BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016758
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 133/227 (58%), Gaps = 2/227 (0%)
Query: 85 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRH 144
+D+ H + SLE+LY G + KL+L++ ++ G G+K R
Sbjct: 12 KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 145 LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 204
+GP MIQ+ Q C+ C GTG+ I+ KDRC C G+KV E+K+LEV VE GM++GQ+I F
Sbjct: 72 MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 205 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQ 264
GEAD+APD + GD+VF++ ++ H FKR GDDL E + L A+ G +F + H+ G
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 265 LLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES 311
L + PGEV+ P K I +GMP+ + G L I FT+ PE+
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGY-GNLIIKFTIKDPEN 236
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 63/239 (26%)
Query: 87 VIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLG 146
V H L+VSLE++Y+G +KK MK+S + L
Sbjct: 14 VTHDLRVSLEEIYSGCTKK--------------------------------MKISHKRLN 41
Query: 147 PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 206
P G+ + E K+L + V+KG + G KITFP
Sbjct: 42 PD-----------------------------GKSIRNEDKILTIEVKKGWKEGTKITFPK 72
Query: 207 EADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 266
E D+ + + DIVFVL+ K H FKR G D+ +SL EALCG + LDGR +
Sbjct: 73 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 132
Query: 267 IKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325
+ + +V++P + + EG+P+ + P RG L I F V FPE + +LE VLP
Sbjct: 133 VVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 189
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 63/239 (26%)
Query: 87 VIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLG 146
V H L+VSLE++Y+G +KK MK+S + L
Sbjct: 7 VTHDLRVSLEEIYSGCTKK--------------------------------MKISHKRLN 34
Query: 147 PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 206
P G+ + E K+L + V+KG + G KITFP
Sbjct: 35 PD-----------------------------GKSIRNEDKILTIEVKKGWKEGTKITFPK 65
Query: 207 EADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 266
E D+ + + DIVFVL+ K H FKR G D+ +SL EALCG + LDGR +
Sbjct: 66 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 125
Query: 267 IKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325
+ + +V++P + + EG+P+ + P RG L I F V FPE + +LE VLP
Sbjct: 126 VVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 182
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 63/239 (26%)
Query: 87 VIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLG 146
V H L+VSLE++Y+G +KK MK+S + L
Sbjct: 5 VTHDLRVSLEEIYSGCTKK--------------------------------MKISHKRLN 32
Query: 147 PSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPG 206
P G+ + E K+L + V+KG + G KITFP
Sbjct: 33 PD-----------------------------GKSIRNEDKILTIEVKKGWKEGTKITFPK 63
Query: 207 EADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLL 266
E D+ + + DIVFVL+ K H FKR G D+ +SL EALCG + LDGR +
Sbjct: 64 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 123
Query: 267 IKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325
+ + +V++P + + EG+P+ + P RG L I F V FPE + +LE VLP
Sbjct: 124 VVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 180
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 3/146 (2%)
Query: 180 KVIQEKKVLEVIVEKGMQNGQKITFPGEAD-EAPDTVTGDIVFVLQQKEHPKFKRKGDDL 238
KV E+ ++EV ++ G ++G K+T+ GE D E+P T GD+V ++Q K HP+F R L
Sbjct: 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHL 95
Query: 239 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRG 298
+ T+ L AL GF +T LD R L I + E+V P K + +EG P+ +P +G
Sbjct: 96 IXKVTIPLVRALTGFTCPVTTLDNRNLQIPIK--EIVNPKTRKIVPNEGXPIKNQPGQKG 153
Query: 299 KLYIHFTVDFPESLSPDQCKMLETVL 324
L + F + FP+SL+P+Q K+++ L
Sbjct: 154 DLILEFDICFPKSLTPEQKKLIKEAL 179
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 177 KGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 235
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 236 DDLFVEHTLSLTEALCGFQFVITHLDGRQL-LIKSQPGEVVKPDQFKAINDEGMPMYQRP 294
DDL LS E+L GF I +DGR L L + QP V+P Q +GMP + P
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNP 143
Query: 295 FMRGKLYIHFTVDFPESLSPDQCKMLE 321
RG L + + VD+P SL+ Q + ++
Sbjct: 144 SQRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 177 KGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 235
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 236 DDLFVEHTLSLTEALCGFQFVITHLDGRQL-LIKSQPGEVVKPDQFKAINDEGMPMYQRP 294
DDL LS E+L GF I +DGR L L + QP V+P Q +GMP + P
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNP 143
Query: 295 FMRGKLYIHFTVDFPESLSPDQCKMLE 321
RG L + + VD+P SL+ Q + ++
Sbjct: 144 SQRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 71.6 bits (174), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 231 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 290
FKR GDDL E + L A+ G +F + H+ G L + PGEV+ P K I +GMP+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 291 YQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQL-TDMELDEC 340
+ G L I FT+ FPE+ S + K LE +LPPR + +DEC
Sbjct: 62 -PKYGGYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDEC 113
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 8 KNASQDDLKKFKELAQAYEVLSDPEKREIYDQYGEDALK 46
KN +KFKE+A+AY+VLSDP KREI+D+YGE+ LK
Sbjct: 35 KNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 30/33 (90%)
Query: 14 DLKKFKELAQAYEVLSDPEKREIYDQYGEDALK 46
D +KFKE+++A+E+L+DP+KREIYDQYG +A +
Sbjct: 44 DTEKFKEISEAFEILNDPQKREIYDQYGLEAAR 76
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 16 KKFKELAQAYEVLSDPEKREIYDQYGEDAL 45
KKFKE+A+AYEVLSD KREIYD+YG + L
Sbjct: 44 KKFKEVAEAYEVLSDKHKREIYDRYGREGL 73
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 1 MRFSESRKNASQDDLKKFKELAQAYEVLSDPEKREIYDQYGEDALKE 47
M++ R ++ KFKE+ +AYEVL+D +KR YDQYG A ++
Sbjct: 29 MKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 1 MRFSESRKNASQDDLKKFKELAQAYEVLSDPEKREIYDQYGEDALKE 47
M++ R ++ KFKE+ +AYEVL+D +KR YDQYG A ++
Sbjct: 29 MKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 1 MRFSESRKNASQDDLKKFKELAQAYEVLSDPEKREIYDQYGEDALKE 47
M++ R ++ KFKE+ +AYEVL+D +KR YDQYG A ++
Sbjct: 29 MKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 25/26 (96%)
Query: 16 KKFKELAQAYEVLSDPEKREIYDQYG 41
++FK++A+AYEVLSD +KR+IYD+YG
Sbjct: 51 RRFKQVAEAYEVLSDAKKRDIYDRYG 76
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 27/31 (87%)
Query: 13 DDLKKFKELAQAYEVLSDPEKREIYDQYGED 43
D ++FK+++QAYEVLSD +KR+IYDQ GE+
Sbjct: 43 DGAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 24/26 (92%)
Query: 17 KFKELAQAYEVLSDPEKREIYDQYGE 42
KFK+++QAYEVLSD +KRE+YD+ GE
Sbjct: 45 KFKQISQAYEVLSDAKKRELYDKGGE 70
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 8 KNASQDDLKKFKELAQAYEVLSDPEKREIYDQYGEDAL 45
KN S D KF+E+A+AYE LSD +R+ YD G A
Sbjct: 39 KNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF 76
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 16 KKFKELAQAYEVLSDPEKREIYDQYGEDALK 46
KKFK +++AYEVLSD +KR +YD+ G D+ +
Sbjct: 51 KKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 8 KNASQDDLKKFKELAQAYEVLSDPEKREIYDQYG 41
KN + + FK + AY VLS+PEKR+ YDQ+G
Sbjct: 39 KNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFG 72
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
Query: 9 NASQDDLK---KFKELAQAYEVLSDPEKREIYDQYG 41
+ ++DD K KF +LA+AYEVLSD KR+ YD YG
Sbjct: 38 DTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 23/61 (37%)
Query: 8 KNASQDDLKK-----------------------FKELAQAYEVLSDPEKREIYDQYGEDA 44
KNA+ DD+KK FKE+ A+ +L+D KR IYD+YG
Sbjct: 27 KNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG 86
Query: 45 L 45
L
Sbjct: 87 L 87
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 8 KNASQDDLKKFKELAQAYEVLSDPEKREIYDQYG 41
KN +F ++++AYE+LS+ EKR YD YG
Sbjct: 49 KNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYG 82
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 186 KVLEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVEHTL 244
K L V + G+ +GQ+I G+ + GD+ V+ HP F G +L + L
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 245 SLTEALCGFQFVITHLDGRQLLIKSQPG 272
+ EA G + + L +L+ PG
Sbjct: 241 APWEAALGAKVTVPTLK-ESILLTVPPG 267
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 13 DDLKKFKELAQAYEVLSDPEKREIYDQ 39
D KFK+LA+A+EVL D ++R YDQ
Sbjct: 65 DAEAKFKDLAEAWEVLKDEQRRAEYDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 13 DDLKKFKELAQAYEVLSDPEKREIYDQ 39
D +FKE+A+A+EVLSD ++R YDQ
Sbjct: 42 DAEARFKEVAEAWEVLSDEQRRAEYDQ 68
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 18 FKELAQAYEVLSDPEKREIYDQYGEDALKE 47
F ++ +AYEVL D + R+ YD+YGE L++
Sbjct: 45 FLKINRAYEVLKDEDLRKKYDKYGEKGLED 74
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 18 FKELAQAYEVLSDPEKREIYDQYGEDALKE 47
F ++ +AYEVL D + R+ YD+YGE L++
Sbjct: 64 FLKINRAYEVLKDEDLRKKYDKYGEKGLED 93
>pdb|1Y9I|A Chain A, Crystal Structure Of Low Temperature Requirement C Protein
From Listeria Monocytogenes
pdb|1Y9I|B Chain B, Crystal Structure Of Low Temperature Requirement C Protein
From Listeria Monocytogenes
pdb|1Y9I|C Chain C, Crystal Structure Of Low Temperature Requirement C Protein
From Listeria Monocytogenes
pdb|1Y9I|D Chain D, Crystal Structure Of Low Temperature Requirement C Protein
From Listeria Monocytogenes
Length = 178
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 216 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVV 275
++V LQQK HP + VEH L E L G QL + ++ GE+V
Sbjct: 28 IAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAV------LTGIQLDVXAEKGELV 81
Query: 276 KPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 318
+P Q DEG+ + ++ ++ F D+ K
Sbjct: 82 QPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVK 124
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 294 PFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQ--LTDMELDECEETTLHDVNI 350
PF R + + + FP +SPD C ++ L P+ S + L ++ LD +T DV +
Sbjct: 238 PFERDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAEDVPL 296
>pdb|3MDZ|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Vii [isoform
1], Ca7
Length = 281
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 197 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 240
N +K + GEA APD + VF+ EHP R D L++
Sbjct: 144 WNAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYM 187
>pdb|3ML5|A Chain A, Crystal Structure Of The C183sC217S MUTANT OF HUMAN CA VII
IN COMPLEX With Acetazolamide
Length = 269
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 197 QNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFV 240
N +K + GEA APD + VF+ EHP R D L++
Sbjct: 130 WNAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYM 173
>pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
Length = 515
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 138 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 171
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
>pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
Length = 509
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 138 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 171
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
>pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
Rna
pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
Length = 517
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 138 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 171
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 392 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 424
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,433,280
Number of Sequences: 62578
Number of extensions: 337438
Number of successful extensions: 920
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 47
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)