Query 016761
Match_columns 383
No_of_seqs 167 out of 333
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 97.8 0.00012 4.1E-09 71.8 11.1 160 109-288 7-172 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 97.2 0.00071 2.4E-08 64.3 8.2 160 108-288 6-173 (263)
3 1g9r_A Glycosyl transferase; a 96.9 0.0017 6E-08 62.4 7.3 181 109-306 3-207 (311)
4 3tzt_A Glycosyl transferase fa 96.5 0.009 3.1E-07 56.7 9.5 180 109-304 8-210 (276)
5 2c0n_A A197; thermophil protei 42.9 17 0.00059 33.0 3.5 67 152-233 16-88 (203)
6 1fo8_A Alpha-1,3-mannosyl-glyc 25.5 3.9E+02 0.013 25.6 10.2 110 107-224 5-121 (343)
7 3e61_A Putative transcriptiona 21.4 2.8E+02 0.0096 24.0 7.8 58 141-205 65-123 (277)
8 3l9k_W Dynein intermediate cha 15.6 65 0.0022 21.4 1.5 30 178-207 8-37 (38)
9 3p0b_A TT1467 protein; glycosi 14.7 62 0.0021 33.5 1.8 29 194-222 227-255 (540)
10 3lou_A Formyltetrahydrofolate 13.8 7.6E+02 0.026 22.9 9.2 43 124-169 109-151 (292)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=97.77 E-value=0.00012 Score=71.82 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=90.6
Q ss_pred EEEEcCccccCCChhHHHHHHhhhhccCcccccccEEEEEec---HHHHHHHHhcCccEEEeecCCcCcccccccccHHH
Q 016761 109 ILTTLNEAWAAPDSVIDLFLESFRIGDGTRKLLNHLVIIALD---QKAFERCLTLHRHCFALITDGVDFHQEAYFMTPQY 185 (383)
Q Consensus 109 IlT~~N~a~a~pgs~ldlFLeS~r~g~~t~~ll~hllVvAlD---~~a~~~c~~~g~~c~~~~~~~~d~s~~~~~gS~~f 185 (383)
|+.++|.+|... +-..+.|++... +. ..++|+..| ++..+.+++.+........-..............+
T Consensus 7 vt~~~d~~Yl~~---a~vl~~SL~~~~-s~---~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~ 79 (333)
T 1ll2_A 7 VTLTTNDAYAKG---ALVLGSSLKQHR-TS---RRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPE 79 (333)
T ss_dssp EEEESSHHHHHH---HHHHHHHHHHTT-CC---SEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGG
T ss_pred EEEEeCHHHHHH---HHHHHHHHHHhC-CC---CCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccc
Confidence 444578888531 112356776521 21 345555443 56677777777654444321111110000000112
Q ss_pred HHHHHHHHHHHHHHHHcCc-eEEEecceEEeccCCccCcCCCCCeeEeccCCCCCCCCCCCCCceEEEEEeeChHHHHHH
Q 016761 186 LKMMWKRIDFLRTVLEMGY-NFIFTDADIMWFRDPFPRFYPDADFQVACDHFLGSPDDVQNRPNGGFNHVKSNNRSIEFY 264 (383)
Q Consensus 186 ~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRNP~p~f~~~aDi~issD~~~g~~~~~~~~~NtGf~yvRst~~ti~f~ 264 (383)
...++.|+.+.. + ..| .||+.|+|++.++|+-+.|..+ .+....|. ..+..+|+|++.++++..+-
T Consensus 80 ~~~t~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d~------~~~~~fNsGvmlin~~~~~~--- 146 (333)
T 1ll2_A 80 LGVTLTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPDP------GWPDCFNSGVFVYQPSVETY--- 146 (333)
T ss_dssp GHHHHHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEECS------SSTTSEEEEEEEECCCHHHH---
T ss_pred hHHHHHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEecC------CCCcceeeeEEEEeCCHHHH---
Confidence 246777877664 2 345 5999999999999998888544 33333342 12457899999999985443
Q ss_pred HHHHHHHhcCC--CCCChHHHHHHHc
Q 016761 265 RFWYASRETYP--GYHDQDVLNIIKF 288 (383)
Q Consensus 265 ~~W~~~~~~~p--~~~DQ~vfN~l~~ 288 (383)
+.+.+...... ...||++||.+..
T Consensus 147 ~~l~~~~~~~~~~~~~DQ~~LN~~f~ 172 (333)
T 1ll2_A 147 NQLLHVASEQGSFDGGDQGLLNTFFN 172 (333)
T ss_dssp HHHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 33333322221 3479999999884
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=97.23 E-value=0.00071 Score=64.34 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=90.3
Q ss_pred EEEEE-cCccccCCChhHHHHHHhhhhccCcccccccEEEEE---ecHHHHHHHHhcCccEEEeecCCcCccc---cccc
Q 016761 108 VILTT-LNEAWAAPDSVIDLFLESFRIGDGTRKLLNHLVIIA---LDQKAFERCLTLHRHCFALITDGVDFHQ---EAYF 180 (383)
Q Consensus 108 VIlT~-~N~a~a~pgs~ldlFLeS~r~g~~t~~ll~hllVvA---lD~~a~~~c~~~g~~c~~~~~~~~d~s~---~~~~ 180 (383)
..+|. +|.+|... .-..+.|++... +. ..++|+. ++++..+.+++.+......+. .+... ....
T Consensus 6 AyvTl~td~~Yl~g---a~vL~~SL~~~~-s~---~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~--l~~~~~~~~~~~ 76 (263)
T 3u2u_A 6 AFVTLTTNDAYAKG---ALVLGSSLKQHR-TT---RRLVVLATPQVSDSMRKVLETVFDEVIMVDV--LDSGDSAHLTLM 76 (263)
T ss_dssp EEEEEESSHHHHHH---HHHHHHHHHHTT-CC---SEEEEEECTTSCHHHHHHHHHHSSEEEECCC--CCCCCHHHHHHT
T ss_pred EEEEEEECHHHHHH---HHHHHHHHHHhC-CC---CCEEEEecCCCCHHHHHHHHHcCCeEEEeee--cCCcchhhhhhh
Confidence 33443 57777531 122467776532 22 1234443 456777888888765544432 11110 0011
Q ss_pred ccHHHHHHHHHHHHHHHHHHHcCc-eEEEecceEEeccCCccCcCCCCCeeEeccCCCCCCCCCCCCCceEEEEEeeChH
Q 016761 181 MTPQYLKMMWKRIDFLRTVLEMGY-NFIFTDADIMWFRDPFPRFYPDADFQVACDHFLGSPDDVQNRPNGGFNHVKSNNR 259 (383)
Q Consensus 181 gS~~f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRNP~p~f~~~aDi~issD~~~g~~~~~~~~~NtGf~yvRst~~ 259 (383)
..+.+ ..++.|..+... + .| .||+.|+|++.++|.-+.|..+ .+....|.. .+..+|+|++.+.++..
T Consensus 77 ~rp~~-~~~~~kl~~~~l-~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d~~------~~~~fNsGv~li~p~~~ 145 (263)
T 3u2u_A 77 KRPEL-GVTLTKLHCWSL-T--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPDPG------WPDCFNSGVFVYQPSVE 145 (263)
T ss_dssp TCTTG-GGGGGGGGGGGC-T--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEECTT------STTSEEEEEEEECCCHH
T ss_pred cCcch-hHHhHHHHhccc-c--CcceEEEEcCCEeeccCHHHHhCCC-cceEeccCC------CCccccCeEEEEcccHH
Confidence 11222 345666665542 2 46 4999999999999998888554 344444421 23578999999999865
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHc
Q 016761 260 SIEFYRFWYASRETYPGYHDQDVLNIIKF 288 (383)
Q Consensus 260 ti~f~~~W~~~~~~~p~~~DQ~vfN~l~~ 288 (383)
+-+-+-+........ ...||+++|.++.
T Consensus 146 ~~~~l~~~~~~~~~~-~~~DQd~LN~~f~ 173 (263)
T 3u2u_A 146 TYNQLLHLASEQGSF-DGGDQGILNTFFS 173 (263)
T ss_dssp HHHHHHHHHHHHCCT-TSSHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCC-CcccHHHHHHHhc
Confidence 433333333222222 3479999999984
No 3
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=96.86 E-value=0.0017 Score=62.40 Aligned_cols=181 Identities=13% Similarity=0.155 Sum_probs=93.6
Q ss_pred EEEEcCccccCCChhHHHHHHhh-hhccCcccccccEEEEEec--HHHHHHHHhc----CccEEEeecCCcCcccccccc
Q 016761 109 ILTTLNEAWAAPDSVIDLFLESF-RIGDGTRKLLNHLVIIALD--QKAFERCLTL----HRHCFALITDGVDFHQEAYFM 181 (383)
Q Consensus 109 IlT~~N~a~a~pgs~ldlFLeS~-r~g~~t~~ll~hllVvAlD--~~a~~~c~~~----g~~c~~~~~~~~d~s~~~~~g 181 (383)
|+.++|.+|..+ +-..+.|+ ... .... -++.|++.| ++..+.+++. +............+......
T Consensus 3 I~~~~d~~Y~~~---~~vli~Sl~l~~-~~~~--~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~- 75 (311)
T 1g9r_A 3 IVFAADDNYAAY---LCVAAKSVEAAH-PDTE--IRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLN- 75 (311)
T ss_dssp EEEEECGGGHHH---HHHHHHHHHHTC-TTSC--CEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCC-
T ss_pred EEEECCHhHHHH---HHHHHHHHHHHc-CCCC--ceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccc-
Confidence 556688888542 22346677 321 1122 144555544 6666666654 43333233221122110000
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCc-eEEEecceEEeccCCccCcCC---CCCeeEeccCCCC-CC--------CCCCCCCc
Q 016761 182 TPQYLKMMWKRIDFLRTVLEMGY-NFIFTDADIMWFRDPFPRFYP---DADFQVACDHFLG-SP--------DDVQNRPN 248 (383)
Q Consensus 182 S~~f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRNP~p~f~~---~aDi~issD~~~g-~~--------~~~~~~~N 248 (383)
.+.+...+..|+. +-+++. .| .||+.|+|++-++|.-+.+.- +.-+....|++.. .+ .......|
T Consensus 76 ~~~~s~~~y~Rl~-l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfN 153 (311)
T 1g9r_A 76 IRHISITTYARLK-LGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFN 153 (311)
T ss_dssp CTTCCGGGGGGGG-HHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEE
T ss_pred cccCCHHHHHHHH-HHHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEe
Confidence 0111123334443 344443 44 499999999999999887753 2334444554321 00 01235789
Q ss_pred eEEEEEeeCh----HHHHHHHHHHHHHhcCCCCCChHHHHHHHcCCCCCCCCcEEEEccccc
Q 016761 249 GGFNHVKSNN----RSIEFYRFWYASRETYPGYHDQDVLNIIKFDPSIMDIGLKIKFLDTAY 306 (383)
Q Consensus 249 tGf~yvRst~----~ti~f~~~W~~~~~~~p~~~DQ~vfN~l~~~~~~~~~gl~v~~L~~~~ 306 (383)
+|++.+..+. ...+-+..|.......-...||+++|.+... ++..||..+
T Consensus 154 sGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~~--------~~~~Lp~~w 207 (311)
T 1g9r_A 154 AGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKG--------GVCYANSRF 207 (311)
T ss_dssp EEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHTT--------SEEEECGGG
T ss_pred eeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHHcC--------CEEEcChhh
Confidence 9999998653 1223333454433222235799999998832 356676543
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=96.53 E-value=0.009 Score=56.67 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=84.2
Q ss_pred EEEEcCccccCCChhHHHHHHhhhhccCcccccccEEEEEe--cHHHHHHHHhc----CccEEEeecCCcCccccccccc
Q 016761 109 ILTTLNEAWAAPDSVIDLFLESFRIGDGTRKLLNHLVIIAL--DQKAFERCLTL----HRHCFALITDGVDFHQEAYFMT 182 (383)
Q Consensus 109 IlT~~N~a~a~pgs~ldlFLeS~r~g~~t~~ll~hllVvAl--D~~a~~~c~~~----g~~c~~~~~~~~d~s~~~~~gS 182 (383)
|+.++|..|..+ +-.-+.|+........+ ++.|+.. +++..+.+++. +............+... -.+
T Consensus 8 I~~~~d~~Y~~~---~~v~i~Sl~~~~~~~~~--~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~--~~~ 80 (276)
T 3tzt_A 8 LLLTLDENYIPQ---MKVLMTSIYINNPGRIF--DVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFA--KVT 80 (276)
T ss_dssp EEEECCGGGHHH---HHHHHHHHHHHSTTCCE--EEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred EEEEeCHhHHHH---HHHHHHHHHHhCCCCce--EEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcC--ccc
Confidence 678889998653 22235566442111121 2334443 34544444432 33222222221112110 112
Q ss_pred HHHHHHHHHHHHHHHHHHHcCc-eEEEecceEEeccCCccCcCC---CCCeeEeccCCCCCC---------CCCCCCCce
Q 016761 183 PQYLKMMWKRIDFLRTVLEMGY-NFIFTDADIMWFRDPFPRFYP---DADFQVACDHFLGSP---------DDVQNRPNG 249 (383)
Q Consensus 183 ~~f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRNP~p~f~~---~aDi~issD~~~g~~---------~~~~~~~Nt 249 (383)
+.|...+..|+. +-+++...+ .||+.|+|++.++|.-+.+.- +.-+....|+..... .......|+
T Consensus 81 ~~~s~~~~~rl~-~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNs 159 (276)
T 3tzt_A 81 DRYPKEMYYRLL-AGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNS 159 (276)
T ss_dssp ---CHHHHHHHT-HHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEE
T ss_pred cccCHHHHHHHH-HHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEe
Confidence 234445555543 344554445 599999999999999888753 233544455533210 011367899
Q ss_pred EEEEEeeCh-HHHHHHHHHHHHHhcCC---CCCChHHHHHHHcCCCCCCCCcEEEEccc
Q 016761 250 GFNHVKSNN-RSIEFYRFWYASRETYP---GYHDQDVLNIIKFDPSIMDIGLKIKFLDT 304 (383)
Q Consensus 250 Gf~yvRst~-~ti~f~~~W~~~~~~~p---~~~DQ~vfN~l~~~~~~~~~gl~v~~L~~ 304 (383)
|++.+..+. |-..+.+.+.+...+++ ...||++||.++.. ++..||.
T Consensus 160 GV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~~--------~~~~Lp~ 210 (276)
T 3tzt_A 160 GLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILNAMYGD--------RIYPLDD 210 (276)
T ss_dssp EEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHHHHHGG--------GEEEEEH
T ss_pred eEEEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHHHHHhC--------CEEECCc
Confidence 999998764 11111222222222222 25899999999832 4788885
No 5
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=42.93 E-value=17 Score=32.99 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=45.4
Q ss_pred HHHHHHHhcCccEEEeecCCcCcccccccccHHHHHHHHHHHHHHHHHHH-cCce-EEEecceEEeccCCccCc----CC
Q 016761 152 KAFERCLTLHRHCFALITDGVDFHQEAYFMTPQYLKMMWKRIDFLRTVLE-MGYN-FIFTDADIMWFRDPFPRF----YP 225 (383)
Q Consensus 152 ~a~~~c~~~g~~c~~~~~~~~d~s~~~~~gS~~f~~m~w~K~~~l~~vL~-lGy~-VLfsDvDVVWlRNP~p~f----~~ 225 (383)
.....|.+.|++.+.... .. -+...|..++.++|+ .||+ ++|.|+|||=+.=|-..+ ..
T Consensus 16 ~l~~~l~~~gi~~~l~~~-~S--------------lI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~ 80 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSR-RN--------------HVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFNE 80 (203)
T ss_dssp HHHHHHHHTTCCEEEECC-CS--------------CHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEcc-cc--------------chHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHhC
Confidence 445677888887766533 11 244568899999888 6987 889999977555332222 35
Q ss_pred CCCeeEec
Q 016761 226 DADFQVAC 233 (383)
Q Consensus 226 ~aDi~iss 233 (383)
++|+++.+
T Consensus 81 g~DVV~Gs 88 (203)
T 2c0n_A 81 GYDVVCGY 88 (203)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEE
Confidence 88998764
No 6
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=25.49 E-value=3.9e+02 Score=25.57 Aligned_cols=110 Identities=10% Similarity=0.026 Sum_probs=66.7
Q ss_pred eEEEEEcCccccCCChhHHHHHHhhhhccCcccccccEEEEEecH---HHHHHHHhcCccEEEeecCCcC--cccccccc
Q 016761 107 TVILTTLNEAWAAPDSVIDLFLESFRIGDGTRKLLNHLVIIALDQ---KAFERCLTLHRHCFALITDGVD--FHQEAYFM 181 (383)
Q Consensus 107 tVIlT~~N~a~a~pgs~ldlFLeS~r~g~~t~~ll~hllVvAlD~---~a~~~c~~~g~~c~~~~~~~~d--~s~~~~~g 181 (383)
.|||++.|.. . +..-|+|+..... .--...|||+.|. ++.+.+++.+...-........ ...+...|
T Consensus 5 pViI~~yNRp-----~-l~~~L~sL~~~~p--~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g 76 (343)
T 1fo8_A 5 PILVIACDRS-----T-VRRCLDKLLHYRP--SAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRK 76 (343)
T ss_dssp CEEEEESSCT-----T-HHHHHHHHHHHCS--CTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGG
T ss_pred cEEEEECCcH-----H-HHHHHHHHHhcCC--CcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcC
Confidence 5788888865 2 6777888865321 1123467888775 4556666543221111111111 11123345
Q ss_pred cHHHHHHHHHHHHHHHHHHH--cCceEEEecceEEeccCCccCcC
Q 016761 182 TPQYLKMMWKRIDFLRTVLE--MGYNFIFTDADIMWFRDPFPRFY 224 (383)
Q Consensus 182 S~~f~~m~w~K~~~l~~vL~--lGy~VLfsDvDVVWlRNP~p~f~ 224 (383)
-++|.++...-...+..+.+ .+=.+|+.|-|++.=.|=|+||.
T Consensus 77 ~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 77 FQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred cccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 56677776666667777776 56669999999999888888874
No 7
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=21.38 E-value=2.8e+02 Score=24.05 Aligned_cols=58 Identities=9% Similarity=-0.074 Sum_probs=35.2
Q ss_pred cccEEEEEecHHHHH-HHHhcCccEEEeecCCcCcccccccccHHHHHHHHHHHHHHHHHHHcCce
Q 016761 141 LNHLVIIALDQKAFE-RCLTLHRHCFALITDGVDFHQEAYFMTPQYLKMMWKRIDFLRTVLEMGYN 205 (383)
Q Consensus 141 l~hllVvAlD~~a~~-~c~~~g~~c~~~~~~~~d~s~~~~~gS~~f~~m~w~K~~~l~~vL~lGy~ 205 (383)
++-+|+...+++..+ .+.+.++|++.+.....+ .. +-..++.+.+.. ....++++|+.
T Consensus 65 ~dgiIi~~~~~~~~~~~l~~~~iPvV~~~~~~~~---~~-~V~~D~~~~g~~---a~~~L~~~G~~ 123 (277)
T 3e61_A 65 CTGMISTAFNENIIENTLTDHHIPFVFIDRINNE---HN-GISTNHFKGGQL---QAEVVRKGKGK 123 (277)
T ss_dssp CSEEEECGGGHHHHHHHHHHC-CCEEEGGGCC-------------HHHHHHH---HHHHHHHTTCC
T ss_pred CCEEEEecCChHHHHHHHHcCCCCEEEEeccCCC---CC-eEEechHHHHHH---HHHHHHHCCCC
Confidence 456778888899999 999999999887653221 11 344455555544 55667778986
No 8
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=15.62 E-value=65 Score=21.45 Aligned_cols=30 Identities=3% Similarity=0.173 Sum_probs=26.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHcCceEE
Q 016761 178 AYFMTPQYLKMMWKRIDFLRTVLEMGYNFI 207 (383)
Q Consensus 178 ~~~gS~~f~~m~w~K~~~l~~vL~lGy~VL 207 (383)
....|.+|....-+..++|.+.|.-.||++
T Consensus 8 ~I~~S~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 8 MIILSENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHccccccc
Confidence 456789999999999999999999888864
No 9
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=14.67 E-value=62 Score=33.51 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=24.6
Q ss_pred HHHHHHHHcCceEEEecceEEeccCCccC
Q 016761 194 DFLRTVLEMGYNFIFTDADIMWFRDPFPR 222 (383)
Q Consensus 194 ~~l~~vL~lGy~VLfsDvDVVWlRNP~p~ 222 (383)
.+...+-+.|+..+|+|...+-...|.|.
T Consensus 227 ~l~~~L~~~Gi~y~~vd~~~~~~~~~~p~ 255 (540)
T 3p0b_A 227 GVDELLMRAGIRYTFVDAHLVQGGEPLSP 255 (540)
T ss_dssp CHHHHHHHTTCCEEEECTHHHHCSSCCCC
T ss_pred hHHHHHHHcCCeEEEECchhhccCCCCCC
Confidence 57888899999999999998887777653
No 10
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=13.82 E-value=7.6e+02 Score=22.95 Aligned_cols=43 Identities=7% Similarity=0.009 Sum_probs=28.5
Q ss_pred HHHHHHhhhhccCcccccccEEEEEecHHHHHHHHhcCccEEEeec
Q 016761 124 IDLFLESFRIGDGTRKLLNHLVIIALDQKAFERCLTLHRHCFALIT 169 (383)
Q Consensus 124 ldlFLeS~r~g~~t~~ll~hllVvAlD~~a~~~c~~~g~~c~~~~~ 169 (383)
|.-.++.++.|+.. .+=.+|++--+++++.|++.|+|++..+.
T Consensus 109 l~~ll~~~~~g~l~---~~i~~Visn~~~~~~~A~~~gIp~~~~~~ 151 (292)
T 3lou_A 109 LADLLFRWKMGELK---MDIVGIVSNHPDFAPLAAQHGLPFRHFPI 151 (292)
T ss_dssp HHHHHHHHHHTSSC---CEEEEEEESSSTTHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHHcCCCC---cEEEEEEeCcHHHHHHHHHcCCCEEEeCC
Confidence 55556666655321 23346677667788999999999988653
Done!