIDGDQWLQS 380
SFI G WL++
Sbjct: 300 SFIAGGSWLKA 310
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 82 CVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTST 141
V ++G ++ ++ AV A P+ S R ++ + G Y E V V K N+ G G +T
Sbjct: 6 VVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYAT 65
Query: 142 AIAWNDTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSPGDVGAQAVAIRISGDQS 201
I + + TF S ++ F+ +++ N A G QAVA+R+ D S
Sbjct: 66 TITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTA-----GPAKDQAVALRVGADMS 120
Query: 202 AFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMANPVAPGSK 261
C QDTL+ R +++D ++ G++DFIFGNA ++ CQL++ PG K
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVAR----KPG-K 175
Query: 262 AISGAVTAHGRASKDENSGFAFVNCTVGGTGRI---------WLGRAWRPFSRVVFLFAS 312
VTA GR ++ +G + C + + + +LGR W+ +SR V + +
Sbjct: 176 YQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESY 235
Query: 313 MTDIIAPEGWNDFNDPTRDQTVFYGEY--NCTGAGSDMTMRAPYVQRLND-TQASLFLNT 369
+ +I P GW +++ +T++YGE+ N GAG+ ++ P + D +A F
Sbjct: 236 LGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVA 295
Query: 370 SFIDGDQWLQS 380
I G WL+S
Sbjct: 296 KLIQGGSWLRS 306
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 55/327 (16%)
Query: 91 FTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWN---- 146
F ++ A+ + P S ++LI +G+Y E++T+ T+ N+ +G+ IA
Sbjct: 18 FKTIADAIASAPAGSTPF-VILIKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAG 74
Query: 147 --DTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSP-----------GDVGAQAVA 193
+ S GT S ++ + A +F A++++ N P+ D A A+
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 194 IRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMA 253
+ SGD++ F G QDTL+ GR +F DC I G++DFIFG+ + + NC L+S
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194
Query: 254 NPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTG------RIWLGRAWRP----- 302
S +SG +TA + ++ G N V LGR W P
Sbjct: 195 RADVK-SGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFS 252
Query: 303 ---------FSRVVFLFASMTDIIAPEGWNDFNDPTRD-QTVFYG-------EYNCTGAG 345
+ VFL SM + I GW+ + ++ T+++ EY GAG
Sbjct: 253 DGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAG 310
Query: 346 SDMTMRAPYVQRLNDTQASLFLNTSFI 372
+ ++ ++L D QA+ + + +
Sbjct: 311 ATVSKDR---RQLTDAQAAEYTQSKVL 334
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 55/327 (16%)
Query: 91 FTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWN---- 146
F ++ A+ + P S ++LI +G+Y E++T+ T+ N+ +G+ IA
Sbjct: 18 FKTIADAIASAPAGSTPF-VILIKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAG 74
Query: 147 --DTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSP-----------GDVGAQAVA 193
+ S GT S ++ + A +F A++++ N P+ D A A+
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 194 IRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMA 253
+ SGD++ F G QDTL+ GR +F DC I G++DFIFG+ + + NC L+S
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194
Query: 254 NPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTG------RIWLGRAWRP----- 302
S +SG +TA + ++ G N V LGR W P
Sbjct: 195 RADVK-SGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFS 252
Query: 303 ---------FSRVVFLFASMTDIIAPEGWNDFNDPTRD-QTVFYG-------EYNCTGAG 345
+ VFL SM + I GW+ + ++ T+++ EY GAG
Sbjct: 253 DGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAG 310
Query: 346 SDMTMRAPYVQRLNDTQASLFLNTSFI 372
+ ++ ++L D QA+ + + +
Sbjct: 311 AAVSKDR---RQLTDAQAAEYTQSKVL 334
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 142/327 (43%), Gaps = 55/327 (16%)
Query: 91 FTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWN---- 146
F ++ A+ + P S ++LI +G+Y E++T+ T+ N+ +G+ IA
Sbjct: 18 FKTIADAIASAPAGSTPF-VILIKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAG 74
Query: 147 --DTAKSANGTFYSGSVQVFASNFMAKNVSFMNVAPIPSP-----------GDVGAQAVA 193
+ S GT S ++ + A +F A++++ N P+ D A A+
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 194 IRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCHIQGSIDFIFGNARSFYENCQLISMA 253
+ SGD++ F G Q TL+ GR +F DC I G++DFIFG+ + + NC L+S
Sbjct: 135 VTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194
Query: 254 NPVAPGSKAISGAVTAHGRASKDENSGFAFVNCTVGGTG------RIWLGRAWRP----- 302
S +SG +TA + ++ G N V LGR W P
Sbjct: 195 RADVK-SGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFS 252
Query: 303 ---------FSRVVFLFASMTDIIAPEGWNDFNDPTRD-QTVFYG-------EYNCTGAG 345
+ VFL SM + I GW+ + ++ T+++ EY GAG
Sbjct: 253 DGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAG 310
Query: 346 SDMTMRAPYVQRLNDTQASLFLNTSFI 372
+ ++ ++L D QA+ + + +
Sbjct: 311 ATVSKDR---RQLTDAQAAEYTQSKVL 334
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 21/180 (11%)
Query: 90 NFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTA 149
F+S+ +A+ + P I+ + +G+Y E++ V ++ ++T +G+ T I N A
Sbjct: 43 EFSSINAALKSAPKDDTPF-IIFLKNGVYTERLEVARS--HVTLKGENRDGTVIGANTAA 99
Query: 150 KSAN------GTFYSGSVQVFASNFMAKNVSFMNVAPIPS--------PGDVG-AQAVAI 194
N GT S +V V A NF A+N++ N P+ P + QAVA+
Sbjct: 100 GMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVAL 159
Query: 195 RIS--GDQSAFFGCGFFGAQDTLHDDRG-RHYFKDCHIQGSIDFIFGNARSFYENCQLIS 251
++ D++ F G QDTL+ G R YF DC I G +DFIFG+ + ++NC +++
Sbjct: 160 LLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNIVA 219
>pdb|3PRY|A Chain A, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|B Chain B, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|C Chain C, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
Length = 268
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 339 YNCTGAGSDMTMRAPYVQRLNDTQASLF 366
Y+ + +G +MT + YV R+ +TQ S++
Sbjct: 175 YHTSQSGDEMTSLSEYVSRMKETQKSIY 202
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 209 FGAQDTLHDDRGRHYFKDCHIQGSIDFIFGN 239
GAQ + Y DC G+IDF FGN
Sbjct: 238 IGAQMKFDSAGNKVYVADCKTSGTIDFQFGN 268
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 18/60 (30%)
Query: 209 FGAQDTLHDDRGRHYFKDCHIQGSIDFIF-GNAR-----------------SFYENCQLI 250
F Q+T + Y DC++ GS+DF F NA+ Y+ CQL+
Sbjct: 236 FNGQETYDANGNLFYLVDCNLSGSVDFAFDKNAKISVPASEFTAPLYTEDGQVYDQCQLL 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,118,536
Number of Sequences: 62578
Number of extensions: 450054
Number of successful extensions: 1198
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1179
Number of HSP's gapped (non-prelim): 10
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)