Query 016762
Match_columns 383
No_of_seqs 448 out of 4075
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09563 rbgA GTPase YlqF; Rev 100.0 1.7E-54 3.7E-59 415.3 33.7 277 99-378 3-285 (287)
2 TIGR03596 GTPase_YlqF ribosome 100.0 3E-53 6.5E-58 404.6 33.0 270 100-372 1-276 (276)
3 COG1161 Predicted GTPases [Gen 100.0 2.4E-46 5.3E-51 363.3 25.7 276 98-376 12-300 (322)
4 KOG2484 GTPase [General functi 100.0 4.6E-45 9.9E-50 349.0 22.1 270 95-376 121-406 (435)
5 COG2262 HflX GTPases [General 100.0 5.1E-45 1.1E-49 352.1 4.8 222 43-289 20-267 (411)
6 KOG2485 Conserved ATP/GTP bind 100.0 3.6E-39 7.8E-44 300.8 24.2 279 90-374 16-323 (335)
7 KOG1424 Predicted GTP-binding 100.0 2.9E-39 6.2E-44 317.4 24.6 258 108-377 162-478 (562)
8 KOG2423 Nucleolar GTPase [Gene 100.0 7.7E-40 1.7E-44 311.5 19.4 254 105-377 198-462 (572)
9 TIGR03156 GTP_HflX GTP-binding 100.0 1.1E-36 2.3E-41 299.2 5.3 219 43-286 17-261 (351)
10 PRK11058 GTPase HflX; Provisio 100.0 8.1E-36 1.8E-40 299.4 8.1 218 44-286 26-269 (426)
11 cd01856 YlqF YlqF. Proteins o 100.0 7.8E-32 1.7E-36 239.4 20.6 171 102-273 1-171 (171)
12 cd01858 NGP_1 NGP-1. Autoanti 100.0 1.2E-28 2.7E-33 215.7 17.1 151 114-272 2-157 (157)
13 cd04178 Nucleostemin_like Nucl 100.0 2.6E-27 5.7E-32 210.4 17.5 150 122-272 1-172 (172)
14 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 3.1E-27 6.7E-32 203.3 16.9 136 111-275 2-141 (141)
15 cd01849 YlqF_related_GTPase Yl 99.9 1.2E-26 2.5E-31 202.8 18.0 151 122-272 1-155 (155)
16 cd01855 YqeH YqeH. YqeH is an 99.9 1.2E-24 2.6E-29 196.3 15.7 150 110-272 24-190 (190)
17 cd01859 MJ1464 MJ1464. This f 99.9 4.1E-24 8.9E-29 186.6 18.4 149 114-272 6-156 (156)
18 COG1160 Predicted GTPases [Gen 99.9 2.4E-24 5.1E-29 211.8 16.9 164 107-275 70-239 (444)
19 PRK13796 GTPase YqeH; Provisio 99.9 5E-23 1.1E-27 203.6 16.8 152 110-275 59-223 (365)
20 KOG0410 Predicted GTP binding 99.9 7.3E-25 1.6E-29 205.3 3.4 247 44-314 7-287 (410)
21 TIGR03597 GTPase_YqeH ribosome 99.9 6.4E-23 1.4E-27 202.6 16.7 155 107-275 50-217 (360)
22 PRK12289 GTPase RsgA; Reviewed 99.9 1.3E-22 2.7E-27 198.9 15.6 143 116-277 85-239 (352)
23 TIGR00157 ribosome small subun 99.9 1E-21 2.2E-26 184.2 13.7 144 116-279 32-188 (245)
24 PRK12288 GTPase RsgA; Reviewed 99.8 1.2E-19 2.6E-24 177.8 15.8 140 118-277 118-272 (347)
25 PRK00098 GTPase RsgA; Reviewed 99.8 1.2E-19 2.6E-24 175.0 13.7 140 117-275 77-229 (298)
26 PRK03003 GTP-binding protein D 99.8 5.8E-19 1.3E-23 180.6 18.4 181 87-274 85-271 (472)
27 PRK00093 GTP-binding protein D 99.8 8.8E-19 1.9E-23 177.6 19.1 182 86-276 47-235 (435)
28 cd01854 YjeQ_engC YjeQ/EngC. 99.8 2.4E-19 5.1E-24 172.1 14.0 142 116-276 74-227 (287)
29 PF13167 GTP-bdg_N: GTP-bindin 99.8 6.6E-21 1.4E-25 151.1 1.5 82 43-129 8-95 (95)
30 TIGR03594 GTPase_EngA ribosome 99.8 6.4E-19 1.4E-23 178.2 16.3 181 87-275 46-233 (429)
31 PRK09518 bifunctional cytidyla 99.8 5.1E-18 1.1E-22 181.6 18.9 184 87-275 322-511 (712)
32 COG1162 Predicted GTPases [Gen 99.7 4.9E-16 1.1E-20 147.1 14.3 141 118-277 77-231 (301)
33 PRK01889 GTPase RsgA; Reviewed 99.6 1.7E-15 3.7E-20 149.5 12.3 144 118-281 110-266 (356)
34 COG1084 Predicted GTPase [Gene 99.5 1.5E-14 3.2E-19 137.1 9.4 71 214-285 165-238 (346)
35 PF03193 DUF258: Protein of un 99.5 7.1E-14 1.5E-18 122.1 8.4 95 166-278 2-103 (161)
36 PF02421 FeoB_N: Ferrous iron 99.5 6.7E-14 1.5E-18 121.9 7.4 61 218-279 1-64 (156)
37 COG1159 Era GTPase [General fu 99.5 6.1E-14 1.3E-18 131.8 7.1 65 219-284 8-75 (298)
38 COG0486 ThdF Predicted GTPase 99.4 1.8E-13 3.9E-18 135.7 7.9 60 215-274 215-277 (454)
39 COG1160 Predicted GTPases [Gen 99.4 1.9E-13 4.1E-18 135.1 5.9 59 218-276 4-65 (444)
40 PF01926 MMR_HSR1: 50S ribosom 99.4 5.4E-13 1.2E-17 110.4 6.4 58 219-276 1-61 (116)
41 COG0218 Predicted GTPase [Gene 99.3 1.7E-12 3.6E-17 116.0 6.8 60 217-276 24-84 (200)
42 KOG1191 Mitochondrial GTPase [ 99.3 6.2E-12 1.3E-16 124.7 7.6 59 216-274 267-328 (531)
43 PTZ00258 GTP-binding protein; 99.2 1.7E-11 3.7E-16 121.5 6.8 59 216-275 20-98 (390)
44 PRK12298 obgE GTPase CgtA; Rev 99.2 1.4E-11 3E-16 123.0 6.0 57 219-276 161-221 (390)
45 TIGR00436 era GTP-binding prot 99.2 1.7E-11 3.6E-16 116.8 6.3 57 219-275 2-61 (270)
46 PRK05291 trmE tRNA modificatio 99.2 2.9E-11 6.4E-16 123.1 8.4 59 216-274 214-275 (449)
47 cd01900 YchF YchF subfamily. 99.2 2.2E-11 4.8E-16 115.7 5.3 55 220-275 1-75 (274)
48 PRK09601 GTP-binding protein Y 99.2 2.7E-11 5.8E-16 118.9 5.9 57 218-275 3-79 (364)
49 COG1163 DRG Predicted GTPase [ 99.2 8.5E-11 1.8E-15 111.5 8.0 59 216-275 62-123 (365)
50 KOG1423 Ras-like GTPase ERA [C 99.1 7.1E-11 1.5E-15 111.0 6.0 63 215-277 70-135 (379)
51 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 1.4E-10 3.1E-15 104.9 7.6 58 219-276 2-63 (196)
52 KOG1490 GTP-binding protein CR 99.1 4.7E-11 1E-15 118.5 4.5 72 215-287 166-240 (620)
53 PRK12299 obgE GTPase CgtA; Rev 99.1 1.4E-10 3E-15 113.6 6.2 57 218-275 159-219 (335)
54 KOG1489 Predicted GTP-binding 99.1 8.2E-11 1.8E-15 111.2 4.2 56 219-275 198-257 (366)
55 TIGR00450 mnmE_trmE_thdF tRNA 99.1 3.1E-10 6.8E-15 115.2 8.4 60 215-274 201-263 (442)
56 cd01853 Toc34_like Toc34-like 99.1 3.1E-10 6.6E-15 106.8 7.4 61 215-275 29-92 (249)
57 PRK12296 obgE GTPase CgtA; Rev 99.0 1.9E-10 4.1E-15 117.3 6.0 57 218-275 160-219 (500)
58 cd01878 HflX HflX subfamily. 99.0 7.6E-10 1.7E-14 100.5 9.2 84 191-276 16-103 (204)
59 TIGR03598 GTPase_YsxC ribosome 99.0 4.6E-10 1E-14 100.0 7.2 60 216-275 17-77 (179)
60 PRK12297 obgE GTPase CgtA; Rev 99.0 2.9E-10 6.2E-15 114.4 6.4 55 219-274 160-218 (424)
61 PRK00454 engB GTP-binding prot 99.0 5.1E-10 1.1E-14 100.6 6.8 60 216-275 23-83 (196)
62 PRK15494 era GTPase Era; Provi 99.0 1.2E-09 2.6E-14 107.5 8.1 59 217-275 52-113 (339)
63 PRK04213 GTP-binding protein; 99.0 8.4E-10 1.8E-14 99.9 6.5 54 217-272 9-62 (201)
64 TIGR03594 GTPase_EngA ribosome 99.0 5.6E-10 1.2E-14 113.0 5.6 56 219-274 1-59 (429)
65 PRK00089 era GTPase Era; Revie 99.0 8.3E-10 1.8E-14 106.2 6.3 58 219-276 7-67 (292)
66 TIGR02729 Obg_CgtA Obg family 99.0 7.2E-10 1.6E-14 108.4 5.8 57 218-275 158-218 (329)
67 TIGR00991 3a0901s02IAP34 GTP-b 98.9 1.9E-09 4.2E-14 103.4 8.0 60 216-275 37-99 (313)
68 PRK09602 translation-associate 98.9 1.1E-09 2.3E-14 109.7 6.3 57 218-275 2-85 (396)
69 cd01898 Obg Obg subfamily. Th 98.9 1.4E-09 3E-14 95.1 5.1 55 219-274 2-60 (170)
70 PRK03003 GTP-binding protein D 98.9 2.4E-09 5.2E-14 109.9 7.3 57 217-273 38-97 (472)
71 COG0370 FeoB Fe2+ transport sy 98.9 2.7E-09 5.9E-14 110.4 7.6 57 218-275 4-63 (653)
72 cd01897 NOG NOG1 is a nucleola 98.9 2.5E-09 5.4E-14 93.4 6.1 55 219-274 2-59 (168)
73 COG0536 Obg Predicted GTPase [ 98.9 1.2E-09 2.5E-14 104.6 4.0 56 219-275 161-220 (369)
74 COG0012 Predicted GTPase, prob 98.9 2.3E-09 5E-14 104.2 5.2 58 217-275 2-80 (372)
75 PRK00093 GTP-binding protein D 98.8 3.2E-09 7E-14 107.8 6.0 57 218-274 2-61 (435)
76 cd04164 trmE TrmE (MnmE, ThdF, 98.8 5.4E-09 1.2E-13 89.6 6.2 58 218-275 2-62 (157)
77 cd01899 Ygr210 Ygr210 subfamil 98.8 3.2E-09 6.9E-14 103.2 5.3 55 220-275 1-82 (318)
78 cd01896 DRG The developmentall 98.8 4.8E-09 1E-13 97.8 6.2 56 219-275 2-60 (233)
79 PRK09518 bifunctional cytidyla 98.8 4.6E-09 1E-13 112.9 6.7 57 218-274 276-335 (712)
80 KOG1491 Predicted GTP-binding 98.8 4.4E-09 9.5E-14 100.4 5.5 60 215-275 18-97 (391)
81 cd01894 EngA1 EngA1 subfamily. 98.8 4.1E-09 8.8E-14 90.5 4.7 55 221-275 1-58 (157)
82 cd01895 EngA2 EngA2 subfamily. 98.8 6.2E-09 1.4E-13 90.5 5.9 59 217-275 2-63 (174)
83 PRK09554 feoB ferrous iron tra 98.8 6.8E-09 1.5E-13 111.8 7.2 56 218-274 4-62 (772)
84 cd01879 FeoB Ferrous iron tran 98.8 3.9E-09 8.6E-14 90.9 4.3 52 222-274 1-55 (158)
85 cd01881 Obg_like The Obg-like 98.8 6.9E-09 1.5E-13 91.0 4.3 52 222-274 1-56 (176)
86 cd04163 Era Era subfamily. Er 98.8 1.7E-08 3.7E-13 86.9 6.7 59 217-275 3-64 (168)
87 TIGR00993 3a0901s04IAP86 chlor 98.8 2.3E-08 4.9E-13 103.7 8.6 61 216-276 117-180 (763)
88 cd01876 YihA_EngB The YihA (En 98.7 1.7E-08 3.7E-13 87.2 6.0 56 220-275 2-58 (170)
89 cd04171 SelB SelB subfamily. 98.7 2.9E-08 6.4E-13 85.9 6.2 54 219-272 2-61 (164)
90 PF04548 AIG1: AIG1 family; I 98.7 3.6E-08 7.8E-13 90.6 6.7 62 218-279 1-66 (212)
91 TIGR00092 GTP-binding protein 98.7 3.4E-08 7.3E-13 97.3 6.1 58 218-275 3-80 (368)
92 TIGR00231 small_GTP small GTP- 98.6 8.8E-08 1.9E-12 81.2 6.8 55 218-273 2-61 (161)
93 cd01851 GBP Guanylate-binding 98.6 9.2E-08 2E-12 88.7 7.4 60 218-277 8-75 (224)
94 cd04166 CysN_ATPS CysN_ATPS su 98.6 2.7E-08 5.9E-13 91.0 3.8 55 219-273 1-88 (208)
95 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 6.2E-08 1.3E-12 84.4 5.9 54 219-273 2-61 (168)
96 PRK09866 hypothetical protein; 98.5 1.5E-07 3.2E-12 97.5 7.6 87 192-285 50-144 (741)
97 cd01861 Rab6 Rab6 subfamily. 98.5 1.3E-07 2.8E-12 81.9 6.1 53 219-272 2-59 (161)
98 cd04171 SelB SelB subfamily. 98.5 6.2E-07 1.3E-11 77.5 9.9 104 87-199 50-163 (164)
99 PF00009 GTP_EFTU: Elongation 98.5 4.9E-07 1.1E-11 81.2 9.4 97 103-200 77-185 (188)
100 PRK15467 ethanolamine utilizat 98.5 8.5E-07 1.9E-11 77.6 10.6 93 109-202 53-147 (158)
101 cd04165 GTPBP1_like GTPBP1-lik 98.5 1E-06 2.2E-11 81.7 10.4 97 103-200 91-221 (224)
102 COG3596 Predicted GTPase [Gene 98.5 9.5E-08 2.1E-12 89.3 3.3 63 216-279 38-104 (296)
103 cd04104 p47_IIGP_like p47 (47- 98.4 2.8E-07 6E-12 83.6 5.5 58 218-275 2-65 (197)
104 TIGR00437 feoB ferrous iron tr 98.4 2.7E-07 5.9E-12 97.1 5.8 51 224-275 1-54 (591)
105 cd01863 Rab18 Rab18 subfamily. 98.4 7.1E-07 1.5E-11 77.2 7.0 56 218-273 1-60 (161)
106 cd00154 Rab Rab family. Rab G 98.4 4.9E-07 1.1E-11 77.0 5.8 56 218-273 1-60 (159)
107 TIGR02836 spore_IV_A stage IV 98.4 3.8E-07 8.2E-12 90.2 5.5 60 216-275 16-104 (492)
108 cd01894 EngA1 EngA1 subfamily. 98.4 4.2E-06 9.1E-11 71.6 11.4 108 87-198 44-154 (157)
109 PLN03118 Rab family protein; P 98.4 7.6E-07 1.7E-11 81.4 7.1 57 217-273 14-73 (211)
110 cd01860 Rab5_related Rab5-rela 98.4 6.7E-07 1.4E-11 77.5 6.4 55 218-272 2-60 (163)
111 cd00881 GTP_translation_factor 98.4 3.6E-07 7.8E-12 80.9 4.7 55 219-273 1-73 (189)
112 cd01889 SelB_euk SelB subfamil 98.4 3.5E-07 7.5E-12 82.4 4.5 56 218-273 1-79 (192)
113 PF10662 PduV-EutP: Ethanolami 98.4 4.1E-06 8.8E-11 71.8 10.7 90 108-198 51-142 (143)
114 TIGR02528 EutP ethanolamine ut 98.4 4E-06 8.7E-11 71.2 10.8 82 115-197 57-140 (142)
115 cd01868 Rab11_like Rab11-like. 98.4 7.2E-07 1.6E-11 77.6 6.3 55 218-273 4-63 (165)
116 cd00880 Era_like Era (E. coli 98.4 4.6E-07 1E-11 76.7 4.8 55 222-276 1-59 (163)
117 PRK15467 ethanolamine utilizat 98.4 3.6E-07 7.8E-12 79.9 4.1 48 219-275 3-50 (158)
118 cd01866 Rab2 Rab2 subfamily. 98.4 1.1E-06 2.5E-11 77.0 7.3 55 218-272 5-63 (168)
119 cd01889 SelB_euk SelB subfamil 98.3 6.9E-06 1.5E-10 73.8 12.5 106 85-199 65-183 (192)
120 cd01890 LepA LepA subfamily. 98.3 6.9E-06 1.5E-10 72.4 12.1 101 86-198 65-173 (179)
121 TIGR00436 era GTP-binding prot 98.3 4.1E-06 8.9E-11 79.8 11.3 92 110-202 69-164 (270)
122 cd04154 Arl2 Arl2 subfamily. 98.3 9.7E-07 2.1E-11 77.8 6.5 56 216-273 13-69 (173)
123 cd01888 eIF2_gamma eIF2-gamma 98.3 4.5E-06 9.8E-11 76.0 10.9 103 88-199 83-196 (203)
124 KOG1249 Predicted GTPases [Gen 98.3 9.9E-07 2.1E-11 88.9 6.5 131 113-256 103-263 (572)
125 cd04155 Arl3 Arl3 subfamily. 98.3 1.2E-06 2.6E-11 76.8 6.4 57 216-273 13-69 (173)
126 cd01850 CDC_Septin CDC/Septin. 98.3 1.3E-06 2.9E-11 83.5 7.0 59 216-274 3-75 (276)
127 cd04160 Arfrp1 Arfrp1 subfamil 98.3 7.6E-07 1.7E-11 77.5 4.9 55 219-273 1-61 (167)
128 cd01895 EngA2 EngA2 subfamily. 98.3 1.7E-05 3.6E-10 68.7 13.1 84 116-199 80-172 (174)
129 PRK12317 elongation factor 1-a 98.3 8.5E-07 1.9E-11 89.9 5.3 57 216-272 5-94 (425)
130 TIGR03156 GTP_HflX GTP-binding 98.3 1E-05 2.2E-10 80.0 12.7 107 88-199 237-349 (351)
131 cd04145 M_R_Ras_like M-Ras/R-R 98.3 1.4E-06 3.1E-11 75.4 5.9 54 218-273 3-61 (164)
132 cd04156 ARLTS1 ARLTS1 subfamil 98.3 1.4E-06 3E-11 75.4 5.7 53 219-273 1-55 (160)
133 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.3 1.7E-06 3.6E-11 76.6 6.4 54 218-273 16-70 (174)
134 cd01867 Rab8_Rab10_Rab13_like 98.2 2.5E-06 5.4E-11 74.7 7.1 56 217-273 3-63 (167)
135 cd04163 Era Era subfamily. Er 98.2 2.6E-05 5.6E-10 66.8 13.2 111 86-199 49-166 (168)
136 cd00878 Arf_Arl Arf (ADP-ribos 98.2 1.7E-06 3.7E-11 74.7 5.8 53 219-273 1-54 (158)
137 COG1159 Era GTPase [General fu 98.2 9E-06 2E-10 77.1 10.9 115 86-203 52-173 (298)
138 cd04119 RJL RJL (RabJ-Like) su 98.2 2E-06 4.3E-11 74.5 6.1 54 218-272 1-59 (168)
139 cd01891 TypA_BipA TypA (tyrosi 98.2 1.4E-06 3E-11 78.6 5.3 55 219-273 4-76 (194)
140 smart00178 SAR Sar1p-like memb 98.2 2E-06 4.4E-11 76.9 6.3 55 217-273 17-72 (184)
141 cd01884 EF_Tu EF-Tu subfamily. 98.2 1.6E-06 3.4E-11 78.7 5.6 56 218-273 3-76 (195)
142 cd04157 Arl6 Arl6 subfamily. 98.2 1.7E-06 3.6E-11 74.8 5.6 54 219-273 1-56 (162)
143 cd04139 RalA_RalB RalA/RalB su 98.2 1.4E-06 3.1E-11 75.2 5.1 53 219-273 2-59 (164)
144 smart00175 RAB Rab subfamily o 98.2 2.8E-06 6.1E-11 73.4 6.8 54 218-272 1-59 (164)
145 cd01890 LepA LepA subfamily. 98.2 1.1E-06 2.4E-11 77.5 4.2 56 219-274 2-79 (179)
146 TIGR02729 Obg_CgtA Obg family 98.2 4.3E-06 9.2E-11 82.0 8.7 90 110-199 225-326 (329)
147 CHL00071 tufA elongation facto 98.2 1.8E-06 3.9E-11 87.1 6.2 57 216-272 11-85 (409)
148 KOG1486 GTP-binding protein DR 98.2 3E-06 6.5E-11 78.2 7.0 59 216-275 61-122 (364)
149 cd04137 RheB Rheb (Ras Homolog 98.2 1.7E-06 3.6E-11 76.6 5.3 54 218-273 2-60 (180)
150 cd04138 H_N_K_Ras_like H-Ras/N 98.2 2E-06 4.3E-11 74.0 5.7 54 218-273 2-60 (162)
151 PTZ00327 eukaryotic translatio 98.2 1E-05 2.2E-10 82.6 11.6 96 103-199 124-230 (460)
152 cd00881 GTP_translation_factor 98.2 1.2E-05 2.6E-10 71.1 10.8 104 87-199 61-184 (189)
153 COG0486 ThdF Predicted GTPase 98.2 4.8E-06 1E-10 83.3 8.9 111 86-201 263-375 (454)
154 PRK12296 obgE GTPase CgtA; Rev 98.2 1.6E-05 3.6E-10 81.5 12.8 114 86-202 204-340 (500)
155 PRK09866 hypothetical protein; 98.2 2.2E-05 4.8E-10 81.7 13.5 109 87-199 229-350 (741)
156 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.2 2.9E-06 6.3E-11 73.9 6.3 55 218-273 3-62 (166)
157 cd01864 Rab19 Rab19 subfamily. 98.2 3.9E-06 8.5E-11 73.1 7.1 55 218-272 4-62 (165)
158 cd04113 Rab4 Rab4 subfamily. 98.2 3.7E-06 8E-11 72.8 6.7 53 219-272 2-59 (161)
159 PRK00089 era GTPase Era; Revie 98.2 3.8E-05 8.1E-10 73.8 14.2 113 86-201 51-170 (292)
160 cd01898 Obg Obg subfamily. Th 98.2 6.6E-06 1.4E-10 71.7 8.0 89 111-199 69-168 (170)
161 KOG2486 Predicted GTPase [Gene 98.2 2.3E-06 5.1E-11 80.0 5.3 57 216-272 135-193 (320)
162 cd01862 Rab7 Rab7 subfamily. 98.2 3.3E-06 7.1E-11 73.7 6.1 53 219-272 2-59 (172)
163 cd04159 Arl10_like Arl10-like 98.2 3.7E-06 8E-11 71.7 6.2 53 220-273 2-55 (159)
164 cd04118 Rab24 Rab24 subfamily. 98.2 4E-06 8.8E-11 75.1 6.7 55 218-273 1-61 (193)
165 cd04106 Rab23_lke Rab23-like s 98.2 3.8E-06 8.3E-11 72.6 6.3 53 219-272 2-61 (162)
166 cd04136 Rap_like Rap-like subf 98.2 2.5E-06 5.5E-11 73.7 5.1 54 218-273 2-60 (163)
167 cd01886 EF-G Elongation factor 98.2 2.4E-06 5.2E-11 81.4 5.4 56 219-274 1-76 (270)
168 cd01865 Rab3 Rab3 subfamily. 98.2 5.3E-06 1.1E-10 72.4 7.1 55 218-273 2-61 (165)
169 TIGR02528 EutP ethanolamine ut 98.1 2.2E-06 4.7E-11 72.8 4.4 44 219-272 2-45 (142)
170 cd04109 Rab28 Rab28 subfamily. 98.1 4E-06 8.7E-11 76.9 6.4 53 219-272 2-60 (215)
171 cd04151 Arl1 Arl1 subfamily. 98.1 3.7E-06 8E-11 72.8 5.8 53 219-273 1-54 (158)
172 cd04175 Rap1 Rap1 subgroup. T 98.1 3.4E-06 7.5E-11 73.3 5.5 54 218-273 2-60 (164)
173 cd04142 RRP22 RRP22 subfamily. 98.1 4.2E-06 9.1E-11 76.0 6.2 54 219-273 2-60 (198)
174 PRK13768 GTPase; Provisional 98.1 1.5E-05 3.3E-10 75.2 10.2 117 82-201 91-246 (253)
175 cd01893 Miro1 Miro1 subfamily. 98.1 3.3E-06 7.1E-11 73.9 5.2 53 219-273 2-58 (166)
176 cd04149 Arf6 Arf6 subfamily. 98.1 5E-06 1.1E-10 73.2 6.4 55 217-273 9-64 (168)
177 cd00879 Sar1 Sar1 subfamily. 98.1 5.1E-06 1.1E-10 74.2 6.5 55 217-273 19-74 (190)
178 PRK12299 obgE GTPase CgtA; Rev 98.1 1.1E-05 2.4E-10 79.2 9.3 111 87-201 205-327 (335)
179 smart00173 RAS Ras subfamily o 98.1 5.6E-06 1.2E-10 71.8 6.5 53 219-273 2-59 (164)
180 cd04123 Rab21 Rab21 subfamily. 98.1 5.1E-06 1.1E-10 71.4 6.0 54 219-273 2-60 (162)
181 cd01878 HflX HflX subfamily. 98.1 4.9E-05 1.1E-09 68.8 12.7 106 89-198 90-201 (204)
182 cd00876 Ras Ras family. The R 98.1 3.5E-06 7.6E-11 72.3 4.9 54 219-274 1-59 (160)
183 cd04124 RabL2 RabL2 subfamily. 98.1 1.3E-05 2.7E-10 69.9 8.5 104 85-198 46-154 (161)
184 TIGR00487 IF-2 translation ini 98.1 4.9E-06 1.1E-10 87.4 6.6 58 215-273 85-146 (587)
185 cd00880 Era_like Era (E. coli 98.1 5.1E-05 1.1E-09 64.0 11.8 111 87-199 44-161 (163)
186 PRK12735 elongation factor Tu; 98.1 5.7E-06 1.2E-10 83.2 6.7 58 216-273 11-86 (396)
187 cd04140 ARHI_like ARHI subfami 98.1 5.1E-06 1.1E-10 72.6 5.6 55 218-274 2-61 (165)
188 cd04177 RSR1 RSR1 subgroup. R 98.1 6.8E-06 1.5E-10 72.0 6.4 54 218-273 2-60 (168)
189 cd04161 Arl2l1_Arl13_like Arl2 98.1 5.7E-06 1.2E-10 72.7 5.9 52 219-272 1-53 (167)
190 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 7.6E-06 1.7E-10 73.0 6.7 54 217-272 3-62 (183)
191 TIGR00475 selB selenocysteine- 98.1 2.4E-05 5.3E-10 82.3 11.5 99 104-203 58-167 (581)
192 cd04164 trmE TrmE (MnmE, ThdF, 98.1 1.9E-05 4.1E-10 67.4 9.0 82 113-199 73-154 (157)
193 cd04112 Rab26 Rab26 subfamily. 98.1 7.1E-06 1.5E-10 73.7 6.6 53 219-272 2-60 (191)
194 cd00157 Rho Rho (Ras homology) 98.1 8.3E-06 1.8E-10 71.1 6.8 56 218-274 1-60 (171)
195 PF05049 IIGP: Interferon-indu 98.1 6.8E-06 1.5E-10 81.2 6.7 61 216-277 34-101 (376)
196 PRK15494 era GTPase Era; Provi 98.1 4.9E-05 1.1E-09 74.9 12.7 114 87-202 99-216 (339)
197 PRK10512 selenocysteinyl-tRNA- 98.1 3E-05 6.5E-10 82.0 11.7 98 104-202 59-166 (614)
198 cd04125 RabA_like RabA-like su 98.1 9.6E-06 2.1E-10 72.5 6.8 55 219-273 2-60 (188)
199 TIGR03680 eif2g_arch translati 98.0 3.5E-05 7.6E-10 77.8 11.3 104 88-200 80-194 (406)
200 cd01891 TypA_BipA TypA (tyrosi 98.0 2E-05 4.2E-10 71.0 8.5 99 87-194 64-174 (194)
201 COG2262 HflX GTPases [General 98.0 3.5E-05 7.7E-10 75.9 10.7 124 92-229 243-372 (411)
202 cd04122 Rab14 Rab14 subfamily. 98.0 1.4E-05 3E-10 69.8 7.1 54 218-273 3-62 (166)
203 cd04158 ARD1 ARD1 subfamily. 98.0 9.8E-06 2.1E-10 71.2 6.1 51 219-273 1-54 (169)
204 cd04135 Tc10 TC10 subfamily. 98.0 1.3E-05 2.8E-10 70.3 6.8 54 218-273 1-59 (174)
205 cd01887 IF2_eIF5B IF2/eIF5B (i 98.0 9.7E-05 2.1E-09 64.1 12.3 106 87-201 49-165 (168)
206 cd04114 Rab30 Rab30 subfamily. 98.0 1.2E-05 2.6E-10 70.1 6.4 56 217-273 7-67 (169)
207 cd04110 Rab35 Rab35 subfamily. 98.0 1.4E-05 3.1E-10 72.3 7.1 57 217-273 6-66 (199)
208 cd04101 RabL4 RabL4 (Rab-like4 98.0 2.5E-05 5.5E-10 67.6 8.4 104 86-198 50-160 (164)
209 cd04116 Rab9 Rab9 subfamily. 98.0 1.3E-05 2.8E-10 70.1 6.4 56 216-272 4-64 (170)
210 cd04101 RabL4 RabL4 (Rab-like4 98.0 1.3E-05 2.8E-10 69.5 6.4 55 218-272 1-62 (164)
211 PRK05306 infB translation init 98.0 8.2E-06 1.8E-10 88.1 6.1 59 214-273 287-348 (787)
212 cd04124 RabL2 RabL2 subfamily. 98.0 1.4E-05 3.1E-10 69.5 6.6 56 218-273 1-60 (161)
213 cd01879 FeoB Ferrous iron tran 98.0 2.1E-05 4.6E-10 67.4 7.4 80 119-200 73-155 (158)
214 cd04168 TetM_like Tet(M)-like 98.0 1.2E-05 2.6E-10 75.2 6.2 56 219-274 1-76 (237)
215 TIGR00484 EF-G translation elo 98.0 1.2E-05 2.6E-10 86.4 7.0 57 218-274 11-87 (689)
216 cd04176 Rap2 Rap2 subgroup. T 98.0 1.7E-05 3.7E-10 68.8 6.7 54 218-273 2-60 (163)
217 PRK00007 elongation factor G; 98.0 9.6E-06 2.1E-10 87.2 6.2 57 218-274 11-87 (693)
218 PTZ00099 rab6; Provisional 98.0 4.2E-05 9.1E-10 68.2 9.3 108 83-199 24-139 (176)
219 cd04144 Ras2 Ras2 subfamily. 98.0 1.3E-05 2.8E-10 72.0 6.0 53 219-273 1-58 (190)
220 cd04156 ARLTS1 ARLTS1 subfamil 98.0 1.3E-05 2.8E-10 69.2 5.7 102 87-197 43-157 (160)
221 cd04151 Arl1 Arl1 subfamily. 98.0 3.6E-05 7.7E-10 66.6 8.5 102 87-197 42-155 (158)
222 TIGR00475 selB selenocysteine- 98.0 1.1E-05 2.3E-10 85.0 6.0 54 219-272 2-60 (581)
223 PRK05291 trmE tRNA modificatio 98.0 6.1E-05 1.3E-09 77.0 11.3 82 113-200 287-368 (449)
224 cd01884 EF_Tu EF-Tu subfamily. 97.9 9.3E-05 2E-09 67.1 11.3 87 103-190 72-171 (195)
225 cd04160 Arfrp1 Arfrp1 subfamil 97.9 3.5E-05 7.7E-10 66.9 8.3 102 87-197 49-164 (167)
226 cd04115 Rab33B_Rab33A Rab33B/R 97.9 2.4E-05 5.2E-10 68.7 7.1 55 218-273 3-62 (170)
227 PLN03127 Elongation factor Tu; 97.9 1.5E-05 3.3E-10 81.2 6.6 58 216-273 60-135 (447)
228 cd04157 Arl6 Arl6 subfamily. 97.9 4.7E-05 1E-09 65.6 8.7 102 87-197 44-159 (162)
229 PF00735 Septin: Septin; Inte 97.9 1.5E-05 3.3E-10 76.4 6.0 58 217-274 4-75 (281)
230 cd04149 Arf6 Arf6 subfamily. 97.9 4.1E-05 8.8E-10 67.4 8.3 102 86-196 51-164 (168)
231 cd01881 Obg_like The Obg-like 97.9 3.3E-05 7.1E-10 67.5 7.6 86 112-197 66-172 (176)
232 KOG1547 Septin CDC10 and relat 97.9 8.8E-06 1.9E-10 74.7 4.0 60 215-274 44-116 (336)
233 PRK12298 obgE GTPase CgtA; Rev 97.9 7.3E-05 1.6E-09 74.9 10.9 92 110-201 227-332 (390)
234 cd04154 Arl2 Arl2 subfamily. 97.9 1.8E-05 3.8E-10 69.7 5.9 102 87-197 57-170 (173)
235 PLN03110 Rab GTPase; Provision 97.9 2.5E-05 5.4E-10 71.8 7.1 56 217-273 12-72 (216)
236 cd01862 Rab7 Rab7 subfamily. 97.9 4.7E-05 1E-09 66.3 8.5 103 88-199 49-164 (172)
237 PRK04000 translation initiatio 97.9 6.2E-05 1.3E-09 76.1 10.4 104 88-200 85-199 (411)
238 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.9 9.9E-05 2.1E-09 65.8 10.3 101 102-202 76-185 (221)
239 cd04106 Rab23_lke Rab23-like s 97.9 4.9E-05 1.1E-09 65.6 8.4 103 86-197 49-158 (162)
240 cd04112 Rab26 Rab26 subfamily. 97.9 7.9E-05 1.7E-09 66.9 10.0 105 87-200 49-161 (191)
241 PRK00049 elongation factor Tu; 97.9 2E-05 4.3E-10 79.3 6.7 58 216-273 11-86 (396)
242 cd04150 Arf1_5_like Arf1-Arf5- 97.9 2.2E-05 4.7E-10 68.4 6.1 53 219-273 2-55 (159)
243 PTZ00133 ADP-ribosylation fact 97.9 2.4E-05 5.1E-10 69.9 6.4 55 217-273 17-72 (182)
244 cd00877 Ran Ran (Ras-related n 97.9 2.8E-05 6.1E-10 68.2 6.8 55 219-273 2-60 (166)
245 CHL00189 infB translation init 97.9 1.3E-05 2.7E-10 86.0 5.3 57 215-272 242-305 (742)
246 cd04132 Rho4_like Rho4-like su 97.9 2.4E-05 5.2E-10 69.6 6.4 54 218-272 1-59 (187)
247 TIGR00491 aIF-2 translation in 97.9 1.5E-05 3.2E-10 83.8 5.5 36 217-254 4-40 (590)
248 cd04170 EF-G_bact Elongation f 97.9 1.3E-05 2.8E-10 76.2 4.7 22 219-240 1-22 (268)
249 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.9 3.8E-05 8.2E-10 68.5 7.4 103 86-198 50-166 (183)
250 cd04159 Arl10_like Arl10-like 97.9 4.2E-05 9.1E-10 65.1 7.4 91 108-198 55-157 (159)
251 cd04150 Arf1_5_like Arf1-Arf5- 97.9 2.6E-05 5.7E-10 67.9 6.2 103 86-197 42-156 (159)
252 cd04146 RERG_RasL11_like RERG/ 97.9 2.1E-05 4.6E-10 68.4 5.6 54 219-274 1-59 (165)
253 cd04107 Rab32_Rab38 Rab38/Rab3 97.9 2.7E-05 5.9E-10 70.5 6.4 53 219-272 2-60 (201)
254 cd04127 Rab27A Rab27a subfamil 97.9 2.8E-05 6E-10 68.6 6.3 25 217-241 4-28 (180)
255 TIGR03598 GTPase_YsxC ribosome 97.9 9.6E-05 2.1E-09 65.6 9.7 72 119-190 99-178 (179)
256 PRK00454 engB GTP-binding prot 97.9 0.00038 8.2E-09 62.2 13.6 114 88-201 70-193 (196)
257 cd04145 M_R_Ras_like M-Ras/R-R 97.9 8.5E-05 1.8E-09 64.2 9.1 102 87-197 49-159 (164)
258 smart00176 RAN Ran (Ras-relate 97.9 6.9E-05 1.5E-09 68.2 8.8 104 85-197 41-149 (200)
259 cd04111 Rab39 Rab39 subfamily. 97.9 2.8E-05 6E-10 71.3 6.1 55 218-273 3-63 (211)
260 PTZ00369 Ras-like protein; Pro 97.9 2.3E-05 4.9E-10 70.3 5.4 56 217-273 5-64 (189)
261 cd04127 Rab27A Rab27a subfamil 97.8 6.2E-05 1.3E-09 66.4 8.2 104 87-199 62-174 (180)
262 cd04107 Rab32_Rab38 Rab38/Rab3 97.8 0.00013 2.9E-09 65.9 10.4 104 86-198 48-164 (201)
263 PRK12739 elongation factor G; 97.8 2.4E-05 5.3E-10 84.1 6.4 58 217-274 8-85 (691)
264 cd04166 CysN_ATPS CysN_ATPS su 97.8 9.6E-05 2.1E-09 67.5 9.3 89 104-193 85-185 (208)
265 cd04122 Rab14 Rab14 subfamily. 97.8 0.00011 2.3E-09 64.1 9.1 98 86-194 49-156 (166)
266 cd01897 NOG NOG1 is a nucleola 97.8 7.4E-05 1.6E-09 65.0 8.1 79 120-198 79-164 (168)
267 cd04108 Rab36_Rab34 Rab34/Rab3 97.8 3.8E-05 8.3E-10 67.7 6.3 54 219-273 2-60 (170)
268 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.8 8.7E-05 1.9E-09 65.5 8.5 102 87-197 58-171 (174)
269 cd04121 Rab40 Rab40 subfamily. 97.8 6.5E-05 1.4E-09 67.7 7.8 100 86-197 53-162 (189)
270 PLN03108 Rab family protein; P 97.8 5.1E-05 1.1E-09 69.4 7.2 57 217-273 6-66 (210)
271 PRK04004 translation initiatio 97.8 3.2E-05 6.8E-10 81.4 6.5 37 216-254 5-42 (586)
272 smart00177 ARF ARF-like small 97.8 4.3E-05 9.3E-10 67.7 6.5 55 217-273 13-68 (175)
273 cd00878 Arf_Arl Arf (ADP-ribos 97.8 8.6E-05 1.9E-09 64.0 8.2 102 87-197 42-155 (158)
274 cd01883 EF1_alpha Eukaryotic e 97.8 9.7E-05 2.1E-09 68.1 9.0 87 104-191 85-194 (219)
275 PF02421 FeoB_N: Ferrous iron 97.8 1.5E-05 3.2E-10 69.7 3.3 76 119-196 77-155 (156)
276 cd01867 Rab8_Rab10_Rab13_like 97.8 0.00012 2.5E-09 64.0 9.0 100 87-197 51-160 (167)
277 cd04120 Rab12 Rab12 subfamily. 97.8 0.00013 2.7E-09 66.6 9.5 104 84-196 45-157 (202)
278 TIGR00485 EF-Tu translation el 97.8 3.8E-05 8.3E-10 77.2 6.6 58 216-273 11-86 (394)
279 cd04132 Rho4_like Rho4-like su 97.8 0.00018 3.8E-09 64.0 10.2 104 87-199 48-164 (187)
280 cd04147 Ras_dva Ras-dva subfam 97.8 3.9E-05 8.5E-10 69.3 6.0 53 219-273 1-58 (198)
281 smart00175 RAB Rab subfamily o 97.8 9.9E-05 2.1E-09 63.6 8.3 101 88-199 49-159 (164)
282 smart00174 RHO Rho (Ras homolo 97.8 4.6E-05 1E-09 66.8 6.2 53 220-273 1-57 (174)
283 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.8 0.00017 3.7E-09 67.2 10.2 105 84-197 57-183 (232)
284 cd04110 Rab35 Rab35 subfamily. 97.8 9.7E-05 2.1E-09 66.8 8.4 103 88-199 55-164 (199)
285 cd04119 RJL RJL (RabJ-Like) su 97.8 8.9E-05 1.9E-09 64.0 7.8 104 85-197 46-162 (168)
286 cd04128 Spg1 Spg1p. Spg1p (se 97.8 0.00015 3.3E-09 64.8 9.5 105 85-198 46-162 (182)
287 PRK12736 elongation factor Tu; 97.8 3.5E-05 7.5E-10 77.5 5.8 57 216-272 11-85 (394)
288 PRK05506 bifunctional sulfate 97.8 2.5E-05 5.5E-10 83.2 5.1 27 216-242 23-49 (632)
289 cd04108 Rab36_Rab34 Rab34/Rab3 97.8 0.00012 2.6E-09 64.5 8.6 106 87-201 48-164 (170)
290 cd04148 RGK RGK subfamily. Th 97.8 4.4E-05 9.6E-10 70.5 6.0 55 219-273 2-61 (221)
291 PF08477 Miro: Miro-like prote 97.8 5E-05 1.1E-09 62.3 5.7 56 219-274 1-62 (119)
292 smart00177 ARF ARF-like small 97.8 6.1E-05 1.3E-09 66.7 6.7 104 86-198 55-170 (175)
293 cd01870 RhoA_like RhoA-like su 97.8 6.5E-05 1.4E-09 65.9 6.8 52 219-272 3-59 (175)
294 PLN03126 Elongation factor Tu; 97.8 4.5E-05 9.7E-10 78.4 6.5 58 216-273 80-155 (478)
295 TIGR02034 CysN sulfate adenyly 97.8 0.00022 4.7E-09 72.0 11.3 88 104-192 88-187 (406)
296 PF10662 PduV-EutP: Ethanolami 97.8 2.8E-05 6.1E-10 66.7 4.2 45 219-273 3-47 (143)
297 cd04117 Rab15 Rab15 subfamily. 97.8 6.9E-05 1.5E-09 65.2 6.8 54 219-273 2-60 (161)
298 cd01865 Rab3 Rab3 subfamily. 97.7 0.00013 2.9E-09 63.5 8.3 101 87-198 49-159 (165)
299 cd04126 Rab20 Rab20 subfamily. 97.7 5.4E-05 1.2E-09 70.0 6.0 54 218-273 1-55 (220)
300 PRK05433 GTP-binding protein L 97.7 0.0002 4.3E-09 75.7 11.1 93 104-200 82-182 (600)
301 cd01882 BMS1 Bms1. Bms1 is an 97.7 4.6E-05 1E-09 70.6 5.6 57 215-273 37-94 (225)
302 cd04105 SR_beta Signal recogni 97.7 6.1E-05 1.3E-09 68.7 6.3 53 219-273 2-59 (203)
303 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.7 0.00011 2.3E-09 63.9 7.5 102 87-197 50-159 (166)
304 cd01893 Miro1 Miro1 subfamily. 97.7 9.6E-05 2.1E-09 64.6 7.1 105 86-199 45-161 (166)
305 cd04138 H_N_K_Ras_like H-Ras/N 97.7 0.0001 2.2E-09 63.2 7.2 87 111-197 63-157 (162)
306 PRK12297 obgE GTPase CgtA; Rev 97.7 0.00014 3E-09 73.6 9.1 109 87-201 205-326 (424)
307 PLN00223 ADP-ribosylation fact 97.7 7.9E-05 1.7E-09 66.5 6.6 54 217-272 17-71 (181)
308 TIGR01393 lepA GTP-binding pro 97.7 0.0002 4.3E-09 75.6 10.7 104 88-200 70-178 (595)
309 cd00154 Rab Rab family. Rab G 97.7 0.00014 3.1E-09 61.6 8.0 102 87-197 48-157 (159)
310 PLN00223 ADP-ribosylation fact 97.7 9.4E-05 2E-09 66.0 7.0 103 86-197 59-173 (181)
311 cd01861 Rab6 Rab6 subfamily. 97.7 0.00013 2.8E-09 62.8 7.8 103 88-199 49-159 (161)
312 cd04158 ARD1 ARD1 subfamily. 97.7 5.6E-05 1.2E-09 66.3 5.4 102 86-197 41-156 (169)
313 COG4917 EutP Ethanolamine util 97.7 0.00026 5.6E-09 58.9 8.7 92 108-200 52-144 (148)
314 cd01868 Rab11_like Rab11-like. 97.7 0.00016 3.5E-09 62.7 8.1 102 87-197 51-160 (165)
315 cd04118 Rab24 Rab24 subfamily. 97.7 0.00011 2.4E-09 65.8 7.2 105 87-200 49-164 (193)
316 smart00173 RAS Ras subfamily o 97.7 0.00022 4.8E-09 61.7 8.9 103 86-197 46-157 (164)
317 cd04109 Rab28 Rab28 subfamily. 97.7 0.00014 3.1E-09 66.6 8.1 104 87-199 49-163 (215)
318 cd00882 Ras_like_GTPase Ras-li 97.7 4.2E-05 9.2E-10 63.6 4.2 52 222-274 1-57 (157)
319 PLN03071 GTP-binding nuclear p 97.7 0.00011 2.4E-09 67.7 7.3 58 216-273 12-73 (219)
320 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.7 0.00011 2.4E-09 64.9 7.0 54 218-273 3-61 (172)
321 cd04126 Rab20 Rab20 subfamily. 97.7 0.00013 2.9E-09 67.4 7.8 103 87-198 43-186 (220)
322 PRK10512 selenocysteinyl-tRNA- 97.7 6.7E-05 1.4E-09 79.5 6.5 54 219-272 2-61 (614)
323 cd00877 Ran Ran (Ras-related n 97.7 7.4E-05 1.6E-09 65.5 5.8 103 87-198 48-155 (166)
324 PF00350 Dynamin_N: Dynamin fa 97.7 5.9E-05 1.3E-09 65.9 5.1 31 220-250 1-31 (168)
325 cd04136 Rap_like Rap-like subf 97.7 0.00013 2.8E-09 62.9 7.2 103 86-197 47-158 (163)
326 cd04139 RalA_RalB RalA/RalB su 97.7 0.00019 4.2E-09 61.7 8.3 103 87-198 47-158 (164)
327 cd01866 Rab2 Rab2 subfamily. 97.7 0.0002 4.4E-09 62.6 8.4 100 87-197 52-161 (168)
328 cd04130 Wrch_1 Wrch-1 subfamil 97.7 8.4E-05 1.8E-09 65.4 5.9 54 218-273 1-59 (173)
329 PRK11058 GTPase HflX; Provisio 97.7 0.0005 1.1E-08 69.8 12.3 85 113-200 269-360 (426)
330 COG1100 GTPase SAR1 and relate 97.7 8.9E-05 1.9E-09 67.6 6.3 56 218-274 6-66 (219)
331 cd04169 RF3 RF3 subfamily. Pe 97.7 7.8E-05 1.7E-09 71.0 6.0 22 219-240 4-25 (267)
332 cd04123 Rab21 Rab21 subfamily. 97.7 0.00021 4.5E-09 61.3 8.2 102 88-198 49-158 (162)
333 cd01892 Miro2 Miro2 subfamily. 97.7 0.00014 3E-09 64.0 7.2 57 216-273 3-65 (169)
334 PLN03118 Rab family protein; P 97.6 0.00027 5.8E-09 64.5 9.2 105 86-199 60-174 (211)
335 PRK04213 GTP-binding protein; 97.6 0.0011 2.3E-08 59.8 13.0 110 89-199 53-189 (201)
336 TIGR00483 EF-1_alpha translati 97.6 0.0002 4.3E-09 72.7 9.0 97 87-192 84-197 (426)
337 cd04175 Rap1 Rap1 subgroup. T 97.6 0.00012 2.7E-09 63.5 6.5 103 86-197 47-158 (164)
338 PRK05124 cysN sulfate adenylyl 97.6 0.00028 6.1E-09 72.6 10.0 90 104-194 115-217 (474)
339 PRK12736 elongation factor Tu; 97.6 0.00049 1.1E-08 69.2 11.5 83 104-187 83-178 (394)
340 cd04162 Arl9_Arfrp2_like Arl9/ 97.6 9.7E-05 2.1E-09 64.7 5.6 52 220-273 2-55 (164)
341 cd01892 Miro2 Miro2 subfamily. 97.6 4.9E-05 1.1E-09 66.9 3.8 84 116-199 73-163 (169)
342 cd04162 Arl9_Arfrp2_like Arl9/ 97.6 0.00017 3.7E-09 63.1 7.2 103 85-196 41-160 (164)
343 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.6 0.00034 7.4E-09 62.6 9.2 105 83-196 48-174 (182)
344 cd04146 RERG_RasL11_like RERG/ 97.6 0.00014 3E-09 63.3 6.4 84 114-197 65-159 (165)
345 COG0218 Predicted GTPase [Gene 97.6 0.00091 2E-08 60.3 11.6 95 106-200 89-195 (200)
346 smart00174 RHO Rho (Ras homolo 97.6 0.0002 4.4E-09 62.6 7.4 104 86-198 44-168 (174)
347 cd04140 ARHI_like ARHI subfami 97.6 0.00017 3.6E-09 62.9 6.8 106 86-200 47-163 (165)
348 cd04142 RRP22 RRP22 subfamily. 97.6 0.00051 1.1E-08 62.3 10.2 111 85-197 46-169 (198)
349 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.6 0.00019 4E-09 63.4 7.1 104 84-196 46-158 (172)
350 cd04144 Ras2 Ras2 subfamily. 97.6 0.00031 6.6E-09 63.0 8.6 103 87-198 46-159 (190)
351 PTZ00133 ADP-ribosylation fact 97.6 0.00013 2.8E-09 65.1 6.0 104 86-198 59-174 (182)
352 PF00009 GTP_EFTU: Elongation 97.6 4.3E-05 9.4E-10 68.5 3.0 57 217-273 3-81 (188)
353 PRK12317 elongation factor 1-a 97.6 0.00028 6E-09 71.6 9.2 98 87-193 83-196 (425)
354 smart00178 SAR Sar1p-like memb 97.6 0.00014 3.1E-09 64.9 6.2 102 87-197 60-180 (184)
355 cd04134 Rho3 Rho3 subfamily. 97.6 0.00018 4E-09 64.4 6.9 54 219-273 2-59 (189)
356 PRK05506 bifunctional sulfate 97.6 0.00046 9.9E-09 73.6 10.9 88 104-192 112-211 (632)
357 TIGR00483 EF-1_alpha translati 97.6 0.00013 2.7E-09 74.2 6.3 57 216-272 6-95 (426)
358 cd01876 YihA_EngB The YihA (En 97.6 0.001 2.2E-08 57.0 11.1 82 119-200 80-169 (170)
359 PLN03108 Rab family protein; P 97.6 0.00046 1E-08 63.0 9.4 105 88-201 55-168 (210)
360 TIGR00485 EF-Tu translation el 97.6 0.001 2.2E-08 67.0 12.6 84 104-188 83-179 (394)
361 CHL00071 tufA elongation facto 97.6 0.00055 1.2E-08 69.2 10.8 85 103-188 82-179 (409)
362 cd01863 Rab18 Rab18 subfamily. 97.6 0.00026 5.7E-09 61.0 7.4 102 87-197 48-157 (161)
363 cd04133 Rop_like Rop subfamily 97.5 0.00025 5.4E-09 63.1 7.4 103 84-198 45-169 (176)
364 PLN03071 GTP-binding nuclear p 97.5 0.00013 2.9E-09 67.2 5.8 102 86-196 60-166 (219)
365 PRK05124 cysN sulfate adenylyl 97.5 0.0001 2.2E-09 75.8 5.5 25 216-240 26-50 (474)
366 cd01864 Rab19 Rab19 subfamily. 97.5 0.00038 8.2E-09 60.5 8.4 101 88-197 52-161 (165)
367 cd04114 Rab30 Rab30 subfamily. 97.5 0.00027 5.8E-09 61.5 7.3 102 88-198 56-165 (169)
368 CHL00189 infB translation init 97.5 0.00057 1.2E-08 73.5 11.0 97 104-201 303-409 (742)
369 cd01874 Cdc42 Cdc42 subfamily. 97.5 0.00025 5.5E-09 62.8 7.1 54 218-273 2-60 (175)
370 cd04131 Rnd Rnd subfamily. Th 97.5 0.00047 1E-08 61.4 8.8 105 84-197 45-171 (178)
371 cd04113 Rab4 Rab4 subfamily. 97.5 0.0004 8.6E-09 59.9 8.2 101 87-196 48-156 (161)
372 cd04176 Rap2 Rap2 subgroup. T 97.5 0.00018 4E-09 62.2 5.9 102 87-197 48-158 (163)
373 cd00879 Sar1 Sar1 subfamily. 97.5 0.00021 4.6E-09 63.7 6.5 103 87-198 62-187 (190)
374 cd00157 Rho Rho (Ras homology) 97.5 9.6E-05 2.1E-09 64.3 4.1 83 116-198 67-169 (171)
375 cd01874 Cdc42 Cdc42 subfamily. 97.5 0.00038 8.3E-09 61.6 8.0 105 84-197 45-170 (175)
376 cd00876 Ras Ras family. The R 97.5 0.00058 1.3E-08 58.3 8.9 93 104-197 55-156 (160)
377 cd04147 Ras_dva Ras-dva subfam 97.5 0.00037 8E-09 62.9 8.0 104 87-199 46-160 (198)
378 PTZ00369 Ras-like protein; Pro 97.5 0.00033 7.2E-09 62.7 7.5 102 87-197 52-162 (189)
379 COG5019 CDC3 Septin family pro 97.5 0.00014 3E-09 70.9 5.2 61 215-275 21-95 (373)
380 cd01871 Rac1_like Rac1-like su 97.5 0.00021 4.6E-09 63.2 6.0 53 218-272 2-59 (174)
381 KOG1489 Predicted GTP-binding 97.5 0.00042 9.1E-09 66.3 8.2 85 113-199 267-364 (366)
382 cd01873 RhoBTB RhoBTB subfamil 97.5 0.00037 8E-09 63.1 7.7 104 83-197 61-191 (195)
383 cd01860 Rab5_related Rab5-rela 97.5 0.00053 1.1E-08 59.1 8.3 103 86-197 48-158 (163)
384 cd04143 Rhes_like Rhes_like su 97.5 0.00014 3.1E-09 68.4 5.0 53 219-273 2-59 (247)
385 KOG0084 GTPase Rab1/YPT1, smal 97.5 0.00058 1.3E-08 61.0 8.5 99 86-193 56-163 (205)
386 KOG2655 Septin family protein 97.5 0.00014 3E-09 71.3 4.9 60 215-274 19-91 (366)
387 cd01883 EF1_alpha Eukaryotic e 97.5 0.00014 3E-09 67.1 4.5 55 219-273 1-88 (219)
388 cd01875 RhoG RhoG subfamily. 97.4 0.00063 1.4E-08 61.2 8.7 106 84-198 47-173 (191)
389 KOG0092 GTPase Rab5/YPT51 and 97.4 0.00016 3.5E-09 64.3 4.6 118 73-199 37-164 (200)
390 cd04148 RGK RGK subfamily. Th 97.4 0.00047 1E-08 63.6 7.9 103 85-199 47-160 (221)
391 PLN03110 Rab GTPase; Provision 97.4 0.00065 1.4E-08 62.4 8.8 101 86-197 59-169 (216)
392 cd04115 Rab33B_Rab33A Rab33B/R 97.4 0.00078 1.7E-08 59.0 9.0 108 86-202 49-166 (170)
393 cd04125 RabA_like RabA-like su 97.4 0.00052 1.1E-08 61.2 7.9 103 87-198 48-158 (188)
394 PRK12735 elongation factor Tu; 97.4 0.001 2.2E-08 67.0 10.7 84 104-188 83-179 (396)
395 TIGR00487 IF-2 translation ini 97.4 0.00053 1.2E-08 72.2 9.0 94 104-198 143-246 (587)
396 cd04117 Rab15 Rab15 subfamily. 97.4 0.00047 1E-08 60.0 7.2 103 86-197 47-157 (161)
397 TIGR00491 aIF-2 translation in 97.4 0.0013 2.8E-08 69.4 11.6 103 90-201 71-215 (590)
398 cd04128 Spg1 Spg1p. Spg1p (se 97.4 0.00045 9.7E-09 61.7 7.0 55 218-273 1-60 (182)
399 KOG1487 GTP-binding protein DR 97.4 0.0002 4.3E-09 66.7 4.7 57 218-275 60-119 (358)
400 cd01871 Rac1_like Rac1-like su 97.4 0.00041 8.9E-09 61.4 6.7 104 85-197 46-170 (174)
401 cd04167 Snu114p Snu114p subfam 97.4 0.00013 2.8E-09 66.8 3.5 23 219-241 2-24 (213)
402 cd04130 Wrch_1 Wrch-1 subfamil 97.4 0.00021 4.6E-09 62.8 4.6 104 84-196 44-168 (173)
403 PRK00049 elongation factor Tu; 97.4 0.0013 2.8E-08 66.3 10.7 85 103-188 82-179 (396)
404 PLN00043 elongation factor 1-a 97.4 0.00084 1.8E-08 68.6 9.3 88 103-191 92-202 (447)
405 PRK05306 infB translation init 97.3 0.00067 1.4E-08 73.5 8.9 95 104-199 345-449 (787)
406 cd01885 EF2 EF2 (for archaea a 97.3 0.0003 6.5E-09 65.1 5.5 23 219-241 2-24 (222)
407 TIGR02034 CysN sulfate adenyly 97.3 0.00017 3.6E-09 72.9 4.1 55 218-272 1-90 (406)
408 PTZ00132 GTP-binding nuclear p 97.3 0.00052 1.1E-08 62.7 7.0 57 216-272 8-68 (215)
409 cd04143 Rhes_like Rhes_like su 97.3 0.00083 1.8E-08 63.2 8.3 107 86-201 46-170 (247)
410 cd04111 Rab39 Rab39 subfamily. 97.3 0.00079 1.7E-08 61.6 8.0 104 87-199 51-163 (211)
411 TIGR00437 feoB ferrous iron tr 97.3 0.00082 1.8E-08 71.0 9.1 80 119-200 71-153 (591)
412 smart00053 DYNc Dynamin, GTPas 97.3 0.0005 1.1E-08 64.3 6.6 72 218-290 27-153 (240)
413 KOG0078 GTP-binding protein SE 97.3 0.00096 2.1E-08 60.3 8.1 90 102-193 66-165 (207)
414 TIGR00231 small_GTP small GTP- 97.3 0.00058 1.3E-08 57.4 6.5 52 147-198 108-160 (161)
415 COG0536 Obg Predicted GTPase [ 97.3 0.0015 3.3E-08 63.2 9.8 91 112-203 229-334 (369)
416 cd00882 Ras_like_GTPase Ras-li 97.3 0.001 2.3E-08 55.0 7.8 102 87-197 44-155 (157)
417 PTZ00141 elongation factor 1- 97.3 0.0012 2.5E-08 67.6 9.5 87 104-192 93-203 (446)
418 cd04116 Rab9 Rab9 subfamily. 97.3 0.0013 2.8E-08 57.3 8.6 103 85-196 51-165 (170)
419 cd04134 Rho3 Rho3 subfamily. 97.3 0.00074 1.6E-08 60.5 7.1 106 84-198 44-170 (189)
420 cd04155 Arl3 Arl3 subfamily. 97.3 0.00056 1.2E-08 59.7 6.2 102 87-197 57-170 (173)
421 PF00071 Ras: Ras family; Int 97.3 0.00076 1.7E-08 58.1 6.9 53 219-272 1-58 (162)
422 cd04131 Rnd Rnd subfamily. Th 97.3 0.00059 1.3E-08 60.8 6.3 54 218-272 2-59 (178)
423 TIGR03680 eif2g_arch translati 97.3 0.00029 6.3E-09 71.1 4.7 25 216-240 3-27 (406)
424 KOG1423 Ras-like GTPase ERA [C 97.3 0.0012 2.7E-08 62.9 8.4 89 113-201 148-270 (379)
425 TIGR01394 TypA_BipA GTP-bindin 97.2 0.0016 3.5E-08 68.8 9.9 84 104-188 72-167 (594)
426 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.2 0.0019 4.2E-08 59.7 9.3 106 82-196 43-170 (222)
427 PLN03127 Elongation factor Tu; 97.2 0.0023 4.9E-08 65.4 10.6 61 103-164 131-194 (447)
428 cd04129 Rho2 Rho2 subfamily. 97.2 0.00076 1.6E-08 60.3 6.4 54 219-273 3-60 (187)
429 KOG1249 Predicted GTPases [Gen 97.2 0.00012 2.5E-09 74.2 1.1 83 218-300 310-403 (572)
430 PRK14845 translation initiatio 97.2 0.0023 5E-08 71.2 11.1 104 90-202 528-673 (1049)
431 TIGR01393 lepA GTP-binding pro 97.2 0.00048 1E-08 72.8 5.5 56 219-274 5-82 (595)
432 COG2895 CysN GTPases - Sulfate 97.2 0.00082 1.8E-08 65.2 6.5 95 88-191 86-192 (431)
433 cd04121 Rab40 Rab40 subfamily. 97.2 0.00086 1.9E-08 60.4 6.4 56 217-273 6-66 (189)
434 PRK10218 GTP-binding protein; 97.2 0.00066 1.4E-08 71.7 6.5 57 218-274 6-80 (607)
435 PRK04004 translation initiatio 97.2 0.0031 6.7E-08 66.6 11.3 100 90-198 73-214 (586)
436 cd01870 RhoA_like RhoA-like su 97.2 0.00081 1.8E-08 58.8 5.9 106 84-198 45-171 (175)
437 PRK09554 feoB ferrous iron tra 97.2 0.0014 3.1E-08 71.1 8.9 81 119-201 84-167 (772)
438 COG3276 SelB Selenocysteine-sp 97.1 0.003 6.5E-08 63.1 10.2 99 103-202 57-162 (447)
439 COG5257 GCD11 Translation init 97.1 0.0022 4.8E-08 61.6 8.9 98 103-201 93-201 (415)
440 KOG0095 GTPase Rab30, small G 97.1 0.0014 3E-08 56.0 6.8 125 60-193 26-160 (213)
441 cd04120 Rab12 Rab12 subfamily. 97.1 0.00095 2.1E-08 60.8 6.2 54 219-273 2-60 (202)
442 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.1 0.00077 1.7E-08 62.4 5.6 54 218-272 2-59 (222)
443 COG0532 InfB Translation initi 97.1 0.003 6.4E-08 64.5 10.0 97 104-203 63-171 (509)
444 KOG0088 GTPase Rab21, small G 97.1 0.00066 1.4E-08 58.6 4.6 108 82-198 56-171 (218)
445 cd04137 RheB Rheb (Ras Homolog 97.1 0.004 8.6E-08 54.8 9.7 104 87-199 48-160 (180)
446 KOG1145 Mitochondrial translat 97.1 0.0034 7.4E-08 64.1 10.0 96 104-202 209-316 (683)
447 PF00025 Arf: ADP-ribosylation 97.1 0.00074 1.6E-08 59.9 4.8 55 216-272 13-68 (175)
448 TIGR00450 mnmE_trmE_thdF tRNA 97.1 0.0029 6.2E-08 64.6 9.6 79 114-197 276-355 (442)
449 cd04102 RabL3 RabL3 (Rab-like3 97.1 0.0014 3.1E-08 59.7 6.7 56 218-273 1-65 (202)
450 cd04161 Arl2l1_Arl13_like Arl2 97.1 0.0012 2.7E-08 57.8 6.1 93 86-187 41-148 (167)
451 cd01888 eIF2_gamma eIF2-gamma 97.0 0.00098 2.1E-08 60.6 5.4 22 219-240 2-23 (203)
452 cd04135 Tc10 TC10 subfamily. 97.0 0.00092 2E-08 58.4 4.7 81 116-196 67-168 (174)
453 PTZ00141 elongation factor 1- 97.0 0.0012 2.5E-08 67.6 6.0 58 216-273 6-96 (446)
454 cd04133 Rop_like Rop subfamily 97.0 0.0015 3.3E-08 58.1 6.1 54 218-273 2-60 (176)
455 COG2229 Predicted GTPase [Gene 97.0 0.005 1.1E-07 54.6 9.1 89 103-192 75-168 (187)
456 PLN03126 Elongation factor Tu; 97.0 0.0045 9.9E-08 63.7 10.2 85 103-188 151-248 (478)
457 PTZ00416 elongation factor 2; 97.0 0.0013 2.7E-08 72.4 6.5 35 219-253 21-55 (836)
458 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.0 0.0017 3.6E-08 60.6 6.4 55 217-272 13-71 (232)
459 TIGR01394 TypA_BipA GTP-bindin 97.0 0.0011 2.5E-08 69.9 5.9 55 219-273 3-75 (594)
460 KOG0462 Elongation factor-type 96.9 0.0015 3.2E-08 66.6 6.0 94 103-197 132-230 (650)
461 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.9 0.0022 4.7E-08 57.4 6.4 54 217-272 5-63 (182)
462 PRK10218 GTP-binding protein; 96.9 0.0045 9.7E-08 65.5 9.7 94 87-189 67-172 (607)
463 KOG0098 GTPase Rab2, small G p 96.9 0.0057 1.2E-07 54.4 8.5 120 62-193 27-159 (216)
464 TIGR00503 prfC peptide chain r 96.9 0.002 4.4E-08 67.1 6.5 21 218-238 12-32 (527)
465 COG0370 FeoB Fe2+ transport sy 96.8 0.0011 2.4E-08 69.4 4.2 83 119-201 80-163 (653)
466 cd04103 Centaurin_gamma Centau 96.8 0.002 4.4E-08 56.1 5.3 52 219-273 2-58 (158)
467 PLN00023 GTP-binding protein; 96.8 0.0031 6.7E-08 61.4 7.0 56 217-272 21-93 (334)
468 cd01875 RhoG RhoG subfamily. 96.8 0.003 6.6E-08 56.7 6.5 56 217-273 3-62 (191)
469 cd04103 Centaurin_gamma Centau 96.8 0.0049 1.1E-07 53.6 7.3 99 84-196 43-153 (158)
470 KOG0093 GTPase Rab3, small G p 96.8 0.004 8.7E-08 53.2 6.3 101 86-197 68-178 (193)
471 cd01882 BMS1 Bms1. Bms1 is an 96.7 0.0097 2.1E-07 55.1 9.5 76 112-187 95-181 (225)
472 KOG0081 GTPase Rab27, small G 96.7 0.024 5.2E-07 49.2 10.9 105 87-200 66-179 (219)
473 COG5256 TEF1 Translation elong 96.7 0.006 1.3E-07 60.5 8.3 137 44-193 38-202 (428)
474 TIGR00490 aEF-2 translation el 96.7 0.0015 3.2E-08 70.7 4.5 57 218-274 20-98 (720)
475 PLN00116 translation elongatio 96.7 0.0029 6.4E-08 69.6 6.8 26 218-243 20-45 (843)
476 KOG0394 Ras-related GTPase [Ge 96.7 0.0062 1.3E-07 54.0 7.3 110 73-194 41-170 (210)
477 PTZ00132 GTP-binding nuclear p 96.7 0.0052 1.1E-07 56.1 7.1 100 87-195 57-161 (215)
478 cd04177 RSR1 RSR1 subgroup. R 96.7 0.0044 9.6E-08 54.0 6.3 102 86-196 47-158 (168)
479 PRK00741 prfC peptide chain re 96.6 0.0022 4.9E-08 66.8 4.9 53 219-271 12-88 (526)
480 KOG0079 GTP-binding protein H- 96.6 0.0099 2.1E-07 50.9 7.8 104 82-197 51-164 (198)
481 PRK13351 elongation factor G; 96.6 0.0022 4.7E-08 69.2 4.8 57 218-274 9-85 (687)
482 PRK09435 membrane ATPase/prote 96.6 0.017 3.7E-07 56.7 10.6 105 82-201 143-259 (332)
483 cd01896 DRG The developmentall 96.6 0.0079 1.7E-07 56.0 8.0 47 148-199 177-223 (233)
484 cd01886 EF-G Elongation factor 96.6 0.0087 1.9E-07 57.1 8.3 57 104-161 72-130 (270)
485 PRK07560 elongation factor EF- 96.6 0.0041 9E-08 67.5 6.5 22 219-240 22-43 (731)
486 cd01885 EF2 EF2 (for archaea a 96.5 0.0079 1.7E-07 55.7 7.5 56 104-160 81-138 (222)
487 PF09439 SRPRB: Signal recogni 96.5 0.0016 3.4E-08 58.3 2.7 92 219-312 5-105 (181)
488 KOG0075 GTP-binding ADP-ribosy 96.5 0.017 3.6E-07 49.5 8.6 120 80-199 47-179 (186)
489 PF04670 Gtr1_RagA: Gtr1/RagA 96.5 0.0036 7.8E-08 58.3 5.1 56 219-274 1-60 (232)
490 PRK05433 GTP-binding protein L 96.5 0.0034 7.3E-08 66.5 5.1 56 219-274 9-86 (600)
491 PF00025 Arf: ADP-ribosylation 96.5 0.00097 2.1E-08 59.1 0.9 102 86-196 56-170 (175)
492 KOG0073 GTP-binding ADP-ribosy 96.5 0.0053 1.1E-07 53.5 5.3 35 217-251 16-50 (185)
493 PRK04000 translation initiatio 96.5 0.0036 7.7E-08 63.4 4.9 40 216-255 8-49 (411)
494 KOG0461 Selenocysteine-specifi 96.4 0.011 2.4E-07 57.4 7.8 95 103-199 77-190 (522)
495 KOG0394 Ras-related GTPase [Ge 96.4 0.0034 7.3E-08 55.7 3.9 58 216-273 8-69 (210)
496 cd04165 GTPBP1_like GTPBP1-lik 96.3 0.0072 1.6E-07 56.0 5.9 21 219-239 1-21 (224)
497 smart00176 RAN Ran (Ras-relate 96.3 0.0072 1.6E-07 55.0 5.7 51 223-273 1-55 (200)
498 cd04167 Snu114p Snu114p subfam 96.3 0.011 2.3E-07 54.1 6.8 64 88-160 71-136 (213)
499 KOG1191 Mitochondrial GTPase [ 96.3 0.0057 1.2E-07 61.8 5.3 88 110-197 338-445 (531)
500 PF00071 Ras: Ras family; Int 96.3 0.0052 1.1E-07 52.8 4.4 102 84-194 44-153 (162)
No 1
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=1.7e-54 Score=415.30 Aligned_cols=277 Identities=41% Similarity=0.721 Sum_probs=245.6
Q ss_pred CcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCe
Q 016762 99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178 (383)
Q Consensus 99 ~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~ 178 (383)
.++||||||.+..+++.++++.+|+||+|+|+|.|.++.+..+..++.++|+++|+||+||++......|.+++++.+..
T Consensus 3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~ 82 (287)
T PRK09563 3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK 82 (287)
T ss_pred cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence 37899999999999999999999999999999999999999898888889999999999999877778899888766777
Q ss_pred EEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE
Q 016762 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV 258 (383)
Q Consensus 179 vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~ 258 (383)
++++|++++.|+.+|.+.+.++......+.+.++.....+++++||+||||||||||+|++++.+.+++.||+|++.+++
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 162 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI 162 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence 89999999999999988887776543332333333445688999999999999999999999888999999999999999
Q ss_pred EeCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHH
Q 016762 259 RFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV 338 (383)
Q Consensus 259 ~~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl 338 (383)
+++..+.|+||||++.+...+.+.+.+++++++|++..++..+++++++..+.+. +++.+...|+++....+.++|+
T Consensus 163 ~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~---~~~~l~~~y~~~~~~~~~~~~l 239 (287)
T PRK09563 163 KLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKH---YPERLKERYKLDELPEDILELL 239 (287)
T ss_pred EeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhh---CHHHHHHHhCCCCCCCCHHHHH
Confidence 9999999999999999988888899999999999999999999999999999886 5778999999975445789999
Q ss_pred HHHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCCCCC
Q 016762 339 QKLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPPRLS 378 (383)
Q Consensus 339 ~~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~~~ 378 (383)
+.+|++. ++| |+++||+.||+||++||||+||||.||..+
T Consensus 240 ~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld~~~~~~ 285 (287)
T PRK09563 240 EAIARKRGALRKGGEIDYERASELLLNEFRNGKLGKITLETPEMAE 285 (287)
T ss_pred HHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCcEEccCCcccc
Confidence 9999874 345 999999999999999999999999998754
No 2
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=3e-53 Score=404.63 Aligned_cols=270 Identities=43% Similarity=0.701 Sum_probs=240.5
Q ss_pred cCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeE
Q 016762 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (383)
Q Consensus 100 ~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~v 179 (383)
+|||||||.+..+++.+.++.+|+||+|+|+|.|.++.+..+++++.++|+++|+||+||+++.....|.+++++.+..+
T Consensus 1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v 80 (276)
T TIGR03596 1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA 80 (276)
T ss_pred CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence 47999999999999999999999999999999999999999988888899999999999998877788988887667788
Q ss_pred EEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE
Q 016762 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (383)
Q Consensus 180 i~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (383)
+++|++.+.|+.+|.+.+.++........+.++.....+++++||+||||||||||+|++++.+.+++.||+|++.+++.
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~ 160 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK 160 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE
Confidence 99999999999999888877665433333333334456889999999999999999999988889999999999999999
Q ss_pred eCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHH
Q 016762 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (383)
Q Consensus 260 ~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~ 339 (383)
++.++.|+||||++.+...+.+.++++++++++++..++..+++++++..+++. +++.+...|+++....+..+|++
T Consensus 161 ~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~i~~~~~~~~~~l~ 237 (276)
T TIGR03596 161 LSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEH---YPERLKERYKLDELPEDIVELLE 237 (276)
T ss_pred eCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhh---CHHHHHHHhCcCCCCCCHHHHHH
Confidence 988999999999999999899999999999999999999999999999999886 56789999999865557899999
Q ss_pred HHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceecc
Q 016762 340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLE 372 (383)
Q Consensus 340 ~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~ 372 (383)
.+|++. ++| |+++||+.||+||++||||+||||
T Consensus 238 ~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld 276 (276)
T TIGR03596 238 AIAKKRGCLLKGGELDLDRAAEILLNDFRKGKLGRITLE 276 (276)
T ss_pred HHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCceecC
Confidence 999874 344 999999999999999999999986
No 3
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=2.4e-46 Score=363.35 Aligned_cols=276 Identities=37% Similarity=0.660 Sum_probs=231.1
Q ss_pred CCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHc-C
Q 016762 98 RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-G 176 (383)
Q Consensus 98 ~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-g 176 (383)
..+|||||||.++.+++.++++.+|+|++|+|||+|.+++++.++++..+++.++|+||+||++...+..|.+++.+. +
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~ 91 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG 91 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999887 5
Q ss_pred CeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE
Q 016762 177 TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (383)
Q Consensus 177 ~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~ 256 (383)
...++++++.+.+...+...+..+.+..-...+.++......+|++|||||||||||||+|.+++.+.+++.||+|++.|
T Consensus 92 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q 171 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ 171 (322)
T ss_pred CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE
Confidence 66788999888888887765555533222223334444556789999999999999999999999999999999999999
Q ss_pred EEEeCCcEEEEecCccccCCCCc-HHHHHHHHHhcccccCccChHHHHHHHHHHH--hcCCCCCHHHHHH-HcCCCC-CC
Q 016762 257 WVRFGKDLEFLDSPGIIPMRISD-QAAAIKLAICDDIGERSYDVADVAAILVQML--ARIPTVGITALQN-RYKIDM-DG 331 (383)
Q Consensus 257 ~~~~~~~i~l~DTpG~i~~~~~~-~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l--~~~~~~~~~~l~~-~y~i~~-~~ 331 (383)
+++++..++|+||||++++...+ ...+.+++..++|++.+++...++.+++..+ +.+ +.+.+.. .|.... ..
T Consensus 172 ~i~~~~~i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~y~~~~~~~ 248 (322)
T COG1161 172 WIKLDDGIYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLLIDEH---YGEKLNITRYESNPIHR 248 (322)
T ss_pred EEEcCCCeEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhhhhhhh---hhHhhCCcccccccccc
Confidence 99999999999999999998877 7888899999999999999999998888766 332 2333332 233221 12
Q ss_pred CCHHHHHHHHHHHh-----CCC--cHHHHHHHHHHHHhcCCCCceeccCCCC
Q 016762 332 TCGKTFVQKLALHL-----FNG--DTHQAAFRILTDFRKGKFGWISLERPPR 376 (383)
Q Consensus 332 ~~~~~fl~~~a~~~-----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~ 376 (383)
.+.++|++.++.+. ++| |+++||+.+++||+.|+||++++|.+++
T Consensus 249 ~~~~~~l~~~a~~rg~~l~~~g~~d~~~~~~~~~~d~~~gklg~~~~~~~~~ 300 (322)
T COG1161 249 TDPEEFLELIAKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWFSLEEPED 300 (322)
T ss_pred cCHHHHHHHHHHHhhhhhcCCCCccHHHHHHHHHHHHHhCCcceeecCCccc
Confidence 35678888888654 233 9999999999999999999999987654
No 4
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=4.6e-45 Score=349.01 Aligned_cols=270 Identities=35% Similarity=0.564 Sum_probs=210.7
Q ss_pred CCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHHHHHHHH
Q 016762 95 KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWAT 170 (383)
Q Consensus 95 ~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~ 170 (383)
.+..+.+|++++...+.+++.++++.+||||||+|||+|+++++.+.++++ ++|++|+|+||+||+|++.++.|..
T Consensus 121 ~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~ 200 (435)
T KOG2484|consen 121 EEYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLV 200 (435)
T ss_pred HHhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999987 4799999999999999999999999
Q ss_pred HHHHcCCeEEEeeCcCCCch--hhhh--HH--HHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccc
Q 016762 171 YFAKQGTKVIFSNGQLGMGT--MKLS--RL--AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244 (383)
Q Consensus 171 ~l~~~g~~vi~iSa~~g~Gi--~~L~--~~--l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~ 244 (383)
||++.|..++|.++..+.+. ..+. .. ...+..... .....+.....++|||||||||||||+||+|..++.|.
T Consensus 201 YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lg-ny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~ 279 (435)
T KOG2484|consen 201 YLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLG-NYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACN 279 (435)
T ss_pred HHHhhCCcceeecccccccccccccccchhhhHHHHHHHhc-CcccccccCcceEeeeecCCCCChhHHHHHHHHhcccc
Confidence 99999999999877654433 1111 00 000111111 11222334567899999999999999999999999999
Q ss_pred cCCCCCceeEEEEEEeCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016762 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNR 324 (383)
Q Consensus 245 v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~ 324 (383)
|++.||.|+..|+++++.++.|+|+||++++...+.. ++.|..|..+..-..+...+..+ |.++ ..+.+...
T Consensus 280 vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~~-~~~Lrn~~~i~~~~dp~~~v~~i----L~~~---~~e~~~~~ 351 (435)
T KOG2484|consen 280 VGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD-ALALRNCIPIGKVADPVTPVSCI----LKRC---SKESRSVL 351 (435)
T ss_pred CCCCccchhhhhheeccCCceeccCCceeecCCCccc-hhhhhcccccccccCccchHHHH----HHHh---hHHHHHHH
Confidence 9999999999999999999999999999988776654 44444444443323333333333 3333 23678888
Q ss_pred cCCCCCCCCHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCCC
Q 016762 325 YKIDMDGTCGKTFVQKLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPPR 376 (383)
Q Consensus 325 y~i~~~~~~~~~fl~~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~ 376 (383)
|.++. .....+|+..+|+++ +|| |++.||+.||+||+.|||+|||+ ||.
T Consensus 352 Y~~~~-~~~~~~Fl~~~ar~~G~~~kGG~pd~~~AA~~vl~Dw~~Gki~y~~~--pp~ 406 (435)
T KOG2484|consen 352 YNIPS-IRATDDFLEKFARRRGLLLKGGIPDVNAAAFAVLNDWRTGKIGYYTL--PPT 406 (435)
T ss_pred hcCCC-cchHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHhhccCceeeeeC--CCh
Confidence 98873 345678998888753 466 99999999999999999999996 543
No 5
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=5.1e-45 Score=352.12 Aligned_cols=222 Identities=21% Similarity=0.225 Sum_probs=179.4
Q ss_pred ccccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-H
Q 016762 43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D 116 (383)
Q Consensus 43 ~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~ 116 (383)
.+|+|+..||+|||++| .++|+|.+|||+||||+||+|+ .++..++|+||||++|+|+| .+|+++.++ +
T Consensus 20 ~~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~~LsP~Q-----~~NLe~~l~~k 94 (411)
T COG2262 20 ESLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDHELSPSQ-----LRNLEKELGVK 94 (411)
T ss_pred hhHHHHHHHHHHcCCeEeeeEEEeccCCCcceecCcchHHHHHHHHHhcCCCEEEECCcCCHHH-----HHHHHHHHCCE
Confidence 49999999999999999 9999999999999999999965 78889999999999999999 999999998 8
Q ss_pred HhhhcCeEEEEEecCCCC--CCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762 117 QLKLMDVVIEVRDARIPL--STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (383)
Q Consensus 117 ~idr~DlILeV~DaR~p~--~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~ 194 (383)
+|||+.+||+||..|+.. +..+.+++++.+..|++. ..| ..+++.|+++ +..|.|..++.
T Consensus 95 VIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~-------------~~~-~~l~~~Gggi----G~rGpGE~~lE 156 (411)
T COG2262 95 VIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLV-------------GSG-SHLSRLGGGI----GFRGPGETQLE 156 (411)
T ss_pred EEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhH-------------hhh-hhcccccCCC----CCCCCCchHHH
Confidence 999999999999766554 445556777777777762 344 5666677555 66788877652
Q ss_pred --------------HHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe
Q 016762 195 --------------RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260 (383)
Q Consensus 195 --------------~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~ 260 (383)
+.++++.+.+...|++|. ....+.|++|||||||||||+|+|++.. +.+.+++|+|+|++++++
T Consensus 157 ~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~-~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~ 234 (411)
T COG2262 157 TDRRRIRRRIAKLKRELENVEKAREPRRKKRS-RSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRI 234 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEE
Confidence 223333333333343333 2345679999999999999999999764 789999999999887665
Q ss_pred ----CCcEEEEecCccccCCCCcHHHHHHHHHh
Q 016762 261 ----GKDLEFLDSPGIIPMRISDQAAAIKLAIC 289 (383)
Q Consensus 261 ----~~~i~l~DTpG~i~~~~~~~~~~~~la~~ 289 (383)
+..++|+||+|||...|+...+||+-.+.
T Consensus 235 ~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 235 ELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred EeCCCceEEEecCccCcccCChHHHHHHHHHHH
Confidence 35799999999999999999999995544
No 6
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=100.00 E-value=3.6e-39 Score=300.81 Aligned_cols=279 Identities=29% Similarity=0.422 Sum_probs=213.4
Q ss_pred EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHH
Q 016762 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWA 169 (383)
Q Consensus 90 ~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~ 169 (383)
.++|-.-=.|+.||||||.++.+.+.+.+..+|+|+||.|||.|++++++.+.+.+..+++|+|+||+||+++.+.....
T Consensus 16 ~~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~i 95 (335)
T KOG2485|consen 16 AVIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKII 95 (335)
T ss_pred cccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHH
Confidence 35555566788999999999999999999999999999999999999999999999999999999999999977777777
Q ss_pred HHHHHcCCe-EEEeeCcC--CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhh-----cCC
Q 016762 170 TYFAKQGTK-VIFSNGQL--GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL-----KRR 241 (383)
Q Consensus 170 ~~l~~~g~~-vi~iSa~~--g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~-----~~~ 241 (383)
+++..++.. +++.++.. ..++..+...+..+..+....- +.......|++||.||||||||||++. .++
T Consensus 96 q~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~i---rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k 172 (335)
T KOG2485|consen 96 QYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFI---RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKK 172 (335)
T ss_pred HHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhh---cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhcc
Confidence 888766533 33344433 2335566555544443322211 112345789999999999999999985 246
Q ss_pred ccccCCCCCceeEEEE-EEe--CCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCH
Q 016762 242 MCPAAPRPGVTRVLKW-VRF--GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGI 318 (383)
Q Consensus 242 ~~~v~~~pgtT~~~~~-~~~--~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~ 318 (383)
.+.|++.||+|+.++. +++ ...++++||||++.|.+.+.+.+++||+|++++++.+++..+++|+++.++++..+..
T Consensus 173 ~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~~~~y 252 (335)
T KOG2485|consen 173 AARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHSDFSY 252 (335)
T ss_pred ceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccCcchh
Confidence 6789999999999875 565 4569999999999999999999999999999999999999999999999999865432
Q ss_pred HHHHHHcCCCC-CCCCHHHHHHHHHHHh-C-------CC---------cHHHHHHHHHHHHhcCCCCceeccCC
Q 016762 319 TALQNRYKIDM-DGTCGKTFVQKLALHL-F-------NG---------DTHQAAFRILTDFRKGKFGWISLERP 374 (383)
Q Consensus 319 ~~l~~~y~i~~-~~~~~~~fl~~~a~~~-~-------~g---------D~~~Aa~~iL~d~~~Gklg~~~l~~p 374 (383)
- +.++... ..++.+.-+..++.+. + .| ++-.+|+.+++-||+|.+|...++..
T Consensus 253 ~---~~l~~~~~~~dd~~~nl~~l~v~~~~~~k~s~fdg~~~~ei~~~~~ln~~e~~l~~~rsg~l~~~~ln~~ 323 (335)
T KOG2485|consen 253 V---KDLKPGSTPADDIEQNLAVLAVRRTKNEKVSAFDGNNKLEIEQPNLLNLARFFLATFRSGLLGPEELNYV 323 (335)
T ss_pred H---HHhccCCCccccHHHHHHHHHHHHHhcceeeEecCCceeEEechHHHHHHHHHHHHHHhccccceeecch
Confidence 2 2223221 1223333344455332 1 12 36789999999999999997665543
No 7
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=100.00 E-value=2.9e-39 Score=317.44 Aligned_cols=258 Identities=24% Similarity=0.363 Sum_probs=190.9
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEee
Q 016762 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSN 183 (383)
Q Consensus 108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iS 183 (383)
-.++++++++++++|+|+.|+|||+|+..+++.++.+.. .|..++++||+||++++++..|.+||++.++.++|.|
T Consensus 162 LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~S 241 (562)
T KOG1424|consen 162 LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFS 241 (562)
T ss_pred HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEe
Confidence 357999999999999999999999999999999999986 4778999999999999999999999999999999999
Q ss_pred CcC----CC--chhhh----------hH---------HHHHhh---hhhhhhhhcc----------C-CCCCceEEeEee
Q 016762 184 GQL----GM--GTMKL----------SR---------LAKALA---SDVNVKRRSK----------G-LLPRAVRAGIVG 224 (383)
Q Consensus 184 a~~----g~--Gi~~L----------~~---------~l~~l~---~~~~~~~~~~----------~-~~~~~~~v~lvG 224 (383)
+.. +. ++.+- .. .+.+.. ......+..+ + .....++||+||
T Consensus 242 A~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VG 321 (562)
T KOG1424|consen 242 ALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVG 321 (562)
T ss_pred cccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeec
Confidence 865 11 11110 00 000000 0000000000 0 011247899999
Q ss_pred cCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHH
Q 016762 225 YPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304 (383)
Q Consensus 225 ~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~ 304 (383)
||||||||+||+|.|++++.|+.+||.|+++|++.+...+.|+||||+++|.+......+ ++. .++.++++.+
T Consensus 322 YPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~em---vl~----GiLPIDQmrd 394 (562)
T KOG1424|consen 322 YPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEM---VLN----GILPIDQLRD 394 (562)
T ss_pred CCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHHH---HHh----cCccHHHhhc
Confidence 999999999999999999999999999999999999999999999999999775422211 222 3345555544
Q ss_pred HH--H-HHHhcCCCCCHHHHHHHcCCC-------CCCCCHHHHHHHHHHHhC----C--CcHHHHHHHHHHHHhcCCCCc
Q 016762 305 IL--V-QMLARIPTVGITALQNRYKID-------MDGTCGKTFVQKLALHLF----N--GDTHQAAFRILTDFRKGKFGW 368 (383)
Q Consensus 305 ~l--l-~~l~~~~~~~~~~l~~~y~i~-------~~~~~~~~fl~~~a~~~~----~--gD~~~Aa~~iL~d~~~Gklg~ 368 (383)
+. + .+.+++ ....|+..|+.. ....+..+++..+|+..+ + .|..||||.||+||.+|||.|
T Consensus 395 ~~~~~~llaerI---P~~~Le~~Y~~k~~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL~~ 471 (562)
T KOG1424|consen 395 HYGAVGLLAERI---PRHVLERLYGHKPREDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKLLY 471 (562)
T ss_pred ccchHHHHHHhc---CHHHHHHHhCCCcccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCeeee
Confidence 42 2 234454 456788888521 122467889999987532 2 299999999999999999998
Q ss_pred eeccCCCCC
Q 016762 369 ISLERPPRL 377 (383)
Q Consensus 369 ~~l~~pp~~ 377 (383)
+. .||++
T Consensus 472 ~~--~PPg~ 478 (562)
T KOG1424|consen 472 CF--PPPGY 478 (562)
T ss_pred ee--CCCCC
Confidence 86 68874
No 8
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=7.7e-40 Score=311.50 Aligned_cols=254 Identities=29% Similarity=0.481 Sum_probs=205.5
Q ss_pred hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEE
Q 016762 105 GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180 (383)
Q Consensus 105 gh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi 180 (383)
|+..+++.++.++||.+|+|+.|+|||+|.++++..++.++. .|.+|+|+||+||++...+..|...|++....+.
T Consensus 198 GQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiA 277 (572)
T KOG2423|consen 198 GQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIA 277 (572)
T ss_pred cchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCccee
Confidence 458899999999999999999999999999999999999986 5779999999999999999999999988777666
Q ss_pred EeeCc-CCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE
Q 016762 181 FSNGQ-LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (383)
Q Consensus 181 ~iSa~-~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (383)
|-++. +..|-..|.++++++.+-.. ....+.|++||||||||||+||+|..+++|.|++.||-|+-+|++.
T Consensus 278 fHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt 349 (572)
T KOG2423|consen 278 FHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT 349 (572)
T ss_pred eehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH
Confidence 65443 34455667777776654321 1235779999999999999999999999999999999999999998
Q ss_pred eCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHH
Q 016762 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (383)
Q Consensus 260 ~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~ 339 (383)
+-+.|+||||||++.+.- |.+.- +.+-|.+ ++-...+.-+|+-.+|.|. .++.|...|+|+ ...+..+|++
T Consensus 350 LmkrIfLIDcPGvVyps~-dset~--ivLkGvV--RVenv~~pe~yi~~vl~R~---k~ehl~rtYkI~-~w~d~~dfle 420 (572)
T KOG2423|consen 350 LMKRIFLIDCPGVVYPSS-DSETD--IVLKGVV--RVENVKNPEDYIDGVLERC---KPEHLSRTYKIS-GWNDSTDFLE 420 (572)
T ss_pred HHhceeEecCCCccCCCC-CchHH--HHhhcee--eeeecCCHHHHHHHHHHhh---hHHHHHhhhCCC-ccccHHHHHH
Confidence 999999999999998754 32222 1222333 2334445566666677775 468899999997 3567889999
Q ss_pred HHHHH----hCCC--cHHHHHHHHHHHHhcCCCCceeccCCCCC
Q 016762 340 KLALH----LFNG--DTHQAAFRILTDFRKGKFGWISLERPPRL 377 (383)
Q Consensus 340 ~~a~~----~~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~~ 377 (383)
++|.+ ++|| |+...|++||+||..|||+||. .||.+
T Consensus 421 ~La~k~GkLlKGGEPd~~~vsKmvLnDwqRGkiP~FV--pPp~~ 462 (572)
T KOG2423|consen 421 KLAIKQGKLLKGGEPDLVVVSKMVLNDWQRGKIPFFV--PPPGL 462 (572)
T ss_pred HHHHHhCccccCCCCchhHHHHHHhhHhhcCCCceec--CCCcc
Confidence 99975 4666 9999999999999999999997 46644
No 9
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=100.00 E-value=1.1e-36 Score=299.18 Aligned_cols=219 Identities=22% Similarity=0.272 Sum_probs=164.3
Q ss_pred ccccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-H
Q 016762 43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D 116 (383)
Q Consensus 43 ~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~ 116 (383)
.+|.|+..||+|||++| +++|++.+|||+||+|+||+|+ +++..++|+||||++|+|+| ++|+++.+. +
T Consensus 17 ~~~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q-----~~nl~~~~~~~ 91 (351)
T TIGR03156 17 ESLEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELSPSQ-----ERNLEKALGCR 91 (351)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCCHHH-----HHHHHHHhCCc
Confidence 47999999999999999 8999999999999999999966 67789999999999999999 999999998 9
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHH--HHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh--
Q 016762 117 QLKLMDVVIEVRDARIPLSTTHPLMD--QWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK-- 192 (383)
Q Consensus 117 ~idr~DlILeV~DaR~p~~~~~~~l~--~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~-- 192 (383)
++||+.+||+||..|+.......+++ ++.+..|+++ ..|.+ +.+++..+ +..|.|..+
T Consensus 92 v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~-------------~~~~~-l~~~~~~i----~~~g~gE~~~~ 153 (351)
T TIGR03156 92 VIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLV-------------GGWTH-LSRQGGGI----GTRGPGETQLE 153 (351)
T ss_pred ccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhh-------------hhHHH-HHhhcCCC----CCCCCChhHHH
Confidence 99999999999998887666655544 4444555542 45655 55555433 224455432
Q ss_pred -----h-------hHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe
Q 016762 193 -----L-------SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260 (383)
Q Consensus 193 -----L-------~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~ 260 (383)
+ ++.++++.......+..| .....++|++|||||||||||+|+|+++. +.+++.||+|+|+....+
T Consensus 154 ~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r-~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i 231 (351)
T TIGR03156 154 TDRRLIRERIAQLKKELEKVEKQRERQRRRR-KRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRL 231 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEE
Confidence 2 222233322222222222 11345789999999999999999999876 678999999999765433
Q ss_pred ----CCcEEEEecCccccCCCCcHHHHHHH
Q 016762 261 ----GKDLEFLDSPGIIPMRISDQAAAIKL 286 (383)
Q Consensus 261 ----~~~i~l~DTpG~i~~~~~~~~~~~~l 286 (383)
+..+.++|||||+...+++..++|+-
T Consensus 232 ~~~~~~~i~l~DT~G~~~~l~~~lie~f~~ 261 (351)
T TIGR03156 232 DLPDGGEVLLTDTVGFIRDLPHELVAAFRA 261 (351)
T ss_pred EeCCCceEEEEecCcccccCCHHHHHHHHH
Confidence 35789999999987666666666653
No 10
>PRK11058 GTPase HflX; Provisional
Probab=100.00 E-value=8.1e-36 Score=299.37 Aligned_cols=218 Identities=19% Similarity=0.219 Sum_probs=165.3
Q ss_pred cccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HH
Q 016762 44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQ 117 (383)
Q Consensus 44 ~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~ 117 (383)
+|.|+..||+|||++| .++|+|.+|||+||||+||+|+ +++..++|+||||++|+|+| .+|+++.+. ++
T Consensus 26 ~~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~lsp~q-----~~nle~~~~~~v 100 (426)
T PRK11058 26 DLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQ-----ERNLERLCECRV 100 (426)
T ss_pred hHHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCCCCHHH-----HHHHHHHHCCeE
Confidence 7999999999999999 8999999999999999999966 77789999999999999999 999999998 89
Q ss_pred hhhcCeEEEEEecCCCCCCCcH--HHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhh-
Q 016762 118 LKLMDVVIEVRDARIPLSTTHP--LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS- 194 (383)
Q Consensus 118 idr~DlILeV~DaR~p~~~~~~--~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~- 194 (383)
+||+.+||+||..|+....... +++++.+..|++. ..| .++.++|+++ +.+|.|..++.
T Consensus 101 ~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~-------------~~~-~~l~~~~gg~----g~~g~ge~~~e~ 162 (426)
T PRK11058 101 IDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLV-------------RGW-THLERQKGGI----GLRGPGETQLET 162 (426)
T ss_pred ecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhh-------------ccc-cchhhhcCCC----CCCCCChhHhHH
Confidence 9999999999988876665554 4556666777763 345 3455666544 45688887652
Q ss_pred ------HHH-------HHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-
Q 016762 195 ------RLA-------KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF- 260 (383)
Q Consensus 195 ------~~l-------~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~- 260 (383)
+.+ +++.......+..|. ....++|++|||||||||||||+|++.+. .+++.||+|++.....+
T Consensus 163 d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~-~~~~p~ValVG~~NaGKSSLlN~Lt~~~~-~v~~~~~tTld~~~~~i~ 240 (426)
T PRK11058 163 DRRLLRNRIVQILSRLERVEKQREQGRRARI-KADVPTVSLVGYTNAGKSTLFNRITEARV-YAADQLFATLDPTLRRID 240 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-hcCCCEEEEECCCCCCHHHHHHHHhCCce-eeccCCCCCcCCceEEEE
Confidence 112 222211111111111 11235799999999999999999998764 58999999999765443
Q ss_pred -C--CcEEEEecCccccCCCCcHHHHHHH
Q 016762 261 -G--KDLEFLDSPGIIPMRISDQAAAIKL 286 (383)
Q Consensus 261 -~--~~i~l~DTpG~i~~~~~~~~~~~~l 286 (383)
+ ..+.++|||||+...+++...+|+.
T Consensus 241 l~~~~~~~l~DTaG~~r~lp~~lve~f~~ 269 (426)
T PRK11058 241 VADVGETVLADTVGFIRHLPHDLVAAFKA 269 (426)
T ss_pred eCCCCeEEEEecCcccccCCHHHHHHHHH
Confidence 2 3788999999987656666666643
No 11
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=100.00 E-value=7.8e-32 Score=239.42 Aligned_cols=171 Identities=47% Similarity=0.907 Sum_probs=144.1
Q ss_pred CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEE
Q 016762 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 181 (383)
Q Consensus 102 w~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~ 181 (383)
||||||.++.+++.+.++++|+|++|+|++.|....+..+...+.++|.++|+||+||.+.+....|.++++..+..+++
T Consensus 1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF 80 (171)
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999998887777777777789999999999998776666788887776778899
Q ss_pred eeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC
Q 016762 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG 261 (383)
Q Consensus 182 iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~ 261 (383)
+|++.+.|+.+|.+.+.+........ +.....+..++++++|.||||||||+|+|++...+.+++.||+|++.+.+.++
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~ 159 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDIEKL-KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS 159 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHHhhh-hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec
Confidence 99999999999988777654322111 11122334578999999999999999999988777899999999999998888
Q ss_pred CcEEEEecCccc
Q 016762 262 KDLEFLDSPGII 273 (383)
Q Consensus 262 ~~i~l~DTpG~i 273 (383)
..+.++||||++
T Consensus 160 ~~~~~iDtpG~~ 171 (171)
T cd01856 160 PGIYLLDTPGIL 171 (171)
T ss_pred CCEEEEECCCCC
Confidence 889999999984
No 12
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.96 E-value=1.2e-28 Score=215.74 Aligned_cols=151 Identities=31% Similarity=0.542 Sum_probs=127.6
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEeeCcCCC
Q 016762 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM 188 (383)
Q Consensus 114 l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g-~~vi~iSa~~g~ 188 (383)
+++.++.+|+|++|+|++.|....+..+.+.+. ++|+++|+||+||.++++...|..++.+.. ..++++|++.+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 567899999999999999998888888877764 389999999999998888888988886543 235678999999
Q ss_pred chhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEe
Q 016762 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD 268 (383)
Q Consensus 189 Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~D 268 (383)
|..+|.+.+.++.... + .....+|+++|.||||||||||+|.+.+.+.+++.||+|++.+++.++.+++|+|
T Consensus 82 ~~~~L~~~l~~~~~~~---~-----~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liD 153 (157)
T cd01858 82 GKGSLIQLLRQFSKLH---S-----DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLID 153 (157)
T ss_pred cHHHHHHHHHHHHhhh---c-----cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEE
Confidence 9999888877654321 0 1134679999999999999999999999899999999999999999888899999
Q ss_pred cCcc
Q 016762 269 SPGI 272 (383)
Q Consensus 269 TpG~ 272 (383)
|||+
T Consensus 154 tPGi 157 (157)
T cd01858 154 CPGV 157 (157)
T ss_pred CcCC
Confidence 9996
No 13
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.95 E-value=2.6e-27 Score=210.40 Aligned_cols=150 Identities=36% Similarity=0.606 Sum_probs=113.2
Q ss_pred CeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCC--chh----
Q 016762 122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM--GTM---- 191 (383)
Q Consensus 122 DlILeV~DaR~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~--Gi~---- 191 (383)
|+|++|+|+|.|.++.++++.+.+ .++|+|+|+||+||++++.+..|.+++++....+.|.|+.... ++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 899999999999999999988873 4789999999999999999999999998876555555543321 110
Q ss_pred -------hhhHH-----HHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE
Q 016762 192 -------KLSRL-----AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (383)
Q Consensus 192 -------~L~~~-----l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (383)
.+... .+++........ .++.....++++++|+||||||||||+|++++.+.+++.||+|++.+++.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~ 159 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYS-RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH 159 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHh-hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE
Confidence 01000 001110011111 11122346789999999999999999999998889999999999999999
Q ss_pred eCCcEEEEecCcc
Q 016762 260 FGKDLEFLDSPGI 272 (383)
Q Consensus 260 ~~~~i~l~DTpG~ 272 (383)
++.++.|+||||+
T Consensus 160 ~~~~~~l~DtPGi 172 (172)
T cd04178 160 LDKKVKLLDSPGI 172 (172)
T ss_pred eCCCEEEEECcCC
Confidence 9889999999997
No 14
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=3.1e-27 Score=203.31 Aligned_cols=136 Identities=34% Similarity=0.617 Sum_probs=122.2
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcC
Q 016762 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL 186 (383)
Q Consensus 111 ~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~ 186 (383)
++++.+.++++|+|++|+|++.|.+..+.++.+++. ++|+++|+||+||.+++....|.+++++.+..++++|+..
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 467788999999999999999999988888887763 7899999999999988888889888888888899999987
Q ss_pred CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEE
Q 016762 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEF 266 (383)
Q Consensus 187 g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l 266 (383)
+.+ +++++|.||||||||+|+|.+++.+.++..+|+|++.+++.++.++.+
T Consensus 82 ~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 132 (141)
T cd01857 82 ENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITL 132 (141)
T ss_pred CCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEE
Confidence 643 489999999999999999999888889999999999999999889999
Q ss_pred EecCccccC
Q 016762 267 LDSPGIIPM 275 (383)
Q Consensus 267 ~DTpG~i~~ 275 (383)
+|||||++|
T Consensus 133 ~DtpG~~~p 141 (141)
T cd01857 133 CDCPGLVFP 141 (141)
T ss_pred EECCCcCCC
Confidence 999999875
No 15
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.95 E-value=1.2e-26 Score=202.85 Aligned_cols=151 Identities=32% Similarity=0.512 Sum_probs=121.2
Q ss_pred CeEEEEEecCCCCCCCcHHHH-HHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHc-CCeEEEeeCcCCCchhhhhHHH
Q 016762 122 DVVIEVRDARIPLSTTHPLMD-QWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 122 DlILeV~DaR~p~~~~~~~l~-~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
|++|+|+|++.|.+..+..+. ..+ .++|.++|+||+||+++++...|..++.+. +..++++|+++|.|+..|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 799999999999998888777 333 478999999999999888777887666544 4568899999999999987766
Q ss_pred HHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcc
Q 016762 198 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (383)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~ 272 (383)
.+...........+.......+++++|+||||||||+|+|++...+.+++.||+|++.+++.++..+.|+|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 443211111111112223567899999999999999999999887889999999999999998889999999997
No 16
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.92 E-value=1.2e-24 Score=196.34 Aligned_cols=150 Identities=31% Similarity=0.387 Sum_probs=117.5
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH----HHHHHHHH--HHcC---CeEE
Q 016762 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWATYF--AKQG---TKVI 180 (383)
Q Consensus 110 ~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~----~~~w~~~l--~~~g---~~vi 180 (383)
+...+.++++++|+|++|+|++++.......+.....++|+++|+||+|+.+.+. ...|...+ ...+ ..++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence 4666778899999999999999887777766644445789999999999985432 33454111 2223 2588
Q ss_pred EeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC--------ccccCCCCCce
Q 016762 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVT 252 (383)
Q Consensus 181 ~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~--------~~~v~~~pgtT 252 (383)
++|+++|.|+++|.+.+.+... ...++++||.||||||||||+|.+.. .+.++..||||
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l~-------------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT 170 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLAK-------------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT 170 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHhh-------------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee
Confidence 9999999999998777665542 12369999999999999999999753 24678999999
Q ss_pred eEEEEEEeCCcEEEEecCcc
Q 016762 253 RVLKWVRFGKDLEFLDSPGI 272 (383)
Q Consensus 253 ~~~~~~~~~~~i~l~DTpG~ 272 (383)
++.+.+.++.++.++|||||
T Consensus 171 ~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 171 LDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred eeeEEEecCCCCEEEeCcCC
Confidence 99999999878999999997
No 17
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.92 E-value=4.1e-24 Score=186.63 Aligned_cols=149 Identities=34% Similarity=0.551 Sum_probs=121.7
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchh
Q 016762 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (383)
Q Consensus 114 l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~ 191 (383)
++.+++++|++++|+|++.|....+.++..++ .++|+++|+||+|+.+......|..+....+..++++|+++|.|++
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~ 85 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTK 85 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHH
Confidence 33556779999999999998877777776544 3789999999999987766666654444456678999999999999
Q ss_pred hhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCc
Q 016762 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271 (383)
Q Consensus 192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG 271 (383)
+|.+.+.++... .....+++++|+||||||||+|+|.+.....+++.+|+|++.+.+..+..+.++||||
T Consensus 86 ~L~~~l~~~~~~----------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 86 ILRRTIKELAKI----------DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred HHHHHHHHHHhh----------cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 998887766532 1134578999999999999999999877778899999999999888888899999999
Q ss_pred c
Q 016762 272 I 272 (383)
Q Consensus 272 ~ 272 (383)
+
T Consensus 156 i 156 (156)
T cd01859 156 V 156 (156)
T ss_pred C
Confidence 7
No 18
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=2.4e-24 Score=211.77 Aligned_cols=164 Identities=24% Similarity=0.276 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEee
Q 016762 107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSN 183 (383)
Q Consensus 107 ~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g-~~vi~iS 183 (383)
++...++....++++|+||+|+|++.+.+..+.+++++++ ++|+++|+||+|-...+.. ...|.++| ++++.+|
T Consensus 70 ~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~---~~efyslG~g~~~~IS 146 (444)
T COG1160 70 QELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL---AYEFYSLGFGEPVPIS 146 (444)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhh---HHHHHhcCCCCceEee
Confidence 4566777778899999999999999999999999999886 5899999999997633321 12344566 6789999
Q ss_pred CcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE---EEe
Q 016762 184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRF 260 (383)
Q Consensus 184 a~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~---~~~ 260 (383)
+.+|.|+.+|.+.+.+... ........+ ...+++|+|||.||||||||+|+|+|+.++.+++.||||||.-. .+-
T Consensus 147 A~Hg~Gi~dLld~v~~~l~-~~e~~~~~~-~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~ 224 (444)
T COG1160 147 AEHGRGIGDLLDAVLELLP-PDEEEEEEE-ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD 224 (444)
T ss_pred hhhccCHHHHHHHHHhhcC-Ccccccccc-cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC
Confidence 9999999999877666542 111111111 12578999999999999999999999999999999999999643 333
Q ss_pred CCcEEEEecCccccC
Q 016762 261 GKDLEFLDSPGIIPM 275 (383)
Q Consensus 261 ~~~i~l~DTpG~i~~ 275 (383)
+.++.++||.|+.+.
T Consensus 225 ~~~~~liDTAGiRrk 239 (444)
T COG1160 225 GRKYVLIDTAGIRRK 239 (444)
T ss_pred CeEEEEEECCCCCcc
Confidence 678999999999864
No 19
>PRK13796 GTPase YqeH; Provisional
Probab=99.90 E-value=5e-23 Score=203.65 Aligned_cols=152 Identities=26% Similarity=0.313 Sum_probs=119.7
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCH----HHHHHHHHHHH-HcCC---eEEE
Q 016762 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYFA-KQGT---KVIF 181 (383)
Q Consensus 110 ~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~----~~~~~w~~~l~-~~g~---~vi~ 181 (383)
+.+.+.+.-+..++|++|+|+.+..++...++.++..++++++|+||+||.++ +....|...+. ..|. .+++
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 33333333344459999999999888888889888888999999999999863 34566766543 3454 5789
Q ss_pred eeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcC-----CccccCCCCCceeEEE
Q 016762 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLK 256 (383)
Q Consensus 182 iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pgtT~~~~ 256 (383)
+|+++|.|+++|.+.+.+... ..++++||+||||||||||+|.+. +.+.++..||||++.+
T Consensus 139 vSAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~ 204 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI 204 (365)
T ss_pred EECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE
Confidence 999999999988777655421 125899999999999999999854 2456899999999999
Q ss_pred EEEeCCcEEEEecCccccC
Q 016762 257 WVRFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 257 ~~~~~~~i~l~DTpG~i~~ 275 (383)
++.++.+..|+|||||+.+
T Consensus 205 ~~~l~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 205 EIPLDDGSFLYDTPGIIHR 223 (365)
T ss_pred EEEcCCCcEEEECCCcccc
Confidence 9999888899999999853
No 20
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.90 E-value=7.3e-25 Score=205.26 Aligned_cols=247 Identities=14% Similarity=0.139 Sum_probs=161.4
Q ss_pred cccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HH
Q 016762 44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQ 117 (383)
Q Consensus 44 ~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~ 117 (383)
+|.|.-.|+.|++.-+ +++++.-.++|++|||+|++|+ .+.+.+ ...+|++..++.+ ..|.+..+... ++
T Consensus 7 qleea~aLvdtl~~~nvv~t~~kpv~~~rk~~~gsGn~e~Li~~i~aa~-at~~f~nv~a~~a---~~~~ek~r~~~Vrv 82 (410)
T KOG0410|consen 7 QLEEANALVDTLQQRNVVRTWAKPVLDNRKTYIGSGNVEELIIEIFAAH-ATTKFANVQAELA---ALMYEKSRLVRVRV 82 (410)
T ss_pred HHHHHHHHHHhhccchhhhheeeeccCCcceeeecCcHHHHHHHHhcCc-cceeeecccccch---hHHHHHhhhcceee
Confidence 5788889999998777 9999999999999999999977 333344 4678888887765 11333333333 66
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhh----
Q 016762 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL---- 193 (383)
Q Consensus 118 idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L---- 193 (383)
.||..+|+.+|.+++.......+++. ...|.+ .......|...+++.|..+ .|.|...+
T Consensus 83 fDr~~~vl~if~q~a~T~earlqval--Aempy~---------~~rl~r~~~hl~r~~g~~v------~gsges~id~d~ 145 (410)
T KOG0410|consen 83 FDRRHTVLQIFEQEAVTAEARLQVAL--AEMPYV---------GGRLERELQHLRRQSGGQV------KGSGESIIDRDI 145 (410)
T ss_pred ecchhhHHHHHHHHhhhHHHHHhhhh--hcCccc---------cchHHHHHHHHHhcCCCcc------cCccchHhHHHH
Confidence 89999999999877655554444332 223322 2233466766666555542 23443322
Q ss_pred -----------hHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e
Q 016762 194 -----------SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F 260 (383)
Q Consensus 194 -----------~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~ 260 (383)
++.++.+.+++ ..|..+.. .....|++|||||+|||||||+|++ ..+...++.|.|+|++... +
T Consensus 146 ~rllr~kea~lrKeL~~vrrkr-~~r~gr~~-~s~pviavVGYTNaGKsTLikaLT~-Aal~p~drLFATLDpT~h~a~L 222 (410)
T KOG0410|consen 146 RRLLRIKEAQLRKELQRVRRKR-QRRVGREG-ESSPVIAVVGYTNAGKSTLIKALTK-AALYPNDRLFATLDPTLHSAHL 222 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhcccc-CCCceEEEEeecCccHHHHHHHHHh-hhcCccchhheeccchhhhccC
Confidence 22222222222 11122222 2345699999999999999999994 4578889999999987533 2
Q ss_pred --CCcEEEEecCccccCCCCcHHHHHHHHHhccc--------ccCc-cChHHHHHHHHHHHhcCC
Q 016762 261 --GKDLEFLDSPGIIPMRISDQAAAIKLAICDDI--------GERS-YDVADVAAILVQMLARIP 314 (383)
Q Consensus 261 --~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i--------~~~~-~~~~~~~~~ll~~l~~~~ 314 (383)
+..++++||+|||...|..+..||...+..-. -+.+ -+.++...-+++.|+.+.
T Consensus 223 psg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~ig 287 (410)
T KOG0410|consen 223 PSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIG 287 (410)
T ss_pred CCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcC
Confidence 66799999999999999999999985543210 0111 123445556778887775
No 21
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.90 E-value=6.4e-23 Score=202.64 Aligned_cols=155 Identities=26% Similarity=0.331 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH----HHHHHHH-HHHHcCC---e
Q 016762 107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---K 178 (383)
Q Consensus 107 ~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~----~~~~w~~-~l~~~g~---~ 178 (383)
...+.+.+..+.+.+++|++|+|+.+...+...++.+...++|+++|+||+||.++. ....|.. ++++.|. .
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~ 129 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVD 129 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCc
Confidence 356667677778899999999999999888888999888889999999999998643 4566654 3445564 4
Q ss_pred EEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC-----ccccCCCCCcee
Q 016762 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTR 253 (383)
Q Consensus 179 vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~-----~~~v~~~pgtT~ 253 (383)
++++|+++|.|+++|.+.+.++.. ..+|++||.||||||||||+|+++. .+.+++.||||+
T Consensus 130 i~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~ 195 (360)
T TIGR03597 130 IILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTL 195 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEe
Confidence 888999999999988777655421 1369999999999999999999753 357899999999
Q ss_pred EEEEEEeCCcEEEEecCccccC
Q 016762 254 VLKWVRFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 254 ~~~~~~~~~~i~l~DTpG~i~~ 275 (383)
+.+.+.++.++.++|||||...
T Consensus 196 ~~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 196 DLIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred eEEEEEeCCCCEEEECCCCCCh
Confidence 9999888888999999999854
No 22
>PRK12289 GTPase RsgA; Reviewed
Probab=99.89 E-value=1.3e-22 Score=198.91 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=118.7
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCch
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi 190 (383)
..+.++|.|+.|+|+..|.... ..+.+++ .+.|.++|+||+||++..+...|.+.+...|+.++++|+.++.|+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~-~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI 163 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDP-WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL 163 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence 3488999999999998765322 2344443 378999999999999887778898888888999999999999998
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEeCCc
Q 016762 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKD 263 (383)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~~~ 263 (383)
.+|.+.+.. ..++|+|.||||||||||+|.+.....+++.+| ||++.+++.+..+
T Consensus 164 ~eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g 225 (352)
T PRK12289 164 EALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG 225 (352)
T ss_pred HHHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC
Confidence 877655421 137999999999999999999988888999998 9999999998666
Q ss_pred EEEEecCccccCCC
Q 016762 264 LEFLDSPGIIPMRI 277 (383)
Q Consensus 264 i~l~DTpG~i~~~~ 277 (383)
.+|+|||||..+.+
T Consensus 226 ~~liDTPG~~~~~l 239 (352)
T PRK12289 226 GLLADTPGFNQPDL 239 (352)
T ss_pred cEEEeCCCcccccc
Confidence 79999999987655
No 23
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.87 E-value=1e-21 Score=184.22 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=114.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHH-HHHHHHHHHcCCeEEEeeCcCCCc
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMG 189 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~-~~w~~~l~~~g~~vi~iSa~~g~G 189 (383)
..+.++|.++.|+|+++|..+.+. +.+++ .+.|.++|+||+||.+.... ..|.+.+.+.|..++++|+++|.|
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g 110 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG 110 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence 368999999999999988755443 44443 37899999999999865443 467778877888899999999999
Q ss_pred hhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCC-------CceeEEEEEEeCC
Q 016762 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGK 262 (383)
Q Consensus 190 i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~~~ 262 (383)
+++|.+.+.. ..++++|.||||||||||+|.+.....+++.+ +||++.+++.+ .
T Consensus 111 i~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~ 171 (245)
T TIGR00157 111 LKELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-H 171 (245)
T ss_pred HHHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-C
Confidence 8887654321 14799999999999999999988766666554 39999999988 4
Q ss_pred cEEEEecCccccCCCCc
Q 016762 263 DLEFLDSPGIIPMRISD 279 (383)
Q Consensus 263 ~i~l~DTpG~i~~~~~~ 279 (383)
+.+|+|||||....+.+
T Consensus 172 ~~~liDtPG~~~~~l~~ 188 (245)
T TIGR00157 172 GGLIADTPGFNEFGLWH 188 (245)
T ss_pred CcEEEeCCCccccCCCC
Confidence 66999999998765543
No 24
>PRK12288 GTPase RsgA; Reviewed
Probab=99.82 E-value=1.2e-19 Score=177.84 Aligned_cols=140 Identities=24% Similarity=0.334 Sum_probs=110.3
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHH---HHHHHHHHHHHcCCeEEEeeCcCCCc
Q 016762 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMA---DRNAWATYFAKQGTKVIFSNGQLGMG 189 (383)
Q Consensus 118 idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~---~~~~w~~~l~~~g~~vi~iSa~~g~G 189 (383)
..++|.++.|++.. |..+.. .+++++ .+.|.++|+||+||++.. ....|.+.+...|..++++|++++.|
T Consensus 118 aANvD~vlIV~s~~-p~~s~~-~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVL-PELSLN-IIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCC-CCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 57799999888864 333322 334443 268999999999998754 35667777777888999999999999
Q ss_pred hhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEeCC
Q 016762 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGK 262 (383)
Q Consensus 190 i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~~ 262 (383)
+.+|.+.+.. . .++|+|.||||||||||+|.++....++..++ ||++.+++.+..
T Consensus 196 ideL~~~L~~---k---------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~ 257 (347)
T PRK12288 196 LEELEAALTG---R---------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH 257 (347)
T ss_pred HHHHHHHHhh---C---------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC
Confidence 9888766532 0 27899999999999999999988888888775 899999999977
Q ss_pred cEEEEecCccccCCC
Q 016762 263 DLEFLDSPGIIPMRI 277 (383)
Q Consensus 263 ~i~l~DTpG~i~~~~ 277 (383)
+..|+|||||....+
T Consensus 258 ~~~liDTPGir~~~l 272 (347)
T PRK12288 258 GGDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCcccC
Confidence 778999999986544
No 25
>PRK00098 GTPase RsgA; Reviewed
Probab=99.82 E-value=1.2e-19 Score=175.03 Aligned_cols=140 Identities=23% Similarity=0.298 Sum_probs=111.3
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCC-CHHHHHHHHHHHHHcCCeEEEeeCcCCCch
Q 016762 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (383)
Q Consensus 117 ~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~-~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi 190 (383)
.+.++|+++.|+|+..|..... .+++++ .+.|.++|+||+||. +......|...+.+.|..++++|++++.|+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 4799999999999987755433 233332 368999999999997 444556677777777888999999999998
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEeCCc
Q 016762 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKD 263 (383)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~~~ 263 (383)
.+|.+.++ ...++++|.+|||||||+|+|.+.....++..++ ||++.+++.+...
T Consensus 156 ~~L~~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~ 217 (298)
T PRK00098 156 DELKPLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG 217 (298)
T ss_pred HHHHhhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC
Confidence 87765431 1258999999999999999999887777776664 8999999888777
Q ss_pred EEEEecCccccC
Q 016762 264 LEFLDSPGIIPM 275 (383)
Q Consensus 264 i~l~DTpG~i~~ 275 (383)
.+++|||||...
T Consensus 218 ~~~~DtpG~~~~ 229 (298)
T PRK00098 218 GLLIDTPGFSSF 229 (298)
T ss_pred cEEEECCCcCcc
Confidence 899999999853
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=5.8e-19 Score=180.64 Aligned_cols=181 Identities=22% Similarity=0.191 Sum_probs=123.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (383)
+..+.+||....... ..+-...+..+....+..+|+||+|+|++.+.+..+..+..++. ++|+++|+||+|+.....
T Consensus 85 ~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~ 163 (472)
T PRK03003 85 GRRFTVVDTGGWEPD-AKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA 163 (472)
T ss_pred CcEEEEEeCCCcCCc-chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch
Confidence 345677876432110 01112344555567789999999999999887766666666554 689999999999964321
Q ss_pred HHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc
Q 016762 165 RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (383)
Q Consensus 165 ~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~ 243 (383)
...+ +...| ...+++|+++|.|+.+|.+.+.+....... ........++|+++|.||||||||+|+|++....
T Consensus 164 --~~~~-~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~ 237 (472)
T PRK03003 164 --DAAA-LWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERS 237 (472)
T ss_pred --hhHH-HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 1112 22334 346789999999999986655443222111 1111234689999999999999999999998777
Q ss_pred ccCCCCCceeEEEE--EEe-CCcEEEEecCcccc
Q 016762 244 PAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (383)
Q Consensus 244 ~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~ 274 (383)
.+++.||+|++... +.. +..+.|+||||+..
T Consensus 238 ~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 238 VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred cccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 78999999998642 223 45689999999864
No 27
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=8.8e-19 Score=177.61 Aligned_cols=182 Identities=23% Similarity=0.222 Sum_probs=128.2
Q ss_pred CCCcEEEEcCCCCCcCCCch-HHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCH
Q 016762 86 LDADLYYWTKSLRPVQWYPG-HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pg-h~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~ 162 (383)
.+.++.+||...... ... -.....++....+..+|+||+|+|++.+.+..+.++..++. ++|+++|+||+|+...
T Consensus 47 ~~~~~~liDT~G~~~--~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~ 124 (435)
T PRK00093 47 LGREFILIDTGGIEP--DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE 124 (435)
T ss_pred CCcEEEEEECCCCCC--cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc
Confidence 346788888643321 111 12234445556789999999999999887777766766654 7899999999997653
Q ss_pred HHHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC
Q 016762 163 ADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 163 ~~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
+. .. ..+.+.|. .++++|+++|.|+.++.+.+.+....... .......++|+++|.||||||||+|+|++..
T Consensus 125 ~~--~~-~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~----~~~~~~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 125 EA--DA-YEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE----EDEEDEPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred hh--hH-HHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc----ccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 21 11 22234554 47899999999998886665442211110 0002246899999999999999999999988
Q ss_pred ccccCCCCCceeEEEEEEe---CCcEEEEecCccccCC
Q 016762 242 MCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (383)
Q Consensus 242 ~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~ 276 (383)
.+.+++.+|+|++.....+ +..+.++||||+....
T Consensus 198 ~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 198 RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCc
Confidence 8889999999999753332 5579999999997543
No 28
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.81 E-value=2.4e-19 Score=172.11 Aligned_cols=142 Identities=21% Similarity=0.249 Sum_probs=110.2
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCch
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi 190 (383)
-++.++|+++.|+|++.|..+. ..+++++ .++|.++|+||+||.+..+...|..++.+.|..++++|++++.|+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 3589999999999999887221 2344433 378999999999998775555676666667889999999999998
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCC-------CCceeEEEEEEeCCc
Q 016762 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKD 263 (383)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~-------pgtT~~~~~~~~~~~ 263 (383)
++|...+.. ..++++|.+|||||||||+|++.....++.. .+||++.+.+++...
T Consensus 153 ~~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~ 214 (287)
T cd01854 153 DELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG 214 (287)
T ss_pred HHHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC
Confidence 877655431 1589999999999999999998765554433 348999999888767
Q ss_pred EEEEecCccccCC
Q 016762 264 LEFLDSPGIIPMR 276 (383)
Q Consensus 264 i~l~DTpG~i~~~ 276 (383)
.+|+|||||....
T Consensus 215 ~~liDtPG~~~~~ 227 (287)
T cd01854 215 GLLIDTPGFREFG 227 (287)
T ss_pred CEEEECCCCCccC
Confidence 7899999997543
No 29
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=99.80 E-value=6.6e-21 Score=151.06 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=77.4
Q ss_pred ccccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-H
Q 016762 43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D 116 (383)
Q Consensus 43 ~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~ 116 (383)
.+|.|+..||+|||++| +++|++++|||+||||+||+|+ .++..++|+++||++|||+| .+|+++.+. +
T Consensus 8 ~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q-----~rNLe~~~~~~ 82 (95)
T PF13167_consen 8 ESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQ-----QRNLEKALGVK 82 (95)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHH-----HHHHHHHHCCe
Confidence 48999999999999999 8999999999999999999966 77889999999999999999 999999998 8
Q ss_pred HhhhcCeEEEEEe
Q 016762 117 QLKLMDVVIEVRD 129 (383)
Q Consensus 117 ~idr~DlILeV~D 129 (383)
++||+.+||+||.
T Consensus 83 V~DRt~LIL~IFA 95 (95)
T PF13167_consen 83 VIDRTQLILEIFA 95 (95)
T ss_pred eeccccHHHHHcC
Confidence 9999999999984
No 30
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=6.4e-19 Score=178.21 Aligned_cols=181 Identities=23% Similarity=0.248 Sum_probs=130.9
Q ss_pred CCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 016762 87 DADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA 163 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~ 163 (383)
+..+.+||...- .....+ ...+.++....++.+|+|++|+|++.+....+.++.+++. ++|+++|+||+|+...+
T Consensus 46 ~~~~~liDTpG~--~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 46 GREFILIDTGGI--EEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred CeEEEEEECCCC--CCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 445778886432 111111 3455666677899999999999999888777777777764 78999999999997654
Q ss_pred HHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCc
Q 016762 164 DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (383)
Q Consensus 164 ~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~ 242 (383)
... ..+.+.|. .++++|+++|.|+.++.+.+.+....... ........++|+++|.||||||||+|+|++...
T Consensus 124 ~~~---~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~---~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~ 197 (429)
T TIGR03594 124 AVA---AEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEE---EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEER 197 (429)
T ss_pred ccH---HHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccc---cccccCCceEEEEECCCCCCHHHHHHHHHCCCe
Confidence 321 22345564 68999999999999887665544322111 111122457899999999999999999999887
Q ss_pred cccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 243 CPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 243 ~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
..+++.+|||++.....+ +..+.++||||+...
T Consensus 198 ~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~ 233 (429)
T TIGR03594 198 VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRK 233 (429)
T ss_pred eecCCCCCceECcEeEEEEECCcEEEEEECCCcccc
Confidence 889999999999653332 457999999999754
No 31
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=5.1e-18 Score=181.56 Aligned_cols=184 Identities=23% Similarity=0.202 Sum_probs=125.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (383)
+..+.+||....... ..+....+.++....++.+|+||+|+|++.+....+..+..++. ++|+++|+||+|+.....
T Consensus 322 ~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~ 400 (712)
T PRK09518 322 GTDFKLVDTGGWEAD-VEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY 400 (712)
T ss_pred CEEEEEEeCCCcCCC-CccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh
Confidence 345667775432110 11223445666667899999999999999877766666666653 799999999999865422
Q ss_pred HHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc
Q 016762 165 RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (383)
Q Consensus 165 ~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~ 243 (383)
.. ..+...| ..++++|+++|.|+.+|.+.+.+....... ...--.....++|+++|.||||||||+|+|++.+..
T Consensus 401 ~~---~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~-~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~ 476 (712)
T PRK09518 401 DA---AEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEK-TSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERA 476 (712)
T ss_pred hH---HHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccc-cccccCCCCCcEEEEECCCCCCHHHHHHHHhCcccc
Confidence 11 1222334 346789999999999986655443322110 000000123578999999999999999999998877
Q ss_pred ccCCCCCceeEEEEE--Ee-CCcEEEEecCccccC
Q 016762 244 PAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 244 ~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~ 275 (383)
.+++.||||++.... .. +..+.++||||+...
T Consensus 477 ~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~ 511 (712)
T PRK09518 477 VVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRR 511 (712)
T ss_pred ccCCCCCCCcCcceeEEEECCCEEEEEECCCcccC
Confidence 789999999996432 22 567889999998743
No 32
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=4.9e-16 Score=147.07 Aligned_cols=141 Identities=24% Similarity=0.313 Sum_probs=107.8
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHH--HHHHHHHHcCCeEEEeeCcCCCch
Q 016762 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMGT 190 (383)
Q Consensus 118 idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~--~w~~~l~~~g~~vi~iSa~~g~Gi 190 (383)
+...|-++.|+.+-.|..+.+ .|++++ .+...++++||+||++.++.. ++...++..|+.++++|++++.|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~-~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~ 155 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTN-LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL 155 (301)
T ss_pred ccccceEEEEEeccCCCCCHH-HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence 444677777887777765544 345543 367788899999999877655 566778889999999999999998
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCC---C----CceeEEEEEEeCCc
Q 016762 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR---P----GVTRVLKWVRFGKD 263 (383)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~---p----gtT~~~~~~~~~~~ 263 (383)
..|...++. -...++|.++||||||+|+|.+.....+++. . .||++...+.+..+
T Consensus 156 ~~l~~~l~~------------------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g 217 (301)
T COG1162 156 EELAELLAG------------------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG 217 (301)
T ss_pred HHHHHHhcC------------------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC
Confidence 877655321 1478999999999999999998655554432 2 49999999999878
Q ss_pred EEEEecCccccCCC
Q 016762 264 LEFLDSPGIIPMRI 277 (383)
Q Consensus 264 i~l~DTpG~i~~~~ 277 (383)
-.++|||||-...+
T Consensus 218 G~iiDTPGf~~~~l 231 (301)
T COG1162 218 GWIIDTPGFRSLGL 231 (301)
T ss_pred CEEEeCCCCCccCc
Confidence 88999999976544
No 33
>PRK01889 GTPase RsgA; Reviewed
Probab=99.63 E-value=1.7e-15 Score=149.53 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=102.9
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHH-HHHHHHHHHHHcCCeEEEeeCcCCCchh
Q 016762 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (383)
Q Consensus 118 idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~-~~~~w~~~l~~~g~~vi~iSa~~g~Gi~ 191 (383)
+.++|.++.|+++..++.. ..+++++ .+.+.++|+||+||++.. ....|...+ ..|+.++++|+++|.|+.
T Consensus 110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHH
Confidence 5889999999998633222 2444443 367889999999998753 222333333 457889999999999988
Q ss_pred hhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCC-------CCceeEEEEEEeCCcE
Q 016762 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKDL 264 (383)
Q Consensus 192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~-------pgtT~~~~~~~~~~~i 264 (383)
+|...+.. .-+++++|.+|+|||||+|+|.+.....++.. ..+|+..++..+..+.
T Consensus 187 ~L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~ 249 (356)
T PRK01889 187 VLAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGG 249 (356)
T ss_pred HHHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCC
Confidence 87666421 12589999999999999999998655544433 2367777777777677
Q ss_pred EEEecCccccCCCCcHH
Q 016762 265 EFLDSPGIIPMRISDQA 281 (383)
Q Consensus 265 ~l~DTpG~i~~~~~~~~ 281 (383)
.++|||||....+.+..
T Consensus 250 ~l~DtpG~~~~~l~~~~ 266 (356)
T PRK01889 250 LLIDTPGMRELQLWDAE 266 (356)
T ss_pred eecCCCchhhhcccCch
Confidence 89999999766554443
No 34
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.5e-14 Score=137.13 Aligned_cols=71 Identities=28% Similarity=0.477 Sum_probs=58.2
Q ss_pred CCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCCCCcHHHHHH
Q 016762 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAAAIK 285 (383)
Q Consensus 214 ~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~~~~~~~~~~ 285 (383)
.+..++|.++||||||||||+++|++.+ ..+++.||||+.++.-++ +..++++||||++....++.+.-.+
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH
Confidence 3456789999999999999999999876 799999999999887665 3478999999999876665444333
No 35
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.49 E-value=7.1e-14 Score=122.06 Aligned_cols=95 Identities=25% Similarity=0.332 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcccc
Q 016762 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (383)
Q Consensus 166 ~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v 245 (383)
+.|.+.+++.|+.++++|++.+.|+.+|++.++. .+++++|-++||||||||+|.+.....+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG------------------KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------------------SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------------------CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 4678889999999999999999999887665432 2589999999999999999998755544
Q ss_pred CC---C----CCceeEEEEEEeCCcEEEEecCccccCCCC
Q 016762 246 AP---R----PGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278 (383)
Q Consensus 246 ~~---~----pgtT~~~~~~~~~~~i~l~DTpG~i~~~~~ 278 (383)
+. . -.||++.+++.+..+..|+|||||-...+.
T Consensus 64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp S--------------SEEEEEETTSEEEECSHHHHT--GC
T ss_pred hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccc
Confidence 32 2 248889999999889999999999765443
No 36
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.48 E-value=6.7e-14 Score=121.91 Aligned_cols=61 Identities=34% Similarity=0.541 Sum_probs=46.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccCCCCc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMRISD 279 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~~~~~ 279 (383)
++|++||.||||||||||+|+|++ ..+++.||+|.+...- .. +..+.++||||+.......
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 479999999999999999999987 7899999999997643 33 5679999999997644333
No 37
>COG1159 Era GTPase [General function prediction only]
Probab=99.47 E-value=6.1e-14 Score=131.83 Aligned_cols=65 Identities=31% Similarity=0.546 Sum_probs=53.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEe--CCcEEEEecCccccCCCCcHHHHH
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRF--GKDLEFLDSPGIIPMRISDQAAAI 284 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~--~~~i~l~DTpG~i~~~~~~~~~~~ 284 (383)
-|+|||.||||||||+|+|.|.+.+.++++|.|||+. +.+.. +.++.++|||||..|+ +.....+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk-~~l~~~m 75 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK-HALGELM 75 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc-hHHHHHH
Confidence 4999999999999999999999999999999999994 33333 4579999999998773 3344444
No 38
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.8e-13 Score=135.65 Aligned_cols=60 Identities=35% Similarity=0.488 Sum_probs=53.3
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCcccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~ 274 (383)
..+++++|+|.||||||||+|+|+++.++.|++.||||||+-... + |-.+.|+||.|+..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCccc
Confidence 457899999999999999999999999999999999999985444 3 56789999999984
No 39
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.41 E-value=1.9e-13 Score=135.11 Aligned_cols=59 Identities=39% Similarity=0.583 Sum_probs=51.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE---EeCCcEEEEecCccccCC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV---RFGKDLEFLDSPGIIPMR 276 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~---~~~~~i~l~DTpG~i~~~ 276 (383)
+.|+|||.||||||||+|+|++++.+.|+++||+|||...- ..+..+.++||.|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~ 65 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD 65 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC
Confidence 46999999999999999999999999999999999997532 236789999999998644
No 40
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.39 E-value=5.4e-13 Score=110.36 Aligned_cols=58 Identities=38% Similarity=0.633 Sum_probs=49.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMR 276 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~~ 276 (383)
+|+++|.||||||||+|+|++.+...+++.+++|++.... .. +..+.++|||||....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 5899999999999999999997778899999999998542 33 4567999999998653
No 41
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.7e-12 Score=116.04 Aligned_cols=60 Identities=30% Similarity=0.527 Sum_probs=54.1
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccccCC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~ 276 (383)
.+.|+++|.+|||||||||+|++++ .+.+|.+||.|+.+..+.+++.+.++|-||+=...
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAk 84 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAK 84 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCccccc
Confidence 4569999999999999999999965 58999999999999999999889999999996543
No 42
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.2e-12 Score=124.70 Aligned_cols=59 Identities=37% Similarity=0.537 Sum_probs=52.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~ 274 (383)
.++.|+|+|.||||||||+|+|+++.+..|++.||||||.-... + |..++|+||.|+..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 46889999999999999999999999999999999999964333 3 66899999999987
No 43
>PTZ00258 GTP-binding protein; Provisional
Probab=99.21 E-value=1.7e-11 Score=121.54 Aligned_cols=59 Identities=36% Similarity=0.490 Sum_probs=48.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--------------------CCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------------~~~i~l~DTpG~i~~ 275 (383)
..++|+|||+||||||||||+|++.+ +.+++.||||+++..-.+ +..+.++||||++..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 46789999999999999999999765 799999999998654222 124899999999954
No 44
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.21 E-value=1.4e-11 Score=123.02 Aligned_cols=57 Identities=28% Similarity=0.389 Sum_probs=48.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--eC--CcEEEEecCccccCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--FG--KDLEFLDSPGIIPMR 276 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~~--~~i~l~DTpG~i~~~ 276 (383)
.|+|||+||||||||||+|++.+ ..++++||||+++.... .+ ..+.++||||++...
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 69999999999999999999876 58999999999976533 33 359999999998653
No 45
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.21 E-value=1.7e-11 Score=116.79 Aligned_cols=57 Identities=32% Similarity=0.537 Sum_probs=47.9
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE-EEEe--CCcEEEEecCccccC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRF--GKDLEFLDSPGIIPM 275 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~-~~~~--~~~i~l~DTpG~i~~ 275 (383)
+|+++|+||||||||+|+|++.+...++++|+||++.. .+.. +..+.++||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 58999999999999999999998788999999999853 2222 346899999999854
No 46
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.21 E-value=2.9e-11 Score=123.05 Aligned_cols=59 Identities=36% Similarity=0.487 Sum_probs=50.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~ 274 (383)
..++|+++|+||||||||+|+|++.+...+++.||+|++..... + +..+.++||||+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 45789999999999999999999887778999999999975433 3 45789999999863
No 47
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.17 E-value=2.2e-11 Score=115.72 Aligned_cols=55 Identities=42% Similarity=0.524 Sum_probs=45.9
Q ss_pred EeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC------------------cEEEEecCccccC
Q 016762 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK------------------DLEFLDSPGIIPM 275 (383)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~------------------~i~l~DTpG~i~~ 275 (383)
|+|||+||||||||+|+|++.+. .+++.||||+++.. +.+.. .+.++||||++..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~ 75 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKG 75 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCC
Confidence 58999999999999999998874 89999999999754 22221 3899999999964
No 48
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.17 E-value=2.7e-11 Score=118.93 Aligned_cols=57 Identities=40% Similarity=0.546 Sum_probs=48.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC------------------cEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK------------------DLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~------------------~i~l~DTpG~i~~ 275 (383)
++|+|||+||||||||+|+|++.+ +.+++.||||+++.. +.+.. .+.++||||++..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 579999999999999999999877 789999999998753 23222 4899999999964
No 49
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.15 E-value=8.5e-11 Score=111.48 Aligned_cols=59 Identities=34% Similarity=0.503 Sum_probs=50.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE---EEEeCCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~---~~~~~~~i~l~DTpG~i~~ 275 (383)
...+|++||+||||||||+|+||+.+ ..+++.||||+.+. ..+-+-.++++|+||++..
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccC
Confidence 34689999999999999999999876 68999999999963 2233678999999999964
No 50
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.12 E-value=7.1e-11 Score=111.03 Aligned_cols=63 Identities=25% Similarity=0.517 Sum_probs=53.5
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCCC
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 277 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~~ 277 (383)
.+.+.|+++|.||||||||.|.+.|.+.+.++.++.|||+...--+ ..++.++||||++.+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM 135 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence 3567899999999999999999999999999999999999654333 34689999999997643
No 51
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.12 E-value=1.4e-10 Score=104.94 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=47.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCC-CCCceeEEEEEEe---CCcEEEEecCccccCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~ 276 (383)
+|++||.||||||||+|+|+|++.+.++. .+++|++.+.... +..+.++||||+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~ 63 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence 69999999999999999999987665553 5689998765432 5679999999998654
No 52
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.11 E-value=4.7e-11 Score=118.48 Aligned_cols=72 Identities=26% Similarity=0.353 Sum_probs=57.1
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCccccCCCCcHHHHHHHH
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIPMRISDQAAAIKLA 287 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~~~~~~~~~~~~la 287 (383)
+...+..+||||||||||++|.++.. .+.+.+.+|||+.+-.-+++. .++++||||++.+..++...-.+++
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtra-dvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRA-DDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccccc-ccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 34567999999999999999999954 578999999999976555543 4689999999988877765544443
No 53
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.08 E-value=1.4e-10 Score=113.60 Aligned_cols=57 Identities=35% Similarity=0.443 Sum_probs=48.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe--CCcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~i~l~DTpG~i~~ 275 (383)
..|+|||+||||||||||+|++.+ ..+++.||||++++. +.. +..+.++||||++..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 369999999999999999999765 679999999999764 333 246999999999864
No 54
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.08 E-value=8.2e-11 Score=111.15 Aligned_cols=56 Identities=32% Similarity=0.399 Sum_probs=47.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCccccC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPM 275 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~i~~ 275 (383)
.|++||+||||||||+|+|+..+ -++++.+|||..++.-.+ ...+.+-|-||+|..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~G 257 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEG 257 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCcccccc
Confidence 58999999999999999999776 499999999999764332 234889999999975
No 55
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.07 E-value=3.1e-10 Score=115.15 Aligned_cols=60 Identities=38% Similarity=0.493 Sum_probs=50.6
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCcccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~ 274 (383)
...++|+++|.||||||||+|+|++.....+++.||||++..... + +..+.++||||+..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 356789999999999999999999887778999999999975433 3 45689999999964
No 56
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.06 E-value=3.1e-10 Score=106.78 Aligned_cols=61 Identities=26% Similarity=0.361 Sum_probs=51.8
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
..+++|+++|.||||||||+|+|++...+.+++..++|+..+.... +..+.++|||||...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 3568999999999999999999999887788888888888765443 457899999999865
No 57
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.05 E-value=1.9e-10 Score=117.30 Aligned_cols=57 Identities=35% Similarity=0.491 Sum_probs=47.8
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~ 275 (383)
..|+|||+||||||||||+|++.+ ..+++.||||+++..- .. +..+.++||||++..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 469999999999999999999865 5789999999997643 33 347899999999853
No 58
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.05 E-value=7.6e-10 Score=100.48 Aligned_cols=84 Identities=25% Similarity=0.262 Sum_probs=55.6
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CC-cEEE
Q 016762 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEF 266 (383)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~i~l 266 (383)
..+++.++.+.+.+...+..+. .+..++|+++|.+|||||||+|+|++.. +.+.+.+++|.+.....+ +. .+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i 93 (204)
T cd01878 16 AKLRRELEKVKKQRELQRRRRK-RSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLL 93 (204)
T ss_pred HHHHHHHHHHHHhHHHHHHhhh-hcCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEE
Confidence 3444444444433322222211 2345789999999999999999999865 466777888887654332 33 7899
Q ss_pred EecCccccCC
Q 016762 267 LDSPGIIPMR 276 (383)
Q Consensus 267 ~DTpG~i~~~ 276 (383)
+||||+....
T Consensus 94 ~Dt~G~~~~~ 103 (204)
T cd01878 94 TDTVGFIRDL 103 (204)
T ss_pred eCCCccccCC
Confidence 9999997543
No 59
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.03 E-value=4.6e-10 Score=99.97 Aligned_cols=60 Identities=30% Similarity=0.514 Sum_probs=51.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~ 275 (383)
+.++|+++|.+|||||||+|+|++.. ...+++.+|+|++...+..+.++.++||||+...
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~ 77 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYA 77 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccc
Confidence 34689999999999999999999875 4567889999999887776778999999998643
No 60
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.03 E-value=2.9e-10 Score=114.41 Aligned_cols=55 Identities=33% Similarity=0.484 Sum_probs=47.7
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~i~ 274 (383)
.|+|||+||||||||||+|++.+ ..+++.||||+++....+ +..+.++||||++.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 69999999999999999999765 578999999999875433 45799999999985
No 61
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.02 E-value=5.1e-10 Score=100.55 Aligned_cols=60 Identities=32% Similarity=0.527 Sum_probs=51.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~ 275 (383)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++++....+.++.++||||+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCc
Confidence 35689999999999999999999864 5678889999999888777778999999998643
No 62
>PRK15494 era GTPase Era; Provisional
Probab=98.98 E-value=1.2e-09 Score=107.47 Aligned_cols=59 Identities=31% Similarity=0.577 Sum_probs=49.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccccC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~~ 275 (383)
..+|++||.||||||||+|+|.+.+...++++++||++... +.. +.++.++||||+..+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 45899999999999999999999887778999999998543 222 457899999999754
No 63
>PRK04213 GTP-binding protein; Provisional
Probab=98.97 E-value=8.4e-10 Score=99.88 Aligned_cols=54 Identities=37% Similarity=0.588 Sum_probs=47.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~ 272 (383)
.++|+++|.+|||||||+|+|++.. ..++..||+|++...+..+ ++.++||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCcc
Confidence 4689999999999999999999865 6788899999997766655 7999999997
No 64
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.97 E-value=5.6e-10 Score=113.04 Aligned_cols=56 Identities=43% Similarity=0.631 Sum_probs=48.2
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
+|++||.||||||||+|+|+++..+.+++.||+|++.+...+ +..+.++||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~ 59 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE 59 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC
Confidence 489999999999999999999887789999999999765432 56799999999853
No 65
>PRK00089 era GTPase Era; Reviewed
Probab=98.96 E-value=8.3e-10 Score=106.17 Aligned_cols=58 Identities=36% Similarity=0.601 Sum_probs=48.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE-EEe-C-CcEEEEecCccccCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRF-G-KDLEFLDSPGIIPMR 276 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~-~~~-~-~~i~l~DTpG~i~~~ 276 (383)
.|+++|.||||||||+|+|+|.+...+++.|.||++... +.. + .++.++||||+..+.
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 599999999999999999999988889999999998532 222 2 478999999997543
No 66
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.96 E-value=7.2e-10 Score=108.43 Aligned_cols=57 Identities=35% Similarity=0.496 Sum_probs=47.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC--CcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~i~l~DTpG~i~~ 275 (383)
..|+|||+||||||||||+|++.+ ..+++.||||++++. +.++ ..+.++||||++..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 369999999999999999999765 578999999998764 3333 57899999999854
No 67
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.94 E-value=1.9e-09 Score=103.45 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=48.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE---eCCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~---~~~~i~l~DTpG~i~~ 275 (383)
...+|+++|.|||||||++|+|+|+..+.++...++|...+... -+..+.++||||+...
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 45789999999999999999999988777777777666543322 2567999999999864
No 68
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.94 E-value=1.1e-09 Score=109.66 Aligned_cols=57 Identities=30% Similarity=0.353 Sum_probs=46.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-------------------------CCcEEEEecC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-------------------------GKDLEFLDSP 270 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-------------------------~~~i~l~DTp 270 (383)
++|+|||+||||||||+|+|++.+ +.+++.||+|+++..- .+ .-.+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 479999999999999999999875 6789999999986541 11 1236799999
Q ss_pred ccccC
Q 016762 271 GIIPM 275 (383)
Q Consensus 271 G~i~~ 275 (383)
|++..
T Consensus 81 Gl~~g 85 (396)
T PRK09602 81 GLVPG 85 (396)
T ss_pred CcCCC
Confidence 99854
No 69
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.91 E-value=1.4e-09 Score=95.13 Aligned_cols=55 Identities=33% Similarity=0.471 Sum_probs=44.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CC-cEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GK-DLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~-~i~l~DTpG~i~ 274 (383)
.|++||.+|||||||+|+|++.. ..++..||+|++.... .. +. ++.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 48999999999999999999765 4788889999876432 22 33 789999999863
No 70
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.90 E-value=2.4e-09 Score=109.89 Aligned_cols=57 Identities=39% Similarity=0.530 Sum_probs=48.8
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
.++|+|||.||||||||+|+|++.....+++.||+|++...... +..+.++||||+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence 46799999999999999999998776778999999999765433 4568999999986
No 71
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.90 E-value=2.7e-09 Score=110.35 Aligned_cols=57 Identities=35% Similarity=0.574 Sum_probs=48.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
.+|+++|.||||||||+|+|+|.+ .+|+|-||+|-+...-.+ +..+.++|.||.-.-
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL 63 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSL 63 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCC
Confidence 459999999999999999999876 799999999988654333 667999999999643
No 72
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.89 E-value=2.5e-09 Score=93.44 Aligned_cols=55 Identities=40% Similarity=0.609 Sum_probs=45.1
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
+|+++|++|||||||+|+|++.. ..+++.+++|++...... +..+.++||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 68999999999999999999865 456778999988765443 24789999999863
No 73
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.88 E-value=1.2e-09 Score=104.57 Aligned_cols=56 Identities=36% Similarity=0.510 Sum_probs=48.1
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe--CCcEEEEecCccccC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIPM 275 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~--~~~i~l~DTpG~i~~ 275 (383)
.|++||+||||||||||+++..+ -++++.||||+.+. .+++ ...+.+-|-||+|.-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEG 220 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEG 220 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccc
Confidence 48999999999999999999765 68999999999964 3444 456999999999964
No 74
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.3e-09 Score=104.19 Aligned_cols=58 Identities=38% Similarity=0.497 Sum_probs=46.9
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-------------------CCcEEEEecCccccC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------GKDLEFLDSPGIIPM 275 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-------------------~~~i~l~DTpG~i~~ 275 (383)
.++++|||.||||||||+|+||... +.+++.||||-++.. +.+ ...+.++|.+|+++.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 3579999999999999999999776 889999999998632 111 123679999999964
No 75
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.84 E-value=3.2e-09 Score=107.77 Aligned_cols=57 Identities=44% Similarity=0.638 Sum_probs=49.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
++|++||.||||||||+|+|++...+.+++.||+|++.....+ +..+.++||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC
Confidence 3699999999999999999998877788999999999764333 56789999999975
No 76
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.83 E-value=5.4e-09 Score=89.61 Aligned_cols=58 Identities=36% Similarity=0.483 Sum_probs=48.2
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
++|+++|.+|+|||||+|+|++.....+++.+++|++...... +..+.++||||+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 4799999999999999999998876678899999998754332 346889999998643
No 77
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.83 E-value=3.2e-09 Score=103.25 Aligned_cols=55 Identities=29% Similarity=0.338 Sum_probs=44.5
Q ss_pred EeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-------------------------CCcEEEEecCcc
Q 016762 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSPGI 272 (383)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-------------------------~~~i~l~DTpG~ 272 (383)
|++||+||||||||+|+|++.. ..+++.||+|+++.. ..+ .-.+.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999765 689999999988643 111 124789999999
Q ss_pred ccC
Q 016762 273 IPM 275 (383)
Q Consensus 273 i~~ 275 (383)
+..
T Consensus 80 v~g 82 (318)
T cd01899 80 VPG 82 (318)
T ss_pred CCC
Confidence 854
No 78
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.83 E-value=4.8e-09 Score=97.83 Aligned_cols=56 Identities=34% Similarity=0.580 Sum_probs=46.0
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccccC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~~ 275 (383)
+|+++|+||+|||||+|+|++.. ..+++.||+|.+... +.. +..+.++||||++..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 58999999999999999999865 568899999987643 222 557889999999754
No 79
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.82 E-value=4.6e-09 Score=112.92 Aligned_cols=57 Identities=42% Similarity=0.578 Sum_probs=49.3
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
.+|+|+|+||||||||+|+|++.+...+++.||+|++...... +..+.++||||+..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 335 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence 5799999999999999999999877789999999999765433 45789999999874
No 80
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.82 E-value=4.4e-09 Score=100.37 Aligned_cols=60 Identities=35% Similarity=0.407 Sum_probs=48.8
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--------------------CCcEEEEecCcccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIP 274 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------------~~~i~l~DTpG~i~ 274 (383)
+..++++|||.|||||||++|+|++.+ +.+++.||+|.++..-++ .-.+.++|..|+++
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSK-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCC-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 345789999999999999999999765 569999999999743221 22378999999996
Q ss_pred C
Q 016762 275 M 275 (383)
Q Consensus 275 ~ 275 (383)
.
T Consensus 97 G 97 (391)
T KOG1491|consen 97 G 97 (391)
T ss_pred C
Confidence 4
No 81
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.81 E-value=4.1e-09 Score=90.50 Aligned_cols=55 Identities=45% Similarity=0.663 Sum_probs=45.2
Q ss_pred eEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 221 ~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
+++|.+|||||||+|+|.+.....++..+++|++...... +..+.++||||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence 4899999999999999998776678889999988654333 456889999999753
No 82
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.81 E-value=6.2e-09 Score=90.53 Aligned_cols=59 Identities=39% Similarity=0.558 Sum_probs=48.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~ 275 (383)
+++|+++|.+|+|||||+|+|++......++.+++|++.... .. +..+.++||||+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 468999999999999999999987666778889999886432 22 456899999999643
No 83
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.81 E-value=6.8e-09 Score=111.81 Aligned_cols=56 Identities=32% Similarity=0.515 Sum_probs=47.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
.+|+++|.||||||||+|+|+|.+ ..+++.||+|.+...... +..+.++||||+-.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ys 62 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccc
Confidence 579999999999999999999876 589999999998654333 45789999999964
No 84
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.80 E-value=3.9e-09 Score=90.91 Aligned_cols=52 Identities=42% Similarity=0.663 Sum_probs=42.9
Q ss_pred EeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCcccc
Q 016762 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (383)
Q Consensus 222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~ 274 (383)
++|++|||||||+|+|++.. ..++..||+|++.+. +.. +.++.++||||+..
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 55 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYS 55 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccc
Confidence 58999999999999999865 678889999998653 233 45789999999864
No 85
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.75 E-value=6.9e-09 Score=91.01 Aligned_cols=52 Identities=37% Similarity=0.526 Sum_probs=42.5
Q ss_pred EeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee--CCcEEEEecCcccc
Q 016762 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF--GKDLEFLDSPGIIP 274 (383)
Q Consensus 222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~--~~~i~l~DTpG~i~ 274 (383)
++|.+|||||||+|+|++... .+++.+++|++.... .. +..+.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 589999999999999998764 778899999886432 22 46789999999853
No 86
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.75 E-value=1.7e-08 Score=86.85 Aligned_cols=59 Identities=36% Similarity=0.565 Sum_probs=46.9
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
..+|+++|.||+|||||+|+|++...+..++.+.+|+....... +..+.++||||+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence 35799999999999999999999877677788888877543222 246889999998754
No 87
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.75 E-value=2.3e-08 Score=103.72 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=48.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCC-CCceeEEEEEE--eCCcEEEEecCccccCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKWVR--FGKDLEFLDSPGIIPMR 276 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~-pgtT~~~~~~~--~~~~i~l~DTpG~i~~~ 276 (383)
...+|+++|.|||||||++|+|+|++.+.++.. ++||+...... -+..+.++|||||....
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSA 180 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccc
Confidence 457899999999999999999999887777765 67776533322 25679999999999754
No 88
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.73 E-value=1.7e-08 Score=87.17 Aligned_cols=56 Identities=30% Similarity=0.549 Sum_probs=47.8
Q ss_pred EeEeecCCCChhHHHHhhhc-CCccccCCCCCceeEEEEEEeCCcEEEEecCccccC
Q 016762 220 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~-~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~ 275 (383)
|+++|.+|||||||+|+|++ ......+..+|+|.....+..+..+.++||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence 79999999999999999994 334557888999999888877779999999998643
No 89
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.69 E-value=2.9e-08 Score=85.85 Aligned_cols=54 Identities=33% Similarity=0.529 Sum_probs=40.2
Q ss_pred EEeEeecCCCChhHHHHhhhcCCc--cccCCCCCceeEEEEE--Ee--CCcEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWV--RF--GKDLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pgtT~~~~~~--~~--~~~i~l~DTpG~ 272 (383)
.|+++|.+|||||||+|+|++... ......+++|.+.... .+ +..+.++||||.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~ 61 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH 61 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh
Confidence 589999999999999999997532 2223457888776432 22 346889999996
No 90
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.68 E-value=3.6e-08 Score=90.56 Aligned_cols=62 Identities=27% Similarity=0.388 Sum_probs=41.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCC-CCCceeEEEEEEe---CCcEEEEecCccccCCCCc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISD 279 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~~~~ 279 (383)
++|.++|.|++||||++|+|+|+....++. ...+|...+.... +..+.++|||||......+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 379999999999999999999988766552 3456666554332 6689999999998765433
No 91
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.65 E-value=3.4e-08 Score=97.26 Aligned_cols=58 Identities=34% Similarity=0.367 Sum_probs=47.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC------------------CcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~------------------~~i~l~DTpG~i~~ 275 (383)
++++|||+||||||||+|+|++.+...+++.||||.++.. +.+. ..+.++|.||++..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 5799999999999999999998774389999999998643 3322 24789999999864
No 92
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.61 E-value=8.8e-08 Score=81.20 Aligned_cols=55 Identities=38% Similarity=0.562 Sum_probs=45.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC---CcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~---~~i~l~DTpG~i 273 (383)
++|+++|++|+|||||+|+|.+.. ...+..+++|++... +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999999876 777888999998654 3333 357889999953
No 93
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.61 E-value=9.2e-08 Score=88.67 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=45.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCC-ccccC-CCCCceeEEEEEEe------CCcEEEEecCccccCCC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRR-MCPAA-PRPGVTRVLKWVRF------GKDLEFLDSPGIIPMRI 277 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~-~~pgtT~~~~~~~~------~~~i~l~DTpG~i~~~~ 277 (383)
..|+|+|.+|+|||||+|.|++.. ...++ ....+|+.+..... +..++++||||+.....
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 458999999999999999999872 34444 45789998654221 35799999999986644
No 94
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.61 E-value=2.7e-08 Score=90.99 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=41.1
Q ss_pred EEeEeecCCCChhHHHHhhhcCCcccc------------------------------CCCCCceeEEEEEEe---CCcEE
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GKDLE 265 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~~i~ 265 (383)
+|+++|.+|+|||||+|+|+....+.+ +...|+|++.....+ +..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999975433322 113788998754443 55789
Q ss_pred EEecCccc
Q 016762 266 FLDSPGII 273 (383)
Q Consensus 266 l~DTpG~i 273 (383)
|+||||..
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999974
No 95
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.61 E-value=6.2e-08 Score=84.37 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=41.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe------CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~------~~~i~l~DTpG~i 273 (383)
.|+++|.+|||||||+|+|++.. ......+++|.+.....+ +..+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 58999999999999999999654 445566788887643222 3468999999973
No 96
>PRK09866 hypothetical protein; Provisional
Probab=98.55 E-value=1.5e-07 Score=97.52 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=61.6
Q ss_pred hhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEE
Q 016762 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFL 267 (383)
Q Consensus 192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~ 267 (383)
.+++.++.+.......++. .+.++++|++|+|||||+|+|.|.....+++.+++|. +.+++. ...+++.
T Consensus 50 ~i~~ri~~L~~~L~Kv~~~------~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT~i~~~pg~re~~L~~ 122 (741)
T PRK09866 50 NIAERHAMLNNELRKISRL------EMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PTLIRHTPGQKEPVLHF 122 (741)
T ss_pred HHHHHHHHHHHHHHHHhcc------ceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cEEEEecCCcCceeeec
Confidence 4455555555443333222 2679999999999999999999998888889999998 555544 2346789
Q ss_pred ecCcccc----CCCCcHHHHHH
Q 016762 268 DSPGIIP----MRISDQAAAIK 285 (383)
Q Consensus 268 DTpG~i~----~~~~~~~~~~~ 285 (383)
||+|||. ..++....+++
T Consensus 123 dtvgfI~~ll~~Lp~~Lv~~f~ 144 (741)
T PRK09866 123 SHVAPIDCLIQQLQQRLRDCDI 144 (741)
T ss_pred CCccchHHHHHHhhHHHHHhhh
Confidence 9999998 44444444443
No 97
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.55 E-value=1.3e-07 Score=81.88 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=40.7
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--EeCC---cEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RFGK---DLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~~~---~i~l~DTpG~ 272 (383)
+|+++|++|||||||+|+|++.+ ...+..|++|.+.... ..+. .+.++||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 68999999999999999999765 3456678888775432 2222 4789999995
No 98
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.52 E-value=6.2e-07 Score=77.47 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHHhcCCCeEEEEEccCCCCHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMISMA 163 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~---l~~~l~~k~~ilVlNK~DL~~~~ 163 (383)
+..+.+||. ||| .++.+.+...+..+|++++|+|++........+ +......+|+++++||+|+....
T Consensus 50 ~~~~~~~Dt--------pG~-~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~ 120 (164)
T cd04171 50 GKRLGFIDV--------PGH-EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED 120 (164)
T ss_pred CcEEEEEEC--------CCh-HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH
Confidence 345677874 343 445555566788999999999998643222222 11122335899999999998753
Q ss_pred H----HHHHHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 164 D----RNAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 164 ~----~~~w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
. ...+.+.+.. .+..++++|+++|.|++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 121 WLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 2 2334444544 3467899999999999988766543
No 99
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.52 E-value=4.9e-07 Score=81.20 Aligned_cols=97 Identities=26% Similarity=0.212 Sum_probs=68.5
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH---HHHHHHHHH-HHcC
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA---DRNAWATYF-AKQG 176 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~---~~~~w~~~l-~~~g 176 (383)
.||| .++.+.+...+..+|+++.|+|+..+......+....+ .+.|+++++||+|+...+ ..+++.+.+ +..+
T Consensus 77 tPG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 77 TPGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp ESSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cccc-cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 4787 55778888889999999999999987655444433333 378899999999999432 123333233 2222
Q ss_pred ------CeEEEeeCcCCCchhhhhHHHHHh
Q 016762 177 ------TKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 177 ------~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
..++++|+.+|.|+..|.+.+.++
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence 358999999999999988777654
No 100
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.52 E-value=8.5e-07 Score=77.55 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcC--CeEEEeeCcC
Q 016762 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG--TKVIFSNGQL 186 (383)
Q Consensus 109 ~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g--~~vi~iSa~~ 186 (383)
...+.+...++.+|+++.|+|+..+.+.....+.....++|+++++||+|+... ....+.+.+.+.+ .+++++|+++
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEECCC
Confidence 344555556899999999999988766655555554456899999999999643 2334444455555 3789999999
Q ss_pred CCchhhhhHHHHHhhh
Q 016762 187 GMGTMKLSRLAKALAS 202 (383)
Q Consensus 187 g~Gi~~L~~~l~~l~~ 202 (383)
|.|+.+|.+.+.++..
T Consensus 132 g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 132 PQSVQQLVDYLASLTK 147 (158)
T ss_pred ccCHHHHHHHHHHhch
Confidence 9999999887766553
No 101
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.47 E-value=1e-06 Score=81.68 Aligned_cols=97 Identities=14% Similarity=0.010 Sum_probs=68.4
Q ss_pred CchHHHHHHHHHHHHhh--hcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHH----HHHH
Q 016762 103 YPGHIAKTEKELKDQLK--LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT----YFAK 174 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~id--r~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~----~l~~ 174 (383)
.||| +++.+.+..-+. .+|+++.|+|++.+......++..++. ++|.++|+||+|+++......-.+ .+..
T Consensus 91 tpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~ 169 (224)
T cd04165 91 LAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILKV 169 (224)
T ss_pred CCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhcC
Confidence 4888 555555554453 789999999998877655555544443 789999999999987754433322 3321
Q ss_pred c--------------------------CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 175 Q--------------------------GTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 175 ~--------------------------g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
. ..+++.+|+.+|.|++.|.+.|..|
T Consensus 170 ~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 170 PGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred CCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 1 1267889999999999998888765
No 102
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.46 E-value=9.5e-08 Score=89.31 Aligned_cols=63 Identities=27% Similarity=0.310 Sum_probs=45.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE----EEEEEeCCcEEEEecCccccCCCCc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPMRISD 279 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~----~~~~~~~~~i~l~DTpG~i~~~~~~ 279 (383)
.+++|.++|.|+||||||||+|.......++..+-+|.. .+.+. ++++.|.||||+=...-.|
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhh
Confidence 577899999999999999999997655555554433333 23322 4789999999997654444
No 103
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.43 E-value=2.8e-07 Score=83.60 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=39.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccC-C---CCCceeEEEEEEe--CCcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-P---RPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-~---~pgtT~~~~~~~~--~~~i~l~DTpG~i~~ 275 (383)
++|+++|.+|||||||+|+|++......+ . ...+|.....+.. ..++.++||||+-..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 57999999999999999999985322111 1 1224544443332 247899999999643
No 104
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.42 E-value=2.7e-07 Score=97.07 Aligned_cols=51 Identities=43% Similarity=0.642 Sum_probs=42.5
Q ss_pred ecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 224 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 224 G~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
|+||||||||+|+|++.+ ..+++.||+|.+.....+ +.++.++||||....
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence 899999999999999875 589999999999754332 456899999999643
No 105
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.40 E-value=7.1e-07 Score=77.25 Aligned_cols=56 Identities=27% Similarity=0.321 Sum_probs=40.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|+|++.... ...+.++.+.....+..+. .+.++||||.-
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 36999999999999999999976532 2455556655555444432 47899999953
No 106
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.39 E-value=4.9e-07 Score=77.04 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=38.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~---~~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|+|.+...... .+..+.+.....+... ..+.++||||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 3699999999999999999997653332 2333444444444432 357899999974
No 107
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.38 E-value=3.8e-07 Score=90.19 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=48.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC----Ccc-----------ccCCCCC---ceeEEEEE-------EeC----CcEEE
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKWV-------RFG----KDLEF 266 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~----~~~-----------~v~~~pg---tT~~~~~~-------~~~----~~i~l 266 (383)
..+.|++||..|+|||||||++++. +.. .+++.+| +|.++.++ ... .++.|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4578999999999999999999986 444 5788899 88887652 223 57899
Q ss_pred EecCccccC
Q 016762 267 LDSPGIIPM 275 (383)
Q Consensus 267 ~DTpG~i~~ 275 (383)
+|||||...
T Consensus 96 IDcvG~~v~ 104 (492)
T TIGR02836 96 VDCVGYTVK 104 (492)
T ss_pred EECCCcccC
Confidence 999999753
No 108
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.38 E-value=4.2e-06 Score=71.59 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (383)
+..+.+||..-.... .+.-.+...+.....+..+|++++|+|++.+....+.++.+++. +.|+++|+||+|+.....
T Consensus 44 ~~~~~i~DtpG~~~~-~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 122 (157)
T cd01894 44 GREFILIDTGGIEPD-DEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEED 122 (157)
T ss_pred CeEEEEEECCCCCCc-hhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHH
Confidence 456788885432211 11011223444556789999999999999887777766666654 689999999999987654
Q ss_pred HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762 165 RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 165 ~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
. ...+.+.+. .++++|+++|.|+.++.+.+.
T Consensus 123 ~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 123 E---AAEFYSLGFGEPIPISAEHGRGIGDLLDAIL 154 (157)
T ss_pred H---HHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence 4 223334454 688999999999988866554
No 109
>PLN03118 Rab family protein; Provisional
Probab=98.38 E-value=7.6e-07 Score=81.38 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=41.8
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|+|++.......+..|.+.....+.++. .+.|+||||..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCch
Confidence 5789999999999999999999765434444555544444444432 46899999974
No 110
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.38 E-value=6.7e-07 Score=77.50 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=40.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeC---CcEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG---KDLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~---~~i~l~DTpG~ 272 (383)
++|+++|.+|||||||+|+|++.+... ..+..|.+.....+.++ ..+.++||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 479999999999999999999776433 44555654444444443 25679999995
No 111
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.37 E-value=3.6e-07 Score=80.91 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=39.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCcccc---------------CCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v---------------~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
+|+++|.+|+|||||+|+|++...... ....|+|.+...... +..+.++||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH
Confidence 489999999999999999987643321 123566766544333 3468899999975
No 112
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.37 E-value=3.5e-07 Score=82.35 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=40.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCC------ccccCCCCCceeEEEEE--Ee---------------CCcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTRVLKWV--RF---------------GKDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~------~~~v~~~pgtT~~~~~~--~~---------------~~~i~l~DTpG~i 273 (383)
++|+++|.+|+|||||+|+|++.. ....+..+|+|.+.... .+ +..+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 369999999999999999999631 12334567888886432 11 3368899999973
No 113
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.37 E-value=4.1e-06 Score=71.84 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCC-CHHHHHHHHHHHHHcC-CeEEEeeCc
Q 016762 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQG-TKVIFSNGQ 185 (383)
Q Consensus 108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~-~~~~~~~w~~~l~~~g-~~vi~iSa~ 185 (383)
..+.+.+-.....+|+|+++.|+..+.....+.+...+ ++|+|-|+||+|+. +.++.+.-.++++..| .+++.+|+.
T Consensus 51 ~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 51 PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence 45566666677899999999999999888888888776 58999999999999 4455555556677777 457889999
Q ss_pred CCCchhhhhHHHH
Q 016762 186 LGMGTMKLSRLAK 198 (383)
Q Consensus 186 ~g~Gi~~L~~~l~ 198 (383)
+|.|+++|++.|+
T Consensus 130 ~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 130 TGEGIEELKDYLE 142 (143)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999988775
No 114
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.37 E-value=4e-06 Score=71.16 Aligned_cols=82 Identities=15% Similarity=0.052 Sum_probs=58.2
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH-HHHHHHHHHHcCC-eEEEeeCcCCCchhh
Q 016762 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD-RNAWATYFAKQGT-KVIFSNGQLGMGTMK 192 (383)
Q Consensus 115 ~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~-~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~ 192 (383)
...++.+|+++.|+|+.++.+.....+.... .+|.++|+||+||.+... .+.-.++++..+. .++.+|+++|.|+++
T Consensus 57 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 57 IVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEA 135 (142)
T ss_pred HHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence 3458999999999999988877665554443 469999999999975322 1111223344454 688899999999988
Q ss_pred hhHHH
Q 016762 193 LSRLA 197 (383)
Q Consensus 193 L~~~l 197 (383)
+.+.+
T Consensus 136 l~~~l 140 (142)
T TIGR02528 136 LVDYL 140 (142)
T ss_pred HHHHH
Confidence 76543
No 115
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.36 E-value=7.2e-07 Score=77.64 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=38.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
.+|+++|.||||||||+|+|.+.+ ......|.++.+.. .+..+. .+.++||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 579999999999999999999765 33334455544432 233332 46799999974
No 116
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.36 E-value=4.6e-07 Score=76.73 Aligned_cols=55 Identities=33% Similarity=0.448 Sum_probs=44.9
Q ss_pred EeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCccccCC
Q 016762 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPMR 276 (383)
Q Consensus 222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~i~~~ 276 (383)
++|.+|+|||||+|+|++......+..+++|.+...... ...+.++||||+....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc
Confidence 589999999999999998776668888898888665443 4579999999997543
No 117
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.35 E-value=3.6e-07 Score=79.95 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=33.0
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccccC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~ 275 (383)
+|+++|.+|||||||+|+|.+.... . ..|....+ ... -++||||+...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v~~---~~~-~~iDtpG~~~~ 50 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQAVEF---NDK-GDIDTPGEYFS 50 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceEEEE---CCC-CcccCCccccC
Confidence 5999999999999999999976421 1 23333332 111 26999998643
No 118
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.35 E-value=1.1e-06 Score=76.98 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=38.2
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~ 272 (383)
.+|++||.||||||||+|++++...... ....|.+.....+..+. .+.++||||-
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 5899999999999999999997653222 22334444434444432 5789999994
No 119
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.35 E-value=6.9e-06 Score=73.84 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=69.9
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH--HhcCCCeEEEEEccCCCCH
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ--WLGNRKRILVLNREDMISM 162 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~--~l~~k~~ilVlNK~DL~~~ 162 (383)
..+..+.+||. ||| ..+.+.+...+..+|.++.|+|++.+......+... ...+.|+++++||+|+...
T Consensus 65 ~~~~~~~i~Dt--------pG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 65 EENLQITLVDC--------PGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE 135 (192)
T ss_pred ccCceEEEEEC--------CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 34567788884 444 345566666678899999999998754332221111 1236799999999999854
Q ss_pred HH----HHHHHHHHHH-------cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 163 AD----RNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 163 ~~----~~~w~~~l~~-------~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.. .+.+.+.+.. .+..++++|+++|.|+.+|.+.+..
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 136 EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 43 2223232221 2457899999999999998777654
No 120
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.34 E-value=6.9e-06 Score=72.37 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHH
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMA 163 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~ 163 (383)
.+..+.+||. ||| .++.......+..+|+++.|+|+..+....... +..+. .++|+++|+||+|+....
T Consensus 65 ~~~~~~l~Dt--------~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 65 QEYLLNLIDT--------PGH-VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred CcEEEEEEEC--------CCC-hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 4556677874 333 445556667789999999999998765443332 22222 368999999999996432
Q ss_pred H---HHHHHHHHHHcCC---eEEEeeCcCCCchhhhhHHHH
Q 016762 164 D---RNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 164 ~---~~~w~~~l~~~g~---~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
. ...+.+ ..+. .++.+|+++|.|+.+|.+.+.
T Consensus 136 ~~~~~~~~~~---~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (179)
T cd01890 136 PERVKQQIED---VLGLDPSEAILVSAKTGLGVEDLLEAIV 173 (179)
T ss_pred HHHHHHHHHH---HhCCCcccEEEeeccCCCCHHHHHHHHH
Confidence 1 122222 2233 478999999999988866554
No 121
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.34 E-value=4.1e-06 Score=79.77 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=65.3
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHc-C-CeEEEeeCc
Q 016762 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-G-TKVIFSNGQ 185 (383)
Q Consensus 110 ~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-g-~~vi~iSa~ 185 (383)
+.+.....++.+|++++|+|+..+.... ..+...+ .++|.++|+||+|+..+.....+...+.+. + ..++++|++
T Consensus 69 ~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 69 MMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecC
Confidence 3444567789999999999998765443 3333333 368999999999998766544333333332 2 368999999
Q ss_pred CCCchhhhhHHHHHhhh
Q 016762 186 LGMGTMKLSRLAKALAS 202 (383)
Q Consensus 186 ~g~Gi~~L~~~l~~l~~ 202 (383)
+|.|+.+|.+.+.+...
T Consensus 148 ~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLP 164 (270)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999999888766543
No 122
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.34 E-value=9.7e-07 Score=77.83 Aligned_cols=56 Identities=27% Similarity=0.456 Sum_probs=38.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.......+..|.... .+.. +..+.++||||--
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCEEEEEEECCCCH
Confidence 346899999999999999999997644334444443222 2222 3457899999963
No 123
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.33 E-value=4.5e-06 Score=76.02 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=67.8
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-C-cHHHHHHh--cCCCeEEEEEccCCCCHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-T-HPLMDQWL--GNRKRILVLNREDMISMA 163 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-~-~~~l~~~l--~~k~~ilVlNK~DL~~~~ 163 (383)
..+.+||. ||| ..+.+.+...+..+|+++.|+|+..+... . ...+..+. ..+|+++|+||+|+....
T Consensus 83 ~~i~~iDt--------PG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 83 RHVSFVDC--------PGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cEEEEEEC--------CCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHH
Confidence 44667774 565 45666777778889999999999874221 1 22232222 234789999999998754
Q ss_pred HHHH----HHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 164 DRNA----WATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 164 ~~~~----w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.... ..+.+.. .+..++++|+++|.|+.+|.+.+.+
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 3322 2222322 2456899999999999988777654
No 124
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.31 E-value=9.9e-07 Score=88.88 Aligned_cols=131 Identities=23% Similarity=0.308 Sum_probs=83.4
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHc--C--------C-----
Q 016762 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--G--------T----- 177 (383)
Q Consensus 113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~--g--------~----- 177 (383)
+..+..++.-++..++|..+-..+..+.+...+..+..++..||+|+.+.+........+... + .
T Consensus 103 ~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~ 182 (572)
T KOG1249|consen 103 EKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPD 182 (572)
T ss_pred hhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcc
Confidence 333455665677777787665566677777777767789999999999877533332222211 1 0
Q ss_pred ----eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc----------
Q 016762 178 ----KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC---------- 243 (383)
Q Consensus 178 ----~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~---------- 243 (383)
.+..++++.|.|+++|.-.+..... -++ -+.++|.+||||||++|+|+.+..+
T Consensus 183 ~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-------f~G------df~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~ 249 (572)
T KOG1249|consen 183 FDFDHVDLIRAKTGYGIEELIVMLVDIVD-------FRG------DFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDR 249 (572)
T ss_pred cchhhhhhhhhhhcccHHHHHHHhhheee-------ccC------ceeeeeecccchhhHHHHHhhhccccccccceeee
Confidence 1123456667777665333322211 111 2789999999999999999976544
Q ss_pred -ccCCCCCceeEEE
Q 016762 244 -PAAPRPGVTRVLK 256 (383)
Q Consensus 244 -~v~~~pgtT~~~~ 256 (383)
..++-||||....
T Consensus 250 aT~~dwpgTtlsll 263 (572)
T KOG1249|consen 250 ATISDWPGTTLSLL 263 (572)
T ss_pred eecccCCccccchh
Confidence 3567788888753
No 125
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.31 E-value=1.2e-06 Score=76.82 Aligned_cols=57 Identities=23% Similarity=0.291 Sum_probs=39.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i 273 (383)
...+|+++|.+|||||||+|+|.+.......+..|.+...... .+..+.++||||..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~ 69 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR 69 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 3578999999999999999999986433344444544332111 14568899999963
No 126
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.30 E-value=1.3e-06 Score=83.48 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=39.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCC--------CCCce-eEEEEEEe--C---CcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP--------RPGVT-RVLKWVRF--G---KDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~--------~pgtT-~~~~~~~~--~---~~i~l~DTpG~i~ 274 (383)
..++|++||-+|+|||||+|+|.+........ ...|+ .......+ + -++.++|||||-.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 35789999999999999999999876444322 22332 22222222 2 2488999999964
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.30 E-value=7.6e-07 Score=77.54 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=36.6
Q ss_pred EEeEeecCCCChhHHHHhhhcCCcc---ccCCCCCceeEEE--EEEe-CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~---~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|+|++.... .......+|.... .+.. +..+.++||||..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh
Confidence 4899999999999999999864321 1122334444432 2333 3568899999974
No 128
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.28 E-value=1.7e-05 Score=68.74 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=62.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HHHHHHHHHHHHc-----CCeEEEeeCcC
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAKQ-----GTKVIFSNGQL 186 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~w~~~l~~~-----g~~vi~iSa~~ 186 (383)
..+..+|+++.|+|+..+.+.....+.... .++|+++++||+|+.+. .....+.+.+.+. +..++++|++.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 457899999999999988776655544443 37899999999999876 4445555555432 25688999999
Q ss_pred CCchhhhhHHHHH
Q 016762 187 GMGTMKLSRLAKA 199 (383)
Q Consensus 187 g~Gi~~L~~~l~~ 199 (383)
+.|+.++.+.+.+
T Consensus 160 ~~~i~~~~~~l~~ 172 (174)
T cd01895 160 GQGVDKLFDAIDE 172 (174)
T ss_pred CCCHHHHHHHHHH
Confidence 9999888766554
No 129
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.27 E-value=8.5e-07 Score=89.92 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=43.7
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcccc------------------------------CCCCCceeEEEEEEe---CC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~ 262 (383)
..++|+++|.+|+|||||+|+|+....... +..+|+|++.....+ +.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 457899999999999999999984322211 126899999876555 44
Q ss_pred cEEEEecCcc
Q 016762 263 DLEFLDSPGI 272 (383)
Q Consensus 263 ~i~l~DTpG~ 272 (383)
.+.++||||.
T Consensus 85 ~i~liDtpG~ 94 (425)
T PRK12317 85 YFTIVDCPGH 94 (425)
T ss_pred EEEEEECCCc
Confidence 6899999996
No 130
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.27 E-value=1e-05 Score=79.98 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH----HHHHHhc--CCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~----~l~~~l~--~k~~ilVlNK~DL~~ 161 (383)
..+.+||.... .+..|.++....+.+.+.+..+|+|++|+|+.++....+. .+...+. ++|+++|+||+|+.+
T Consensus 237 ~~i~l~DT~G~-~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 237 GEVLLTDTVGF-IRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred ceEEEEecCcc-cccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 45667775422 1234544444444555678999999999999887654332 1111222 689999999999987
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
......+ ......++++|+++|.|+++|.+.+.+
T Consensus 316 ~~~v~~~----~~~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 316 EPRIERL----EEGYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred hHhHHHH----HhCCCCEEEEEccCCCCHHHHHHHHHh
Confidence 5443221 222345789999999999988776643
No 131
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.27 E-value=1.4e-06 Score=75.37 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=38.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|++.+.. .+...+.++.+.. ...++. .+.++||||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 589999999999999999998654 2444455554422 222332 46789999964
No 132
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.26 E-value=1.4e-06 Score=75.38 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=37.2
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC--CcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~--~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++.+.......+..|.+. ..+..+ ..+.++||||.-
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence 48999999999999999999876444333334332 223333 358899999974
No 133
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.26 E-value=1.7e-06 Score=76.56 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=38.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
.+|+++|++|||||||+|+|++.......++.|.+.. .+.. +..+.++||||.-
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCeEEEEEECCCCH
Confidence 5799999999999999999986554444444444432 2233 3468999999974
No 134
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.25 E-value=2.5e-06 Score=74.67 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=37.7
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcccc--CCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v--~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|++.+.+ ... .+..|.+.....+..+. .+.+.||||-.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 3689999999999999999999754 222 22233333333344432 46799999953
No 135
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.24 E-value=2.6e-05 Score=66.79 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHH--HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC-
Q 016762 86 LDADLYYWTKSLRPVQWYPGHI--AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI- 160 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~--~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~- 160 (383)
.+.++++||.. ..-.+.+. ..+.+.....+..+|++++|+|+..+.......+.+.+. +.|.++|+||+|+.
T Consensus 49 ~~~~~~liDtp---G~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 49 DDAQIIFVDTP---GIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred CCeEEEEEECC---CCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 45678888843 22222211 223334456789999999999999885555555555444 48999999999998
Q ss_pred CHHHHHHHHHHHHHcC--CeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~~~~w~~~l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.......+...+.... ..++.+|++.+.|+.++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 126 DKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred cHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHh
Confidence 5666677777776654 57888999999999888776654
No 136
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.24 E-value=1.7e-06 Score=74.66 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=38.6
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++++.......+..|.+.+. +.. +..+.++||||..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~ 54 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYKNVSFTVWDVGGQD 54 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEECCEEEEEEECCCCh
Confidence 4899999999999999999987633344444544432 222 4468999999975
No 137
>COG1159 Era GTPase [General function prediction only]
Probab=98.24 E-value=9e-06 Score=77.08 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=82.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHH--HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHI--AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~--~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~ 161 (383)
.+...|..| +|.=..|.|. +...+.....+..+|+||+|+|+..+.+..+..+.+.+. +.|+++++||+|..+
T Consensus 52 ~~~QiIfvD---TPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 52 DNAQIIFVD---TPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred CCceEEEEe---CCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 355555555 3333345442 234445557789999999999999988887776666554 469999999999998
Q ss_pred HHH-HHHHHHHHHHcC--CeEEEeeCcCCCchhhhhHHHHHhhhh
Q 016762 162 MAD-RNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKALASD 203 (383)
Q Consensus 162 ~~~-~~~w~~~l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l~~~ 203 (383)
++. +....+++.... ..++++|+.+|.|+..|.+.+.+....
T Consensus 129 ~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 129 PKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 776 455555555443 478999999999999998888776543
No 138
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.24 E-value=2e-06 Score=74.52 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=36.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC---CcEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~i~l~DTpG~ 272 (383)
++|+++|.+|||||||+|+|.+... .....|..+.+. ..+.++ -.+.++||||.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH 59 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCcc
Confidence 3799999999999999999997652 223333333332 223332 35779999996
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.24 E-value=1.4e-06 Score=78.59 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=38.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccC---------------CCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~---------------~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|+|++....... ...|+|.+.....+ +..+.++||||.-
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~ 76 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA 76 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH
Confidence 6999999999999999999863211111 12566666543333 3468899999975
No 140
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.24 E-value=2e-06 Score=76.88 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=37.8
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..+|+++|.+|||||||+|+|.+.....+.+..+.|. ..+.. +..+.++||||..
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~ 72 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGNIKFTTFDLGGHQ 72 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECCEEEEEEECCCCH
Confidence 4679999999999999999999765333333333322 22222 3467899999975
No 141
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.24 E-value=1.6e-06 Score=78.70 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=41.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcC------Ccc---------ccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~------~~~---------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
++|+++|++|+|||||+|+|++. ... ......|+|.+...... +..+.++||||..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 57999999999999999999853 100 11125788888755444 4568999999985
No 142
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.23 E-value=1.7e-06 Score=74.81 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=36.9
Q ss_pred EEeEeecCCCChhHHHHhhhcCCc--cccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|+|++... ....+..|.+..... .-+..+.++||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE-KGNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE-ECCEEEEEEECCCCH
Confidence 378999999999999999997532 223445554433211 113457899999975
No 143
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.23 E-value=1.4e-06 Score=75.20 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=36.7
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC---CcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~---~~i~l~DTpG~i 273 (383)
+|+++|+||||||||+|+|+... .+....+++.+... ...+ ..+.++||||..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence 69999999999999999999654 23444455544221 1222 247889999964
No 144
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.22 E-value=2.8e-06 Score=73.41 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=36.8
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~ 272 (383)
++|+++|.+|+|||||+|+|.+.+. .....+..+.+. ..+..+. .+.++||||-
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 3799999999999999999997652 333333333332 2333432 4679999995
No 145
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.22 E-value=1.1e-06 Score=77.50 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=37.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccc--------------cCCCCCceeEEEEEEe--------CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF--------GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~--------------v~~~pgtT~~~~~~~~--------~~~i~l~DTpG~i~ 274 (383)
+|++||.+|||||||+|+|.+...+. .....|+|.+.+...+ ...+.++||||...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 58999999999999999998643211 1113366665443222 22467999999863
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.22 E-value=4.3e-06 Score=81.96 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCC---c-----HHHHHH---hcCCCeEEEEEccCCCCHHHHHHHHHHHHH-cCC
Q 016762 110 TEKELKDQLKLMDVVIEVRDARIPLSTT---H-----PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAK-QGT 177 (383)
Q Consensus 110 ~~~~l~~~idr~DlILeV~DaR~p~~~~---~-----~~l~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~g~ 177 (383)
+...+.+.++++|++++|+|+....... + .++..+ +.++|+++|+||+|+.+......+.+.+.+ .+.
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~ 304 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGK 304 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCC
Confidence 4455567789999999999987642111 1 112222 136899999999999877665556555543 356
Q ss_pred eEEEeeCcCCCchhhhhHHHHH
Q 016762 178 KVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 178 ~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.++++|++++.|+++|.+.+.+
T Consensus 305 ~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 305 PVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred cEEEEEccCCcCHHHHHHHHHH
Confidence 7899999999999988766544
No 147
>CHL00071 tufA elongation factor Tu
Probab=98.22 E-value=1.8e-06 Score=87.13 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=42.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc---------------ccCCCCCceeEEEEEEe---CCcEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~ 272 (383)
..++|+++|.+|+|||||+|+|++.... ..+...|+|.+...... +..+.++||||.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence 4578999999999999999999964211 11223799998654443 346899999994
No 148
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.22 E-value=3e-06 Score=78.18 Aligned_cols=59 Identities=31% Similarity=0.562 Sum_probs=47.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-CCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i~~ 275 (383)
...+|+++|+|.||||||+..+++.+ ...+..-|||+.-. .+.. +.++.++|-||||..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieG 122 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEG 122 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccc
Confidence 34689999999999999999999654 56788889998843 2333 678999999999964
No 149
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.22 E-value=1.7e-06 Score=76.60 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=35.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC---CcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~i~l~DTpG~i 273 (383)
.+|+++|.||||||||+|++++.. . ....+.++.+. .....+ -.+.++||||.-
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-F-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-ccccCcchhhhEEEEEEECCEEEEEEEEECCChH
Confidence 369999999999999999999654 2 23233333221 122222 246799999974
No 150
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.22 E-value=2e-06 Score=74.00 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=35.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
.+|+++|.+|||||||+|+|.+... ......++.+.. .+.++. .+.++||||--
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 4799999999999999999997542 233333333321 222332 25689999963
No 151
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.21 E-value=1e-05 Score=82.62 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=67.3
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CC---CcHHHHHHhcCCCeEEEEEccCCCCHHHHHH----HHHHHHH
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-ST---THPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFAK 174 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-~~---~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~----w~~~l~~ 174 (383)
-||| +.+.+.+..-+..+|+++.|+|+..+. .. ....+...++-++.++|+||+|+++.+.... ..+++..
T Consensus 124 tPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~ 202 (460)
T PTZ00327 124 CPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKG 202 (460)
T ss_pred CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHh
Confidence 3888 567777777788999999999998642 21 1222333344567899999999997554322 2222322
Q ss_pred ---cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 175 ---QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 175 ---~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+..++++|+.+|.|+..|.+.|.+
T Consensus 203 ~~~~~~~iipVSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 203 TIADNAPIIPISAQLKYNIDVVLEYICT 230 (460)
T ss_pred hccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence 2467999999999999999888774
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.21 E-value=1.2e-05 Score=71.06 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD 164 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~ 164 (383)
+.++.++|. ||+ ..........+..+|.++.|+|+..+......++.... .++|+++|+||+|+...+.
T Consensus 61 ~~~~~liDt--------pG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~ 131 (189)
T cd00881 61 DRRVNFIDT--------PGH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEED 131 (189)
T ss_pred CEEEEEEeC--------CCc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhc
Confidence 456777774 333 33445556678899999999999876655444433333 3789999999999987433
Q ss_pred HHH----HHHHHHH--------------cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 165 RNA----WATYFAK--------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 165 ~~~----w~~~l~~--------------~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
... ..+.++. ....++++|++.|.|+.++.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 132 LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 222 2222222 2466889999999999888666543
No 153
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.21 E-value=4.8e-06 Score=83.30 Aligned_cols=111 Identities=20% Similarity=0.183 Sum_probs=77.0
Q ss_pred CCCcEEEEcCC-CCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-HhcCCCeEEEEEccCCCCHH
Q 016762 86 LDADLYYWTKS-LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WLGNRKRILVLNREDMISMA 163 (383)
Q Consensus 86 ~~~~~vi~~~~-L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~-~l~~k~~ilVlNK~DL~~~~ 163 (383)
.+.-+.++|.. ++-.. ---.+-..+..++.++.+|+||+|+|+..+....+..+.. ...++|+++|+||+||.++.
T Consensus 263 ~G~pv~l~DTAGiRet~--d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 263 NGIPVRLVDTAGIRETD--DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKI 340 (454)
T ss_pred CCEEEEEEecCCcccCc--cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhccccc
Confidence 44555666654 32211 0012334556667899999999999999987777777666 34579999999999999875
Q ss_pred HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 164 DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 164 ~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
..... ....+..++.+|+++|.|+..|++.+.++.
T Consensus 341 ~~~~~---~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 341 ELESE---KLANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred ccchh---hccCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 43221 112234688999999999999988877664
No 154
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.20 E-value=1.6e-05 Score=81.48 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCC------c---HHHHHH-----------
Q 016762 86 LDADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLMDVVIEVRDARIPLSTT------H---PLMDQW----------- 144 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr~DlILeV~DaR~p~~~~------~---~~l~~~----------- 144 (383)
.+..+++||..-- .-..| .+.+...+.+.++++|+|++|+|+......+ . .+|..+
T Consensus 204 ~~~~f~laDtPGl---iegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~ 280 (500)
T PRK12296 204 GDTRFTVADVPGL---IPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLG 280 (500)
T ss_pred CCeEEEEEECCCC---ccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhh
Confidence 4456788885321 00001 1223344556789999999999996432111 1 123332
Q ss_pred -hcCCCeEEEEEccCCCCHHHHHHH-HHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762 145 -LGNRKRILVLNREDMISMADRNAW-ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (383)
Q Consensus 145 -l~~k~~ilVlNK~DL~~~~~~~~w-~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~ 202 (383)
+.++|+|+|+||+|+........+ ...+...+..++++|++++.|+.+|...+.++..
T Consensus 281 ~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 281 DLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred hhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 236899999999999765443333 3345556778999999999999998777666543
No 155
>PRK09866 hypothetical protein; Provisional
Probab=98.19 E-value=2.2e-05 Score=81.74 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C--CCeEEEEEccCCCC-
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMIS- 161 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~--k~~ilVlNK~DL~~- 161 (383)
...+++.|...- + -|++ ..+.+.+.+.++++|+||+|+|+..+.+..+..+.+.+. + .|+++|+||+|+.+
T Consensus 229 ~~QIIFVDTPGI--h-k~~~-~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr 304 (741)
T PRK09866 229 PGQLTLLDTPGP--N-EAGQ-PHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR 304 (741)
T ss_pred cCCEEEEECCCC--C-Cccc-hHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc
Confidence 456667774322 1 1221 224555667899999999999998877777766666554 3 49999999999986
Q ss_pred ----HHHHHHHHH-HHHHcC---CeEEEeeCcCCCchhhhhHHHHH
Q 016762 162 ----MADRNAWAT-YFAKQG---TKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 162 ----~~~~~~w~~-~l~~~g---~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+....... .+.+.+ ..++++|++.|.|+..|.+.+..
T Consensus 305 eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 333333332 222222 46899999999999998777765
No 156
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.19 E-value=2.9e-06 Score=73.92 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=37.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
.+|+++|.+|||||||+|++.+.. ......|..+.+. ..+.++. .+.++||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 579999999999999999999754 2333344444333 2233332 47899999953
No 157
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.19 E-value=3.9e-06 Score=73.11 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=35.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~ 272 (383)
.+|+++|.+|||||||+|+|.+...... ....|+......+..+. .+.++||||-
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 5799999999999999999986432111 11222222223334433 5689999995
No 158
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.19 E-value=3.7e-06 Score=72.82 Aligned_cols=53 Identities=25% Similarity=0.443 Sum_probs=35.6
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~ 272 (383)
+|+++|.+|||||||+|+|.+.+. .....+..+.+ ...+.++. .+.++||||.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~ 59 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcch
Confidence 699999999999999999986542 22222333322 22333332 4679999996
No 159
>PRK00089 era GTPase Era; Reviewed
Probab=98.18 E-value=3.8e-05 Score=73.85 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCcCCCchH--HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC-
Q 016762 86 LDADLYYWTKSLRPVQWYPGH--IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI- 160 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh--~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~- 160 (383)
.+..++++|.. ...-+.+ .+.+.+.....+..+|+|++|+|+..+.......+...+. +.|.++|+||+|+.
T Consensus 51 ~~~qi~~iDTP---G~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 51 DDAQIIFVDTP---GIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred CCceEEEEECC---CCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC
Confidence 34678888853 2222211 1122334456789999999999998866655555555543 57999999999999
Q ss_pred CHHHHHHHHHHHHHc--CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 161 SMADRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 161 ~~~~~~~w~~~l~~~--g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
+........+.+.+. ...++++|+++|.|+.+|.+.+.+..
T Consensus 128 ~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 128 DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 555555555555442 25688999999999999887776654
No 160
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.17 E-value=6.6e-06 Score=71.71 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=61.6
Q ss_pred HHHHHHHhhhcCeEEEEEecCCC-CCCCcH-----HHHHHh---cCCCeEEEEEccCCCCHHHHHHHHHHHHHc--CCeE
Q 016762 111 EKELKDQLKLMDVVIEVRDARIP-LSTTHP-----LMDQWL---GNRKRILVLNREDMISMADRNAWATYFAKQ--GTKV 179 (383)
Q Consensus 111 ~~~l~~~idr~DlILeV~DaR~p-~~~~~~-----~l~~~l---~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~--g~~v 179 (383)
...+.+.++.+|++++|+|+.++ ....+. ++.... ..+|+++|+||+|+.+......|...+.+. +..+
T Consensus 69 ~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 69 GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPV 148 (170)
T ss_pred hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCE
Confidence 34444567889999999999876 222111 122221 258899999999998877666666554443 5678
Q ss_pred EEeeCcCCCchhhhhHHHHH
Q 016762 180 IFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 180 i~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+|++.+.|+.++.+.+.+
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 149 FPISALTGEGLDELLRKLAE 168 (170)
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 89999999999888665543
No 161
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.17 E-value=2.3e-06 Score=80.02 Aligned_cols=57 Identities=30% Similarity=0.465 Sum_probs=49.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccc--cCCCCCceeEEEEEEeCCcEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~~~i~l~DTpG~ 272 (383)
+.+++++.|.+|||||||||.++..+... ...++|-|+.++.++++..++++|-||.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGY 193 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCc
Confidence 45679999999999999999999765432 3448999999999999999999999994
No 162
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.17 E-value=3.3e-06 Score=73.69 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=34.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~ 272 (383)
+|+++|.+|||||||+|+|.+.. ......+..+.+. ..+.++. .+.++||||.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ 59 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh
Confidence 69999999999999999999764 2222222222222 2233332 3568999996
No 163
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.17 E-value=3.7e-06 Score=71.66 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=36.4
Q ss_pred EeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC-CcEEEEecCccc
Q 016762 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG-KDLEFLDSPGII 273 (383)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~-~~i~l~DTpG~i 273 (383)
|+++|.+|||||||+|+|.+.. ......|.+..+......+ ..+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 7999999999999999999764 2333344433333322222 357899999963
No 164
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.16 E-value=4e-06 Score=75.12 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=36.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCcee---EEEEEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~---~~~~~~~~~---~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|++++.. ...+....|+. ....+.++. .+.++||||--
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence 369999999999999999999754 33333333332 223344433 25589999974
No 165
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.16 E-value=3.8e-06 Score=72.62 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=35.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC-----CcEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-----KDLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-----~~i~l~DTpG~ 272 (383)
+|+++|.+|||||||+|++++.. ......|..+.+.. .+.+. -.+.++||||-
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 69999999999999999999754 22222333333432 22222 24789999995
No 166
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.16 E-value=2.5e-06 Score=73.73 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=36.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
.+|+++|.+|||||||+|++.+.. .+...+.|+.+. ..+.++. .+.+.||||.-
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 479999999999999999998654 233334444332 2233332 35679999974
No 167
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.16 E-value=2.4e-06 Score=81.42 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=39.1
Q ss_pred EEeEeecCCCChhHHHHhhhcCCc-----ccc------------CCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRM-----CPA------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~-----~~v------------~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
+|+++|.+|+|||||+|+|..... ..+ ....|+|.+.....+ +..+.++||||...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence 389999999999999999963211 011 124578877544333 45788999999753
No 168
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.16 E-value=5.3e-06 Score=72.44 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=36.1
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCce--eEEEEEEeC---CcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~---~~i~l~DTpG~i 273 (383)
.+|+++|.+|||||||+|+|.+.+. .....|.++ -....+..+ -.+.+.||||.-
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 4799999999999999999997652 222223222 222222222 247899999964
No 169
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.15 E-value=2.2e-06 Score=72.83 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=31.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~ 272 (383)
+|+++|.+|||||||+|+|++... .. ..|....+ .. .++||||.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---~~--~~t~~~~~---~~--~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---LY--KKTQAVEY---ND--GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---cc--ccceeEEE---cC--eeecCchh
Confidence 689999999999999999997653 11 12322222 22 68999997
No 170
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.15 E-value=4e-06 Score=76.94 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=38.2
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC----CcEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG----KDLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~----~~i~l~DTpG~ 272 (383)
+|++||++|||||||+|+|.+.. ......|.++.+... +.++ -.+.+.||||-
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 69999999999999999999654 334445666556432 3332 24679999995
No 171
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.14 E-value=3.7e-06 Score=72.80 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=34.8
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|+|.........+..|.+ ...+.. +..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFN--VETVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcC--eEEEEECCEEEEEEECCCCH
Confidence 4899999999999999999765433222222222 212222 3467899999974
No 172
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.14 E-value=3.4e-06 Score=73.31 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=37.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
.+|+++|.+|||||||+|++.... .....+.|+.+.. .+.++. .+.+.||||.-
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence 479999999999999999998543 3344445554432 223332 35689999974
No 173
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.13 E-value=4.2e-06 Score=76.00 Aligned_cols=54 Identities=31% Similarity=0.552 Sum_probs=37.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++.+.. ......|.++.+.. .+..+. .+.++||||.-
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~-f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE-FPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC-CCcccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 69999999999999999999754 22233455544432 233333 36699999975
No 174
>PRK13768 GTPase; Provisional
Probab=98.13 E-value=1.5e-05 Score=75.23 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=73.8
Q ss_pred ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhh--cCeEEEEEecCCCCCCCcHHHHHH-------hcCCCeEE
Q 016762 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL--MDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRIL 152 (383)
Q Consensus 82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr--~DlILeV~DaR~p~~~~~~~l~~~-------l~~k~~il 152 (383)
..+..+.|+++||.. .|.-+-.++...+.+.+.+.+ .++|++|+|++......+.....+ ..++|.++
T Consensus 91 ~l~~~~~~~~~~d~~---g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~ 167 (253)
T PRK13768 91 EIESLDADYVLVDTP---GQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIP 167 (253)
T ss_pred HHHhcCCCEEEEeCC---cHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 345566799999953 221111112334444445555 899999999987555444333322 24789999
Q ss_pred EEEccCCCCHHHHHHHHHHH----------------------------HHcC--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 153 VLNREDMISMADRNAWATYF----------------------------AKQG--TKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 153 VlNK~DL~~~~~~~~w~~~l----------------------------~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
|+||+|+.+..+.....+++ ++.+ ..++++|++++.|+++|.+.+.+..
T Consensus 168 v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 168 VLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred EEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 99999999776543322222 2223 4678899999999998887776653
No 175
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.13 E-value=3.3e-06 Score=73.91 Aligned_cols=53 Identities=26% Similarity=0.249 Sum_probs=35.0
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCc----eeEEEEEEeCCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV----TRVLKWVRFGKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgt----T~~~~~~~~~~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|+|.+... .+..|.+ |.........-.+.++||||.-
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PENVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 699999999999999999987542 2223332 2222111112357899999974
No 176
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.12 E-value=5e-06 Score=73.21 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=38.1
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
.++|.++|.+|||||||+|+|...... ...|.++.+...+.. ...+.+.||||.-
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNVETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccceEEEEECCEEEEEEECCCCH
Confidence 468999999999999999999854422 233433333333333 3458899999984
No 177
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.12 E-value=5.1e-06 Score=74.19 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=37.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..+|+++|.+|||||||+|+|.+.......+..+.+. ..+.. +..+.++||||-.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence 4579999999999999999999765322222222221 22223 3467899999953
No 178
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.12 E-value=1.1e-05 Score=79.23 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCC--CcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHH---hcCCCeEEEEEc
Q 016762 87 DADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQW---LGNRKRILVLNR 156 (383)
Q Consensus 87 ~~~~vi~~~~L~--~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~---l~~k~~ilVlNK 156 (383)
+..+++||..-- ...+ ...+...+.+.+++++++++|+|+..+.+..+. ++..+ +.++|+++|+||
T Consensus 205 ~~~~~i~D~PGli~ga~~----~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NK 280 (335)
T PRK12299 205 YKSFVIADIPGLIEGASE----GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNK 280 (335)
T ss_pred CcEEEEEeCCCccCCCCc----cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEEC
Confidence 345788875311 1110 123445666789999999999999865422111 12222 126899999999
Q ss_pred cCCCCHHHHH-H-HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 157 EDMISMADRN-A-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 157 ~DL~~~~~~~-~-w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
+|+.+..... . ...++...+..++++|++++.|+++|.+.+.++.
T Consensus 281 iDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 281 IDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred cccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 9998654322 1 2222334457889999999999999877766543
No 179
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.12 E-value=5.6e-06 Score=71.82 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=35.9
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++.+... ......++.+.. ...++. .+.++||||.-
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 699999999999999999997542 233333443322 222322 46689999974
No 180
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.11 E-value=5.1e-06 Score=71.45 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=35.3
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|+|.+... .....+.++.+.. .+.... .+.++||||-.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKF-NEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 699999999999999999997543 2222233323322 222222 47799999953
No 181
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.11 E-value=4.9e-05 Score=68.79 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HHHHHh-----cCCCeEEEEEccCCCCH
Q 016762 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISM 162 (383)
Q Consensus 89 ~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~ 162 (383)
.+.+||..-.- ..++.++..........+..+|++++|+|++.+....+. .+..++ .++|+++|+||+|+.+.
T Consensus 90 ~~~i~Dt~G~~-~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 90 EVLLTDTVGFI-RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred eEEEeCCCccc-cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 56777753321 122322322223333456789999999999987655432 122222 25799999999999876
Q ss_pred HHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 163 ~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.... ..+...+..++++|+++|.|+.++.+.+.
T Consensus 169 ~~~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 169 EELE---ERLEAGRPDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred HHHH---HHhhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence 5443 22334456789999999999988866543
No 182
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.11 E-value=3.5e-06 Score=72.32 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=38.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC---CcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~---~~i~l~DTpG~i~ 274 (383)
+|+++|.+|||||||+|+|++.. ..+....+|.+... +..+ -.+.++||||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence 48999999999999999999765 44555555554332 2333 2467899999753
No 183
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.11 E-value=1.3e-05 Score=69.86 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=67.6
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---hcCCCeEEEEEccCC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---LGNRKRILVLNREDM 159 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l~~k~~ilVlNK~DL 159 (383)
....++-+||.. |+ .+........++.+|+++.|+|...+.+..+.. +..+ ..+.|+++|+||+|+
T Consensus 46 ~~~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 46 GKTILVDFWDTA--------GQ-ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred CEEEEEEEEeCC--------Cc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccC
Confidence 344566778743 22 344445557789999999999987665433221 1111 126899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 160 ~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.+.. .....+...+.+..++.+|+++|.|+.++.+.+.
T Consensus 117 ~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 117 DPSV-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred chhH-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 6432 2223333334467788999999999988865544
No 184
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.09 E-value=4.9e-06 Score=87.40 Aligned_cols=58 Identities=26% Similarity=0.399 Sum_probs=45.6
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CC-cEEEEecCccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGII 273 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~i~l~DTpG~i 273 (383)
.++++|+++|.+|+|||||+|+|.+.+ +..+..+|+|.+.....+ +. .+.++||||.-
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 456789999999999999999999764 445566889988654333 33 79999999964
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.09 E-value=5.1e-05 Score=64.03 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH--hcCCCeEEEEEccCCCCHHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMAD 164 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~--l~~k~~ilVlNK~DL~~~~~ 164 (383)
..++.+||..-.. .+..............+..+|++++|+|+..+.......+... ..+.|.++|+||+|+.....
T Consensus 44 ~~~~~~~Dt~g~~--~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 44 LGPVVLIDTPGID--EAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred CCcEEEEECCCCC--ccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhh
Confidence 5678888854321 1111112223455577899999999999998776665542222 24789999999999998876
Q ss_pred HHHHHH---H--HHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 165 RNAWAT---Y--FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 165 ~~~w~~---~--l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
...+.. . ....+..++++|++++.|+.++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~ 161 (163)
T cd00880 122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIE 161 (163)
T ss_pred HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHh
Confidence 666532 1 1123467888999999999888766543
No 186
>PRK12735 elongation factor Tu; Reviewed
Probab=98.09 E-value=5.7e-06 Score=83.18 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=42.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC------Cccc---------cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~------~~~~---------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
..++|+++|.+|+|||||+|+|++. .... .....|+|.+...... +..+.++||||.-
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 4578999999999999999999852 1111 1125789998765554 3468999999973
No 187
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.09 E-value=5.1e-06 Score=72.56 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=34.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccc--cCCCCCceeEEEEEEeC---CcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i~ 274 (383)
.+|+++|.+|||||||+|++++..... ....+.+++. ....+ ..+.++||||.-.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEE--EEEECCEEEEEEEEECCCCCc
Confidence 479999999999999999999754211 1111112211 11222 2467999999853
No 188
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.09 E-value=6.8e-06 Score=71.95 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=35.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC---CcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~i~l~DTpG~i 273 (383)
.+|+++|.||||||||+|++.+... ......++.+. ..+.++ ..+.++||||.-
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE 60 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcc
Confidence 4799999999999999999986542 22223333222 222333 256799999964
No 189
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.08 E-value=5.7e-06 Score=72.67 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=37.1
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~ 272 (383)
+|+++|.+|||||||+|+|++.......+..|.+.. .+.. +..+.++||||-
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~ 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGG 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCc
Confidence 378999999999999999997633334455555432 2233 346889999995
No 190
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.08 E-value=7.6e-06 Score=73.04 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=36.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe------CCcEEEEecCcc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGI 272 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~------~~~i~l~DTpG~ 272 (383)
.++|+++|.+|||||||+|++..... +...|.++.+...+.+ +-.+.++||||.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 62 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ 62 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCCceEEEEEECCCc
Confidence 46899999999999999999986543 2333332222222222 235789999996
No 191
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.08 E-value=2.4e-05 Score=82.34 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH----HHHHHHHHc-
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN----AWATYFAKQ- 175 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~----~w~~~l~~~- 175 (383)
||| .++.+.+...+..+|+++.|+|+..+......+...++ .+.| .++|+||+|+++.+... ...+.+...
T Consensus 58 PGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~ 136 (581)
T TIGR00475 58 PGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI 136 (581)
T ss_pred CCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 777 56677777778999999999999875432222211122 2556 99999999999865332 222223332
Q ss_pred ---CCeEEEeeCcCCCchhhhhHHHHHhhhh
Q 016762 176 ---GTKVIFSNGQLGMGTMKLSRLAKALASD 203 (383)
Q Consensus 176 ---g~~vi~iSa~~g~Gi~~L~~~l~~l~~~ 203 (383)
+..++++|+++|.|+.++.+.+.++...
T Consensus 137 ~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 137 FLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 3578999999999999988777665543
No 192
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.08 E-value=1.9e-05 Score=67.38 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=63.2
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh
Q 016762 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (383)
Q Consensus 113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~ 192 (383)
.....+.++|+++.|+|+..+.+..+.++.....++|+++|+||+|+.+.... .....+..++.+|++++.|+.+
T Consensus 73 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 73 RAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred HHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHH
Confidence 34456789999999999998777776665555568999999999999876543 1223356789999999999998
Q ss_pred hhHHHHH
Q 016762 193 LSRLAKA 199 (383)
Q Consensus 193 L~~~l~~ 199 (383)
|.+.+.+
T Consensus 148 l~~~l~~ 154 (157)
T cd04164 148 LKEALLE 154 (157)
T ss_pred HHHHHHH
Confidence 8776554
No 193
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.08 E-value=7.1e-06 Score=73.69 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=35.2
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCC-CceeEE--EEEEeCC---cEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL--KWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-gtT~~~--~~~~~~~---~i~l~DTpG~ 272 (383)
+|+++|.+|||||||+|++.+.. ...+..+ .++.+. ..+.++. .+.++||||-
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGA-FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence 69999999999999999998754 2233322 222232 2233332 4678999994
No 194
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.08 E-value=8.3e-06 Score=71.06 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=35.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE-EEEEEe---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~-~~~~~~---~~~i~l~DTpG~i~ 274 (383)
++|+++|.+|||||||+|+|++.+. .....|..... ...... ...+.++||||...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 4799999999999999999997653 22222222111 111122 12478999999863
No 195
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.07 E-value=6.8e-06 Score=81.18 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=38.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC-----CccccCCCCCceeEEEEEEeC--CcEEEEecCccccCCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGIIPMRI 277 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pgtT~~~~~~~~~--~~i~l~DTpG~i~~~~ 277 (383)
.+++|||+|-+|+|||||||+|.|- ..+.+|-. -||.....+... .++.|.|.||+=.+.+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 3678999999999999999999862 22233332 466666655543 5899999999965543
No 196
>PRK15494 era GTPase Era; Provisional
Probab=98.07 E-value=4.9e-05 Score=74.88 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (383)
+..+++||....... +..-.....+.....+..+|+|++|+|+..........+...+. +.|.++|+||+|+.+..
T Consensus 99 ~~qi~~~DTpG~~~~-~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~- 176 (339)
T PRK15494 99 DTQVILYDTPGIFEP-KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY- 176 (339)
T ss_pred CeEEEEEECCCcCCC-cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc-
Confidence 456788886432100 00001223344445689999999999988765554444443332 56889999999997542
Q ss_pred HHHHHHHHHHcC--CeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762 165 RNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (383)
Q Consensus 165 ~~~w~~~l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l~~ 202 (383)
.....+++...+ ..++++|+++|.|+.+|.+.+.+...
T Consensus 177 ~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 177 LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 333334444433 46889999999999998777766543
No 197
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.06 E-value=3e-05 Score=82.04 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=69.2
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCC-eEEEEEccCCCCHHHHH----HHHHHHHHcC
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN----AWATYFAKQG 176 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~~----~w~~~l~~~g 176 (383)
||| +++.+.+...+..+|+++.|+|+..+......+...++. +.+ .++|+||+|+++.+... .+.+.+...+
T Consensus 59 PGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~ 137 (614)
T PRK10512 59 PGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYG 137 (614)
T ss_pred CCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcC
Confidence 788 566777777789999999999998765544333333322 445 57999999998754332 3333444434
Q ss_pred ---CeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762 177 ---TKVIFSNGQLGMGTMKLSRLAKALAS 202 (383)
Q Consensus 177 ---~~vi~iSa~~g~Gi~~L~~~l~~l~~ 202 (383)
..++++|+++|.|+..|.+.+.++..
T Consensus 138 ~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 138 FAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 46899999999999999888876643
No 198
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.05 E-value=9.6e-06 Score=72.50 Aligned_cols=55 Identities=29% Similarity=0.381 Sum_probs=36.9
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++.+..... ..+..|.+.....+.++. .+.++||||.-
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 69999999999999999999764221 223333333333444433 35789999963
No 199
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.04 E-value=3.5e-05 Score=77.75 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CCCc-HHHH--HHhcCCCeEEEEEccCCCCHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTH-PLMD--QWLGNRKRILVLNREDMISMA 163 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-~~~~-~~l~--~~l~~k~~ilVlNK~DL~~~~ 163 (383)
..+.++|. ||| +++.+.+...+..+|++++|+|++.+. .... ..+. ..+..++.++++||+|+.+.+
T Consensus 80 ~~i~liDt--------PGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 80 RRVSFVDA--------PGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred cEEEEEEC--------CCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence 34556663 777 556677777778899999999999764 2221 1222 222346789999999998754
Q ss_pred HHHH----HHHHHHHc---CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 164 DRNA----WATYFAKQ---GTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 164 ~~~~----w~~~l~~~---g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.... ..+.+... +..++++|+++|.|+..|.+.+...
T Consensus 151 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 151 KALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 3221 11222221 4568899999999999988877664
No 200
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.03 E-value=2e-05 Score=71.02 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-Hh-cCCCeEEEEEccCCCCHH-
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISMA- 163 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~~- 163 (383)
+..+.+||. ||| .++.......+..+|.++.|+|+..........+.. .. .+.|.++|+||+|+....
T Consensus 64 ~~~~~l~Dt--------pG~-~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~ 134 (194)
T cd01891 64 DTKINIVDT--------PGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARP 134 (194)
T ss_pred CEEEEEEEC--------CCc-HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH
Confidence 455667774 444 456666777899999999999998643222222222 11 368999999999996432
Q ss_pred --HHHHHHHHHHH-------cCCeEEEeeCcCCCchhhhh
Q 016762 164 --DRNAWATYFAK-------QGTKVIFSNGQLGMGTMKLS 194 (383)
Q Consensus 164 --~~~~w~~~l~~-------~g~~vi~iSa~~g~Gi~~L~ 194 (383)
....+.+.+.. .+..++++|+++|.|+.+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccc
Confidence 23444444432 24678899999999886653
No 201
>COG2262 HflX GTPases [General function prediction only]
Probab=98.03 E-value=3.5e-05 Score=75.94 Aligned_cols=124 Identities=20% Similarity=0.223 Sum_probs=81.7
Q ss_pred EEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-----cCCCeEEEEEccCCCCHHHH
Q 016762 92 YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-----GNRKRILVLNREDMISMADR 165 (383)
Q Consensus 92 i~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l-----~~k~~ilVlNK~DL~~~~~~ 165 (383)
+..+-..-++-.|-+.-.+-+.+.+-+..+|++|.|+|+.+|....+.+ ....+ ..+|.|+|+||+|+++....
T Consensus 243 lLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~ 322 (411)
T COG2262 243 LLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI 322 (411)
T ss_pred EEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh
Confidence 3334444455566667777777777789999999999999984433322 11222 26899999999999876652
Q ss_pred HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCC
Q 016762 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVG 229 (383)
Q Consensus 166 ~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvG 229 (383)
.. .+.......+++|+++|.|++.|++.+.+...... ...-..+.+.+.|
T Consensus 323 ~~---~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~-----------~~~~l~lp~~~~~ 372 (411)
T COG2262 323 LA---ELERGSPNPVFISAKTGEGLDLLRERIIELLSGLR-----------TEVTLELPYTDAG 372 (411)
T ss_pred hh---hhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhcc-----------cceEEEcCccccc
Confidence 21 12222225889999999999999888766543211 1123456777777
No 202
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.03 E-value=1.4e-05 Score=69.81 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=36.2
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCce---eEEEEEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT---RVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT---~~~~~~~~~~---~i~l~DTpG~i 273 (383)
.+|.++|.+|||||||+|++.+... ....+.++ .....+.++. .+.+.||||--
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 5799999999999999999996542 23333332 2222334432 46899999963
No 203
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.02 E-value=9.8e-06 Score=71.20 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=35.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i 273 (383)
+|.++|.+|||||||+|+|.+.. ... +..|..... +.. +..+.++||||..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQ--PIPTIGFNVETVEYKNLKFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCC--cCCcCceeEEEEEECCEEEEEEECCCCh
Confidence 48899999999999999999753 122 334443322 222 3367899999974
No 204
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.02 E-value=1.3e-05 Score=70.31 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=35.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|++.+... ......++.+.. .+.++. .+.++||||--
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 3699999999999999999986542 222223333321 233333 25689999964
No 205
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.01 E-value=9.7e-05 Score=64.05 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD 164 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~ 164 (383)
+.++.+||. ||| ..+.......+..+|+++.|+|+..+...........+ .++|.++|+||+|+.....
T Consensus 49 ~~~~~iiDt--------pG~-~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 49 IPGITFIDT--------PGH-EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP 119 (168)
T ss_pred cceEEEEeC--------CCc-HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH
Confidence 567788884 333 23333334567899999999999865432222222222 3789999999999974321
Q ss_pred --HHHHHHHHHH-------cCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 165 --RNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 165 --~~~w~~~l~~-------~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
.......+.. ....++.+|++.|.|+.+|.+.+.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 120 ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1111111111 124688999999999999877766543
No 206
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.01 E-value=1.2e-05 Score=70.09 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=36.7
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
..+|+++|.+|||||||+|+|++.. ......+..+.+.. .+.+.. .+.+.||||.-
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3689999999999999999998643 22233333333332 223322 36788999963
No 207
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.01 E-value=1.4e-05 Score=72.35 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=36.6
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|++.+.... ...+..|.......+.++. .+.|+||||--
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 468999999999999999999975421 1122222222222333332 46799999953
No 208
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.00 E-value=2.5e-05 Score=67.64 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---cCCCeEEEEEccCCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---GNRKRILVLNREDMI 160 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l---~~k~~ilVlNK~DL~ 160 (383)
...++.+||.. |+ ..........++++|++++|+|..++.+..+. -++.+. .+.|.++|.||+|+.
T Consensus 50 ~~~~l~i~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 50 NTVELFIFDSA--------GQ-ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred CEEEEEEEECC--------CH-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 34667888842 32 44445556778999999999998765433211 111111 257999999999997
Q ss_pred CHHHHH--HHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 161 SMADRN--AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 161 ~~~~~~--~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+..+.. ....+....+..++.+|+++|.|+.++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 121 DKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 553221 11222233466788999999999988866554
No 209
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.00 E-value=1.3e-05 Score=70.14 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=36.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~ 272 (383)
..++|+++|.+|||||||+|++.+.. ......+..+.+. ..+.++. .+.+.||||-
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh
Confidence 34789999999999999999998654 2222222222222 2223322 3678899995
No 210
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.00 E-value=1.3e-05 Score=69.50 Aligned_cols=55 Identities=25% Similarity=0.295 Sum_probs=35.3
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCce-eEE--EEEEe--C--CcEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVL--KWVRF--G--KDLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT-~~~--~~~~~--~--~~i~l~DTpG~ 272 (383)
++|+++|.+|||||||+|+|.............++ -+. ....+ + -.+.++||||.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH
Confidence 36999999999999999999854222233333333 122 12222 1 25789999995
No 211
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.00 E-value=8.2e-06 Score=88.06 Aligned_cols=59 Identities=31% Similarity=0.508 Sum_probs=46.7
Q ss_pred CCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 214 ~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
..+++.|+++|++|+|||||+|+|++.+ +..+..+|+|.+...+.+ +..+.++||||.-
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 3467889999999999999999998754 455667889988754443 4578999999974
No 212
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.99 E-value=1.4e-05 Score=69.52 Aligned_cols=56 Identities=29% Similarity=0.387 Sum_probs=34.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeC-C--cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG-K--DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~-~--~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|++.+...... .+..+.+.......++ . .+.+.||||.-
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 3699999999999999999986532111 1111222222222233 2 46789999964
No 213
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.98 E-value=2.1e-05 Score=67.44 Aligned_cols=80 Identities=19% Similarity=0.131 Sum_probs=56.2
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHH-HHh-cCCCeEEEEEccCCCCHHHHHHHHHHHH-HcCCeEEEeeCcCCCchhhhhH
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~-~~l-~~k~~ilVlNK~DL~~~~~~~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~ 195 (383)
+.+|++++|+|+..+... ..+. .+. .++|+++|+||+|+.+......+.+.+. ..+..++++|+..|.|+.++.+
T Consensus 73 ~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 73 EKPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CCCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 599999999999875332 2222 222 3789999999999986543333333332 3467899999999999988876
Q ss_pred HHHHh
Q 016762 196 LAKAL 200 (383)
Q Consensus 196 ~l~~l 200 (383)
.+..+
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 66544
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.98 E-value=1.2e-05 Score=75.17 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=36.2
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccc-----cC------------CCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCP-----AA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~-----v~------------~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
+|+++|.+|+|||||+|+|+...... +. ..-|+|.+.....+ +.++.++||||...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence 38999999999999999998542211 11 11233433332222 45789999999963
No 215
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.98 E-value=1.2e-05 Score=86.43 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=40.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcc-----ccCC------------CCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMC-----PAAP------------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v~~------------~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
.+|+|+|.+|+|||||+|+|...... .+.+ ..|+|.+.....+ +..+.++||||...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 37999999999999999999743211 1111 3578877543332 55789999999974
No 216
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.98 E-value=1.7e-05 Score=68.75 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=35.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
.+|+++|.||||||||+|++..... ......++.+. ..+.++. .+.++||||.-
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 4799999999999999999986532 22222232222 2233322 36789999963
No 217
>PRK00007 elongation factor G; Reviewed
Probab=97.98 E-value=9.6e-06 Score=87.20 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=41.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCc-----cccC------------CCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~------------~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
.+|+|+|.+|+|||||+|+|..... -.+. ...|+|.+.....+ +..+.|+||||+..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 4799999999999999999963111 0122 25688888543332 56799999999864
No 218
>PTZ00099 rab6; Provisional
Probab=97.97 E-value=4.2e-05 Score=68.17 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=68.8
Q ss_pred cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEc
Q 016762 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNR 156 (383)
Q Consensus 83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK 156 (383)
+....+.+.+||.. |+ .+........++.+|++|+|||...+.+..+. .+..+. ...|+++|.||
T Consensus 24 ~~~~~v~l~iwDt~--------G~-e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 24 LDEGPVRLQLWDTA--------GQ-ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred ECCEEEEEEEEECC--------Ch-HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 34456788899852 22 45555556778999999999998765443222 222222 14578999999
Q ss_pred cCCCCHH--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 157 EDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 157 ~DL~~~~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+||.... ............+..++.+|+++|.|+.++.+.+.+
T Consensus 95 ~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~ 139 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAA 139 (176)
T ss_pred cccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 9996421 111222223344566778999999999888655443
No 219
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.97 E-value=1.3e-05 Score=71.96 Aligned_cols=53 Identities=25% Similarity=0.208 Sum_probs=34.8
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC-C--cEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~--~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|+|.... .....+.++.+. ..+.++ . .+.++||||.-
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 48999999999999999998543 223334444322 122232 2 36789999963
No 220
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.96 E-value=1.3e-05 Score=69.20 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||. ||+ .+........+..+|++++|+|+.++.+.. ...+...+ .+.|+++|+||+|+
T Consensus 43 ~~~l~i~D~--------~G~-~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (160)
T cd04156 43 HLSLTVWDV--------GGQ-EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113 (160)
T ss_pred ceEEEEEEC--------CCC-HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccc
Confidence 356778884 222 344444556789999999999998764222 22233332 36799999999999
Q ss_pred CCHHHHHHHHHHHH------HcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADRNAWATYFA------KQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~~~w~~~l~------~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
............+. ..+..++.+|+++|.|+.++.+.+
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 114 PGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred ccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence 64221122222211 112357789999999998886554
No 221
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.96 E-value=3.6e-05 Score=66.58 Aligned_cols=102 Identities=12% Similarity=0.097 Sum_probs=63.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||.. |+ .++.......+..+|++++|+|+.++.+.. ...+..++ .++|+++|+||+|+
T Consensus 42 ~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl 112 (158)
T cd04151 42 NLKFQVWDLG--------GQ-TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDM 112 (158)
T ss_pred CEEEEEEECC--------CC-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCC
Confidence 4556677743 32 333344446789999999999987653211 12232222 26899999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.......+....+. ..+..++++|+++|.|+.++.+.+
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 113 PGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 74322222222221 112468999999999998886554
No 222
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.95 E-value=1.1e-05 Score=84.99 Aligned_cols=54 Identities=28% Similarity=0.416 Sum_probs=41.1
Q ss_pred EEeEeecCCCChhHHHHhhhcCC--ccccCCCCCceeEEEEEEe---CCcEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~ 272 (383)
.|+++|++|+|||||+|+|++.. .......+|+|.+.....+ +..+.++||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 58999999999999999999753 1223446799988754333 346789999995
No 223
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.95 E-value=6.1e-05 Score=77.00 Aligned_cols=82 Identities=27% Similarity=0.359 Sum_probs=59.9
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh
Q 016762 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (383)
Q Consensus 113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~ 192 (383)
...+.+..+|++++|+|+..+.+..+.++.....++|+++|+||+|+.+..... ...+..++++|+++|.|+++
T Consensus 287 ~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~ 360 (449)
T PRK05291 287 RSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDE 360 (449)
T ss_pred HHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHH
Confidence 345678999999999999887665443332223578999999999998654322 22345688999999999998
Q ss_pred hhHHHHHh
Q 016762 193 LSRLAKAL 200 (383)
Q Consensus 193 L~~~l~~l 200 (383)
|.+.+.+.
T Consensus 361 L~~~L~~~ 368 (449)
T PRK05291 361 LREAIKEL 368 (449)
T ss_pred HHHHHHHH
Confidence 87766543
No 224
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.95 E-value=9.3e-05 Score=67.12 Aligned_cols=87 Identities=20% Similarity=0.145 Sum_probs=59.1
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCC-eEEEEEccCCCCHHHHHH-----HHHHHHH
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRNA-----WATYFAK 174 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~~~-----w~~~l~~ 174 (383)
-||| .++.+.+...+..+|+++.|+|+..+......++..++. ++| .++++||+|++...+... ..+++.+
T Consensus 72 tPG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~ 150 (195)
T cd01884 72 CPGH-ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSK 150 (195)
T ss_pred CcCH-HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3888 456777777889999999999998765544434333332 556 678999999975433222 2233444
Q ss_pred cC-----CeEEEeeCcCCCch
Q 016762 175 QG-----TKVIFSNGQLGMGT 190 (383)
Q Consensus 175 ~g-----~~vi~iSa~~g~Gi 190 (383)
.| ..++++|+.+|.++
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred hcccccCCeEEEeeCccccCC
Confidence 34 46899999998875
No 225
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.95 E-value=3.5e-05 Score=66.94 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||. ||| ..+.......+..+|++++|+|+..+..... ..+..++ .+.|+++++||+|+
T Consensus 49 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 49 NARLKFWDL--------GGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred CEEEEEEEC--------CCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 566777874 443 3444555577999999999999976532111 1222222 26899999999998
Q ss_pred CCHH---HHHHHHHHHH----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMA---DRNAWATYFA----KQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~---~~~~w~~~l~----~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.+.. +...+.+... ..+..++.+|+++|.|++++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 120 PDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 6543 2333322211 123468899999999998775443
No 226
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.94 E-value=2.4e-05 Score=68.68 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=36.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
.+|+++|.+|||||||+|++++.. ......+..+.+. ..+.++. .+.++||||.-
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 579999999999999999998643 2222223222222 2233332 57899999964
No 227
>PLN03127 Elongation factor Tu; Provisional
Probab=97.94 E-value=1.5e-05 Score=81.21 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=43.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC------Ccc---------ccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~------~~~---------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
..++|+++|.+|+|||||+|+|++. ... ..+...|+|.+...... +..+.++||||..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 4578999999999999999999732 111 12234899999765555 3468999999984
No 228
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.93 E-value=4.7e-05 Score=65.64 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=63.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-------cCCCeEEEEEcc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNRE 157 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-------~~k~~ilVlNK~ 157 (383)
+..+.+||. ||+ .+........+..+|.+++|+|+.++.+... ..+..++ .+.|+++|+||+
T Consensus 44 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~ 114 (162)
T cd04157 44 NLSFTAFDM--------SGQ-GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKM 114 (162)
T ss_pred CEEEEEEEC--------CCC-HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCc
Confidence 456678874 333 3334444567899999999999987643211 1233221 257999999999
Q ss_pred CCCCHHHHHHHHHHHH--H---cCCeEEEeeCcCCCchhhhhHHH
Q 016762 158 DMISMADRNAWATYFA--K---QGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 158 DL~~~~~~~~w~~~l~--~---~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
|+.+......+...+. . ....++.+|+++|.|++++.+.+
T Consensus 115 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 115 DLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred cccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 9975432222222221 1 11246789999999998886544
No 229
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.93 E-value=1.5e-05 Score=76.37 Aligned_cols=58 Identities=24% Similarity=0.407 Sum_probs=34.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccC-CCC------CceeEEE--EEEe-----CCcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRP------GVTRVLK--WVRF-----GKDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-~~p------gtT~~~~--~~~~-----~~~i~l~DTpG~i~ 274 (383)
.++|++||-+|+|||||||+|.+....... ..+ ..|..+. ...+ .-++.++|||||=.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 468999999999999999999986543332 111 1112222 2222 12477999999953
No 230
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.92 E-value=4.1e-05 Score=67.41 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=64.1
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (383)
.+..+.+||.. |+ .+........+..+|++++|+|+.++.+..+ ..+.+.+ .+.|+++|.||+|
T Consensus 51 ~~~~~~l~Dt~--------G~-~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 121 (168)
T cd04149 51 KNVKFNVWDVG--------GQ-DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQD 121 (168)
T ss_pred CCEEEEEEECC--------CC-HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcC
Confidence 35668888842 32 4444444567899999999999987643322 1232332 2479999999999
Q ss_pred CCC---HHHHHHHHHH--HHHcCCeEEEeeCcCCCchhhhhHH
Q 016762 159 MIS---MADRNAWATY--FAKQGTKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 159 L~~---~~~~~~w~~~--l~~~g~~vi~iSa~~g~Gi~~L~~~ 196 (383)
+.. .++...+.+. +.+....++.+||++|.|+.++.+.
T Consensus 122 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 122 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred CccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 863 3333333211 1111235678999999998876544
No 231
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.92 E-value=3.3e-05 Score=67.52 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=58.4
Q ss_pred HHHHHHhhhcCeEEEEEecCCCC-----CCC-c-----HHHHHH--------hcCCCeEEEEEccCCCCHHHHHHHH--H
Q 016762 112 KELKDQLKLMDVVIEVRDARIPL-----STT-H-----PLMDQW--------LGNRKRILVLNREDMISMADRNAWA--T 170 (383)
Q Consensus 112 ~~l~~~idr~DlILeV~DaR~p~-----~~~-~-----~~l~~~--------l~~k~~ilVlNK~DL~~~~~~~~w~--~ 170 (383)
..+...+..+|+|++|+|+..+. ... + .++... ..++|+++|+||+|+........|. .
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 145 (176)
T cd01881 66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE 145 (176)
T ss_pred HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH
Confidence 34456688899999999998763 111 1 011111 2368999999999998877665552 1
Q ss_pred HHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 171 YFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 171 ~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.....+..++.+|++.+.|+.++.+.+
T Consensus 146 ~~~~~~~~~~~~Sa~~~~gl~~l~~~l 172 (176)
T cd01881 146 LALEEGAEVVPISAKTEEGLDELIRAI 172 (176)
T ss_pred HhcCCCCCEEEEehhhhcCHHHHHHHH
Confidence 222234678999999999998876654
No 232
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.92 E-value=8.8e-06 Score=74.67 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=39.1
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccC-------CCCCceeE-EE--EEE---eCCcEEEEecCcccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV-LK--WVR---FGKDLEFLDSPGIIP 274 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-------~~pgtT~~-~~--~~~---~~~~i~l~DTpG~i~ 274 (383)
+...+||+||-++-|||||+|+|..++....+ +.|-||-- .. .+. +.-++.++|||||=.
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 35678999999999999999999876543322 23333321 11 111 112577999999964
No 233
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.92 E-value=7.3e-05 Score=74.93 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCC---CCCCc-HHH----HHH---hcCCCeEEEEEccCCCCHHHHHHHHHHHHH-cC-
Q 016762 110 TEKELKDQLKLMDVVIEVRDARIP---LSTTH-PLM----DQW---LGNRKRILVLNREDMISMADRNAWATYFAK-QG- 176 (383)
Q Consensus 110 ~~~~l~~~idr~DlILeV~DaR~p---~~~~~-~~l----~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~g- 176 (383)
+...+.+.++++|++++|+|+... ....+ ..+ ..+ +.++|.++|+||+|+............+.+ .+
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~ 306 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGW 306 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCC
Confidence 344555689999999999998622 11111 111 111 125899999999999876655444444433 23
Q ss_pred -CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 177 -TKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 177 -~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
..++++|++++.|+.+|.+.+.++.
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 3688999999999999877665554
No 234
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.92 E-value=1.8e-05 Score=69.71 Aligned_cols=102 Identities=13% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||. ||+ ..+.......++.+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+
T Consensus 57 ~~~l~l~D~--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (173)
T cd04154 57 GYKLNIWDV--------GGQ-KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL 127 (173)
T ss_pred CEEEEEEEC--------CCC-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccc
Confidence 456778884 332 3333444567899999999999987633222 2233332 36899999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
..........+.+. ..+..++.+|+++|.|+.++.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 128 PGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred ccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 75322222222221 223578899999999998875543
No 235
>PLN03110 Rab GTPase; Provisional
Probab=97.92 E-value=2.5e-05 Score=71.80 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=38.5
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+++|.+.. ......|....+ ...+.++. .+.|+||||-.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~-~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNE-FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4689999999999999999999754 232333333333 33344433 57789999964
No 236
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.91 E-value=4.7e-05 Score=66.32 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=65.2
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-----CCCeEEEEEcc
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-----NRKRILVLNRE 157 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~-----~k~~ilVlNK~ 157 (383)
+.+.+||. ||+ ..........++++|.+++++|+.++.+..+.. +..... +.|+++|+||+
T Consensus 49 ~~~~~~D~--------~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (172)
T cd01862 49 VTLQIWDT--------AGQ-ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKI 119 (172)
T ss_pred EEEEEEeC--------CCh-HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECc
Confidence 44556764 333 344444557789999999999998765432221 111122 57999999999
Q ss_pred CCCCHH--HHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHH
Q 016762 158 DMISMA--DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 158 DL~~~~--~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
|+..+. .......+.+..+ ..++.+|+++|.|+.++.+.+.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 164 (172)
T cd01862 120 DLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIAR 164 (172)
T ss_pred ccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 998321 1112222334444 67889999999999888766544
No 237
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.91 E-value=6.2e-05 Score=76.09 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=67.3
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CCCcHH-HHHH--hcCCCeEEEEEccCCCCHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPL-MDQW--LGNRKRILVLNREDMISMA 163 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-~~~~~~-l~~~--l~~k~~ilVlNK~DL~~~~ 163 (383)
..+.+||. ||| .++...+..-+..+|+++.|+|++.+. .....+ +..+ ...++.++|+||+|+.+.+
T Consensus 85 ~~i~liDt--------PG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 85 RRVSFVDA--------PGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred cEEEEEEC--------CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccch
Confidence 34556663 676 456666666677889999999999764 222222 2222 2235789999999998754
Q ss_pred HHH----HHHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 164 DRN----AWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 164 ~~~----~w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
... ...+.+.. .+..++++|+++|.|+.+|.+.+...
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 321 22222222 13578899999999999988777653
No 238
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=9.9e-05 Score=65.82 Aligned_cols=101 Identities=14% Similarity=0.077 Sum_probs=70.7
Q ss_pred CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc-----CCCeEEEEEccCCCCHHHHHHH--HHHH
Q 016762 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG-----NRKRILVLNREDMISMADRNAW--ATYF 172 (383)
Q Consensus 102 w~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w--~~~l 172 (383)
|....++++...+..+++.+++++.|+|..+..+..+.. |+.... +.-+++|.||.||+++++...- ...-
T Consensus 76 WDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA 155 (221)
T KOG0094|consen 76 WDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA 155 (221)
T ss_pred EecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHH
Confidence 444445999999999999999999999998766655432 344332 1235789999999998753221 1223
Q ss_pred HHcCCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (383)
Q Consensus 173 ~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~ 202 (383)
++.+..++.+|++.|.++++|-+.+.....
T Consensus 156 kel~a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 156 KELNAEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred HHhCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence 345667778999999999988666555443
No 239
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.91 E-value=4.9e-05 Score=65.61 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMI 160 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~ 160 (383)
...++.+||. ||+ .+........+..+|.++.|+|+.++.+..... +.....+.|+++|.||+|+.
T Consensus 49 ~~~~~~i~D~--------~G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 49 EDVRLMLWDT--------AGQ-EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred CEEEEEEeeC--------Cch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 3456778884 343 444555557789999999999987665432211 11112378999999999997
Q ss_pred CHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 161 ~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
..... .......+..+.+++.+|++.|.|+.++.+.+
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 54321 12223344557788999999999988876554
No 240
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.91 E-value=7.9e-05 Score=66.88 Aligned_cols=105 Identities=11% Similarity=0.112 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-~~k~~ilVlNK~DL~ 160 (383)
...+.+||. ||+ .+........+..+|+++.|||+..+.+..+. ++.... .+.|+++|+||+|+.
T Consensus 49 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 49 KVKLQIWDT--------AGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEEEEeC--------CCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 456677774 332 33444445678899999999999765432211 111212 257899999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.... ...........+..++.+|++.|.|+.++.+.+.+.
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 120 GERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred hccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 4321 122222233456788999999999999886665543
No 241
>PRK00049 elongation factor Tu; Reviewed
Probab=97.90 E-value=2e-05 Score=79.29 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=43.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC------ccc---------cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~------~~~---------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
..++|+++|.+|+|||||+++|++.. ... -+...|+|.+...... +..+.++||||..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 45789999999999999999998621 101 1125799999765555 4468999999973
No 242
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.90 E-value=2.2e-05 Score=68.40 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=35.1
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||++++...... ...|.+..+...+.. .-.+.+.||||.-
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~~~~~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcceEEEEECCEEEEEEECCCCH
Confidence 6999999999999999999644322 223322222222333 3357899999973
No 243
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.90 E-value=2.4e-05 Score=69.95 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=36.1
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..+|.++|.+|||||||++++.........++.|. +...+.. +-.+.++||||.-
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~--~~~~~~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGF--NVETVEYKNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCcccc--ceEEEEECCEEEEEEECCCCH
Confidence 36899999999999999999964432222222222 2222233 3357899999973
No 244
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.90 E-value=2.8e-05 Score=68.20 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=34.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++..... ....+..+.......+..+ -.+.++||||.-
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCCh
Confidence 699999999999999999985431 1122222222222212222 257899999974
No 245
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.90 E-value=1.3e-05 Score=85.96 Aligned_cols=57 Identities=26% Similarity=0.480 Sum_probs=43.1
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-----CCcEEEEecCcc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-----GKDLEFLDSPGI 272 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-----~~~i~l~DTpG~ 272 (383)
.+++.|+++|++|+|||||+|+|++.. ...+..+|+|.++..+. . +..+.++||||.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence 456789999999999999999998654 34455678887753222 1 246899999996
No 246
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.90 E-value=2.4e-05 Score=69.63 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=34.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeC--C--cEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG--K--DLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~--~--~i~l~DTpG~ 272 (383)
++|+++|.+|||||||+|++.+.. ......|.+..+. ..+... . .+.+.||||.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 59 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK-FPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ 59 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc
Confidence 379999999999999999999754 2222222222221 122222 2 4678999995
No 247
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.89 E-value=1.5e-05 Score=83.82 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=27.5
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-ceeE
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRV 254 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-tT~~ 254 (383)
++.|+++|.+|+|||||+|+|++... +...+| +|++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~ 40 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQH 40 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecc
Confidence 45699999999999999999997642 334444 6664
No 248
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.88 E-value=1.3e-05 Score=76.22 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+|+++|.+|+|||||+|+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999753
No 249
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.88 E-value=3.8e-05 Score=68.53 Aligned_cols=103 Identities=12% Similarity=0.083 Sum_probs=63.2
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (383)
.+..+.+||. ||+ +++.......++.+|++++|+|+.++.+... ..+..+. .++|+++|+||+|
T Consensus 50 ~~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D 120 (183)
T cd04152 50 KGITFHFWDV--------GGQ-EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQD 120 (183)
T ss_pred CceEEEEEEC--------CCc-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcC
Confidence 4566778884 232 4444444466899999999999876532211 1222221 2689999999999
Q ss_pred CCCH---HHHHHHHHHHHHc----CCeEEEeeCcCCCchhhhhHHHH
Q 016762 159 MISM---ADRNAWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 159 L~~~---~~~~~w~~~l~~~----g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+... ++...+... ... +..++++|+++|.|++++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~ 166 (183)
T cd04152 121 LPNALSVSEVEKLLAL-HELSASTPWHVQPACAIIGEGLQEGLEKLY 166 (183)
T ss_pred ccccCCHHHHHHHhCc-cccCCCCceEEEEeecccCCCHHHHHHHHH
Confidence 8642 222222111 111 13467899999999988865543
No 250
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.88 E-value=4.2e-05 Score=65.06 Aligned_cols=91 Identities=7% Similarity=-0.018 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHH-----Hc
Q 016762 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQ 175 (383)
Q Consensus 108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~l~-----~~ 175 (383)
..........+..+|.+++|+|+..+..... ..+..+. .++|+++|+||+|+.+......+...+. ..
T Consensus 55 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 134 (159)
T cd04159 55 PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDR 134 (159)
T ss_pred HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCC
Confidence 4445555677899999999999976433211 1222222 2579999999999976544333333321 12
Q ss_pred CCeEEEeeCcCCCchhhhhHHHH
Q 016762 176 GTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 176 g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
...++.+|+++|.|+.++.+.+.
T Consensus 135 ~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 135 EVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred ceEEEEEEeccCCChHHHHHHHh
Confidence 24678899999999988866554
No 251
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.88 E-value=2.6e-05 Score=67.88 Aligned_cols=103 Identities=11% Similarity=0.099 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHhc-----CCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l~-----~k~~ilVlNK~D 158 (383)
.+..+.+||.. |+ .+........+..+|++++|+|+.++.+.. ...+..++. +.|++++.||+|
T Consensus 42 ~~~~~~l~D~~--------G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 112 (159)
T cd04150 42 KNISFTVWDVG--------GQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQD 112 (159)
T ss_pred CCEEEEEEECC--------CC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCC
Confidence 35667788853 22 344445557789999999999997643221 122333322 479999999999
Q ss_pred CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762 159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
|.......+..+.+. ..+..++.+|+++|.|+.++.+.+
T Consensus 113 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 113 LPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred CCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 964321112112221 112245678999999998875543
No 252
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.88 E-value=2.1e-05 Score=68.44 Aligned_cols=54 Identities=30% Similarity=0.425 Sum_probs=36.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i~ 274 (383)
+|+++|.+|||||||++++.... ..+..+.++... ..+.++. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 48999999999999999998643 234444444222 2223332 367999999864
No 253
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.87 E-value=2.7e-05 Score=70.50 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=35.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC--C--cEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG--K--DLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~--~--~i~l~DTpG~ 272 (383)
+|+++|.+|||||||+|++.+.. ......|....+. ..+.++ . .+.+.||||-
T Consensus 2 KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc
Confidence 69999999999999999999653 2222233333332 233333 2 3679999996
No 254
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.87 E-value=2.8e-05 Score=68.65 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.2
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
.++|+++|.+|||||||+|++.+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998653
No 255
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.87 E-value=9.6e-05 Score=65.61 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=52.7
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH----HHHHHHHHHHcC--CeEEEeeCcCCCch
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD----RNAWATYFAKQG--TKVIFSNGQLGMGT 190 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~----~~~w~~~l~~~g--~~vi~iSa~~g~Gi 190 (383)
+.+|.+++|+|++.+....+.++..++. ++|+++++||+|+.+..+ ...+.+.+...+ ..++++|+++|.|+
T Consensus 99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 99 ENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred hhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 3568999999998877766655544443 689999999999986543 334444555444 37899999999986
No 256
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.86 E-value=0.00038 Score=62.21 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCCcCCCchHH-HHHHHHHHHHh---hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHI-AKTEKELKDQL---KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~-~~~~~~l~~~i---dr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~ 161 (383)
.++.+||..-....-.+..+ ++....+...+ +.++++++|+|+..+......++..++. +.|+++++||+|+.+
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 56788886542211112222 23333333333 4567899999988776655544444443 678999999999987
Q ss_pred HHHHHH----HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 162 MADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 162 ~~~~~~----w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
..+... ....+......++++|++.|.|+.++.+.+.++.
T Consensus 150 ~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 150 KGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 654433 2233333356788999999999999988776654
No 257
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.86 E-value=8.5e-05 Score=64.16 Aligned_cols=102 Identities=16% Similarity=-0.029 Sum_probs=64.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~DL 159 (383)
...+.+||.. |+ .++.......+..+|.++.|+|+.++.+..... +..+. .+.|+++|+||+|+
T Consensus 49 ~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl 119 (164)
T cd04145 49 WAILDILDTA--------GQ-EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119 (164)
T ss_pred EEEEEEEECC--------CC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccc
Confidence 3456677743 32 344445557788999999999998754332211 11111 25799999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
..... ...-.+.....+..++.+|++.|.|+.++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 120 EHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred cccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 75421 111122333456778999999999998875544
No 258
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.85 E-value=6.9e-05 Score=68.22 Aligned_cols=104 Identities=11% Similarity=-0.034 Sum_probs=66.7
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDM 159 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL 159 (383)
.....+-+||.... .++.......+..+|+++.|+|..++.+..+.. +.+...+.|+++|.||+||
T Consensus 41 ~~~~~l~iwDt~G~---------e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl 111 (200)
T smart00176 41 RGPIRFNVWDTAGQ---------EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred CEEEEEEEEECCCc---------hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 34567788885332 334444446789999999999998765443221 2222236799999999998
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
........-.......+..++.+|++.|.|+.++-+.+
T Consensus 112 ~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l 149 (200)
T smart00176 112 KDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred ccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 54321111112233456788999999999998775443
No 259
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.85 E-value=2.8e-05 Score=71.30 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=36.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe--CC--cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GK--DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~--~~--~i~l~DTpG~i 273 (383)
.+|+++|.+|||||||+|+|++.+.... ..|.++.+.. .+.+ +. .+.+.||||--
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 5799999999999999999997653222 2243333432 2222 22 46799999953
No 260
>PTZ00369 Ras-like protein; Provisional
Probab=97.85 E-value=2.3e-05 Score=70.32 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=35.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|++.+.... ...+..+.+.. ..+.++. .+.++||||.-
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCc
Confidence 468999999999999999999865421 11111222211 1122332 35689999974
No 261
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.85 E-value=6.2e-05 Score=66.40 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL 159 (383)
...+.+||. ||+ .+........++.+|.++.|+|..++.+..+.. +.... .+.|+++|.||+|+
T Consensus 62 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 132 (180)
T cd04127 62 RIHLQLWDT--------AGQ-ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred EEEEEEEeC--------CCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence 355678885 333 455555567789999999999998654433321 11111 25689999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+... .....+...+.+..++.+|++.|.|++++.+.+.+
T Consensus 133 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 133 EDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred hhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 65321 11222233345677899999999999988665543
No 262
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.84 E-value=0.00013 Score=65.95 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEE
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLN 155 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-----~~k~~ilVlN 155 (383)
..+.+.+||.. |+ .++.......+..+|.++.|+|...+.+.... ++.... .+.|+++|.|
T Consensus 48 ~~~~l~l~Dt~--------G~-~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N 118 (201)
T cd04107 48 TVVRLQLWDIA--------GQ-ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN 118 (201)
T ss_pred CEEEEEEEECC--------Cc-hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence 34567788743 22 33444445678999999999998876554332 122221 2568999999
Q ss_pred ccCCCCHH--HHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762 156 REDMISMA--DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 156 K~DL~~~~--~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
|+||.+.. ......++.+..+ ..++.+|+++|.|+.++.+.+.
T Consensus 119 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 119 KCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred CCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 99996311 1122223344455 5788999999999988755544
No 263
>PRK12739 elongation factor G; Reviewed
Probab=97.84 E-value=2.4e-05 Score=84.08 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=41.5
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCc-----cccC------------CCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~------------~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
..+|+|+|.+|+|||||+|+|+.... ..+. ...|+|.+.....+ +..+.++||||+..
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 34799999999999999999964211 1122 25688888643333 55789999999863
No 264
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.83 E-value=9.6e-05 Score=67.50 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C-CCeEEEEEccCCCCH--HHH----HHHHHHHHH
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISM--ADR----NAWATYFAK 174 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~-k~~ilVlNK~DL~~~--~~~----~~w~~~l~~ 174 (383)
||| .++...+...+..+|+++.|+|+..+..........+.. + +++++|+||+|+... +.. ....+.+..
T Consensus 85 pG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~ 163 (208)
T cd04166 85 PGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAK 163 (208)
T ss_pred CcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHH
Confidence 666 445555666789999999999998765443333222221 3 456778999999742 111 122222334
Q ss_pred cC---CeEEEeeCcCCCchhhh
Q 016762 175 QG---TKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 175 ~g---~~vi~iSa~~g~Gi~~L 193 (383)
.+ ..++++|+++|.|+.+.
T Consensus 164 ~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 164 LGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cCCCCceEEEEeCCCCCCCccC
Confidence 44 34889999999987643
No 265
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.82 E-value=0.00011 Score=64.14 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE 157 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~ 157 (383)
..+.+.+||.. |+ .+........++.+|.++.|+|..++.+... +..++ .+.|+++|.||+
T Consensus 49 ~~~~l~i~Dt~--------G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iiiv~nK~ 117 (166)
T cd04122 49 QKIKLQIWDTA--------GQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKA 117 (166)
T ss_pred EEEEEEEEECC--------Cc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECc
Confidence 34567888842 32 4444555667899999999999987654332 22222 246899999999
Q ss_pred CCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762 158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (383)
Q Consensus 158 DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~ 194 (383)
|+...... ..-.+...+.+..++.+|+++|.|+.++.
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 118 DLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred ccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99654221 11112233456788899999999998863
No 266
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.82 E-value=7.4e-05 Score=64.96 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=52.3
Q ss_pred hcCeEEEEEecCCCCCCC-cH--HHHHH----hcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh
Q 016762 120 LMDVVIEVRDARIPLSTT-HP--LMDQW----LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (383)
Q Consensus 120 r~DlILeV~DaR~p~~~~-~~--~l~~~----l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~ 192 (383)
.+|++++|+|+..+.+.. .. ++... ..+.|+++|+||+|+..........++....+..++.+|+++|.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 368999999998765421 11 11111 226899999999999876544332222222346788999999999998
Q ss_pred hhHHHH
Q 016762 193 LSRLAK 198 (383)
Q Consensus 193 L~~~l~ 198 (383)
+.+.+.
T Consensus 159 l~~~l~ 164 (168)
T cd01897 159 VKNKAC 164 (168)
T ss_pred HHHHHH
Confidence 866543
No 267
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.82 E-value=3.8e-05 Score=67.70 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=35.8
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC---CcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~i~l~DTpG~i 273 (383)
+|++||.+|||||||+|++.+.. ....-.|.+..+.. .+.++ ..+.+.||||.-
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 58999999999999999999753 22222233333332 22232 257899999974
No 268
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.81 E-value=8.7e-05 Score=65.51 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=63.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||..- | ..+.......++.+|++++|+|+..+.+.. ...+..++ .+.|+++++||+|+
T Consensus 58 ~~~~~l~D~~G---~------~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 58 NIRFLMWDIGG---Q------ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred CeEEEEEECCC---C------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 56678888432 2 334444456789999999999987654322 12233333 24799999999998
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
..........+.+. ..+..++.+|+++|.|+.++.+.+
T Consensus 129 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 129 KGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 64211122212221 123457889999999988775443
No 269
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.81 E-value=6.5e-05 Score=67.73 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMI 160 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~ 160 (383)
....+-+||..- +.+........+..+|.+|+|||..++.+..+.. +.....+.|+++|.||+||.
T Consensus 53 ~~~~l~iwDt~G---------~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 53 RRVKLQLWDTSG---------QGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred EEEEEEEEeCCC---------cHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 345566777432 2445555556789999999999998776554432 22222367999999999996
Q ss_pred C-----HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 161 S-----MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 161 ~-----~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
. .++.+.| .++.+..++.+|++.|.|++++-+.+
T Consensus 124 ~~~~v~~~~~~~~---a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 124 FKRQVATEQAQAY---AERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred hccCCCHHHHHHH---HHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 4 2233333 34567789999999999998874444
No 270
>PLN03108 Rab family protein; Provisional
Probab=97.81 E-value=5.1e-05 Score=69.39 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=37.6
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..+|+++|.+|||||||+|+|++...... .+..|.+.....+.++. .+.++||+|-.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 36899999999999999999997542221 12233333333334432 46799999964
No 271
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.81 E-value=3.2e-05 Score=81.45 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=27.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCC-CceeE
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRV 254 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-gtT~~ 254 (383)
+++.|+++|.+|+|||||+|+|++.. .++..+ +.|.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ 42 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQH 42 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEe
Confidence 45679999999999999999998764 233344 35554
No 272
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.81 E-value=4.3e-05 Score=67.66 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=37.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
.++|.++|.+|||||||++++..... ....|.+..+...+.. ...+.++||||.-
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccceEEEEECCEEEEEEECCCCh
Confidence 46899999999999999999964332 2333433333333333 3357899999974
No 273
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.81 E-value=8.6e-05 Score=63.96 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+.++.+||.. |+ .+........+..+|+++.|+|+..+.+... ..+..+. .+.|+++++||+|+
T Consensus 42 ~~~~~i~D~~--------G~-~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWDVG--------GQ-DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDL 112 (158)
T ss_pred CEEEEEEECC--------CC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCC
Confidence 4667888843 33 2333444567899999999999987632222 1222222 26799999999999
Q ss_pred CCHH---HHHHHHHHH--HHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMA---DRNAWATYF--AKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~---~~~~w~~~l--~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.... +...+.... ......++.+|++.|.|+.++.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 113 PGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred ccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 8644 222222111 1122468889999999998875443
No 274
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.81 E-value=9.7e-05 Score=68.08 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----CCc---HHH---HHHhcCCCeEEEEEccCCCC----HHHHHH--
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----TTH---PLM---DQWLGNRKRILVLNREDMIS----MADRNA-- 167 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~----~~~---~~l---~~~l~~k~~ilVlNK~DL~~----~~~~~~-- 167 (383)
||| .++...+...+..+|++++|+|+..+.. ... ... ......+|+++++||+|+.. ......
T Consensus 85 pG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~ 163 (219)
T cd01883 85 PGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIK 163 (219)
T ss_pred CCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHH
Confidence 676 4555666667888999999999987421 111 111 11122467888999999983 222222
Q ss_pred --HHHHHHHcC-----CeEEEeeCcCCCchh
Q 016762 168 --WATYFAKQG-----TKVIFSNGQLGMGTM 191 (383)
Q Consensus 168 --w~~~l~~~g-----~~vi~iSa~~g~Gi~ 191 (383)
....+...+ ..++++|+++|.|+.
T Consensus 164 ~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 164 KELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 222344443 458999999999975
No 275
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.81 E-value=1.5e-05 Score=69.68 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=53.0
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCcCCCchhhhhH
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~ 195 (383)
++.|+|+.|+|+... .++..+... + .++|.++|+||+|++.+....-..+.+ +..|.+++++|+++|.|+++|++
T Consensus 77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence 789999999999852 333333222 2 389999999999998765321111222 23588999999999999998876
Q ss_pred H
Q 016762 196 L 196 (383)
Q Consensus 196 ~ 196 (383)
.
T Consensus 155 ~ 155 (156)
T PF02421_consen 155 A 155 (156)
T ss_dssp H
T ss_pred h
Confidence 4
No 276
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.80 E-value=0.00012 Score=64.01 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~D 158 (383)
...+.+||. ||+ .+........++.+|.++.++|+.++.+..+ +..++ .+.|+++|.||+|
T Consensus 51 ~~~l~l~D~--------~g~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D 119 (167)
T cd01867 51 KIKLQIWDT--------AGQ-ERFRTITTAYYRGAMGIILVYDITDEKSFEN--IRNWMRNIEEHASEDVERMLVGNKCD 119 (167)
T ss_pred EEEEEEEeC--------Cch-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHh--HHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 345667774 333 4445555577899999999999876544222 22222 2468999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+..... .+...+.....+..++.+|++.|.|+.++.+.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 120 MEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 974321 122223344556788999999999998875443
No 277
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.80 E-value=0.00013 Score=66.64 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=66.9
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l-~~k~~ilVlNK~ 157 (383)
.+...++.+||...+ .++......+++.+|.++.|||..++.+..+.. +.+.. .+.|+++|.||+
T Consensus 45 ~~~~v~l~iwDtaGq---------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~ 115 (202)
T cd04120 45 RGKKIRLQIWDTAGQ---------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 115 (202)
T ss_pred CCEEEEEEEEeCCCc---------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 344577888885322 444555557899999999999998766554321 11111 257899999999
Q ss_pred CCCCHHHHH-HHHHHH-HHc-CCeEEEeeCcCCCchhhhhHH
Q 016762 158 DMISMADRN-AWATYF-AKQ-GTKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 158 DL~~~~~~~-~w~~~l-~~~-g~~vi~iSa~~g~Gi~~L~~~ 196 (383)
||....++. .-...+ .+. +..++.+||++|.|+.++-+.
T Consensus 116 DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~ 157 (202)
T cd04120 116 DCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 157 (202)
T ss_pred ccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 996433211 111222 232 567889999999999887443
No 278
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.80 E-value=3.8e-05 Score=77.17 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=42.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC------Cccc---------cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~------~~~~---------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
..++|+++|..|+|||||+++|++. .... .+...|+|.+...+.. +..+.++||||.-
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3578999999999999999999832 1111 1124799999866555 3458999999974
No 279
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.79 E-value=0.00018 Score=64.01 Aligned_cols=104 Identities=13% Similarity=0.021 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH-HH---hcCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD-QW---LGNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~-~~---l~~k~~ilVlNK~DL~ 160 (383)
.+++.+||... | .+........++.+|+|++|+|..++.+..+.. +. .. ..+.|+++|.||+||.
T Consensus 48 ~~~l~i~Dt~G---~------~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 48 IIELALWDTAG---Q------EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred EEEEEEEECCC---c------hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 45677888432 2 333333335689999999999998765443321 11 11 1367999999999996
Q ss_pred CHH------HHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMA------DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~------~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.. ....-.+.....+. .++.+|+++|.|+.++.+.+.+
T Consensus 119 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 164 (187)
T cd04132 119 KDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIE 164 (187)
T ss_pred hCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHH
Confidence 532 01111122234455 7889999999999987555443
No 280
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.79 E-value=3.9e-05 Score=69.33 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=35.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++.+... ......++.+.. .+.++. .+.++||||..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 489999999999999999987542 222333333221 223332 57799999974
No 281
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.79 E-value=9.9e-05 Score=63.65 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDM 159 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL 159 (383)
..+.+||. ||+ .+........+..+|+++.+||..++.+... +..++ .+.|+++|.||+|+
T Consensus 49 ~~~~l~D~--------~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 49 VKLQIWDT--------AGQ-ERFRSITSSYYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEEEC--------CCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 45667774 333 4455555677899999999999987654422 22221 25799999999998
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
..... .+...+..++.+..++.+|++.|.|+.++.+.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 118 EDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 75321 12222233445778899999999999888665543
No 282
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.79 E-value=4.6e-05 Score=66.77 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=33.6
Q ss_pred EeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i 273 (383)
|+++|.+|||||||+|++.+.. ......|...... ..+.++. .+.++||||--
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence 5799999999999999999754 2222223222111 1223332 36799999964
No 283
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.78 E-value=0.00017 Score=67.22 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=67.5
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~ 157 (383)
....+++.+||...+ ..+.......+..+|++++|+|..++.+..+. ++.+...+.|+++|.||+
T Consensus 57 ~~~~v~l~iwDTaG~---------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~ 127 (232)
T cd04174 57 EEQRVELSLWDTSGS---------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKT 127 (232)
T ss_pred CCEEEEEEEEeCCCc---------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 445577889986432 34444444678999999999999877655432 122222367899999999
Q ss_pred CCCCH------------H--HHHHHHHHHHHcCC-eEEEeeCcCCC-chhhhhHHH
Q 016762 158 DMISM------------A--DRNAWATYFAKQGT-KVIFSNGQLGM-GTMKLSRLA 197 (383)
Q Consensus 158 DL~~~------------~--~~~~w~~~l~~~g~-~vi~iSa~~g~-Gi~~L~~~l 197 (383)
||... . ...+..++..+.|. .++.+|+++|. |+.++-..+
T Consensus 128 DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~ 183 (232)
T cd04174 128 DLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSA 183 (232)
T ss_pred ccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHH
Confidence 98531 0 11222233345565 57889999997 788875443
No 284
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.78 E-value=9.7e-05 Score=66.85 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---hcCCCeEEEEEccCCCCH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---LGNRKRILVLNREDMISM 162 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l~~k~~ilVlNK~DL~~~ 162 (383)
..+.+||. ||+ .+........++.+|.+++|+|+.++.+..... +..+ ....|+++|.||+|+.+.
T Consensus 55 ~~l~l~D~--------~G~-~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 55 VKLQIWDT--------AGQ-ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred EEEEEEeC--------CCc-hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 45667773 332 334444456788999999999998764432211 1111 125789999999999754
Q ss_pred HH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 163 AD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 163 ~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.. .....+.....+..++.+|+++|.|+.++.+.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 126 KVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred cccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 32 12222333455678899999999999988665543
No 285
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.77 E-value=8.9e-05 Score=64.02 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=66.0
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh------cCCCeEEE
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL------GNRKRILV 153 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l------~~k~~ilV 153 (383)
.....+.+||.... .+........+..+|++++|+|..++.+.... ++.... .+.|+++|
T Consensus 46 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04119 46 NKEVRVNFFDLSGH---------PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVC 116 (168)
T ss_pred CeEEEEEEEECCcc---------HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEE
Confidence 34566778874332 33344445678999999999999876432211 122222 24689999
Q ss_pred EEccCCCCHH--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 154 LNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 154 lNK~DL~~~~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.||+|+.+.. ..........+.+..++.+|+++|.|+.++.+.+
T Consensus 117 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 117 ANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred EEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999997322 1222222334456778999999999998886554
No 286
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.77 E-value=0.00015 Score=64.76 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=64.5
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---cCCCeEEEEEccCC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---GNRKRILVLNREDM 159 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l---~~k~~ilVlNK~DL 159 (383)
+....+.+||.... .++.......++.+|+++.|+|..++.+..+. .+..+. .....++|.||+||
T Consensus 46 ~~~~~l~iwDt~G~---------~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl 116 (182)
T cd04128 46 GTEITFSIWDLGGQ---------REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDL 116 (182)
T ss_pred CEEEEEEEEeCCCc---------hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 34467888885433 23333344578999999999998776554331 122222 12334789999999
Q ss_pred CC----HH--HHHHHHH-HHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 160 IS----MA--DRNAWAT-YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 160 ~~----~~--~~~~w~~-~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.. .+ ....... +.+..+..++++|+++|.|+.++.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~ 162 (182)
T cd04128 117 FADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVL 162 (182)
T ss_pred cccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 52 11 1112222 2234466788999999999998866543
No 287
>PRK12736 elongation factor Tu; Reviewed
Probab=97.77 E-value=3.5e-05 Score=77.47 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=42.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC------ccc---------cCCCCCceeEEEEEEe---CCcEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~------~~~---------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~ 272 (383)
..++|+++|.+|+|||||+++|++.. ... .+...|+|.+...... +..+.++||||.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 45789999999999999999998621 111 1125799999765555 346899999995
No 288
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.77 E-value=2.5e-05 Score=83.16 Aligned_cols=27 Identities=37% Similarity=0.378 Sum_probs=23.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~ 242 (383)
..++|+++|.+|+|||||+|+|+....
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~ 49 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK 49 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC
Confidence 357899999999999999999986543
No 289
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.77 E-value=0.00012 Score=64.53 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHhc-----CCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWLG-----NRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l~-----~k~~ilVlNK~DL 159 (383)
...+.+||.. |+ .+........+..+|+++.|+|+.++.+.... . +..++. ..|+++|.||+|+
T Consensus 48 ~~~l~i~Dt~--------G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 48 PFSLQLWDTA--------GQ-ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEEeCC--------Ch-HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 4556777743 22 44444445678999999999999764333221 1 222221 2358999999999
Q ss_pred CCHHHH---H-HHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 160 ISMADR---N-AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 160 ~~~~~~---~-~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
.+.... . .-.....+.+..++.+|++.|.|+.++.+.+.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 119 SSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred CccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 754321 1 11122234466788999999999998877665544
No 290
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.76 E-value=4.4e-05 Score=70.49 Aligned_cols=55 Identities=22% Similarity=0.168 Sum_probs=34.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCcc-c-cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMC-P-AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~-~-v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++++.... . ..+..+.+.....+.+ ...+.++||||.-
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 6999999999999999999754321 1 1111111112222333 2357899999985
No 291
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.76 E-value=5e-05 Score=62.32 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=36.2
Q ss_pred EEeEeecCCCChhHHHHhhhcCCcc---ccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~---~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
||.++|.+|||||||+++|.+.... ......+.|........ ...+.+.|++|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 62 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE 62 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce
Confidence 5899999999999999999976643 12233344444333332 12367899999853
No 292
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.76 E-value=6.1e-05 Score=66.67 Aligned_cols=104 Identities=10% Similarity=0.042 Sum_probs=63.1
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~D 158 (383)
.+..+.+||..-. .+........++.+|.+++|+|+.++.+.. ...+..++ .+.|+++|.||+|
T Consensus 55 ~~~~l~l~D~~G~---------~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 125 (175)
T smart00177 55 KNISFTVWDVGGQ---------DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQD 125 (175)
T ss_pred CCEEEEEEECCCC---------hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcC
Confidence 3466788885322 344444556789999999999987654322 22233332 2468999999999
Q ss_pred CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
|.......+..+.+. .....++.+|+++|.|+.++.+.+.
T Consensus 126 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 126 LPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred cccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 964321112112111 1112355699999999988765543
No 293
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.76 E-value=6.5e-05 Score=65.88 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=33.6
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC-C--cEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~--~i~l~DTpG~ 272 (383)
+|+++|.+|||||||++++.+... ......++.+. ..+.++ . .+.++||||.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 59 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence 699999999999999999996532 12222222111 122332 2 4679999996
No 294
>PLN03126 Elongation factor Tu; Provisional
Probab=97.76 E-value=4.5e-05 Score=78.39 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=42.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc---------------ccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
..++|+++|.+|+|||||+|+|++.... .-....|+|.+.....+ +..+.++||||..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 4678999999999999999999852111 11334688888654443 4578999999964
No 295
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.76 E-value=0.00022 Score=72.04 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHHhcCCCeEEEEEccCCCCHH--HH----HHHHHHHHH
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMISMA--DR----NAWATYFAK 174 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~---l~~~l~~k~~ilVlNK~DL~~~~--~~----~~w~~~l~~ 174 (383)
||| .++.+.+...+..+|+++.|+|+..+......+ +...++.++.++++||+|+.+.. .. ......+.+
T Consensus 88 PGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~ 166 (406)
T TIGR02034 88 PGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQ 166 (406)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHH
Confidence 787 556666777789999999999998776554433 22333445678899999998522 11 122222333
Q ss_pred cC---CeEEEeeCcCCCchhh
Q 016762 175 QG---TKVIFSNGQLGMGTMK 192 (383)
Q Consensus 175 ~g---~~vi~iSa~~g~Gi~~ 192 (383)
.+ ..++++|+.+|.|+.+
T Consensus 167 ~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 167 LGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cCCCCccEEEeecccCCCCcc
Confidence 34 3588999999999875
No 296
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.76 E-value=2.8e-05 Score=66.67 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=32.7
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i 273 (383)
||++||-+++|||||+++|.+... ...-|..+++ ..+ .+||||=.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~---~~~--~IDTPGEy 47 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY---YDN--TIDTPGEY 47 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe---ccc--EEECChhh
Confidence 699999999999999999997542 2234444443 334 39999964
No 297
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.75 E-value=6.9e-05 Score=65.24 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=35.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
+|+++|.+|||||||++++.+.. ......|....+. ..+.++. .+.+.||+|--
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 68999999999999999998654 2222233333222 2333332 46789999963
No 298
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.74 E-value=0.00013 Score=63.51 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~D 158 (383)
...+.+||. ||+ .+........++.+|.++.|+|..++.+.. ++..++ .+.|+++|.||+|
T Consensus 49 ~~~~~l~Dt--------~g~-~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 49 RVKLQIWDT--------AGQ-ERYRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEEEEC--------CCh-HHHHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence 355778874 232 334444456789999999999987653322 122221 2568999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
|.+... ...-.+.....+..++.+|+++|.|+.++.+.+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 118 MEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred cCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 975432 1111222334567789999999999988755543
No 299
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.73 E-value=5.4e-05 Score=70.02 Aligned_cols=54 Identities=24% Similarity=0.393 Sum_probs=35.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|++.+..... ..|-+..+...... ..++.++||||.-
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e 55 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYLKQWGPYNISIWDTAGRE 55 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEEEEeeEEEEEEEeCCCcc
Confidence 368999999999999999999765322 22222122222222 2357899999974
No 300
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.73 E-value=0.0002 Score=75.71 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCC-
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMAD---RNAWATYFAKQGT- 177 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~~---~~~w~~~l~~~g~- 177 (383)
||| ..+..+....+..+|.+|.|+|+..+....... +..+. .+.|+++|+||+|+..... ...+.+. .+.
T Consensus 82 PGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~---lg~~ 157 (600)
T PRK05433 82 PGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDV---IGID 157 (600)
T ss_pred CCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHH---hCCC
Confidence 676 556677778899999999999998765433322 22222 3789999999999964321 1222222 232
Q ss_pred --eEEEeeCcCCCchhhhhHHHHHh
Q 016762 178 --KVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 178 --~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.++++|+++|.|+.+|.+.+.+.
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~ 182 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVER 182 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHh
Confidence 48899999999999887776544
No 301
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.73 E-value=4.6e-05 Score=70.63 Aligned_cols=57 Identities=28% Similarity=0.438 Sum_probs=39.0
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i 273 (383)
..+..|+++|.||+|||||+|+|.+.. ...++...|+. .+ ....+..+.++||||.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH
Confidence 445679999999999999999998752 22333444531 11 11235678999999965
No 302
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.73 E-value=6.1e-05 Score=68.66 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=36.3
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-----CCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-----~~~i~l~DTpG~i 273 (383)
+|.++|.+|||||||+|.|.+... ....+.++-....... +..+.|+||||..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~--~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY--RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--CCccCcEeecceEEEeecCCCCceEEEEECCCCH
Confidence 589999999999999999997542 2222333333332222 3568899999975
No 303
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.72 E-value=0.00011 Score=63.93 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH---Hh-cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ---WL-GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~---~l-~~k~~ilVlNK~DL~ 160 (383)
...+.+||. ||+ .+........+..+|.+++|+|+.++.+..+.. +.. +. .+.|+++|.||+|+.
T Consensus 50 ~~~~~i~D~--------~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 50 TIKLQIWDT--------AGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEEEEC--------CCc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 345566763 333 344555556789999999999997654332211 111 11 257999999999986
Q ss_pred CHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 161 ~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
..... +.-.......+..++.+|+++|.|+.++.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 121 DKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 54221 11112223456788999999999998875544
No 304
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.71 E-value=9.6e-05 Score=64.55 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHH----HhcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~----~l~~k~~ilVlNK~DL 159 (383)
.+.++.+||.... ......+...+..+|+++.|+|..++.+..+. .+.. ...+.|+++|.||+|+
T Consensus 45 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl 115 (166)
T cd01893 45 ERVPTTIVDTSSR---------PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL 115 (166)
T ss_pred CeEEEEEEeCCCc---------hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 4566778885322 22233445567899999999998876554431 1211 1236899999999999
Q ss_pred CCHHHH---HHHHHHH-HHc-C-CeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMADR---NAWATYF-AKQ-G-TKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~~---~~w~~~l-~~~-g-~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+.... ......+ .+. + ..++.+|+++|.|++++.+.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 116 RDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred ccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHH
Confidence 764431 1211111 111 1 36888999999999888665543
No 305
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.71 E-value=0.0001 Score=63.24 Aligned_cols=87 Identities=10% Similarity=-0.030 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHH-HHHHHHHHHHcCCeEEEe
Q 016762 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFS 182 (383)
Q Consensus 111 ~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~~~-~~~w~~~l~~~g~~vi~i 182 (383)
.......+..+|.++.|+|..+..+..+. ++.+.. .+.|+++|.||+|+..... ...........+..++.+
T Consensus 63 ~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 142 (162)
T cd04138 63 SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIET 142 (162)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEe
Confidence 33444678899999999998764332221 122221 2679999999999975321 122223334456788999
Q ss_pred eCcCCCchhhhhHHH
Q 016762 183 NGQLGMGTMKLSRLA 197 (383)
Q Consensus 183 Sa~~g~Gi~~L~~~l 197 (383)
|+++|.|+.++.+.+
T Consensus 143 Sa~~~~gi~~l~~~l 157 (162)
T cd04138 143 SAKTRQGVEEAFYTL 157 (162)
T ss_pred cCCCCCCHHHHHHHH
Confidence 999999998875544
No 306
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.71 E-value=0.00014 Score=73.58 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCC--CcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC---c-H----HHHHH---hcCCCeEEE
Q 016762 87 DADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT---H-P----LMDQW---LGNRKRILV 153 (383)
Q Consensus 87 ~~~~vi~~~~L~--~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~---~-~----~l~~~---l~~k~~ilV 153 (383)
+..+++||..-- ...|. ..+.....+.+++++++++|+|+....... + . ++..+ +.++|.++|
T Consensus 205 ~~~~~laD~PGliega~~~----~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV 280 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEG----VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVV 280 (424)
T ss_pred CceEEEEECCCCccccccc----chHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEE
Confidence 456788885421 11111 123344556789999999999986431111 1 1 12222 136899999
Q ss_pred EEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 154 LNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 154 lNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
+||+||.... ..+.......+..++++|++++.|+.+|.+.+.++.
T Consensus 281 ~NK~DL~~~~--e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 281 ANKMDLPEAE--ENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred EeCCCCcCCH--HHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999985332 122222233346788999999999999877765543
No 307
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.71 E-value=7.9e-05 Score=66.52 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=36.8
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~ 272 (383)
..+|.++|.+|||||||++++....... ..|.+..+...+.. +-.+.+.||||-
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~~~~~~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCcceeEEEEEECCEEEEEEECCCC
Confidence 4689999999999999999998543222 23333333333333 345889999995
No 308
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.71 E-value=0.0002 Score=75.65 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=68.6
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHH--
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMA-- 163 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~-- 163 (383)
..+.+||. ||| .++.......+..+|.+++|+|+..+....... +..+. .+.|+++|+||+|+....
T Consensus 70 ~~l~liDT--------PG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~ 140 (595)
T TIGR01393 70 YVLNLIDT--------PGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPE 140 (595)
T ss_pred EEEEEEEC--------CCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHH
Confidence 44566663 666 556777778899999999999998765443322 22222 367999999999996422
Q ss_pred H-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 164 D-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 164 ~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
. ...+.+.+.-....++++|+++|.|+.+|.+.+.+.
T Consensus 141 ~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~ 178 (595)
T TIGR01393 141 RVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKR 178 (595)
T ss_pred HHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHh
Confidence 1 123322221001247899999999999887766543
No 309
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.71 E-value=0.00014 Score=61.60 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~ 160 (383)
..++.+||. ||+ ..........+..+|+++.|+|+.++.+.... . +..+. ...|.++++||+|+.
T Consensus 48 ~~~~~l~D~--------~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 48 TVKLQIWDT--------AGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEEec--------CCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 456677773 443 44445556778999999999999864332211 1 11111 248999999999996
Q ss_pred -CHH-HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 161 -SMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 161 -~~~-~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+.. ......+.....+..++.+|++.+.|+.++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 119 DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 222 2222323334457789999999999998876554
No 310
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.71 E-value=9.4e-05 Score=66.03 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=63.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (383)
.+..+.+||.. |+ .+........+..+|.+++|+|+.++.+..+ .++.+++ .+.|++++.||+|
T Consensus 59 ~~~~~~i~D~~--------Gq-~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~D 129 (181)
T PLN00223 59 KNISFTVWDVG--------GQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
T ss_pred CCEEEEEEECC--------CC-HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCC
Confidence 35667788843 22 4445545567899999999999987543221 2333333 2578999999999
Q ss_pred CCCHHHHHHHHHHHHHcC-----CeEEEeeCcCCCchhhhhHHH
Q 016762 159 MISMADRNAWATYFAKQG-----TKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 159 L~~~~~~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+..........+.+.-.. ..++.+|+++|.|+.++.+.+
T Consensus 130 l~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 173 (181)
T PLN00223 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
T ss_pred CCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHH
Confidence 865433233222221001 124458999999988875544
No 311
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.71 E-value=0.00013 Score=62.83 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc----CCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l~----~k~~ilVlNK~DL~~ 161 (383)
..+.+||. ||+ .+........+..+|+++.|||..++.+..+. .+..+.. +.|+++++||+|+..
T Consensus 49 ~~l~~~D~--------~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 49 VRLQLWDT--------AGQ-ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred EEEEEEEC--------CCc-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 45678874 332 44455566778999999999999765443221 1222221 378999999999953
Q ss_pred HHH-HHH-HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 162 MAD-RNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 162 ~~~-~~~-w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
... ... ........+..++.+|++.+.|+.++.+.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 120 KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 321 222 22223345677889999999999988766543
No 312
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.70 E-value=5.6e-05 Score=66.34 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHhc-----CCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l~-----~k~~ilVlNK~D 158 (383)
.+..+.+||..-. .+........+..+|.+++|+|..++.+.. ...+..++. +.|+++|.||+|
T Consensus 41 ~~~~i~l~Dt~G~---------~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 41 KNLKFTIWDVGGK---------HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQD 111 (169)
T ss_pred CCEEEEEEECCCC---------hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence 4566778885322 333444556789999999999987653322 222333332 478999999999
Q ss_pred CCCH---HHHHHHHHHHHHcC----CeEEEeeCcCCCchhhhhHHH
Q 016762 159 MISM---ADRNAWATYFAKQG----TKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 159 L~~~---~~~~~w~~~l~~~g----~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+... ++...+.... +.+ ..++.+|+++|.|+.++.+.+
T Consensus 112 l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~g~gv~~~f~~l 156 (169)
T cd04158 112 VAGALSVEEMTELLSLH-KLCCGRSWYIQGCDARSGMGLYEGLDWL 156 (169)
T ss_pred cccCCCHHHHHHHhCCc-cccCCCcEEEEeCcCCCCCCHHHHHHHH
Confidence 9643 2333332211 111 246678999999998875554
No 313
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00026 Score=58.87 Aligned_cols=92 Identities=22% Similarity=0.181 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEeeCcC
Q 016762 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQL 186 (383)
Q Consensus 108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g-~~vi~iSa~~ 186 (383)
+.....+.-....+|+|+.|..+.+|.+...+.+..... +|.|-|++|+||+...++..-..+++..| ..++.+|+..
T Consensus 52 ~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~-k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d 130 (148)
T COG4917 52 PRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGV-KKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVD 130 (148)
T ss_pred hHHHHHHHHHhhccceeeeeecccCccccCCcccccccc-cceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccC
Confidence 445555666678999999999999998888887665544 56999999999997776666556677777 4577789999
Q ss_pred CCchhhhhHHHHHh
Q 016762 187 GMGTMKLSRLAKAL 200 (383)
Q Consensus 187 g~Gi~~L~~~l~~l 200 (383)
..|+++|...+..+
T Consensus 131 ~~gv~~l~~~L~~~ 144 (148)
T COG4917 131 NQGVEELVDYLASL 144 (148)
T ss_pred cccHHHHHHHHHhh
Confidence 99999998877654
No 314
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.69 E-value=0.00016 Score=62.71 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=65.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh---c-CCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL---G-NRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l---~-~k~~ilVlNK~DL~ 160 (383)
...+.+||. ||+ .+........++.++.++.|+|..++.+..+.. +..+. . +.|+++|.||+|+.
T Consensus 51 ~~~~~l~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 51 TIKAQIWDT--------AGQ-ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred EEEEEEEeC--------CCh-HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 355778873 222 444455556789999999999998655432211 11111 1 47899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.... .+.........+..++.+|++.|.|+.++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 122 HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 5321 122223333456778999999999998875544
No 315
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.69 E-value=0.00011 Score=65.79 Aligned_cols=105 Identities=11% Similarity=0.035 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---cCCCeEEEEEccCCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---GNRKRILVLNREDMIS 161 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l---~~k~~ilVlNK~DL~~ 161 (383)
...+-+||.... ..........+..+|++++|+|..++.+..+. .+..+. .+.|+++|.||+|+.+
T Consensus 49 ~~~l~i~D~~G~---------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 49 VVTLGIWDTAGS---------ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EEEEEEEECCCc---------hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 345667874332 22233333567899999999998765443221 122221 2579999999999864
Q ss_pred HHH------HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 162 MAD------RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 162 ~~~------~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
... ......+....+..++.+|+++|.|+.+|.+.+.+.
T Consensus 120 ~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred cccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 321 111222233446778899999999999887666543
No 316
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.69 E-value=0.00022 Score=61.66 Aligned_cols=103 Identities=10% Similarity=-0.108 Sum_probs=64.1
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~D 158 (383)
....+.+||..- | .+........+..+|.++.|||+.++.+.... .+.+.. .+.|+++|.||+|
T Consensus 46 ~~~~l~i~Dt~g---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~D 116 (164)
T smart00173 46 EVCLLDILDTAG---Q------EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCD 116 (164)
T ss_pred EEEEEEEEECCC---c------ccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 345666787432 2 33333444668899999999999875443221 111111 2579999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+.+... ...-.......+..++.+|+++|.|+.++.+.+
T Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 157 (164)
T smart00173 117 LESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157 (164)
T ss_pred ccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHH
Confidence 975321 111112233446778999999999999885544
No 317
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.69 E-value=0.00014 Score=66.58 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc----CCCeEEEEEcc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG----NRKRILVLNRE 157 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~----~k~~ilVlNK~ 157 (383)
...+.+||.. |+ ..........+..+|+|++|+|..++.+..+.. +.+... +.|+++|.||+
T Consensus 49 ~~~~~i~Dt~--------G~-~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~ 119 (215)
T cd04109 49 NVTLQVWDIG--------GQ-SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKT 119 (215)
T ss_pred EEEEEEEECC--------Cc-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECc
Confidence 4567788753 22 344444556789999999999998765543321 112211 23688999999
Q ss_pred CCCCHHH-H-HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 158 DMISMAD-R-NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 158 DL~~~~~-~-~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
||..... . .......+..+...+++|+++|.|+.++.+.+.+
T Consensus 120 DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~ 163 (215)
T cd04109 120 DLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAA 163 (215)
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 9974321 1 1111222344667889999999999988655443
No 318
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.68 E-value=4.2e-05 Score=63.58 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=32.9
Q ss_pred EeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-----CCcEEEEecCcccc
Q 016762 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGIIP 274 (383)
Q Consensus 222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-----~~~i~l~DTpG~i~ 274 (383)
++|.+|+|||||+|+|.+.... ......+..+...... +..+.++||||...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHH
Confidence 5899999999999999976532 1111111122222121 34688999999764
No 319
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.68 E-value=0.00011 Score=67.75 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=39.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i 273 (383)
..++|++||.+|||||||++++..... ....+..|++.....+..+ -.+.++||+|--
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 457899999999999999999864431 2234455555443333332 257899999974
No 320
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.68 E-value=0.00011 Score=64.91 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=34.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE-EE-EEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~-~~-~~~~~~---~i~l~DTpG~i 273 (383)
.+|+++|.+|||||||++++.+... . ....-|+.+ .. .+.++. .+.++||||..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF-P-DYHDPTIEDAYKQQARIDNEPALLDILDTAGQA 61 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-C-CCcCCcccceEEEEEEECCEEEEEEEEeCCCch
Confidence 5799999999999999999986542 1 111112211 11 223332 46789999974
No 321
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.68 E-value=0.00013 Score=67.39 Aligned_cols=103 Identities=14% Similarity=0.024 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~ 160 (383)
..++.+||.... ..........+..+|++|+|||..++.+..+.. +..+. .+.|+++|.||+||.
T Consensus 43 ~~~l~iwDt~G~---------e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 43 PYNISIWDTAGR---------EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEEEEEeCCCc---------ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 456788886433 222333345688999999999998765544321 22222 246899999999997
Q ss_pred C------------------------HHHHHHHHHHHHHc-----------CCeEEEeeCcCCCchhhhhHHHH
Q 016762 161 S------------------------MADRNAWATYFAKQ-----------GTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 161 ~------------------------~~~~~~w~~~l~~~-----------g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
. .++...|.+.+... +..++++|+++|.|+.++...+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 114 EEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred cccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 5 12233333322111 14578899999999988754443
No 322
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.68 E-value=6.7e-05 Score=79.45 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=41.3
Q ss_pred EEeEeecCCCChhHHHHhhhcCC--ccccCCCCCceeEEEEEEe----CCcEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~ 272 (383)
.|+++|.+|+|||||+|+|+|.+ ....+...|.|.+...... +..+.++||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence 48999999999999999999753 2233455799988764433 345789999996
No 323
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.68 E-value=7.4e-05 Score=65.51 Aligned_cols=103 Identities=12% Similarity=-0.004 Sum_probs=64.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMIS 161 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~~k~~ilVlNK~DL~~ 161 (383)
..++.+||.... .+........+..+|.++.|+|..++.+..+. ++.....+.|+++|.||+|+..
T Consensus 48 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~ 118 (166)
T cd00877 48 KIRFNVWDTAGQ---------EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD 118 (166)
T ss_pred EEEEEEEECCCC---------hhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc
Confidence 456778886432 22222223457889999999999866544322 1222222689999999999974
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
......-.+.....+..++.+|+++|.|+.++.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 119 RKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred ccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 3321111122334456789999999999988865543
No 324
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.67 E-value=5.9e-05 Score=65.89 Aligned_cols=31 Identities=42% Similarity=0.608 Sum_probs=25.6
Q ss_pred EeEeecCCCChhHHHHhhhcCCccccCCCCC
Q 016762 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250 (383)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg 250 (383)
|+++|-.++|||||||+|+|.....++..|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~ 31 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC 31 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccc
Confidence 6899999999999999999987666666543
No 325
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.67 E-value=0.00013 Score=62.92 Aligned_cols=103 Identities=12% Similarity=-0.075 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D 158 (383)
....+.+||... | +++.......+..+|.++.|||..++.+..+.. +..+. .+.|+++|.||+|
T Consensus 47 ~~~~l~i~Dt~G---~------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (163)
T cd04136 47 QQCMLEILDTAG---T------EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCD 117 (163)
T ss_pred EEEEEEEEECCC---c------cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 345566787532 2 333333345688999999999987654432211 11111 2579999999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 159 L~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+.+.... ..-....++.+..++.+|++.|.|+.++.+.+
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 118 LEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred ccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9753221 11111223345678899999999998876554
No 326
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.67 E-value=0.00019 Score=61.70 Aligned_cols=103 Identities=16% Similarity=0.022 Sum_probs=66.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
...+.+||. ||+ ..........+..+|.++.++|..++.+..+ ..+..+. .+.|+++|+||+|+
T Consensus 47 ~~~~~i~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~ 117 (164)
T cd04139 47 DVQLNILDT--------AGQ-EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDL 117 (164)
T ss_pred EEEEEEEEC--------CCh-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccc
Confidence 455677773 332 3344444567899999999999876543211 1222222 36899999999999
Q ss_pred CCHH--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 160 ISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 160 ~~~~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.... ............+..++.+|+++|.|+.++.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 118 EDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 7621 22222233344567899999999999998866554
No 327
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.66 E-value=0.0002 Score=62.61 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~D 158 (383)
...+.+||. ||+ .++.......++.+|.+++++|+.++.+..+ +..++ .+.|+++|.||+|
T Consensus 52 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pvivv~nK~D 120 (168)
T cd01866 52 QIKLQIWDT--------AGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNH--LTSWLEDARQHSNSNMTIMLIGNKCD 120 (168)
T ss_pred EEEEEEEEC--------CCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 356778874 332 4444555677899999999999986544322 22222 2578999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+..... ...-..+..+.+..++++|++.+.|+.++...+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 121 LESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 974321 122223344567788999999999998875433
No 328
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.66 E-value=8.4e-05 Score=65.39 Aligned_cols=54 Identities=22% Similarity=0.132 Sum_probs=37.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i 273 (383)
++++++|.+|||||||++++.+.. .....+.|+.+... +.++. .+.++||||.-
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD 59 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCCh
Confidence 368999999999999999998643 33444555544322 22332 46789999974
No 329
>PRK11058 GTPase HflX; Provisional
Probab=97.66 E-value=0.0005 Score=69.79 Aligned_cols=85 Identities=14% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH---h--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCe-EEEeeCc
Q 016762 113 ELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW---L--GNRKRILVLNREDMISMADRNAWATYFAKQGTK-VIFSNGQ 185 (383)
Q Consensus 113 ~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~---l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~-vi~iSa~ 185 (383)
...+.+..+|++|.|+|+.++....+.. +..+ + .++|+++|+||+|+.+..... ... ...+.. ++++|++
T Consensus 269 ~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~-~~~~~~~~v~ISAk 345 (426)
T PRK11058 269 ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDR-DEENKPIRVWLSAQ 345 (426)
T ss_pred HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHH-HhcCCCceEEEeCC
Confidence 3446688999999999998875544321 1122 2 268999999999997542211 111 123433 4789999
Q ss_pred CCCchhhhhHHHHHh
Q 016762 186 LGMGTMKLSRLAKAL 200 (383)
Q Consensus 186 ~g~Gi~~L~~~l~~l 200 (383)
+|.|+.+|.+.+.+.
T Consensus 346 tG~GIdeL~e~I~~~ 360 (426)
T PRK11058 346 TGAGIPLLFQALTER 360 (426)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999987776554
No 330
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.66 E-value=8.9e-05 Score=67.60 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=37.1
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCC-ceeEEEEEEeCC----cEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKWVRFGK----DLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-tT~~~~~~~~~~----~i~l~DTpG~i~ 274 (383)
.+|+++|-.|||||||+|+|.+..... +..|. .+.......... .+.++||+|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~ 66 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE-GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE 66 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc-cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH
Confidence 689999999999999999999754322 22222 223333322222 378899999853
No 331
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.66 E-value=7.8e-05 Score=70.98 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+|+++|.+|+|||||+|+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5999999999999999999853
No 332
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.66 E-value=0.00021 Score=61.30 Aligned_cols=102 Identities=21% Similarity=0.148 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~-~k~~ilVlNK~DL~~ 161 (383)
..+.+||. ||+ ..........+..+|.+++|+|..++.+.... ++..... +.|+++|+||+|+..
T Consensus 49 ~~~~~~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 49 IDLAIWDT--------AGQ-ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred EEEEEEEC--------Cch-HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 45677873 222 23333334567889999999998765432211 1222222 578999999999975
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
... .....++....+..++++|++++.|+.++.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 120 QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 332 2233334445577889999999999988866553
No 333
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.65 E-value=0.00014 Score=64.05 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=37.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE---EEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~---~~~~~~~~---~i~l~DTpG~i 273 (383)
+..+|.++|.+|||||||+|++.+.. ..+.....|+.. ...+.++. .+.+.||+|--
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE 65 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc
Confidence 45789999999999999999999754 222333344322 22333332 35678999864
No 334
>PLN03118 Rab family protein; Provisional
Probab=97.64 E-value=0.00027 Score=64.49 Aligned_cols=105 Identities=13% Similarity=0.054 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh------cCCCeEEEEEcc
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNRE 157 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l------~~k~~ilVlNK~ 157 (383)
....+.+||.. |+ .++.......++.+|.+++|+|..++.+..+.. +...+ .+.|.++|.||+
T Consensus 60 ~~~~l~l~Dt~--------G~-~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~ 130 (211)
T PLN03118 60 KRLKLTIWDTA--------GQ-ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV 130 (211)
T ss_pred EEEEEEEEECC--------Cc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 34567788842 22 444444556789999999999997654433321 11111 245889999999
Q ss_pred CCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 158 DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
|+...... ..........+..++.+|++.|.|+.++.+.+..
T Consensus 131 Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 174 (211)
T PLN03118 131 DRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELAL 174 (211)
T ss_pred cccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99753321 2222333445677889999999999988655543
No 335
>PRK04213 GTP-binding protein; Provisional
Probab=97.64 E-value=0.0011 Score=59.78 Aligned_cols=110 Identities=14% Similarity=0.020 Sum_probs=62.8
Q ss_pred cEEEEcCCCCC--cCCCchHHHHHHHHHHHH----hhhcCeEEEEEecCCCCCC-----------CcHHHHHHh--cCCC
Q 016762 89 DLYYWTKSLRP--VQWYPGHIAKTEKELKDQ----LKLMDVVIEVRDARIPLST-----------THPLMDQWL--GNRK 149 (383)
Q Consensus 89 ~~vi~~~~L~~--~qw~Pgh~~~~~~~l~~~----idr~DlILeV~DaR~p~~~-----------~~~~l~~~l--~~k~ 149 (383)
++.+||...-. ..+-+.+..++...+... ++.+|+++.|+|+...... .+.++...+ .+.|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 57888854310 011122234444443333 4567899999998643211 012223332 3789
Q ss_pred eEEEEEccCCCCHH--HHHHHHHHHHHc------CCeEEEeeCcCCCchhhhhHHHHH
Q 016762 150 RILVLNREDMISMA--DRNAWATYFAKQ------GTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 150 ~ilVlNK~DL~~~~--~~~~w~~~l~~~------g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+++|+||+|+.... ....+.+.+.-. +..++.+|+++| |+.++.+.+.+
T Consensus 133 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~ 189 (201)
T PRK04213 133 PIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRK 189 (201)
T ss_pred eEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHH
Confidence 99999999997644 233333332210 124789999999 99988666544
No 336
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.63 E-value=0.0002 Score=72.74 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=63.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~------l~~~l~~k~~ilVlNK~DL~ 160 (383)
+..+.+||. ||| +++.+.+...+..+|++++|+|+..+......+ +.......++++++||+|+.
T Consensus 84 ~~~i~iiDt--------pGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 84 KYEVTIVDC--------PGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSV 154 (426)
T ss_pred CeEEEEEEC--------CCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhcc
Confidence 345666663 676 556666666678999999999998874332222 22223345788999999997
Q ss_pred C--HHH----HHHHHHHHHHcC-----CeEEEeeCcCCCchhh
Q 016762 161 S--MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (383)
Q Consensus 161 ~--~~~----~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~ 192 (383)
+ .+. ..++.+++...+ ..++++|+++|.|+.+
T Consensus 155 ~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 155 NYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 4 322 223334444444 4678999999999875
No 337
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.63 E-value=0.00012 Score=63.45 Aligned_cols=103 Identities=11% Similarity=-0.060 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D 158 (383)
....+.+||..- | .++.......+..+|.++.|+|..++.+..+.. +..+. .+.|+++|.||+|
T Consensus 47 ~~~~l~i~Dt~G---~------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (164)
T cd04175 47 QQCMLEILDTAG---T------EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 117 (164)
T ss_pred EEEEEEEEECCC---c------ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 345566788522 2 334444446789999999999987654432211 12221 2579999999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 159 L~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+...... ..-....++.+..++.+|+++|.|+.++...+
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 118 LEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred chhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9643211 11112223456788999999999998875544
No 338
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.62 E-value=0.00028 Score=72.60 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc---HHHHHHhcCCCeEEEEEccCCCCH--HHHHHHHH----HHHH
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWLGNRKRILVLNREDMISM--ADRNAWAT----YFAK 174 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~---~~l~~~l~~k~~ilVlNK~DL~~~--~~~~~w~~----~l~~ 174 (383)
||| .++.+.+...+..+|+++.|+|+..+..... ..+...++.++.++++||+|++.. +......+ ++..
T Consensus 115 PGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~ 193 (474)
T PRK05124 115 PGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQ 193 (474)
T ss_pred CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHh
Confidence 787 4566666656899999999999987654432 233444445678899999999842 21222222 2222
Q ss_pred cC----CeEEEeeCcCCCchhhhh
Q 016762 175 QG----TKVIFSNGQLGMGTMKLS 194 (383)
Q Consensus 175 ~g----~~vi~iSa~~g~Gi~~L~ 194 (383)
.+ ..++++|+++|.|+..+.
T Consensus 194 ~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 194 LPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred cCCCCCceEEEEEeecCCCccccc
Confidence 22 568999999999987653
No 339
>PRK12736 elongation factor Tu; Reviewed
Probab=97.62 E-value=0.00049 Score=69.21 Aligned_cols=83 Identities=18% Similarity=0.087 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH-----HHHHHHHHc
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAKQ 175 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~-----~w~~~l~~~ 175 (383)
||| +++.+.+..-+..+|+++.|+|+..+......+...++ .+.| .++++||+|+++.++.. +..+++...
T Consensus 83 PGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 83 PGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 887 45666666667899999999999876544443333333 2567 56889999998544322 222333334
Q ss_pred C-----CeEEEeeCcCC
Q 016762 176 G-----TKVIFSNGQLG 187 (383)
Q Consensus 176 g-----~~vi~iSa~~g 187 (383)
+ ..++++|+.+|
T Consensus 162 ~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 162 DFPGDDIPVIRGSALKA 178 (394)
T ss_pred CCCcCCccEEEeecccc
Confidence 4 36889999987
No 340
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.61 E-value=9.7e-05 Score=64.67 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=33.5
Q ss_pred EeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
|.++|.+|||||||+|++.+.... ...+..|. +...+.. +..+.+.||||--
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~--~~~~i~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF--NSVAIPTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCc--ceEEEeeCCeEEEEEECCCCc
Confidence 789999999999999999965321 11122222 2112222 3457899999964
No 341
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.61 E-value=4.9e-05 Score=66.90 Aligned_cols=84 Identities=19% Similarity=0.144 Sum_probs=53.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-HHHHHh---cCCCeEEEEEccCCCCHHHH--HHHHHHHHHcCC-eEEEeeCcCCC
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLGM 188 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~-~l~~~l---~~k~~ilVlNK~DL~~~~~~--~~w~~~l~~~g~-~vi~iSa~~g~ 188 (383)
..++.+|++++|+|+.++.+.... ++...+ .+.|+++|.||+|+.+.... ....++.+..+. .++.+|++.|.
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 457999999999999765332221 222222 25799999999999654321 111122233343 45889999999
Q ss_pred chhhhhHHHHH
Q 016762 189 GTMKLSRLAKA 199 (383)
Q Consensus 189 Gi~~L~~~l~~ 199 (383)
|+.++.+.+.+
T Consensus 153 ~v~~lf~~l~~ 163 (169)
T cd01892 153 SSNELFTKLAT 163 (169)
T ss_pred cHHHHHHHHHH
Confidence 99887665544
No 342
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.61 E-value=0.00017 Score=63.11 Aligned_cols=103 Identities=13% Similarity=-0.054 Sum_probs=61.8
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh---cCCCeEEEEEccCC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDM 159 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l---~~k~~ilVlNK~DL 159 (383)
..+..+.+||.... .++.......++.+|.+++|+|+.++.+... ..+..+. .+.|+++|.||+|+
T Consensus 41 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl 111 (164)
T cd04162 41 TQDAIMELLEIGGS---------QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDL 111 (164)
T ss_pred eCCeEEEEEECCCC---------cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCC
Confidence 34567788885322 2333344467999999999999877543221 2233333 36899999999998
Q ss_pred CCHHHHHHHHHH-----H-HHcCCeEEEeeCcC------CCchhhhhHH
Q 016762 160 ISMADRNAWATY-----F-AKQGTKVIFSNGQL------GMGTMKLSRL 196 (383)
Q Consensus 160 ~~~~~~~~w~~~-----l-~~~g~~vi~iSa~~------g~Gi~~L~~~ 196 (383)
..........+. + .+.+..++.+|++. +.|+.++-+.
T Consensus 112 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~ 160 (164)
T cd04162 112 PAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred cCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence 654332221111 2 22345566677776 7777665443
No 343
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.61 E-value=0.00034 Score=62.62 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=66.4
Q ss_pred cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH----HHhcCCCeEEEEEc
Q 016762 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNR 156 (383)
Q Consensus 83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~----~~l~~k~~ilVlNK 156 (383)
+......+-+||..-+ +.........+..+|.++.|+|..++.+..+. .+. +...+.|+++|.||
T Consensus 48 ~~~~~~~l~iwDtaG~---------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK 118 (182)
T cd04172 48 IDTQRIELSLWDTSGS---------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 118 (182)
T ss_pred ECCEEEEEEEEECCCc---------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEC
Confidence 3445577889986433 33333334568999999999998776554432 111 11236799999999
Q ss_pred cCCCCH-----------H---HHHHHHHHHHHcCC-eEEEeeCcCCCc-hhhhhHH
Q 016762 157 EDMISM-----------A---DRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRL 196 (383)
Q Consensus 157 ~DL~~~-----------~---~~~~w~~~l~~~g~-~vi~iSa~~g~G-i~~L~~~ 196 (383)
+||... . ..++..++-++.|. .++.+|+++|.| +.++-..
T Consensus 119 ~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 119 SDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred hhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence 998531 0 01122233345564 788999999998 8877443
No 344
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.60 E-value=0.00014 Score=63.29 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=53.5
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh---cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEee
Q 016762 114 LKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL---GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (383)
Q Consensus 114 l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l---~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iS 183 (383)
....+..+|+++.++|+.++.+..+. .+.... .+.|+++|.||+|+..... ........+..+..++.+|
T Consensus 65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 144 (165)
T cd04146 65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVS 144 (165)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeC
Confidence 34568899999999999876443321 122222 2688999999999864321 1112222334567788899
Q ss_pred CcCC-CchhhhhHHH
Q 016762 184 GQLG-MGTMKLSRLA 197 (383)
Q Consensus 184 a~~g-~Gi~~L~~~l 197 (383)
+++| .|+.++.+.+
T Consensus 145 a~~~~~~v~~~f~~l 159 (165)
T cd04146 145 AAEDYDGVHSVFHEL 159 (165)
T ss_pred CCCCchhHHHHHHHH
Confidence 9998 4887775443
No 345
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.60 E-value=0.00091 Score=60.28 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhh-hc--CeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHH-cC---
Q 016762 106 HIAKTEKELKDQLK-LM--DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-QG--- 176 (383)
Q Consensus 106 h~~~~~~~l~~~id-r~--DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~g--- 176 (383)
+.+...+.+.+++. |. ..++.++|+|.+....+.++.+++. +.|.++|+||+|.++..+...-.....+ .+
T Consensus 89 ~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~ 168 (200)
T COG0218 89 VKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP 168 (200)
T ss_pred HHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence 34555556667763 34 4577888999999998888888775 7899999999999998665443333331 11
Q ss_pred -Ce--EEEeeCcCCCchhhhhHHHHHh
Q 016762 177 -TK--VIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 177 -~~--vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.. ++++|+..+.|+++|++.+.+.
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHH
Confidence 22 7788999999999888776654
No 346
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.60 E-value=0.0002 Score=62.65 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~----~l~~k~~ilVlNK~DL 159 (383)
....+.+||..-. ..........++.+|+++.++|..++.+..+.. +.. ...+.|+++|.||+|+
T Consensus 44 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 44 KPVELGLWDTAGQ---------EDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred EEEEEEEEECCCC---------cccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhh
Confidence 4456788885332 122222234578999999999988764443221 111 1237899999999999
Q ss_pred CCHHH-H-------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762 160 ISMAD-R-------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 160 ~~~~~-~-------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.+... . ..-.+..+..+. .++.+|+++|.|+.++.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~ 168 (174)
T smart00174 115 REDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAI 168 (174)
T ss_pred hhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHH
Confidence 65321 0 011112233453 788899999999988755543
No 347
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.59 E-value=0.00017 Score=62.88 Aligned_cols=106 Identities=11% Similarity=-0.074 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H----HHHHh----cCCCeEEEEEc
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL----GNRKRILVLNR 156 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~----l~~~l----~~k~~ilVlNK 156 (383)
....+.+||..-.. +........+..+|.++.|+|..++.+..+. . +.+.. .+.|+++|.||
T Consensus 47 ~~~~l~i~Dt~G~~---------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (165)
T cd04140 47 NICTLQITDTTGSH---------QFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNK 117 (165)
T ss_pred EEEEEEEEECCCCC---------cchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEC
Confidence 34567788854321 2222223457889999999998876543321 1 22221 25799999999
Q ss_pred cCCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 157 EDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 157 ~DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+|+.+..+. ..-..+....+..++.+|+++|.|+.++.+.+-++
T Consensus 118 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 118 CDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 999753221 11112223345678899999999998886665443
No 348
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.59 E-value=0.00051 Score=62.30 Aligned_cols=111 Identities=14% Similarity=-0.046 Sum_probs=63.9
Q ss_pred cCCCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEE
Q 016762 85 DLDADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVL 154 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l----~~k~~ilVl 154 (383)
+...++.+||..... -|++. -..........++.+|++++|+|..++.+..... +.+.. .+.|+++|.
T Consensus 46 ~~~~~l~i~Dt~G~~--~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 46 GRVYDLHILDVPNMQ--RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred CEEEEEEEEeCCCcc--cCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 334567788864321 11110 1111222334578999999999998765443221 11111 357999999
Q ss_pred EccCCCCHHHHHHH-HHH-HH-HcCCeEEEeeCcCCCchhhhhHHH
Q 016762 155 NREDMISMADRNAW-ATY-FA-KQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 155 NK~DL~~~~~~~~w-~~~-l~-~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
||+|+...+..... ... .. ..+..++++|+++|.|+.+|.+.+
T Consensus 124 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i 169 (198)
T cd04142 124 NKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKEL 169 (198)
T ss_pred ECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHH
Confidence 99999653211111 111 12 235678999999999998875443
No 349
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.59 E-value=0.00019 Score=63.43 Aligned_cols=104 Identities=12% Similarity=-0.083 Sum_probs=66.5
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNR 156 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK 156 (383)
......+.+||..- | .++.......+..+|.++.|+|..++.+..+.. +.+.. .+.|+++|.||
T Consensus 46 ~~~~~~l~i~Dt~G---~------~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK 116 (172)
T cd04141 46 DNEPALLDILDTAG---Q------AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNK 116 (172)
T ss_pred CCEEEEEEEEeCCC---c------hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 34446677888422 2 334444446788999999999998776654432 22221 25799999999
Q ss_pred cCCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHH
Q 016762 157 EDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 157 ~DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~ 196 (383)
+|+.....+ ..-.+..++.+..++.+|++.|.|+.++-+.
T Consensus 117 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 117 VDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred hhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 998543211 1111222345678889999999999877443
No 350
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.58 E-value=0.00031 Score=62.98 Aligned_cols=103 Identities=11% Similarity=-0.000 Sum_probs=63.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHH---h----cCCCeEEEEEcc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQW---L----GNRKRILVLNRE 157 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~---l----~~k~~ilVlNK~ 157 (383)
...+.+||.. |+ .+........+..+|+++.|||..++.+..+. . +..+ . .+.|+++|.||+
T Consensus 46 ~~~l~i~Dt~--------G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~ 116 (190)
T cd04144 46 PCMLEVLDTA--------GQ-EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKC 116 (190)
T ss_pred EEEEEEEECC--------Cc-hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEECh
Confidence 3456778753 22 33444444678999999999998765443221 1 1111 1 247899999999
Q ss_pred CCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 158 DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
|+...... ..-.+.....+..++.+|+++|.|+.++.+.+.
T Consensus 117 Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 117 DKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred hccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99642221 111122234467789999999999988755443
No 351
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.58 E-value=0.00013 Score=65.15 Aligned_cols=104 Identities=10% Similarity=0.083 Sum_probs=63.5
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHhc-----CCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l~-----~k~~ilVlNK~D 158 (383)
.+..+.+||.. |+ .+........++.+|++++|+|+.++.+.. ..++.+.+. +.|+++|.||.|
T Consensus 59 ~~~~~~l~D~~--------G~-~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 129 (182)
T PTZ00133 59 KNLKFTMWDVG--------GQ-DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQD 129 (182)
T ss_pred CCEEEEEEECC--------CC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCC
Confidence 45667888853 32 444555557799999999999987643221 223333332 478999999999
Q ss_pred CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+..........+.+. .....++.+|+++|.|+.++.+.+.
T Consensus 130 l~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 130 LPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 864322122222221 1111344679999999988865543
No 352
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.58 E-value=4.3e-05 Score=68.50 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=39.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccc-----------------cCCCCCceeEEEEEE-----eCCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-----------------AAPRPGVTRVLKWVR-----FGKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~-----------------v~~~pgtT~~~~~~~-----~~~~i~l~DTpG~i 273 (383)
.++|+++|..++|||||+++|++..... .+...|.|.+..... -+..+.++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3579999999999999999998543211 111246666643333 24578999999974
No 353
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.58 E-value=0.00028 Score=71.63 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCC--CCCCCcHHHHHH---hcCCCeEEEEEccCCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPLMDQW---LGNRKRILVLNREDMIS 161 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~--p~~~~~~~l~~~---l~~k~~ilVlNK~DL~~ 161 (383)
+..+.+||. ||| +++.+.+...+..+|++++|+|+.+ +......+...+ ....++++++||+|+..
T Consensus 83 ~~~i~liDt--------pG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDC--------PGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEEC--------CCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 445566663 665 4555555556789999999999987 333322222222 22346889999999975
Q ss_pred H--HHH----HHHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762 162 M--ADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 162 ~--~~~----~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L 193 (383)
. +.. ....+.+...| ..++++|+++|.|+.++
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 2 111 12223333344 35889999999998764
No 354
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.57 E-value=0.00014 Score=64.90 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||.. |+ .+........++.+|.+++|+|+.++.... ...+..++ .+.|+++|+||+|+
T Consensus 60 ~~~~~~~D~~--------G~-~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 60 NIKFTTFDLG--------GH-QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred CEEEEEEECC--------CC-HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 4567778742 32 333444457789999999999998763321 22333333 36899999999998
Q ss_pred C---CHHHHHHHHHHHHH---------cCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 I---SMADRNAWATYFAK---------QGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~---~~~~~~~w~~~l~~---------~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
. +.+++......... .-..++.+|+++|.|++++.+.+
T Consensus 131 ~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 131 PYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred cCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence 5 34444333221110 11357889999999998876554
No 355
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.57 E-value=0.00018 Score=64.41 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=33.9
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE-EEEEEeC---CcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~-~~~~~~~---~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||++++.+.... -...|....+ ...+.++ ..+.+.||+|--
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEEEECCEEEEEEEEECCCCh
Confidence 6899999999999999999865421 1111221111 1122232 246789999963
No 356
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.56 E-value=0.00046 Score=73.62 Aligned_cols=88 Identities=23% Similarity=0.319 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH---HHhcCCCeEEEEEccCCCC--HHHHHH----HHHHHHH
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD---QWLGNRKRILVLNREDMIS--MADRNA----WATYFAK 174 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~---~~l~~k~~ilVlNK~DL~~--~~~~~~----w~~~l~~ 174 (383)
||| +++.+.+...+..+|++++|+|+..+......+.. ..+..+++++++||+|+++ .+.... ..+++.+
T Consensus 112 PG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~ 190 (632)
T PRK05506 112 PGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAK 190 (632)
T ss_pred CCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHH
Confidence 787 45666666678999999999999877655433322 2233467888999999985 222222 2222334
Q ss_pred cC---CeEEEeeCcCCCchhh
Q 016762 175 QG---TKVIFSNGQLGMGTMK 192 (383)
Q Consensus 175 ~g---~~vi~iSa~~g~Gi~~ 192 (383)
.+ ..++++|+++|.|+.+
T Consensus 191 ~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 191 LGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cCCCCccEEEEecccCCCccc
Confidence 44 3488999999999874
No 357
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.55 E-value=0.00013 Score=74.17 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=41.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccc------------------------------cCCCCCceeEEEEEEe---CC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 262 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~------------------------------v~~~pgtT~~~~~~~~---~~ 262 (383)
..++|+++|.+|+|||||+++|+...... .+...|+|.+.....+ +.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 45789999999999999999998421110 1124589999866555 34
Q ss_pred cEEEEecCcc
Q 016762 263 DLEFLDSPGI 272 (383)
Q Consensus 263 ~i~l~DTpG~ 272 (383)
.+.++||||.
T Consensus 86 ~i~iiDtpGh 95 (426)
T TIGR00483 86 EVTIVDCPGH 95 (426)
T ss_pred EEEEEECCCH
Confidence 6889999994
No 358
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.55 E-value=0.001 Score=57.04 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=57.8
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHH------HcCCeEEEeeCcCCCch
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA------KQGTKVIFSNGQLGMGT 190 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l~------~~g~~vi~iSa~~g~Gi 190 (383)
+..++++.|+|...+......++.+++. +.|+++|+||+|+.+..........+. .....++++|++.+.|+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGI 159 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence 5678899999998765555555555554 578999999999987665443332222 12256889999999999
Q ss_pred hhhhHHHHHh
Q 016762 191 MKLSRLAKAL 200 (383)
Q Consensus 191 ~~L~~~l~~l 200 (383)
.++.+.+.++
T Consensus 160 ~~l~~~l~~~ 169 (170)
T cd01876 160 DELRALIEKW 169 (170)
T ss_pred HHHHHHHHHh
Confidence 9988776653
No 359
>PLN03108 Rab family protein; Provisional
Probab=97.55 E-value=0.00046 Score=63.05 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=65.4
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~ 161 (383)
..+-+||..- + ..+.......+..+|.++.|+|...+.+..+. .+.... ...|+++|.||+||..
T Consensus 55 i~l~l~Dt~G--------~-~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 55 IKLQIWDTAG--------Q-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred EEEEEEeCCC--------c-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 4566777432 1 33444445678899999999999776544332 122111 2578999999999975
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhh-hHHHHHhh
Q 016762 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL-SRLAKALA 201 (383)
Q Consensus 162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L-~~~l~~l~ 201 (383)
... ...-.++.++.+..++.+|++++.|+.++ ..+++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 321 11222233445678889999999999885 34444443
No 360
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.55 E-value=0.001 Score=66.96 Aligned_cols=84 Identities=20% Similarity=0.118 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHHHH-----HHHHHHHHc
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAKQ 175 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~i-lVlNK~DL~~~~~~~-----~w~~~l~~~ 175 (383)
||| +++...+..-+..+|.++.|+|++.+......+...++ .+.|.+ +++||+|+++.++.. +..+++...
T Consensus 83 pGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 83 PGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred Cch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 888 55666666667889999999999875443333322222 256655 689999998754321 222334443
Q ss_pred C-----CeEEEeeCcCCC
Q 016762 176 G-----TKVIFSNGQLGM 188 (383)
Q Consensus 176 g-----~~vi~iSa~~g~ 188 (383)
+ ..++++|+.+|.
T Consensus 162 ~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCCccCccEEECcccccc
Confidence 3 568899998774
No 361
>CHL00071 tufA elongation factor Tu
Probab=97.55 E-value=0.00055 Score=69.15 Aligned_cols=85 Identities=19% Similarity=0.131 Sum_probs=57.9
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH-----HHHHHHHH
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAK 174 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~-----~w~~~l~~ 174 (383)
-||| .++.+.+..-+..+|+++.|+|+..+......++..++ .+.| .++++||+|+++.++.. +...+++.
T Consensus 82 tPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 82 CPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred CCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3887 56677777778999999999999876654443433333 2567 66889999999755422 23334444
Q ss_pred cC-----CeEEEeeCcCCC
Q 016762 175 QG-----TKVIFSNGQLGM 188 (383)
Q Consensus 175 ~g-----~~vi~iSa~~g~ 188 (383)
.+ ..++++|+..|.
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred hCCCCCcceEEEcchhhcc
Confidence 33 457889988775
No 362
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.55 E-value=0.00026 Score=61.00 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL 159 (383)
..++.+||..- | .+........++.+|.++.++|..++.+..... +..+. .+.|+++|.||+|+
T Consensus 48 ~~~~~l~D~~g---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~ 118 (161)
T cd01863 48 KVKLAIWDTAG---Q------ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDK 118 (161)
T ss_pred EEEEEEEECCC---c------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcc
Confidence 35677888422 2 344444456688999999999987654432211 11111 25789999999999
Q ss_pred CCHH-HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~-~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.... ......+.....+..++++|+++|.|+.++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 119 ENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 7332 1122223334456778999999999998875543
No 363
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.55 E-value=0.00025 Score=63.15 Aligned_cols=103 Identities=13% Similarity=0.028 Sum_probs=66.8
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H-HHHH---hcCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L-MDQW---LGNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~-l~~~---l~~k~~ilVlNK~ 157 (383)
......+.+||..-+ .+........+..+|.+|.|+|..++.+..+. . +..+ ..+.|+++|.||+
T Consensus 45 ~~~~v~l~i~Dt~G~---------~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~ 115 (176)
T cd04133 45 DGNTVNLGLWDTAGQ---------EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKL 115 (176)
T ss_pred CCEEEEEEEEECCCC---------ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCh
Confidence 445577889985433 23333334578999999999999877665543 1 2222 1367899999999
Q ss_pred CCCCH---------------HHHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762 158 DMISM---------------ADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 158 DL~~~---------------~~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
||.+. ++...|. ++.+. .++.+|+++|.|+.++-+.+.
T Consensus 116 Dl~~~~~~~~~~~~~~~v~~~~~~~~a---~~~~~~~~~E~SAk~~~nV~~~F~~~~ 169 (176)
T cd04133 116 DLRDDKQYLADHPGASPITTAQGEELR---KQIGAAAYIECSSKTQQNVKAVFDAAI 169 (176)
T ss_pred hhccChhhhhhccCCCCCCHHHHHHHH---HHcCCCEEEECCCCcccCHHHHHHHHH
Confidence 99542 1222332 33454 578899999999988754443
No 364
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.55 E-value=0.00013 Score=67.19 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMI 160 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~ 160 (383)
....+.+||.... .+........+..+|.+|.|||..++.+..+.. +.....+.|+++|.||+||.
T Consensus 60 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 60 GKIRFYCWDTAGQ---------EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred eEEEEEEEECCCc---------hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 3467778875322 333333335688999999999988765443221 11122368999999999996
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHH
Q 016762 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 161 ~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~ 196 (383)
.......-..+.+..+..++.+|+++|.|+.++-+.
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred hccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 432111111333345667889999999998877543
No 365
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.55 E-value=0.0001 Score=75.85 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..++|+++|.+|+|||||+++|+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHh
Confidence 4688999999999999999999744
No 366
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.54 E-value=0.00038 Score=60.48 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=64.0
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~~ 161 (383)
..+.+||. ||| .+........+..+|+++.++|+..+.+.... . +..+. .+.|+++|.||+|+..
T Consensus 52 ~~l~i~D~--------~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 52 VKLQIWDT--------AGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred EEEEEEEC--------CCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 56778874 444 44455555678899999999999876543221 1 11111 1568999999999975
Q ss_pred HHH--HHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHH
Q 016762 162 MAD--RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 162 ~~~--~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l 197 (383)
... ...-.+..+..+ ..++.+|+++|.|+.++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 123 QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 432 111112223334 357899999999998875543
No 367
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.53 E-value=0.00027 Score=61.46 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=64.6
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H----HHHHhc-CCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG-NRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~----l~~~l~-~k~~ilVlNK~DL~~ 161 (383)
..+.+||. ||| ..........+..+|+++.++|..++.+.... . +..+.. +.|.++|.||+|+.+
T Consensus 56 ~~~~~~D~--------~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 56 IKLQIWDT--------AGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred EEEEEEEC--------CCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 45666773 333 44555556789999999999998765432211 1 112122 577899999999975
Q ss_pred HHH-HHHHHHHHHHc-CCeEEEeeCcCCCchhhhhHHHH
Q 016762 162 MAD-RNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 162 ~~~-~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
..+ .....+.+.+. ...++.+|+++|.|+.++.+.+.
T Consensus 127 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 127 RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 432 12223334332 35688999999999888765543
No 368
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.53 E-value=0.00057 Score=73.47 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HHHHHHHHHH----HHc
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQ 175 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~w~~~l----~~~ 175 (383)
||| ..+.......+..+|++++|+|+.++......+....+ .+.|+++++||+|+... .....+...+ ...
T Consensus 303 PGh-e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 303 PGH-EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW 381 (742)
T ss_pred CcH-HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence 888 55666666788999999999999875443222222222 36899999999999753 2222222111 112
Q ss_pred C--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 176 G--TKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 176 g--~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
| ..++++|+++|.|+.+|.+.+..+.
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 3 4688999999999999877765543
No 369
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.52 E-value=0.00025 Score=62.78 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=35.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
++|.++|-+|||||||++++.... . ..+...|+.+.. .+.++. .+.+.||+|--
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-F-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 60 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-C-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999998643 2 223322332211 223332 46799999974
No 370
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.52 E-value=0.00047 Score=61.37 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=64.7
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH----HHhcCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~----~~l~~k~~ilVlNK~ 157 (383)
.....++.+||..-+ ..........+..+|+++.|||..++.+..+. .+. +...+.|+++|.||+
T Consensus 45 ~~~~~~l~iwDt~G~---------~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~ 115 (178)
T cd04131 45 DEQRIELSLWDTSGS---------PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKT 115 (178)
T ss_pred CCEEEEEEEEECCCc---------hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEECh
Confidence 344567888885432 33333333568999999999999876655432 111 122367899999999
Q ss_pred CCCCH--------------HHHHHHHHHHHHcCC-eEEEeeCcCCCc-hhhhhHHH
Q 016762 158 DMISM--------------ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLA 197 (383)
Q Consensus 158 DL~~~--------------~~~~~w~~~l~~~g~-~vi~iSa~~g~G-i~~L~~~l 197 (383)
||.+. -..++..++-++.|. .++.+|+++|.+ +.++-..+
T Consensus 116 DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 116 DLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred hhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHH
Confidence 98531 001112222334564 678899999984 88765443
No 371
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.52 E-value=0.0004 Score=59.94 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||. ||| .+........+..+|.++.++|..++.+..+. + +.... .+.|+++|.||+|+.
T Consensus 48 ~~~l~l~D~--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 48 RVKLQIWDT--------AGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEEEEEC--------cch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 356678874 443 44445555678899999999999876544321 1 12111 267899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~ 196 (383)
.... ...........+..++.+|++++.|+.++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 156 (161)
T cd04113 119 DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLK 156 (161)
T ss_pred hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 5432 12223344556678999999999999887544
No 372
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.51 E-value=0.00018 Score=62.22 Aligned_cols=102 Identities=12% Similarity=-0.095 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL 159 (383)
...+.+||.... .++.......+..+|.++.|+|..++.+..+.. +.+.. .+.|+++|.||+|+
T Consensus 48 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl 118 (163)
T cd04176 48 PSVLEILDTAGT---------EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL 118 (163)
T ss_pred EEEEEEEECCCc---------ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 445667875332 233333445688999999999987755432211 11111 26899999999999
Q ss_pred CCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.+.... ..........+..++.+|+++|.|+.++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 119 ESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred hhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 653221 11111222345678899999999998875443
No 373
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.51 E-value=0.00021 Score=63.69 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~--~~~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+.++.+||. ||+ ..........+..+|.+++|+|+.++.+. ....+...+ .+.|+++++||+|+
T Consensus 62 ~~~~~l~D~--------~G~-~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl 132 (190)
T cd00879 62 NIKFKTFDL--------GGH-EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDL 132 (190)
T ss_pred CEEEEEEEC--------CCC-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence 345666774 333 23334444678999999999999765322 112233332 25899999999999
Q ss_pred CC---HHHHHHHHHHHHH-------------cCCeEEEeeCcCCCchhhhhHHHH
Q 016762 160 IS---MADRNAWATYFAK-------------QGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 160 ~~---~~~~~~w~~~l~~-------------~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.. .++...+...... ....++.+|+++|.|+.++.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~ 187 (190)
T cd00879 133 PGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLS 187 (190)
T ss_pred CCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHH
Confidence 63 3333333221110 113478899999999988766553
No 374
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.50 E-value=9.6e-05 Score=64.28 Aligned_cols=83 Identities=14% Similarity=-0.010 Sum_probs=54.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEccCCCCHHHHHH-------------HHHHHHHcC
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNREDMISMADRNA-------------WATYFAKQG 176 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~--l~~----~l~~k~~ilVlNK~DL~~~~~~~~-------------w~~~l~~~g 176 (383)
..++.+|+++.++|..++.+..... +.. ...+.|+++|.||+|+.+...... -.+.....+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 3568899999999998654432211 111 122589999999999976553211 112233344
Q ss_pred C-eEEEeeCcCCCchhhhhHHHH
Q 016762 177 T-KVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 177 ~-~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
. .++.+|++.|.|+.++...+.
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 147 AIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred CeEEEEeecCCCCCHHHHHHHHh
Confidence 4 788899999999988865543
No 375
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.50 E-value=0.00038 Score=61.64 Aligned_cols=105 Identities=10% Similarity=-0.043 Sum_probs=64.8
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~ 157 (383)
.+....+.+||..-. ..........+..+|++++|+|..++.+..+.. +...+ .+.|+++|.||+
T Consensus 45 ~~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~ 115 (175)
T cd01874 45 GGEPYTLGLFDTAGQ---------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 115 (175)
T ss_pred CCEEEEEEEEECCCc---------cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECH
Confidence 344467788886433 222222234688999999999998765544321 22222 267999999999
Q ss_pred CCCCHHHH-------------HHHHHHH-HHcC-CeEEEeeCcCCCchhhhhHHH
Q 016762 158 DMISMADR-------------NAWATYF-AKQG-TKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 158 DL~~~~~~-------------~~w~~~l-~~~g-~~vi~iSa~~g~Gi~~L~~~l 197 (383)
|+....+. ......+ ++.+ ..++.+|+++|.|+.++-+.+
T Consensus 116 Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 116 DLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence 98653211 1111112 2334 468899999999998875443
No 376
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.50 E-value=0.00058 Score=58.35 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCCCCHHH--HHHHHHHHHH
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAK 174 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL~~~~~--~~~w~~~l~~ 174 (383)
|||. .........+..+|+++.|+|...+.+..+. .+..... ..|+++|+||+|+..... .+.......+
T Consensus 55 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 133 (160)
T cd00876 55 AGQE-EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE 133 (160)
T ss_pred CChH-HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH
Confidence 4543 3344445678899999999998765432211 1222222 689999999999986321 1222223344
Q ss_pred cCCeEEEeeCcCCCchhhhhHHH
Q 016762 175 QGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 175 ~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.+..++.+|++.+.|+.++.+.+
T Consensus 134 ~~~~~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 134 WGCPFIETSAKDNINIDEVFKLL 156 (160)
T ss_pred cCCcEEEeccCCCCCHHHHHHHH
Confidence 55678999999999998886554
No 377
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.50 E-value=0.00037 Score=62.92 Aligned_cols=104 Identities=11% Similarity=-0.043 Sum_probs=63.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL 159 (383)
...+.+||.. || .++.......+..+|++++|+|+.++.+..+. .+.... .+.|+++|+||+|+
T Consensus 46 ~~~l~i~D~~--------G~-~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 46 SLTLDILDTS--------GS-YSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred EEEEEEEECC--------Cc-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 3566778742 32 23333333568999999999998765433221 111111 25899999999999
Q ss_pred CCH-HHH--HHHHHHHH-HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISM-ADR--NAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~-~~~--~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+. ... ....+... ..+..++.+|+++|.|+.++.+.+.+
T Consensus 117 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 117 LEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred ccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 763 211 11112222 22456788999999999998766544
No 378
>PTZ00369 Ras-like protein; Provisional
Probab=97.49 E-value=0.00033 Score=62.68 Aligned_cols=102 Identities=10% Similarity=-0.083 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL 159 (383)
...+-+||.... ..........+..+|.++.|+|..++.+..+.. +.+.. .+.|+++|.||+|+
T Consensus 52 ~~~l~i~Dt~G~---------~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 122 (189)
T PTZ00369 52 TCLLDILDTAGQ---------EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDL 122 (189)
T ss_pred EEEEEEEeCCCC---------ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 344567775322 333344446788999999999987765422211 11111 15689999999998
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
..... ...........+..++.+|+++|.|+.++.+.+
T Consensus 123 ~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 123 DSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred ccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 64321 111122223446678999999999998875444
No 379
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.49 E-value=0.00014 Score=70.92 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=39.6
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCcccc----CCCCC---ceeEEE--EEEe-C----CcEEEEecCccccC
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPA----APRPG---VTRVLK--WVRF-G----KDLEFLDSPGIIPM 275 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v----~~~pg---tT~~~~--~~~~-~----~~i~l~DTpG~i~~ 275 (383)
+..++|++||-.|.||||+||+|.+...... ...+. .|..+. ...+ + -++.++|||||-..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 4678999999999999999999998632221 11222 222222 2222 1 24789999999753
No 380
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.48 E-value=0.00021 Score=63.21 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=33.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC---CcEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~i~l~DTpG~ 272 (383)
++|+++|.+|||||||+.++.... . ......++.+.. .+.++ -.+.+.||||-
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-F-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 59 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-C-CCcCCCcceeeeEEEEEECCEEEEEEEEECCCc
Confidence 479999999999999999998643 1 122111221211 12222 24679999996
No 381
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.48 E-value=0.00042 Score=66.31 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=56.6
Q ss_pred HHHHHhhhcCeEEEEEecCCCCC---CCcH-----HHHHH---hcCCCeEEEEEccCCCCHHHHHHHHHHH-HHc-CCeE
Q 016762 113 ELKDQLKLMDVVIEVRDARIPLS---TTHP-----LMDQW---LGNRKRILVLNREDMISMADRNAWATYF-AKQ-GTKV 179 (383)
Q Consensus 113 ~l~~~idr~DlILeV~DaR~p~~---~~~~-----~l~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~-g~~v 179 (383)
++.+.|+||+.+++|+|...+.. ..+. +++.+ +.++|.++|+||+|+...+. ..++.+ ++. +..+
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V 344 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHV 344 (366)
T ss_pred HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcE
Confidence 45678999999999999976622 1111 22222 23789999999999853322 122222 222 3468
Q ss_pred EEeeCcCCCchhhhhHHHHH
Q 016762 180 IFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 180 i~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+|++.++|..+|.+.+++
T Consensus 345 ~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 345 VPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EEeeeccccchHHHHHHHhh
Confidence 99999999999888776654
No 382
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.48 E-value=0.00037 Score=63.13 Aligned_cols=104 Identities=14% Similarity=-0.020 Sum_probs=65.6
Q ss_pred cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH----hcCCCeEEEEEc
Q 016762 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLNR 156 (383)
Q Consensus 83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~----l~~k~~ilVlNK 156 (383)
+....+.+.+||.... .... ....+..+|+++.|+|..++.+..+.. +... ..+.|+++|.||
T Consensus 61 ~~~~~v~l~iwDTaG~--------~~~~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK 129 (195)
T cd01873 61 VDGVSVSLRLWDTFGD--------HDKD---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCK 129 (195)
T ss_pred eCCEEEEEEEEeCCCC--------hhhh---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 3445677889986433 2211 123688999999999998766544331 2111 235789999999
Q ss_pred cCCCCH-------------------H--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 157 EDMISM-------------------A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 157 ~DL~~~-------------------~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+||... . ......+.-++.|..++.+|+++|.|+.++-+.+
T Consensus 130 ~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 130 LDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred hhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHH
Confidence 998631 0 0112222234557788899999999998775443
No 383
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.47 E-value=0.00053 Score=59.14 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL 159 (383)
.+..+.+||. ||+ .+........+..+|.+++++|+.++.+..... +..+. ...|++++.||+|+
T Consensus 48 ~~~~~~i~D~--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 48 TTVKFEIWDT--------AGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEEEEEeC--------Cch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 3455677773 443 333444445688999999999998654332211 12221 24679999999998
Q ss_pred CCHH--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.+.. ............+..++.+|+++|.|+.++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 119 ESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred cccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 7422 1223333444556788999999999998875544
No 384
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.47 E-value=0.00014 Score=68.39 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=35.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++.+... ......|+.+. ..+.++. .+.++||+|.-
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999986432 22333344332 2334432 46689999964
No 385
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00058 Score=61.02 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-CCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~-~k~~ilVlNK~DL 159 (383)
..+.+-|||... +++++..+..+.+.++-||.|+|.....+..+.. +.++.. +.++++|.||+|+
T Consensus 56 k~iKlQIWDTAG---------QERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl 126 (205)
T KOG0084|consen 56 KTIKLQIWDTAG---------QERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDL 126 (205)
T ss_pred eEEEEEeeeccc---------cHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeecccc
Confidence 344566676543 3888888889999999999999998766665532 222222 4599999999999
Q ss_pred CCHHHHH--HHHHHHHHcCCe-EEEeeCcCCCchhhh
Q 016762 160 ISMADRN--AWATYFAKQGTK-VIFSNGQLGMGTMKL 193 (383)
Q Consensus 160 ~~~~~~~--~w~~~l~~~g~~-vi~iSa~~g~Gi~~L 193 (383)
.+..... .-.++..+.+.. ++.+|++.+.++.+.
T Consensus 127 ~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 127 TEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred HhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 7654321 111233345666 778999999877665
No 386
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00014 Score=71.27 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=39.8
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccc------cCCCCCceeEEEEEE--eC-----CcEEEEecCcccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCP------AAPRPGVTRVLKWVR--FG-----KDLEFLDSPGIIP 274 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~------v~~~pgtT~~~~~~~--~~-----~~i~l~DTpG~i~ 274 (383)
+..+++++||-.+-|||||||+|....... ....+--|..+...+ +. -++.++|||||-.
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 456899999999999999999998763211 222333344443322 21 2467899999964
No 387
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.45 E-value=0.00014 Score=67.08 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=39.6
Q ss_pred EEeEeecCCCChhHHHHhhhcCCc------------------------------cccCCCCCceeEEEEEEe---CCcEE
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLKWVRF---GKDLE 265 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~------------------------------~~v~~~pgtT~~~~~~~~---~~~i~ 265 (383)
+|+++|.+++|||||+.+|..... .......|+|++.....+ +..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 389999999999999999963210 001124689998755444 55789
Q ss_pred EEecCccc
Q 016762 266 FLDSPGII 273 (383)
Q Consensus 266 l~DTpG~i 273 (383)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999974
No 388
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.45 E-value=0.00063 Score=61.15 Aligned_cols=106 Identities=14% Similarity=0.041 Sum_probs=66.0
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~----~l~~k~~ilVlNK~ 157 (383)
.....++-+||...+ .++.......+..+|+++.|+|..++.+..+.. +.. ...+.|+++|.||+
T Consensus 47 ~~~~~~l~i~Dt~G~---------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~ 117 (191)
T cd01875 47 DGRTVSLNLWDTAGQ---------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKK 117 (191)
T ss_pred CCEEEEEEEEECCCc---------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeCh
Confidence 344567778885322 344443345689999999999998766543331 111 11367999999999
Q ss_pred CCCCHHH-H-------------HHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762 158 DMISMAD-R-------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 158 DL~~~~~-~-------------~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
||..... . ..-.++.++.+ ..++.+||+.|.|+.++-+.+.
T Consensus 118 DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~ 173 (191)
T cd01875 118 DLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAV 173 (191)
T ss_pred hhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 9964311 0 01111122345 4688899999999988755443
No 389
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00016 Score=64.33 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=79.5
Q ss_pred ccccchhhh--ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc--
Q 016762 73 SIEAYEEEC--DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG-- 146 (383)
Q Consensus 73 ~iG~Gk~E~--~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l~-- 146 (383)
=||.-++-. .+.+.-+.+.|||...+ ++.......+.+.++.+|.|+|..+..+..... +..+..
T Consensus 37 TIGaaF~tktv~~~~~~ikfeIWDTAGQ---------ERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~ 107 (200)
T KOG0092|consen 37 TIGAAFLTKTVTVDDNTIKFEIWDTAGQ---------ERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA 107 (200)
T ss_pred ccccEEEEEEEEeCCcEEEEEEEEcCCc---------ccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC
Confidence 367777633 55555688999996554 555556667899999999999998655543321 222222
Q ss_pred C--CCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 147 N--RKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 147 ~--k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
. .-+-+|.||+||....+ .++-..|..++|.-++.+|+++|.|+.+|-..+-+
T Consensus 108 ~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~ 164 (200)
T KOG0092|consen 108 SPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAE 164 (200)
T ss_pred CCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHH
Confidence 2 22446999999998432 33344566677888889999999999887554433
No 390
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.44 E-value=0.00047 Score=63.65 Aligned_cols=103 Identities=15% Similarity=-0.004 Sum_probs=63.8
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HHhh-hcCeEEEEEecCCCCCCCcH-HH-HHHh-----cCCCeEEEEE
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLK-LMDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLN 155 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~id-r~DlILeV~DaR~p~~~~~~-~l-~~~l-----~~k~~ilVlN 155 (383)
..+.++.+||..-.. ..+. ..+. .+|+++.|+|+.++.+..+. ++ ..+. .+.|+++|.|
T Consensus 47 ~~~~~l~i~Dt~G~~------------~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~N 114 (221)
T cd04148 47 GEESTLVVIDHWEQE------------MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGN 114 (221)
T ss_pred CEEEEEEEEeCCCcc------------hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 345677888853332 1111 2345 89999999999876543321 11 1111 2579999999
Q ss_pred ccCCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 156 REDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 156 K~DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
|+|+...... ..........+..++.+|++.|.|+.++.+.+..
T Consensus 115 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~ 160 (221)
T cd04148 115 KSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVR 160 (221)
T ss_pred ChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999754321 1111222334667889999999999988665543
No 391
>PLN03110 Rab GTPase; Provisional
Probab=97.43 E-value=0.00065 Score=62.41 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE 157 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~ 157 (383)
..+.+.+||. ||+ .++.......++.+|.+++|+|..++.+..+ +..++ .+.|+++|.||+
T Consensus 59 ~~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~piiiv~nK~ 127 (216)
T PLN03110 59 KTVKAQIWDT--------AGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDN--VQRWLRELRDHADSNIVIMMAGNKS 127 (216)
T ss_pred EEEEEEEEEC--------CCc-HHHHHHHHHHhCCCCEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCeEEEEEECh
Confidence 3456778874 232 4455555677899999999999987654432 22222 257899999999
Q ss_pred CCCCHHHH-HHHHHHH-HHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 158 DMISMADR-NAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 158 DL~~~~~~-~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
||...... ......+ ...+..++.+|++.|.|+.++.+.+
T Consensus 128 Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l 169 (216)
T PLN03110 128 DLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169 (216)
T ss_pred hcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 98643221 1111122 2346789999999999998886554
No 392
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.43 E-value=0.00078 Score=58.98 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHH-HHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEcc
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNRE 157 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~-~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~ 157 (383)
...++.+||.. |+ ..+.. .....++.+|.++.|+|..++.+..+.. +.... .+.|+++|.||+
T Consensus 49 ~~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 119 (170)
T cd04115 49 ERIKVQLWDTA--------GQ-ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKC 119 (170)
T ss_pred eEEEEEEEeCC--------Ch-HHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 34567788842 22 33332 3346688999999999998765543321 11111 257999999999
Q ss_pred CCCCHHHH-HHHHHHH-HHcCCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762 158 DMISMADR-NAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (383)
Q Consensus 158 DL~~~~~~-~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~ 202 (383)
|+...... ......+ ...+..++.+|++.+.+...+.+.+..+.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 120 DLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred cchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 98644321 1122222 233467888999995555555555555543
No 393
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.43 E-value=0.00052 Score=61.20 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-CCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~-~k~~ilVlNK~DL~ 160 (383)
...+.+||..- + .+........++.+|.+++|||..++.+..+.. +..+.. ..|.++|.||+|+.
T Consensus 48 ~~~~~i~Dt~g---~------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 48 IIKLQIWDTNG---Q------ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEEEEEECCC---c------HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 45566777422 1 344445557789999999999997654432211 111111 46899999999997
Q ss_pred CHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 161 ~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+.... ..-..+....+..++.+|++.|.|+.++.+.+.
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 119 NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 43211 111122234466789999999999988755443
No 394
>PRK12735 elongation factor Tu; Reviewed
Probab=97.42 E-value=0.001 Score=66.99 Aligned_cols=84 Identities=21% Similarity=0.124 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHHHH-----HHHHHHHHc
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAKQ 175 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~i-lVlNK~DL~~~~~~~-----~w~~~l~~~ 175 (383)
||| +++.+.+...+..+|+++.|+|+..+......+...++ .+.|.+ +++||+|+++.++.. +...++...
T Consensus 83 PGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred CCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 888 56667777778899999999999875433322222222 256766 579999998643322 222233333
Q ss_pred C-----CeEEEeeCcCCC
Q 016762 176 G-----TKVIFSNGQLGM 188 (383)
Q Consensus 176 g-----~~vi~iSa~~g~ 188 (383)
+ ..++++|+..|.
T Consensus 162 ~~~~~~~~ii~~Sa~~g~ 179 (396)
T PRK12735 162 DFPGDDTPIIRGSALKAL 179 (396)
T ss_pred CCCcCceeEEecchhccc
Confidence 2 457889998874
No 395
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.42 E-value=0.00053 Score=72.24 Aligned_cols=94 Identities=18% Similarity=0.110 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC--HHHHHHHHHHH----HHc
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS--MADRNAWATYF----AKQ 175 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~--~~~~~~w~~~l----~~~ 175 (383)
||| ..+.....+....+|+++.|+|+.++......+..... .+.|+++++||+|+.. .+....+...+ ...
T Consensus 143 PGh-e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~ 221 (587)
T TIGR00487 143 PGH-EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDW 221 (587)
T ss_pred CCC-cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhc
Confidence 677 34444444668899999999999875433332222222 3789999999999953 33333322211 011
Q ss_pred C--CeEEEeeCcCCCchhhhhHHHH
Q 016762 176 G--TKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 176 g--~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+ ..++++|+++|.|+.+|.+.+.
T Consensus 222 ~~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 222 GGDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred CCCceEEEEECCCCCChHHHHHhhh
Confidence 2 3578999999999999876654
No 396
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.41 E-value=0.00047 Score=59.96 Aligned_cols=103 Identities=11% Similarity=0.099 Sum_probs=63.7
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH---HHh-cCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD---QWL-GNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~---~~l-~~k~~ilVlNK~DL 159 (383)
....+.+||.... .+........+..+|.++.|+|..++.+..... +. ... .+.|+++|.||+||
T Consensus 47 ~~~~l~i~D~~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 47 IKVRIQIWDTAGQ---------ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEEEEEeCCCc---------HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 3456778885322 333444456788999999999987654432211 11 111 14689999999999
Q ss_pred CCHHHH-HHHHHH-HHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADR-NAWATY-FAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~-~~w~~~-l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
...... ...... .+..+..++.+|++.|.|+.++.+.+
T Consensus 118 ~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 118 EQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 654321 111122 23345678899999999988875544
No 397
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.41 E-value=0.0013 Score=69.37 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=66.3
Q ss_pred EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---
Q 016762 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--- 164 (383)
Q Consensus 90 ~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~--- 164 (383)
+.+||. ||| ..+.......+..+|++++|+|+.++......+...++ .+.|.++++||+|+.+...
T Consensus 71 l~~iDT--------pG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 71 LLFIDT--------PGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHE 141 (590)
T ss_pred EEEEEC--------CCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhcc
Confidence 677774 555 44444445678899999999999876544333333332 3789999999999974210
Q ss_pred --------------H-HHHH-------HHHHHc-------------C--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 165 --------------R-NAWA-------TYFAKQ-------------G--TKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 165 --------------~-~~w~-------~~l~~~-------------g--~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
+ ..+. ..+.+. + ..++++|+++|.|+.+|...+..+.
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 0010 011211 1 4678999999999999987765443
No 398
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.40 E-value=0.00045 Score=61.74 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=35.1
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
++|+++|.+|||||||++++.+... .-...|....+. ..+.++. .+.+.||+|--
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence 3689999999999999999986532 111222221222 2334432 46789999963
No 399
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.39 E-value=0.0002 Score=66.68 Aligned_cols=57 Identities=35% Similarity=0.511 Sum_probs=45.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EE-EeCCcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WV-RFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~-~~~~~i~l~DTpG~i~~ 275 (383)
-+|++||+|.|||||+++.|+|-. ..++..-|+|.-.. .+ .-+.++.|.|-||+|..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiieg 119 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEG 119 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcc
Confidence 379999999999999999999753 56777888887642 22 23678999999999964
No 400
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.39 E-value=0.00041 Score=61.37 Aligned_cols=104 Identities=15% Similarity=0.032 Sum_probs=63.5
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNRED 158 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~D 158 (383)
.....+.+||..-. ..........+..+|.+|+|+|..++.+..+.. +...+ .+.|+++|.||+|
T Consensus 46 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~D 116 (174)
T cd01871 46 GKPVNLGLWDTAGQ---------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 116 (174)
T ss_pred CEEEEEEEEECCCc---------hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 34466778884322 233333335688999999999998765544321 22211 2579999999999
Q ss_pred CCCHHH-H-------------HHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHH
Q 016762 159 MISMAD-R-------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 159 L~~~~~-~-------------~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l 197 (383)
|.+... . ..-.+..++.+ ..++.+|+++|.|+.++.+.+
T Consensus 117 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 117 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred hccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHH
Confidence 964211 0 11111222344 367889999999998875543
No 401
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.39 E-value=0.00013 Score=66.82 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
+|+++|.+++|||||+++|+...
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 48999999999999999998643
No 402
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.37 E-value=0.00021 Score=62.79 Aligned_cols=104 Identities=13% Similarity=-0.034 Sum_probs=63.5
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH-HHh---cCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD-QWL---GNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~-~~l---~~k~~ilVlNK~ 157 (383)
......+.+||..- | .++.......+..+|.++.|+|..++.+..+. .+. .+. .+.|.++|.||+
T Consensus 44 ~~~~~~~~i~Dt~G---~------~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~ 114 (173)
T cd04130 44 DGKPVRLQLCDTAG---Q------DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQA 114 (173)
T ss_pred CCEEEEEEEEECCC---C------hhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence 33345667888432 2 22222223467899999999999876654332 111 121 257999999999
Q ss_pred CCCCHHH--------------HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHH
Q 016762 158 DMISMAD--------------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 158 DL~~~~~--------------~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~ 196 (383)
||.+... ...-..+.++.+. .++.+|+++|.|+.++.+.
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~ 168 (173)
T cd04130 115 DLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDT 168 (173)
T ss_pred hhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 9975321 1111122233454 7889999999999887543
No 403
>PRK00049 elongation factor Tu; Reviewed
Probab=97.37 E-value=0.0013 Score=66.26 Aligned_cols=85 Identities=21% Similarity=0.121 Sum_probs=56.6
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHHHH-----HHHHHHHH
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAK 174 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~i-lVlNK~DL~~~~~~~-----~w~~~l~~ 174 (383)
-||| .++.+.+...+..+|+++.|+|++.+......++..++ .+.|.+ +++||+|+++.++.. +..+.+..
T Consensus 82 tPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 82 CPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred CCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 3888 56777777778999999999999876554443333333 267876 589999998643321 22233433
Q ss_pred cC-----CeEEEeeCcCCC
Q 016762 175 QG-----TKVIFSNGQLGM 188 (383)
Q Consensus 175 ~g-----~~vi~iSa~~g~ 188 (383)
.+ ..++++|+..|.
T Consensus 161 ~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 161 YDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred cCCCccCCcEEEeeccccc
Confidence 33 457889998764
No 404
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.35 E-value=0.00084 Score=68.57 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=57.9
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHHH-----hcCC-CeEEEEEccCCCCHH--------H
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQW-----LGNR-KRILVLNREDMISMA--------D 164 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~----~~~~l~~~-----l~~k-~~ilVlNK~DL~~~~--------~ 164 (383)
-||| .++.+.+...+..+|..+.|+|+..+..+ ...+..+. ..+. ++++++||+|+.+.. .
T Consensus 92 tPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i 170 (447)
T PLN00043 92 APGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEI 170 (447)
T ss_pred CCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHH
Confidence 4888 77788888888999999999999874211 11222211 1245 568889999987321 1
Q ss_pred HHHHHHHHHHcC-----CeEEEeeCcCCCchh
Q 016762 165 RNAWATYFAKQG-----TKVIFSNGQLGMGTM 191 (383)
Q Consensus 165 ~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~ 191 (383)
.++...++.+.| ..++++|+..|.|+.
T Consensus 171 ~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 171 VKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred HHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 233334455555 457899999999874
No 405
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.35 E-value=0.00067 Score=73.53 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HHHHHHHHHH----HHc
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQ 175 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~w~~~l----~~~ 175 (383)
||| ..+..........+|++++|+|+.++......+..... .+.|+++++||+|+... +........+ ...
T Consensus 345 PGh-e~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~ 423 (787)
T PRK05306 345 PGH-EAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEW 423 (787)
T ss_pred CCC-ccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHh
Confidence 787 34445555678899999999999876443322222222 37899999999999642 2222211111 112
Q ss_pred C--CeEEEeeCcCCCchhhhhHHHHH
Q 016762 176 G--TKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 176 g--~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
| ..++++|+++|.|+.+|.+.+..
T Consensus 424 g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 424 GGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCCceEEEEeCCCCCCchHHHHhhhh
Confidence 2 46889999999999998776654
No 406
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.35 E-value=0.0003 Score=65.13 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEeEeecCCCChhHHHHhhhcCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
+|+++|..+.|||||+++|....
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~ 24 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASA 24 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998543
No 407
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.35 E-value=0.00017 Score=72.88 Aligned_cols=55 Identities=29% Similarity=0.370 Sum_probs=38.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcccc--------------------------------CCCCCceeEEEEEEe---CC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA--------------------------------APRPGVTRVLKWVRF---GK 262 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v--------------------------------~~~pgtT~~~~~~~~---~~ 262 (383)
++|+++|.+|+|||||+++|+....... +..-|.|.+.....+ +.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 3689999999999999999963321110 012366777654443 45
Q ss_pred cEEEEecCcc
Q 016762 263 DLEFLDSPGI 272 (383)
Q Consensus 263 ~i~l~DTpG~ 272 (383)
.+.++||||.
T Consensus 81 ~~~liDtPGh 90 (406)
T TIGR02034 81 KFIVADTPGH 90 (406)
T ss_pred EEEEEeCCCH
Confidence 6899999995
No 408
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.34 E-value=0.00052 Score=62.72 Aligned_cols=57 Identities=21% Similarity=0.174 Sum_probs=34.7
Q ss_pred CceEEeEeecCCCChhHHHHhhh-cCCccccCCCCCceeEEEEEEeC---CcEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~-~~~~~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~ 272 (383)
..++|+++|.+|||||||+|++. +.-.-...+..|.......+..+ -.+.+.||+|-
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~ 68 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc
Confidence 34789999999999999998654 32211222333333322222222 24678999995
No 409
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.33 E-value=0.00083 Score=63.21 Aligned_cols=107 Identities=14% Similarity=-0.051 Sum_probs=64.7
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-------------cCCCe
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-------------GNRKR 150 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-------------~~k~~ 150 (383)
....+-+||..-. +.+...-...+..+|++|+|||..++.+..+.. +..+. .+.|+
T Consensus 46 ~~~~l~I~Dt~G~---------~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~pi 116 (247)
T cd04143 46 EVYQLDILDTSGN---------HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPM 116 (247)
T ss_pred EEEEEEEEECCCC---------hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcE
Confidence 3456678885422 222222223577899999999987654432211 11111 25799
Q ss_pred EEEEEccCCCCHHH--HHHHHHHHHH-cCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 151 ILVLNREDMISMAD--RNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 151 ilVlNK~DL~~~~~--~~~w~~~l~~-~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
++|.||+|+..... ..+..+.+.. .+..++.+|+++|.|++++.+.+..+.
T Consensus 117 IivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 117 VICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999999974221 1222222222 245688999999999999877666543
No 410
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.33 E-value=0.00079 Score=61.63 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---hc--CCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---LG--NRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l~--~k~~ilVlNK~DL 159 (383)
.+.+.+||. ||+ .+........++.+|.+++|+|..++.+..+.. +..+ .. ..++++|.||+|+
T Consensus 51 ~~~l~i~Dt--------~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 51 RIKLQLWDT--------AGQ-ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEEEEeC--------Ccc-hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 356777874 332 444444456789999999999998764433211 1111 11 3457899999999
Q ss_pred CCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
...... ..-....+..+..++.+|+++|.|+.++.+.+.+
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred ccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 753211 1111222345677889999999999988665544
No 411
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.32 E-value=0.00082 Score=71.00 Aligned_cols=80 Identities=21% Similarity=0.144 Sum_probs=54.6
Q ss_pred hhcCeEEEEEecCCCCCCCcHHH-HHHh-cCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCcCCCchhhhhH
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l-~~~l-~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~ 195 (383)
+.+|+++.|+|+.... ++..+ .+.. .++|+++|+||+|+.+......-.+.+ +..|.+++++|+++|.|++++.+
T Consensus 71 ~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 71 EKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 4789999999997632 22222 2222 378999999999997543222112223 34577899999999999999877
Q ss_pred HHHHh
Q 016762 196 LAKAL 200 (383)
Q Consensus 196 ~l~~l 200 (383)
.+.+.
T Consensus 149 ~i~~~ 153 (591)
T TIGR00437 149 AIRKA 153 (591)
T ss_pred HHHHH
Confidence 76543
No 412
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.32 E-value=0.0005 Score=64.33 Aligned_cols=72 Identities=28% Similarity=0.379 Sum_probs=0.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--------------------------------C----
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------------------G---- 261 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------------------------~---- 261 (383)
+++++||-+++||||++|+|+|.. ......-.+|+.+..+.+ +
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~-~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~ 105 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTG 105 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCC-ccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcC
Q ss_pred -------------------CcEEEEecCccccCCCCcHHHHHHHHHhc
Q 016762 262 -------------------KDLEFLDSPGIIPMRISDQAAAIKLAICD 290 (383)
Q Consensus 262 -------------------~~i~l~DTpG~i~~~~~~~~~~~~la~~~ 290 (383)
.++.|+||||+......+....+...+..
T Consensus 106 ~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~ 153 (240)
T smart00053 106 TNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKD 153 (240)
T ss_pred CCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHH
No 413
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.00096 Score=60.27 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--------CCCeEEEEEccCCCCHHHH--HHHHHH
Q 016762 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMADR--NAWATY 171 (383)
Q Consensus 102 w~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--------~k~~ilVlNK~DL~~~~~~--~~w~~~ 171 (383)
|..+.+.++...+..++.+++-|+.|+|..+..+..+. ..|+. ..++++|.||+|+..+.++ +.-...
T Consensus 66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni--~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l 143 (207)
T KOG0078|consen 66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENI--RNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL 143 (207)
T ss_pred EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHH--HHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence 33334588899999999999999999998876665553 23432 5689999999999875432 222233
Q ss_pred HHHcCCeEEEeeCcCCCchhhh
Q 016762 172 FAKQGTKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 172 l~~~g~~vi~iSa~~g~Gi~~L 193 (383)
-.+.|...+.+||+.|.++.+.
T Consensus 144 A~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 144 AREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred HHHhCCeEEEccccCCCCHHHH
Confidence 4456888999999999998765
No 414
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.31 E-value=0.00058 Score=57.42 Aligned_cols=52 Identities=23% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762 147 NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 147 ~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+.|+++++||+|+............+...+ ..++.+|++.|.|+.++.+.++
T Consensus 108 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 679999999999987543333334444333 5688999999999988866553
No 415
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.30 E-value=0.0015 Score=63.16 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=62.9
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcH---------HHHHH---hcCCCeEEEEEccCC-CCHHHHHHHHHHHHHcC-C
Q 016762 112 KELKDQLKLMDVVIEVRDARIPLSTTHP---------LMDQW---LGNRKRILVLNREDM-ISMADRNAWATYFAKQG-T 177 (383)
Q Consensus 112 ~~l~~~idr~DlILeV~DaR~p~~~~~~---------~l~~~---l~~k~~ilVlNK~DL-~~~~~~~~w~~~l~~~g-~ 177 (383)
-++.+.|+||-+++.|+|...-.. .++ +++.+ +.+||.++|+||+|+ .+.++.+...+++.+.. .
T Consensus 229 ~~FLrHIERt~vL~hviD~s~~~~-~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~ 307 (369)
T COG0536 229 LRFLRHIERTRVLLHVIDLSPIDG-RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW 307 (369)
T ss_pred HHHHHHHHhhheeEEEEecCcccC-CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC
Confidence 355678999999999999863221 111 23332 348999999999994 56666777777776543 2
Q ss_pred e-EEEeeCcCCCchhhhhHHHHHhhhh
Q 016762 178 K-VIFSNGQLGMGTMKLSRLAKALASD 203 (383)
Q Consensus 178 ~-vi~iSa~~g~Gi~~L~~~l~~l~~~ 203 (383)
. .+++|+.++.|++.|.+.+.++...
T Consensus 308 ~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 308 EVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred CcceeeehhcccCHHHHHHHHHHHHHH
Confidence 2 2239999999999987776666544
No 416
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.30 E-value=0.001 Score=55.03 Aligned_cols=102 Identities=17% Similarity=0.024 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH-------HHhcCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-------QWLGNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~-------~~l~~k~~ilVlNK~DL 159 (383)
+.++.+||. ||+. .........+..+|.+++|+|+..+......... ....+.|.++++||+|+
T Consensus 44 ~~~~~l~D~--------~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 44 KVKLQIWDT--------AGQE-RFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEEEec--------CChH-HHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 456677774 3332 2233335678899999999999876544332211 11237899999999999
Q ss_pred CCHHHHHHH---HHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADRNAW---ATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~~~w---~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
......... .......+..++.+|+..+.|+.++.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 115 PEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred ccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 876543332 11222334678899999999988876544
No 417
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.29 E-value=0.0012 Score=67.58 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------C---cHHHHHHhcCCC-eEEEEEccCC--CC--HHH----
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------T---HPLMDQWLGNRK-RILVLNREDM--IS--MAD---- 164 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-------~---~~~l~~~l~~k~-~ilVlNK~DL--~~--~~~---- 164 (383)
||| .++.+.+...+..+|+++.|+|+..+..+ . ...+...+ +.| +|+++||+|. +. .+.
T Consensus 93 PGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi~~iiv~vNKmD~~~~~~~~~~~~~i 170 (446)
T PTZ00141 93 PGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GVKQMIVCINKMDDKTVNYSQERYDEI 170 (446)
T ss_pred CCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CCCeEEEEEEccccccchhhHHHHHHH
Confidence 887 56777888889999999999999876421 1 11122222 445 6789999994 32 222
Q ss_pred HHHHHHHHHHcC-----CeEEEeeCcCCCchhh
Q 016762 165 RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (383)
Q Consensus 165 ~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~ 192 (383)
.....+.+.+.| ..++++|+..|.|+.+
T Consensus 171 ~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 171 KKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 223334444444 4578999999999854
No 418
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.29 E-value=0.0013 Score=57.32 Aligned_cols=103 Identities=8% Similarity=0.021 Sum_probs=64.3
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh--------cCCCeEEEE
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL--------GNRKRILVL 154 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l--------~~k~~ilVl 154 (383)
.....+.+||. ||+ .+........+..+|.++.++|..++.+..... +..+. .+.|+++|.
T Consensus 51 ~~~~~l~i~D~--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 121 (170)
T cd04116 51 GHFVTLQIWDT--------AGQ-ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLG 121 (170)
T ss_pred CeEEEEEEEeC--------CCh-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 34456777873 343 444555556789999999999987664433221 11111 136899999
Q ss_pred EccCCCCHHH-HHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHH
Q 016762 155 NREDMISMAD-RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 155 NK~DL~~~~~-~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~ 196 (383)
||+|+..... .....++.++.+ ..++.+|+++|.|+.++.+.
T Consensus 122 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 165 (170)
T cd04116 122 NKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEE 165 (170)
T ss_pred ECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHH
Confidence 9999964321 122223334445 46788999999998877443
No 419
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.28 E-value=0.00074 Score=60.47 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=64.3
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHH---hcCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQW---LGNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~---l~~~---l~~k~~ilVlNK~ 157 (383)
.....++.+||..-. ..........+..+|+++.|||..++.+..+.+ +..+ ..+.|+++|.||+
T Consensus 44 ~~~~~~l~i~Dt~G~---------~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~ 114 (189)
T cd04134 44 DGLHIELSLWDTAGQ---------EEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKC 114 (189)
T ss_pred CCEEEEEEEEECCCC---------hhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 334467788885432 222222224578899999999988765543321 1222 2267999999999
Q ss_pred CCCCHHHHH--------------HHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762 158 DMISMADRN--------------AWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 158 DL~~~~~~~--------------~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
||....... .-.+...+.+ ..++.+|+++|.|+.++-+.+.
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~ 170 (189)
T cd04134 115 DLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAA 170 (189)
T ss_pred hhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHH
Confidence 997543211 0111122334 4678899999999988755444
No 420
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.27 E-value=0.00056 Score=59.75 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+.++.+||. ||+ .+........+..+|.+++|+|+..+.... ...+...+ .+.|+++++||+|+
T Consensus 57 ~~~~~~~D~--------~G~-~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (173)
T cd04155 57 GFKLNVWDI--------GGQ-RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL 127 (173)
T ss_pred CEEEEEEEC--------CCC-HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence 456777873 232 344445556789999999999987643221 11222222 25799999999999
Q ss_pred CCHHHHHHHHHHHHHc-----CCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADRNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~~~w~~~l~~~-----g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
..........+.+.-. ...++.+|+++|.|++++.+.+
T Consensus 128 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 128 ATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred ccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 7644333333322111 1246789999999988775443
No 421
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.27 E-value=0.00076 Score=58.14 Aligned_cols=53 Identities=38% Similarity=0.534 Sum_probs=34.2
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCC--CCCceeEEEEEEeC-C--cEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP--RPGVTRVLKWVRFG-K--DLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~--~pgtT~~~~~~~~~-~--~i~l~DTpG~ 272 (383)
||++||-++||||||++++.+.. ..-.. ..|.......+..+ . .+.+.||+|-
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 58 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ 58 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-ccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999754 22111 12222222223332 2 4789999995
No 422
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.27 E-value=0.00059 Score=60.77 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=34.2
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~ 272 (383)
.+|+++|.+|||||||++++.+.. ....-.|....+. ..+.++. .+.+.||+|-
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~ 59 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YPETYVPTVFENYTASFEIDEQRIELSLWDTSGS 59 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCc
Confidence 479999999999999999998653 2222122221111 1223332 4679999995
No 423
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.26 E-value=0.00029 Score=71.10 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..++|+++|.+|+|||||+++|++.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe
Confidence 3568999999999999999999863
No 424
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.25 E-value=0.0012 Score=62.87 Aligned_cols=89 Identities=24% Similarity=0.300 Sum_probs=62.3
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc---CCCeEEEEEccCCCCHHH-----------------HHHHHHHH
Q 016762 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---NRKRILVLNREDMISMAD-----------------RNAWATYF 172 (383)
Q Consensus 113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~---~k~~ilVlNK~DL~~~~~-----------------~~~w~~~l 172 (383)
.-+..++++|+|+.++|+.++-...++.+...+. +.|-++|+||+|..+... ..+|.+.|
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 3456799999999999999877777776555443 689999999999875431 12233333
Q ss_pred HHc----------C----CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 173 AKQ----------G----TKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 173 ~~~----------g----~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
... | ..++++|+..|.|+++|++.+-..+
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 211 1 2478899999999999888765443
No 425
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.22 E-value=0.0016 Score=68.79 Aligned_cols=84 Identities=25% Similarity=0.291 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-Hh-cCCCeEEEEEccCCCCH--H-HHHHHHHHHHHc---
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISM--A-DRNAWATYFAKQ--- 175 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~--~-~~~~w~~~l~~~--- 175 (383)
||| ..+..++...+..+|.++.|+|+..+.......+.. +. .+.|.++++||+|+... . ......+.|...
T Consensus 72 PGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~ 150 (594)
T TIGR01394 72 PGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGAD 150 (594)
T ss_pred CCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccc
Confidence 787 567778888899999999999998654322222222 22 36899999999998642 1 233333444322
Q ss_pred ----CCeEEEeeCcCCC
Q 016762 176 ----GTKVIFSNGQLGM 188 (383)
Q Consensus 176 ----g~~vi~iSa~~g~ 188 (383)
...++++|++.|.
T Consensus 151 ~e~l~~pvl~~SA~~g~ 167 (594)
T TIGR01394 151 DEQLDFPIVYASGRAGW 167 (594)
T ss_pred cccccCcEEechhhcCc
Confidence 3457889999885
No 426
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.21 E-value=0.0019 Score=59.72 Aligned_cols=106 Identities=13% Similarity=0.054 Sum_probs=64.0
Q ss_pred ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHH----HhcCCCeEEEEE
Q 016762 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLN 155 (383)
Q Consensus 82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~----~l~~k~~ilVlN 155 (383)
.+.....++-+||..-. ..+.......+..+|++|.|||..++.+..+. .+.. ...+.|+++|.|
T Consensus 43 ~~~~~~v~L~iwDt~G~---------e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgn 113 (222)
T cd04173 43 EIDKRRIELNMWDTSGS---------SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGC 113 (222)
T ss_pred EECCEEEEEEEEeCCCc---------HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 34445677888885332 33333333568999999999999877554332 1111 123679999999
Q ss_pred ccCCCCHHH-H-------------HHHHHHHHHcC-CeEEEeeCcCCC-chhhhhHH
Q 016762 156 REDMISMAD-R-------------NAWATYFAKQG-TKVIFSNGQLGM-GTMKLSRL 196 (383)
Q Consensus 156 K~DL~~~~~-~-------------~~w~~~l~~~g-~~vi~iSa~~g~-Gi~~L~~~ 196 (383)
|+||..... . +.-...-++.| ..++.+|++++. |+.++-..
T Consensus 114 K~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~ 170 (222)
T cd04173 114 KLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHV 170 (222)
T ss_pred CcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHH
Confidence 999954210 0 01111122345 368889999887 48776443
No 427
>PLN03127 Elongation factor Tu; Provisional
Probab=97.21 E-value=0.0023 Score=65.44 Aligned_cols=61 Identities=21% Similarity=0.138 Sum_probs=43.0
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCe-EEEEEccCCCCHHH
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKR-ILVLNREDMISMAD 164 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~-ilVlNK~DL~~~~~ 164 (383)
-||| +++.+.+..-+..+|++++|+|++.+......++..++. +.|. ++++||+|+++.++
T Consensus 131 tPGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 131 CPGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred CCCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH
Confidence 4888 456666666667899999999998776554444444332 5674 68899999996443
No 428
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.21 E-value=0.00076 Score=60.25 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=33.0
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeC---CcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~---~~i~l~DTpG~i 273 (383)
+|+++|.+|||||||+|++..... .-...+.+.... ..+.++ ..+.++||+|..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 60 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQE 60 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEECCEEEEEEEEECCCCh
Confidence 699999999999999999984331 111112111111 112222 236788999974
No 429
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=97.20 E-value=0.00012 Score=74.25 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=56.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCc-----cccCCCCCceeEEEEEE--eCCcEEEEecCccccCCC----CcHHHHHHH
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVR--FGKDLEFLDSPGIIPMRI----SDQAAAIKL 286 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~~~pgtT~~~~~~~--~~~~i~l~DTpG~i~~~~----~~~~~~~~l 286 (383)
.-|+.||.||+||+++||++..+-. ..-++.||||+....+. +...-.+.||||++.+.. -..++...+
T Consensus 310 ~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~q~~~llt~eEl~~v 389 (572)
T KOG1249|consen 310 GPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPNQILSLLTSEELLNV 389 (572)
T ss_pred cchHHhhhhhhccchhhhhhhhhhccchhccccCCCCcccccceeeeccccccceeecCCCccChhhhhhhccHHHhhhc
Confidence 4589999999999999999984322 23578999999976554 345667999999986521 123333344
Q ss_pred HHhcccccCccChH
Q 016762 287 AICDDIGERSYDVA 300 (383)
Q Consensus 287 a~~~~i~~~~~~~~ 300 (383)
+....+.++++...
T Consensus 390 ~p~~~lrprtf~vk 403 (572)
T KOG1249|consen 390 TPRRVLRPRTFRVK 403 (572)
T ss_pred CcccccccceEEcC
Confidence 44455555555444
No 430
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.19 E-value=0.0023 Score=71.17 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=65.5
Q ss_pred EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---
Q 016762 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--- 164 (383)
Q Consensus 90 ~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~--- 164 (383)
+.+||. ||| ..+..........+|+++.|+|+..+......+....+ .+.|.++|+||+|+.+...
T Consensus 528 i~fiDT--------PGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~ 598 (1049)
T PRK14845 528 LLFIDT--------PGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISE 598 (1049)
T ss_pred EEEEEC--------CCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcccccccc
Confidence 677774 666 44444334556779999999999875544433332332 2689999999999975211
Q ss_pred ---------------HHHH-------HHHHHHcC---------------CeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762 165 ---------------RNAW-------ATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (383)
Q Consensus 165 ---------------~~~w-------~~~l~~~g---------------~~vi~iSa~~g~Gi~~L~~~l~~l~~ 202 (383)
..+. ...+.+.| ..++++||++|.|+..|...+..+.+
T Consensus 599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 0110 00112221 35788999999999999877655543
No 431
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.18 E-value=0.00048 Score=72.77 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=39.1
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccc--------cC------CCCCceeEEEEEEe-----C---CcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCP--------AA------PRPGVTRVLKWVRF-----G---KDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~--------v~------~~pgtT~~~~~~~~-----~---~~i~l~DTpG~i~ 274 (383)
+++++|.+|+|||||+++|+....+. +. ...|+|.+.+.+.+ + ..+.|+||||...
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 69999999999999999998542111 11 12477777544332 2 2478999999974
No 432
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00082 Score=65.22 Aligned_cols=95 Identities=20% Similarity=0.366 Sum_probs=66.5
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC---CCcHHHHHHhcCCCeEEEEEccCCCCHHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---TTHPLMDQWLGNRKRILVLNREDMISMAD 164 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~---~~~~~l~~~l~~k~~ilVlNK~DL~~~~~ 164 (383)
=+++|.|. ||| +.+.+.|-.=..-||+.+.++|||.+.. .++..+..+++-+.+++.+||+||++-.+
T Consensus 86 RkFIiADT--------PGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 86 RKFIIADT--------PGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ceEEEecC--------CcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH
Confidence 34666663 888 4444444444688999999999997654 34566888888899999999999996432
Q ss_pred --HH----HHHHHHHHcC---CeEEEeeCcCCCchh
Q 016762 165 --RN----AWATYFAKQG---TKVIFSNGQLGMGTM 191 (383)
Q Consensus 165 --~~----~w~~~l~~~g---~~vi~iSa~~g~Gi~ 191 (383)
-+ .+..+..++| ..++++|+..|.++.
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 22 2333334455 467899999987764
No 433
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.18 E-value=0.00086 Score=60.42 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=36.9
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|..+||||||++++.... ......|..+.+. ..+.++. .+.+.||+|--
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGS-TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4789999999999999999998643 2111122333333 2333332 46789999974
No 434
>PRK10218 GTP-binding protein; Provisional
Probab=97.18 E-value=0.00066 Score=71.73 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=40.2
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccc---------------cCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCP---------------AAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~---------------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
.+|+++|..++|||||+++|+...... .....|+|.......+ +..+.++||||.-.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 369999999999999999998632211 1224577766544333 44688999999753
No 435
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.16 E-value=0.0031 Score=66.58 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=62.9
Q ss_pred EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---
Q 016762 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--- 164 (383)
Q Consensus 90 ~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~--- 164 (383)
+.+||. ||| ..+.......+..+|++++|+|+..+......+...++ .+.|+++++||+|+.+...
T Consensus 73 i~~iDT--------PG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~ 143 (586)
T PRK04004 73 LLFIDT--------PGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTE 143 (586)
T ss_pred EEEEEC--------CCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhc
Confidence 556774 666 44555555667889999999999875433322222222 3789999999999863210
Q ss_pred ---------------HH-------HHHHHHHHcC---------------CeEEEeeCcCCCchhhhhHHHH
Q 016762 165 ---------------RN-------AWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 165 ---------------~~-------~w~~~l~~~g---------------~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.. ....++.+.| ..++++|+.+|.|+.+|.+.+.
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 00 0111222222 3578899999999988866554
No 436
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.16 E-value=0.00081 Score=58.83 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=62.7
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~------l~~~l~~k~~ilVlNK~ 157 (383)
......+.+||..- | ..........+..+|+++.++|..++.+..+.. +.....+.|+++|.||+
T Consensus 45 ~~~~~~l~i~Dt~G---~------~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 115 (175)
T cd01870 45 DGKQVELALWDTAG---Q------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 115 (175)
T ss_pred CCEEEEEEEEeCCC---c------hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence 33456678888432 1 222222224578999999999987654332221 11112378999999999
Q ss_pred CCCCHHHHHH-----------HH---HHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762 158 DMISMADRNA-----------WA---TYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 158 DL~~~~~~~~-----------w~---~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
|+.+...... |. +...+.+ ..++.+|++.|.|+.++.+.+.
T Consensus 116 Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 171 (175)
T cd01870 116 DLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMAT 171 (175)
T ss_pred hcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHH
Confidence 9875322110 11 1112223 3688899999999988865543
No 437
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.15 E-value=0.0014 Score=71.11 Aligned_cols=81 Identities=21% Similarity=0.084 Sum_probs=57.1
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCcCCCchhhhhH
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~ 195 (383)
+.+|+++.|+|+.+.. ++..+... . .++|+++++||+|+..+.......+.+ ++.|.+++++|+++|.|++++.+
T Consensus 84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 5899999999997643 23322222 2 378999999999997554332222333 34678899999999999999887
Q ss_pred HHHHhh
Q 016762 196 LAKALA 201 (383)
Q Consensus 196 ~l~~l~ 201 (383)
.+.+..
T Consensus 162 ~I~~~~ 167 (772)
T PRK09554 162 AIDRHQ 167 (772)
T ss_pred HHHHhh
Confidence 776553
No 438
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.003 Score=63.05 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=69.5
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc---HHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHH----c
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK----Q 175 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~---~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~----~ 175 (383)
-||| .++.+.+-.-+.-+|..++|+|+.++....- ..+.++++.+..++|+||+|.+++..+....+.... .
T Consensus 57 vpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~ 135 (447)
T COG3276 57 VPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLA 135 (447)
T ss_pred CCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccc
Confidence 4788 4445555555778899999999976555443 334455566777999999999987654443332221 1
Q ss_pred CCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762 176 GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (383)
Q Consensus 176 g~~vi~iSa~~g~Gi~~L~~~l~~l~~ 202 (383)
..+++.+|++.|.|+.+|++.+.++..
T Consensus 136 ~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 136 NAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccccccccccCCCHHHHHHHHHHhhh
Confidence 235677899999999999999998875
No 439
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0022 Score=61.57 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=64.4
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----CCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHH----HHHHHH
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----TTHPLMDQWLGNRKRILVLNREDMISMADRNAW----ATYFAK 174 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~----~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w----~~~l~~ 174 (383)
.||| +-++..+..=..-.|-.|+|++|..|.- ..+..-.+.++-+.++++-||+||++++...+- .++.+.
T Consensus 93 aPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkG 171 (415)
T COG5257 93 APGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKG 171 (415)
T ss_pred CCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcc
Confidence 5898 4445544433445577788888875432 222223344567899999999999998754322 222221
Q ss_pred ---cCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 175 ---QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 175 ---~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
.+.+++++|+.++.+++.|.+.+.+..
T Consensus 172 t~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 172 TVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred cccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 235799999999999999877776553
No 440
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0014 Score=56.00 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=88.8
Q ss_pred eEEeecCCCCCCCccccchh-hh-ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC
Q 016762 60 SSWHGGNSNNSNGSIEAYEE-EC-DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT 137 (383)
Q Consensus 60 ~~~~~~~~~~~~~~iG~Gk~-E~-~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~ 137 (383)
+++|-.--|--.--||-++. .. .+....+.+-|||... +++++.....+.+.++.++.|.|.....+..
T Consensus 26 rftqglfppgqgatigvdfmiktvev~gekiklqiwdtag---------qerfrsitqsyyrsahalilvydiscqpsfd 96 (213)
T KOG0095|consen 26 RFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG---------QERFRSITQSYYRSAHALILVYDISCQPSFD 96 (213)
T ss_pred hhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc---------hHHHHHHHHHHhhhcceEEEEEecccCcchh
Confidence 67777776766667888887 22 6777888999999643 3888888889999999999999998777766
Q ss_pred cH-----HHHHHhcCC-CeEEEEEccCCCCHHHHH-HHHHHHHHc-CCeEEEeeCcCCCchhhh
Q 016762 138 HP-----LMDQWLGNR-KRILVLNREDMISMADRN-AWATYFAKQ-GTKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 138 ~~-----~l~~~l~~k-~~ilVlNK~DL~~~~~~~-~w~~~l~~~-g~~vi~iSa~~g~Gi~~L 193 (383)
+. +++++..++ -.|+|.||+|+.+..++. ...+.|... ......+|++...++++|
T Consensus 97 clpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 97 CLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred hhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 52 344443333 357899999999876543 333445433 233456788888888776
No 441
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.12 E-value=0.00095 Score=60.85 Aligned_cols=54 Identities=30% Similarity=0.363 Sum_probs=35.1
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC---CcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~i~l~DTpG~i 273 (383)
.|.++|..|||||||++++.... ....-.+..+.+. ..+.++ -.+.+.||+|--
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 58999999999999999998543 2211123333333 233443 246799999963
No 442
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.12 E-value=0.00077 Score=62.41 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=33.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~ 272 (383)
.+|++||.+|||||||++++.+.. ....-.|.+.-+. ..+.++. .+.+.||+|-
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~ 59 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-YPGSYVPTVFENYTASFEIDKRRIELNMWDTSGS 59 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCccCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence 479999999999999999998643 2212222221111 1223322 4678999996
No 443
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.003 Score=64.46 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=62.8
Q ss_pred chHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcC----
Q 016762 104 PGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQG---- 176 (383)
Q Consensus 104 Pgh~~~~~~~l~-~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g---- 176 (383)
|||.. + ..|+ +=-+-+|++++|+|+.++....-.+-.+.. .+-|.++++||+|..+..- ......+.+.|
T Consensus 63 PGHeA-F-t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E 139 (509)
T COG0532 63 PGHEA-F-TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPE 139 (509)
T ss_pred CcHHH-H-HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHh
Confidence 88832 2 2222 335889999999999887665544322222 2789999999999974321 11122233333
Q ss_pred -----CeEEEeeCcCCCchhhhhHHHHHhhhh
Q 016762 177 -----TKVIFSNGQLGMGTMKLSRLAKALASD 203 (383)
Q Consensus 177 -----~~vi~iSa~~g~Gi~~L~~~l~~l~~~ 203 (383)
..++++||++|.|+.+|...+--+++.
T Consensus 140 ~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 140 EWGGDVIFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred hcCCceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 246789999999999997776555443
No 444
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.10 E-value=0.00066 Score=58.57 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=73.5
Q ss_pred ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEE
Q 016762 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLN 155 (383)
Q Consensus 82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~-~k~~ilVlN 155 (383)
-++...+++-|||..-+ +++-..-.-+.+.++-.|.|+|..+..+.... ++..+++ ...+++|.|
T Consensus 56 n~ed~ra~L~IWDTAGQ---------ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGN 126 (218)
T KOG0088|consen 56 NVEDCRADLHIWDTAGQ---------ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGN 126 (218)
T ss_pred ccccceeeeeeeeccch---------HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecC
Confidence 34557789999996443 44333333567899999999998776555432 2333343 467899999
Q ss_pred ccCCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 156 REDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 156 K~DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
|+||-....+ ++-..|-+..|...+.+|++.+.|+.+|-+.+-
T Consensus 127 KiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 127 KIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred cccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 9999765432 233345556677788899999999998865543
No 445
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.09 E-value=0.004 Score=54.81 Aligned_cols=104 Identities=14% Similarity=0.019 Sum_probs=63.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||. ||+ .++..........+|.++.++|..+..+.... .+..++ .+.|.++|.||+|+
T Consensus 48 ~~~~~l~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 118 (180)
T cd04137 48 DYHLEIVDT--------AGQ-DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred EEEEEEEEC--------CCh-HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence 455677874 333 23333333567889999999998754322111 111111 25699999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
...+. ...+.......+..++.+|++.+.|+.++.+.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 119 HTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred hhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 74321 12222333444567889999999999887655543
No 446
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0034 Score=64.10 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=63.4
Q ss_pred chHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHc-----
Q 016762 104 PGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ----- 175 (383)
Q Consensus 104 Pgh~~~~~~~l~-~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~----- 175 (383)
|||++ + ..|+ +=..-+|+|+.|+.+.++....-.+-.... .+.|+++.+||+|.... ........+...
T Consensus 209 PGHaA-F-~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E 285 (683)
T KOG1145|consen 209 PGHAA-F-SAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVE 285 (683)
T ss_pred CcHHH-H-HHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHH
Confidence 89943 2 3333 446789999999999877665443322222 27899999999996422 222223333333
Q ss_pred --C--CeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762 176 --G--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (383)
Q Consensus 176 --g--~~vi~iSa~~g~Gi~~L~~~l~~l~~ 202 (383)
| ..++++|+++|.|+..|.+.+--++.
T Consensus 286 ~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 286 DLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 3 35789999999999999776655443
No 447
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.07 E-value=0.00074 Score=59.93 Aligned_cols=55 Identities=25% Similarity=0.510 Sum_probs=37.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~ 272 (383)
+..+|.++|.+|+||||++|.|.......+.++-|.. ...+.. +..+.+.|.+|=
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~--~~~i~~~~~~~~~~d~gG~ 68 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN--IEEIKYKGYSLTIWDLGGQ 68 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE--EEEEEETTEEEEEEEESSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccc--cceeeeCcEEEEEEecccc
Confidence 4578999999999999999999865433333322222 233333 346889999985
No 448
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.07 E-value=0.0029 Score=64.62 Aligned_cols=79 Identities=23% Similarity=0.188 Sum_probs=52.8
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh
Q 016762 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (383)
Q Consensus 114 l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~ 192 (383)
....++.+|++++|+|+..+.+..+..+.... .++|+++|+||+|+... ....+ ....+..++.+|+++ .|+.+
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~~~~---~~~~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SLEFF---VSSKVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-chhhh---hhhcCCceEEEEEec-CCHHH
Confidence 34678999999999999877654443233332 37899999999999754 22221 223455678899987 47766
Q ss_pred hhHHH
Q 016762 193 LSRLA 197 (383)
Q Consensus 193 L~~~l 197 (383)
+.+.+
T Consensus 351 ~~~~L 355 (442)
T TIGR00450 351 LVDLL 355 (442)
T ss_pred HHHHH
Confidence 54443
No 449
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.06 E-value=0.0014 Score=59.75 Aligned_cols=56 Identities=30% Similarity=0.338 Sum_probs=35.5
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeC------C--cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG------K--DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~------~--~i~l~DTpG~i 273 (383)
++|.++|-++||||||+|.+.+..... ..++.|.+.....+.++ . .+.+.||+|--
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 369999999999999999999654211 11222332333333332 2 36799999973
No 450
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.06 E-value=0.0012 Score=57.76 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=56.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (383)
.+..+.+||. ||+ .+........++.+|.+++|+|+.++.+..+ ..+..++ .++|+++|+||+|
T Consensus 41 ~~~~~~i~D~--------~G~-~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~D 111 (167)
T cd04161 41 DKYEVCIFDL--------GGG-ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQD 111 (167)
T ss_pred CCEEEEEEEC--------CCc-HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCC
Confidence 3566778874 333 3444445578999999999999987643221 1233332 2679999999999
Q ss_pred CCCHHHHHHHHHHH--H----HcC--CeEEEeeCcCC
Q 016762 159 MISMADRNAWATYF--A----KQG--TKVIFSNGQLG 187 (383)
Q Consensus 159 L~~~~~~~~w~~~l--~----~~g--~~vi~iSa~~g 187 (383)
+..........+.+ . +.+ ..++.+|+++|
T Consensus 112 l~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 112 KKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred CcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 96543222222222 1 112 34566899988
No 451
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.03 E-value=0.00098 Score=60.59 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+|+++|..++|||||+.+|++.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999754
No 452
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.99 E-value=0.00092 Score=58.43 Aligned_cols=81 Identities=12% Similarity=0.033 Sum_probs=51.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCCCCHHHH--------------HHHHHHHHHc
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDMISMADR--------------NAWATYFAKQ 175 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL~~~~~~--------------~~w~~~l~~~ 175 (383)
..+..+|+++.++|..++.+..+. . +.....+.|+++|.||+|+.+.... ..-....++.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI 146 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 357889999999998876543322 1 1112236899999999998643211 0111122334
Q ss_pred CC-eEEEeeCcCCCchhhhhHH
Q 016762 176 GT-KVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 176 g~-~vi~iSa~~g~Gi~~L~~~ 196 (383)
+. .++.+|+++|.|++++.+.
T Consensus 147 ~~~~~~e~Sa~~~~gi~~~f~~ 168 (174)
T cd04135 147 GAHCYVECSALTQKGLKTVFDE 168 (174)
T ss_pred CCCEEEEecCCcCCCHHHHHHH
Confidence 53 5788999999999887543
No 453
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.99 E-value=0.0012 Score=67.58 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=41.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc------------------------------ccCCCCCceeEEEEEEe---CC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---GK 262 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~------------------------------~v~~~pgtT~~~~~~~~---~~ 262 (383)
..++|+++|..++|||||+.+|+..... ..+...|+|.+.....+ +.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 4578999999999999999998741100 01123578888765544 34
Q ss_pred cEEEEecCccc
Q 016762 263 DLEFLDSPGII 273 (383)
Q Consensus 263 ~i~l~DTpG~i 273 (383)
.+.|+||||-.
T Consensus 86 ~i~lIDtPGh~ 96 (446)
T PTZ00141 86 YFTIIDAPGHR 96 (446)
T ss_pred EEEEEECCChH
Confidence 68899999954
No 454
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.98 E-value=0.0015 Score=58.06 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=34.3
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC---CcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~i~l~DTpG~i 273 (383)
++|.++|.++||||||++++.... ....-.| |.-+.. .+.++ -++.+.||+|--
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~-Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~ 60 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIP-TVFDNFSANVSVDGNTVNLGLWDTAGQE 60 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCC-cceeeeEEEEEECCEEEEEEEEECCCCc
Confidence 479999999999999999999643 2211122 111111 12232 246799999964
No 455
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.98 E-value=0.005 Score=54.57 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=64.0
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C-CCeEEEEEccCCCCHHHHHHHHHHHHHc--CC
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ--GT 177 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~-k~~ilVlNK~DL~~~~~~~~w~~~l~~~--g~ 177 (383)
+||| .++.-.+.-..+.++-.+.++|...+.......+..++. + .|.++..||.||-+..-.+...+++... ..
T Consensus 75 tPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~ 153 (187)
T COG2229 75 TPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV 153 (187)
T ss_pred CCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence 4787 666666667788899899999999888875555555553 3 7899999999997543333444445443 57
Q ss_pred eEEEeeCcCCCchhh
Q 016762 178 KVIFSNGQLGMGTMK 192 (383)
Q Consensus 178 ~vi~iSa~~g~Gi~~ 192 (383)
.++.+++..+.|..+
T Consensus 154 ~vi~~~a~e~~~~~~ 168 (187)
T COG2229 154 PVIEIDATEGEGARD 168 (187)
T ss_pred ceeeeecccchhHHH
Confidence 788888988877654
No 456
>PLN03126 Elongation factor Tu; Provisional
Probab=96.98 E-value=0.0045 Score=63.72 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=55.5
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH-----HHHHHHHH
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAK 174 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~-----~w~~~l~~ 174 (383)
-||| +++.+.+..-+..+|+++.|+|+..+......+...+. .+.| .++++||+|+++.++.. +..+++.+
T Consensus 151 tPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~ 229 (478)
T PLN03126 151 CPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSS 229 (478)
T ss_pred CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHh
Confidence 4898 55667777778899999999999876544333333322 2566 67889999998754321 22233444
Q ss_pred cC-----CeEEEeeCcCCC
Q 016762 175 QG-----TKVIFSNGQLGM 188 (383)
Q Consensus 175 ~g-----~~vi~iSa~~g~ 188 (383)
.| ..++++|+..|.
T Consensus 230 ~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 230 YEFPGDDIPIISGSALLAL 248 (478)
T ss_pred cCCCcCcceEEEEEccccc
Confidence 33 457788887763
No 457
>PTZ00416 elongation factor 2; Provisional
Probab=96.97 E-value=0.0013 Score=72.36 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=26.0
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCcee
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~ 253 (383)
+|+++|..++|||||+++|+....+......|.|+
T Consensus 21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~ 55 (836)
T PTZ00416 21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDAR 55 (836)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCcee
Confidence 69999999999999999998754433333444443
No 458
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.97 E-value=0.0017 Score=60.61 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=34.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeC---CcEEEEecCcc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGI 272 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~---~~i~l~DTpG~ 272 (383)
..+|.+||-++||||||++++.+.. ......|.+.-+. ..+.++ -.+.|.||+|-
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~-F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~ 71 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFENYTAGLETEEQRVELSLWDTSGS 71 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC-CCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCc
Confidence 4689999999999999999998643 2111112111111 112222 24789999995
No 459
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.97 E-value=0.0011 Score=69.88 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=37.6
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccc-----c----------CCCCCceeEEEEEE---eCCcEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCP-----A----------APRPGVTRVLKWVR---FGKDLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~-----v----------~~~pgtT~~~~~~~---~~~~i~l~DTpG~i 273 (383)
+|+|+|..++|||||+++|+...... + +..-|+|....... -+..+.++||||..
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~ 75 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA 75 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH
Confidence 59999999999999999998532111 1 11236666543222 25578999999985
No 460
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0015 Score=66.63 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=65.8
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HHHHHh-cCCCeEEEEEccCCCC--HHHHH-HHHHHHHHcCC
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-GNRKRILVLNREDMIS--MADRN-AWATYFAKQGT 177 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~l~~~l-~~k~~ilVlNK~DL~~--~~~~~-~w~~~l~~~g~ 177 (383)
-||| ..+.-+..+.+.-||-+|.|+||..+....-. .+..++ .+..+|.|+||+|+-. ++.+. ...+.|.-...
T Consensus 132 TPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 132 TPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA 210 (650)
T ss_pred CCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc
Confidence 4898 67788888899999999999999765432211 122222 4788999999999963 33333 23334444456
Q ss_pred eEEEeeCcCCCchhhhhHHH
Q 016762 178 KVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 178 ~vi~iSa~~g~Gi~~L~~~l 197 (383)
+++++|++.|.|+.++.+.+
T Consensus 211 ~~i~vSAK~G~~v~~lL~AI 230 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAI 230 (650)
T ss_pred ceEEEEeccCccHHHHHHHH
Confidence 89999999999998875443
No 461
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.91 E-value=0.0022 Score=57.42 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=34.6
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE-E-EEEEeCC---cEEEEecCcc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-L-KWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~-~-~~~~~~~---~i~l~DTpG~ 272 (383)
.++|.++|-++||||||++++.... . .....-|.-+ . ..+.++. .+.+.||+|-
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~-f-~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC-F-PENYVPTVFENYTASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC-C-CCccCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 4689999999999999999998643 1 1221111111 1 1223332 4789999996
No 462
>PRK10218 GTP-binding protein; Provisional
Probab=96.91 E-value=0.0045 Score=65.54 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCH--
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISM-- 162 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~-- 162 (383)
+..+.+||. ||| ..+...+...+..+|.+++|+|+..+.......+... . .+.|.++++||+|+...
T Consensus 67 ~~~inliDT--------PG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~ 137 (607)
T PRK10218 67 DYRINIVDT--------PGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARP 137 (607)
T ss_pred CEEEEEEEC--------CCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCch
Confidence 445566663 555 4556667778999999999999987543332222222 2 37899999999998532
Q ss_pred -HHHHHHHHHHHH-------cCCeEEEeeCcCCCc
Q 016762 163 -ADRNAWATYFAK-------QGTKVIFSNGQLGMG 189 (383)
Q Consensus 163 -~~~~~w~~~l~~-------~g~~vi~iSa~~g~G 189 (383)
+......+.|.. ....++++|+.+|.+
T Consensus 138 ~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 138 DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 233444444432 124588999999874
No 463
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0057 Score=54.41 Aligned_cols=120 Identities=11% Similarity=0.018 Sum_probs=80.2
Q ss_pred EeecCCCCCCCccccchh--hhccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH
Q 016762 62 WHGGNSNNSNGSIEAYEE--ECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP 139 (383)
Q Consensus 62 ~~~~~~~~~~~~iG~Gk~--E~~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~ 139 (383)
+-+|-.|.--.-||-.+- +.-+.+..+.+-|||..- |+++......+.+.+.-.|+|+|.....+....
T Consensus 27 ~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG---------qe~frsv~~syYr~a~GalLVydit~r~sF~hL 97 (216)
T KOG0098|consen 27 TDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG---------QESFRSVTRSYYRGAAGALLVYDITRRESFNHL 97 (216)
T ss_pred hccCccccccceeeeeeceeEEEEcCceEEEEEEecCC---------cHHHHHHHHHHhccCcceEEEEEccchhhHHHH
Confidence 334444444444555444 336777888888998543 377888888999999999999997654444332
Q ss_pred --HHHHHhc----CCCeEEEEEccCCCCHH-----HHHHHHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762 140 --LMDQWLG----NRKRILVLNREDMISMA-----DRNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 140 --~l~~~l~----~k~~ilVlNK~DL~~~~-----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L 193 (383)
-|+++.+ +..++++.||+||...+ +-+.| -++.|.-...+|++++.|+++.
T Consensus 98 ~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaF---A~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 98 TSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAF---AREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred HHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHH---HHHcCceeehhhhhhhhhHHHH
Confidence 1333322 56788999999997554 33334 3446666667899999998765
No 464
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.85 E-value=0.002 Score=67.11 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=19.4
Q ss_pred eEEeEeecCCCChhHHHHhhh
Q 016762 218 VRAGIVGYPNVGKSSLINRLL 238 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~ 238 (383)
.+|+|+|.+|+|||||+++|+
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll 32 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVL 32 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 369999999999999999985
No 465
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0011 Score=69.42 Aligned_cols=83 Identities=20% Similarity=0.074 Sum_probs=59.1
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
++.|+|+-|+||.+-......-++.+..++|.++++|++|.+.+...+--.+.+ +..|.+++++++++|.|++++++.+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 677999999999764333333333334489999999999998765332222233 3568999999999999999887766
Q ss_pred HHhh
Q 016762 198 KALA 201 (383)
Q Consensus 198 ~~l~ 201 (383)
.++.
T Consensus 160 ~~~~ 163 (653)
T COG0370 160 IELA 163 (653)
T ss_pred HHhc
Confidence 5543
No 466
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.82 E-value=0.002 Score=56.06 Aligned_cols=52 Identities=29% Similarity=0.249 Sum_probs=32.7
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~i 273 (383)
+|+++|.+|||||||++++....-. ...+ +|-. ...+.++. .+.+.||+|--
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~--~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV--QLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC--CCCC-CCccceEEEEEECCEEEEEEEEECCCCC
Confidence 6899999999999999987754311 1111 1111 12233332 36789999984
No 467
>PLN00023 GTP-binding protein; Provisional
Probab=96.81 E-value=0.0031 Score=61.44 Aligned_cols=56 Identities=32% Similarity=0.433 Sum_probs=37.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC----------------cEEEEecCcc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK----------------DLEFLDSPGI 272 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~----------------~i~l~DTpG~ 272 (383)
.++|.++|..+||||||++.+.+.... ...++-|.+.....+.++. .+.|.||+|=
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 478999999999999999999965421 1223334443333333321 2789999995
No 468
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.80 E-value=0.003 Score=56.68 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=34.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i 273 (383)
.++|.++|-.|||||||++++.... ..-...|...-+. ..+.++. .+.+.||+|--
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA-FPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CCcCCCCceEeeeEEEEEECCEEEEEEEEECCCch
Confidence 3689999999999999999998543 1111111111111 1122332 46789999963
No 469
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.76 E-value=0.0049 Score=53.63 Aligned_cols=99 Identities=14% Similarity=0.007 Sum_probs=60.8
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEEc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLNR 156 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l-----~~k~~ilVlNK 156 (383)
......+.+||..-+.. ......+|.++.|+|..++.+..+. . +..+. .+.|+++|.||
T Consensus 43 ~~~~~~l~i~D~~g~~~--------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK 108 (158)
T cd04103 43 DGQSHLLLIRDEGGAPD--------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQ 108 (158)
T ss_pred CCEEEEEEEEECCCCCc--------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeH
Confidence 33345678888543321 1234679999999999876665442 1 22221 24689999999
Q ss_pred cCCCC--HH-HHHHHHHHHH-Hc-CCeEEEeeCcCCCchhhhhHH
Q 016762 157 EDMIS--MA-DRNAWATYFA-KQ-GTKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 157 ~DL~~--~~-~~~~w~~~l~-~~-g~~vi~iSa~~g~Gi~~L~~~ 196 (383)
.||.. .. ......+.+. +. +..++.+|+++|.|+.++-+.
T Consensus 109 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 109 DAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred HHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99842 12 1122222232 33 367889999999999877443
No 470
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.004 Score=53.23 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE 157 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~ 157 (383)
..+++-|||..- |+++......+++.++-+|..+|..+..+... ++.|. .+.++|+|.|||
T Consensus 68 kRiklQiwDTag---------qEryrtiTTayyRgamgfiLmyDitNeeSf~s--vqdw~tqIktysw~naqvilvgnKC 136 (193)
T KOG0093|consen 68 KRIKLQIWDTAG---------QERYRTITTAYYRGAMGFILMYDITNEESFNS--VQDWITQIKTYSWDNAQVILVGNKC 136 (193)
T ss_pred cEEEEEEEeccc---------chhhhHHHHHHhhccceEEEEEecCCHHHHHH--HHHHHHHheeeeccCceEEEEeccc
Confidence 458899999532 46777777788999999999999876544333 33332 168999999999
Q ss_pred CCCCHHHHH--HHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 158 DMISMADRN--AWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 158 DL~~~~~~~--~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
|+-+...+. .-.....++|...+..|++.+.+++++-+.+
T Consensus 137 Dmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 137 DMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred CCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 997765321 2223345668888889999999988774433
No 471
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.73 E-value=0.0097 Score=55.11 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=49.5
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeE-EEEEccCCCCHH-HHHHHHHHHHH-------cCCeEE
Q 016762 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMA-DRNAWATYFAK-------QGTKVI 180 (383)
Q Consensus 112 ~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~i-lVlNK~DL~~~~-~~~~w~~~l~~-------~g~~vi 180 (383)
..+.+.++.+|++++|+|+..+.......+..++. ++|.+ +|+||+|+.... ......+.+++ .+.+++
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~ 174 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLF 174 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 34445678999999999998776665555555443 56754 599999998432 22222222211 236789
Q ss_pred EeeCcCC
Q 016762 181 FSNGQLG 187 (383)
Q Consensus 181 ~iSa~~g 187 (383)
++|+++.
T Consensus 175 ~iSa~~~ 181 (225)
T cd01882 175 YLSGIVH 181 (225)
T ss_pred EEeeccC
Confidence 9998765
No 472
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.024 Score=49.16 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH-----hcCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW-----LGNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~-----l~~k~~ilVlNK~DL 159 (383)
.+.+-+||.. .+++++.......+.+.-.|.|||.....+..+.. +.++ ..+-.++++.||+||
T Consensus 66 rihLQlWDTA---------GQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL 136 (219)
T KOG0081|consen 66 RIHLQLWDTA---------GQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL 136 (219)
T ss_pred EEEEeeeccc---------cHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch
Confidence 3456666643 24788887778888899999999987655554421 1111 125568999999999
Q ss_pred CCHHHHHH--HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMADRNA--WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~~~~--w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+..++.. -...-.+.|.+.+.+|+-+|.++++-.+.+-.+
T Consensus 137 ~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 137 EDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred hhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHH
Confidence 87665432 222334568889999999999988765544433
No 473
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.006 Score=60.54 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=82.4
Q ss_pred cccchhHHHhhcCCee-eE--EeecCCCCCCCccccchh-hh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHH
Q 016762 44 SLSSSAPIIQTVGGKQ-SS--WHGGNSNNSNGSIEAYEE-EC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKD 116 (383)
Q Consensus 44 ~~~~~~~~~~~~g~~v-~~--~~~~~~~~~~~~iG~Gk~-E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~ 116 (383)
++.++...|+.+|-+- .+ +-.+.+-.+. .|+- +. ..+.....+=|+| .||| +.+.+.+-.
T Consensus 38 tmeK~~~ea~~~gK~sf~fawvlD~tkeERe----rGvTi~~~~~~fet~k~~~tIiD--------aPGH-rdFvknmIt 104 (428)
T COG5256 38 TMEKLEKEAKELGKESFKFAWVLDKTKEERE----RGVTIDVAHSKFETDKYNFTIID--------APGH-RDFVKNMIT 104 (428)
T ss_pred HHHHHHHHHHhcCCCceEEEEEecCChhHHh----cceEEEEEEEEeecCCceEEEee--------CCch-HHHHHHhhc
Confidence 7888899999898885 22 2111100000 0111 11 1122222334444 4886 777777777
Q ss_pred HhhhcCeEEEEEecCCCCCC----------CcHHHHHHhcCCCeEEEEEccCCCCHHH--HH----HHHHHHHHcC----
Q 016762 117 QLKLMDVVIEVRDARIPLST----------THPLMDQWLGNRKRILVLNREDMISMAD--RN----AWATYFAKQG---- 176 (383)
Q Consensus 117 ~idr~DlILeV~DaR~p~~~----------~~~~l~~~l~~k~~ilVlNK~DL~~~~~--~~----~w~~~l~~~g---- 176 (383)
-...+|+.++|+|++.+..+ ....|.+.++-..+|+++||+|+++-++ .+ .....++..|
T Consensus 105 GasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~ 184 (428)
T COG5256 105 GASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPK 184 (428)
T ss_pred chhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 78999999999999987321 2234566667788999999999996321 11 1112222334
Q ss_pred -CeEEEeeCcCCCchhhh
Q 016762 177 -TKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 177 -~~vi~iSa~~g~Gi~~L 193 (383)
..++++|+..|.++.+.
T Consensus 185 ~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 185 DVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CCeEEecccccCCccccc
Confidence 34788999999887654
No 474
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.72 E-value=0.0015 Score=70.73 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=37.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcc---------c-c-----CCCCCceeEEEEEE----e---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMC---------P-A-----APRPGVTRVLKWVR----F---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~---------~-v-----~~~pgtT~~~~~~~----~---~~~i~l~DTpG~i~ 274 (383)
.+|+++|..++|||||+++|+..... . . ....|+|.+..... . +..+.++||||...
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 47999999999999999999742110 0 0 01145565532211 1 34588999999964
No 475
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.71 E-value=0.0029 Score=69.60 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.1
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMC 243 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~ 243 (383)
.+|+|+|..++|||||+++|+....+
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~ 45 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGI 45 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 36999999999999999999865433
No 476
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=96.69 E-value=0.0062 Score=54.04 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=73.7
Q ss_pred ccccchh--hhccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH--HHHhc--
Q 016762 73 SIEAYEE--ECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM--DQWLG-- 146 (383)
Q Consensus 73 ~iG~Gk~--E~~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l--~~~l~-- 146 (383)
-||..++ |..+.+.-+.+.|||..- ++++...--.-.+.+|..++++|..++.+..+.+- .+++.
T Consensus 41 TIgadFltKev~Vd~~~vtlQiWDTAG---------QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa 111 (210)
T KOG0394|consen 41 TIGADFLTKEVQVDDRSVTLQIWDTAG---------QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQA 111 (210)
T ss_pred ccchhheeeEEEEcCeEEEEEEEeccc---------HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhc
Confidence 4677777 446666677788888532 36655444455899999999999988766655331 11111
Q ss_pred ------CCCeEEEEEccCCCC-------HHHHHHHHHHHHHcC-CeEEEeeCcCCCchhhhh
Q 016762 147 ------NRKRILVLNREDMIS-------MADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLS 194 (383)
Q Consensus 147 ------~k~~ilVlNK~DL~~-------~~~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~ 194 (383)
.-|.+++.||+|+-. .+....|. ...| +..+.+|++.+.++...-
T Consensus 112 ~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC---~s~gnipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 112 SPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWC---KSKGNIPYFETSAKEATNVDEAF 170 (210)
T ss_pred CCCCCCcccEEEEcccccCCCCccceeeHHHHHHHH---HhcCCceeEEecccccccHHHHH
Confidence 348999999999954 23445563 3444 678889999998887653
No 477
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.66 E-value=0.0052 Score=56.10 Aligned_cols=100 Identities=13% Similarity=-0.014 Sum_probs=61.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMIS 161 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~~k~~ilVlNK~DL~~ 161 (383)
.+.+.+||..- | .+........+..+|.++.++|.....+.... .+.....+.|++++.||+|+..
T Consensus 57 ~i~i~~~Dt~g---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 57 PICFNVWDTAG---Q------EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEEEEEECCC---c------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 45666777522 1 23333333567789999999998765443221 1111224678899999999975
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~ 195 (383)
...........+..+..++.+|+++|.|+.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 128 RQVKARQITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred ccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 4322222334445567788999999999876543
No 478
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.66 E-value=0.0044 Score=53.99 Aligned_cols=102 Identities=11% Similarity=-0.071 Sum_probs=61.9
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~D 158 (383)
....+.+||... + .++.......+..+|.++.|||..++.+..... +.+.. .+.|++++.||+|
T Consensus 47 ~~~~~~i~Dt~G--------~-~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 117 (168)
T cd04177 47 RQCDLEILDTAG--------T-EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKAD 117 (168)
T ss_pred EEEEEEEEeCCC--------c-ccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChh
Confidence 335667787532 2 233444445678899999999987654332211 11111 2579999999999
Q ss_pred CCCHHHH--HHHHHHHHHcC-CeEEEeeCcCCCchhhhhHH
Q 016762 159 MISMADR--NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 159 L~~~~~~--~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~ 196 (383)
+...... ..-....++.+ ..++.+|+++|.|+.++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 118 LEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred ccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence 9654321 11112223344 56889999999998876443
No 479
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.63 E-value=0.0022 Score=66.75 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=0.0
Q ss_pred EEeEeecCCCChhHHHHhhhc---------------------CCccccCCCCCceeEEEEEEe---CCcEEEEecCc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK---------------------RRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPG 271 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~---------------------~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG 271 (383)
+|+|+|.+|+|||||.++|+. .........-|.|.......+ +..+.++||||
T Consensus 12 ni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
No 480
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=96.62 E-value=0.0099 Score=50.91 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=75.3
Q ss_pred ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc---CCCeEEEEEc
Q 016762 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG---NRKRILVLNR 156 (383)
Q Consensus 82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l~---~k~~ilVlNK 156 (383)
.+....+.+-|||... .+++...+..+.+....++.|.|....++..+.. ++++.. ..|.++|.||
T Consensus 51 ~i~G~~VkLqIwDtAG---------qErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK 121 (198)
T KOG0079|consen 51 DINGDRVKLQIWDTAG---------QERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNK 121 (198)
T ss_pred ecCCcEEEEEEeeccc---------HHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccC
Confidence 3445566778888533 3788888889999999999999999887776642 333332 4688999999
Q ss_pred cCCCCHH-----HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 157 EDMISMA-----DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 157 ~DL~~~~-----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
.|+..+. +.+.| -.+.|...+.+|++...+.+..-..+
T Consensus 122 ~d~~~RrvV~t~dAr~~---A~~mgie~FETSaKe~~NvE~mF~ci 164 (198)
T KOG0079|consen 122 NDDPERRVVDTEDARAF---ALQMGIELFETSAKENENVEAMFHCI 164 (198)
T ss_pred CCCccceeeehHHHHHH---HHhcCchheehhhhhcccchHHHHHH
Confidence 9997654 33444 34678889999999988877654443
No 481
>PRK13351 elongation factor G; Reviewed
Probab=96.61 E-value=0.0022 Score=69.20 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=36.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcc-----cc------CC------CCCceeEEEEEE---eCCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVR---FGKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v------~~------~pgtT~~~~~~~---~~~~i~l~DTpG~i~ 274 (383)
.+|+++|..|+|||||+++|...... .+ .+ .-|.|....... -+..+.++||||...
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 47999999999999999999743211 01 11 124444422211 245789999999863
No 482
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.61 E-value=0.017 Score=56.69 Aligned_cols=105 Identities=10% Similarity=-0.024 Sum_probs=64.1
Q ss_pred ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-hcCCCeEEEEEccCCC
Q 016762 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-LGNRKRILVLNREDMI 160 (383)
Q Consensus 82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~-l~~k~~ilVlNK~DL~ 160 (383)
..+..+.|+++.+..--. | .. ..+.+.+|+++.+.+. .+..+.+.... ..+..-++|+||+|+.
T Consensus 143 ~~~~~g~d~viieT~Gv~-q-----s~------~~i~~~aD~vlvv~~p---~~gd~iq~~k~gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 143 LCEAAGYDVILVETVGVG-Q-----SE------TAVAGMVDFFLLLQLP---GAGDELQGIKKGIMELADLIVINKADGD 207 (332)
T ss_pred HHhccCCCEEEEECCCCc-c-----ch------hHHHHhCCEEEEEecC---CchHHHHHHHhhhhhhhheEEeehhccc
Confidence 555678999999975443 2 11 1257789999999652 22222221111 1122348999999998
Q ss_pred CHHHHHHHHHHHHH---c--------CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 161 SMADRNAWATYFAK---Q--------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 161 ~~~~~~~w~~~l~~---~--------g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
+..........++. . ..+++++|+.+|.|+++|.+.+.+..
T Consensus 208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 75533322222221 1 14688999999999999877766543
No 483
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.60 E-value=0.0079 Score=56.02 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 148 RKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 148 k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.|.++|+||+|+.+.++...|. + ...++++|++.|.|+++|.+.+-+
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~~~----~-~~~~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDLLA----R-QPNSVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred eeEEEEEECccCCCHHHHHHHh----c-CCCEEEEcCCCCCCHHHHHHHHHH
Confidence 4889999999999887665432 2 245788999999999988766543
No 484
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.59 E-value=0.0087 Score=57.06 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 161 (383)
|||. ++..+....+..+|++++|+|+..+.......+.+.. .++|+++++||+|+..
T Consensus 72 PG~~-df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 72 PGHV-DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred CCcH-HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 7764 4566777889999999999999876544433343333 3789999999999864
No 485
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.55 E-value=0.0041 Score=67.47 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.2
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+|+++|..++|||||+++|...
T Consensus 22 ni~iigh~d~GKTTL~e~ll~~ 43 (731)
T PRK07560 22 NIGIIAHIDHGKTTLSDNLLAG 43 (731)
T ss_pred EEEEEEeCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 486
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.54 E-value=0.0079 Score=55.68 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 160 (383)
||| .++..+....+..+|.++.|+|+..+.......+.+.. .+.|.++++||+|+.
T Consensus 81 PG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 676 56777888889999999999999877654433333322 367999999999986
No 487
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.54 E-value=0.0016 Score=58.32 Aligned_cols=92 Identities=24% Similarity=0.352 Sum_probs=46.7
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccc--cCCCCCceeEEEEEEeCCcEEEEecCccccCCCCcHHHHH-HHHHhccc---
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAI-KLAICDDI--- 292 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~~~~~~~~~-~la~~~~i--- 292 (383)
.|.|+|..|+||++|++.|....... ++-.|..+... .-..+..+.|+|+||--+-+. .....+ .+....+|
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~-~~~~~~~~~~~~k~IIfv 82 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV-NNSKGKKLRLVDIPGHPRLRS-KLLDELKYLSNAKGIIFV 82 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG-SSTCGTCECEEEETT-HCCCH-HHHHHHHHHGGEEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe-ecCCCCEEEEEECCCcHHHHH-HHHHhhhchhhCCEEEEE
Confidence 58999999999999999999653221 11111111000 001145789999999854321 111111 11111211
Q ss_pred ccCcc---ChHHHHHHHHHHHhc
Q 016762 293 GERSY---DVADVAAILVQMLAR 312 (383)
Q Consensus 293 ~~~~~---~~~~~~~~ll~~l~~ 312 (383)
-+++. +..++|.+|.++|..
T Consensus 83 vDSs~~~~~~~~~Ae~Ly~iL~~ 105 (181)
T PF09439_consen 83 VDSSTDQKELRDVAEYLYDILSD 105 (181)
T ss_dssp EETTTHHHHHHHHHHHHHHHHHH
T ss_pred EeCccchhhHHHHHHHHHHHHHh
Confidence 12221 346788888887753
No 488
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=96.54 E-value=0.017 Score=49.55 Aligned_cols=120 Identities=11% Similarity=0.030 Sum_probs=71.8
Q ss_pred hhccccCCCcEEEEcCC-CCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC--CCcHHHHHHhc-----CCCeE
Q 016762 80 ECDWADLDADLYYWTKS-LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRI 151 (383)
Q Consensus 80 E~~~~~~~~~~vi~~~~-L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~--~~~~~l~~~l~-----~k~~i 151 (383)
|.++...++++.-.+.. .+-.-|.-|.+.++...-..+.+.++.|++++||.+|.. ....++..++. ..|++
T Consensus 47 edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~L 126 (186)
T KOG0075|consen 47 EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLL 126 (186)
T ss_pred hhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEE
Confidence 44555555544433322 111124333335555555678999999999999987643 23445666654 68999
Q ss_pred EEEEccCCCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 152 LVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 152 lVlNK~DL~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
++.||.|+-..-.-.+..+.+. ....-++.+|++...+++.+.+-+.+
T Consensus 127 VLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~ 179 (186)
T KOG0075|consen 127 VLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIE 179 (186)
T ss_pred EecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHH
Confidence 9999999864322222222221 01134677999999998877665443
No 489
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.53 E-value=0.0036 Score=58.29 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=36.0
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---C-CcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---G-KDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~-~~i~l~DTpG~i~ 274 (383)
||.++|..++||||+.+.+..+-...-....|.|.+++..++ + -.+.+.|+||-..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~ 60 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDD 60 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCS
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccc
Confidence 589999999999999999996533333345678888765554 2 2678999999864
No 490
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.48 E-value=0.0034 Score=66.53 Aligned_cols=56 Identities=27% Similarity=0.378 Sum_probs=37.7
Q ss_pred EEeEeecCCCChhHHHHhhhcCCcc--------cc------CCCCCceeEEEEEEe--------CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMC--------PA------APRPGVTRVLKWVRF--------GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~--------~v------~~~pgtT~~~~~~~~--------~~~i~l~DTpG~i~ 274 (383)
+++|+|..++|||||+++|+..... .+ +..-|.|...+.+.+ +..+.|+||||...
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 6999999999999999999753211 11 112366665433322 23478999999964
No 491
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.48 E-value=0.00097 Score=59.14 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC--CCcHHHHHHhc-----CCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~--~~~~~l~~~l~-----~k~~ilVlNK~D 158 (383)
.+..+.+||-.... ........++..+|.|++|+|+.++.. ....++..++. +.|+++++||.|
T Consensus 56 ~~~~~~~~d~gG~~---------~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D 126 (175)
T PF00025_consen 56 KGYSLTIWDLGGQE---------SFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQD 126 (175)
T ss_dssp TTEEEEEEEESSSG---------GGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTT
T ss_pred CcEEEEEEeccccc---------cccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccc
Confidence 45567777743321 111222246789999999999876432 12223444433 689999999999
Q ss_pred CCCHHHHHHHHHHHH------HcCCeEEEeeCcCCCchhhhhHH
Q 016762 159 MISMADRNAWATYFA------KQGTKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 159 L~~~~~~~~w~~~l~------~~g~~vi~iSa~~g~Gi~~L~~~ 196 (383)
+..........+.+. +....++.+|+.+|.|+.+..+-
T Consensus 127 ~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~W 170 (175)
T PF00025_consen 127 LPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEW 170 (175)
T ss_dssp STTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHH
T ss_pred ccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHH
Confidence 865322222223221 12245778999999998775443
No 492
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.46 E-value=0.0053 Score=53.48 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=29.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgt 251 (383)
.++|.++|..|+||||++++|.+...-.+++..|.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf 50 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGF 50 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCCccce
Confidence 57899999999999999999998775556665553
No 493
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.45 E-value=0.0036 Score=63.36 Aligned_cols=40 Identities=28% Similarity=0.368 Sum_probs=28.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC--ccccCCCCCceeEE
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVL 255 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pgtT~~~ 255 (383)
..++|+++|.-++|||||+.+|++.. ...-+-..|.|.+.
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~ 49 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRL 49 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEe
Confidence 45789999999999999999997631 11112234667664
No 494
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.011 Score=57.35 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=56.1
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC---CcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHH--------
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST---THPLMDQWLGNRKRILVLNREDMISMADRNAWATY-------- 171 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~---~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~-------- 171 (383)
+|||..- .+.+---..-.|+.+.|+|+..+... .+.-+.+ +..+++++|+||+|+.+..++..-.+.
T Consensus 77 CPGHasL-IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~-~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 77 CPGHASL-IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE-LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred CCCcHHH-HHHHHhhhheeeeeeEEEehhcccccccchhhhhhh-hhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 7999443 33333223345666777777654333 3332322 336789999999999987543332222
Q ss_pred HHHcC----CeEEEeeCcCC----CchhhhhHHHHH
Q 016762 172 FAKQG----TKVIFSNGQLG----MGTMKLSRLAKA 199 (383)
Q Consensus 172 l~~~g----~~vi~iSa~~g----~Gi~~L~~~l~~ 199 (383)
++..+ .+++.+|+..| .++.+|++.+++
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s 190 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALES 190 (522)
T ss_pred HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHH
Confidence 22222 46889999988 667677666543
No 495
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=96.42 E-value=0.0034 Score=55.70 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=39.7
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc----ccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC----PAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~----~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i 273 (383)
..++|.+.|-++||||||+|....++-- .+=...|.|++++.-.---.+.+.||.|=-
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE 69 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE 69 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHH
Confidence 4689999999999999999999865311 011224677776542111236789999963
No 496
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.34 E-value=0.0072 Score=56.01 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.3
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
+|+++|..++|||||+++|+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999984
No 497
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.32 E-value=0.0072 Score=54.98 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=31.3
Q ss_pred eecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762 223 VGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 223 vG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i 273 (383)
||-+|||||||++++...... ...+..|.+.....+.++ -.+.+.||+|--
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e 55 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE 55 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch
Confidence 689999999999999854311 122223333332333332 257899999974
No 498
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.32 E-value=0.011 Score=54.14 Aligned_cols=64 Identities=22% Similarity=0.243 Sum_probs=44.1
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 160 (383)
..+.+||. ||| .++.......+..+|.++.|+|+..+......++.+.. .++|.++|+||+|++
T Consensus 71 ~~i~iiDt--------pG~-~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 71 YLFNIIDT--------PGH-VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEC--------CCC-cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 44556663 555 34556667788999999999999866544333322222 368999999999986
No 499
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.0057 Score=61.80 Aligned_cols=88 Identities=20% Similarity=0.239 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--------------CCCeEEEEEccCCCCHHHHHHH--HHHHH
Q 016762 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------------NRKRILVLNREDMISMADRNAW--ATYFA 173 (383)
Q Consensus 110 ~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--------------~k~~ilVlNK~DL~~~~~~~~w--~~~l~ 173 (383)
..+..++.+.++|+|++|+|+-...++.+..+++.+. +++.+++.||+|++++-....| ..|..
T Consensus 338 gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~ 417 (531)
T KOG1191|consen 338 GIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS 417 (531)
T ss_pred hHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccc
Confidence 3455567799999999999997766777666655542 2789999999999987321222 11222
Q ss_pred HcC----CeEEEeeCcCCCchhhhhHHH
Q 016762 174 KQG----TKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 174 ~~g----~~vi~iSa~~g~Gi~~L~~~l 197 (383)
..| ..+.++|++++.|+.+|...+
T Consensus 418 ~~~~~~~~i~~~vs~~tkeg~~~L~~al 445 (531)
T KOG1191|consen 418 AEGRSVFPIVVEVSCTTKEGCERLSTAL 445 (531)
T ss_pred cccCcccceEEEeeechhhhHHHHHHHH
Confidence 212 234558888888887775443
No 500
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.29 E-value=0.0052 Score=52.84 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=64.5
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-CCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~-~k~~ilVlNK~ 157 (383)
+...+.+-+||.... ..........+..+|.++.+||..++.+..+.. +..... ..|++++.||+
T Consensus 44 ~~~~~~l~i~D~~g~---------~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~ 114 (162)
T PF00071_consen 44 DGKPVNLEIWDTSGQ---------ERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKS 114 (162)
T ss_dssp TTEEEEEEEEEETTS---------GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETT
T ss_pred ccccccccccccccc---------ccccccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence 345567788884322 222223345689999999999987654443321 222222 47899999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (383)
Q Consensus 158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~ 194 (383)
|+..... .+...+...+.+..++.+|++.+.|+.++-
T Consensus 115 D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 115 DLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp TGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHH
T ss_pred cccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHH
Confidence 9876322 122223344556788999999999988763
Done!