Query 016758
Match_columns 383
No_of_seqs 353 out of 2468
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00037 DnaJ_C chaperone prot 100.0 9.9E-92 2.1E-96 704.4 35.6 367 2-383 32-421 (421)
2 COG0484 DnaJ DnaJ-class molecu 100.0 1.1E-84 2.3E-89 632.5 32.2 315 2-327 8-351 (371)
3 PRK14296 chaperone protein Dna 100.0 5.5E-78 1.2E-82 599.0 33.3 314 2-326 8-361 (372)
4 KOG0712 Molecular chaperone (D 100.0 5.5E-78 1.2E-82 578.1 24.0 310 2-324 8-337 (337)
5 PRK14288 chaperone protein Dna 100.0 3.2E-76 7E-81 586.1 31.9 312 2-326 7-345 (369)
6 PRK14298 chaperone protein Dna 100.0 4.3E-75 9.3E-80 579.2 32.2 314 2-326 9-351 (377)
7 PRK14280 chaperone protein Dna 100.0 6.5E-75 1.4E-79 578.3 32.9 314 2-325 8-352 (376)
8 PRK14276 chaperone protein Dna 100.0 5.7E-75 1.2E-79 579.5 32.4 314 2-325 8-355 (380)
9 PRK14287 chaperone protein Dna 100.0 7E-75 1.5E-79 576.8 32.7 315 2-326 8-348 (371)
10 PRK14286 chaperone protein Dna 100.0 8.1E-75 1.7E-79 576.6 32.5 315 2-326 8-357 (372)
11 PRK14278 chaperone protein Dna 100.0 1.8E-74 3.9E-79 575.2 33.8 317 2-326 7-350 (378)
12 PRK14277 chaperone protein Dna 100.0 1.6E-74 3.5E-79 577.4 32.5 317 2-326 9-365 (386)
13 PRK14297 chaperone protein Dna 100.0 4E-74 8.6E-79 573.7 32.6 318 2-327 8-359 (380)
14 PRK14282 chaperone protein Dna 100.0 2.6E-73 5.6E-78 565.8 33.3 317 2-326 8-363 (369)
15 PRK14285 chaperone protein Dna 100.0 2.7E-73 5.8E-78 564.4 31.7 314 2-328 7-355 (365)
16 PRK14281 chaperone protein Dna 100.0 8.9E-73 1.9E-77 566.4 32.5 318 2-326 7-372 (397)
17 PRK14279 chaperone protein Dna 100.0 1.5E-72 3.2E-77 563.6 32.4 310 2-326 13-378 (392)
18 PRK14284 chaperone protein Dna 100.0 1.5E-72 3.3E-77 564.0 32.1 313 2-325 5-365 (391)
19 TIGR02349 DnaJ_bact chaperone 100.0 1.8E-72 3.9E-77 557.8 32.2 317 2-326 4-353 (354)
20 PRK14301 chaperone protein Dna 100.0 8.7E-72 1.9E-76 555.0 31.3 312 2-326 8-350 (373)
21 PRK14294 chaperone protein Dna 100.0 3E-71 6.5E-76 550.5 31.4 312 2-325 8-349 (366)
22 PRK14295 chaperone protein Dna 100.0 4.7E-71 1E-75 552.3 32.7 308 2-326 13-372 (389)
23 PRK14290 chaperone protein Dna 100.0 8.9E-71 1.9E-75 546.9 32.3 318 2-328 7-358 (365)
24 PRK10767 chaperone protein Dna 100.0 1.6E-70 3.5E-75 546.6 31.8 309 2-325 8-347 (371)
25 PRK14300 chaperone protein Dna 100.0 2.2E-70 4.8E-75 545.1 32.2 313 2-325 7-351 (372)
26 PRK14293 chaperone protein Dna 100.0 2.9E-70 6.3E-75 544.8 32.5 319 2-326 7-354 (374)
27 PRK14283 chaperone protein Dna 100.0 1.5E-69 3.2E-74 540.5 31.8 310 2-325 9-355 (378)
28 PRK14291 chaperone protein Dna 100.0 2.2E-69 4.8E-74 539.6 32.5 315 2-327 7-371 (382)
29 PRK14292 chaperone protein Dna 100.0 3.1E-69 6.6E-74 537.4 33.3 315 2-325 6-347 (371)
30 PRK14289 chaperone protein Dna 100.0 8E-69 1.7E-73 536.8 32.4 318 2-326 9-364 (386)
31 PRK14299 chaperone protein Dna 100.0 3.8E-52 8.3E-57 401.7 24.8 239 2-325 8-285 (291)
32 PRK10266 curved DNA-binding pr 100.0 1.5E-50 3.2E-55 393.4 26.0 255 2-326 8-293 (306)
33 KOG0713 Molecular chaperone (D 100.0 8E-38 1.7E-42 297.3 8.5 282 2-314 20-328 (336)
34 TIGR03835 termin_org_DnaJ term 100.0 4.3E-32 9.3E-37 280.1 17.6 162 83-311 655-817 (871)
35 KOG0715 Molecular chaperone (D 100.0 8.4E-33 1.8E-37 265.4 10.5 219 2-248 47-288 (288)
36 PF01556 CTDII: DnaJ C termina 99.9 3.2E-22 6.9E-27 157.3 6.1 81 237-319 1-81 (81)
37 KOG0714 Molecular chaperone (D 99.8 2.6E-18 5.5E-23 164.4 13.4 226 2-290 7-305 (306)
38 COG0484 DnaJ DnaJ-class molecu 99.6 4.3E-15 9.3E-20 145.7 10.9 131 97-241 146-346 (371)
39 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.6 5E-15 1.1E-19 111.7 6.7 65 114-180 1-66 (66)
40 PRK14282 chaperone protein Dna 99.5 1.8E-13 3.9E-18 136.7 10.8 132 97-242 156-360 (369)
41 PRK14285 chaperone protein Dna 99.4 5.5E-13 1.2E-17 133.0 10.4 131 97-241 150-349 (365)
42 PRK14298 chaperone protein Dna 99.4 6.1E-13 1.3E-17 133.1 10.0 132 97-242 145-348 (377)
43 PRK14290 chaperone protein Dna 99.4 5E-13 1.1E-17 133.3 9.1 131 97-242 153-353 (365)
44 PRK14294 chaperone protein Dna 99.4 9.4E-13 2E-17 131.4 10.3 133 97-243 148-348 (366)
45 PRK14279 chaperone protein Dna 99.4 1.7E-12 3.6E-17 130.6 9.1 126 97-236 177-369 (392)
46 PRK14277 chaperone protein Dna 99.4 4.3E-12 9.3E-17 127.5 11.8 127 97-237 159-357 (386)
47 PRK10767 chaperone protein Dna 99.4 1.7E-12 3.7E-17 129.8 8.7 132 97-242 146-345 (371)
48 PRK14300 chaperone protein Dna 99.3 1.6E-12 3.5E-17 130.0 8.1 128 97-238 149-345 (372)
49 PRK14288 chaperone protein Dna 99.3 4.3E-12 9.3E-17 126.8 10.9 129 96-239 143-339 (369)
50 PRK14301 chaperone protein Dna 99.3 4.2E-12 9.1E-17 127.0 10.3 131 97-241 148-346 (373)
51 PRK14284 chaperone protein Dna 99.3 2E-12 4.4E-17 130.1 7.4 131 97-241 162-362 (391)
52 PRK14278 chaperone protein Dna 99.3 6.7E-12 1.5E-16 125.8 10.2 126 97-236 143-341 (378)
53 PRK14295 chaperone protein Dna 99.3 6.7E-12 1.5E-16 126.2 9.0 129 97-239 170-366 (389)
54 PRK14287 chaperone protein Dna 99.3 5.7E-12 1.2E-16 126.0 8.3 131 97-241 142-344 (371)
55 TIGR02349 DnaJ_bact chaperone 99.3 6.1E-12 1.3E-16 125.1 7.7 130 97-240 147-348 (354)
56 PRK14293 chaperone protein Dna 99.3 8.5E-12 1.8E-16 124.9 8.6 132 97-242 147-351 (374)
57 PRK14286 chaperone protein Dna 99.3 1.2E-11 2.5E-16 123.8 9.0 129 97-239 154-351 (372)
58 PRK14280 chaperone protein Dna 99.3 2.2E-11 4.7E-16 122.1 10.9 128 97-238 147-346 (376)
59 PRK14276 chaperone protein Dna 99.3 1.1E-11 2.3E-16 124.4 8.6 129 97-239 150-350 (380)
60 PRK14281 chaperone protein Dna 99.3 1.9E-11 4.2E-16 123.2 10.2 124 97-235 167-362 (397)
61 PRK14292 chaperone protein Dna 99.3 1.6E-11 3.5E-16 122.8 9.5 132 96-240 142-343 (371)
62 KOG0718 Molecular chaperone (D 99.2 4.1E-12 8.9E-17 125.6 3.2 44 3-46 14-83 (546)
63 PRK14296 chaperone protein Dna 99.2 4.2E-11 9.1E-16 119.7 10.3 129 96-238 152-354 (372)
64 PRK14297 chaperone protein Dna 99.2 4.2E-11 9E-16 120.2 9.1 126 97-236 152-349 (380)
65 PTZ00037 DnaJ_C chaperone prot 99.2 7E-11 1.5E-15 119.6 10.5 119 97-228 154-347 (421)
66 PRK14289 chaperone protein Dna 99.2 2.9E-11 6.4E-16 121.6 7.4 124 97-234 158-353 (386)
67 PRK14283 chaperone protein Dna 99.2 1.2E-10 2.5E-15 117.0 10.4 129 97-239 150-350 (378)
68 PTZ00341 Ring-infected erythro 99.1 1.8E-11 3.9E-16 130.8 3.6 60 2-67 577-658 (1136)
69 PRK14291 chaperone protein Dna 99.1 1.1E-10 2.3E-15 117.4 9.0 118 97-229 160-346 (382)
70 KOG0716 Molecular chaperone (D 99.1 2.7E-11 5.9E-16 112.9 3.0 45 2-46 35-102 (279)
71 PHA03102 Small T antigen; Revi 99.0 1.6E-10 3.5E-15 100.8 3.2 62 1-68 8-90 (153)
72 COG2214 CbpA DnaJ-class molecu 99.0 3.1E-09 6.7E-14 97.0 11.1 48 190-238 180-227 (237)
73 PLN03165 chaperone protein dna 98.9 3.3E-09 7.2E-14 87.5 6.4 61 110-184 40-100 (111)
74 PRK14299 chaperone protein Dna 98.9 6.2E-09 1.3E-13 100.9 8.0 73 231-313 125-197 (291)
75 KOG0691 Molecular chaperone (D 98.8 1.2E-09 2.6E-14 105.0 2.0 62 2-68 9-93 (296)
76 TIGR03835 termin_org_DnaJ term 98.8 2.2E-09 4.7E-14 112.8 3.6 92 230-326 651-763 (871)
77 PF00226 DnaJ: DnaJ domain; I 98.8 3.7E-09 7.9E-14 78.8 2.4 37 2-38 4-64 (64)
78 KOG0624 dsRNA-activated protei 98.7 8.6E-09 1.9E-13 99.5 4.4 44 2-46 398-467 (504)
79 KOG0550 Molecular chaperone (D 98.7 1.2E-08 2.6E-13 100.5 3.5 61 2-65 377-461 (486)
80 KOG0717 Molecular chaperone (D 98.7 1E-08 2.2E-13 101.8 3.1 46 2-47 12-81 (508)
81 PRK10266 curved DNA-binding pr 98.6 6.7E-08 1.5E-12 94.4 7.9 75 233-311 115-202 (306)
82 KOG0719 Molecular chaperone (D 98.6 1.6E-08 3.6E-13 92.4 2.3 41 2-42 18-83 (264)
83 PF01556 CTDII: DnaJ C termina 98.5 1.4E-07 3E-12 74.0 4.8 48 186-233 27-76 (81)
84 KOG0712 Molecular chaperone (D 98.5 3.7E-07 8E-12 89.0 7.9 106 113-229 145-324 (337)
85 TIGR02642 phage_xxxx uncharact 98.3 8.8E-07 1.9E-11 79.8 5.8 51 154-205 99-149 (186)
86 KOG0721 Molecular chaperone (D 98.1 2E-06 4.2E-11 78.3 3.3 43 2-44 103-168 (230)
87 smart00271 DnaJ DnaJ molecular 98.1 3.4E-06 7.3E-11 61.7 3.6 32 2-33 5-60 (60)
88 PRK05014 hscB co-chaperone Hsc 97.9 8.5E-06 1.8E-10 73.0 3.4 38 2-39 5-72 (171)
89 COG1107 Archaea-specific RecJ- 97.9 8.9E-06 1.9E-10 83.3 3.5 27 113-139 4-30 (715)
90 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.8 9E-06 2E-10 61.2 2.2 53 99-164 4-66 (66)
91 cd06257 DnaJ DnaJ domain or J- 97.8 1.9E-05 4E-10 56.6 3.5 29 2-30 4-55 (55)
92 PRK01356 hscB co-chaperone Hsc 97.8 1.7E-05 3.7E-10 70.7 3.2 38 2-39 6-71 (166)
93 KOG0720 Molecular chaperone (D 97.7 1.8E-05 3.9E-10 79.2 3.3 39 2-40 239-299 (490)
94 PRK03578 hscB co-chaperone Hsc 97.5 8.4E-05 1.8E-09 66.8 3.4 41 2-42 10-82 (176)
95 PHA02624 large T antigen; Prov 97.5 6.7E-05 1.5E-09 78.6 2.9 37 1-37 14-71 (647)
96 PRK00294 hscB co-chaperone Hsc 97.5 9.6E-05 2.1E-09 66.2 3.4 38 2-39 8-75 (173)
97 KOG2813 Predicted molecular ch 97.4 0.0002 4.3E-09 68.6 4.3 60 111-191 198-277 (406)
98 COG5407 SEC63 Preprotein trans 97.2 0.00018 4E-09 71.9 2.8 43 2-44 102-172 (610)
99 KOG0722 Molecular chaperone (D 97.2 0.0001 2.2E-09 68.7 0.6 39 2-40 37-97 (329)
100 PLN03165 chaperone protein dna 97.1 0.00075 1.6E-08 55.9 5.1 49 97-168 45-100 (111)
101 COG1107 Archaea-specific RecJ- 97.1 0.00063 1.4E-08 70.1 4.6 56 99-168 8-82 (715)
102 KOG2813 Predicted molecular ch 96.1 0.0032 6.9E-08 60.6 2.4 74 98-183 171-258 (406)
103 TIGR02642 phage_xxxx uncharact 95.9 0.005 1.1E-07 55.7 2.4 30 128-168 100-129 (186)
104 TIGR00714 hscB Fe-S protein as 95.8 0.0044 9.6E-08 54.7 1.8 23 17-39 38-60 (157)
105 COG5269 ZUO1 Ribosome-associat 95.1 0.011 2.4E-07 55.8 2.0 24 17-40 90-113 (379)
106 PRK01773 hscB co-chaperone Hsc 94.7 0.029 6.3E-07 50.3 3.3 21 19-39 53-73 (173)
107 PTZ00100 DnaJ chaperone protei 89.3 0.36 7.8E-06 40.4 3.0 24 2-25 69-93 (116)
108 cd03031 GRX_GRX_like Glutaredo 88.9 0.36 7.8E-06 42.1 2.9 24 112-140 100-123 (147)
109 KOG0715 Molecular chaperone (D 83.9 0.43 9.4E-06 46.3 0.9 64 95-172 166-235 (288)
110 KOG2824 Glutaredoxin-related p 83.5 1.2 2.7E-05 42.5 3.6 51 112-177 230-280 (281)
111 KOG2824 Glutaredoxin-related p 83.0 1.1 2.4E-05 42.7 3.2 40 128-183 230-275 (281)
112 TIGR00630 uvra excinuclease AB 82.2 1 2.2E-05 50.5 3.0 33 129-165 738-770 (924)
113 KOG3192 Mitochondrial J-type c 80.3 0.69 1.5E-05 40.5 0.7 22 18-39 58-79 (168)
114 COG0178 UvrA Excinuclease ATPa 76.6 2.6 5.7E-05 46.2 3.8 33 129-165 732-764 (935)
115 PRK00349 uvrA excinuclease ABC 76.5 1.8 4E-05 48.7 2.8 34 128-165 739-772 (943)
116 PF07709 SRR: Seven Residue Re 75.6 2.2 4.8E-05 21.9 1.5 13 17-29 2-14 (14)
117 PRK14714 DNA polymerase II lar 73.2 4 8.7E-05 46.6 4.3 65 94-179 643-718 (1337)
118 PRK00635 excinuclease ABC subu 71.6 2.6 5.7E-05 50.3 2.6 25 298-325 1721-1746(1809)
119 cd03031 GRX_GRX_like Glutaredo 71.4 4.5 9.7E-05 35.3 3.4 39 128-182 100-145 (147)
120 PRK09430 djlA Dna-J like membr 71.0 3.7 7.9E-05 39.4 3.0 23 2-24 204-227 (267)
121 KOG0568 Molecular chaperone (D 70.4 3.2 7E-05 38.7 2.3 29 2-30 51-102 (342)
122 PRK04023 DNA polymerase II lar 68.8 4.2 9E-05 45.5 3.1 67 94-183 609-676 (1121)
123 TIGR00630 uvra excinuclease AB 67.2 2.8 6.1E-05 47.2 1.5 34 154-187 736-776 (924)
124 smart00709 Zpr1 Duplicated dom 66.8 31 0.00067 30.5 7.8 21 186-206 80-100 (160)
125 TIGR00310 ZPR1_znf ZPR1 zinc f 62.2 21 0.00045 32.6 5.9 35 129-163 2-39 (192)
126 PRK00349 uvrA excinuclease ABC 61.7 5.4 0.00012 45.0 2.4 36 154-189 738-780 (943)
127 TIGR00340 zpr1_rel ZPR1-relate 60.9 47 0.001 29.5 7.8 27 253-285 72-98 (163)
128 TIGR00757 RNaseEG ribonuclease 59.3 5.4 0.00012 40.8 1.8 29 140-168 376-404 (414)
129 KOG1150 Predicted molecular ch 58.4 8.5 0.00019 35.2 2.6 36 2-37 57-116 (250)
130 KOG3960 Myogenic helix-loop-he 56.4 7.8 0.00017 36.6 2.1 27 8-34 120-151 (284)
131 PF12991 DUF3875: Domain of un 51.0 19 0.00041 25.8 2.8 25 296-320 26-52 (54)
132 PRK00488 pheS phenylalanyl-tRN 49.1 16 0.00034 36.3 3.1 32 108-150 257-288 (339)
133 PRK14559 putative protein seri 48.6 12 0.00027 40.4 2.5 49 112-179 2-50 (645)
134 COG1198 PriA Primosomal protei 47.3 22 0.00048 39.0 4.1 50 111-179 435-484 (730)
135 TIGR00595 priA primosomal prot 46.9 22 0.00048 37.3 4.0 53 111-182 213-265 (505)
136 cd05792 S1_eIF1AD_like S1_eIF1 46.6 97 0.0021 24.0 6.5 23 249-271 8-31 (78)
137 PRK11712 ribonuclease G; Provi 45.5 9.5 0.0002 39.9 1.0 29 140-168 388-416 (489)
138 PRK00464 nrdR transcriptional 45.1 20 0.00043 31.6 2.8 35 129-163 2-37 (154)
139 PRK00635 excinuclease ABC subu 44.7 7.9 0.00017 46.5 0.3 16 312-327 1700-1717(1809)
140 PF02814 UreE_N: UreE urease a 43.8 53 0.0011 24.2 4.6 32 254-285 30-61 (65)
141 PRK05580 primosome assembly pr 42.9 22 0.00048 38.8 3.3 62 100-180 365-431 (679)
142 PRK12336 translation initiatio 42.8 95 0.0021 28.4 7.0 35 186-220 149-184 (201)
143 PF13446 RPT: A repeated domai 42.5 25 0.00055 25.5 2.6 32 2-38 9-41 (62)
144 PF03589 Antiterm: Antitermina 42.1 11 0.00024 30.4 0.7 12 155-166 33-44 (95)
145 TIGR03655 anti_R_Lar restricti 41.2 34 0.00073 24.2 3.0 12 129-140 3-14 (53)
146 PRK03564 formate dehydrogenase 41.0 31 0.00066 33.9 3.7 10 111-120 187-196 (309)
147 PRK12380 hydrogenase nickel in 39.6 27 0.00058 29.0 2.6 28 111-138 70-97 (113)
148 PF08273 Prim_Zn_Ribbon: Zinc- 39.0 26 0.00057 23.6 2.0 13 110-122 2-14 (40)
149 PF14205 Cys_rich_KTR: Cystein 39.0 55 0.0012 23.6 3.7 11 173-183 31-41 (55)
150 smart00143 PI3K_p85B PI3-kinas 37.9 37 0.0008 26.4 2.9 31 3-33 3-37 (78)
151 PF04628 Sedlin_N: Sedlin, N-t 37.7 27 0.00059 29.6 2.5 24 8-31 84-109 (132)
152 PF04246 RseC_MucC: Positive r 37.1 42 0.00091 28.4 3.6 20 186-205 42-61 (135)
153 COG0178 UvrA Excinuclease ATPa 37.1 20 0.00043 39.7 1.8 35 105-139 723-765 (935)
154 PF13719 zinc_ribbon_5: zinc-r 37.0 14 0.00031 24.2 0.5 9 128-136 3-11 (37)
155 COG5216 Uncharacterized conser 37.0 32 0.0007 25.1 2.3 16 90-105 30-45 (67)
156 COG1076 DjlA DnaJ-domain-conta 36.4 16 0.00035 32.6 0.9 23 17-39 50-72 (174)
157 PF07092 DUF1356: Protein of u 35.0 20 0.00043 33.8 1.2 14 155-168 39-52 (238)
158 TIGR00100 hypA hydrogenase nic 35.0 36 0.00078 28.3 2.7 28 111-138 70-97 (115)
159 PF09475 Dot_icm_IcmQ: Dot/Icm 34.2 13 0.00029 32.9 0.0 35 9-43 98-145 (179)
160 COG1326 Uncharacterized archae 34.1 53 0.0012 29.9 3.8 22 186-207 63-86 (201)
161 PF03833 PolC_DP2: DNA polymer 33.9 14 0.0003 40.9 0.0 55 111-187 655-709 (900)
162 PF14353 CpXC: CpXC protein 33.5 27 0.00058 29.3 1.7 13 154-166 38-50 (128)
163 PF10080 DUF2318: Predicted me 33.3 59 0.0013 26.5 3.6 23 155-177 36-59 (102)
164 PF13248 zf-ribbon_3: zinc-rib 33.3 19 0.00042 21.6 0.6 22 154-177 2-23 (26)
165 PF11833 DUF3353: Protein of u 32.5 45 0.00098 30.5 3.2 10 7-16 1-10 (194)
166 PF06975 DUF1299: Protein of u 32.1 13 0.00029 25.1 -0.2 11 22-32 10-20 (47)
167 PLN00208 translation initiatio 31.2 1.8E+02 0.0038 25.4 6.4 59 251-323 43-106 (145)
168 PF07092 DUF1356: Protein of u 31.2 22 0.00047 33.5 0.9 14 111-124 38-51 (238)
169 PF08792 A2L_zn_ribbon: A2L zi 31.1 43 0.00092 21.5 2.0 12 128-139 4-15 (33)
170 PF03367 zf-ZPR1: ZPR1 zinc-fi 31.1 61 0.0013 28.7 3.6 34 128-161 2-37 (161)
171 PF12387 Peptidase_C74: Pestiv 30.5 25 0.00055 31.3 1.1 25 112-139 163-187 (200)
172 KOG0724 Zuotin and related mol 30.5 29 0.00062 34.2 1.7 24 17-40 38-61 (335)
173 COG2190 NagE Phosphotransferas 30.2 60 0.0013 28.6 3.4 47 255-308 63-112 (156)
174 TIGR01562 FdhE formate dehydro 30.0 53 0.0012 32.2 3.4 9 112-120 185-193 (305)
175 PF01155 HypA: Hydrogenase exp 29.5 27 0.00058 28.9 1.1 28 111-138 70-97 (113)
176 PRK12380 hydrogenase nickel in 29.3 1.2E+02 0.0025 25.1 4.9 7 128-134 71-77 (113)
177 PF03656 Pam16: Pam16; InterP 29.3 31 0.00066 29.4 1.4 18 2-19 62-80 (127)
178 KOG0723 Molecular chaperone (D 28.4 48 0.001 27.3 2.3 21 2-22 60-81 (112)
179 PF01155 HypA: Hydrogenase exp 28.2 60 0.0013 26.8 3.0 8 128-135 71-78 (113)
180 KOG0315 G-protein beta subunit 27.3 41 0.0009 32.1 2.0 32 240-271 18-50 (311)
181 cd02639 R3H_RRM R3H domain of 26.4 82 0.0018 23.1 3.0 22 303-324 17-38 (60)
182 cd05793 S1_IF1A S1_IF1A: Trans 26.4 2.6E+02 0.0057 21.4 6.0 60 249-322 9-73 (77)
183 PF08271 TF_Zn_Ribbon: TFIIB z 24.9 45 0.00098 22.3 1.4 9 129-137 2-10 (43)
184 PRK00564 hypA hydrogenase nick 24.3 90 0.0019 26.0 3.3 30 110-139 70-100 (117)
185 TIGR00100 hypA hydrogenase nic 23.8 94 0.002 25.8 3.3 8 127-134 70-77 (115)
186 PRK14873 primosome assembly pr 23.7 74 0.0016 34.7 3.4 60 100-180 368-432 (665)
187 CHL00062 psbB photosystem II 4 23.3 1.4E+02 0.0031 30.9 5.0 26 21-48 298-323 (504)
188 COG1530 CafA Ribonucleases G a 23.3 83 0.0018 33.0 3.5 27 142-168 383-409 (487)
189 TIGR00523 eIF-1A eukaryotic/ar 23.2 3.4E+02 0.0074 21.9 6.4 59 252-323 31-94 (99)
190 PTZ00329 eukaryotic translatio 23.1 3E+02 0.0066 24.2 6.4 58 252-323 44-106 (155)
191 PF02426 MIase: Muconolactone 23.0 1.3E+02 0.0029 24.0 3.9 22 300-321 3-24 (91)
192 TIGR02538 type_IV_pilB type IV 22.6 42 0.00091 35.7 1.2 11 155-165 489-499 (564)
193 KOG3799 Rab3 effector RIM1 and 22.5 36 0.00079 29.1 0.6 29 106-134 60-88 (169)
194 cd01129 PulE-GspE PulE/GspE Th 22.2 36 0.00079 32.4 0.6 11 155-165 251-261 (264)
195 PF07295 DUF1451: Protein of u 21.9 1E+02 0.0022 26.9 3.3 7 128-134 113-119 (146)
196 PF08774 VRR_NUC: VRR-NUC doma 21.4 1.3E+02 0.0028 23.8 3.6 27 300-326 62-89 (100)
197 PF13717 zinc_ribbon_4: zinc-r 21.3 48 0.001 21.6 0.9 8 128-135 3-10 (36)
198 PF14354 Lar_restr_allev: Rest 20.9 96 0.0021 22.1 2.5 13 128-141 4-16 (61)
199 TIGR03221 muco_delta muconolac 20.7 1.6E+02 0.0035 23.5 3.9 21 301-321 3-23 (90)
200 TIGR02527 dot_icm_IcmQ Dot/Icm 20.7 35 0.00076 30.4 0.2 39 5-43 94-145 (182)
201 cd04479 RPA3 RPA3: A subfamily 20.5 4.5E+02 0.0097 21.0 7.5 69 251-326 28-96 (101)
202 COG3364 Zn-ribbon containing p 20.3 2.2E+02 0.0049 23.3 4.6 11 173-183 23-33 (112)
203 PF13453 zf-TFIIB: Transcripti 20.1 71 0.0015 21.1 1.6 6 130-135 2-7 (41)
No 1
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=9.9e-92 Score=704.41 Aligned_cols=367 Identities=45% Similarity=0.868 Sum_probs=329.3
Q ss_pred cccCCCCCCCHHHHH-------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCCCCCCCccchh
Q 016758 2 RFSESRKNASQDDLK-------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPFDIF 62 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~~~~~~~~d~F 62 (383)
+||||+++||++||| +|++|++||||||||+||++||+||++++.++. ++.++.|+|
T Consensus 32 ~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~----~~~d~~d~f 107 (421)
T PTZ00037 32 EVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE----QPADASDLF 107 (421)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC----CCcchhhhH
Confidence 689999999999999 999999999999999999999999998876321 224677999
Q ss_pred hcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCceeeCCCCcccceEEEE
Q 016758 63 QSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSI 142 (383)
Q Consensus 63 ~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~ 142 (383)
+.|||++ + ++.+++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|+..+...+|+.|+|+|+++..
T Consensus 108 ~~~Fggg----~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~ 181 (421)
T PTZ00037 108 DLIFGGG----R--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQI 181 (421)
T ss_pred HHhhccc----c--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEE
Confidence 9999742 1 112346799999999999999999999999999999999999999877766899999999999999
Q ss_pred EecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCCCCCcccEEEE
Q 016758 143 RHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFV 222 (383)
Q Consensus 143 ~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv~ 222 (383)
+++|| |++|++.+|+.|+|+|+++.++++|+.|+|.+++.+.++|+|+||||+++|++|+|+|+|++.++..||||||+
T Consensus 182 ~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~ 260 (421)
T PTZ00037 182 RQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFI 260 (421)
T ss_pred Eeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEE
Confidence 99999 99999999999999999999889999999999999999999999999999999999999999888899999999
Q ss_pred EEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCCCCCceEE
Q 016758 223 LQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYI 302 (383)
Q Consensus 223 i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i 302 (383)
|.+++|+.|+|+|+|||++++|||+|||+|+++.|+||||+.|.|++|||+|++||++++|+|+|||..++++.+|||||
T Consensus 261 I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V 340 (421)
T PTZ00037 261 LNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYV 340 (421)
T ss_pred EEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766667999999
Q ss_pred EEEEeCC--CCCCHHHHHHHHhhCCCCCCCCCccCcccccceeeeccCChhHHHHHHhhhcccccccCCCC--CCCCCCC
Q 016758 303 HFTVDFP--ESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDEDDDM--QGGAQRV 378 (383)
Q Consensus 303 ~f~V~~P--~~l~~~~~~~l~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 378 (383)
+|+|.|| +.||++|+++|++|||.++.... +++++++|++++++||+++...+ .++++|+||+|+ ++++++|
T Consensus 341 ~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v 416 (421)
T PTZ00037 341 TFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQEDEDDEHHQEGERV 416 (421)
T ss_pred EEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhccccccccCCCCCcc
Confidence 9999999 88999999999999997654443 56678899999999999875444 234566544433 3577999
Q ss_pred CCcCC
Q 016758 379 QCAQQ 383 (383)
Q Consensus 379 ~C~~q 383 (383)
|||||
T Consensus 417 ~c~~q 421 (421)
T PTZ00037 417 ACRQQ 421 (421)
T ss_pred ccCCC
Confidence 99998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-84 Score=632.47 Aligned_cols=315 Identities=38% Similarity=0.694 Sum_probs=285.2
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCC--CC-C
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG--GG-A 55 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~--~~-~ 55 (383)
+||||+++||++||| |||||+|||||||||+||++||+||+++++++.+++ ++ +
T Consensus 8 eiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g~~~f 87 (371)
T COG0484 8 EILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGGF 87 (371)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCCcCCC
Confidence 699999999999999 999999999999999999999999999986322221 11 1
Q ss_pred C-CccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCc-eeeCCCC
Q 016758 56 H-DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA-SMKCSGC 133 (383)
Q Consensus 56 ~-~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~-~~~C~~C 133 (383)
. ++.|||++||||+++ +++++++++++.|+.+.|+|||+|+|.|++++|.+++.+.|++|+|+|++.++ ..+|++|
T Consensus 88 gg~~~DIF~~~FgGg~~--~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC 165 (371)
T COG0484 88 GGDFGDIFEDFFGGGGG--GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTC 165 (371)
T ss_pred CCCHHHHHHHhhcCCCc--ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCC
Confidence 2 588999999974322 22334567899999999999999999999999999999999999999999985 4899999
Q ss_pred cccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCC-
Q 016758 134 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP- 212 (383)
Q Consensus 134 ~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~- 212 (383)
+|+|++...+++ ++++++++|+.|+|+|++++ ++|+.|+|.+++.+.++|+|+||+|+.+|++|++.|+|++.+
T Consensus 166 ~G~G~v~~~~~~---g~~~~~~~C~~C~G~G~~i~--~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~ 240 (371)
T COG0484 166 NGSGQVRTVQRT---GFFSFQQTCPTCNGTGKIIK--DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPN 240 (371)
T ss_pred CCcCeEEEEEee---eEEEEEEECCCCccceeECC--CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCC
Confidence 999999888888 45678999999999999994 999999999999999999999999999999999999999965
Q ss_pred CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCC
Q 016758 213 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 292 (383)
Q Consensus 213 ~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~ 292 (383)
++.+|||||+|.|++|+.|+|+|+|||++++|++.+|++|+++.|+||||+ +.|+|||| +++|++++|+|+|||..+
T Consensus 241 Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~gkG~p~~~ 317 (371)
T COG0484 241 GGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRGKGMPKLR 317 (371)
T ss_pred CCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcCCCccccC
Confidence 677899999999999999999999999999999999999999999999999 89999999 588999999999999864
Q ss_pred CCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCCC
Q 016758 293 RPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 327 (383)
Q Consensus 293 ~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~~ 327 (383)
...+|||||+++|++|++|+.+|+++|+++....
T Consensus 318 -~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 318 -SGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred -CCCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4467999999999999999999999999998744
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.5e-78 Score=598.98 Aligned_cols=314 Identities=28% Similarity=0.532 Sum_probs=280.7
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccC--cCCC-C---
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEG--MGGG-G--- 53 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g--~~~~-~--- 53 (383)
+||||+++||++||| +||+|++||||||||+||++||+||+++++++ ++++ +
T Consensus 8 ~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~~~~~~ 87 (372)
T PRK14296 8 EVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSNFGDFE 87 (372)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcCCCccc
Confidence 589999999999999 89999999999999999999999999877531 1111 0
Q ss_pred ---------CCCCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCccc
Q 016758 54 ---------GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKS 124 (383)
Q Consensus 54 ---------~~~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 124 (383)
++.++.|+|++|||++ + .+.+++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|+..
T Consensus 88 ~~~~~~~~~g~~~f~d~f~~~fggg----~-~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~ 162 (372)
T PRK14296 88 DLFSNMGSSGFSSFTNIFSDFFGSN----K-SDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAES 162 (372)
T ss_pred cccccccccccccchhhhhhhcCCC----c-cCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCC
Confidence 1123457888888742 1 1123356789999999999999999999999999999999999999987
Q ss_pred Cce-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEE
Q 016758 125 GAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKIT 203 (383)
Q Consensus 125 ~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~ 203 (383)
+.. .+|+.|+|+|+++..+++|| |++|++++|+.|+|+|+++. +.|+.|+|.+++.+.++++|.||||+++|++|+
T Consensus 163 ~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~ 239 (372)
T PRK14296 163 NSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIK 239 (372)
T ss_pred CCCCccCCCCCCCceEEEEEeccc-eEEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCCCCCEEE
Confidence 764 78999999999999999999 66688999999999999986 889999999999999999999999999999999
Q ss_pred ecCCcCCC-CCCCcccEEEEEEEeeCCccccc-cccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEE
Q 016758 204 FPGEADEA-PDTVTGDIVFVLQQKEHPKFKRK-GDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFK 281 (383)
Q Consensus 204 ~~g~G~~~-~~~~~GDliv~i~vk~h~~f~R~-g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~ 281 (383)
|+|+|++. ++..+|||||+|++++|+.|+|+ |+|||++++|||+|||+|+++.|+||||+ +.|+||++ ++||+++
T Consensus 240 ~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~~g~~~ 316 (372)
T PRK14296 240 LSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--INSNELI 316 (372)
T ss_pred EeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cCCCcEE
Confidence 99999985 57789999999999999999995 89999999999999999999999999998 89999987 7999999
Q ss_pred EEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 282 AINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 282 ~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
+|+|+|||...+++.+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 317 ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~ 361 (372)
T PRK14296 317 IINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQ 361 (372)
T ss_pred EEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 999999997655567899999999999999999999999999964
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-78 Score=578.11 Aligned_cols=310 Identities=58% Similarity=1.019 Sum_probs=289.7
Q ss_pred cccCCCCCCCHHHHH--------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCCCCCCCccch
Q 016758 2 RFSESRKNASQDDLK--------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPFDI 61 (383)
Q Consensus 2 ~iLGV~~~As~~EIK--------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~~~~~~~~d~ 61 (383)
+||||+++||++||| |||||++||||||||+||++||+||++++++|.++++ ++.
T Consensus 8 ~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g-~~~---- 82 (337)
T KOG0712|consen 8 DILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG-FGG---- 82 (337)
T ss_pred eeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC-Ccc----
Confidence 689999999999999 9999999999999999999999999999976533322 222
Q ss_pred hhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCceeeCCCCcccceEEE
Q 016758 62 FQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVS 141 (383)
Q Consensus 62 F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 141 (383)
|++||+.+ +. +.+++.|++|++|.|+|||||+|.|+++++.++++.+|+.|+|+|..+++..+|+.|.|+|..+.
T Consensus 83 f~~~F~~g---~~--~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~ 157 (337)
T KOG0712|consen 83 FSQFFGFG---GN--GGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTR 157 (337)
T ss_pred HHHhccCC---Cc--CccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeE
Confidence 88888732 11 12333449999999999999999999999999999999999999999998899999999999999
Q ss_pred EEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCCCCCcccEEE
Q 016758 142 IRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVF 221 (383)
Q Consensus 142 ~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv 221 (383)
++++||||+|+++..|..|+|+|.++..+++|+.|.|.+++.+.+.++|+|++|++++++|++.|++++.++..|||+++
T Consensus 158 ~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl 237 (337)
T KOG0712|consen 158 TRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVL 237 (337)
T ss_pred EEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCCCCCceE
Q 016758 222 VLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLY 301 (383)
Q Consensus 222 ~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~ 301 (383)
.|..++|+.|.|+|+||++..+|+|.|||+||.+.+.||||+.|.+.++||+||+||++++|+|+|||+++++ +||||
T Consensus 238 ~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~--~g~ly 315 (337)
T KOG0712|consen 238 LIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP--KGDLY 315 (337)
T ss_pred EecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC--CCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877 99999
Q ss_pred EEEEEeCCCCCCHHHHHHHHhhC
Q 016758 302 IHFTVDFPESLSPDQCKMLETVL 324 (383)
Q Consensus 302 i~f~V~~P~~l~~~~~~~l~~~l 324 (383)
|+|+|+||+ ++++++.+|+++|
T Consensus 316 i~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 316 IKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred EEEEEEcCC-CChHHHHHHHhhC
Confidence 999999999 9999999999876
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-76 Score=586.07 Aligned_cols=312 Identities=27% Similarity=0.530 Sum_probs=273.0
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCCCCCCCc
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDP 58 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~~~~~~~ 58 (383)
+||||+++||++||| +||+|++||||||||+||++||+||++++.++.+++.++.++
T Consensus 7 ~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~~~~~~ 86 (369)
T PRK14288 7 EILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQSDFSDF 86 (369)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCccccccc
Confidence 699999999999999 899999999999999999999999998876321111122222
Q ss_pred ----cchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCceeeCCCCc
Q 016758 59 ----FDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQ 134 (383)
Q Consensus 59 ----~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 134 (383)
.++|+.|||++ +.+++..+++++.|+.+.|.|||+|+|+|+++++.++|.+.|+.|+|+|+......+|+.|+
T Consensus 87 f~~~~~~F~~~fg~g---~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 163 (369)
T PRK14288 87 FEDLGSFFEDAFGFG---ARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCN 163 (369)
T ss_pred hhhHHHHHHhhcCCC---CcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCC
Confidence 24566666532 11111223467899999999999999999999999999999999999999887668999999
Q ss_pred ccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCCCC
Q 016758 135 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 214 (383)
Q Consensus 135 G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 214 (383)
|+|+++..+ |++ +++++|+.|.|+|+++. +.|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.++.
T Consensus 164 G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~ 236 (369)
T PRK14288 164 GQGQVFMRQ----GFM-SFAQTCGACQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKG 236 (369)
T ss_pred CCcEEEEEe----ceE-EEEEecCCCCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCC
Confidence 999876443 455 56679999999999986 78999999999999999999999999999999999999998888
Q ss_pred CcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCC
Q 016758 215 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 294 (383)
Q Consensus 215 ~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~ 294 (383)
.+|||||+|.+++|+.|+|+|+|||++++|||.|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||..+ +
T Consensus 237 ~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p~~~-~ 313 (369)
T PRK14288 237 KRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVKHPE-S 313 (369)
T ss_pred CCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCCCCC-C
Confidence 8999999999999999999999999999999999999999999999999889999997 799999999999999764 3
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 295 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 295 ~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
..+|||||+|+|.||+.|+++|+++|+++++.
T Consensus 314 ~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~ 345 (369)
T PRK14288 314 SYRGSLIVELQVIYPKSLNKEQQELLEKLHAS 345 (369)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45899999999999999999999999999974
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-75 Score=579.18 Aligned_cols=314 Identities=32% Similarity=0.594 Sum_probs=280.3
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCC-----CCC
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-----GGG 54 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~-----~~~ 54 (383)
+||||+++||.+||| +|++|++||||||||+||++||+||++++++++++ +++
T Consensus 9 ~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~ 88 (377)
T PRK14298 9 EILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGAD 88 (377)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccccccCC
Confidence 689999999999999 89999999999999999999999999887643211 112
Q ss_pred CCCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeCCCC
Q 016758 55 AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGC 133 (383)
Q Consensus 55 ~~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C 133 (383)
+.++.|+|++|||+++ +.++++++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|+..+.. .+|+.|
T Consensus 89 ~~~~~d~f~~~Fgg~~----~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 164 (377)
T PRK14298 89 FGGFGDIFEMFFGGGG----RRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTC 164 (377)
T ss_pred cCcchhhhHhhhcCCC----ccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCC
Confidence 2345689999997421 11123356899999999999999999999999999999999999999998765 789999
Q ss_pred cccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCC-C
Q 016758 134 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-P 212 (383)
Q Consensus 134 ~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~ 212 (383)
+|+|+++..+++ |++++|++++|+.|+|+|+++. +.|+.|+|++++.+.++++|.||||+++|++|+|+|+|++. +
T Consensus 165 ~G~G~~~~~~~~-~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~ 241 (377)
T PRK14298 165 GGTGQVTTTRST-PLGQFVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSP 241 (377)
T ss_pred CCccEEEEEEec-CceeEEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCC
Confidence 999999988885 5455689999999999999986 78999999999999999999999999999999999999985 5
Q ss_pred CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCC
Q 016758 213 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 292 (383)
Q Consensus 213 ~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~ 292 (383)
+..+|||||+|.+++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||..+
T Consensus 242 ~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~g~G~p~~~ 318 (377)
T PRK14298 242 GAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLKDKGMPRLH 318 (377)
T ss_pred CCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEECCCCCCCCC
Confidence 778999999999999999999999999999999999999999999999998 78999998 799999999999999764
Q ss_pred CCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 293 RPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 293 ~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
. ..+|||||+|+|.||+.|+++++++|++++..
T Consensus 319 ~-~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~ 351 (377)
T PRK14298 319 G-HGKGDQLVKVIVKTPTKLTQEQKELLREFDEL 351 (377)
T ss_pred C-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 46899999999999999999999999999863
No 7
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.5e-75 Score=578.35 Aligned_cols=314 Identities=32% Similarity=0.621 Sum_probs=280.4
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCCC----C-
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGG----G- 54 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~~----~- 54 (383)
+||||+++||.+||| +|++|++||||||||+||++||+||++++++++++++ +
T Consensus 8 ~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~~ 87 (376)
T PRK14280 8 EVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFGGGDF 87 (376)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCCCCCc
Confidence 689999999999999 9999999999999999999999999988764321110 1
Q ss_pred --CCCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeCC
Q 016758 55 --AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCS 131 (383)
Q Consensus 55 --~~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~ 131 (383)
++++.|+|++|||+++ ++..++.++++.|+.+.|.|||||+|+|+++++.++|.+.|+.|+|+|...+.. .+|+
T Consensus 88 ~~~~~~~d~f~~~fgg~~---~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 164 (376)
T PRK14280 88 GGGFGFEDIFSSFFGGGG---RRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCS 164 (376)
T ss_pred cccccchhhHHHHhCCcc---ccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCC
Confidence 1246689999997421 111123346799999999999999999999999999999999999999987764 7899
Q ss_pred CCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCC
Q 016758 132 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 211 (383)
Q Consensus 132 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 211 (383)
.|+|+|+++..++++|||++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.++++|.||+|+++|++|+|+|+|++.
T Consensus 165 ~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~ 241 (376)
T PRK14280 165 HCGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPG 241 (376)
T ss_pred CCCCEEEEEEEeecCCceEE-EEEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCC
Confidence 99999999999999999987 5779999999999985 88999999999999999999999999999999999999985
Q ss_pred C-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCC
Q 016758 212 P-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 290 (383)
Q Consensus 212 ~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~ 290 (383)
+ +..+|||||+|++++|+.|+|+|+|||+++.|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|||.
T Consensus 242 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~ 318 (376)
T PRK14280 242 VNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKGKGVPN 318 (376)
T ss_pred CCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcCCCCCC
Confidence 4 567899999999999999999999999999999999999999999999997 78999998 7999999999999997
Q ss_pred CCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 016758 291 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325 (383)
Q Consensus 291 ~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp 325 (383)
.+. ..+|||||+|+|.||+.||++|+++|++++.
T Consensus 319 ~~~-~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~ 352 (376)
T PRK14280 319 VRG-YGQGDQYVVVRVVTPTKLTDRQKELLREFAE 352 (376)
T ss_pred CCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 643 3689999999999999999999999999985
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.7e-75 Score=579.50 Aligned_cols=314 Identities=30% Similarity=0.565 Sum_probs=281.0
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCC---C-C--
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG---G-G-- 53 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~---~-~-- 53 (383)
+||||+++||.+||| +|++|++||||||||+||++||+||++++++++++ + +
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~~~~~ 87 (380)
T PRK14276 8 DRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGF 87 (380)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCCCCCc
Confidence 689999999999999 89999999999999999999999999887643211 1 0
Q ss_pred ----CCCCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-e
Q 016758 54 ----GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-M 128 (383)
Q Consensus 54 ----~~~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~ 128 (383)
++.++.|+|++|||+++ +.+.+..++++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|+..+.. .
T Consensus 88 ~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~ 164 (380)
T PRK14276 88 DGSGGFGGFEDIFSSFFGGGG---ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPV 164 (380)
T ss_pred cccccccchhhHHHHHhCccc---cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCc
Confidence 12345689999997421 111123346789999999999999999999999999999999999999987764 7
Q ss_pred eCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCc
Q 016758 129 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 208 (383)
Q Consensus 129 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G 208 (383)
+|+.|+|+|+++..++++|||+++ +.+|+.|+|+|+++. +.|+.|+|.+++.+.++++|+||+|+++|++|+|+|+|
T Consensus 165 ~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G 241 (380)
T PRK14276 165 TCGKCHGSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQG 241 (380)
T ss_pred cCCCCCCeeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccc
Confidence 899999999999999999999986 779999999999985 88999999999999999999999999999999999999
Q ss_pred CCCC-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCC
Q 016758 209 DEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEG 287 (383)
Q Consensus 209 ~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~G 287 (383)
++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||+| +++|++++|+|+|
T Consensus 242 ~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~i~g~G 318 (380)
T PRK14276 242 EAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFRLRGKG 318 (380)
T ss_pred cCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEEECCCC
Confidence 9865 456799999999999999999999999999999999999999999999998 78999998 7999999999999
Q ss_pred CCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 016758 288 MPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325 (383)
Q Consensus 288 mp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp 325 (383)
||..+. ..+|||||+|+|.||+.|+++|+++|++++.
T Consensus 319 ~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~ 355 (380)
T PRK14276 319 APKLRG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAK 355 (380)
T ss_pred cCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 997643 3579999999999999999999999999995
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7e-75 Score=576.84 Aligned_cols=315 Identities=28% Similarity=0.573 Sum_probs=281.4
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCC-C-CCCCC
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-GGAHD 57 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~-~-~~~~~ 57 (383)
+||||+++||.+||| +|++|++||||||||+||++||+||++++.+++++ + +++.+
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~~~f~~ 87 (371)
T PRK14287 8 EVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGG 87 (371)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCCccccc
Confidence 689999999999999 89999999999999999999999999887643211 1 12234
Q ss_pred ccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeCCCCccc
Q 016758 58 PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGS 136 (383)
Q Consensus 58 ~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~ 136 (383)
+.|+|++|||+++ +.+.+..+.++.|+.+.|.|||+|+|+|+++++.+.|.+.|+.|+|+|+..+.. .+|+.|+|+
T Consensus 88 ~~d~f~~~fgg~~---~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 164 (371)
T PRK14287 88 FSDIFDMFFGGGG---GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGS 164 (371)
T ss_pred hHHHHHhhhcccc---CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCE
Confidence 5689999997421 111122345799999999999999999999999999999999999999987664 789999999
Q ss_pred ceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCC-CCC
Q 016758 137 GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTV 215 (383)
Q Consensus 137 G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~ 215 (383)
|+++..++++|||+++ +.+|+.|.|+|+++. +.|..|+|++++.+.++++|.||||+++|++|+|+|+|++.+ +..
T Consensus 165 G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~ 241 (371)
T PRK14287 165 GQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGP 241 (371)
T ss_pred EEEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCC
Confidence 9999999999999876 779999999999986 889999999999999999999999999999999999999864 567
Q ss_pred cccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCC
Q 016758 216 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 295 (383)
Q Consensus 216 ~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~ 295 (383)
+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||..++ .
T Consensus 242 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~~-~ 317 (371)
T PRK14287 242 PGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPNVHG-R 317 (371)
T ss_pred CccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccCCCC-C
Confidence 899999999999999999999999999999999999999999999998 78999998 7999999999999997643 3
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 296 MRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 296 ~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
.+|||||+|+|.||+.|+++|+++|++++..
T Consensus 318 ~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 348 (371)
T PRK14287 318 GQGDQHVQVRVVTPKNLTEKEKELMREFAGM 348 (371)
T ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999999999999953
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.1e-75 Score=576.61 Aligned_cols=315 Identities=31% Similarity=0.647 Sum_probs=276.2
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCC-C-CC--
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-GG-- 54 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~-~-~~-- 54 (383)
+||||+++||.+||| +|++|++||||||||+||++||+||+++++.+.++ + ++
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~ 87 (372)
T PRK14286 8 DILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQGAYT 87 (372)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCCCCcc
Confidence 689999999999999 99999999999999999999999999887632111 1 11
Q ss_pred -----CCCccchhhcccCCCCCCC-CCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-
Q 016758 55 -----AHDPFDIFQSFFGGSPFGG-GSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS- 127 (383)
Q Consensus 55 -----~~~~~d~F~~~Fgg~~f~~-~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~- 127 (383)
+.++.|+|++|||+++.++ .+.+..++.++.|+.+.|.|||||+|+|+++++.++|.+.|++|+|+|+..+..
T Consensus 88 ~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~ 167 (372)
T PRK14286 88 DFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSP 167 (372)
T ss_pred cccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCC
Confidence 1245589999998531110 011123346799999999999999999999999999999999999999987765
Q ss_pred eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCC
Q 016758 128 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 207 (383)
Q Consensus 128 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~ 207 (383)
.+|+.|+|+|+++..+ ||+ |++++|+.|+|+|+++. +.|+.|+|++++.+.++++|+||||+++|++|+|+|+
T Consensus 168 ~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~ 240 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQ----GFF-SVATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGE 240 (372)
T ss_pred ccCCCCcCeEEEEEEe----ceE-EEEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCc
Confidence 7899999999876543 566 47889999999999986 8899999999999999999999999999999999999
Q ss_pred cCCCC-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCC
Q 016758 208 ADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDE 286 (383)
Q Consensus 208 G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~ 286 (383)
|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+.|.|+||++ ++||++++|+|+
T Consensus 241 G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ri~G~ 318 (372)
T PRK14286 241 GEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVFRLKGH 318 (372)
T ss_pred cccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEEEECCC
Confidence 99866 456799999999999999999999999999999999999999999999999999999998 799999999999
Q ss_pred CCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 287 GMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 287 Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
|||..+. ..+|||||+|+|.||+.|+++|+++|++++..
T Consensus 319 G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 357 (372)
T PRK14286 319 GMPYLGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFARE 357 (372)
T ss_pred CCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9997643 46899999999999999999999999999964
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-74 Score=575.23 Aligned_cols=317 Identities=30% Similarity=0.588 Sum_probs=279.9
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCc-CCC--CCCC
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGM-GGG--GGAH 56 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~-~~~--~~~~ 56 (383)
+||||+++||.+||| +|++|++||||||||+||++||+||+++..++. +++ +++.
T Consensus 7 ~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~~~f~ 86 (378)
T PRK14278 7 GLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFGGGFG 86 (378)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCCcCcC
Confidence 699999999999999 899999999999999999999999986433211 111 1123
Q ss_pred CccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeCCCCcc
Q 016758 57 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQG 135 (383)
Q Consensus 57 ~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 135 (383)
++.|+|++|||+++ ++......++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|+..+.. .+|+.|+|
T Consensus 87 ~~~d~f~~ffgg~g--~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G 164 (378)
T PRK14278 87 GLGDVFEAFFGGGA--ASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGG 164 (378)
T ss_pred chhHHHHHHhCCCC--CCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccC
Confidence 45689999997421 1111112346799999999999999999999999999999999999999988764 79999999
Q ss_pred cceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCCC-C
Q 016758 136 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPD-T 214 (383)
Q Consensus 136 ~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~ 214 (383)
+|+++..+++++|++++ +++|+.|+|+|+++. +.|+.|+|++++.+.++++|.||||+++|++|+|+|+|++.++ .
T Consensus 165 ~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 241 (378)
T PRK14278 165 RGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGG 241 (378)
T ss_pred ceEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCC
Confidence 99999999999999875 669999999999986 7899999999999999999999999999999999999999764 5
Q ss_pred CcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCC
Q 016758 215 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 294 (383)
Q Consensus 215 ~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~ 294 (383)
.+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|||++.+.|+||++ ++||++++|+|+|||..+ .
T Consensus 242 ~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p~~~-~ 318 (378)
T PRK14278 242 PAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMPHLR-S 318 (378)
T ss_pred CCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCCCCC-C
Confidence 6799999999999999999999999999999999999999999999887899999998 799999999999999764 3
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 295 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 295 ~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
..+|||||+|+|.||+.||++|+++|+++++.
T Consensus 319 ~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~ 350 (378)
T PRK14278 319 GGRGDLHAHVEVVVPTRLDHEDIELLRELKAL 350 (378)
T ss_pred CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999999999964
No 12
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-74 Score=577.36 Aligned_cols=317 Identities=31% Similarity=0.616 Sum_probs=279.5
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccC-cCCC----C
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEG-MGGG----G 53 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g-~~~~----~ 53 (383)
+||||+++||++||| +|++|++||||||||+||++||+||+++++.+ ++++ +
T Consensus 9 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~ 88 (386)
T PRK14277 9 EILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQG 88 (386)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccCCcCCC
Confidence 689999999999999 89999999999999999999999999877532 1000 0
Q ss_pred C---------CCCccchhhcccCCCCCCCCCC-CCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcc
Q 016758 54 G---------AHDPFDIFQSFFGGSPFGGGSS-RGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSK 123 (383)
Q Consensus 54 ~---------~~~~~d~F~~~Fgg~~f~~~~~-~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~ 123 (383)
+ +.++.|+|++||++. |++++. +..++.++.|+.+.|.|||||+|+|+++++.++|.+.|+.|+|+|..
T Consensus 89 g~~~~~~~~~~~~~~d~f~~~F~~~-fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~ 167 (386)
T PRK14277 89 GFGGGGFDFDFGGFGDIFEDIFGDF-FGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAK 167 (386)
T ss_pred CccccCccccccchhHHHHHhhccc-ccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcC
Confidence 1 022347788888632 222111 12234689999999999999999999999999999999999999998
Q ss_pred cCce-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEE
Q 016758 124 SGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 202 (383)
Q Consensus 124 ~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 202 (383)
.+.. .+|+.|+|+|+++..++++||++++. ++|+.|+|+|+++. +.|+.|+|++++.+.++++|.||||+++|++|
T Consensus 168 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 244 (386)
T PRK14277 168 PGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMI 244 (386)
T ss_pred CCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCCCccCCcEE
Confidence 7654 79999999999999999999998876 69999999999986 78999999999999999999999999999999
Q ss_pred EecCCcCCC-CCCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEE
Q 016758 203 TFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFK 281 (383)
Q Consensus 203 ~~~g~G~~~-~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~ 281 (383)
+|+|+|++. .+..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|.||++ +++|+++
T Consensus 245 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~ 321 (386)
T PRK14277 245 TLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQTGTKF 321 (386)
T ss_pred EEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC--CCCCCEE
Confidence 999999984 4567899999999999999999999999999999999999999999999998 79999998 7999999
Q ss_pred EEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 282 AINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 282 ~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
+|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 322 ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~ 365 (386)
T PRK14277 322 RLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKL 365 (386)
T ss_pred EECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 999999997643 36899999999999999999999999999853
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-74 Score=573.71 Aligned_cols=318 Identities=32% Similarity=0.624 Sum_probs=281.5
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC---CCCCC
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG---GGGGA 55 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~---~~~~~ 55 (383)
+||||+++||++||| +|++|++||||||||+||++||+||+++++++.+ ++.++
T Consensus 8 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~~~~~ 87 (380)
T PRK14297 8 EVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGFGG 87 (380)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCCCCCC
Confidence 689999999999999 8999999999999999999999999988753211 11011
Q ss_pred ------CCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-e
Q 016758 56 ------HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-M 128 (383)
Q Consensus 56 ------~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~ 128 (383)
.++.|+|++|||++ +++.+++...++++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+.. .
T Consensus 88 ~~~~~~~~~~d~f~~~fgg~-~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 166 (380)
T PRK14297 88 FDFSDMGGFGDIFDSFFGGG-FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPK 166 (380)
T ss_pred cCcccccchhHHHHHHhccC-ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCc
Confidence 13558999999842 211111223346799999999999999999999999999999999999999987764 7
Q ss_pred eCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCc
Q 016758 129 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEA 208 (383)
Q Consensus 129 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G 208 (383)
+|+.|+|+|+++..++++||+++ ++.+|+.|+|+|.++. +.|..|+|++++.+.++++|+||||+++|++|+|+|+|
T Consensus 167 ~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G 243 (380)
T PRK14297 167 TCDKCGGTGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQG 243 (380)
T ss_pred cCCCccCeEEEEEEEEcCCceeE-EEEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCc
Confidence 89999999999999999999875 5889999999999985 88999999999999999999999999999999999999
Q ss_pred CCCC-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCC
Q 016758 209 DEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEG 287 (383)
Q Consensus 209 ~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~G 287 (383)
++.+ +..+|||||+|.+++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|+|
T Consensus 244 ~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~ri~g~G 320 (380)
T PRK14297 244 EHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFRLKGKG 320 (380)
T ss_pred cCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEEEcCCC
Confidence 9854 567899999999999999999999999999999999999999999999997 78999998 7999999999999
Q ss_pred CCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCCC
Q 016758 288 MPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPR 327 (383)
Q Consensus 288 mp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~~ 327 (383)
||..+ ...+|||||+|+|.||+.|+++|+++|+++|+..
T Consensus 321 ~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 321 VPRVN-STGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred cCCCC-CCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 99764 3468999999999999999999999999999743
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-73 Score=565.83 Aligned_cols=317 Identities=29% Similarity=0.578 Sum_probs=279.3
Q ss_pred cccCCCCCCCHHHHH------------------------HHHHHHHHHHhcCCccccchhcccCchhhccCc---CCCCC
Q 016758 2 RFSESRKNASQDDLK------------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGM---GGGGG 54 (383)
Q Consensus 2 ~iLGV~~~As~~EIK------------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~---~~~~~ 54 (383)
+||||+++||++||| +|++|++||||||||+||++||+||++++..+. +++++
T Consensus 8 ~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~~~g~ 87 (369)
T PRK14282 8 EILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGGG 87 (369)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCCCCCc
Confidence 689999999999999 899999999999999999999999988764211 11111
Q ss_pred C-C-------Cc--cchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCccc
Q 016758 55 A-H-------DP--FDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKS 124 (383)
Q Consensus 55 ~-~-------~~--~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 124 (383)
+ . ++ .|+|++|||+++ ++.++...+.++.|+.+.|.|||+|+|+|+++++.++|.++|+.|+|+|+..
T Consensus 88 ~~~~~~~~~~~~~~~d~f~~~fgg~~--~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 165 (369)
T PRK14282 88 FFEDIFKDFENIFNRDIFDIFFGERR--TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEP 165 (369)
T ss_pred ccccccccccccccchhhhHhhcccC--CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCC
Confidence 1 1 11 278888887421 1111123346799999999999999999999999999999999999999987
Q ss_pred Cce-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEE
Q 016758 125 GAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKIT 203 (383)
Q Consensus 125 ~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~ 203 (383)
+.. .+|+.|+|+|+++..++++|||+++ +++|+.|+|+|+++. +.|+.|+|++++.+.++++|+||||+++|++|+
T Consensus 166 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 242 (369)
T PRK14282 166 GSGYVTCPKCHGTGRIREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLR 242 (369)
T ss_pred CCCCcCCCCCCCcCEEEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEE
Confidence 764 7999999999999999999999875 679999999999975 889999999999999999999999999999999
Q ss_pred ecCCcCCCC-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEE
Q 016758 204 FPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKA 282 (383)
Q Consensus 204 ~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~ 282 (383)
|+|+|++.+ +..+|||||+|.+++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+||+| +++|++++
T Consensus 243 ~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~g~~ir 320 (369)
T PRK14282 243 ITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQPETVFR 320 (369)
T ss_pred EecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCCCCEEE
Confidence 999999854 567899999999999999999999999999999999999999999999999899999998 79999999
Q ss_pred EcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 283 INDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 283 i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
|+|+|||..+ ...+|||||+|+|.+|+.|+++++++|++++..
T Consensus 321 i~GkG~p~~~-~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~ 363 (369)
T PRK14282 321 LKGKGLPNMR-YGRRGDLIVNVHVEIPKRLSREERKLLKELAKK 363 (369)
T ss_pred ECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999753 345899999999999999999999999999864
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-73 Score=564.37 Aligned_cols=314 Identities=33% Similarity=0.636 Sum_probs=277.7
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC--C---CC
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--G---GG 53 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~--~---~~ 53 (383)
+||||+++||.+||| +|++|++||||||||+||+.||+||++++.++.+ + +.
T Consensus 7 ~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~~~g~ 86 (365)
T PRK14285 7 EILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGGF 86 (365)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccccCCCc
Confidence 689999999999999 8999999999999999999999999988764311 1 10
Q ss_pred C-----CCCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-
Q 016758 54 G-----AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS- 127 (383)
Q Consensus 54 ~-----~~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~- 127 (383)
. +.++.|+|++|||++. ++.+.+.+.++.|+.++|.|||||+|+|+++++.++|.+.|+.|+|+|...+..
T Consensus 87 ~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 163 (365)
T PRK14285 87 SGFSDIFEDFGDIFDSFFTGNR---GQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSP 163 (365)
T ss_pred cccccccccHHHHHHHhhcCCc---CCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCC
Confidence 1 1235588999997421 111112346799999999999999999999999999999999999999987764
Q ss_pred eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCC
Q 016758 128 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 207 (383)
Q Consensus 128 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~ 207 (383)
.+|+.|+|+|+++. ++||+ |++++|+.|.|+|+++. +.|+.|+|++++.+.++++|+||||+++|++|+|+|+
T Consensus 164 ~~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~ 236 (365)
T PRK14285 164 SICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGK 236 (365)
T ss_pred ccCCCccCceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeec
Confidence 78999999998763 67888 78999999999999986 8899999999999999999999999999999999999
Q ss_pred cCCCCC-CCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCC
Q 016758 208 ADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDE 286 (383)
Q Consensus 208 G~~~~~-~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~ 286 (383)
|++.++ ..+|||||+|++++|+.|+|+|+|||++++|||.|||+|+++.|+||||+.|.|.||+| +++|++++|+|+
T Consensus 237 G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~irl~Gk 314 (365)
T PRK14285 237 GSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQIIIKNE 314 (365)
T ss_pred cccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEEEECCC
Confidence 999764 56899999999999999999999999999999999999999999999999999999998 799999999999
Q ss_pred CCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCCCC
Q 016758 287 GMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 328 (383)
Q Consensus 287 Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~~~ 328 (383)
|||..+. ..+|||||+|+|.+|+.|+++|+++|++++...+
T Consensus 315 G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~ 355 (365)
T PRK14285 315 GMPILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELK 355 (365)
T ss_pred CccCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9997643 3579999999999999999999999999986544
No 16
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.9e-73 Score=566.37 Aligned_cols=318 Identities=32% Similarity=0.629 Sum_probs=278.5
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCc--CC--C--
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--GG--G-- 52 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~--~~--~-- 52 (383)
+||||+++||.+||| +|++|++||||||||+||+.||+||+++++++. ++ +
T Consensus 7 ~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~~~~~ 86 (397)
T PRK14281 7 EVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGYG 86 (397)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCCCCCC
Confidence 699999999999999 899999999999999999999999998875321 01 1
Q ss_pred CCCCCccchh---hcccCCCC-C------------CCCCCCC--ccccCCcceeeeEEEehhhhcccceeeecceeeeeC
Q 016758 53 GGAHDPFDIF---QSFFGGSP-F------------GGGSSRG--RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVIC 114 (383)
Q Consensus 53 ~~~~~~~d~F---~~~Fgg~~-f------------~~~~~~~--~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C 114 (383)
+++.++.|+| ++|||+++ + +++..+. ..+.++.|+.+.|.|||||+|+|+++++.+++.+.|
T Consensus 87 ~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C 166 (397)
T PRK14281 87 GGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPC 166 (397)
T ss_pred cCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecC
Confidence 0122344555 57887421 1 1110111 123478999999999999999999999999999999
Q ss_pred CCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEecc
Q 016758 115 TKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 194 (383)
Q Consensus 115 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 194 (383)
+.|+|+|+..+...+|+.|+|+|+++..+++++|++++ +++|+.|+|+|.++. +.|+.|+|++++.+.++++|+|||
T Consensus 167 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~ 243 (397)
T PRK14281 167 KECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCGGEGRVVK--DRCPACYGEGIKQGEVTVKVTVPA 243 (397)
T ss_pred CCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCcceeeeeC--CCCCCCCCCccEecceEEEEecCC
Confidence 99999999887668999999999999999999999875 679999999999985 789999999999999999999999
Q ss_pred CcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCC
Q 016758 195 GMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGE 273 (383)
Q Consensus 195 G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~ 273 (383)
|+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++
T Consensus 244 G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g- 321 (397)
T PRK14281 244 GVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAG- 321 (397)
T ss_pred CCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCCc-
Confidence 999999999999999965 568999999999999999999999999999999999999999999999998 78999998
Q ss_pred cccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 274 VVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 274 vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
++||++++|+|+|||..+ ...+|||||+|+|.||+.||++|+++|++|+..
T Consensus 322 -~~~G~~~ri~g~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 322 -TQPETMLRIPGKGIGHLR-GSGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred -cCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 799999999999999764 346899999999999999999999999999963
No 17
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-72 Score=563.58 Aligned_cols=310 Identities=31% Similarity=0.586 Sum_probs=266.5
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC-------C
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-------G 51 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~-------~ 51 (383)
+||||+++||.+||| +|++|++||||||||+||++||+||+++..++.. +
T Consensus 13 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~~~~~ 92 (392)
T PRK14279 13 KELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRFDGGG 92 (392)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccccCCC
Confidence 699999999999999 9999999999999999999999999753321110 0
Q ss_pred C-CC--------CCCc---------------cchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeec
Q 016758 52 G-GG--------AHDP---------------FDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLS 107 (383)
Q Consensus 52 ~-~~--------~~~~---------------~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~ 107 (383)
+ ++ ..++ .|+|+.||+++ +++.+..+++++.|+.+.|.|||||+|+|+++++.
T Consensus 93 ~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~---~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~ 169 (392)
T PRK14279 93 GFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRG---GGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLR 169 (392)
T ss_pred CCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCC---CcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEe
Confidence 0 00 1122 24455555421 11112234567899999999999999999999999
Q ss_pred ceeeeeCCCCCCCCcccCce-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcE
Q 016758 108 LSRNVICTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKK 186 (383)
Q Consensus 108 ~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~ 186 (383)
+++.+.|++|+|+|+..+.. .+|+.|+|+|+++..+ | ++ +++++|+.|+|+|+++. +.|+.|+|.+++.+.+
T Consensus 170 ~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~i~--~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 170 LTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--G--AF-GFSEPCTDCRGTGSIIE--DPCEECKGTGVTTRTR 242 (392)
T ss_pred eeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--c--ce-EEEEecCCCCceeEEeC--CcCCCCCCCeEEEEee
Confidence 99999999999999988754 7999999999876543 3 44 56799999999999986 8899999999999999
Q ss_pred EEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEE
Q 016758 187 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQL 265 (383)
Q Consensus 187 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l 265 (383)
+++|.||||+++|++|+|+|+|++.+ +..+|||||+|.+++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i 321 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-V 321 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce-E
Confidence 99999999999999999999999865 456799999999999999999999999999999999999999999999998 7
Q ss_pred EEEcCCCCcccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 266 LIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 266 ~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
.|+||+| +++|++++|+|+|||.. ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 322 ~v~Ip~g--~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~ 378 (392)
T PRK14279 322 GVKVPAG--TADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEA 378 (392)
T ss_pred EEEECCC--CCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 8999998 79999999999999963 346899999999999999999999999999963
No 18
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-72 Score=563.98 Aligned_cols=313 Identities=31% Similarity=0.599 Sum_probs=272.1
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC--CCCCC-
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GGGGA- 55 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~--~~~~~- 55 (383)
+||||+++||++||| +|++|++||||||||+||++||+||++++.++.+ +++++
T Consensus 5 ~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~~g~~ 84 (391)
T PRK14284 5 TILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGGAGMG 84 (391)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCCCCcC
Confidence 689999999999999 8999999999999999999999999987643211 11111
Q ss_pred -----------------CCccchhhcccCCCC--CCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCC
Q 016758 56 -----------------HDPFDIFQSFFGGSP--FGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTK 116 (383)
Q Consensus 56 -----------------~~~~d~F~~~Fgg~~--f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~ 116 (383)
..+.|+|++||++++ |++ +..+.++.++.|+.+.|.|||||+|+|+++++.+++.+.|++
T Consensus 85 ~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~ 163 (391)
T PRK14284 85 NMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDA 163 (391)
T ss_pred cccchhhhccccccccccccccchhhhccCccccccc-cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCC
Confidence 011477888887421 111 111223467899999999999999999999999999999999
Q ss_pred CCCCCcccCce-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccC
Q 016758 117 CKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKG 195 (383)
Q Consensus 117 C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G 195 (383)
|+|+|+..+.. .+|+.|+|+|+++..+ ||+ +++++|+.|+|+|+++. +.|+.|+|.+++.+.++|+|+||||
T Consensus 164 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G 236 (391)
T PRK14284 164 CSGSGANSSQGIKVCDRCKGSGQVVQSR----GFF-SMASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHIPAG 236 (391)
T ss_pred CcccccCCCCCCeecCccCCeeEEEEEe----ceE-EEEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEEECCC
Confidence 99999987764 7999999999877543 455 47889999999999986 8899999999999999999999999
Q ss_pred cccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccC-CCEEEEEcCCCC
Q 016758 196 MQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLD-GRQLLIKSQPGE 273 (383)
Q Consensus 196 ~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tld-G~~l~i~ip~g~ 273 (383)
+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||| |+.+.|+||++
T Consensus 237 ~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g- 315 (391)
T PRK14284 237 VDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG- 315 (391)
T ss_pred CCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCc-
Confidence 99999999999999976 5678999999999999999999999999999999999999999999999 67899999998
Q ss_pred cccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 016758 274 VVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325 (383)
Q Consensus 274 vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp 325 (383)
+++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++++.
T Consensus 316 -~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~ 365 (391)
T PRK14284 316 -IQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAA 365 (391)
T ss_pred -cCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999997643 3689999999999999999999999999985
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.8e-72 Score=557.75 Aligned_cols=317 Identities=35% Similarity=0.654 Sum_probs=281.4
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCC-CC-----
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GG----- 53 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~-~~----- 53 (383)
+||||+++||.+||| +|++|++||+|||||.||+.||+||+++++++.++ ++
T Consensus 4 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~~~~ 83 (354)
T TIGR02349 4 EILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGF 83 (354)
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCcCCc
Confidence 689999999999999 89999999999999999999999999887642111 11
Q ss_pred ---CCCCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-ee
Q 016758 54 ---GAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MK 129 (383)
Q Consensus 54 ---~~~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~ 129 (383)
++.++.|+|++|||++ ++++..+...++++.|+.+.|.|||||+|+|+++++.++|.+.|+.|+|+|+..... .+
T Consensus 84 ~~~~~~~~~~~f~~~fg~~-~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~ 162 (354)
T TIGR02349 84 DIGFFGDFGDIFGDFFGGG-GGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKT 162 (354)
T ss_pred cccCcCchhhhHHHHhccC-cccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCcc
Confidence 1224558999999842 111111123456889999999999999999999999999999999999999987764 78
Q ss_pred CCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcC
Q 016758 130 CSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEAD 209 (383)
Q Consensus 130 C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 209 (383)
|+.|+|+|+++..+++||||+++ +++|+.|.|+|+++. +.|+.|+|++++.+.+.++|+||||+++|++|+|+|+|+
T Consensus 163 C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 239 (354)
T TIGR02349 163 CPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGN 239 (354)
T ss_pred CCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCcc
Confidence 99999999999999999999987 679999999999986 789999999999999999999999999999999999999
Q ss_pred CC-CCCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCC
Q 016758 210 EA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGM 288 (383)
Q Consensus 210 ~~-~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gm 288 (383)
+. .+..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|||| .+.|.+|++ +++|++++|+|+||
T Consensus 240 ~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g~G~ 316 (354)
T TIGR02349 240 AGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVFRLKGKGV 316 (354)
T ss_pred CCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEEEECCCCc
Confidence 84 456789999999999999999999999999999999999999999999999 589999998 79999999999999
Q ss_pred CCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 289 PMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 289 p~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
|..+. ..+|||||+|+|.||+.|+++|+++|+++|+.
T Consensus 317 p~~~~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 317 PRLRG-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 97643 36899999999999999999999999999853
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.7e-72 Score=555.03 Aligned_cols=312 Identities=31% Similarity=0.583 Sum_probs=272.4
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC-CCC-C--
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GGG-G-- 54 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~-~~~-~-- 54 (383)
+||||+++||.+||| +|++|++||||||||.||+.||+||+++++++.+ ++. +
T Consensus 8 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~~~~~ 87 (373)
T PRK14301 8 EVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFSSAE 87 (373)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCccccc
Confidence 689999999999999 9999999999999999999999999988764211 110 1
Q ss_pred --CCCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeCC
Q 016758 55 --AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCS 131 (383)
Q Consensus 55 --~~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~ 131 (383)
+.++.|+|++|||+++. ++.+..++.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...... .+|+
T Consensus 88 ~~~~~f~d~f~~~fg~g~~--~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 165 (373)
T PRK14301 88 DIFSHFSDIFGDLFGFSGG--GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCR 165 (373)
T ss_pred ccccchHHHHHHHhhccCc--ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccC
Confidence 11234778888863211 111223456899999999999999999999999999999999999999987764 7899
Q ss_pred CCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCC
Q 016758 132 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 211 (383)
Q Consensus 132 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 211 (383)
.|+|+|++... . ||+ |++.+|+.|+|+|+++. +.|+.|+|++++.+.++++|+||||+++|++|+|+|+|++.
T Consensus 166 ~C~G~G~v~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 238 (373)
T PRK14301 166 HCGGSGQVRQS--Q--GFF-QIAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG 238 (373)
T ss_pred CccCeeEEEEE--e--eeE-EEEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCC
Confidence 99999987643 3 455 45999999999999986 88999999999999999999999999999999999999985
Q ss_pred C-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCC
Q 016758 212 P-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 290 (383)
Q Consensus 212 ~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~ 290 (383)
+ +..+|||||+|.+++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++ ++||++++|+|+|||.
T Consensus 239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p~ 315 (373)
T PRK14301 239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRGKGLPY 315 (373)
T ss_pred CCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcCCCCCC
Confidence 4 567899999999999999999999999999999999999999999999998 89999998 7999999999999998
Q ss_pred CCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 291 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 291 ~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
.+ ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 316 ~~-~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~ 350 (373)
T PRK14301 316 LG-SSQKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350 (373)
T ss_pred CC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 64 346899999999999999999999999999853
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-71 Score=550.46 Aligned_cols=312 Identities=29% Similarity=0.536 Sum_probs=272.9
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCC-CCC--
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG-GGA-- 55 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~-~~~-- 55 (383)
+||||+++||.+||| +|++|++||||||||+||++||+||+++++++..++ +++
T Consensus 8 ~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~~~~~~ 87 (366)
T PRK14294 8 EILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFSGFDD 87 (366)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCcCcccc
Confidence 589999999999999 899999999999999999999999998876421111 111
Q ss_pred --CCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeCCC
Q 016758 56 --HDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSG 132 (383)
Q Consensus 56 --~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~ 132 (383)
.++.|+|++|||.+++ ++++....+.++.|+.+.|.|||||+|+|+++++.+.+.+.|+.|+|+|...... .+|+.
T Consensus 88 ~~~~~~d~f~~~fg~g~~-~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 166 (366)
T PRK14294 88 IFSSFGDIFEDFFGFGGG-RRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQ 166 (366)
T ss_pred chhhhhhhHHHhhccCCC-cCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCC
Confidence 2345889999972111 1111112346789999999999999999999999999999999999999987764 78999
Q ss_pred CcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCC-
Q 016758 133 CQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA- 211 (383)
Q Consensus 133 C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~- 211 (383)
|+|+|+++.. + ||+ |++++|+.|+|+|+++. +.|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.
T Consensus 167 C~G~G~~~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 239 (366)
T PRK14294 167 CGGSGQVTQS--Q--GFF-SIRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGV 239 (366)
T ss_pred cCCeEEEEEE--e--eeE-EEEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCC
Confidence 9999987643 3 566 47899999999999976 88999999999999999999999999999999999999985
Q ss_pred CCCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCC
Q 016758 212 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMY 291 (383)
Q Consensus 212 ~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~ 291 (383)
++..+|||||+|.+++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|.||+| +++|++++|+|+|||..
T Consensus 240 ~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G~G~p~~ 316 (366)
T PRK14294 240 RGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKGKGIPSL 316 (366)
T ss_pred CCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECCCCCCCC
Confidence 4678999999999999999999999999999999999999999999999998 58999998 79999999999999976
Q ss_pred CCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 016758 292 QRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325 (383)
Q Consensus 292 ~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp 325 (383)
+. ..+|||||+|+|.+|+.|+++++++|++++.
T Consensus 317 ~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 349 (366)
T PRK14294 317 RG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFAR 349 (366)
T ss_pred CC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 43 3689999999999999999999999999995
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.7e-71 Score=552.27 Aligned_cols=308 Identities=31% Similarity=0.606 Sum_probs=268.2
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcc----cCchhhccCcC-C-C
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQ----YGEDALKEGMG-G-G 52 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~----~G~~~~~~g~~-~-~ 52 (383)
+||||+++||++||| +|++|++||||||||+||++||+ ||++++..+.+ + +
T Consensus 13 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~~~~~~ 92 (389)
T PRK14295 13 KVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGPGGGGG 92 (389)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCCCCCCC
Confidence 689999999999999 99999999999999999999999 99888753211 0 0
Q ss_pred CCC-CC--------------------ccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceee
Q 016758 53 GGA-HD--------------------PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRN 111 (383)
Q Consensus 53 ~~~-~~--------------------~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~ 111 (383)
+++ ++ +.|+|+.|||+ ++ +.++++++.|+.+.|.|||||+|+|++++|.+++.
T Consensus 93 ~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~-----~~-~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~ 166 (389)
T PRK14295 93 GGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR-----GG-RRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ 166 (389)
T ss_pred CCCCcccccccccccccccccccccchhhhhcccccC-----CC-CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence 110 11 12344444432 11 12334678999999999999999999999999999
Q ss_pred eeCCCCCCCCcccCce-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEE
Q 016758 112 VICTKCKGKGSKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEV 190 (383)
Q Consensus 112 ~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V 190 (383)
+.|++|+|+|...+.. .+|+.|+|+|+++..+ | ++ +++.+|+.|+|+|+++. +.|..|+|++++.+.++++|
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V 239 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--G--GF-SLSEPCPDCKGRGLIAD--DPCLVCKGSGRAKSSRTMQV 239 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--c--ce-EEEEecCCCcceeEEec--cCCCCCCCCceEeeeeEEEE
Confidence 9999999999998764 7999999999887554 3 33 46789999999999986 88999999999999999999
Q ss_pred EeccCcccCCEEEecCCcCCC-CCCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEc
Q 016758 191 IVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKS 269 (383)
Q Consensus 191 ~Ip~G~~~G~~i~~~g~G~~~-~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~i 269 (383)
.||+|+++|++|+|+|+|++. ++..+|||||+|.+++|+.|+|+|+||+++++|||.+||+|+++.|+||||+.+.|+|
T Consensus 240 ~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~i 319 (389)
T PRK14295 240 RIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKL 319 (389)
T ss_pred EeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEE
Confidence 999999999999999999985 4667899999999999999999999999999999999999999999999999899999
Q ss_pred CCCCcccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 270 QPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 270 p~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
|+| +++|++++|+|+|||.. .+.+|||||+|+|.||+.|+++|+++|++++..
T Consensus 320 p~g--~~~g~~iri~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~ 372 (389)
T PRK14295 320 PPG--TPNGRVLRVRGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAREALEAFREA 372 (389)
T ss_pred CCc--cCCCcEEEECCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 998 79999999999999964 345899999999999999999999999999863
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.9e-71 Score=546.90 Aligned_cols=318 Identities=31% Similarity=0.604 Sum_probs=277.1
Q ss_pred cccCCCCCCCHHHHH------------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCC-C-C--
Q 016758 2 RFSESRKNASQDDLK------------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G-G-- 53 (383)
Q Consensus 2 ~iLGV~~~As~~EIK------------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~-~-~-- 53 (383)
+||||+++||.+||| +|++|++||||||||.||++||+||+.+++++.++ + +
T Consensus 7 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~~~~~ 86 (365)
T PRK14290 7 KILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFNWDNF 86 (365)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcccccc
Confidence 689999999999999 89999999999999999999999999877532111 0 0
Q ss_pred -CCCCccchhhcccCCCCCC----CC-CCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce
Q 016758 54 -GAHDPFDIFQSFFGGSPFG----GG-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS 127 (383)
Q Consensus 54 -~~~~~~d~F~~~Fgg~~f~----~~-~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 127 (383)
++.++.|+|+.|||++ ++ ++ +..++.++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|......
T Consensus 87 ~~~~~~~d~f~~~fg~~-~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~ 165 (365)
T PRK14290 87 THFSDINDIFNQIFGGN-FGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKL 165 (365)
T ss_pred ccccchhHHHHHHhcCc-cccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCC
Confidence 1235678999999842 11 11 11111223578999999999999999999999999999999999999988766
Q ss_pred eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCC
Q 016758 128 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGE 207 (383)
Q Consensus 128 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~ 207 (383)
.+|+.|+|+|+++..++.|+ +.+|++.+|+.|.|+|+++. +.|+.|+|++++.+.++++|.||||+.+|++|+|+|+
T Consensus 166 ~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~ 242 (365)
T PRK14290 166 ITCPTCHGTGQQRIVRGQGF-FRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGK 242 (365)
T ss_pred ccCCCCCCcCEEEEEeccCe-EEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccc
Confidence 89999999999877765443 34667899999999999975 8999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCC
Q 016758 208 ADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEG 287 (383)
Q Consensus 208 G~~~~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~G 287 (383)
|++ ++..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|++|+ +.|.||++ +++|++++|+|+|
T Consensus 243 G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~g~G 318 (365)
T PRK14290 243 GQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIKGAG 318 (365)
T ss_pred cCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEECCCC
Confidence 986 6788999999999999999999999999999999999999999999999996 89999988 7999999999999
Q ss_pred CCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCCCC
Q 016758 288 MPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRT 328 (383)
Q Consensus 288 mp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~~~ 328 (383)
||..+. ..+|||||+|+|.+|+.|+++++++|+++|+.+.
T Consensus 319 ~p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~ 358 (365)
T PRK14290 319 MPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKE 358 (365)
T ss_pred CCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 997543 3589999999999999999999999999997543
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-70 Score=546.60 Aligned_cols=309 Identities=36% Similarity=0.682 Sum_probs=271.1
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC-CC-C---
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG-G--- 53 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~-~~-~--- 53 (383)
+||||+++||.+||| +|++|++||||||||++|+.||+||++++..+.+ ++ +
T Consensus 8 ~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~~~~ 87 (371)
T PRK10767 8 EVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGGGG 87 (371)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCCCCcc
Confidence 689999999999999 8999999999999999999999999988753211 11 1
Q ss_pred CCCC-ccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeCC
Q 016758 54 GAHD-PFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCS 131 (383)
Q Consensus 54 ~~~~-~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~ 131 (383)
++.+ +.|+|+.|||+++ +.+.+.++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...+.. ..|+
T Consensus 88 ~~~~~f~~~f~~~fgg~~----~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~ 163 (371)
T PRK10767 88 GFGDIFGDIFGDIFGGGR----GGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCP 163 (371)
T ss_pred ccccchhhhhhhhccCCc----cccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCC
Confidence 1113 3467777776311 11123356899999999999999999999999999999999999999987764 7899
Q ss_pred CCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCC
Q 016758 132 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 211 (383)
Q Consensus 132 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 211 (383)
.|+|+|+++..+ ||++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++.
T Consensus 164 ~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 236 (371)
T PRK10767 164 TCHGAGQVRMQQ----GFFT-VQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAG 236 (371)
T ss_pred CCCCeeEEEEee----ceEE-EEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCC
Confidence 999999876543 5664 7889999999999975 88999999999999999999999999999999999999984
Q ss_pred -CCCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCC
Q 016758 212 -PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 290 (383)
Q Consensus 212 -~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~ 290 (383)
++..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|.||++ +++|++++|+|+|||.
T Consensus 237 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~-i~v~ip~g--~~~g~~~~i~g~G~p~ 313 (371)
T PRK10767 237 ERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGR-VKLKIPEG--TQTGKLFRLRGKGVKS 313 (371)
T ss_pred CCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCc-EEEEeCCC--CCCCCEEEECCCCcCC
Confidence 5678999999999999999999999999999999999999999999999995 89999998 7999999999999997
Q ss_pred CCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 016758 291 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325 (383)
Q Consensus 291 ~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp 325 (383)
.+. ..+|||||+|+|.||+.|+++++++|++++.
T Consensus 314 ~~~-~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~ 347 (371)
T PRK10767 314 VRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEE 347 (371)
T ss_pred CCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 643 4689999999999999999999999999996
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-70 Score=545.06 Aligned_cols=313 Identities=31% Similarity=0.613 Sum_probs=271.4
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCc--C--CC-CC
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--G--GG-GG 54 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~--~--~~-~~ 54 (383)
+||||+++||.+||| +|++|++|||||+|+.||+.||+||++++..+. + ++ ++
T Consensus 7 ~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g~~~~ 86 (372)
T PRK14300 7 QILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHGG 86 (372)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCCCCCc
Confidence 699999999999998 899999999999999999999999998875321 1 11 11
Q ss_pred C-CCccchhhcccCCCCCCCCC-CCC-ccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeC
Q 016758 55 A-HDPFDIFQSFFGGSPFGGGS-SRG-RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKC 130 (383)
Q Consensus 55 ~-~~~~d~F~~~Fgg~~f~~~~-~~~-~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C 130 (383)
+ .++.++|+.||++. |++++ .++ ..+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+.. .+|
T Consensus 87 ~~~~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C 165 (372)
T PRK14300 87 FHPDINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTC 165 (372)
T ss_pred cccchhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccC
Confidence 1 13345566666421 11111 111 1235789999999999999999999999999999999999999988764 799
Q ss_pred CCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCC
Q 016758 131 SGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADE 210 (383)
Q Consensus 131 ~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 210 (383)
+.|+|+|+++.. +||++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++
T Consensus 166 ~~C~G~G~~~~~----~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~ 238 (372)
T PRK14300 166 DACSGVGATRMQ----QGFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEA 238 (372)
T ss_pred CCccCeEEEEEe----eceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccC
Confidence 999999987642 35665 7889999999999985 8899999999999999999999999999999999999998
Q ss_pred C-CCCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCC
Q 016758 211 A-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMP 289 (383)
Q Consensus 211 ~-~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp 289 (383)
. ++..+|||||+|.+++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.+.|.||+| +++|++++|+|+|||
T Consensus 239 ~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g~G~p 316 (372)
T PRK14300 239 GIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRSKGMS 316 (372)
T ss_pred CCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECCCCCC
Confidence 5 5678999999999999999999999999999999999999999999999998899999998 799999999999999
Q ss_pred CCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 016758 290 MYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325 (383)
Q Consensus 290 ~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp 325 (383)
..+ ...+|||||+|+|.||+.||++|+++|++++.
T Consensus 317 ~~~-~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~ 351 (372)
T PRK14300 317 KMR-STIRGDMLTHIHVEVPKNLSKRQRELLEEFKK 351 (372)
T ss_pred CCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 753 23689999999999999999999999999995
No 26
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-70 Score=544.84 Aligned_cols=319 Identities=31% Similarity=0.602 Sum_probs=280.8
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC--CCCCCCC
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GGGGAHD 57 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~--~~~~~~~ 57 (383)
+||||+++||.+||| +|++|++||+|||||.||++||+||++++.++.+ +.++..+
T Consensus 7 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~~~~~ 86 (374)
T PRK14293 7 EILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMGDMGG 86 (374)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCcccccc
Confidence 689999999999999 9999999999999999999999999987753211 1111223
Q ss_pred ccchhhcccCCCC-CCC-C-CCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeCCCC
Q 016758 58 PFDIFQSFFGGSP-FGG-G-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGC 133 (383)
Q Consensus 58 ~~d~F~~~Fgg~~-f~~-~-~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C 133 (383)
+.|+|++|||+.+ +++ + +.+.+++.++.|+.+.|.|||||+|+|+++++.+++.++|+.|+|+|...... .+|+.|
T Consensus 87 ~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 166 (374)
T PRK14293 87 FADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTC 166 (374)
T ss_pred hHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCC
Confidence 4588999997411 110 0 01122346789999999999999999999999999999999999999987664 789999
Q ss_pred cccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCC-C
Q 016758 134 QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA-P 212 (383)
Q Consensus 134 ~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~ 212 (383)
+|+|++...++++||++++ +.+|+.|.|+|+++. +.|++|+|++++.+.+.++|.||||+++|++|+|+|+|++. +
T Consensus 167 ~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~ 243 (374)
T PRK14293 167 GGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLR 243 (374)
T ss_pred CCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCC
Confidence 9999999999999999886 689999999999975 88999999999999999999999999999999999999985 4
Q ss_pred CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCC
Q 016758 213 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQ 292 (383)
Q Consensus 213 ~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~ 292 (383)
+..+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|.||++ +++|++++|+|+|||..+
T Consensus 244 ~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G~p~~~ 320 (374)
T PRK14293 244 GGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKGVPRLG 320 (374)
T ss_pred CCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCCCCCCC
Confidence 567899999999999999999999999999999999999999999999998 78899997 799999999999999875
Q ss_pred CCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 293 RPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 293 ~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
.++.+|||||+|+|.||+.|+++++++|++++..
T Consensus 321 ~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~ 354 (374)
T PRK14293 321 NPVARGDHLITVKVKIPTRISDEERELLEKLAKI 354 (374)
T ss_pred CCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5456899999999999999999999999999954
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-69 Score=540.46 Aligned_cols=310 Identities=28% Similarity=0.570 Sum_probs=272.5
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCC-CCCC--
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG-GGAH-- 56 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~-~~~~-- 56 (383)
++|||+++||.+||| +|++|++||||||||+||++||+||++++.+....+ ....
T Consensus 9 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~~~~~~~ 88 (378)
T PRK14283 9 EVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDIFNNINF 88 (378)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccccccccCc
Confidence 699999999999999 899999999999999999999999998765210000 0001
Q ss_pred ---------Cccchhhcc-cCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCc
Q 016758 57 ---------DPFDIFQSF-FGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA 126 (383)
Q Consensus 57 ---------~~~d~F~~~-Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 126 (383)
++.++|+.| ||+ + +...+.++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|+|...+.
T Consensus 89 ~~~~~~~~~~~~~~f~~~~fgg-----~--~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 161 (378)
T PRK14283 89 EDIFQGFGFGIGNIFDMFGFGG-----G--SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGS 161 (378)
T ss_pred cccccccccchhhhccccccCC-----C--CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCC
Confidence 122444444 331 1 12234678999999999999999999999999999999999999998766
Q ss_pred e-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEec
Q 016758 127 S-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 205 (383)
Q Consensus 127 ~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ 205 (383)
. .+|+.|+|+|+++..+++++|++++ +.+|+.|.|+|+.+. +.|..|+|++++.+.+.++|.||||+++|++|+|+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~ 238 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMN-VTTCPDCQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVS 238 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEE-EEECCCCCccceecC--CCCCCCCCceeeccceeEEEEECCCCCCCcEEEEe
Confidence 4 7899999999999999999999864 579999999999975 88999999999999999999999999999999999
Q ss_pred CCcCCCC-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEc
Q 016758 206 GEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAIN 284 (383)
Q Consensus 206 g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~ 284 (383)
|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|||| .+.|.||+| +++|++++|+
T Consensus 239 g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~~g~~~ri~ 315 (378)
T PRK14283 239 GEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQSGTTFRLK 315 (378)
T ss_pred ccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CCCCCEEEEC
Confidence 9999854 56799999999999999999999999999999999999999999999999 589999998 7999999999
Q ss_pred CCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 016758 285 DEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325 (383)
Q Consensus 285 g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp 325 (383)
|+|||... ...+|||||+|+|.||+.|+++|+++|++++.
T Consensus 316 g~G~p~~~-~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~ 355 (378)
T PRK14283 316 GHGMPSLR-WSGKGNLYVKVKVVVPKKLSPKQKELLREFAS 355 (378)
T ss_pred CCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 99999764 33689999999999999999999999999985
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-69 Score=539.64 Aligned_cols=315 Identities=32% Similarity=0.643 Sum_probs=270.3
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC--CC-C---
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GG-G--- 53 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~--~~-~--- 53 (383)
+||||+++||.+||| +|++|++||||||||+||++||+||++++..+.+ ++ .
T Consensus 7 ~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~~~~ 86 (382)
T PRK14291 7 EILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGFS 86 (382)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccccccccc
Confidence 689999999999999 8999999999999999999999999987653211 00 0
Q ss_pred --CCCCccchhhccc---C-CCCCCCC---CCC---CccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCC
Q 016758 54 --GAHDPFDIFQSFF---G-GSPFGGG---SSR---GRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKG 121 (383)
Q Consensus 54 --~~~~~~d~F~~~F---g-g~~f~~~---~~~---~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G 121 (383)
.+.++.|+|+.|| | ++.|++. +.+ ...+.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 87 ~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G 166 (382)
T PRK14291 87 DFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTG 166 (382)
T ss_pred cccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCcccc
Confidence 1234557787774 2 1112211 011 12345789999999999999999999999999999999999999
Q ss_pred cccCce-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCC
Q 016758 122 SKSGAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQ 200 (383)
Q Consensus 122 ~~~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~ 200 (383)
...+.. .+|+.|+|+|+++.. +++++++.+|+.|+|+|. + ++.|+.|+|.+++.+.++++|+||||+++|+
T Consensus 167 ~~~~~~~~~C~~C~G~G~~~~~-----~g~~~~~~~C~~C~G~G~-~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 238 (382)
T PRK14291 167 YDPGSGEKVCPTCGGSGEIYQR-----GGFFRISQTCPTCGGEGV-L--REPCSKCNGRGLVIKKETIKVRIPPGVDNGS 238 (382)
T ss_pred CCCCCCCccCCCCCCceEEEEe-----cceEEEEecCCCCCCceE-E--ccCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence 988764 789999999987654 144567899999999995 4 4789999999999999999999999999999
Q ss_pred EEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCc
Q 016758 201 KITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQ 279 (383)
Q Consensus 201 ~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~ 279 (383)
+|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.+.|.||+| +++|+
T Consensus 239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g--~~~G~ 316 (382)
T PRK14291 239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--TKEGD 316 (382)
T ss_pred EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCC
Confidence 999999999854 788999999999999999999999999999999999999999999999999899999998 79999
Q ss_pred EEEEcCCCCCCCCCCCCCCceEEEEEEeCCC--CCC------HHHHHHHHhhCCCC
Q 016758 280 FKAINDEGMPMYQRPFMRGKLYIHFTVDFPE--SLS------PDQCKMLETVLPPR 327 (383)
Q Consensus 280 ~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~--~l~------~~~~~~l~~~lp~~ 327 (383)
+++|+|+|||..+. ..+|||||+|+|.||+ .|+ ++|+++|++|+...
T Consensus 317 ~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~ 371 (382)
T PRK14291 317 KIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371 (382)
T ss_pred EEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence 99999999997643 3689999999999998 499 99999999887543
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-69 Score=537.43 Aligned_cols=315 Identities=30% Similarity=0.630 Sum_probs=278.1
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC-C--CCCCC
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-G--GGGAH 56 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~-~--~~~~~ 56 (383)
+||||+++||.+||| +|++|++||+|||||.+|++||+||++++.+..+ + ++.++
T Consensus 6 ~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~ 85 (371)
T PRK14292 6 ELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGGMGF 85 (371)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccCccCC
Confidence 689999999999999 8999999999999999999999999876421100 1 11124
Q ss_pred CccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCc--eeeCCCCc
Q 016758 57 DPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGA--SMKCSGCQ 134 (383)
Q Consensus 57 ~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~--~~~C~~C~ 134 (383)
|+.|+|++|||+++++++ ...+++.++.|+.+.+.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+.|+
T Consensus 86 d~~d~f~~~fg~~~~~~~-~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~ 164 (371)
T PRK14292 86 DPMDIFEQLFGGAGFGGG-RGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCR 164 (371)
T ss_pred ChHHHHHHhhCCCCcCCC-CCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCC
Confidence 667999999985322111 111234678999999999999999999999999999999999999998764 47899999
Q ss_pred ccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCCCC
Q 016758 135 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT 214 (383)
Q Consensus 135 G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 214 (383)
|+|++...+++.||++++ +.+|+.|+|+|..+. ..|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++.++.
T Consensus 165 G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~ 241 (371)
T PRK14292 165 GAGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG 241 (371)
T ss_pred CccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCC
Confidence 999999889999999865 789999999999975 89999999999999999999999999999999999999997665
Q ss_pred CcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCC
Q 016758 215 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 294 (383)
Q Consensus 215 ~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~ 294 (383)
. |||||+|.+++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+. .|.||+| +++|++++|+|+|||..++
T Consensus 242 ~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g~G~p~~~~- 316 (371)
T PRK14292 242 N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRGQGMPRLQG- 316 (371)
T ss_pred C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECCCCCCCCCC-
Confidence 5 999999999999999999999999999999999999999999999985 7899998 7999999999999997643
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 016758 295 FMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325 (383)
Q Consensus 295 ~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp 325 (383)
..+|||||+|+|.||+.|+++|+++|++++.
T Consensus 317 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 347 (371)
T PRK14292 317 AGTGDLIVEYEIAVPKQLSPEAREALEAYAR 347 (371)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999999999984
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8e-69 Score=536.81 Aligned_cols=318 Identities=32% Similarity=0.646 Sum_probs=276.5
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC-CC--CCC
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG--GGA 55 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~-~~--~~~ 55 (383)
++|||+++||.+||| +|++|++||||||||+||++||+||+++++++.+ ++ +++
T Consensus 9 ~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~~~~~~ 88 (386)
T PRK14289 9 EVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEG 88 (386)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence 589999999999999 8999999999999999999999999987753211 11 112
Q ss_pred CCccchhhcc---cCCC--CCCC----C-CCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccC
Q 016758 56 HDPFDIFQSF---FGGS--PFGG----G-SSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSG 125 (383)
Q Consensus 56 ~~~~d~F~~~---Fgg~--~f~~----~-~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 125 (383)
.++.++|+.| |++. ++++ + +.....+.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|....
T Consensus 89 ~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 168 (386)
T PRK14289 89 MSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGN 168 (386)
T ss_pred cChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCC
Confidence 2344554333 5421 1100 0 011123457899999999999999999999999999999999999999876
Q ss_pred ce-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEe
Q 016758 126 AS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 204 (383)
Q Consensus 126 ~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~ 204 (383)
.. .+|+.|+|+|+++..++++||++++ +.+|+.|+|+|+++. ..|+.|+|++++.+.++++|+||+|+++|++|+|
T Consensus 169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l 245 (386)
T PRK14289 169 NGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPTCNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSM 245 (386)
T ss_pred CCCCcCCCCcCeEEEEEEEecccceEEE-EEecCCCCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEE
Confidence 54 7899999999999999999999875 899999999999986 8899999999999999999999999999999999
Q ss_pred cCCcCCC-CCCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEE
Q 016758 205 PGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAI 283 (383)
Q Consensus 205 ~g~G~~~-~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i 283 (383)
+|+|++. ++..+|||+|+|.+++|+.|+|+++||++++.|+|.+||+|+++.|+||||+ +.|.||+| +++|++++|
T Consensus 246 ~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri 322 (386)
T PRK14289 246 NGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQPGKVLRL 322 (386)
T ss_pred eccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cCCCcEEEE
Confidence 9999985 4677999999999999999999999999999999999999999999999997 79999998 799999999
Q ss_pred cCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 284 NDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 284 ~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 323 ~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 323 RNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred CCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 9999997543 36899999999999999999999999999974
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-52 Score=401.67 Aligned_cols=239 Identities=35% Similarity=0.611 Sum_probs=202.3
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC------CC-
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG------GG- 52 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~------~~- 52 (383)
+||||+++||.+||| +|++|++||||||||+||+.||+||++++..+.. ++
T Consensus 8 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~~~~~~ 87 (291)
T PRK14299 8 AILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPPGPPGG 87 (291)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCCCCCCC
Confidence 589999999999999 9999999999999999999999999875432110 01
Q ss_pred CC-----CCCccchhhcccCCC-CCCCCC----CCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCc
Q 016758 53 GG-----AHDPFDIFQSFFGGS-PFGGGS----SRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGS 122 (383)
Q Consensus 53 ~~-----~~~~~d~F~~~Fgg~-~f~~~~----~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~ 122 (383)
++ ..++.|+|++|||++ ++++.+ .....++++.|+.+.+.|||+|+|.|+++++.+.
T Consensus 88 ~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~------------- 154 (291)
T PRK14299 88 GDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA------------- 154 (291)
T ss_pred CCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-------------
Confidence 11 124568999999752 111100 0012346789999999999999999999886431
Q ss_pred ccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEE
Q 016758 123 KSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKI 202 (383)
Q Consensus 123 ~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 202 (383)
.+.++|+||||+++|++|
T Consensus 155 --------------------------------------------------------------g~~~~V~Ip~G~~~G~~i 172 (291)
T PRK14299 155 --------------------------------------------------------------GERLSVRIPPGVREGQVI 172 (291)
T ss_pred --------------------------------------------------------------CEEEEEecCCCcCCCcEE
Confidence 146789999999999999
Q ss_pred EecCCcCCCCCCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEE
Q 016758 203 TFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKA 282 (383)
Q Consensus 203 ~~~g~G~~~~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~ 282 (383)
+|+|+|++. |||+|+|.+++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++ ++||++++
T Consensus 173 r~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~g~~~r 244 (291)
T PRK14299 173 RLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQAGRKLR 244 (291)
T ss_pred EECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCCCCEEE
Confidence 999999863 99999999999999999999999999999999999999999999997 88999987 79999999
Q ss_pred EcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCC
Q 016758 283 INDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 325 (383)
Q Consensus 283 i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp 325 (383)
|+|+|||.. ++.+|||||+|+|.||+.|+++++++|++++.
T Consensus 245 l~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~ 285 (291)
T PRK14299 245 LKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAE 285 (291)
T ss_pred ECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999963 34689999999999999999999999999874
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=1.5e-50 Score=393.39 Aligned_cols=255 Identities=28% Similarity=0.423 Sum_probs=210.4
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCch----hhccC--cCCC-
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGED----ALKEG--MGGG- 52 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~----~~~~g--~~~~- 52 (383)
++|||+++||.+||| +|++|++||||||||.||+.||+||.. ++.+. ++++
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~~~~~ 87 (306)
T PRK10266 8 AIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQ 87 (306)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccccCCCC
Confidence 589999999999999 999999999999999999999999854 22211 0011
Q ss_pred -CCCCCccchhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCceeeCC
Q 016758 53 -GGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCS 131 (383)
Q Consensus 53 -~~~~~~~d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~ 131 (383)
....++.++|+.|||+++ +..+...++++.|+.+++.|||+|+|+|+.+++.+++.+ |
T Consensus 88 ~~~~~~~~~~f~~~~g~~~---~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~-------------- 146 (306)
T PRK10266 88 SFNAEDFDDIFSSIFGQHA---RQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y-------------- 146 (306)
T ss_pred CCCCCCHHHHHHHHhCCCC---CCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c--------------
Confidence 112356688999997421 111122345789999999999999999999998876542 1
Q ss_pred CCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCC
Q 016758 132 GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEA 211 (383)
Q Consensus 132 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 211 (383)
.|.|... + ...++++|+||+|+++|++|+|+|+|++.
T Consensus 147 --~g~G~~~-----------~------------------------------~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~ 183 (306)
T PRK10266 147 --NAFGMIE-----------Q------------------------------EIPKTLNVKIPAGVGNGQRIRLKGQGTPG 183 (306)
T ss_pred --cCCCeEE-----------E------------------------------eeeEEEEEEECCCCcCCcEEEEecCCcCC
Confidence 1222110 0 12367999999999999999999999985
Q ss_pred C-CCCcccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCC
Q 016758 212 P-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 290 (383)
Q Consensus 212 ~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~ 290 (383)
+ +..+|||+|+|.+++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+ +.|++|++ +++|++++|+|+|||.
T Consensus 184 ~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g~G~p~ 260 (306)
T PRK10266 184 ENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKGKGLVS 260 (306)
T ss_pred CCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECCCCCCC
Confidence 4 567899999999999999999999999999999999999999999999998 79999998 6999999999999997
Q ss_pred CCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 291 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 291 ~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
.+ .+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 261 ~~---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~ 293 (306)
T PRK10266 261 KK---QTGDLYAVLKIVMPPKPDEKTAALWQQLADA 293 (306)
T ss_pred CC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 42 4899999999999999999999999999864
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-38 Score=297.25 Aligned_cols=282 Identities=38% Similarity=0.644 Sum_probs=224.8
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCc-CCCCCCCC
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGM-GGGGGAHD 57 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~-~~~~~~~~ 57 (383)
+||||+++||+.||| +|++|+.||||||||+||+.||+||++++.... .+.++..+
T Consensus 20 elLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~~~ 99 (336)
T KOG0713|consen 20 ELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGGGG 99 (336)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCCcc
Confidence 689999999999999 999999999999999999999999999997421 11111111
Q ss_pred ccchhhcccCCCCC--CCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCceeeCCCCcc
Q 016758 58 PFDIFQSFFGGSPF--GGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQG 135 (383)
Q Consensus 58 ~~d~F~~~Fgg~~f--~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G 135 (383)
.++|+.||+..++ ++.. ......++.++...+..+++++|.|...+..-.+.+.|.. .|+ .. |+-
T Consensus 100 -~~~f~~~f~dfg~~~~g~~-~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~-------~~---~~~ 166 (336)
T KOG0713|consen 100 -NDIFSAFFGDFGVTVGGNP-LEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGT-------RK---CNC 166 (336)
T ss_pred -cchHHHhhcccccccCCCc-ccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Ccc-------cc---cCC
Confidence 4678777763222 1211 1233678999999999999999999988766666555431 111 11 111
Q ss_pred cceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCCCCC
Q 016758 136 SGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTV 215 (383)
Q Consensus 136 ~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 215 (383)
. ..+..++.+||+++.++. ..|..|.+.+...+...+++.+..|+..+....+..+|.+..-+.
T Consensus 167 ~-~~~~~~~~~~g~~~~~q~---------------~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 230 (336)
T KOG0713|consen 167 R-LEMFTQQEGPGRFQMLQE---------------AVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGV 230 (336)
T ss_pred h-hhheeeccCCChhhhhhh---------------hhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecc
Confidence 1 234566777877776652 557777778888999999999999999999999999998877889
Q ss_pred cccEEEEEEEeeCCccccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCC
Q 016758 216 TGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPF 295 (383)
Q Consensus 216 ~GDliv~i~vk~h~~f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~ 295 (383)
|||+++.+..-+|+.|.|+++||++++.|+|.+||.|+...+.|+|+..+.++.. .+..|+..++..++|||..++..
T Consensus 231 ~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~--~~~~p~~~~~~~~~~~~~l~~~~ 308 (336)
T KOG0713|consen 231 PGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRK--KITWPGARTRKKGEGMPLLKNRN 308 (336)
T ss_pred cCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhh--hccccchhhhhhhccchhhhccc
Confidence 9999999999999999999999999999999999999999999999987666543 34689999999999999876677
Q ss_pred CCCceEEEEEEeCCCC-CCH
Q 016758 296 MRGKLYIHFTVDFPES-LSP 314 (383)
Q Consensus 296 ~~GdL~i~f~V~~P~~-l~~ 314 (383)
..|++|++|.+.||.+ ++.
T Consensus 309 ~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 309 EKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhcceeEEecccCcccccch
Confidence 8999999999999966 565
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.98 E-value=4.3e-32 Score=280.06 Aligned_cols=162 Identities=18% Similarity=0.223 Sum_probs=142.0
Q ss_pred CCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcc
Q 016758 83 RGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKG 162 (383)
Q Consensus 83 kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G 162 (383)
..-++.+.|.|+|+++|+|+++++++.|.+.| |.|
T Consensus 655 ~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G----------------------------------------- 689 (871)
T TIGR03835 655 TNVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT----------------------------------------- 689 (871)
T ss_pred cccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC-----------------------------------------
Confidence 35678999999999999999999999887654 111
Q ss_pred eeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCCCCCcccEEEEEEEeeCCccccccccccccc
Q 016758 163 TGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 242 (383)
Q Consensus 163 ~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv~i~vk~h~~f~R~g~dL~~~~ 242 (383)
...+.+.++++|+||||+++|++|+|+|+|++.+++ +|||||+|++++|+.|+|+|+|||+++
T Consensus 690 ----------------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg-~GDLyVvIkVKPHp~FrRdGdDL~~~v 752 (871)
T TIGR03835 690 ----------------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNG-CGDLKVVFKVIPSNFFQIKNDGLHVAA 752 (871)
T ss_pred ----------------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCC-CCCEEEEEEEcCCCCeEEECCeEEEEE
Confidence 113345689999999999999999999999987665 499999999999999999999999999
Q ss_pred cCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEe-CCCC
Q 016758 243 TLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVD-FPES 311 (383)
Q Consensus 243 ~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~-~P~~ 311 (383)
.|+|.+||+|+++.|+||||+ +.|+||++ ++||++++|+|+|||.. ++.||||||+|.|. ++++
T Consensus 753 ~ISL~EALLGgtIeIpTLDGr-VkLkIPpg--TqpGqvLRIkGKGMP~~--~~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 753 LVDPLVAYNGGIIDVFGPNKL-FNVRIPGG--IKVNDQVIFKDLGLTKT--KYDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred ecCHHHHhcCCEEEeeCCCCC-EEEeeCCC--CCCCcEEEECCCCCCCC--CCCCCCEEEEEEEeecccc
Confidence 999999999999999999998 88999988 79999999999999954 34689999999986 5554
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.4e-33 Score=265.42 Aligned_cols=219 Identities=30% Similarity=0.636 Sum_probs=187.7
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCCCCCCCcc
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPF 59 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~~~~~~~~ 59 (383)
+||||+++||.+||| +|++|++|||||||++||+.||++|..+. ++..+++.
T Consensus 47 ~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~------~~~~g~~~ 120 (288)
T KOG0715|consen 47 KVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH------GEFGGNPF 120 (288)
T ss_pred hhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc------ccccCCcc
Confidence 689999999999999 99999999999999999999999997651 11223688
Q ss_pred chhhcccCCCCCCCCCCCCccccCCcceeeeEEEehhhhcccceeeecceeeeeCCCCCCCCcccCce-eeCCCCcccce
Q 016758 60 DIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGAS-MKCSGCQGSGM 138 (383)
Q Consensus 60 d~F~~~Fgg~~f~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~ 138 (383)
++|..+|++. ......+.++.+.+.++|+++-.|..+.+.+.....|.+|.|.|...+.. ..|..|.|+|.
T Consensus 121 ~~~~~~~~~~--------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 192 (288)
T KOG0715|consen 121 DVFLEFFGGK--------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGL 192 (288)
T ss_pred chHHHhhccc--------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccc
Confidence 9999998730 11223456777889999999999999999999999999999999887765 78999999996
Q ss_pred EEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCCCCCccc
Q 016758 139 KVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGD 218 (383)
Q Consensus 139 ~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GD 218 (383)
........+.+ . +|..|.|.|.+.. +.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+.+.. |
T Consensus 193 ~~~~~~~~f~~----~-~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-------~ 258 (288)
T KOG0715|consen 193 VSNPKEDPFIL----Y-TCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-------D 258 (288)
T ss_pred ccccccCCcce----e-ecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------e
Confidence 65444444322 2 8999999999997 4499999999999999999999999999999999988753 9
Q ss_pred EEEEEEEeeCCccccccccccccccCCHHH
Q 016758 219 IVFVLQQKEHPKFKRKGDDLFVEHTLSLTE 248 (383)
Q Consensus 219 liv~i~vk~h~~f~R~g~dL~~~~~I~l~e 248 (383)
|+|.+.|.+++.|.|+|.|++++..|++.+
T Consensus 259 l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 259 LFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred EEEEEEeccCcccccccCcccccccccccC
Confidence 999999999999999999999999998753
No 36
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.86 E-value=3.2e-22 Score=157.28 Aligned_cols=81 Identities=41% Similarity=0.657 Sum_probs=70.3
Q ss_pred cccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHH
Q 016758 237 DLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQ 316 (383)
Q Consensus 237 dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~ 316 (383)
|||++++|||++|++|+++.|+||||+.+.|++|++ +++|+.++|+|+|||...+++.+|||||+|+|.||++||++|
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 799999999999999999999999999999999998 799999999999999987766899999999999999999999
Q ss_pred HHH
Q 016758 317 CKM 319 (383)
Q Consensus 317 ~~~ 319 (383)
+++
T Consensus 79 k~l 81 (81)
T PF01556_consen 79 KEL 81 (81)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 37
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.6e-18 Score=164.45 Aligned_cols=226 Identities=42% Similarity=0.696 Sum_probs=169.0
Q ss_pred cccCCCCCCCHHHHH------------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcC-CC---C
Q 016758 2 RFSESRKNASQDDLK------------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG---G 53 (383)
Q Consensus 2 ~iLGV~~~As~~EIK------------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~-~~---~ 53 (383)
+||+|.++|+.+||| +|++|++|||||||+.||++||+||++++.+... .. .
T Consensus 7 ~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~~~~~~ 86 (306)
T KOG0714|consen 7 KILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFSSSFTS 86 (306)
T ss_pred HHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCCCCCCC
Confidence 689999999999999 7999999999999999999999999977664111 00 0
Q ss_pred -----CCCCccchhhcccCCC-CCC-------------------C-------CCC----------CCccccCCcceeeeE
Q 016758 54 -----GAHDPFDIFQSFFGGS-PFG-------------------G-------GSS----------RGRRQRRGEDVIHPL 91 (383)
Q Consensus 54 -----~~~~~~d~F~~~Fgg~-~f~-------------------~-------~~~----------~~~~~~kg~di~~~l 91 (383)
...++.++|..|||.. .+. . ... ......+...+.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (306)
T KOG0714|consen 87 ELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPPVEHPL 166 (306)
T ss_pred CcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCCccCCc
Confidence 1123456677777611 100 0 000 000112223355566
Q ss_pred EEehhhhcccceeeecceeeeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCC
Q 016758 92 KVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 171 (383)
Q Consensus 92 ~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~ 171 (383)
.+++++++.|..++..+.+... .....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~------------ 193 (306)
T KOG0714|consen 167 RVSLEDLYKGESKKMKISRQSF-----------------------------------------TSNGR------------ 193 (306)
T ss_pred ceeHHHhccccceeeecccccc-----------------------------------------cCCcc------------
Confidence 6688888888888876655432 00000
Q ss_pred CCCCCCCceEEEEcEEEEEEeccCcccCCEEEecCCcCCCCCCCcccEEEEEEEeeCCcccccccccccc--ccCCHHHH
Q 016758 172 RCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVE--HTLSLTEA 249 (383)
Q Consensus 172 ~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv~i~vk~h~~f~R~g~dL~~~--~~I~l~eA 249 (383)
........+.+.+.+++..|..+.+..+|+..++..|-++++.+..++|..|.|.+++|... ..|++.+|
T Consensus 194 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~ 265 (306)
T KOG0714|consen 194 --------EGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEA 265 (306)
T ss_pred --------cccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhh
Confidence 01234577889999999999999999999988888899999999999999999999999999 99999999
Q ss_pred hCCCEEEEEccCCCEEEEEcCCC-CcccCCcEEEEcCCCCCC
Q 016758 250 LCGFQFVITHLDGRQLLIKSQPG-EVVKPDQFKAINDEGMPM 290 (383)
Q Consensus 250 l~G~~~~i~tldG~~l~i~ip~g-~vi~~g~~~~i~g~Gmp~ 290 (383)
++|....+++++++.+.+ +.. .++.++...+++++|||.
T Consensus 266 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 266 LLGVTVFVPTLDGRSYSL--SINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred hcCcceeeecccCccccC--cccccccCCCceeeecCCCCCC
Confidence 999999999999987655 444 678999999999999985
No 38
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.3e-15 Score=145.65 Aligned_cols=131 Identities=21% Similarity=0.468 Sum_probs=96.9
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc--------CceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEc
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS--------GASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 168 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~--------~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 168 (383)
+.|.|...+ .-+..++|++|+|+|... ...++|+.|+|+|.++ +.+|+.|+|.|.+..
T Consensus 146 ~~C~GsGak-~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-------------~~pC~~C~G~G~v~~ 211 (371)
T COG0484 146 STCHGSGAK-PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-------------KDPCGKCKGKGRVKK 211 (371)
T ss_pred CcCCCCCCC-CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------------CCCCCCCCCCCeEee
Confidence 778888666 445778999999999643 1237899999999975 789999999999765
Q ss_pred CCCC-----CCCCCCceE-----------------------------------------------------E---EEcEE
Q 016758 169 DKDR-----CPQCKGEKV-----------------------------------------------------I---QEKKV 187 (383)
Q Consensus 169 ~~~~-----C~~C~G~g~-----------------------------------------------------~---~~~~~ 187 (383)
.+.. -....|..+ + .-...
T Consensus 212 ~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~ 291 (371)
T COG0484 212 KKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR 291 (371)
T ss_pred eeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC
Confidence 4433 111111111 1 01144
Q ss_pred EEEEeccCcccCCEEEecCCcCCC-CCCCcccEEEEEEEeeCCcccccccccccc
Q 016758 188 LEVIVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGDDLFVE 241 (383)
Q Consensus 188 l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~GDliv~i~vk~h~~f~R~g~dL~~~ 241 (383)
++|+||||+++|++++|+|+|.+. .+...|||||.|.|.-+..+......|+-+
T Consensus 292 ~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~ 346 (371)
T COG0484 292 VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE 346 (371)
T ss_pred EEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 899999999999999999999984 455679999999999998876666555443
No 39
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.57 E-value=5e-15 Score=111.73 Aligned_cols=65 Identities=43% Similarity=0.947 Sum_probs=53.3
Q ss_pred CCCCCCCCcccCc-eeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCce
Q 016758 114 CTKCKGKGSKSGA-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEK 180 (383)
Q Consensus 114 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 180 (383)
|+.|+|+|+..+. ..+|+.|+|+|+++..++ .|+++++++.+|+.|+|+|+++ ++++|+.|+|++
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 8999999997665 489999999999999888 7778899999999999999999 789999999975
No 40
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=1.8e-13 Score=136.73 Aligned_cols=132 Identities=21% Similarity=0.357 Sum_probs=96.7
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|+..+ .-.....|+.|+|+|.... ...+|+.|+|+|..+ ..+|+.|+|+|.+
T Consensus 156 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 221 (369)
T PRK14282 156 PHCGGTGVE-PGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------------GEYCHECGGSGRI 221 (369)
T ss_pred CCCCccCCC-CCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------------CCCCCCCCCceeE
Confidence 556777655 2234578999999997531 236899999999865 6789999999976
Q ss_pred EcCCCC-----CCCCC-------------------CceEE------------------------------------E--E
Q 016758 167 INDKDR-----CPQCK-------------------GEKVI------------------------------------Q--E 184 (383)
Q Consensus 167 ~~~~~~-----C~~C~-------------------G~g~~------------------------------------~--~ 184 (383)
...+.. =..-. |.=++ . .
T Consensus 222 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ld 301 (369)
T PRK14282 222 RRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPE 301 (369)
T ss_pred EEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCC
Confidence 543222 00000 11011 1 0
Q ss_pred cEEEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccccccccc
Q 016758 185 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 242 (383)
Q Consensus 185 ~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~ 242 (383)
.+.++|+||+|+++|++|+|+|+|++.. +..+|||||+|+++.|+.|++++.+|+.++
T Consensus 302 G~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 302 GGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 1568999999999999999999999853 346799999999999999999999887753
No 41
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=5.5e-13 Score=132.99 Aligned_cols=131 Identities=21% Similarity=0.457 Sum_probs=95.7
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|+|+..+ .-.....|+.|+|+|.... ...+|+.|+|+|..+ ..+|..|+|+|.+...+
T Consensus 150 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 215 (365)
T PRK14285 150 ESCLGKKSE-KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------SNPCKSCKGKGSLKKKE 215 (365)
T ss_pred CCCCCcccC-CCCCCccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------CCCCCCCCCCCEEeccE
Confidence 557787665 3344568999999996531 236899999999865 67899999999876433
Q ss_pred CC-----CCCCC-------------------CceEEEE--------------------------------------cEEE
Q 016758 171 DR-----CPQCK-------------------GEKVIQE--------------------------------------KKVL 188 (383)
Q Consensus 171 ~~-----C~~C~-------------------G~g~~~~--------------------------------------~~~l 188 (383)
.. =..=. |.=++.. .+.+
T Consensus 216 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v 295 (365)
T PRK14285 216 TIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKI 295 (365)
T ss_pred EEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEE
Confidence 22 00000 1101110 1579
Q ss_pred EEEeccCcccCCEEEecCCcCCCCCC-CcccEEEEEEEeeCCcccccccccccc
Q 016758 189 EVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLFVE 241 (383)
Q Consensus 189 ~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDliv~i~vk~h~~f~R~g~dL~~~ 241 (383)
+|+||+|+++|++|+|+|+|++.++. ..|||||+|+++.|+.|.+++..|+..
T Consensus 296 ~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 296 KIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999986544 469999999999999999888766654
No 42
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=6.1e-13 Score=133.13 Aligned_cols=132 Identities=20% Similarity=0.366 Sum_probs=95.7
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc----------CceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS----------GASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~----------~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|+|...+- -.....|+.|+|+|... ....+|+.|+|+|..+ ..+|+.|+|+|.+
T Consensus 145 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 210 (377)
T PRK14298 145 STCSGTGAKP-GTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------------ESPCPVCSGTGKV 210 (377)
T ss_pred CCCCCCcccC-CCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------------CCCCCCCCCccEE
Confidence 5567776652 23456799999999653 1236899999999865 5789999999987
Q ss_pred EcCCCCC-----CCCC-------------------------------------------------------CceEEE-Ec
Q 016758 167 INDKDRC-----PQCK-------------------------------------------------------GEKVIQ-EK 185 (383)
Q Consensus 167 ~~~~~~C-----~~C~-------------------------------------------------------G~g~~~-~~ 185 (383)
...+..- ..-. +...+. -.
T Consensus 211 ~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 290 (377)
T PRK14298 211 RKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLY 290 (377)
T ss_pred EEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCC
Confidence 6432220 0000 110100 01
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCCC-CCcccEEEEEEEeeCCccccccccccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 242 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~vk~h~~f~R~g~dL~~~~ 242 (383)
..++|+||+|+++|++++|+|+|.+..+ ...|||||+|+|..|+.|++++.+|+.++
T Consensus 291 G~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 291 GKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999999999999998543 45799999999999999999998887764
No 43
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=5e-13 Score=133.35 Aligned_cols=131 Identities=22% Similarity=0.441 Sum_probs=97.2
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|....-. ....|+.|+|+|.... ...+|+.|+|+|+.+ +.+|+.|+|+|.+
T Consensus 153 ~~C~G~g~~~~--~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 217 (365)
T PRK14290 153 PDCSGTGAKNG--KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------EEKCPRCNGTGTV 217 (365)
T ss_pred CCCccccCCCC--CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------cCCCCCCCCceeE
Confidence 45677665432 4578999999996431 136899999999864 6789999999997
Q ss_pred EcCCCC---------------------CC-------------------------------------CCCCceEEE-EcEE
Q 016758 167 INDKDR---------------------CP-------------------------------------QCKGEKVIQ-EKKV 187 (383)
Q Consensus 167 ~~~~~~---------------------C~-------------------------------------~C~G~g~~~-~~~~ 187 (383)
...+.. .. .|.+...+. ....
T Consensus 218 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~ 297 (365)
T PRK14290 218 VVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK 297 (365)
T ss_pred EEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce
Confidence 653322 10 000111111 1156
Q ss_pred EEEEeccCcccCCEEEecCCcCCCCC-CCcccEEEEEEEeeCCccccccccccccc
Q 016758 188 LEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEH 242 (383)
Q Consensus 188 l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~vk~h~~f~R~g~dL~~~~ 242 (383)
++|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus 298 i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 298 YNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999998654 36899999999999999999999988864
No 44
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=9.4e-13 Score=131.42 Aligned_cols=133 Identities=21% Similarity=0.427 Sum_probs=96.6
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|.|....- -.....|+.|+|+|.... ...+|+.|+|+|+.+ ..+|+.|+|+|.+...+
T Consensus 148 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 213 (366)
T PRK14294 148 EECHGSGCEP-GTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------------VSPCKTCHGQGRVRVSK 213 (366)
T ss_pred CCCCCccccC-CCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------------CcCCCCCCCceEeecce
Confidence 4566766542 223578999999997542 236899999999865 67899999999886533
Q ss_pred CC---------------------C-CC--------------------------------------CCCceEEE-EcEEEE
Q 016758 171 DR---------------------C-PQ--------------------------------------CKGEKVIQ-EKKVLE 189 (383)
Q Consensus 171 ~~---------------------C-~~--------------------------------------C~G~g~~~-~~~~l~ 189 (383)
.. - .. +.+...+. -...++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~ 293 (366)
T PRK14294 214 TVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERE 293 (366)
T ss_pred eEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEE
Confidence 32 0 00 00111111 014469
Q ss_pred EEeccCcccCCEEEecCCcCCCCC-CCcccEEEEEEEeeCCcccccccccccccc
Q 016758 190 VIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVEHT 243 (383)
Q Consensus 190 V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~vk~h~~f~R~g~dL~~~~~ 243 (383)
|.||+|+++|++|+|+|+|++.++ ..+|||||+|++..|+.|.++..+|+..+.
T Consensus 294 v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 294 LKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred EEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999998654 468999999999999999999988887643
No 45
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=1.7e-12 Score=130.63 Aligned_cols=126 Identities=23% Similarity=0.480 Sum_probs=90.4
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|.|...+- -.....|+.|+|+|.... ...+|+.|+|+|+.+ ..+|..|+|+|.+...+
T Consensus 177 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------------~~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 177 TTCHGSGARP-GTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------------EDPCEECKGTGVTTRTR 242 (392)
T ss_pred CCCccccccC-CCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------------CCcCCCCCCCeEEEEee
Confidence 4567777653 234578999999997642 236899999999875 67899999999886533
Q ss_pred CC---------------------C-CCC--CCceEEE-------------------------------------EcEEEE
Q 016758 171 DR---------------------C-PQC--KGEKVIQ-------------------------------------EKKVLE 189 (383)
Q Consensus 171 ~~---------------------C-~~C--~G~g~~~-------------------------------------~~~~l~ 189 (383)
.. - ... .|.=++. -...++
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~ 322 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVG 322 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEE
Confidence 22 0 000 0111110 114589
Q ss_pred EEeccCcccCCEEEecCCcCCCCCCCcccEEEEEEEeeCCccccccc
Q 016758 190 VIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGD 236 (383)
Q Consensus 190 V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv~i~vk~h~~f~R~g~ 236 (383)
|+||+|+++|++|+|+|+|++.++...|||||+|+|..+..+..+..
T Consensus 323 v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q~ 369 (392)
T PRK14279 323 VKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAAA 369 (392)
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence 99999999999999999999866667899999999998875444433
No 46
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=4.3e-12 Score=127.54 Aligned_cols=127 Identities=25% Similarity=0.478 Sum_probs=87.3
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc-------C---ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|.... .-.....|+.|+|+|... + ...+|+.|+|+|..+ ..+|+.|+|+|.+
T Consensus 159 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 224 (386)
T PRK14277 159 DVCKGSGAK-PGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------------TDPCNKCGGTGRI 224 (386)
T ss_pred CCCCCCCcC-CCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------------cCCCCCCCCCcEE
Confidence 456776655 223457899999999653 1 226899999999875 5789999999987
Q ss_pred EcCCCC---------------------C-CC--CCCceEEEE-------------------------------------c
Q 016758 167 INDKDR---------------------C-PQ--CKGEKVIQE-------------------------------------K 185 (383)
Q Consensus 167 ~~~~~~---------------------C-~~--C~G~g~~~~-------------------------------------~ 185 (383)
...+.. . .. =.|.=++.- .
T Consensus 225 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 304 (386)
T PRK14277 225 RRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLD 304 (386)
T ss_pred eeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCC
Confidence 543322 0 00 001111110 1
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCCC-CCcccEEEEEEEeeCCcccccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDD 237 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~vk~h~~f~R~g~d 237 (383)
..++|.||+|+++|++++|+|+|.+..+ ...|||||+|+|.-+..++.+...
T Consensus 305 G~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~ 357 (386)
T PRK14277 305 GKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKE 357 (386)
T ss_pred CCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHH
Confidence 3379999999999999999999998543 357999999999988754444433
No 47
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1.7e-12 Score=129.82 Aligned_cols=132 Identities=20% Similarity=0.470 Sum_probs=95.7
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc------CceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS------GASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~------~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|.|....- -.....|+.|+|+|... ....+|+.|+|+|..+ ..+|+.|+|+|.+...+
T Consensus 146 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 211 (371)
T PRK10767 146 DTCHGSGAKP-GTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------------KDPCKKCHGQGRVEKEK 211 (371)
T ss_pred CCCCCcccCC-CCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------------CCCCCCCCCCceEeeee
Confidence 4567766552 23446899999999653 1236899999999865 57899999999876433
Q ss_pred CC---------------------CCCC---CCceEEEE-------------------------------------cEEEE
Q 016758 171 DR---------------------CPQC---KGEKVIQE-------------------------------------KKVLE 189 (383)
Q Consensus 171 ~~---------------------C~~C---~G~g~~~~-------------------------------------~~~l~ 189 (383)
.. -... .|.-++.. ...++
T Consensus 212 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~ 291 (371)
T PRK10767 212 TLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVK 291 (371)
T ss_pred eEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEE
Confidence 22 0000 01111110 13589
Q ss_pred EEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccccccccc
Q 016758 190 VIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVEH 242 (383)
Q Consensus 190 V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~~ 242 (383)
|.||+|+++|++++|+|+|.+.+ +...|||||+|+|..|+.|++++.+|+.++
T Consensus 292 v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 292 LKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999854 346799999999999999999998887764
No 48
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1.6e-12 Score=129.99 Aligned_cols=128 Identities=21% Similarity=0.504 Sum_probs=91.1
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc---C---ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS---G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|.|...+ .-.....|+.|+|+|... + ...+|+.|+|+|..+ ..+|+.|+|+|.+...+
T Consensus 149 ~~C~G~g~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 214 (372)
T PRK14300 149 DTCHGSGSE-KGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------------KNPCKKCHGMGRYHKQR 214 (372)
T ss_pred CCCCCcccC-CCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------------CCCCCCCCCceEEEeeE
Confidence 456777655 233457899999999753 1 236899999999875 67899999999975432
Q ss_pred CC---------------------C-CC--------------------------------------CCCceEEEE--cEEE
Q 016758 171 DR---------------------C-PQ--------------------------------------CKGEKVIQE--KKVL 188 (383)
Q Consensus 171 ~~---------------------C-~~--------------------------------------C~G~g~~~~--~~~l 188 (383)
.. . .. +.+...+.. .+.+
T Consensus 215 ~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i 294 (372)
T PRK14300 215 NLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKV 294 (372)
T ss_pred EEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEE
Confidence 22 0 00 001111111 1579
Q ss_pred EEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccccc
Q 016758 189 EVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDL 238 (383)
Q Consensus 189 ~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL 238 (383)
+|+||+|+++|++|+|+|+|++.+ +..+|||||+|+|+.|..|+-+...|
T Consensus 295 ~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~ 345 (372)
T PRK14300 295 NLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQREL 345 (372)
T ss_pred EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 999999999999999999999864 35689999999999998665544333
No 49
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=4.3e-12 Score=126.78 Aligned_cols=129 Identities=23% Similarity=0.516 Sum_probs=91.1
Q ss_pred hhhcccceeeecceeeeeCCCCCCCCccc---C---ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcC
Q 016758 96 EDLYNGTSKKLSLSRNVICTKCKGKGSKS---G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND 169 (383)
Q Consensus 96 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~ 169 (383)
-+.|+|...+-. ....|+.|+|+|... + ...+|+.|+|+|+.+ ..+|+.|+|.|.+...
T Consensus 143 C~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~ 207 (369)
T PRK14288 143 CESCDGTGAKDK--ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------------KTPCQACKGKTYILKD 207 (369)
T ss_pred CCCCCCcccCCC--CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------------cccCccCCCcceEEEE
Confidence 356777765532 457899999999653 1 236899999999865 5789999999987543
Q ss_pred CCC---------------------C-CCC-CCceEEEE--------------------------------------cEEE
Q 016758 170 KDR---------------------C-PQC-KGEKVIQE--------------------------------------KKVL 188 (383)
Q Consensus 170 ~~~---------------------C-~~C-~G~g~~~~--------------------------------------~~~l 188 (383)
+.. - ... .|.=++.. .+.+
T Consensus 208 ~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l 287 (369)
T PRK14288 208 EEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDEL 287 (369)
T ss_pred EEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEE
Confidence 221 0 000 01111100 1468
Q ss_pred EEEeccCcccCCEEEecCCcCCCCCC-CcccEEEEEEEeeCCcccccccccc
Q 016758 189 EVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGDDLF 239 (383)
Q Consensus 189 ~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDliv~i~vk~h~~f~R~g~dL~ 239 (383)
+|+||+|+++|++++|+|+|++.++. ..|||||+|+|+.|+.|+.+...|+
T Consensus 288 ~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 339 (369)
T PRK14288 288 ELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELL 339 (369)
T ss_pred EEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999986553 4599999999999987766554433
No 50
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=4.2e-12 Score=127.01 Aligned_cols=131 Identities=21% Similarity=0.464 Sum_probs=93.5
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|.|.... .-.....|+.|+|+|.... ...+|+.|+|+|..+ ..+|+.|+|+|.+...+
T Consensus 148 ~~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 213 (373)
T PRK14301 148 DDCGGSGAA-PGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-------------THPCPKCKGSGIVQQTR 213 (373)
T ss_pred CCCCCcccC-CCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-------------CCCCCCCCCCceeccce
Confidence 456776655 2234568999999997531 236899999999875 57899999999876533
Q ss_pred CC----------------------CCCC--CCceEEEE-------------------------------------cEEEE
Q 016758 171 DR----------------------CPQC--KGEKVIQE-------------------------------------KKVLE 189 (383)
Q Consensus 171 ~~----------------------C~~C--~G~g~~~~-------------------------------------~~~l~ 189 (383)
.. -... .|.-++.. ...++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~ 293 (373)
T PRK14301 214 ELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVT 293 (373)
T ss_pred EEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEE
Confidence 22 0111 01111111 14489
Q ss_pred EEeccCcccCCEEEecCCcCCCCC-CCcccEEEEEEEeeCCcccccccccccc
Q 016758 190 VIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFVE 241 (383)
Q Consensus 190 V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~vk~h~~f~R~g~dL~~~ 241 (383)
|+||+|+++|++++|+|+|.+.++ ...|||||+|+|..|+.+..+..+|+..
T Consensus 294 v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 294 LDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998654 4579999999999998777766555554
No 51
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=2e-12 Score=130.05 Aligned_cols=131 Identities=20% Similarity=0.445 Sum_probs=94.8
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|+|...+.. .....|+.|+|+|.... ...+|+.|+|+|..+ ..+|+.|+|.|.+...+
T Consensus 162 ~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v~~~~ 227 (391)
T PRK14284 162 DACSGSGANSS-QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------------TDPCSVCRGQGRIKDKR 227 (391)
T ss_pred CCCcccccCCC-CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------------CCcCCCCCCcceecceE
Confidence 55677766533 33578999999997531 236899999999865 57899999999875432
Q ss_pred CC------------------------------------------------------------CCCCCCceEEE-E--cEE
Q 016758 171 DR------------------------------------------------------------CPQCKGEKVIQ-E--KKV 187 (383)
Q Consensus 171 ~~------------------------------------------------------------C~~C~G~g~~~-~--~~~ 187 (383)
.. =..+.+...+. . ...
T Consensus 228 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~ 307 (391)
T PRK14284 228 SVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGT 307 (391)
T ss_pred EEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcE
Confidence 22 00011222221 1 257
Q ss_pred EEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCcccccccccccc
Q 016758 188 LEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 241 (383)
Q Consensus 188 l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~ 241 (383)
++|+||+|+++|++++|+|+|++.. +..+|||||+|++..++.++.+...|+..
T Consensus 308 i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 362 (391)
T PRK14284 308 CRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ 362 (391)
T ss_pred EEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999999854 34689999999999998877777665544
No 52
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=6.7e-12 Score=125.76 Aligned_cols=126 Identities=23% Similarity=0.438 Sum_probs=89.6
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc-------C---ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
+.|.|...+ .-.....|+.|+|+|... + ...+|+.|+|+|..+ ..+|+.|+|+|.+
T Consensus 143 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 208 (378)
T PRK14278 143 DRCHGKGTA-GDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------------PDPCHECAGDGRV 208 (378)
T ss_pred CCCcCccCC-CCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------------CCCCCCCCCceeE
Confidence 456777655 233456899999999743 1 236899999999875 5789999999987
Q ss_pred EcCCCC----------------------C--------------------------------------CCCCCceEEE--E
Q 016758 167 INDKDR----------------------C--------------------------------------PQCKGEKVIQ--E 184 (383)
Q Consensus 167 ~~~~~~----------------------C--------------------------------------~~C~G~g~~~--~ 184 (383)
...+.. - ..|.+...+. .
T Consensus 209 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 288 (378)
T PRK14278 209 RARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAIL 288 (378)
T ss_pred ecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCC
Confidence 653332 0 0011111222 1
Q ss_pred cEEEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccc
Q 016758 185 KKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGD 236 (383)
Q Consensus 185 ~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~ 236 (383)
.+.++|.||+|+++|++++|+|+|++.. +...|||||+|+|.-+..+..+..
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk 341 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDI 341 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHH
Confidence 2678999999999999999999999854 345799999999998875544433
No 53
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=6.7e-12 Score=126.15 Aligned_cols=129 Identities=22% Similarity=0.462 Sum_probs=91.8
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|.|...+ .-.....|+.|+|+|.... ...+|+.|+|+|..+ ..+|..|.|+|.+...+
T Consensus 170 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~~~~~ 235 (389)
T PRK14295 170 PACSGTGAK-NGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------------DDPCLVCKGSGRAKSSR 235 (389)
T ss_pred CCCcccccC-CCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------------ccCCCCCCCCceEeeee
Confidence 567777665 2234578999999997531 236899999999875 57899999999876533
Q ss_pred CC----------------------CCC--CCCceEEEE--------------------------------------cEEE
Q 016758 171 DR----------------------CPQ--CKGEKVIQE--------------------------------------KKVL 188 (383)
Q Consensus 171 ~~----------------------C~~--C~G~g~~~~--------------------------------------~~~l 188 (383)
.. ... -.|.=++.- .+.+
T Consensus 236 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~ 315 (389)
T PRK14295 236 TMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPV 315 (389)
T ss_pred EEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEE
Confidence 22 000 001111110 1479
Q ss_pred EEEeccCcccCCEEEecCCcCCCCCCCcccEEEEEEEeeCCcccccccccc
Q 016758 189 EVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLF 239 (383)
Q Consensus 189 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv~i~vk~h~~f~R~g~dL~ 239 (383)
+|+||+|+++|++|+|+|+|++..+...|||||+|++.-+..+......|+
T Consensus 316 ~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~qk~~l 366 (389)
T PRK14295 316 TVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREAL 366 (389)
T ss_pred EEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999865566899999999998876554443333
No 54
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=5.7e-12 Score=125.95 Aligned_cols=131 Identities=19% Similarity=0.381 Sum_probs=93.1
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|+..+ .-.+...|+.|+|+|.... ...+|+.|+|+|..+ ..+|..|+|+|.+
T Consensus 142 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 207 (371)
T PRK14287 142 GTCHGSGAK-PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------------KQKCATCGGKGKV 207 (371)
T ss_pred CCCCCcccC-CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------------cccCCCCCCeeEE
Confidence 567777665 3344578999999996531 236899999999865 5789999999987
Q ss_pred EcCCCC----------------------CCC--CCCceEEEE-------------------------------------c
Q 016758 167 INDKDR----------------------CPQ--CKGEKVIQE-------------------------------------K 185 (383)
Q Consensus 167 ~~~~~~----------------------C~~--C~G~g~~~~-------------------------------------~ 185 (383)
...+.. -.. =.|.=++.- .
T Consensus 208 ~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ld 287 (371)
T PRK14287 208 RKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLN 287 (371)
T ss_pred eeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCC
Confidence 542211 000 001101100 1
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCcccccccccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFVE 241 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~~ 241 (383)
..++|+||+|+++|++++|+|+|.+.. +...|||||+|+|..|+.|+++...|+..
T Consensus 288 g~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 344 (371)
T PRK14287 288 GKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMRE 344 (371)
T ss_pred CCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 448999999999999999999999854 34579999999999999888777655554
No 55
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.28 E-value=6.1e-12 Score=125.13 Aligned_cols=130 Identities=20% Similarity=0.445 Sum_probs=92.4
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|.... .-.....|+.|+|+|.... ...+|+.|+|+|+.+ +.+|+.|.|+|.+
T Consensus 147 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 212 (354)
T TIGR02349 147 ETCHGTGAK-PGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------------KEPCSTCKGKGRV 212 (354)
T ss_pred CCCCCCCCC-CCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------------CCCCCCCCCCcEe
Confidence 456676654 2233578999999996431 236899999999875 5689999999987
Q ss_pred EcCCCC----------------------CCCC--CCceEEE-------------------------------------Ec
Q 016758 167 INDKDR----------------------CPQC--KGEKVIQ-------------------------------------EK 185 (383)
Q Consensus 167 ~~~~~~----------------------C~~C--~G~g~~~-------------------------------------~~ 185 (383)
...+.. ...- .|.=++. -.
T Consensus 213 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ld 292 (354)
T TIGR02349 213 KERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLD 292 (354)
T ss_pred cccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCC
Confidence 654332 1000 0110110 01
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCCC-CCcccEEEEEEEeeCCccccccccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLFV 240 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~vk~h~~f~R~g~dL~~ 240 (383)
..++|.||+|+++|++++|+|+|++.++ ..+|||||+|+|..++.|+++...++-
T Consensus 293 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~ 348 (354)
T TIGR02349 293 GDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLE 348 (354)
T ss_pred ceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 3589999999999999999999998654 368999999999999988877765543
No 56
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=8.5e-12 Score=124.92 Aligned_cols=132 Identities=20% Similarity=0.426 Sum_probs=94.8
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc-------C---ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|...+.. .....|+.|+|+|... + ...+|+.|+|+|..+ ..+|..|.|+|.+
T Consensus 147 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 212 (374)
T PRK14293 147 ETCRGSGAKPG-TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------------EDPCDACGGQGVK 212 (374)
T ss_pred CCCCCcCCCCC-CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------------ccCCCCCCCCccc
Confidence 45667665532 2446899999999753 1 226899999999875 5789999999987
Q ss_pred EcCCCC----------------------CCCC--CCceEEEE-------------------------------------c
Q 016758 167 INDKDR----------------------CPQC--KGEKVIQE-------------------------------------K 185 (383)
Q Consensus 167 ~~~~~~----------------------C~~C--~G~g~~~~-------------------------------------~ 185 (383)
...+.. -..- .|.=++.- .
T Consensus 213 ~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ld 292 (374)
T PRK14293 213 QVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVD 292 (374)
T ss_pred ccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCC
Confidence 553322 0000 01111110 1
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCCCC--CcccEEEEEEEeeCCccccccccccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAPDT--VTGDIVFVLQQKEHPKFKRKGDDLFVEH 242 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~--~~GDliv~i~vk~h~~f~R~g~dL~~~~ 242 (383)
..++|+||+|+++|++++|+|+|.+.++. ..|||||+|+|..|+.|++++.+|+..+
T Consensus 293 G~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 293 GPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999999985443 4799999999999999999988877654
No 57
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=1.2e-11 Score=123.82 Aligned_cols=129 Identities=22% Similarity=0.427 Sum_probs=91.1
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|.|...+- -.....|+.|+|+|.... ...+|+.|+|+|+.+ ..+|+.|+|+|.+...+
T Consensus 154 ~~C~G~G~~~-~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~~~~~ 219 (372)
T PRK14286 154 VDCNGSGASK-GSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------------SNPCKTCGGQGLQEKRR 219 (372)
T ss_pred CCCcCCCcCC-CCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------------cccCCCCCCCcEEecce
Confidence 4567776552 234568999999996531 236899999999875 57899999999986533
Q ss_pred CC----------------------CCC--CCCceEEEE--------------------------------------cEEE
Q 016758 171 DR----------------------CPQ--CKGEKVIQE--------------------------------------KKVL 188 (383)
Q Consensus 171 ~~----------------------C~~--C~G~g~~~~--------------------------------------~~~l 188 (383)
.. ... -.|.-++.. .+.+
T Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i 299 (372)
T PRK14286 220 TINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKA 299 (372)
T ss_pred EEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEE
Confidence 22 111 111111111 1468
Q ss_pred EEEeccCcccCCEEEecCCcCCCCC-CCcccEEEEEEEeeCCcccccccccc
Q 016758 189 EVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLF 239 (383)
Q Consensus 189 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~vk~h~~f~R~g~dL~ 239 (383)
+|+||+|+++|++++|+|+|.+..+ ...|||||+|+|..+..+..+...|+
T Consensus 300 ~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 351 (372)
T PRK14286 300 KMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351 (372)
T ss_pred EEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999998543 45799999999998876555544433
No 58
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=2.2e-11 Score=122.06 Aligned_cols=128 Identities=22% Similarity=0.451 Sum_probs=89.4
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc-------C---ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|.... .-.....|+.|+|+|... + ...+|+.|+|+|..+ ..+|+.|+|+|.+
T Consensus 147 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 212 (376)
T PRK14280 147 DTCHGSGAK-PGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------------KEKCPTCHGKGKV 212 (376)
T ss_pred CCCCCcccC-CCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------------cCCCCCCCCceEE
Confidence 566777654 223457899999999643 1 236899999999875 6789999999987
Q ss_pred EcCCCC----------------------CC--CCCCceEEEE-------------------------------------c
Q 016758 167 INDKDR----------------------CP--QCKGEKVIQE-------------------------------------K 185 (383)
Q Consensus 167 ~~~~~~----------------------C~--~C~G~g~~~~-------------------------------------~ 185 (383)
...+.. .. .-.|.-++.- .
T Consensus 213 ~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 292 (376)
T PRK14280 213 RKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH 292 (376)
T ss_pred EEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCC
Confidence 543222 10 0111111111 1
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDL 238 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL 238 (383)
..++|+||+|+++|++++|+|+|.+.. +...|||||+|+|..+..++.+...|
T Consensus 293 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~ 346 (376)
T PRK14280 293 GKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKEL 346 (376)
T ss_pred ceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 458999999999999999999999854 34679999999999887555444333
No 59
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=1.1e-11 Score=124.40 Aligned_cols=129 Identities=23% Similarity=0.467 Sum_probs=89.8
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc-------C---ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
+.|.|...+-. .....|+.|+|+|... + ...+|+.|+|+|..+ ..+|+.|+|.|.+
T Consensus 150 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~~ 215 (380)
T PRK14276 150 HTCNGSGAKPG-TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------------KEPCQTCHGTGHE 215 (380)
T ss_pred CCCcCcccCCC-CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------------cCCCCCCCCceEE
Confidence 45777765522 3456899999999753 1 236899999999875 6789999999987
Q ss_pred EcCCCC----------------------CC--CCCCceEEEEc-------------------------------------
Q 016758 167 INDKDR----------------------CP--QCKGEKVIQEK------------------------------------- 185 (383)
Q Consensus 167 ~~~~~~----------------------C~--~C~G~g~~~~~------------------------------------- 185 (383)
...+.. .. .-.|.-++.-.
T Consensus 216 ~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld 295 (380)
T PRK14276 216 KQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVH 295 (380)
T ss_pred EEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCC
Confidence 542222 10 01111111110
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCCC-CCcccEEEEEEEeeCCcccccccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGDDLF 239 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~vk~h~~f~R~g~dL~ 239 (383)
..++|.||+|+++|++++|+|+|++.++ ..+|||||+|++..+..+..+...|+
T Consensus 296 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l 350 (380)
T PRK14276 296 GDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEAL 350 (380)
T ss_pred CcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 3479999999999999999999998653 46799999999998876554444333
No 60
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=1.9e-11 Score=123.19 Aligned_cols=124 Identities=19% Similarity=0.363 Sum_probs=87.8
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|...+-. ....|+.|+|+|.... ...+|+.|+|+|..+ ..+|+.|+|+|.+
T Consensus 167 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 231 (397)
T PRK14281 167 KECNGTGSKTG--ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------------KDRCPACYGEGIK 231 (397)
T ss_pred CCCCCcccCCC--CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------------CCCCCCCCCCccE
Confidence 45677765532 4578999999997531 236899999999875 5789999999998
Q ss_pred EcCCCC---------------------C-CC--------------------------------------CCCceEEE-Ec
Q 016758 167 INDKDR---------------------C-PQ--------------------------------------CKGEKVIQ-EK 185 (383)
Q Consensus 167 ~~~~~~---------------------C-~~--------------------------------------C~G~g~~~-~~ 185 (383)
...+.. . .. +.+...+. -.
T Consensus 232 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 311 (397)
T PRK14281 232 QGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLD 311 (397)
T ss_pred ecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCC
Confidence 654322 0 00 00111111 01
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCcccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKG 235 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g 235 (383)
..++|+||+|+++|++++|+|+|.+.+ +...|||||+|+|.-+..+..+.
T Consensus 312 g~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~q 362 (397)
T PRK14281 312 GAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQD 362 (397)
T ss_pred ccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHH
Confidence 448999999999999999999999854 34579999999999887544443
No 61
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=1.6e-11 Score=122.81 Aligned_cols=132 Identities=19% Similarity=0.420 Sum_probs=94.2
Q ss_pred hhhcccceeeecceeeeeCCCCCCCCcccC----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeE
Q 016758 96 EDLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 165 (383)
Q Consensus 96 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 165 (383)
-+.|+|+...........|+.|+|+|.... ...+|+.|+|+|..+ ..+|..|.|+|.
T Consensus 142 C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~ 208 (371)
T PRK14292 142 CEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------TDPCTVCRGRGR 208 (371)
T ss_pred CCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------CCCCCCCCCceE
Confidence 367788877654445688999999997541 125899999999864 688999999998
Q ss_pred EEcCCCC----------------------CCCCCCceEEEE-------------------------------------cE
Q 016758 166 TINDKDR----------------------CPQCKGEKVIQE-------------------------------------KK 186 (383)
Q Consensus 166 ~~~~~~~----------------------C~~C~G~g~~~~-------------------------------------~~ 186 (383)
+...+.. -..-.|.=++.. ..
T Consensus 209 v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG 288 (371)
T PRK14292 209 TLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDG 288 (371)
T ss_pred EeecceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCC
Confidence 7653322 000001111110 13
Q ss_pred EEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccccccc
Q 016758 187 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLFV 240 (383)
Q Consensus 187 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~~ 240 (383)
..+|.||+|+++|++++|+|+|++.+ +..+|||||+|.++.|+.|..+...|+-
T Consensus 289 ~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 289 PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999999999854 4568999999999999877766655443
No 62
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.1e-12 Score=125.62 Aligned_cols=44 Identities=52% Similarity=0.944 Sum_probs=43.0
Q ss_pred ccCCCCCCCHHHHH--------------------------HHHHHHHHHHhcCCccccchhcccCchhhc
Q 016758 3 FSESRKNASQDDLK--------------------------KFKELAQAYEVLSDPEKREIYDQYGEDALK 46 (383)
Q Consensus 3 iLGV~~~As~~EIK--------------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~ 46 (383)
+|+|+|+||++||| +|+.|.+||||||||.||++||.||+.||+
T Consensus 14 ~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 14 LLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred HhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 79999999999999 899999999999999999999999999997
No 63
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=4.2e-11 Score=119.75 Aligned_cols=129 Identities=21% Similarity=0.415 Sum_probs=88.8
Q ss_pred hhhcccceeeecceeeeeCCCCCCCCcccC----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeE
Q 016758 96 EDLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 165 (383)
Q Consensus 96 ee~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 165 (383)
-..|.|+..+-. .....|+.|+|+|.... ...+|+.|+|+|..+ ..+|+.|+|.|.
T Consensus 152 C~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~ 217 (372)
T PRK14296 152 CSKCFGSGAESN-SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-------------KNKCKNCKGKGK 217 (372)
T ss_pred cCCCCCCccCCC-CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-------------cccccCCCCceE
Confidence 356777766532 34578999999997542 235899999999875 678999999998
Q ss_pred EEcCCCC----------------------CCCC--CCceEEE--------------------------------------
Q 016758 166 TINDKDR----------------------CPQC--KGEKVIQ-------------------------------------- 183 (383)
Q Consensus 166 ~~~~~~~----------------------C~~C--~G~g~~~-------------------------------------- 183 (383)
+...+.. ...- .|.=++.
T Consensus 218 v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~t 297 (372)
T PRK14296 218 YLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKT 297 (372)
T ss_pred EEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeC
Confidence 6543222 0000 0110000
Q ss_pred EcEEEEEEeccCcccCCEEEecCCcCCCC--CCCcccEEEEEEEeeCCccccccccc
Q 016758 184 EKKVLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKGDDL 238 (383)
Q Consensus 184 ~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~--~~~~GDliv~i~vk~h~~f~R~g~dL 238 (383)
-...++|+||+++++|++++|+|+|.+.. ....|||||+|+|.-+..+..+...|
T Consensus 298 ldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 354 (372)
T PRK14296 298 LDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKEL 354 (372)
T ss_pred CCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 00348999999999999999999999732 33579999999999887655444333
No 64
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=4.2e-11 Score=120.20 Aligned_cols=126 Identities=25% Similarity=0.465 Sum_probs=86.8
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc-------C---ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|.... .-.....|+.|+|+|... + ...+|+.|+|+|..+ ..+|..|+|.|.+
T Consensus 152 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 217 (380)
T PRK14297 152 ETCNGTGAK-PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-------------EDPCNKCHGKGKV 217 (380)
T ss_pred CCccccccc-CCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-------------CCCCCCCCCCeEE
Confidence 456776655 223357899999999653 1 236899999999865 5789999999975
Q ss_pred EcCCCC-----CCCCC-------------------CceEEE-------------------------------------Ec
Q 016758 167 INDKDR-----CPQCK-------------------GEKVIQ-------------------------------------EK 185 (383)
Q Consensus 167 ~~~~~~-----C~~C~-------------------G~g~~~-------------------------------------~~ 185 (383)
...+.. =..-. |.=++. -.
T Consensus 218 ~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ld 297 (380)
T PRK14297 218 RKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297 (380)
T ss_pred EeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCC
Confidence 432221 00000 010000 01
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGD 236 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~ 236 (383)
..++|.||+|+++|++++|+|+|.+.. +...|||||+|+|.-+..+..+..
T Consensus 298 g~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~ 349 (380)
T PRK14297 298 GEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQK 349 (380)
T ss_pred CcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHH
Confidence 458999999999999999999999854 345799999999998875544443
No 65
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.20 E-value=7e-11 Score=119.62 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=84.2
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc-----C-----ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS-----G-----ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~-----~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|+|+..+- .....|+.|+|+|... + ...+|+.|+|+|..+. ...+|+.|+|+|.+
T Consensus 154 ~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~-----------~~~~C~~C~G~g~v 220 (421)
T PTZ00037 154 ANCEGHGGPK--DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP-----------ESKKCKNCSGKGVK 220 (421)
T ss_pred cccCCCCCCC--CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc-----------ccccCCcCCCccee
Confidence 5677777542 3467899999999642 1 2368999999998752 24789999999988
Q ss_pred EcCCCC-----CCC------------------------------------------------------CCCceEEE--Ec
Q 016758 167 INDKDR-----CPQ------------------------------------------------------CKGEKVIQ--EK 185 (383)
Q Consensus 167 ~~~~~~-----C~~------------------------------------------------------C~G~g~~~--~~ 185 (383)
...+.. =.. |.+.-.+. ..
T Consensus 221 ~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG 300 (421)
T PTZ00037 221 KTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDG 300 (421)
T ss_pred eeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCC
Confidence 653322 000 00110000 01
Q ss_pred EEEEEEeccC--cccCCEEEecCCcCCCCC--CCcccEEEEEEEeeC
Q 016758 186 KVLEVIVEKG--MQNGQKITFPGEADEAPD--TVTGDIVFVLQQKEH 228 (383)
Q Consensus 186 ~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~--~~~GDliv~i~vk~h 228 (383)
+.|+|+||+| +++|++++|+|+|.+..+ ...|||||+|+|.-+
T Consensus 301 ~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P 347 (421)
T PTZ00037 301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFP 347 (421)
T ss_pred CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcC
Confidence 5689999999 999999999999998533 357999999999987
No 66
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.9e-11 Score=121.56 Aligned_cols=124 Identities=20% Similarity=0.418 Sum_probs=86.6
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|.|.... .-.....|+.|+|+|.... ...+|+.|+|+|+.+ ...|+.|+|+|.+
T Consensus 158 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 223 (386)
T PRK14289 158 SHCHGTGAE-GNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------KKKCKKCGGEGIV 223 (386)
T ss_pred CCCCCCCCC-CCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------CcCCCCCCCCcEE
Confidence 455666554 2344578999999997641 136899999999865 5789999999987
Q ss_pred EcCCCC----------------------CCC--CCCc------------------------------------eEEEE-c
Q 016758 167 INDKDR----------------------CPQ--CKGE------------------------------------KVIQE-K 185 (383)
Q Consensus 167 ~~~~~~----------------------C~~--C~G~------------------------------------g~~~~-~ 185 (383)
...+.. ... =.|. ..+.. .
T Consensus 224 ~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ld 303 (386)
T PRK14289 224 YGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTID 303 (386)
T ss_pred eeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCC
Confidence 653222 000 0011 11110 1
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRK 234 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~ 234 (383)
..++|.||+|+++|++++|+|+|.+.+ +...|||||+|+++-+..+..+
T Consensus 304 g~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~ 353 (386)
T PRK14289 304 GKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKE 353 (386)
T ss_pred ceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHH
Confidence 458999999999999999999999854 3468999999999987644433
No 67
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=1.2e-10 Score=116.95 Aligned_cols=129 Identities=23% Similarity=0.439 Sum_probs=89.2
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc-------C---ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEE
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS-------G---ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGET 166 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~-------~---~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 166 (383)
..|+|....- -.....|+.|+|+|... + ...+|+.|+|+|+.+ ..+|..|+|+|.+
T Consensus 150 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------~~~C~~C~G~g~v 215 (378)
T PRK14283 150 PVCNGSRAEP-GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------------EKPCSNCHGKGVV 215 (378)
T ss_pred CCCCccccCC-CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------------CCCCCCCCCceee
Confidence 4678876552 23456799999999853 1 236899999999865 5789999999987
Q ss_pred EcCCCC----------------------CCC--CCCc------------------------------------eEEE-Ec
Q 016758 167 INDKDR----------------------CPQ--CKGE------------------------------------KVIQ-EK 185 (383)
Q Consensus 167 ~~~~~~----------------------C~~--C~G~------------------------------------g~~~-~~ 185 (383)
...+.. ... =.|. ..+. -.
T Consensus 216 ~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tld 295 (378)
T PRK14283 216 RETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTID 295 (378)
T ss_pred ccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCC
Confidence 553222 000 0011 1111 11
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCC-CCCcccEEEEEEEeeCCcccccccccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGDDLF 239 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~vk~h~~f~R~g~dL~ 239 (383)
..++|.||+|+++|++++|+|+|.+.. +...|||||+|++.-+...+.+...|+
T Consensus 296 G~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll 350 (378)
T PRK14283 296 GPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELL 350 (378)
T ss_pred ceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 368999999999999999999999854 346799999999998865544443333
No 68
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.15 E-value=1.8e-11 Score=130.79 Aligned_cols=60 Identities=25% Similarity=0.487 Sum_probs=49.9
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCCCCCCCcc
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPF 59 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~~~~~~~~ 59 (383)
+||||+++||.+||| +|++|++||+|||||.+|+.||+||..|+... +..||.
T Consensus 577 dILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~-----~~iDP~ 651 (1136)
T PTZ00341 577 DILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGV-----NFIHPS 651 (1136)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCC-----CccCHH
Confidence 589999999999999 89999999999999999999999999887532 334555
Q ss_pred chhhcccC
Q 016758 60 DIFQSFFG 67 (383)
Q Consensus 60 d~F~~~Fg 67 (383)
-+| .+||
T Consensus 652 ~Ff-mlFg 658 (1136)
T PTZ00341 652 IFY-LLAS 658 (1136)
T ss_pred HHH-HHhh
Confidence 444 4555
No 69
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=1.1e-10 Score=117.36 Aligned_cols=118 Identities=26% Similarity=0.498 Sum_probs=83.3
Q ss_pred hhcccceeeecceeeeeCCCCCCCCcccC------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKSG------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
..|+|...+ .-.....|+.|+|+|.... ...+|+.|+|+|. + ..+|+.|+|.|.+...+
T Consensus 160 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~-------------~~~C~~C~G~g~v~~~~ 224 (382)
T PRK14291 160 EACGGTGYD-PGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-L-------------REPCSKCNGRGLVIKKE 224 (382)
T ss_pred CCCccccCC-CCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-E-------------ccCCCCCCCCceEEeee
Confidence 456676655 2334578999999997531 2368999999994 3 56899999999876532
Q ss_pred CC-----CCCCC------------------------------------------------------C-ceEEE--EcEEE
Q 016758 171 DR-----CPQCK------------------------------------------------------G-EKVIQ--EKKVL 188 (383)
Q Consensus 171 ~~-----C~~C~------------------------------------------------------G-~g~~~--~~~~l 188 (383)
.. =..-. | ...+. ....+
T Consensus 225 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l 304 (382)
T PRK14291 225 TIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKE 304 (382)
T ss_pred EEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEE
Confidence 22 00000 1 11111 11568
Q ss_pred EEEeccCcccCCEEEecCCcCCCCC-CCcccEEEEEEEeeCC
Q 016758 189 EVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHP 229 (383)
Q Consensus 189 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~vk~h~ 229 (383)
+|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|.-+.
T Consensus 305 ~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 305 KVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 9999999999999999999998653 4679999999999875
No 70
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.7e-11 Score=112.86 Aligned_cols=45 Identities=51% Similarity=0.854 Sum_probs=43.0
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhc
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALK 46 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~ 46 (383)
+|||++++||.++|| ||+|||.||+|||||.||.+||.||+.++.
T Consensus 35 dVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 35 DVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred HHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 589999999999999 999999999999999999999999988775
No 71
>PHA03102 Small T antigen; Reviewed
Probab=99.01 E-value=1.6e-10 Score=100.83 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=52.9
Q ss_pred CcccCCCCCC--CHHHHH-------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCCCCCCCcc
Q 016758 1 MRFSESRKNA--SQDDLK-------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDPF 59 (383)
Q Consensus 1 ~~iLGV~~~A--s~~EIK-------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~~~~~~~~ 59 (383)
|+||||+++| |.+||| +|++|++||++|+|+.+|..||.+|....... ...+.
T Consensus 8 ~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~------~~~~~ 81 (153)
T PHA03102 8 MDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE------EDVPS 81 (153)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccccc------cccHH
Confidence 5799999999 999999 89999999999999999999999997764321 12377
Q ss_pred chhhcccCC
Q 016758 60 DIFQSFFGG 68 (383)
Q Consensus 60 d~F~~~Fgg 68 (383)
++|.++||+
T Consensus 82 ~~f~~~fg~ 90 (153)
T PHA03102 82 GYVGATFGD 90 (153)
T ss_pred HHhhhhcCC
Confidence 889888874
No 72
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.1e-09 Score=96.97 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=44.8
Q ss_pred EEeccCcccCCEEEecCCcCCCCCCCcccEEEEEEEeeCCccccccccc
Q 016758 190 VIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDL 238 (383)
Q Consensus 190 V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv~i~vk~h~~f~R~g~dL 238 (383)
+.++.++..+..+++.+.+...+ ...++.+..+..++|+.|...++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 180 STIKAGALEGKALRLKGLLKSAR-GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred ccCCcccccCceeeecccCCcCC-CCcccceeeeeccCCCCccccCCcc
Confidence 78999999999999999997766 7789999999999999999999999
No 73
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.89 E-value=3.3e-09 Score=87.49 Aligned_cols=61 Identities=28% Similarity=0.646 Sum_probs=50.3
Q ss_pred eeeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEE
Q 016758 110 RNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQE 184 (383)
Q Consensus 110 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~ 184 (383)
-.+.|..|+|+|.. +|+.|+|+|++...+ ++ +++++.+|+.|+|+|++ .|+.|+|++++..
T Consensus 40 ~~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence 35789999999983 899999999987433 43 35788999999999974 4999999998764
No 74
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=6.2e-09 Score=100.95 Aligned_cols=73 Identities=30% Similarity=0.415 Sum_probs=65.5
Q ss_pred cccccccccccccCCHHHHhCCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCC
Q 016758 231 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPE 310 (383)
Q Consensus 231 f~R~g~dL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~ 310 (383)
+.|+|.||++++.|||.||++|+++.| +++|+.+.|.|||| +++|+.++++|+|++. |||||+|+|.-++
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~ 194 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP 194 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence 457899999999999999999999998 68998899999999 7999999999999862 9999999998666
Q ss_pred CCC
Q 016758 311 SLS 313 (383)
Q Consensus 311 ~l~ 313 (383)
.+.
T Consensus 195 ~f~ 197 (291)
T PRK14299 195 VFR 197 (291)
T ss_pred CeE
Confidence 533
No 75
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-09 Score=105.00 Aligned_cols=62 Identities=37% Similarity=0.597 Sum_probs=53.4
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCCCCCCCc
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHDP 58 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~~~~~~~ 58 (383)
+||||+.+||++||| +|+++++||+||+|+++|+.||.+|..+... .+..++
T Consensus 9 ~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~-----~~~~d~ 83 (296)
T KOG0691|consen 9 DLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA-----QGREDQ 83 (296)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc-----hhhhhH
Confidence 589999999999999 9999999999999999999999999766532 134577
Q ss_pred cchhhcccCC
Q 016758 59 FDIFQSFFGG 68 (383)
Q Consensus 59 ~d~F~~~Fgg 68 (383)
.++|...|++
T Consensus 84 ~~~~r~~f~~ 93 (296)
T KOG0691|consen 84 ADGFRKKFGS 93 (296)
T ss_pred HHHHHHHhhh
Confidence 7888888874
No 76
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.81 E-value=2.2e-09 Score=112.78 Aligned_cols=92 Identities=12% Similarity=-0.041 Sum_probs=67.7
Q ss_pred ccccccccccccccCCHHHHhCCCEEEEEc----c--CC-------CEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCCC
Q 016758 230 KFKRKGDDLFVEHTLSLTEALCGFQFVITH----L--DG-------RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFM 296 (383)
Q Consensus 230 ~f~R~g~dL~~~~~I~l~eAl~G~~~~i~t----l--dG-------~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~ 296 (383)
.|-...-||.+.+.|+|.+++.|++..|+. + +| +.|.|.||+| ++.|+.++++|+|=... +.
T Consensus 651 ~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpG--VkdGqkIRf~GeGDegp---gg 725 (871)
T TIGR03835 651 NLDETNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPIT--SQLNISAIFKGFGHDFG---NG 725 (871)
T ss_pred CccccccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCC--CCCCCEEEeccccCCCC---CC
Confidence 344455689999999999999999988832 2 22 3689999999 79999999999998642 23
Q ss_pred CCceEEEEEEeCCCCCCH--------HHHHHHHhhCCC
Q 016758 297 RGKLYIHFTVDFPESLSP--------DQCKMLETVLPP 326 (383)
Q Consensus 297 ~GdL~i~f~V~~P~~l~~--------~~~~~l~~~lp~ 326 (383)
.|||||.|.|.-...+.. -.+.+.+.+|..
T Consensus 726 ~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGg 763 (871)
T TIGR03835 726 CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGG 763 (871)
T ss_pred CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCC
Confidence 499999999985554332 234555555553
No 77
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.76 E-value=3.7e-09 Score=78.85 Aligned_cols=37 Identities=43% Similarity=0.768 Sum_probs=35.9
Q ss_pred cccCCCCCCCHHHHH------------------------HHHHHHHHHHhcCCccccchhc
Q 016758 2 RFSESRKNASQDDLK------------------------KFKELAQAYEVLSDPEKREIYD 38 (383)
Q Consensus 2 ~iLGV~~~As~~EIK------------------------kFkeI~~AYevLsD~~kR~~YD 38 (383)
+||||+++||.+||| +|++|++||++|+||.+|+.||
T Consensus 4 ~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 4 EILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999999999 7999999999999999999998
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=8.6e-09 Score=99.45 Aligned_cols=44 Identities=48% Similarity=0.783 Sum_probs=40.2
Q ss_pred cccCCCCCCCHHHHH--------------------------HHHHHHHHHHhcCCccccchhcccCchhhc
Q 016758 2 RFSESRKNASQDDLK--------------------------KFKELAQAYEVLSDPEKREIYDQYGEDALK 46 (383)
Q Consensus 2 ~iLGV~~~As~~EIK--------------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~ 46 (383)
+||||.++||..||- ||-.|..|-||||||+||+.||+ |++.+.
T Consensus 398 KILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 398 KILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred HHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 699999999999997 89999999999999999999998 666554
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.2e-08 Score=100.49 Aligned_cols=61 Identities=49% Similarity=0.874 Sum_probs=50.0
Q ss_pred cccCCCCCCCHHHHH------------------------HHHHHHHHHHhcCCccccchhcccCchhhccCcCCCCCCCC
Q 016758 2 RFSESRKNASQDDLK------------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGAHD 57 (383)
Q Consensus 2 ~iLGV~~~As~~EIK------------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~g~~~~~~~~~ 57 (383)
+||||+++||++||| +|+||-+||.|||||.||..||. |.+ +...+ +++++++
T Consensus 377 kilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~~-~~~a~~d 453 (486)
T KOG0550|consen 377 KILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEVG-SGGAGFD 453 (486)
T ss_pred HHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhhc-CCCcCcC
Confidence 589999999999999 99999999999999999999998 322 22221 2336688
Q ss_pred ccchhhcc
Q 016758 58 PFDIFQSF 65 (383)
Q Consensus 58 ~~d~F~~~ 65 (383)
|+++|..|
T Consensus 454 p~~~~~a~ 461 (486)
T KOG0550|consen 454 PFNIFRAF 461 (486)
T ss_pred hhhhhhhc
Confidence 99998887
No 80
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1e-08 Score=101.83 Aligned_cols=46 Identities=37% Similarity=0.647 Sum_probs=42.4
Q ss_pred cccCCCCCCCHHHHH------------------------HHHHHHHHHHhcCCccccchhcccCchhhcc
Q 016758 2 RFSESRKNASQDDLK------------------------KFKELAQAYEVLSDPEKREIYDQYGEDALKE 47 (383)
Q Consensus 2 ~iLGV~~~As~~EIK------------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~~~~ 47 (383)
+||||.++|+++||| +|+.|++||||||||..|+-||..-+.-|.+
T Consensus 12 E~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~ 81 (508)
T KOG0717|consen 12 EVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG 81 (508)
T ss_pred HHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence 699999999999999 8999999999999999999999987766653
No 81
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.64 E-value=6.7e-08 Score=94.39 Aligned_cols=75 Identities=24% Similarity=0.368 Sum_probs=62.5
Q ss_pred cccccccccccCCHHHHhCCCEEEE----EccC--C-------CEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCCCCCc
Q 016758 233 RKGDDLFVEHTLSLTEALCGFQFVI----THLD--G-------RQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGK 299 (383)
Q Consensus 233 R~g~dL~~~~~I~l~eAl~G~~~~i----~tld--G-------~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~Gd 299 (383)
++|.||++++.|+|.||+.|+...| ++++ | +.+.|.|||| +++|++++++|+|+|..+ ...+||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~-~~~~GD 191 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGEN-GGPNGD 191 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCCC-CCCCcc
Confidence 5689999999999999999995544 4454 3 4689999999 799999999999999653 345899
Q ss_pred eEEEEEEeCCCC
Q 016758 300 LYIHFTVDFPES 311 (383)
Q Consensus 300 L~i~f~V~~P~~ 311 (383)
|||+|+|. |..
T Consensus 192 l~v~i~v~-ph~ 202 (306)
T PRK10266 192 LWLVIHIA-PHP 202 (306)
T ss_pred EEEEEEEc-CCC
Confidence 99999999 654
No 82
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.6e-08 Score=92.40 Aligned_cols=41 Identities=37% Similarity=0.758 Sum_probs=39.3
Q ss_pred cccCCCCCCCHHHHH-------------------------HHHHHHHHHHhcCCccccchhcccCc
Q 016758 2 RFSESRKNASQDDLK-------------------------KFKELAQAYEVLSDPEKREIYDQYGE 42 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-------------------------kFkeI~~AYevLsD~~kR~~YD~~G~ 42 (383)
+||||.++||+.||+ +|+.++.||.||||++||++||+-|.
T Consensus 18 evLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 18 EVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred HHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 589999999999999 99999999999999999999999874
No 83
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.51 E-value=1.4e-07 Score=73.96 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=36.5
Q ss_pred EEEEEEeccCcccCCEEEecCCcCCCC-CC-CcccEEEEEEEeeCCcccc
Q 016758 186 KVLEVIVEKGMQNGQKITFPGEADEAP-DT-VTGDIVFVLQQKEHPKFKR 233 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~-~~GDliv~i~vk~h~~f~R 233 (383)
+.++|.||+|+++|+.++++|+|.+.. +. ..|||||+|++.-+..++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 467899999999999999999999743 33 6999999999997776653
No 84
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.7e-07 Score=88.97 Aligned_cols=106 Identities=23% Similarity=0.496 Sum_probs=82.0
Q ss_pred eCCCCCCCCcccC-----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCC---------
Q 016758 113 ICTKCKGKGSKSG-----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR--------- 172 (383)
Q Consensus 113 ~C~~C~G~G~~~~-----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~--------- 172 (383)
.|+.|.|+|.... ....|..|+|+|..+ .....|+.|.|++++...+..
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~-----------~~kd~C~~C~G~~~v~~kkil~v~V~~g~~ 213 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI-----------SLKDRCKTCSGAKVVREKKILEVHVEPGMP 213 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCccccc-----------cccccCcccccchhhhhhheeeccccCCCc
Confidence 7999999998752 236799999999864 237899999999987653332
Q ss_pred --------------------------------------------------CCCCCCceEEE--EcEEEEEEeccC--ccc
Q 016758 173 --------------------------------------------------CPQCKGEKVIQ--EKKVLEVIVEKG--MQN 198 (383)
Q Consensus 173 --------------------------------------------------C~~C~G~g~~~--~~~~l~V~Ip~G--~~~ 198 (383)
=..|.+..++. ..+.|++.++|| +.+
T Consensus 214 ~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~ 293 (337)
T KOG0712|consen 214 HGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISP 293 (337)
T ss_pred ccceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeCh
Confidence 12333333333 337899999999 999
Q ss_pred CCEEEecCCcCCCCCCCcccEEEEEEEeeCC
Q 016758 199 GQKITFPGEADEAPDTVTGDIVFVLQQKEHP 229 (383)
Q Consensus 199 G~~i~~~g~G~~~~~~~~GDliv~i~vk~h~ 229 (383)
|+++++.|+|++..+...|||||.+.|+.++
T Consensus 294 ~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 294 GDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred hHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 9999999999996555599999999999887
No 85
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.32 E-value=8.8e-07 Score=79.80 Aligned_cols=51 Identities=22% Similarity=0.454 Sum_probs=46.5
Q ss_pred eccCCCCcceeEEEcCCCCCCCCCCceEEEEcEEEEEEeccCcccCCEEEec
Q 016758 154 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFP 205 (383)
Q Consensus 154 ~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ 205 (383)
+.+|+.|+|+|+++..+++|+.|+|.|.+..+..+.+++ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 568999999999888778999999999999999999999 999999999885
No 86
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2e-06 Score=78.27 Aligned_cols=43 Identities=30% Similarity=0.574 Sum_probs=40.4
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCCccccchhcccCchh
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSDPEKREIYDQYGEDA 44 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~ 44 (383)
|||||+++||++||| .|..|+.||+.|+|++.|+.|-.||+..
T Consensus 103 EILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 103 EILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 799999999999999 6889999999999999999999999753
No 87
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.08 E-value=3.4e-06 Score=61.70 Aligned_cols=32 Identities=56% Similarity=0.850 Sum_probs=29.8
Q ss_pred cccCCCCCCCHHHHH------------------------HHHHHHHHHHhcCCccc
Q 016758 2 RFSESRKNASQDDLK------------------------KFKELAQAYEVLSDPEK 33 (383)
Q Consensus 2 ~iLGV~~~As~~EIK------------------------kFkeI~~AYevLsD~~k 33 (383)
+||||+++||.+||| .|++|++||++|+||.+
T Consensus 5 ~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 5 EILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 689999999999998 79999999999999864
No 88
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=97.90 E-value=8.5e-06 Score=72.96 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=34.3
Q ss_pred cccCCCCC--CCHHHHH----------------------------HHHHHHHHHHhcCCccccchhcc
Q 016758 2 RFSESRKN--ASQDDLK----------------------------KFKELAQAYEVLSDPEKREIYDQ 39 (383)
Q Consensus 2 ~iLGV~~~--As~~EIK----------------------------kFkeI~~AYevLsD~~kR~~YD~ 39 (383)
++|||+++ ++.++|| +|++||+||+||+||.+|+.|+-
T Consensus 5 ~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 5 TLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 58999996 6788998 67899999999999999999984
No 89
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.87 E-value=8.9e-06 Score=83.30 Aligned_cols=27 Identities=33% Similarity=0.849 Sum_probs=14.5
Q ss_pred eCCCCCCCCcccCceeeCCCCcccceE
Q 016758 113 ICTKCKGKGSKSGASMKCSGCQGSGMK 139 (383)
Q Consensus 113 ~C~~C~G~G~~~~~~~~C~~C~G~G~~ 139 (383)
.|+.|+|+|...-....|+.|+|+|+.
T Consensus 4 ~C~~C~g~G~i~v~~e~c~vc~gtG~~ 30 (715)
T COG1107 4 KCPECGGKGKIVVGEEECPVCHGTGFS 30 (715)
T ss_pred cccccCCCceEeeeeeecccccccccc
Confidence 455555555544444455555555554
No 90
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.84 E-value=9e-06 Score=61.19 Aligned_cols=53 Identities=34% Similarity=0.831 Sum_probs=34.8
Q ss_pred cccceeeecceeeeeCCCCCCCCcccC----------ceeeCCCCcccceEEEEEecCCcceeeeeccCCCCccee
Q 016758 99 YNGTSKKLSLSRNVICTKCKGKGSKSG----------ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG 164 (383)
Q Consensus 99 ~~G~~~~i~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G 164 (383)
++|...+ .-.....|+.|+|+|.... ...+|+.|+|+|.++ ...+|+.|+|.|
T Consensus 4 C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i------------~~~~C~~C~G~g 66 (66)
T PF00684_consen 4 CNGTGAK-PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII------------EKDPCKTCKGSG 66 (66)
T ss_dssp CTTTSB--STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-------------TSSB-SSSTTSS
T ss_pred CCCcccC-CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE------------CCCCCCCCCCcC
Confidence 4454443 2344578999999998742 236899999999864 268999999986
No 91
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=97.82 E-value=1.9e-05 Score=56.60 Aligned_cols=29 Identities=48% Similarity=0.732 Sum_probs=27.4
Q ss_pred cccCCCCCCCHHHHH-----------------------HHHHHHHHHHhcCC
Q 016758 2 RFSESRKNASQDDLK-----------------------KFKELAQAYEVLSD 30 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-----------------------kFkeI~~AYevLsD 30 (383)
++|||+++||.++|| .|++|++||++|+|
T Consensus 4 ~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 4 DILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999 78999999999997
No 92
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=97.77 E-value=1.7e-05 Score=70.66 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=34.2
Q ss_pred cccCCCCC--CCHHHHH--------------------------HHHHHHHHHHhcCCccccchhcc
Q 016758 2 RFSESRKN--ASQDDLK--------------------------KFKELAQAYEVLSDPEKREIYDQ 39 (383)
Q Consensus 2 ~iLGV~~~--As~~EIK--------------------------kFkeI~~AYevLsD~~kR~~YD~ 39 (383)
++|||+++ +|.++|| .|..||+||+||+||.+|+.|+.
T Consensus 6 ~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 6 QLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 58999997 7899999 35699999999999999999985
No 93
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.8e-05 Score=79.17 Aligned_cols=39 Identities=38% Similarity=0.496 Sum_probs=37.0
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhccc
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQY 40 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~ 40 (383)
.+|||++++|+++|| .||.+..|||||+|++||+.||.-
T Consensus 239 svlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 239 SALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 479999999999999 799999999999999999999983
No 94
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.48 E-value=8.4e-05 Score=66.84 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=35.3
Q ss_pred cccCCCCC--CCHHHHH----------------------------HHHHHHHHHHhcCCccccchhcc--cCc
Q 016758 2 RFSESRKN--ASQDDLK----------------------------KFKELAQAYEVLSDPEKREIYDQ--YGE 42 (383)
Q Consensus 2 ~iLGV~~~--As~~EIK----------------------------kFkeI~~AYevLsD~~kR~~YD~--~G~ 42 (383)
++|||+++ ++.++|| +++.||+||++|+||.+|+.|+. .|.
T Consensus 10 ~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 10 SLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 58999996 6788998 46899999999999999999995 454
No 95
>PHA02624 large T antigen; Provisional
Probab=97.46 E-value=6.7e-05 Score=78.56 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=35.6
Q ss_pred CcccCCCCCC--CHHHHH-------------------HHHHHHHHHHhcCCccccchh
Q 016758 1 MRFSESRKNA--SQDDLK-------------------KFKELAQAYEVLSDPEKREIY 37 (383)
Q Consensus 1 ~~iLGV~~~A--s~~EIK-------------------kFkeI~~AYevLsD~~kR~~Y 37 (383)
+++|||+++| |.+||| +||+|++||++|+|+.+|..|
T Consensus 14 yelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 14 MDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 4799999999 999999 899999999999999999999
No 96
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=97.45 E-value=9.6e-05 Score=66.23 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=33.3
Q ss_pred cccCCCCC--CCHHHHH----------------------------HHHHHHHHHHhcCCccccchhcc
Q 016758 2 RFSESRKN--ASQDDLK----------------------------KFKELAQAYEVLSDPEKREIYDQ 39 (383)
Q Consensus 2 ~iLGV~~~--As~~EIK----------------------------kFkeI~~AYevLsD~~kR~~YD~ 39 (383)
++|||++. .+.++|+ +|+.||+||+||+||.+|+.|+.
T Consensus 8 ~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 8 ALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred hhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 57888888 5568888 58899999999999999999995
No 97
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0002 Score=68.62 Aligned_cols=60 Identities=35% Similarity=0.899 Sum_probs=38.5
Q ss_pred eeeCCCCCCCCccc---Cceee-----------------CCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC
Q 016758 111 NVICTKCKGKGSKS---GASMK-----------------CSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 170 (383)
Q Consensus 111 ~~~C~~C~G~G~~~---~~~~~-----------------C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 170 (383)
...|+.|+|.|..+ +..+. |.-|+|+|. .+|++|.|+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~----------------~~C~tC~grG~----- 256 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI----------------KECHTCKGRGK----- 256 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc----------------ccCCcccCCCC-----
Confidence 46799999998532 12233 555555553 46777777764
Q ss_pred CCCCCCCCceEEEEcEEEEEE
Q 016758 171 DRCPQCKGEKVIQEKKVLEVI 191 (383)
Q Consensus 171 ~~C~~C~G~g~~~~~~~l~V~ 191 (383)
.+|.+|.|.|.+..-..+.|.
T Consensus 257 k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 257 KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cccccccCccceeeeEEEEEE
Confidence 578888888777666655554
No 98
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.00018 Score=71.85 Aligned_cols=43 Identities=33% Similarity=0.615 Sum_probs=40.5
Q ss_pred cccCCCCCCCHHHHH----------------------------HHHHHHHHHHhcCCccccchhcccCchh
Q 016758 2 RFSESRKNASQDDLK----------------------------KFKELAQAYEVLSDPEKREIYDQYGEDA 44 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------------kFkeI~~AYevLsD~~kR~~YD~~G~~~ 44 (383)
|||||+.++|+.||| ++++|+.||+.|+|...|+.|=.||...
T Consensus 102 EILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 102 EILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred HhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 799999999999999 8899999999999999999999999644
No 99
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0001 Score=68.71 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=37.0
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHHhcCCccccchhccc
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYEVLSDPEKREIYDQY 40 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYevLsD~~kR~~YD~~ 40 (383)
++|||+++|+.+||+ .|+.|.+|||+|.|.+.|..||-+
T Consensus 37 dVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 37 DVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred HHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 689999999999999 799999999999999999999964
No 100
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.14 E-value=0.00075 Score=55.90 Aligned_cols=49 Identities=33% Similarity=0.759 Sum_probs=37.6
Q ss_pred hhcccceeeecceeeeeCCCCCCCCccc----C-c--eeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEc
Q 016758 97 DLYNGTSKKLSLSRNVICTKCKGKGSKS----G-A--SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 168 (383)
Q Consensus 97 e~~~G~~~~i~~~r~~~C~~C~G~G~~~----~-~--~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 168 (383)
..+.|... ..|+.|+|+|... + . ..+|+.|+|+|.. .|+.|.|+|.+.+
T Consensus 45 ~~C~GsG~-------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~----------------~C~~C~G~G~~~~ 100 (111)
T PLN03165 45 FPCSGTGA-------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL----------------TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCC-------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee----------------eCCCCCCCEEEee
Confidence 45666665 2899999999753 1 1 3589999999952 4999999999865
No 101
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.00063 Score=70.12 Aligned_cols=56 Identities=29% Similarity=0.703 Sum_probs=40.1
Q ss_pred cccceeeecceeeeeCCCCCCCCcccC------------------c-eeeCCCCcccceEEEEEecCCcceeeeeccCCC
Q 016758 99 YNGTSKKLSLSRNVICTKCKGKGSKSG------------------A-SMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNE 159 (383)
Q Consensus 99 ~~G~~~~i~~~r~~~C~~C~G~G~~~~------------------~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~ 159 (383)
|.|+.+.. -....|+.|+|+|.... . ..+|+.|+|+|.+.. ..+|+.
T Consensus 8 C~g~G~i~--v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------~~~c~~ 73 (715)
T COG1107 8 CGGKGKIV--VGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------YDTCPE 73 (715)
T ss_pred cCCCceEe--eeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------Eeeccc
Confidence 55544442 23467999999997531 1 247999999998753 578999
Q ss_pred CcceeEEEc
Q 016758 160 CKGTGETIN 168 (383)
Q Consensus 160 C~G~G~~~~ 168 (383)
|.|+|++..
T Consensus 74 c~G~gkv~~ 82 (715)
T COG1107 74 CGGTGKVLT 82 (715)
T ss_pred CCCceeEEe
Confidence 999999865
No 102
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0032 Score=60.57 Aligned_cols=74 Identities=30% Similarity=0.754 Sum_probs=42.7
Q ss_pred hcccceeeeccee---eeeCCCCCCCCcccCceeeCCCCcccceEE--------EEEecC---CcceeeeeccCCCCcce
Q 016758 98 LYNGTSKKLSLSR---NVICTKCKGKGSKSGASMKCSGCQGSGMKV--------SIRHLG---PSMIQQMQHPCNECKGT 163 (383)
Q Consensus 98 ~~~G~~~~i~~~r---~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~--------~~~~~g---pg~~~~~~~~C~~C~G~ 163 (383)
++.|-...+.+.. ...|..|.|.|. ..|+.|+|.|.-. -..-.| |+ ......|..|+|+
T Consensus 171 mf~~~~~~~~vphs~~v~~ch~c~gRG~-----~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k--~gt~~~C~~C~G~ 243 (406)
T KOG2813|consen 171 MFSGVAHPAVVPHSMIVTFCHACLGRGA-----MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPK--IGTHDLCYMCHGR 243 (406)
T ss_pred cccccccceeccchHhhhhhhcccCCCc-----eeccCcCCCCccccccCcceecccccCCCCCC--CCccchhhhccCC
Confidence 3444444444433 246999999994 6899999999311 000111 00 0123457777777
Q ss_pred eEEEcCCCCCCCCCCceEEE
Q 016758 164 GETINDKDRCPQCKGEKVIQ 183 (383)
Q Consensus 164 G~~~~~~~~C~~C~G~g~~~ 183 (383)
|. ..|.+|+|+|...
T Consensus 244 G~-----~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 244 GI-----KECHTCKGRGKKP 258 (406)
T ss_pred Cc-----ccCCcccCCCCcc
Confidence 74 5677787776543
No 103
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.88 E-value=0.005 Score=55.68 Aligned_cols=30 Identities=37% Similarity=0.847 Sum_probs=16.4
Q ss_pred eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEc
Q 016758 128 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 168 (383)
Q Consensus 128 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 168 (383)
.+|+.|+|+|.++. ...+|+.|+|+|++..
T Consensus 100 ~~C~~C~G~G~~i~-----------~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 100 CKCPRCRGTGLIQR-----------RQRECDTCAGTGRFRP 129 (186)
T ss_pred CcCCCCCCeeEEec-----------CCCCCCCCCCccEEee
Confidence 45666666665441 1245666666666543
No 104
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=95.83 E-value=0.0044 Score=54.71 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCccccchhcc
Q 016758 17 KFKELAQAYEVLSDPEKREIYDQ 39 (383)
Q Consensus 17 kFkeI~~AYevLsD~~kR~~YD~ 39 (383)
+|+.||+||++|+||.+|+.|+.
T Consensus 38 ~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 38 QSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred HHHHHHHHHHHhCChhhhHHHHH
Confidence 89999999999999999999996
No 105
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.011 Score=55.76 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCccccchhccc
Q 016758 17 KFKELAQAYEVLSDPEKREIYDQY 40 (383)
Q Consensus 17 kFkeI~~AYevLsD~~kR~~YD~~ 40 (383)
-|+-|+.|||||+|+.+|..||.-
T Consensus 90 fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 90 FFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred HHHHHHHHHHHhccHHHHhhcccc
Confidence 699999999999999999999984
No 106
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=94.69 E-value=0.029 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCccccchhcc
Q 016758 19 KELAQAYEVLSDPEKREIYDQ 39 (383)
Q Consensus 19 keI~~AYevLsD~~kR~~YD~ 39 (383)
..||+||.+|+||-+|+.|=-
T Consensus 53 s~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 53 AEVNDALQILKDPILRAEAII 73 (173)
T ss_pred HHHHHHHHHHCChHHHHHHHH
Confidence 579999999999999998843
No 107
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=89.29 E-value=0.36 Score=40.36 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.0
Q ss_pred cccCCCCCCCHHHHH-HHHHHHHHH
Q 016758 2 RFSESRKNASQDDLK-KFKELAQAY 25 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-kFkeI~~AY 25 (383)
+||||+++||.+||| .|+++..+|
T Consensus 69 ~ILGv~~~As~~eIkkaYRrLa~~~ 93 (116)
T PTZ00100 69 KILNISPTASKERIREAHKQLMLRN 93 (116)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHh
Confidence 689999999999999 666666555
No 108
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.86 E-value=0.36 Score=42.13 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=14.3
Q ss_pred eeCCCCCCCCcccCceeeCCCCcccceEE
Q 016758 112 VICTKCKGKGSKSGASMKCSGCQGSGMKV 140 (383)
Q Consensus 112 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 140 (383)
..|..|.|.+. .+|..|+|+=+++
T Consensus 100 ~~C~~Cgg~rf-----v~C~~C~Gs~k~~ 123 (147)
T cd03031 100 GVCEGCGGARF-----VPCSECNGSCKVF 123 (147)
T ss_pred CCCCCCCCcCe-----EECCCCCCcceEE
Confidence 34777766653 4566666665544
No 109
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.91 E-value=0.43 Score=46.30 Aligned_cols=64 Identities=27% Similarity=0.558 Sum_probs=45.8
Q ss_pred hhhhcccceeeecceeeeeCCCCCCCCccc-----Cce-eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEc
Q 016758 95 LEDLYNGTSKKLSLSRNVICTKCKGKGSKS-----GAS-MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 168 (383)
Q Consensus 95 Lee~~~G~~~~i~~~r~~~C~~C~G~G~~~-----~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 168 (383)
..+.+.|...+ .......|..|.|+|... ... .+|..|+|.|.+. ...|..|.|.|.+..
T Consensus 166 ~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~-------------~~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 166 DCETCFGSGAE-EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL-------------RDNCQACSGAGQVRR 231 (288)
T ss_pred ccccccCcCcc-cccccccchhhhCcccccccccCCcceeecccccccceec-------------cchHHHhhcchhhhh
Confidence 44666777644 566778999999999332 122 3699999999875 344999999997766
Q ss_pred CCCC
Q 016758 169 DKDR 172 (383)
Q Consensus 169 ~~~~ 172 (383)
.++.
T Consensus 232 ~k~i 235 (288)
T KOG0715|consen 232 AKDI 235 (288)
T ss_pred heeE
Confidence 4443
No 110
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.47 E-value=1.2 Score=42.47 Aligned_cols=51 Identities=31% Similarity=0.678 Sum_probs=25.7
Q ss_pred eeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCC
Q 016758 112 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCK 177 (383)
Q Consensus 112 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 177 (383)
-.|..|.|.+. .+|..|+|+=++...- -.-+ .-.+|..|+-.|.+ +|+.|.
T Consensus 230 ~~C~~CGg~rF-----lpC~~C~GS~kv~~~~-~~~~----~~~rC~~CNENGLv-----rCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARF-----LPCSNCHGSCKVHEEE-EDDG----GVLRCLECNENGLV-----RCPVCS 280 (281)
T ss_pred CcCCCcCCcce-----EecCCCCCceeeeeec-cCCC----cEEECcccCCCCce-----eCCccC
Confidence 34666666543 4577777665544210 0001 12456666666653 466553
No 111
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.02 E-value=1.1 Score=42.74 Aligned_cols=40 Identities=28% Similarity=0.809 Sum_probs=32.1
Q ss_pred eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEc---CC---CCCCCCCCceEEE
Q 016758 128 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN---DK---DRCPQCKGEKVIQ 183 (383)
Q Consensus 128 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~---~~---~~C~~C~G~g~~~ 183 (383)
..|..|.|.+++ +|..|+|+-++.. .. .+|..|+-+|.+.
T Consensus 230 ~~C~~CGg~rFl----------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL----------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE----------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 469999998864 7999999999887 22 2499999888764
No 112
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.16 E-value=1 Score=50.54 Aligned_cols=33 Identities=33% Similarity=0.731 Sum_probs=18.8
Q ss_pred eCCCCcccceEEEEEecCCcceeeeeccCCCCcceeE
Q 016758 129 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 165 (383)
Q Consensus 129 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 165 (383)
.|+.|.|.|++....+.- -....+|+.|+|+++
T Consensus 738 ~C~~C~G~G~~~~~~~f~----~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFL----PDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEEccCC----CCcccCCCCcCCcee
Confidence 488888888765433322 223456666666554
No 113
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=80.29 E-value=0.69 Score=40.46 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCccccchhcc
Q 016758 18 FKELAQAYEVLSDPEKREIYDQ 39 (383)
Q Consensus 18 FkeI~~AYevLsD~~kR~~YD~ 39 (383)
=.++|+||.+|.||-+|+.|=.
T Consensus 58 Sa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 58 SAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 4589999999999999999953
No 114
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=76.64 E-value=2.6 Score=46.16 Aligned_cols=33 Identities=33% Similarity=0.784 Sum_probs=20.4
Q ss_pred eCCCCcccceEEEEEecCCcceeeeeccCCCCcceeE
Q 016758 129 KCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 165 (383)
Q Consensus 129 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 165 (383)
.|..|+|.|++......=| ..-.+|+.|+|+.+
T Consensus 732 RCe~C~GdG~ikIeM~FLp----dVyv~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLP----DVYVPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEEeccCC----CceeeCCCcCCccc
Confidence 5888888887665444333 33456777766654
No 115
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=76.49 E-value=1.8 Score=48.67 Aligned_cols=34 Identities=35% Similarity=0.765 Sum_probs=20.6
Q ss_pred eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeE
Q 016758 128 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 165 (383)
Q Consensus 128 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 165 (383)
-.|+.|.|.|.+....+.-+ ....+|+.|+|+.+
T Consensus 739 G~C~~C~G~G~~~~~~~f~~----~~~~~C~~C~G~R~ 772 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLP----DVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCcccccceEEEEeccCC----CccccCccccCccc
Confidence 35888888888765444333 22456666666554
No 116
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=75.60 E-value=2.2 Score=21.95 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcC
Q 016758 17 KFKELAQAYEVLS 29 (383)
Q Consensus 17 kFkeI~~AYevLs 29 (383)
+|..+..||+-|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5899999999885
No 117
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=73.23 E-value=4 Score=46.65 Aligned_cols=65 Identities=18% Similarity=0.480 Sum_probs=40.7
Q ss_pred ehhhhc--------ccceeeecceeeeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeE
Q 016758 94 SLEDLY--------NGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGE 165 (383)
Q Consensus 94 tLee~~--------~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 165 (383)
++.+++ .+...++.+. ...|+.|...... ..|+.|+..=. ....|+.|+..
T Consensus 643 ~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te--------------~vy~CPsCGae-- 701 (1337)
T PRK14714 643 DVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTE--------------PVYVCPDCGAE-- 701 (1337)
T ss_pred cHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCC--------------CceeCccCCCc--
Confidence 456676 4445555554 5789999876432 38999987621 13479999863
Q ss_pred EEcC---CCCCCCCCCc
Q 016758 166 TIND---KDRCPQCKGE 179 (383)
Q Consensus 166 ~~~~---~~~C~~C~G~ 179 (383)
+... ...|+.|...
T Consensus 702 v~~des~a~~CP~CGtp 718 (1337)
T PRK14714 702 VPPDESGRVECPRCDVE 718 (1337)
T ss_pred cCCCccccccCCCCCCc
Confidence 1111 1379999854
No 118
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=71.59 E-value=2.6 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=18.4
Q ss_pred CceEEEEEEeCCCC-CCHHHHHHHHhhCC
Q 016758 298 GKLYIHFTVDFPES-LSPDQCKMLETVLP 325 (383)
Q Consensus 298 GdL~i~f~V~~P~~-l~~~~~~~l~~~lp 325 (383)
..||| .+=|.. |.+.+.+.|-++|.
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l~ 1746 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQLR 1746 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHHH
Confidence 47776 466877 99998888777753
No 119
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=71.40 E-value=4.5 Score=35.31 Aligned_cols=39 Identities=33% Similarity=0.985 Sum_probs=31.8
Q ss_pred eeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCC-------CCCCCCCCceEE
Q 016758 128 MKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK-------DRCPQCKGEKVI 182 (383)
Q Consensus 128 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~-------~~C~~C~G~g~~ 182 (383)
..|..|.|.+++ +|..|+|+-++.... .+|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rfv----------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARFV----------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCeE----------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 469999998864 799999999988765 369999977764
No 120
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=70.97 E-value=3.7 Score=39.43 Aligned_cols=23 Identities=9% Similarity=0.343 Sum_probs=17.6
Q ss_pred cccCCCCCCCHHHHH-HHHHHHHH
Q 016758 2 RFSESRKNASQDDLK-KFKELAQA 24 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-kFkeI~~A 24 (383)
++|||+++||.+||| .|+++..-
T Consensus 204 ~vLgv~~~as~~eIk~aYr~L~~~ 227 (267)
T PRK09430 204 KVLGVSESDDDQEIKRAYRKLMSE 227 (267)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999 44444333
No 121
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=70.43 E-value=3.2 Score=38.65 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=26.7
Q ss_pred cccCCCCCCCHHHHH----------------------HHHHHHHHHH-hcCC
Q 016758 2 RFSESRKNASQDDLK----------------------KFKELAQAYE-VLSD 30 (383)
Q Consensus 2 ~iLGV~~~As~~EIK----------------------kFkeI~~AYe-vLsD 30 (383)
.||||...|+.+|++ +|..|.+||. ||+.
T Consensus 51 ril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 51 RILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 589999999999999 8999999998 9974
No 122
>PRK04023 DNA polymerase II large subunit; Validated
Probab=68.78 E-value=4.2 Score=45.47 Aligned_cols=67 Identities=16% Similarity=0.348 Sum_probs=43.3
Q ss_pred ehhhhcc-cceeeecceeeeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCC
Q 016758 94 SLEDLYN-GTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDR 172 (383)
Q Consensus 94 tLee~~~-G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~ 172 (383)
++.+++. +...++.+. ...|+.|.-.+ ....|+.|+..=. ....|+.|.-... ...
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t----~~frCP~CG~~Te--------------~i~fCP~CG~~~~----~y~ 665 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET----FYRRCPFCGTHTE--------------PVYRCPRCGIEVE----EDE 665 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC----CcccCCCCCCCCC--------------cceeCccccCcCC----CCc
Confidence 3567776 566666654 35799998764 3368999987611 1357999944332 266
Q ss_pred CCCCCCceEEE
Q 016758 173 CPQCKGEKVIQ 183 (383)
Q Consensus 173 C~~C~G~g~~~ 183 (383)
|++|.-.-...
T Consensus 666 CPKCG~El~~~ 676 (1121)
T PRK04023 666 CEKCGREPTPY 676 (1121)
T ss_pred CCCCCCCCCcc
Confidence 99998654433
No 123
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.21 E-value=2.8 Score=47.16 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=26.4
Q ss_pred eccCCCCcceeEEEcC-------CCCCCCCCCceEEEEcEE
Q 016758 154 QHPCNECKGTGETIND-------KDRCPQCKGEKVIQEKKV 187 (383)
Q Consensus 154 ~~~C~~C~G~G~~~~~-------~~~C~~C~G~g~~~~~~~ 187 (383)
.-.|+.|.|.|++..+ ...|..|+|+++..+.-.
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~ 776 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLE 776 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHh
Confidence 3569999999998742 245999999998777533
No 124
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=66.84 E-value=31 Score=30.50 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=13.7
Q ss_pred EEEEEEeccCcccCCEEEecC
Q 016758 186 KVLEVIVEKGMQNGQKITFPG 206 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~g 206 (383)
-.|.+.||||...|..-++.|
T Consensus 80 PEl~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 80 PELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeeEEecCCCCCcEEEehHH
Confidence 456677777776666666654
No 125
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=62.19 E-value=21 Score=32.64 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=19.2
Q ss_pred eCCCCcccceEEEEEec-CC--cceeeeeccCCCCcce
Q 016758 129 KCSGCQGSGMKVSIRHL-GP--SMIQQMQHPCNECKGT 163 (383)
Q Consensus 129 ~C~~C~G~G~~~~~~~~-gp--g~~~~~~~~C~~C~G~ 163 (383)
.|+.|++.|........ =| +=+--+...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 47777766665333222 23 3344456678888644
No 126
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=61.72 E-value=5.4 Score=45.05 Aligned_cols=36 Identities=25% Similarity=0.558 Sum_probs=27.2
Q ss_pred eccCCCCcceeEEEcCC-------CCCCCCCCceEEEEcEEEE
Q 016758 154 QHPCNECKGTGETINDK-------DRCPQCKGEKVIQEKKVLE 189 (383)
Q Consensus 154 ~~~C~~C~G~G~~~~~~-------~~C~~C~G~g~~~~~~~l~ 189 (383)
.-.|+.|.|.|++...- ..|..|+|+++..+.-.++
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~ 780 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVK 780 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCccccccceEEE
Confidence 34699999999987432 3599999999877754433
No 127
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=60.86 E-value=47 Score=29.49 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=16.7
Q ss_pred CEEEEEccCCCEEEEEcCCCCcccCCcEEEEcC
Q 016758 253 FQFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 285 (383)
Q Consensus 253 ~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g 285 (383)
+++.||.| .+.+|||. .+.|.+-.|.|
T Consensus 72 a~i~IPEl-----~lei~pg~-~~~G~iTTVEG 98 (163)
T TIGR00340 72 ATIRIPEL-----GIKIEPGP-ASQGYISNIEG 98 (163)
T ss_pred cEEEccce-----eEEecCCC-cCCceEEehHh
Confidence 46677754 45678873 35577666743
No 128
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=59.28 E-value=5.4 Score=40.78 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=22.2
Q ss_pred EEEEecCCcceeeeeccCCCCcceeEEEc
Q 016758 140 VSIRHLGPSMIQQMQHPCNECKGTGETIN 168 (383)
Q Consensus 140 ~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 168 (383)
+..++.++.+...+..+|+.|+|+|.+..
T Consensus 376 ~TRkr~~~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 376 MTRKRLRESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred EeccccCcChHHHhcCCCCCCcCeeEEcc
Confidence 34445677777788899999999998764
No 129
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=58.39 E-value=8.5 Score=35.23 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=31.1
Q ss_pred cccCCCCCCCHHHHH------------------------HHHHHHHHHHhcCCccccchh
Q 016758 2 RFSESRKNASQDDLK------------------------KFKELAQAYEVLSDPEKREIY 37 (383)
Q Consensus 2 ~iLGV~~~As~~EIK------------------------kFkeI~~AYevLsD~~kR~~Y 37 (383)
++|.|.|..|.++|| .|--+..||.+|-|+.-|..-
T Consensus 57 eVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 57 EVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred HHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 689999999999999 688899999999998855433
No 130
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=56.43 E-value=7.8 Score=36.57 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-----CCcccc
Q 016758 8 KNASQDDLKKFKELAQAYEVL-----SDPEKR 34 (383)
Q Consensus 8 ~~As~~EIKkFkeI~~AYevL-----sD~~kR 34 (383)
|-||--|-++.|+||||+|+| +||..|
T Consensus 120 KAATMRERRRLkKVNEAFE~LKRrT~~NPNQR 151 (284)
T KOG3960|consen 120 KAATMRERRRLKKVNEAFETLKRRTSSNPNQR 151 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 456777777999999999998 566655
No 131
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=50.98 E-value=19 Score=25.85 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=20.3
Q ss_pred CCCceEEEEEEeCCCC--CCHHHHHHH
Q 016758 296 MRGKLYIHFTVDFPES--LSPDQCKML 320 (383)
Q Consensus 296 ~~GdL~i~f~V~~P~~--l~~~~~~~l 320 (383)
..||+.|-|+|.+|+- +|.++.+.+
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 4699999999999997 667666554
No 132
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=49.09 E-value=16 Score=36.35 Aligned_cols=32 Identities=44% Similarity=0.878 Sum_probs=23.3
Q ss_pred ceeeeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcce
Q 016758 108 LSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMI 150 (383)
Q Consensus 108 ~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~ 150 (383)
+.-.+.|..|+|.| |+.|+++|+.-. +|-||+
T Consensus 257 ~Evdv~~~~~~g~g--------c~~ck~~~WiEi---lG~Gmv 288 (339)
T PRK00488 257 AEVDVSCFKCGGKG--------CRVCKGTGWLEI---LGCGMV 288 (339)
T ss_pred eEEEEEEeccCCCc--------ccccCCCCceEE---eccCcc
Confidence 34467899999877 889999997532 455665
No 133
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=48.57 E-value=12 Score=40.37 Aligned_cols=49 Identities=29% Similarity=0.738 Sum_probs=31.4
Q ss_pred eeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCc
Q 016758 112 VICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 179 (383)
Q Consensus 112 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 179 (383)
..|+.|+-.- ......|+.|+..-. ...|+.|+-. +.....+|+.|.-.
T Consensus 2 ~~Cp~Cg~~n--~~~akFC~~CG~~l~---------------~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN--PNNNRFCQKCGTSLT---------------HKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC--CCCCccccccCCCCC---------------CCcCCCCCCC--CCcccccccccCCc
Confidence 5799997552 122367999943321 2579999754 33445689999754
No 134
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=47.31 E-value=22 Score=39.02 Aligned_cols=50 Identities=22% Similarity=0.626 Sum_probs=33.5
Q ss_pred eeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCc
Q 016758 111 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGE 179 (383)
Q Consensus 111 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 179 (383)
.+.|..|.- ...|+.|... ++. ++.. -+-.|..|+-...+ -..|+.|.+.
T Consensus 435 ~l~C~~Cg~-------v~~Cp~Cd~~-lt~--H~~~------~~L~CH~Cg~~~~~---p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCGY-------IAECPNCDSP-LTL--HKAT------GQLRCHYCGYQEPI---PQSCPECGSE 484 (730)
T ss_pred eeecccCCC-------cccCCCCCcc-eEE--ecCC------CeeEeCCCCCCCCC---CCCCCCCCCC
Confidence 578999953 3689999876 222 2211 25679999766332 3789999876
No 135
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.92 E-value=22 Score=37.28 Aligned_cols=53 Identities=25% Similarity=0.630 Sum_probs=32.8
Q ss_pred eeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEE
Q 016758 111 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVI 182 (383)
Q Consensus 111 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~ 182 (383)
.+.|..|.- ...|+.|.+. .+.+ +. ...-.|..|+-+ ...-..|+.|.+....
T Consensus 213 ~~~C~~Cg~-------~~~C~~C~~~-l~~h-~~-------~~~l~Ch~Cg~~---~~~~~~Cp~C~s~~l~ 265 (505)
T TIGR00595 213 NLLCRSCGY-------ILCCPNCDVS-LTYH-KK-------EGKLRCHYCGYQ---EPIPKTCPQCGSEDLV 265 (505)
T ss_pred eeEhhhCcC-------ccCCCCCCCc-eEEe-cC-------CCeEEcCCCcCc---CCCCCCCCCCCCCeeE
Confidence 467888853 3689999864 2221 11 124579999644 3334789999876433
No 136
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=46.62 E-value=97 Score=24.03 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=17.5
Q ss_pred HhCCC-EEEEEccCCCEEEEEcCC
Q 016758 249 ALCGF-QFVITHLDGRQLLIKSQP 271 (383)
Q Consensus 249 Al~G~-~~~i~tldG~~l~i~ip~ 271 (383)
+++|. -++|...||....+++|.
T Consensus 8 ~~~G~n~~~V~~~dG~~~l~~iP~ 31 (78)
T cd05792 8 GSKGNNLHEVETPNGSRYLVSMPT 31 (78)
T ss_pred EcCCCcEEEEEcCCCCEEEEEech
Confidence 44555 467899999998898875
No 137
>PRK11712 ribonuclease G; Provisional
Probab=45.50 E-value=9.5 Score=39.88 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=22.0
Q ss_pred EEEEecCCcceeeeeccCCCCcceeEEEc
Q 016758 140 VSIRHLGPSMIQQMQHPCNECKGTGETIN 168 (383)
Q Consensus 140 ~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 168 (383)
+..++.++.+...+..+|+.|+|+|.+..
T Consensus 388 mTRkR~r~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 388 MTRKRTRESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred EEecccCCChHHHhcCCCCCCCCCCCcCC
Confidence 44455677777788889999999998764
No 138
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=45.06 E-value=20 Score=31.57 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=20.5
Q ss_pred eCCCCcccc-eEEEEEecCCcceeeeeccCCCCcce
Q 016758 129 KCSGCQGSG-MKVSIRHLGPSMIQQMQHPCNECKGT 163 (383)
Q Consensus 129 ~C~~C~G~G-~~~~~~~~gpg~~~~~~~~C~~C~G~ 163 (383)
.||.|...= .++..+-+.||..-.....|+.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 578887765 45555666666433333556666544
No 139
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=44.69 E-value=7.9 Score=46.50 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=10.6
Q ss_pred CC--HHHHHHHHhhCCCC
Q 016758 312 LS--PDQCKMLETVLPPR 327 (383)
Q Consensus 312 l~--~~~~~~l~~~lp~~ 327 (383)
|| +.|+-+|...|..+
T Consensus 1700 LSGGE~qRikLa~~l~~~ 1717 (1809)
T PRK00635 1700 LSLSEKIAIKIAKFLYLP 1717 (1809)
T ss_pred cCchHHHHHHHHHHHhcC
Confidence 55 67777777777543
No 140
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=43.81 E-value=53 Score=24.15 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=22.9
Q ss_pred EEEEEccCCCEEEEEcCCCCcccCCcEEEEcC
Q 016758 254 QFVITHLDGRQLLIKSQPGEVVKPDQFKAIND 285 (383)
Q Consensus 254 ~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g 285 (383)
...++|-+|+.+-|.+|.+..+++|+++....
T Consensus 30 r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d~ 61 (65)
T PF02814_consen 30 RLRLTTDDGREIGIDLPRGTVLRDGDVLYLDD 61 (65)
T ss_dssp EEEEE-TTS-EEEEE-SSTTT--TTEEEEECT
T ss_pred EEEEECCCCCEEEEECCCCcccCCCCEEEeCC
Confidence 45678899999999999999999999987654
No 141
>PRK05580 primosome assembly protein PriA; Validated
Probab=42.90 E-value=22 Score=38.76 Aligned_cols=62 Identities=23% Similarity=0.546 Sum_probs=37.1
Q ss_pred ccceeeeccee-----eeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCC
Q 016758 100 NGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 174 (383)
Q Consensus 100 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~ 174 (383)
.|...-+-++| .+.|..|.- ...|+.|.+ ....+. ....-.|..|+-+- ..-..|+
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~-------~~~C~~C~~-~l~~h~--------~~~~l~Ch~Cg~~~---~~~~~Cp 425 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGW-------VAECPHCDA-SLTLHR--------FQRRLRCHHCGYQE---PIPKACP 425 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcC-------ccCCCCCCC-ceeEEC--------CCCeEECCCCcCCC---CCCCCCC
Confidence 34444444444 577888863 357999987 332211 11245699997543 2236899
Q ss_pred CCCCce
Q 016758 175 QCKGEK 180 (383)
Q Consensus 175 ~C~G~g 180 (383)
.|.+..
T Consensus 426 ~Cg~~~ 431 (679)
T PRK05580 426 ECGSTD 431 (679)
T ss_pred CCcCCe
Confidence 998764
No 142
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=42.81 E-value=95 Score=28.44 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=19.6
Q ss_pred EEEEEEeccCcccCCEEEe-cCCcCCCCCCCcccEE
Q 016758 186 KVLEVIVEKGMQNGQKITF-PGEADEAPDTVTGDIV 220 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~-~g~G~~~~~~~~GDli 220 (383)
..+++.|..=...|.-+.- .|.--..++..|||.+
T Consensus 149 e~~~v~Ie~l~~~G~GVak~~g~~vfV~galpGE~V 184 (201)
T PRK12336 149 KTYEVEITGTGRKGDGVAKKGKYTIFVPGAKKGEVV 184 (201)
T ss_pred CEEEEEEEEccCCCceEEEECCEEEEeCCCCCCCEE
Confidence 3456666665566665542 2221124677788875
No 143
>PF13446 RPT: A repeated domain in UCH-protein
Probab=42.53 E-value=25 Score=25.51 Aligned_cols=32 Identities=13% Similarity=0.300 Sum_probs=21.6
Q ss_pred cccCCCCCCCHHHHH-HHHHHHHHHHhcCCccccchhc
Q 016758 2 RFSESRKNASQDDLK-KFKELAQAYEVLSDPEKREIYD 38 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-kFkeI~~AYevLsD~~kR~~YD 38 (383)
++|||+++++++.|- .|+.-.. .||..+..|.
T Consensus 9 ~~Lgi~~~~~Dd~Ii~~f~~~~~-----~~P~~~~~~r 41 (62)
T PF13446_consen 9 EILGIDEDTDDDFIISAFQSKVN-----DDPSQKDTLR 41 (62)
T ss_pred HHhCcCCCCCHHHHHHHHHHHHH-----cChHhHHHHH
Confidence 579999999999988 5554333 5565544443
No 144
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=42.07 E-value=11 Score=30.36 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=6.9
Q ss_pred ccCCCCcceeEE
Q 016758 155 HPCNECKGTGET 166 (383)
Q Consensus 155 ~~C~~C~G~G~~ 166 (383)
..|..|.|.|+.
T Consensus 33 k~c~rcgg~G~s 44 (95)
T PF03589_consen 33 KDCERCGGRGYS 44 (95)
T ss_pred hhhhhhcCCCCC
Confidence 346666666654
No 145
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=41.21 E-value=34 Score=24.18 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=7.8
Q ss_pred eCCCCcccceEE
Q 016758 129 KCSGCQGSGMKV 140 (383)
Q Consensus 129 ~C~~C~G~G~~~ 140 (383)
+||.|.|....+
T Consensus 3 PCPfCGg~~~~~ 14 (53)
T TIGR03655 3 PCPFCGGADVYL 14 (53)
T ss_pred CCCCCCCcceee
Confidence 577777766644
No 146
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=40.97 E-value=31 Score=33.91 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=6.6
Q ss_pred eeeCCCCCCC
Q 016758 111 NVICTKCKGK 120 (383)
Q Consensus 111 ~~~C~~C~G~ 120 (383)
...||.|.+.
T Consensus 187 ~~~CPvCGs~ 196 (309)
T PRK03564 187 RQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCc
Confidence 4567777665
No 147
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=39.58 E-value=27 Score=28.98 Aligned_cols=28 Identities=18% Similarity=0.504 Sum_probs=13.3
Q ss_pred eeeCCCCCCCCcccCceeeCCCCcccce
Q 016758 111 NVICTKCKGKGSKSGASMKCSGCQGSGM 138 (383)
Q Consensus 111 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 138 (383)
...|..|...-........||.|++...
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCCCc
Confidence 4557776643333222234555555443
No 148
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=39.03 E-value=26 Score=23.55 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=5.3
Q ss_pred eeeeCCCCCCCCc
Q 016758 110 RNVICTKCKGKGS 122 (383)
Q Consensus 110 r~~~C~~C~G~G~ 122 (383)
+...||.|.|+..
T Consensus 2 ~h~pCP~CGG~Dr 14 (40)
T PF08273_consen 2 KHGPCPICGGKDR 14 (40)
T ss_dssp EEE--TTTT-TTT
T ss_pred CCCCCCCCcCccc
Confidence 3455666665543
No 149
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=39.02 E-value=55 Score=23.59 Aligned_cols=11 Identities=55% Similarity=1.352 Sum_probs=6.9
Q ss_pred CCCCCCceEEE
Q 016758 173 CPQCKGEKVIQ 183 (383)
Q Consensus 173 C~~C~G~g~~~ 183 (383)
|++|+-+-.+.
T Consensus 31 CpKCK~EtlI~ 41 (55)
T PF14205_consen 31 CPKCKQETLID 41 (55)
T ss_pred CCCCCceEEEE
Confidence 88887554443
No 150
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=37.90 E-value=37 Score=26.37 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.3
Q ss_pred ccCCCCCCCHHHHH--HHHHHHH--HHHhcCCccc
Q 016758 3 FSESRKNASQDDLK--KFKELAQ--AYEVLSDPEK 33 (383)
Q Consensus 3 iLGV~~~As~~EIK--kFkeI~~--AYevLsD~~k 33 (383)
.|-|+++||.+||| -|++... -|..|.|+..
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~A~~~Pl~~~L~d~~~ 37 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQARKMPLGQLLQDESS 37 (78)
T ss_pred eEEccccccHHHHHHHHHHHHHhCCHHHHhCCccc
Confidence 47899999999999 7777654 4778887743
No 151
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=37.66 E-value=27 Score=29.55 Aligned_cols=24 Identities=33% Similarity=0.695 Sum_probs=19.1
Q ss_pred CCCCHHHHH-HHHHHHHHH-HhcCCc
Q 016758 8 KNASQDDLK-KFKELAQAY-EVLSDP 31 (383)
Q Consensus 8 ~~As~~EIK-kFkeI~~AY-evLsD~ 31 (383)
....+++|| -|++|.+|| .+++||
T Consensus 84 ~~~~d~~ik~fF~~vh~~Y~~~~~NP 109 (132)
T PF04628_consen 84 NSIRDEDIKQFFKEVHELYVKALCNP 109 (132)
T ss_dssp -S--HHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcchHHHHHHHHHHHHHHHHHccCC
Confidence 467889999 999999999 688888
No 152
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=37.09 E-value=42 Score=28.39 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=13.8
Q ss_pred EEEEEEeccCcccCCEEEec
Q 016758 186 KVLEVIVEKGMQNGQKITFP 205 (383)
Q Consensus 186 ~~l~V~Ip~G~~~G~~i~~~ 205 (383)
..+++.-+.+++.||.+.+.
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred EEEEecCCCCCCCCCEEEEE
Confidence 55666666777777777664
No 153
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=37.07 E-value=20 Score=39.67 Aligned_cols=35 Identities=23% Similarity=0.613 Sum_probs=25.5
Q ss_pred eecceee-eeCCCCCCCCccc-------CceeeCCCCcccceE
Q 016758 105 KLSLSRN-VICTKCKGKGSKS-------GASMKCSGCQGSGMK 139 (383)
Q Consensus 105 ~i~~~r~-~~C~~C~G~G~~~-------~~~~~C~~C~G~G~~ 139 (383)
.++++.. -.|..|+|.|... .-..+|+.|+|+-+-
T Consensus 723 rFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 723 RFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred cccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 3455444 5799999999864 123789999998774
No 154
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=36.99 E-value=14 Score=24.16 Aligned_cols=9 Identities=33% Similarity=1.029 Sum_probs=5.0
Q ss_pred eeCCCCccc
Q 016758 128 MKCSGCQGS 136 (383)
Q Consensus 128 ~~C~~C~G~ 136 (383)
.+||.|+..
T Consensus 3 i~CP~C~~~ 11 (37)
T PF13719_consen 3 ITCPNCQTR 11 (37)
T ss_pred EECCCCCce
Confidence 456666544
No 155
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=36.98 E-value=32 Score=25.14 Aligned_cols=16 Identities=44% Similarity=0.611 Sum_probs=12.9
Q ss_pred eEEEehhhhcccceee
Q 016758 90 PLKVSLEDLYNGTSKK 105 (383)
Q Consensus 90 ~l~vtLee~~~G~~~~ 105 (383)
..+++|+++.+|-.+.
T Consensus 30 RFeIsLeDl~~GE~VA 45 (67)
T COG5216 30 RFEISLEDLRNGEVVA 45 (67)
T ss_pred EeEEEHHHhhCCceEE
Confidence 4789999999997654
No 156
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.37 E-value=16 Score=32.56 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCccccchhcc
Q 016758 17 KFKELAQAYEVLSDPEKREIYDQ 39 (383)
Q Consensus 17 kFkeI~~AYevLsD~~kR~~YD~ 39 (383)
.+.+++.||.+|.||-+|+.|=.
T Consensus 50 ~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 50 QSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred HHHHhcchHHHHHHHHHHHHHHH
Confidence 89999999999999999998854
No 157
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=34.99 E-value=20 Score=33.81 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=8.4
Q ss_pred ccCCCCcceeEEEc
Q 016758 155 HPCNECKGTGETIN 168 (383)
Q Consensus 155 ~~C~~C~G~G~~~~ 168 (383)
.+|++|.|+|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 35666666666544
No 158
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.96 E-value=36 Score=28.26 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=13.2
Q ss_pred eeeCCCCCCCCcccCceeeCCCCcccce
Q 016758 111 NVICTKCKGKGSKSGASMKCSGCQGSGM 138 (383)
Q Consensus 111 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 138 (383)
...|..|.-.-........||.|++...
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcCCCc
Confidence 3557777633222222234555555543
No 159
>PF09475 Dot_icm_IcmQ: Dot/Icm secretion system protein (dot_icm_IcmQ); InterPro: IPR013365 Proteins in this entry are the IcmQ component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation ().; PDB: 3FXE_A 3FXD_C.
Probab=34.15 E-value=13 Score=32.94 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=0.0
Q ss_pred CCCHHHHH-----HHHHHHHHH--------HhcCCccccchhcccCch
Q 016758 9 NASQDDLK-----KFKELAQAY--------EVLSDPEKREIYDQYGED 43 (383)
Q Consensus 9 ~As~~EIK-----kFkeI~~AY--------evLsD~~kR~~YD~~G~~ 43 (383)
-|+++++| |=..+|||| +||+++.-+...|++|..
T Consensus 98 Y~nE~dvk~~IksKenk~NEAYVaiyInq~dIl~~~~dk~~~Dk~Gkp 145 (179)
T PF09475_consen 98 YANEEDVKAAIKSKENKLNEAYVAIYINQSDILSLSPDKIPTDKLGKP 145 (179)
T ss_dssp ------------------------------------------------
T ss_pred cCCHHHHHHHHHhhhcccceeEEEEEEchHhcccCCcccccccccCCc
Confidence 46777777 667899999 578989999999999854
No 160
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=34.14 E-value=53 Score=29.95 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=14.9
Q ss_pred EEEEEEeccC--cccCCEEEecCC
Q 016758 186 KVLEVIVEKG--MQNGQKITFPGE 207 (383)
Q Consensus 186 ~~l~V~Ip~G--~~~G~~i~~~g~ 207 (383)
.+-.|.+++| ++-|+.|.+.++
T Consensus 63 ~~~~vel~~gE~l~vGDei~vd~e 86 (201)
T COG1326 63 FTKEVELDPGETLKVGDEIEVDGE 86 (201)
T ss_pred cceeEecCCCCeEecCCEEEEcCC
Confidence 4456677777 677777777654
No 161
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=33.90 E-value=14 Score=40.86 Aligned_cols=55 Identities=24% Similarity=0.515 Sum_probs=0.0
Q ss_pred eeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCCCCCCceEEEEcEE
Q 016758 111 NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKV 187 (383)
Q Consensus 111 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~ 187 (383)
...|+.|.-... ...|+.|+..=. ....|+.|+-.- ..+.|++|.-.......+.
T Consensus 655 ~r~Cp~Cg~~t~----~~~Cp~CG~~T~--------------~~~~Cp~C~~~~----~~~~C~~C~~~~~~~~~~~ 709 (900)
T PF03833_consen 655 RRRCPKCGKETF----YNRCPECGSHTE--------------PVYVCPDCGIEV----EEDECPKCGRETTSYSKQK 709 (900)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCcccCCcch----hhcCcccCCccc--------------cceecccccccc----CccccccccccCcccceee
Confidence 356888865432 357998975422 245799996432 2468999986644444433
No 162
>PF14353 CpXC: CpXC protein
Probab=33.51 E-value=27 Score=29.30 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=7.2
Q ss_pred eccCCCCcceeEE
Q 016758 154 QHPCNECKGTGET 166 (383)
Q Consensus 154 ~~~C~~C~G~G~~ 166 (383)
..+|+.|+.+..+
T Consensus 38 ~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 38 SFTCPSCGHKFRL 50 (128)
T ss_pred EEECCCCCCceec
Confidence 3456666655554
No 163
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=33.34 E-value=59 Score=26.55 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=10.2
Q ss_pred ccCCCCcceeEEEcCC-CCCCCCC
Q 016758 155 HPCNECKGTGETINDK-DRCPQCK 177 (383)
Q Consensus 155 ~~C~~C~G~G~~~~~~-~~C~~C~ 177 (383)
..|.-|.++|+..+.. -.|..|.
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~ 59 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCG 59 (102)
T ss_pred EeccccCCCceEEECCEEEEecCC
Confidence 4444444444443321 2355554
No 164
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.33 E-value=19 Score=21.55 Aligned_cols=22 Identities=32% Similarity=0.744 Sum_probs=12.3
Q ss_pred eccCCCCcceeEEEcCCCCCCCCC
Q 016758 154 QHPCNECKGTGETINDKDRCPQCK 177 (383)
Q Consensus 154 ~~~C~~C~G~G~~~~~~~~C~~C~ 177 (383)
...|+.|+- .+......|+.|.
T Consensus 2 ~~~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 2 EMFCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred cCCCcccCC--cCCcccccChhhC
Confidence 345666654 2334445677775
No 165
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=32.54 E-value=45 Score=30.46 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=8.9
Q ss_pred CCCCCHHHHH
Q 016758 7 RKNASQDDLK 16 (383)
Q Consensus 7 ~~~As~~EIK 16 (383)
+++||.|||.
T Consensus 1 S~~ASfeEIq 10 (194)
T PF11833_consen 1 SEDASFEEIQ 10 (194)
T ss_pred CCCCCHHHHH
Confidence 6899999998
No 166
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=32.06 E-value=13 Score=25.05 Aligned_cols=11 Identities=55% Similarity=0.809 Sum_probs=9.4
Q ss_pred HHHHHhcCCcc
Q 016758 22 AQAYEVLSDPE 32 (383)
Q Consensus 22 ~~AYevLsD~~ 32 (383)
++||-+|||.+
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 68999999875
No 167
>PLN00208 translation initiation factor (eIF); Provisional
Probab=31.18 E-value=1.8e+02 Score=25.39 Aligned_cols=59 Identities=15% Similarity=0.301 Sum_probs=38.2
Q ss_pred CCCEEEEEccCCCEEEEEcCCCCc-----ccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhh
Q 016758 251 CGFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 323 (383)
Q Consensus 251 ~G~~~~i~tldG~~l~i~ip~g~v-----i~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~ 323 (383)
-+..+.|...||......|| |.. |++|+.+.|. +..+. -.+|+++-+ ++++|...|++.
T Consensus 43 Gn~~~~V~c~dG~~rLa~Ip-GKmRKrIWI~~GD~VlVe---l~~~d--~~KgdIv~r--------y~~dqvr~Lkk~ 106 (145)
T PLN00208 43 GNGRCEALCIDGTKRLCHIR-GKMRKKVWIAAGDIILVG---LRDYQ--DDKADVILK--------YMPDEARLLKAY 106 (145)
T ss_pred CCCEEEEEECCCCEEEEEEe-ccceeeEEecCCCEEEEE---ccCCC--CCEEEEEEE--------cCHHHHHHHHHc
Confidence 33567778788887776665 432 5678887777 33222 246776654 678888888775
No 168
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=31.18 E-value=22 Score=33.52 Aligned_cols=14 Identities=36% Similarity=0.947 Sum_probs=8.9
Q ss_pred eeeCCCCCCCCccc
Q 016758 111 NVICTKCKGKGSKS 124 (383)
Q Consensus 111 ~~~C~~C~G~G~~~ 124 (383)
.++||+|+|+|..+
T Consensus 38 ~vtCPTCqGtGrIP 51 (238)
T PF07092_consen 38 SVTCPTCQGTGRIP 51 (238)
T ss_pred CCcCCCCcCCccCC
Confidence 35677777777554
No 169
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=31.12 E-value=43 Score=21.48 Aligned_cols=12 Identities=50% Similarity=1.104 Sum_probs=6.7
Q ss_pred eeCCCCcccceE
Q 016758 128 MKCSGCQGSGMK 139 (383)
Q Consensus 128 ~~C~~C~G~G~~ 139 (383)
..|+.|++.|..
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 356666666543
No 170
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=31.05 E-value=61 Score=28.65 Aligned_cols=34 Identities=18% Similarity=0.458 Sum_probs=16.1
Q ss_pred eeCCCCcccceEEEE-EecC-CcceeeeeccCCCCc
Q 016758 128 MKCSGCQGSGMKVSI-RHLG-PSMIQQMQHPCNECK 161 (383)
Q Consensus 128 ~~C~~C~G~G~~~~~-~~~g-pg~~~~~~~~C~~C~ 161 (383)
..|+.|+..|..... ..+. ++-+--+...|+.|+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG 37 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG 37 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC
Confidence 468888888865322 2222 223334555677774
No 171
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=30.52 E-value=25 Score=31.33 Aligned_cols=25 Identities=32% Similarity=0.822 Sum_probs=16.1
Q ss_pred eeCCCCCCCCcccCceeeCCCCcccceE
Q 016758 112 VICTKCKGKGSKSGASMKCSGCQGSGMK 139 (383)
Q Consensus 112 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 139 (383)
++|..|.+.-.+. .+||.|++.|..
T Consensus 163 ilCtvCe~r~w~g---~~CPKCGr~G~p 187 (200)
T PF12387_consen 163 ILCTVCEGREWKG---GNCPKCGRHGKP 187 (200)
T ss_pred EEEeeeecCccCC---CCCCcccCCCCC
Confidence 6788887765533 347777776653
No 172
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=30.50 E-value=29 Score=34.15 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCccccchhccc
Q 016758 17 KFKELAQAYEVLSDPEKREIYDQY 40 (383)
Q Consensus 17 kFkeI~~AYevLsD~~kR~~YD~~ 40 (383)
-|++|..||+||++.++|..+|..
T Consensus 38 ~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 38 EFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred HHHHHHHHHHHHhccccccchhhh
Confidence 589999999999998887777764
No 173
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=30.17 E-value=60 Score=28.61 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=32.2
Q ss_pred EEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCC---CCCCceEEEEEEeC
Q 016758 255 FVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP---FMRGKLYIHFTVDF 308 (383)
Q Consensus 255 ~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~---~~~GdL~i~f~V~~ 308 (383)
+-|++-+|-.|.|.+ | + +...+.|+|+...-.. -+.||++++|++++
T Consensus 63 igi~t~~GvEiLiHi--G--i---DTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~ 112 (156)
T COG2190 63 IGIETDEGVEILIHI--G--I---DTVKLNGEGFESLVKEGDKVKAGDPLLEFDLDL 112 (156)
T ss_pred EEEEcCCCcEEEEEe--c--e---eeEEECCcceEEEeeCCCEEccCCEEEEECHHH
Confidence 456777787777755 4 3 6677889998754222 24799999997543
No 174
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=29.99 E-value=53 Score=32.19 Aligned_cols=9 Identities=22% Similarity=0.896 Sum_probs=5.9
Q ss_pred eeCCCCCCC
Q 016758 112 VICTKCKGK 120 (383)
Q Consensus 112 ~~C~~C~G~ 120 (383)
..||.|.+.
T Consensus 185 ~~CPvCGs~ 193 (305)
T TIGR01562 185 TLCPACGSP 193 (305)
T ss_pred CcCCCCCCh
Confidence 467777654
No 175
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=29.51 E-value=27 Score=28.91 Aligned_cols=28 Identities=14% Similarity=0.452 Sum_probs=13.4
Q ss_pred eeeCCCCCCCCcccCceeeCCCCcccce
Q 016758 111 NVICTKCKGKGSKSGASMKCSGCQGSGM 138 (383)
Q Consensus 111 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 138 (383)
...|..|.-..........||.|++...
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 4567777655544333344666665554
No 176
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=29.31 E-value=1.2e+02 Score=25.12 Aligned_cols=7 Identities=29% Similarity=0.752 Sum_probs=4.5
Q ss_pred eeCCCCc
Q 016758 128 MKCSGCQ 134 (383)
Q Consensus 128 ~~C~~C~ 134 (383)
..|..|+
T Consensus 71 ~~C~~Cg 77 (113)
T PRK12380 71 AWCWDCS 77 (113)
T ss_pred EEcccCC
Confidence 4666666
No 177
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=29.30 E-value=31 Score=29.38 Aligned_cols=18 Identities=11% Similarity=0.525 Sum_probs=11.2
Q ss_pred cccCCCCCCCHHHHH-HHH
Q 016758 2 RFSESRKNASQDDLK-KFK 19 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-kFk 19 (383)
.||+|++.++.+||. +|+
T Consensus 62 ~ILnv~~~~~~eeI~k~y~ 80 (127)
T PF03656_consen 62 QILNVKEELSREEIQKRYK 80 (127)
T ss_dssp HHHT--G--SHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHH
Confidence 689999999999988 444
No 178
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.40 E-value=48 Score=27.34 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=17.3
Q ss_pred cccCCCCCCCHHHHH-HHHHHH
Q 016758 2 RFSESRKNASQDDLK-KFKELA 22 (383)
Q Consensus 2 ~iLGV~~~As~~EIK-kFkeI~ 22 (383)
.||||+++++.+-|| .++.|-
T Consensus 60 lIL~v~~s~~k~KikeaHrriM 81 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIM 81 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHH
Confidence 589999999999888 666653
No 179
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=28.18 E-value=60 Score=26.78 Aligned_cols=8 Identities=25% Similarity=0.937 Sum_probs=4.0
Q ss_pred eeCCCCcc
Q 016758 128 MKCSGCQG 135 (383)
Q Consensus 128 ~~C~~C~G 135 (383)
..|..|+-
T Consensus 71 ~~C~~Cg~ 78 (113)
T PF01155_consen 71 ARCRDCGH 78 (113)
T ss_dssp EEETTTS-
T ss_pred EECCCCCC
Confidence 45666653
No 180
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=27.32 E-value=41 Score=32.10 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=25.3
Q ss_pred ccccCCHHHHhCC-CEEEEEccCCCEEEEEcCC
Q 016758 240 VEHTLSLTEALCG-FQFVITHLDGRQLLIKSQP 271 (383)
Q Consensus 240 ~~~~I~l~eAl~G-~~~~i~tldG~~l~i~ip~ 271 (383)
+...|-|+||++| +..+|+|.|+.+=.+.|.|
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp 50 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITP 50 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcC
Confidence 3467999999999 6899999999765555544
No 181
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=26.44 E-value=82 Score=23.10 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=17.7
Q ss_pred EEEEeCCCCCCHHHHHHHHhhC
Q 016758 303 HFTVDFPESLSPDQCKMLETVL 324 (383)
Q Consensus 303 ~f~V~~P~~l~~~~~~~l~~~l 324 (383)
.....||.+||++++..+-.+-
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la 38 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLA 38 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 5678899999999988775553
No 182
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=26.36 E-value=2.6e+02 Score=21.43 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=35.1
Q ss_pred HhCCCEEEEEccCCCEEEEEcCCCCc-----ccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHh
Q 016758 249 ALCGFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLET 322 (383)
Q Consensus 249 Al~G~~~~i~tldG~~l~i~ip~g~v-----i~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~ 322 (383)
++-+..+.|...||..+...+| |.. |++|+...+. +..+ ...+|+.+-+ ++++|...|++
T Consensus 9 ~~g~~~~~V~~~~g~~~la~i~-gK~rk~iwI~~GD~V~Ve---~~~~--d~~kg~Iv~r--------~~~~~v~~L~~ 73 (77)
T cd05793 9 MLGNGRLEVRCFDGKKRLCRIR-GKMRKRVWINEGDIVLVA---PWDF--QDDKADIIYK--------YTPDEVRWLKR 73 (77)
T ss_pred EcCCCEEEEEECCCCEEEEEEc-hhhcccEEEcCCCEEEEE---eccc--cCCEEEEEEE--------cCHHHHHHHHH
Confidence 3444567888889988777775 432 4456665555 1111 1135555443 56778777765
No 183
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=24.88 E-value=45 Score=22.35 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=4.5
Q ss_pred eCCCCcccc
Q 016758 129 KCSGCQGSG 137 (383)
Q Consensus 129 ~C~~C~G~G 137 (383)
+||.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 355555544
No 184
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.26 E-value=90 Score=25.97 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=14.4
Q ss_pred eeeeCCCCCCCCcccCce-eeCCCCcccceE
Q 016758 110 RNVICTKCKGKGSKSGAS-MKCSGCQGSGMK 139 (383)
Q Consensus 110 r~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~ 139 (383)
-...|..|+-.-...... ..||.|++....
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCCceE
Confidence 345677776333222222 236666655443
No 185
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=23.78 E-value=94 Score=25.75 Aligned_cols=8 Identities=25% Similarity=0.999 Sum_probs=5.6
Q ss_pred eeeCCCCc
Q 016758 127 SMKCSGCQ 134 (383)
Q Consensus 127 ~~~C~~C~ 134 (383)
...|+.|+
T Consensus 70 ~~~C~~Cg 77 (115)
T TIGR00100 70 ECECEDCS 77 (115)
T ss_pred EEEcccCC
Confidence 45788886
No 186
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.73 E-value=74 Score=34.68 Aligned_cols=60 Identities=22% Similarity=0.661 Sum_probs=37.4
Q ss_pred ccceeeeccee-----eeeCCCCCCCCcccCceeeCCCCcccceEEEEEecCCcceeeeeccCCCCcceeEEEcCCCCCC
Q 016758 100 NGTSKKLSLSR-----NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 174 (383)
Q Consensus 100 ~G~~~~i~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~ 174 (383)
.| ..-+-++| ...|..|. ....|+.|.+.= .++ .. ...-.|..|+-.- .-..|+
T Consensus 368 ~g-qvll~lnRrGyap~l~C~~Cg-------~~~~C~~C~~~L-~~h-~~-------~~~l~Ch~CG~~~----~p~~Cp 426 (665)
T PRK14873 368 HG-PVLVQVPRRGYVPSLACARCR-------TPARCRHCTGPL-GLP-SA-------GGTPRCRWCGRAA----PDWRCP 426 (665)
T ss_pred cC-cEEEEecCCCCCCeeEhhhCc-------CeeECCCCCCce-eEe-cC-------CCeeECCCCcCCC----cCccCC
Confidence 45 55555555 46899885 347899998751 111 11 1145699997542 247899
Q ss_pred CCCCce
Q 016758 175 QCKGEK 180 (383)
Q Consensus 175 ~C~G~g 180 (383)
.|.+..
T Consensus 427 ~Cgs~~ 432 (665)
T PRK14873 427 RCGSDR 432 (665)
T ss_pred CCcCCc
Confidence 998763
No 187
>CHL00062 psbB photosystem II 47 kDa protein
Probab=23.28 E-value=1.4e+02 Score=30.86 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=21.6
Q ss_pred HHHHHHhcCCccccchhcccCchhhccC
Q 016758 21 LAQAYEVLSDPEKREIYDQYGEDALKEG 48 (383)
Q Consensus 21 I~~AYevLsD~~kR~~YD~~G~~~~~~g 48 (383)
+++||+-+ |+|=..||--|....++|
T Consensus 298 ~~~a~~~i--p~kl~fydyign~pakgg 323 (504)
T CHL00062 298 LSEAWSKI--PEKLAFYDYIGNNPAKGG 323 (504)
T ss_pred HHHHHHhc--chhhhhhhhcCCCcccCc
Confidence 67899988 899999999997766654
No 188
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=23.28 E-value=83 Score=32.96 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEecCCcceeeeeccCCCCcceeEEEc
Q 016758 142 IRHLGPSMIQQMQHPCNECKGTGETIN 168 (383)
Q Consensus 142 ~~~~gpg~~~~~~~~C~~C~G~G~~~~ 168 (383)
.++.++.+......+|+.|.|+|.+..
T Consensus 383 R~R~~~sl~~~~~~~cp~c~G~g~v~~ 409 (487)
T COG1530 383 RKRTRESLLEVLSERCPGCKGTGHVRS 409 (487)
T ss_pred EEecCCCCceeeeeECCCceeeEEEec
Confidence 334466677778889999999998875
No 189
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=23.16 E-value=3.4e+02 Score=21.95 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=34.0
Q ss_pred CCEEEEEccCCCEEEEEcCCCCc-----ccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhh
Q 016758 252 GFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 323 (383)
Q Consensus 252 G~~~~i~tldG~~l~i~ip~g~v-----i~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~ 323 (383)
+..+.|...||..+...+| |.. |.+|+.+.|. |..-....+|+++-. ++++|...|++.
T Consensus 31 ~~~~~V~~~dG~~~la~i~-GK~Rk~iwI~~GD~VlVs----p~d~~~~~kg~Iv~r--------~~~~qv~~L~~~ 94 (99)
T TIGR00523 31 AGRVKVRCLDGKTRLGRIP-GKLKKRIWIREGDVVIVK----PWEFQGDDKCDIVWR--------YTKTQVEWLKRK 94 (99)
T ss_pred CCEEEEEeCCCCEEEEEEc-hhhcccEEecCCCEEEEE----EccCCCCccEEEEEE--------cCHHHHHHHHHc
Confidence 3456777778887777765 432 4566666662 211111235665544 567787777653
No 190
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=23.06 E-value=3e+02 Score=24.22 Aligned_cols=58 Identities=14% Similarity=0.260 Sum_probs=35.5
Q ss_pred CCEEEEEccCCCEEEEEcCCCCc-----ccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhh
Q 016758 252 GFQFVITHLDGRQLLIKSQPGEV-----VKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETV 323 (383)
Q Consensus 252 G~~~~i~tldG~~l~i~ip~g~v-----i~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~ 323 (383)
+..+.|...||..+...|| |.. |.+|+++.|.- .| +. -.+|+++-+ ++++|...|++.
T Consensus 44 n~~f~V~c~dG~~rLa~I~-GKmRK~IWI~~GD~VlVel--~~-yd--~~KgdIi~R--------y~~devr~Lk~~ 106 (155)
T PTZ00329 44 NGRLEAYCFDGVKRLCHIR-GKMRKRVWINIGDIILVSL--RD-FQ--DSKADVILK--------YTPDEARALKQH 106 (155)
T ss_pred CCEEEEEECCCCEEEEEee-ccceeeEEecCCCEEEEec--cC-CC--CCEEEEEEE--------cCHHHHHHHHHc
Confidence 3456666677766655554 432 56788877742 22 21 246777655 578888888765
No 191
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=22.95 E-value=1.3e+02 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=18.0
Q ss_pred eEEEEEEeCCCCCCHHHHHHHH
Q 016758 300 LYIHFTVDFPESLSPDQCKMLE 321 (383)
Q Consensus 300 L~i~f~V~~P~~l~~~~~~~l~ 321 (383)
..|++.|++|..+++++.+.|+
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~ 24 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLK 24 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHH
Confidence 3689999999999998866654
No 192
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=22.56 E-value=42 Score=35.74 Aligned_cols=11 Identities=45% Similarity=0.972 Sum_probs=8.2
Q ss_pred ccCCCCcceeE
Q 016758 155 HPCNECKGTGE 165 (383)
Q Consensus 155 ~~C~~C~G~G~ 165 (383)
.-|+.|+|+|+
T Consensus 489 ~gC~~C~~~Gy 499 (564)
T TIGR02538 489 VGCDECSNTGY 499 (564)
T ss_pred CCCcccCCCCC
Confidence 45888888876
No 193
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.54 E-value=36 Score=29.13 Aligned_cols=29 Identities=24% Similarity=0.567 Sum_probs=18.9
Q ss_pred ecceeeeeCCCCCCCCcccCceeeCCCCc
Q 016758 106 LSLSRNVICTKCKGKGSKSGASMKCSGCQ 134 (383)
Q Consensus 106 i~~~r~~~C~~C~G~G~~~~~~~~C~~C~ 134 (383)
+.+....+|.-|+-+-...+--..|..|+
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~YCq 88 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSYCQ 88 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccchhh
Confidence 34455677888887776665445666664
No 194
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=22.16 E-value=36 Score=32.41 Aligned_cols=11 Identities=45% Similarity=0.999 Sum_probs=7.7
Q ss_pred ccCCCCcceeE
Q 016758 155 HPCNECKGTGE 165 (383)
Q Consensus 155 ~~C~~C~G~G~ 165 (383)
.-|..|+|+|+
T Consensus 251 ~gC~~C~~~G~ 261 (264)
T cd01129 251 KGCEHCFGTGY 261 (264)
T ss_pred CCchhhCCCCC
Confidence 45777777775
No 195
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=21.91 E-value=1e+02 Score=26.88 Aligned_cols=7 Identities=29% Similarity=1.127 Sum_probs=4.6
Q ss_pred eeCCCCc
Q 016758 128 MKCSGCQ 134 (383)
Q Consensus 128 ~~C~~C~ 134 (383)
..|..|+
T Consensus 113 l~C~~Cg 119 (146)
T PF07295_consen 113 LVCENCG 119 (146)
T ss_pred EecccCC
Confidence 5677774
No 196
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=21.36 E-value=1.3e+02 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=22.1
Q ss_pred eEEEEEEeCCCC-CCHHHHHHHHhhCCC
Q 016758 300 LYIHFTVDFPES-LSPDQCKMLETVLPP 326 (383)
Q Consensus 300 L~i~f~V~~P~~-l~~~~~~~l~~~lp~ 326 (383)
.+.-++|+.|.. |+++|+.-|+.+...
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 577788999965 999999999887643
No 197
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.29 E-value=48 Score=21.55 Aligned_cols=8 Identities=38% Similarity=1.232 Sum_probs=4.0
Q ss_pred eeCCCCcc
Q 016758 128 MKCSGCQG 135 (383)
Q Consensus 128 ~~C~~C~G 135 (383)
..|+.|+-
T Consensus 3 i~Cp~C~~ 10 (36)
T PF13717_consen 3 ITCPNCQA 10 (36)
T ss_pred EECCCCCC
Confidence 34555543
No 198
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=20.90 E-value=96 Score=22.15 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=6.8
Q ss_pred eeCCCCcccceEEE
Q 016758 128 MKCSGCQGSGMKVS 141 (383)
Q Consensus 128 ~~C~~C~G~G~~~~ 141 (383)
.+||-| |.-.+..
T Consensus 4 kPCPFC-G~~~~~~ 16 (61)
T PF14354_consen 4 KPCPFC-GSADVLI 16 (61)
T ss_pred cCCCCC-CCcceEe
Confidence 356666 5544443
No 199
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=20.71 E-value=1.6e+02 Score=23.51 Aligned_cols=21 Identities=10% Similarity=0.445 Sum_probs=17.6
Q ss_pred EEEEEEeCCCCCCHHHHHHHH
Q 016758 301 YIHFTVDFPESLSPDQCKMLE 321 (383)
Q Consensus 301 ~i~f~V~~P~~l~~~~~~~l~ 321 (383)
.|++.|++|..+++++...++
T Consensus 3 lV~m~V~~P~~~~~~~~~~i~ 23 (90)
T TIGR03221 3 HVRMDVNLPVDMPAEKAAAIK 23 (90)
T ss_pred EEEEEeeCCCCCCHHHHHHHH
Confidence 589999999999988766654
No 200
>TIGR02527 dot_icm_IcmQ Dot/Icm secretion system protein IcmQ. Members of this protein family are the IcmQ component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation (PubMed:15661013).
Probab=20.70 E-value=35 Score=30.39 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHH-----HHHHHHHHH--------HhcCCccccchhcccCch
Q 016758 5 ESRKNASQDDLK-----KFKELAQAY--------EVLSDPEKREIYDQYGED 43 (383)
Q Consensus 5 GV~~~As~~EIK-----kFkeI~~AY--------evLsD~~kR~~YD~~G~~ 43 (383)
+=+=-|+++++| |=..+|||| +||+.+.-+..-|++|..
T Consensus 94 sRPIYanE~dvk~~IksKenk~NEAYVaiyI~q~dIl~~~~dk~p~Dk~Gkp 145 (182)
T TIGR02527 94 GRPIYADEADAKAAIKQKENKLNEACVAIAIDQSDIIHLSADKAPKDKLGKL 145 (182)
T ss_pred CCCCcCCHHHHHHHHHhhhccccceEEEEEEchHhcccCCcccCcccccCCc
Confidence 334468888888 666799998 689998888899999854
No 201
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=20.52 E-value=4.5e+02 Score=21.01 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=47.6
Q ss_pred CCCEEEEEccCCCEEEEEcCCCCcccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCCCCHHHHHHHHhhCCC
Q 016758 251 CGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPP 326 (383)
Q Consensus 251 ~G~~~~i~tldG~~l~i~ip~g~vi~~g~~~~i~g~Gmp~~~~~~~~GdL~i~f~V~~P~~l~~~~~~~l~~~lp~ 326 (383)
-|..+.+.+.||..+.|.+++..-...+..+-|-|+=.+ ...+-...-+.|.++++.+....|-++...
T Consensus 28 ~~~~~~~~~~Dg~~v~v~l~~~~~~~~~~~vEViG~V~~-------~~~I~~~~~~~~g~~~D~~~yn~lv~l~~~ 96 (101)
T cd04479 28 DGDSLTLISSDGVNVTVELNRPLDLPISGYVEVIGKVSP-------DLTIRVLSYIDFGDDFDMDLYNELVKLSHK 96 (101)
T ss_pred cCCeEEEEcCCCCEEEEEeCCCCCcccCCEEEEEEEECC-------CCeEEEEEEEECCCccCHHHHHHHHHHHhh
Confidence 344577888898778887765433466777777776433 244556667889999998888777777643
No 202
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=20.32 E-value=2.2e+02 Score=23.27 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=6.7
Q ss_pred CCCCCCceEEE
Q 016758 173 CPQCKGEKVIQ 183 (383)
Q Consensus 173 C~~C~G~g~~~ 183 (383)
|++|.++++.-
T Consensus 23 Cp~CG~nkF~y 33 (112)
T COG3364 23 CPKCGCNKFLY 33 (112)
T ss_pred CccccchheEe
Confidence 77776665443
No 203
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=20.08 E-value=71 Score=21.14 Aligned_cols=6 Identities=33% Similarity=1.126 Sum_probs=3.6
Q ss_pred CCCCcc
Q 016758 130 CSGCQG 135 (383)
Q Consensus 130 C~~C~G 135 (383)
||.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 666654
Done!