Query 016762
Match_columns 383
No_of_seqs 448 out of 4075
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 03:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 2.1E-54 7E-59 412.6 29.7 273 100-375 3-281 (282)
2 3cnl_A YLQF, putative uncharac 100.0 3.5E-47 1.2E-51 359.0 10.5 244 101-378 2-252 (262)
3 2qtf_A Protein HFLX, GTP-bindi 100.0 6.7E-35 2.3E-39 287.2 -1.1 217 44-287 12-251 (364)
4 3ec1_A YQEH GTPase; atnos1, at 99.9 4.1E-24 1.4E-28 210.7 14.4 155 107-275 58-225 (369)
5 3h2y_A GTPase family protein; 99.9 1.3E-23 4.5E-28 207.0 13.1 154 108-275 57-224 (368)
6 1mky_A Probable GTP-binding pr 99.8 3.2E-20 1.1E-24 186.9 14.7 184 87-273 48-239 (439)
7 2hjg_A GTP-binding protein ENG 99.8 2.7E-20 9.4E-25 187.2 9.1 181 87-275 50-236 (436)
8 1t9h_A YLOQ, probable GTPase E 99.8 7E-20 2.4E-24 175.7 8.0 140 117-276 83-238 (307)
9 4dcu_A GTP-binding protein ENG 99.8 4.6E-19 1.6E-23 179.2 10.6 182 86-275 69-256 (456)
10 2yv5_A YJEQ protein; hydrolase 99.7 1.7E-17 5.7E-22 159.2 13.6 138 117-274 76-228 (302)
11 2rcn_A Probable GTPase ENGC; Y 99.7 1E-17 3.5E-22 163.6 12.1 141 115-275 125-281 (358)
12 1u0l_A Probable GTPase ENGC; p 99.7 2.8E-16 9.6E-21 150.5 10.8 142 116-277 80-236 (301)
13 2e87_A Hypothetical protein PH 99.6 8.3E-17 2.8E-21 157.7 -1.0 156 122-278 59-230 (357)
14 4a9a_A Ribosome-interacting GT 99.5 4E-14 1.4E-18 139.2 7.0 59 216-275 71-132 (376)
15 3gee_A MNME, tRNA modification 99.1 4.7E-11 1.6E-15 121.1 5.0 59 216-274 232-293 (476)
16 1xzp_A Probable tRNA modificat 99.1 2.5E-11 8.6E-16 123.2 2.9 58 216-273 242-302 (482)
17 1mky_A Probable GTP-binding pr 99.0 8.7E-11 3E-15 117.9 4.1 56 219-274 3-61 (439)
18 1wf3_A GTP-binding protein; GT 99.0 2.3E-10 7.8E-15 109.3 6.3 58 218-275 8-68 (301)
19 3lxw_A GTPase IMAP family memb 99.0 2.2E-10 7.6E-15 106.1 5.7 60 216-275 20-83 (247)
20 3i8s_A Ferrous iron transport 99.0 4.2E-10 1.4E-14 105.9 6.3 58 217-275 3-63 (274)
21 3geh_A MNME, tRNA modification 99.0 8.8E-11 3E-15 118.6 1.6 59 216-274 223-284 (462)
22 1svi_A GTP-binding protein YSX 99.0 5.4E-10 1.8E-14 98.2 6.5 61 216-276 22-83 (195)
23 3pqc_A Probable GTP-binding pr 99.0 1.9E-09 6.5E-14 94.3 9.7 61 216-276 22-82 (195)
24 4dhe_A Probable GTP-binding pr 99.0 4.5E-10 1.5E-14 101.2 5.6 60 216-275 28-92 (223)
25 3iev_A GTP-binding protein ERA 99.0 5.5E-10 1.9E-14 106.9 6.4 60 217-276 10-73 (308)
26 2gj8_A MNME, tRNA modification 99.0 6.8E-10 2.3E-14 96.5 6.4 58 217-274 4-64 (172)
27 3iby_A Ferrous iron transport 98.9 5.8E-10 2E-14 104.0 5.6 57 219-276 3-62 (256)
28 2hjg_A GTP-binding protein ENG 98.9 3E-10 1E-14 113.9 3.8 57 218-274 4-63 (436)
29 1h65_A Chloroplast outer envel 98.9 2E-09 7E-14 100.7 8.0 60 216-275 38-100 (270)
30 3lxx_A GTPase IMAP family memb 98.9 1.8E-09 6.2E-14 99.0 7.3 62 216-278 28-94 (239)
31 3def_A T7I23.11 protein; chlor 98.9 2.2E-09 7.6E-14 100.1 7.9 60 216-275 35-97 (262)
32 1wxq_A GTP-binding protein; st 98.9 6.7E-10 2.3E-14 110.1 4.0 56 218-274 1-83 (397)
33 1ega_A Protein (GTP-binding pr 98.9 1.2E-09 4E-14 104.3 5.3 56 218-273 9-67 (301)
34 1jal_A YCHF protein; nucleotid 98.9 1.1E-09 3.9E-14 106.9 5.2 56 218-274 3-78 (363)
35 3b1v_A Ferrous iron uptake tra 98.9 3.3E-09 1.1E-13 99.8 8.1 58 217-275 3-62 (272)
36 3a1s_A Iron(II) transport prot 98.9 3E-09 1E-13 99.3 7.3 59 217-276 5-66 (258)
37 4dcu_A GTP-binding protein ENG 98.9 9.9E-10 3.4E-14 110.8 4.1 58 217-274 23-83 (456)
38 1f5n_A Interferon-induced guan 98.9 2.2E-09 7.7E-14 111.0 6.8 58 216-275 37-104 (592)
39 2xtp_A GTPase IMAP family memb 98.8 2.9E-09 1E-13 98.7 6.7 61 216-276 21-85 (260)
40 3t5d_A Septin-7; GTP-binding p 98.8 2.9E-09 1E-13 99.9 6.7 58 216-273 7-76 (274)
41 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 4.3E-09 1.5E-13 103.9 7.5 61 215-275 18-98 (392)
42 2cxx_A Probable GTP-binding pr 98.8 3.8E-09 1.3E-13 92.1 6.1 55 218-274 2-56 (190)
43 2ohf_A Protein OLA1, GTP-bindi 98.8 2.2E-09 7.4E-14 106.0 5.0 60 215-275 20-99 (396)
44 3k53_A Ferrous iron transport 98.8 6.4E-09 2.2E-13 97.4 7.8 60 217-277 3-65 (271)
45 1pui_A ENGB, probable GTP-bind 98.8 3.8E-09 1.3E-13 94.1 5.3 59 216-274 25-84 (210)
46 2wji_A Ferrous iron transport 98.8 8.7E-09 3E-13 88.5 7.4 57 218-275 4-63 (165)
47 2www_A Methylmalonic aciduria 98.8 1.9E-09 6.6E-14 105.0 3.2 24 216-239 73-96 (349)
48 2dyk_A GTP-binding protein; GT 98.8 5.6E-09 1.9E-13 88.4 5.0 57 218-274 2-61 (161)
49 1lnz_A SPO0B-associated GTP-bi 98.7 2.6E-09 9E-14 103.8 2.6 56 218-274 159-218 (342)
50 2aka_B Dynamin-1; fusion prote 98.7 3.5E-09 1.2E-13 99.9 3.4 35 216-250 25-64 (299)
51 2wjg_A FEOB, ferrous iron tran 98.7 2E-08 6.8E-13 87.6 8.0 58 217-275 7-67 (188)
52 2nzj_A GTP-binding protein REM 98.7 1.4E-08 4.8E-13 87.1 6.9 58 217-274 4-64 (175)
53 2qu8_A Putative nucleolar GTP- 98.7 1E-08 3.5E-13 93.1 5.9 58 216-274 28-88 (228)
54 2x2e_A Dynamin-1; nitration, h 98.7 1.9E-08 6.4E-13 98.0 7.1 34 217-250 31-69 (353)
55 1jwy_B Dynamin A GTPase domain 98.7 2.4E-08 8.3E-13 95.0 7.3 27 216-242 23-49 (315)
56 2dby_A GTP-binding protein; GD 98.7 7.6E-09 2.6E-13 101.4 3.4 57 218-275 2-82 (368)
57 1z0j_A RAB-22, RAS-related pro 98.7 3.3E-08 1.1E-12 84.2 7.0 58 216-273 5-66 (170)
58 1x3s_A RAS-related protein RAB 98.6 2.6E-08 8.7E-13 87.1 5.6 106 86-200 62-175 (195)
59 3q72_A GTP-binding protein RAD 98.6 3.2E-08 1.1E-12 84.2 5.9 58 217-274 2-61 (166)
60 2qpt_A EH domain-containing pr 98.6 4.5E-08 1.5E-12 100.9 6.8 40 216-255 64-105 (550)
61 1ek0_A Protein (GTP-binding pr 98.6 9.9E-08 3.4E-12 81.1 7.1 57 217-273 3-63 (170)
62 2j69_A Bacterial dynamin-like 98.5 9.8E-08 3.4E-12 101.0 8.2 36 216-251 68-103 (695)
63 1kao_A RAP2A; GTP-binding prot 98.5 1.4E-07 4.9E-12 79.7 7.6 55 217-273 3-62 (167)
64 4dhe_A Probable GTP-binding pr 98.5 5.4E-07 1.8E-11 80.7 11.8 116 86-201 77-209 (223)
65 2fg5_A RAB-22B, RAS-related pr 98.5 8.6E-08 3E-12 84.2 6.2 58 216-273 22-83 (192)
66 2lkc_A Translation initiation 98.5 3.5E-08 1.2E-12 85.0 3.4 57 216-273 7-66 (178)
67 2ged_A SR-beta, signal recogni 98.5 6E-08 2E-12 84.9 4.9 80 187-275 23-104 (193)
68 1r2q_A RAS-related protein RAB 98.5 1.3E-07 4.5E-12 80.3 6.9 58 216-273 5-66 (170)
69 1upt_A ARL1, ADP-ribosylation 98.5 1.2E-07 4.2E-12 80.8 6.6 56 216-273 6-62 (171)
70 3r7w_A Gtpase1, GTP-binding pr 98.5 7.2E-08 2.5E-12 92.0 5.6 57 217-273 3-63 (307)
71 2g6b_A RAS-related protein RAB 98.5 1.7E-07 5.7E-12 80.8 7.1 58 216-273 9-71 (180)
72 3tw8_B RAS-related protein RAB 98.5 1.5E-07 5.2E-12 80.9 6.6 57 216-273 8-69 (181)
73 3qq5_A Small GTP-binding prote 98.5 4.1E-08 1.4E-12 98.0 3.1 60 216-275 33-96 (423)
74 1z0f_A RAB14, member RAS oncog 98.5 2.2E-07 7.7E-12 79.7 7.2 58 216-273 14-75 (179)
75 4dsu_A GTPase KRAS, isoform 2B 98.5 2.5E-07 8.7E-12 80.1 7.4 56 216-273 3-63 (189)
76 1ksh_A ARF-like protein 2; sma 98.5 1.9E-07 6.5E-12 81.2 6.6 56 216-273 17-73 (186)
77 1wms_A RAB-9, RAB9, RAS-relate 98.5 2.4E-07 8.3E-12 79.5 7.2 57 216-273 6-67 (177)
78 2oil_A CATX-8, RAS-related pro 98.5 2.8E-07 9.5E-12 80.7 7.6 59 216-274 24-86 (193)
79 3gj0_A GTP-binding nuclear pro 98.5 1.5E-07 5.1E-12 84.6 5.9 58 216-273 14-75 (221)
80 3zvr_A Dynamin-1; hydrolase, D 98.5 3.2E-07 1.1E-11 97.3 9.2 63 183-247 19-81 (772)
81 1fzq_A ADP-ribosylation factor 98.5 1.3E-07 4.3E-12 82.6 5.2 56 216-273 15-71 (181)
82 1g16_A RAS-related protein SEC 98.4 1.4E-07 4.9E-12 80.2 5.2 57 217-274 3-64 (170)
83 2efe_B Small GTP-binding prote 98.4 2.9E-07 1E-11 79.3 7.1 58 216-273 11-72 (181)
84 1u8z_A RAS-related protein RAL 98.4 3.6E-07 1.2E-11 77.2 7.6 55 217-273 4-63 (168)
85 2h17_A ADP-ribosylation factor 98.4 1.8E-07 6.1E-12 81.3 5.6 56 216-273 20-76 (181)
86 1z2a_A RAS-related protein RAB 98.4 3.3E-07 1.1E-11 77.7 7.2 58 216-274 4-66 (168)
87 1moz_A ARL1, ADP-ribosylation 98.4 1.7E-07 5.8E-12 81.1 5.3 57 216-274 17-74 (183)
88 2gf9_A RAS-related protein RAB 98.4 3.8E-07 1.3E-11 79.6 7.7 58 216-273 21-82 (189)
89 1z08_A RAS-related protein RAB 98.4 2.4E-07 8E-12 78.9 6.1 57 216-273 5-66 (170)
90 2y8e_A RAB-protein 6, GH09086P 98.4 3.7E-07 1.3E-11 78.3 7.3 56 217-273 14-74 (179)
91 1zj6_A ADP-ribosylation factor 98.4 2.2E-07 7.4E-12 81.1 5.9 56 216-273 15-71 (187)
92 2p5s_A RAS and EF-hand domain 98.4 2.6E-07 9E-12 81.6 6.4 58 216-273 27-88 (199)
93 1z06_A RAS-related protein RAB 98.4 4.1E-07 1.4E-11 79.5 7.5 58 216-273 19-80 (189)
94 1c1y_A RAS-related protein RAP 98.4 3.9E-07 1.3E-11 77.2 7.1 56 217-274 3-63 (167)
95 2x77_A ADP-ribosylation factor 98.4 2.2E-07 7.6E-12 81.1 5.8 56 216-273 21-77 (189)
96 2erx_A GTP-binding protein DI- 98.4 2.1E-07 7.2E-12 79.1 5.5 55 217-273 3-62 (172)
97 2fn4_A P23, RAS-related protei 98.4 3.3E-07 1.1E-11 78.7 6.6 57 216-274 8-69 (181)
98 1zbd_A Rabphilin-3A; G protein 98.4 4.7E-07 1.6E-11 79.9 7.6 58 216-273 7-68 (203)
99 3tkl_A RAS-related protein RAB 98.4 3E-07 1E-11 80.4 6.3 57 216-273 15-76 (196)
100 3t5g_A GTP-binding protein RHE 98.4 4.5E-07 1.5E-11 78.3 7.3 57 216-274 5-66 (181)
101 1x3s_A RAS-related protein RAB 98.4 4.6E-07 1.6E-11 79.0 7.4 57 217-273 15-75 (195)
102 2bme_A RAB4A, RAS-related prot 98.4 4.7E-07 1.6E-11 78.5 7.3 57 216-273 9-70 (186)
103 2h57_A ADP-ribosylation factor 98.4 4.1E-07 1.4E-11 79.5 7.0 56 216-273 20-78 (190)
104 3clv_A RAB5 protein, putative; 98.4 4.9E-07 1.7E-11 78.9 7.4 26 216-241 6-31 (208)
105 1vg8_A RAS-related protein RAB 98.4 3.4E-07 1.2E-11 80.9 6.3 57 216-273 7-68 (207)
106 2ce2_X GTPase HRAS; signaling 98.4 6.4E-07 2.2E-11 75.4 7.7 54 218-273 4-62 (166)
107 1m2o_B GTP-binding protein SAR 98.4 3.8E-07 1.3E-11 80.2 6.5 56 217-274 23-79 (190)
108 2fh5_B SR-beta, signal recogni 98.4 3.9E-07 1.3E-11 81.2 6.6 56 216-273 6-65 (214)
109 3cph_A RAS-related protein SEC 98.4 5.3E-07 1.8E-11 80.0 7.4 58 216-274 19-81 (213)
110 3pqc_A Probable GTP-binding pr 98.4 4.4E-06 1.5E-10 72.6 13.0 114 87-200 67-191 (195)
111 2il1_A RAB12; G-protein, GDP, 98.4 4.7E-07 1.6E-11 79.5 6.8 57 216-273 25-86 (192)
112 3cb4_D GTP-binding protein LEP 98.4 3E-07 1E-11 95.5 6.4 135 88-240 71-216 (599)
113 1udx_A The GTP-binding protein 98.4 2.3E-07 7.7E-12 92.4 5.0 56 218-274 158-217 (416)
114 2a9k_A RAS-related protein RAL 98.4 7.4E-07 2.5E-11 76.9 7.6 56 216-273 17-77 (187)
115 2bov_A RAla, RAS-related prote 98.4 7.7E-07 2.6E-11 78.4 7.8 56 216-273 13-73 (206)
116 3j2k_7 ERF3, eukaryotic polype 98.4 3.5E-07 1.2E-11 91.7 6.1 58 216-273 16-106 (439)
117 1f6b_A SAR1; gtpases, N-termin 98.4 3.4E-07 1.1E-11 81.2 5.3 55 217-273 25-80 (198)
118 4bas_A ADP-ribosylation factor 98.3 4.8E-07 1.6E-11 79.3 6.2 56 216-273 16-74 (199)
119 3con_A GTPase NRAS; structural 98.3 7.5E-07 2.6E-11 77.6 7.3 55 217-273 21-80 (190)
120 4djt_A GTP-binding nuclear pro 98.3 4.1E-07 1.4E-11 81.3 5.5 60 216-275 10-74 (218)
121 4gzl_A RAS-related C3 botulinu 98.3 7.5E-07 2.6E-11 79.2 7.1 56 216-273 29-89 (204)
122 2a5j_A RAS-related protein RAB 98.3 6.3E-07 2.1E-11 78.5 6.4 59 216-274 20-82 (191)
123 3iev_A GTP-binding protein ERA 98.3 2.6E-06 9E-11 81.2 11.2 114 87-201 58-180 (308)
124 2hxs_A RAB-26, RAS-related pro 98.3 5E-07 1.7E-11 77.6 5.6 57 216-273 5-67 (178)
125 2bcg_Y Protein YP2, GTP-bindin 98.3 8.2E-07 2.8E-11 78.6 7.1 57 216-273 7-68 (206)
126 1ky3_A GTP-binding protein YPT 98.3 5.1E-07 1.8E-11 77.6 5.5 56 216-272 7-68 (182)
127 3sjy_A Translation initiation 98.3 1.9E-06 6.6E-11 85.2 10.3 104 88-200 75-189 (403)
128 1zd9_A ADP-ribosylation factor 98.3 7.6E-07 2.6E-11 77.8 6.6 56 216-273 21-78 (188)
129 3oes_A GTPase rhebl1; small GT 98.3 7.8E-07 2.7E-11 78.6 6.7 56 216-273 23-83 (201)
130 2o52_A RAS-related protein RAB 98.3 6.9E-07 2.3E-11 79.1 6.2 57 216-273 24-85 (200)
131 3kkq_A RAS-related protein M-R 98.3 1.3E-06 4.4E-11 75.5 7.8 56 216-273 17-77 (183)
132 1r8s_A ADP-ribosylation factor 98.3 7.2E-07 2.4E-11 75.5 6.0 54 218-273 1-55 (164)
133 2atv_A RERG, RAS-like estrogen 98.3 1.3E-06 4.4E-11 76.8 7.9 57 216-274 27-88 (196)
134 2gf0_A GTP-binding protein DI- 98.3 1.4E-06 4.9E-11 76.2 8.1 57 216-273 7-67 (199)
135 3bc1_A RAS-related protein RAB 98.3 9.6E-07 3.3E-11 76.6 6.9 57 216-273 10-81 (195)
136 2cjw_A GTP-binding protein GEM 98.3 3.4E-07 1.1E-11 80.8 3.9 57 217-273 6-67 (192)
137 2iwr_A Centaurin gamma 1; ANK 98.3 9.3E-07 3.2E-11 76.1 6.6 58 216-274 6-66 (178)
138 3q85_A GTP-binding protein REM 98.3 5.2E-07 1.8E-11 76.8 4.9 56 218-274 3-63 (169)
139 3izq_1 HBS1P, elongation facto 98.3 2.7E-07 9.1E-12 96.3 3.4 58 216-273 166-256 (611)
140 2ew1_A RAS-related protein RAB 98.3 1.3E-06 4.3E-11 77.9 7.4 56 216-272 25-85 (201)
141 2q3h_A RAS homolog gene family 98.3 8.6E-07 3E-11 78.0 6.1 57 216-274 19-80 (201)
142 3mca_A HBS1, elongation factor 98.3 1.9E-07 6.4E-12 97.1 1.9 58 216-273 176-266 (592)
143 1svi_A GTP-binding protein YSX 98.3 3.7E-06 1.3E-10 73.4 9.9 111 89-199 70-191 (195)
144 3c5c_A RAS-like protein 12; GD 98.3 1.1E-06 3.9E-11 76.8 6.3 57 216-274 20-81 (187)
145 3cpj_B GTP-binding protein YPT 98.2 1.1E-06 3.8E-11 79.1 6.3 57 216-273 12-73 (223)
146 3dz8_A RAS-related protein RAB 98.2 3.5E-07 1.2E-11 80.1 2.8 57 216-272 22-82 (191)
147 4bas_A ADP-ribosylation factor 98.2 5.2E-07 1.8E-11 79.1 3.9 108 84-200 59-186 (199)
148 1mh1_A RAC1; GTP-binding, GTPa 98.2 1E-06 3.4E-11 76.1 5.7 56 216-273 4-64 (186)
149 3cbq_A GTP-binding protein REM 98.2 5.3E-07 1.8E-11 79.7 4.0 57 216-273 22-83 (195)
150 2fu5_C RAS-related protein RAB 98.2 3.1E-07 1.1E-11 79.5 2.4 57 216-273 7-68 (183)
151 2gco_A H9, RHO-related GTP-bin 98.2 1.3E-06 4.4E-11 77.3 6.4 57 216-273 24-84 (201)
152 2yc2_C IFT27, small RAB-relate 98.2 4.8E-07 1.7E-11 79.7 3.4 58 216-273 19-84 (208)
153 3reg_A RHO-like small GTPase; 98.2 1.5E-06 5E-11 76.2 6.5 56 216-273 22-82 (194)
154 2fv8_A H6, RHO-related GTP-bin 98.2 1.6E-06 5.5E-11 77.0 6.8 56 217-273 25-84 (207)
155 2j1l_A RHO-related GTP-binding 98.2 1.9E-06 6.5E-11 77.1 7.2 56 216-273 33-93 (214)
156 2g3y_A GTP-binding protein GEM 98.2 9.4E-07 3.2E-11 79.7 5.1 56 217-272 37-97 (211)
157 3lvq_E ARF-GAP with SH3 domain 98.2 1E-06 3.6E-11 89.3 6.0 54 216-273 321-377 (497)
158 1r8s_A ADP-ribosylation factor 98.2 2.1E-06 7.2E-11 72.6 7.0 105 86-199 42-158 (164)
159 2hup_A RAS-related protein RAB 98.2 1.7E-06 5.6E-11 76.7 6.4 57 216-273 28-89 (201)
160 3p26_A Elongation factor 1 alp 98.2 5.9E-07 2E-11 91.1 3.7 58 216-273 32-122 (483)
161 3t1o_A Gliding protein MGLA; G 98.2 3E-06 1E-10 73.7 7.8 105 86-199 72-188 (198)
162 2b6h_A ADP-ribosylation factor 98.2 1.3E-06 4.4E-11 76.9 5.3 54 216-273 28-84 (192)
163 2f7s_A C25KG, RAS-related prot 98.2 8.4E-07 2.9E-11 79.2 4.0 26 216-241 24-49 (217)
164 2h57_A ADP-ribosylation factor 98.2 8.2E-07 2.8E-11 77.6 3.8 105 87-200 66-184 (190)
165 3l0i_B RAS-related protein RAB 98.2 2.1E-07 7.3E-12 82.2 -0.1 57 216-273 32-93 (199)
166 1nrj_B SR-beta, signal recogni 98.2 8.4E-07 2.9E-11 79.3 3.8 55 216-274 11-67 (218)
167 3q5d_A Atlastin-1; G protein, 98.2 9.1E-07 3.1E-11 88.6 4.1 23 218-240 68-90 (447)
168 3bc1_A RAS-related protein RAB 98.1 4E-06 1.4E-10 72.6 7.5 105 87-200 69-182 (195)
169 1zd9_A ADP-ribosylation factor 98.1 3.5E-06 1.2E-10 73.5 7.0 105 86-199 65-181 (188)
170 3t34_A Dynamin-related protein 98.1 2.9E-06 1E-10 82.5 7.1 26 217-242 34-59 (360)
171 2f7s_A C25KG, RAS-related prot 98.1 4.1E-06 1.4E-10 74.6 7.5 103 87-200 83-196 (217)
172 3bwd_D RAC-like GTP-binding pr 98.1 9E-07 3.1E-11 76.2 3.0 56 216-273 7-67 (182)
173 2dyk_A GTP-binding protein; GT 98.1 4E-06 1.4E-10 70.5 6.9 107 87-198 48-157 (161)
174 3izy_P Translation initiation 98.1 2.9E-07 1E-11 94.3 -0.2 56 216-272 3-62 (537)
175 1m7b_A RND3/RHOE small GTP-bin 98.1 3.1E-06 1.1E-10 73.5 6.3 57 216-273 6-66 (184)
176 1u8z_A RAS-related protein RAL 98.1 3.6E-06 1.2E-10 70.9 6.5 104 87-199 51-163 (168)
177 1wb1_A Translation elongation 98.1 9.3E-06 3.2E-10 82.3 10.6 105 88-201 73-187 (482)
178 2g6b_A RAS-related protein RAB 98.1 2.7E-06 9.3E-11 73.0 5.7 104 87-199 59-170 (180)
179 1upt_A ARL1, ADP-ribosylation 98.1 1.5E-06 5.1E-11 73.9 4.0 105 87-200 50-166 (171)
180 1ksh_A ARF-like protein 2; sma 98.1 2.4E-06 8.3E-11 74.1 5.3 105 87-200 61-177 (186)
181 2zej_A Dardarin, leucine-rich 98.1 2.8E-06 9.7E-11 73.9 5.8 56 218-273 3-67 (184)
182 1wf3_A GTP-binding protein; GT 98.1 6.1E-06 2.1E-10 78.5 8.4 112 85-200 52-170 (301)
183 2atx_A Small GTP binding prote 98.1 2.5E-06 8.7E-11 74.5 5.3 56 216-273 17-77 (194)
184 3ihw_A Centg3; RAS, centaurin, 98.1 6.2E-06 2.1E-10 72.0 7.8 57 216-273 19-78 (184)
185 3llu_A RAS-related GTP-binding 98.1 3.1E-06 1.1E-10 74.5 5.8 57 216-273 19-80 (196)
186 3q3j_B RHO-related GTP-binding 98.1 3.6E-06 1.2E-10 75.4 6.3 56 216-273 26-86 (214)
187 1zj6_A ADP-ribosylation factor 98.1 3E-06 1E-10 73.7 5.6 105 87-200 59-175 (187)
188 1kk1_A EIF2gamma; initiation o 98.1 7.4E-06 2.5E-10 81.1 8.7 104 88-200 83-197 (410)
189 2a9k_A RAS-related protein RAL 98.1 9.7E-06 3.3E-10 69.7 8.4 105 87-200 65-178 (187)
190 2j0v_A RAC-like GTP-binding pr 98.1 3.2E-06 1.1E-10 75.1 5.4 56 216-273 8-68 (212)
191 1xzp_A Probable tRNA modificat 98.1 8.7E-06 3E-10 82.4 9.1 112 86-199 289-401 (482)
192 1gwn_A RHO-related GTP-binding 98.1 4.7E-06 1.6E-10 74.3 6.3 57 216-273 27-87 (205)
193 2wkq_A NPH1-1, RAS-related C3 98.1 5.5E-06 1.9E-10 78.6 7.1 56 216-273 154-214 (332)
194 3dpu_A RAB family protein; roc 98.1 6.8E-06 2.3E-10 84.2 8.2 84 187-272 13-108 (535)
195 3t1o_A Gliding protein MGLA; G 98.1 5E-06 1.7E-10 72.3 6.2 58 216-273 13-85 (198)
196 3t5g_A GTP-binding protein RHE 98.0 2.5E-06 8.6E-11 73.5 4.1 84 116-199 73-165 (181)
197 1z0f_A RAB14, member RAS oncog 98.0 4.2E-06 1.4E-10 71.5 5.5 104 86-198 62-173 (179)
198 2f9l_A RAB11B, member RAS onco 98.0 8.2E-06 2.8E-10 71.9 7.4 57 217-274 5-66 (199)
199 3o47_A ADP-ribosylation factor 98.0 2.9E-06 1E-10 81.6 4.8 53 216-272 164-219 (329)
200 2efe_B Small GTP-binding prote 98.0 5.2E-06 1.8E-10 71.3 5.5 105 87-200 60-172 (181)
201 2h17_A ADP-ribosylation factor 98.0 2.9E-06 9.8E-11 73.5 3.8 102 87-197 64-177 (181)
202 1oix_A RAS-related protein RAB 98.0 1.1E-05 3.8E-10 70.8 7.6 57 217-274 29-90 (191)
203 2qu8_A Putative nucleolar GTP- 98.0 3.7E-05 1.3E-09 69.3 11.2 112 87-200 75-202 (228)
204 1fzq_A ADP-ribosylation factor 98.0 1.2E-05 4.1E-10 69.8 7.6 104 87-199 59-174 (181)
205 1wb1_A Translation elongation 98.0 2E-06 6.8E-11 87.2 2.9 56 217-272 19-83 (482)
206 2y8e_A RAB-protein 6, GH09086P 98.0 3.6E-06 1.2E-10 71.9 4.1 104 87-199 62-173 (179)
207 2j0v_A RAC-like GTP-binding pr 98.0 4.4E-06 1.5E-10 74.2 4.8 107 85-200 54-177 (212)
208 1zo1_I IF2, translation initia 98.0 1.1E-06 3.9E-11 89.2 1.0 57 216-273 3-62 (501)
209 2qm8_A GTPase/ATPase; G protei 98.0 4.2E-06 1.4E-10 80.9 4.9 24 216-239 54-77 (337)
210 1f60_A Elongation factor EEF1A 98.0 1.1E-06 3.8E-11 88.5 0.7 58 216-273 6-96 (458)
211 4dsu_A GTPase KRAS, isoform 2B 98.0 1.3E-05 4.4E-10 69.2 7.5 106 86-200 50-163 (189)
212 1s0u_A EIF-2-gamma, translatio 98.0 4.5E-06 1.5E-10 82.7 5.0 103 88-199 81-194 (408)
213 2qag_A Septin-2, protein NEDD5 98.0 4.8E-06 1.6E-10 81.2 5.1 58 216-273 36-106 (361)
214 2elf_A Protein translation elo 98.0 3.3E-06 1.1E-10 82.7 3.8 47 219-274 23-72 (370)
215 1kk1_A EIF2gamma; initiation o 98.0 4.6E-06 1.6E-10 82.6 4.9 41 216-256 9-51 (410)
216 1zun_B Sulfate adenylate trans 98.0 5E-06 1.7E-10 83.1 5.2 26 216-241 23-48 (434)
217 3th5_A RAS-related C3 botulinu 97.2 9.7E-07 3.3E-11 78.1 0.0 56 216-273 29-89 (204)
218 2il1_A RAB12; G-protein, GDP, 98.0 8.5E-06 2.9E-10 71.4 6.1 104 87-199 74-186 (192)
219 2bov_A RAla, RAS-related prote 98.0 2.8E-05 9.6E-10 68.2 9.5 104 87-199 61-173 (206)
220 3p26_A Elongation factor 1 alp 98.0 1.1E-05 3.7E-10 81.7 7.6 99 86-193 109-228 (483)
221 2fg5_A RAB-22B, RAS-related pr 98.0 6E-06 2E-10 72.3 5.0 106 86-200 70-183 (192)
222 2hup_A RAS-related protein RAB 98.0 1.3E-05 4.4E-10 70.9 7.2 104 87-199 77-189 (201)
223 3con_A GTPase NRAS; structural 98.0 1.3E-05 4.3E-10 69.7 7.0 106 86-200 67-180 (190)
224 1d2e_A Elongation factor TU (E 98.0 4.7E-06 1.6E-10 82.3 4.7 57 217-273 3-77 (397)
225 1z2a_A RAS-related protein RAB 98.0 4.8E-06 1.7E-10 70.4 4.1 105 86-199 52-163 (168)
226 3gee_A MNME, tRNA modification 98.0 1.1E-05 3.8E-10 81.5 7.5 83 116-200 308-395 (476)
227 3j2k_7 ERF3, eukaryotic polype 98.0 2.3E-05 7.8E-10 78.4 9.7 100 87-195 94-217 (439)
228 2b6h_A ADP-ribosylation factor 97.9 3.9E-06 1.3E-10 73.7 3.5 105 86-199 71-187 (192)
229 1r2q_A RAS-related protein RAB 97.9 5.1E-06 1.8E-10 70.2 4.0 104 87-199 54-165 (170)
230 1zun_B Sulfate adenylate trans 97.9 1.3E-05 4.4E-10 80.1 7.4 97 87-192 103-213 (434)
231 1kao_A RAP2A; GTP-binding prot 97.9 1.7E-05 5.8E-10 66.6 7.1 104 87-199 50-162 (167)
232 2p67_A LAO/AO transport system 97.9 4.2E-06 1.4E-10 80.9 3.7 38 216-253 55-98 (341)
233 1c1y_A RAS-related protein RAP 97.9 1.9E-05 6.5E-10 66.6 7.4 105 86-199 49-163 (167)
234 2c78_A Elongation factor TU-A; 97.9 3.1E-06 1.1E-10 83.7 2.6 59 216-274 10-87 (405)
235 2erx_A GTP-binding protein DI- 97.9 3.1E-05 1E-09 65.5 8.4 105 87-200 50-164 (172)
236 3q85_A GTP-binding protein REM 97.9 2.5E-05 8.6E-10 66.1 7.7 106 85-199 48-163 (169)
237 3cph_A RAS-related protein SEC 97.9 6.3E-06 2.1E-10 72.9 4.0 104 88-200 69-179 (213)
238 3dz8_A RAS-related protein RAB 97.9 2.3E-05 8E-10 68.3 7.6 106 85-199 69-182 (191)
239 3kkq_A RAS-related protein M-R 97.9 1.4E-05 4.8E-10 68.9 6.1 104 87-199 65-178 (183)
240 3tkl_A RAS-related protein RAB 97.9 1.1E-05 3.7E-10 70.3 5.3 104 87-199 64-175 (196)
241 2fu5_C RAS-related protein RAB 97.9 6.3E-06 2.2E-10 71.1 3.7 104 88-200 57-168 (183)
242 1ek0_A Protein (GTP-binding pr 97.9 7.6E-06 2.6E-10 69.2 4.1 103 87-198 51-164 (170)
243 1zbd_A Rabphilin-3A; G protein 97.9 1.4E-05 4.7E-10 70.3 5.9 105 86-199 55-167 (203)
244 3bwd_D RAC-like GTP-binding pr 97.9 5.5E-06 1.9E-10 71.2 3.2 105 86-199 54-177 (182)
245 3tr5_A RF-3, peptide chain rel 97.9 1.8E-06 6.3E-11 88.4 0.0 57 218-274 14-94 (528)
246 2nzj_A GTP-binding protein REM 97.9 2E-05 6.9E-10 67.0 6.6 106 86-199 50-165 (175)
247 3clv_A RAB5 protein, putative; 97.9 1.2E-05 4E-10 70.0 5.1 103 88-199 93-200 (208)
248 2j1l_A RHO-related GTP-binding 97.9 1.7E-05 5.7E-10 70.8 6.2 106 86-200 80-206 (214)
249 1z0j_A RAB-22, RAS-related pro 97.9 1.2E-05 3.9E-10 68.1 4.9 104 87-199 54-165 (170)
250 1s0u_A EIF-2-gamma, translatio 97.9 1.1E-05 3.8E-10 79.8 5.5 41 216-256 7-49 (408)
251 2hxs_A RAB-26, RAS-related pro 97.9 2.6E-05 8.8E-10 66.7 7.1 103 88-199 56-169 (178)
252 2fn4_A P23, RAS-related protei 97.9 9.5E-06 3.2E-10 69.4 4.4 105 87-200 56-169 (181)
253 2iwr_A Centaurin gamma 1; ANK 97.9 5.9E-05 2E-09 64.5 9.4 97 86-199 52-165 (178)
254 2ce2_X GTPase HRAS; signaling 97.9 4.8E-05 1.6E-09 63.6 8.6 105 86-199 49-161 (166)
255 1mh1_A RAC1; GTP-binding, GTPa 97.9 5.2E-06 1.8E-10 71.5 2.5 106 86-200 51-177 (186)
256 1moz_A ARL1, ADP-ribosylation 97.9 4.9E-06 1.7E-10 71.7 2.4 105 87-200 61-177 (183)
257 1g16_A RAS-related protein SEC 97.8 9.3E-06 3.2E-10 68.7 4.1 105 87-200 51-162 (170)
258 3sjy_A Translation initiation 97.8 6.8E-06 2.3E-10 81.2 3.5 25 216-240 7-31 (403)
259 1z08_A RAS-related protein RAB 97.8 1.1E-05 3.7E-10 68.4 4.2 105 86-199 53-165 (170)
260 2gco_A H9, RHO-related GTP-bin 97.8 1.1E-05 3.7E-10 71.2 4.4 105 86-199 71-196 (201)
261 3gj0_A GTP-binding nuclear pro 97.8 2.6E-06 9E-11 76.3 0.3 104 87-199 63-171 (221)
262 2p5s_A RAS and EF-hand domain 97.8 4.2E-05 1.4E-09 67.2 8.1 103 87-198 76-192 (199)
263 3tw8_B RAS-related protein RAB 97.8 2.3E-05 7.8E-10 67.0 6.3 105 88-201 58-169 (181)
264 3reg_A RHO-like small GTPase; 97.8 6.4E-06 2.2E-10 72.0 2.7 105 86-199 69-184 (194)
265 2gf9_A RAS-related protein RAB 97.8 1.4E-05 4.6E-10 69.6 4.6 105 86-199 69-181 (189)
266 3p32_A Probable GTPase RV1496/ 97.8 1.1E-05 3.7E-10 78.5 4.3 23 216-238 78-100 (355)
267 2yc2_C IFT27, small RAB-relate 97.8 1.2E-05 4E-10 70.7 4.1 104 87-199 72-188 (208)
268 2gf0_A GTP-binding protein DI- 97.8 2.5E-05 8.5E-10 68.1 6.1 106 87-201 55-169 (199)
269 2oil_A CATX-8, RAS-related pro 97.8 2.8E-05 9.7E-10 67.7 6.5 105 86-199 72-184 (193)
270 1jny_A EF-1-alpha, elongation 97.8 6.3E-06 2.2E-10 82.3 2.5 57 217-273 6-95 (435)
271 3q72_A GTP-binding protein RAD 97.8 2.4E-05 8.1E-10 66.1 5.8 106 85-199 46-160 (166)
272 2fh5_B SR-beta, signal recogni 97.8 4.9E-05 1.7E-09 67.4 8.1 68 87-163 53-131 (214)
273 1lnz_A SPO0B-associated GTP-bi 97.8 1.8E-05 6.3E-10 76.5 5.7 105 88-201 206-328 (342)
274 2atx_A Small GTP binding prote 97.8 2.6E-05 8.8E-10 68.0 6.0 104 86-198 64-188 (194)
275 2bme_A RAB4A, RAS-related prot 97.8 1.8E-05 6.1E-10 68.3 5.0 103 88-199 59-169 (186)
276 2lkc_A Translation initiation 97.8 4.6E-05 1.6E-09 65.0 7.6 85 116-201 74-169 (178)
277 3o47_A ADP-ribosylation factor 97.8 1.8E-05 6.1E-10 76.1 5.4 105 86-199 207-323 (329)
278 2ew1_A RAS-related protein RAB 97.8 1.7E-05 6E-10 70.3 4.9 104 87-199 74-185 (201)
279 2x77_A ADP-ribosylation factor 97.8 1.9E-05 6.5E-10 68.6 4.9 105 87-200 65-181 (189)
280 3cbq_A GTP-binding protein REM 97.8 8.2E-05 2.8E-09 65.4 9.0 106 84-198 68-183 (195)
281 3q3j_B RHO-related GTP-binding 97.8 1.6E-05 5.3E-10 71.2 4.3 105 84-200 71-200 (214)
282 1ky3_A GTP-binding protein YPT 97.8 3E-05 1E-09 66.3 5.8 104 87-199 57-174 (182)
283 2xex_A Elongation factor G; GT 97.8 8.5E-06 2.9E-10 86.1 2.8 58 217-274 10-87 (693)
284 1z06_A RAS-related protein RAB 97.8 5.8E-05 2E-09 65.5 7.7 99 87-194 68-179 (189)
285 4gzl_A RAS-related C3 botulinu 97.8 1.1E-05 3.8E-10 71.5 3.0 105 85-198 75-200 (204)
286 1f6b_A SAR1; gtpases, N-termin 97.7 1.8E-05 6.2E-10 69.8 4.4 103 87-198 68-194 (198)
287 3p32_A Probable GTPase RV1496/ 97.7 6.3E-05 2.1E-09 73.0 8.6 104 84-201 168-282 (355)
288 2a5j_A RAS-related protein RAB 97.7 1.5E-05 5E-10 69.6 3.4 103 87-198 69-179 (191)
289 2atv_A RERG, RAS-like estrogen 97.7 1.9E-05 6.4E-10 69.2 4.0 104 86-199 74-187 (196)
290 2o52_A RAS-related protein RAB 97.7 2E-05 6.8E-10 69.5 4.1 104 87-199 73-184 (200)
291 1wms_A RAB-9, RAB9, RAS-relate 97.7 4.8E-05 1.7E-09 64.8 6.5 104 87-199 55-170 (177)
292 4dkx_A RAS-related protein RAB 97.7 3.3E-05 1.1E-09 69.7 5.7 106 83-197 57-170 (216)
293 3th5_A RAS-related C3 botulinu 96.9 4.8E-06 1.6E-10 73.5 0.0 103 86-197 76-199 (204)
294 2e87_A Hypothetical protein PH 97.7 0.00025 8.7E-09 68.7 12.3 84 118-201 244-334 (357)
295 1g7s_A Translation initiation 97.7 1E-05 3.5E-10 83.9 2.3 56 216-273 4-81 (594)
296 1m2o_B GTP-binding protein SAR 97.7 1.7E-05 5.9E-10 69.4 3.4 103 87-198 66-187 (190)
297 4djt_A GTP-binding nuclear pro 97.7 6E-05 2E-09 67.0 7.0 105 88-201 61-173 (218)
298 2bcg_Y Protein YP2, GTP-bindin 97.7 1.6E-05 5.5E-10 70.1 3.0 104 87-199 56-167 (206)
299 2h5e_A Peptide chain release f 97.7 1.9E-05 6.5E-10 80.9 3.8 58 217-274 13-94 (529)
300 2fv8_A H6, RHO-related GTP-bin 97.7 1.5E-05 5E-10 70.7 2.5 106 86-200 71-197 (207)
301 3ihw_A Centg3; RAS, centaurin, 97.7 0.0001 3.5E-09 64.1 7.9 100 83-199 62-176 (184)
302 2wsm_A Hydrogenase expression/ 97.7 3.2E-06 1.1E-10 75.6 -2.0 24 217-240 30-53 (221)
303 3lvq_E ARF-GAP with SH3 domain 97.7 1.9E-05 6.5E-10 80.0 3.5 107 86-201 364-482 (497)
304 3sop_A Neuronal-specific septi 97.7 3.1E-05 1.1E-09 72.4 4.7 57 218-274 3-72 (270)
305 2c78_A Elongation factor TU-A; 97.7 4.9E-05 1.7E-09 75.0 6.3 94 87-189 74-180 (405)
306 1r5b_A Eukaryotic peptide chai 97.7 1.3E-05 4.6E-10 80.8 2.3 58 216-273 42-132 (467)
307 3c5h_A Glucocorticoid receptor 97.7 0.00013 4.5E-09 67.2 8.8 79 120-198 162-250 (255)
308 2gj8_A MNME, tRNA modification 97.6 1.6E-05 5.6E-10 68.5 2.5 106 88-200 52-163 (172)
309 2q3h_A RAS homolog gene family 97.6 6.2E-05 2.1E-09 65.9 6.1 84 116-199 87-191 (201)
310 4dkx_A RAS-related protein RAB 97.6 6E-05 2.1E-09 68.0 6.1 56 217-273 13-73 (216)
311 2hf9_A Probable hydrogenase ni 97.6 2.1E-05 7.3E-10 70.5 3.1 25 216-240 37-61 (226)
312 2qag_B Septin-6, protein NEDD5 97.6 5.9E-05 2E-09 75.0 6.2 58 217-274 42-107 (427)
313 2cxx_A Probable GTP-binding pr 97.6 0.00086 2.9E-08 57.6 13.0 109 89-200 45-181 (190)
314 3iby_A Ferrous iron transport 97.6 1.3E-05 4.5E-10 74.3 1.3 111 87-200 47-164 (256)
315 3izq_1 HBS1P, elongation facto 97.6 3.3E-05 1.1E-09 80.5 4.4 99 86-193 243-362 (611)
316 1jny_A EF-1-alpha, elongation 97.6 5E-05 1.7E-09 75.8 5.4 98 87-193 83-203 (435)
317 3llu_A RAS-related GTP-binding 97.6 0.00022 7.4E-09 62.4 8.9 103 85-197 66-191 (196)
318 1tq4_A IIGP1, interferon-induc 97.6 0.00013 4.5E-09 72.3 8.0 57 218-275 70-133 (413)
319 3geh_A MNME, tRNA modification 97.6 2.3E-05 8E-10 78.9 2.7 83 116-200 299-381 (462)
320 1ega_A Protein (GTP-binding pr 97.6 0.00014 4.8E-09 68.9 7.8 84 116-200 84-172 (301)
321 2ywe_A GTP-binding protein LEP 97.6 0.0001 3.5E-09 76.4 7.3 103 88-200 73-181 (600)
322 3a1s_A Iron(II) transport prot 97.5 3.2E-05 1.1E-09 71.7 3.1 109 86-200 50-164 (258)
323 3tr5_A RF-3, peptide chain rel 97.5 9.7E-05 3.3E-09 75.6 6.9 66 87-161 81-148 (528)
324 1d2e_A Elongation factor TU (E 97.5 0.00014 4.9E-09 71.5 7.7 94 87-189 65-171 (397)
325 3avx_A Elongation factor TS, e 97.5 4.7E-05 1.6E-09 83.8 4.1 58 216-273 295-370 (1289)
326 2elf_A Protein translation elo 97.5 0.00026 8.8E-09 69.2 8.9 105 87-202 59-179 (370)
327 1r5b_A Eukaryotic peptide chai 97.5 0.00014 4.7E-09 73.3 7.1 89 104-193 129-242 (467)
328 2qnr_A Septin-2, protein NEDD5 97.5 7E-05 2.4E-09 71.1 4.5 58 216-273 17-87 (301)
329 1vg8_A RAS-related protein RAB 97.5 0.00012 4.1E-09 64.2 5.7 106 86-200 55-172 (207)
330 3oes_A GTPase rhebl1; small GT 97.5 9.7E-05 3.3E-09 64.9 5.1 106 86-200 70-184 (201)
331 1dar_A EF-G, elongation factor 97.5 5.2E-05 1.8E-09 80.1 3.8 58 217-274 12-89 (691)
332 2wji_A Ferrous iron transport 97.5 9.5E-05 3.2E-09 62.9 4.7 76 119-198 80-160 (165)
333 3i8s_A Ferrous iron transport 97.5 2.2E-05 7.4E-10 73.5 0.7 78 118-200 83-166 (274)
334 2wkq_A NPH1-1, RAS-related C3 97.5 4.8E-05 1.6E-09 72.0 3.0 86 114-199 220-326 (332)
335 2qag_C Septin-7; cell cycle, c 97.4 7.3E-05 2.5E-09 74.3 3.9 59 215-274 29-100 (418)
336 3avx_A Elongation factor TS, e 97.4 0.00047 1.6E-08 76.0 10.3 96 103-199 366-482 (1289)
337 1f60_A Elongation factor EEF1A 97.4 6.5E-05 2.2E-09 75.5 3.0 98 87-193 84-202 (458)
338 3c5h_A Glucocorticoid receptor 97.4 4.7E-05 1.6E-09 70.3 1.8 25 216-240 18-51 (255)
339 1m7b_A RND3/RHOE small GTP-bin 97.4 4.5E-05 1.6E-09 66.0 1.6 105 86-199 53-179 (184)
340 2j37_W Signal recognition part 97.4 9E-05 3.1E-09 75.3 3.9 31 216-246 100-136 (504)
341 1gwn_A RHO-related GTP-binding 97.4 5.9E-05 2E-09 67.0 2.2 106 85-199 73-200 (205)
342 1yrb_A ATP(GTP)binding protein 97.4 0.00056 1.9E-08 62.5 8.9 111 87-201 108-255 (262)
343 3dpu_A RAB family protein; roc 97.3 0.00013 4.5E-09 74.6 4.9 105 86-201 96-206 (535)
344 3qq5_A Small GTP-binding prote 97.3 7E-05 2.4E-09 74.5 2.6 87 112-201 105-194 (423)
345 3b1v_A Ferrous iron uptake tra 97.3 0.00036 1.2E-08 65.2 7.2 106 87-200 48-161 (272)
346 3cpj_B GTP-binding protein YPT 97.3 0.00012 4.1E-09 65.6 3.8 104 87-199 61-172 (223)
347 3c5c_A RAS-like protein 12; GD 97.3 0.00018 6.3E-09 62.5 4.9 104 85-198 66-181 (187)
348 3cb4_D GTP-binding protein LEP 97.3 8.3E-05 2.8E-09 77.2 3.1 57 218-274 5-83 (599)
349 3k53_A Ferrous iron transport 97.3 0.00011 3.9E-09 68.2 3.7 81 119-201 80-164 (271)
350 2ywe_A GTP-binding protein LEP 97.3 6.5E-05 2.2E-09 77.9 2.1 58 217-274 6-85 (600)
351 1n0u_A EF-2, elongation factor 97.3 0.00012 4E-09 79.1 3.9 25 217-241 19-43 (842)
352 3r7w_A Gtpase1, GTP-binding pr 97.3 0.00054 1.8E-08 65.0 8.0 100 87-192 51-170 (307)
353 1g7s_A Translation initiation 97.3 0.00012 4.2E-09 75.8 3.7 104 89-201 71-216 (594)
354 2rdo_7 EF-G, elongation factor 97.3 0.00022 7.5E-09 75.5 5.6 58 217-274 10-94 (704)
355 1udx_A The GTP-binding protein 97.2 0.00056 1.9E-08 67.8 7.7 86 116-201 231-323 (416)
356 2qtf_A Protein HFLX, GTP-bindi 97.2 0.00083 2.8E-08 65.4 8.8 91 112-202 249-353 (364)
357 1yrb_A ATP(GTP)binding protein 97.2 5E-05 1.7E-09 69.7 -0.0 34 217-250 14-52 (262)
358 2g3y_A GTP-binding protein GEM 97.2 0.00076 2.6E-08 60.4 7.2 107 84-199 83-199 (211)
359 3t5d_A Septin-7; GTP-binding p 97.1 0.0013 4.6E-08 61.0 9.0 79 121-199 116-200 (274)
360 3izy_P Translation initiation 97.1 1.2E-05 4E-10 82.5 -5.6 119 116-234 71-211 (537)
361 2zej_A Dardarin, leucine-rich 97.1 0.0002 6.7E-09 62.1 3.0 104 87-199 55-174 (184)
362 2wjg_A FEOB, ferrous iron tran 97.1 0.00034 1.2E-08 60.3 4.2 79 119-201 84-167 (188)
363 2aka_B Dynamin-1; fusion prote 97.1 0.00056 1.9E-08 63.9 5.6 113 87-199 124-249 (299)
364 3mca_A HBS1, elongation factor 97.0 4.5E-05 1.5E-09 79.2 -2.4 87 104-191 263-371 (592)
365 1jwy_B Dynamin A GTPase domain 97.0 0.0014 4.7E-08 61.7 8.1 113 87-201 130-260 (315)
366 2p67_A LAO/AO transport system 97.0 0.0013 4.4E-08 63.4 7.7 102 85-200 146-258 (341)
367 3l0i_B RAS-related protein RAB 97.0 4.5E-05 1.5E-09 67.0 -2.6 102 88-198 82-191 (199)
368 3ney_A 55 kDa erythrocyte memb 96.9 0.00011 3.9E-09 65.4 -0.5 54 219-272 21-76 (197)
369 3lxx_A GTPase IMAP family memb 96.9 0.0035 1.2E-07 56.6 9.2 97 87-187 77-193 (239)
370 2www_A Methylmalonic aciduria 96.8 0.0027 9.3E-08 61.3 8.4 103 84-200 163-276 (349)
371 2dy1_A Elongation factor G; tr 96.8 0.00092 3.1E-08 70.2 5.0 58 217-274 9-86 (665)
372 3r7w_B Gtpase2, GTP-binding pr 96.8 0.00093 3.2E-08 64.1 4.6 56 219-274 1-58 (331)
373 2j69_A Bacterial dynamin-like 96.8 0.002 6.7E-08 68.1 7.3 104 88-199 174-321 (695)
374 3zvr_A Dynamin-1; hydrolase, D 96.7 0.0015 5.1E-08 69.4 6.0 91 109-199 175-274 (772)
375 2v3c_C SRP54, signal recogniti 96.7 0.00047 1.6E-08 68.7 2.0 23 217-239 99-121 (432)
376 1pui_A ENGB, probable GTP-bind 96.7 0.0097 3.3E-07 52.0 10.2 83 119-201 107-197 (210)
377 3lxw_A GTPase IMAP family memb 96.7 0.002 6.9E-08 58.9 5.8 111 87-201 69-206 (247)
378 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0034 1.2E-07 62.6 7.7 61 218-278 68-156 (457)
379 2cjw_A GTP-binding protein GEM 96.5 0.0043 1.5E-07 54.1 6.6 82 117-198 77-167 (192)
380 2wsm_A Hydrogenase expression/ 96.5 0.0028 9.5E-08 56.2 5.5 103 84-200 105-211 (221)
381 2dy1_A Elongation factor G; tr 96.4 0.0052 1.8E-07 64.5 7.6 65 87-160 73-139 (665)
382 2h5e_A Peptide chain release f 96.4 0.0023 8E-08 65.3 4.8 68 86-162 80-149 (529)
383 1zo1_I IF2, translation initia 96.3 0.00018 6E-09 73.1 -3.9 83 116-198 70-162 (501)
384 1ko7_A HPR kinase/phosphatase; 96.3 0.0042 1.4E-07 59.1 5.9 96 141-241 73-168 (314)
385 2xtp_A GTPase IMAP family memb 96.3 0.0038 1.3E-07 57.1 5.1 113 87-201 70-206 (260)
386 2rdo_7 EF-G, elongation factor 96.3 0.019 6.6E-07 60.6 11.1 67 87-162 81-149 (704)
387 1dar_A EF-G, elongation factor 96.2 0.0062 2.1E-07 64.2 7.1 66 87-161 76-143 (691)
388 2qag_A Septin-2, protein NEDD5 96.1 0.0048 1.6E-07 59.9 5.2 79 122-200 147-231 (361)
389 3vqt_A RF-3, peptide chain rel 96.1 0.006 2.1E-07 62.5 5.9 122 219-345 33-180 (548)
390 1nrj_B SR-beta, signal recogni 96.0 0.013 4.3E-07 51.6 7.1 72 118-189 80-170 (218)
391 3szr_A Interferon-induced GTP- 96.0 0.0069 2.4E-07 62.9 5.9 23 218-240 46-68 (608)
392 1wxq_A GTP-binding protein; st 95.9 0.0071 2.4E-07 59.5 5.4 47 147-193 214-260 (397)
393 1kgd_A CASK, peripheral plasma 95.9 0.0028 9.6E-08 54.9 2.0 38 219-256 7-45 (180)
394 2xex_A Elongation factor G; GT 95.9 0.0099 3.4E-07 62.7 6.5 67 87-162 74-142 (693)
395 2x2e_A Dynamin-1; nitration, h 95.8 0.0038 1.3E-07 60.2 2.8 113 87-199 129-254 (353)
396 3dm5_A SRP54, signal recogniti 95.7 0.017 5.7E-07 57.6 7.2 23 216-238 99-121 (443)
397 2qm8_A GTPase/ATPase; G protei 95.7 0.016 5.6E-07 55.5 6.7 105 83-201 143-259 (337)
398 3vqt_A RF-3, peptide chain rel 95.7 0.015 5.1E-07 59.6 6.8 58 103-161 107-166 (548)
399 2hf9_A Probable hydrogenase ni 95.6 0.024 8.4E-07 50.1 7.0 77 121-199 140-220 (226)
400 2ged_A SR-beta, signal recogni 95.5 0.0062 2.1E-07 52.4 2.9 54 115-168 113-177 (193)
401 3t34_A Dynamin-related protein 95.5 0.021 7.1E-07 55.0 6.7 108 87-196 135-254 (360)
402 1ye8_A Protein THEP1, hypothet 95.2 0.008 2.7E-07 52.2 2.6 23 219-241 2-24 (178)
403 1cip_A Protein (guanine nucleo 95.2 0.0022 7.6E-08 62.1 -1.1 103 87-198 192-339 (353)
404 3c8u_A Fructokinase; YP_612366 95.2 0.014 4.9E-07 51.5 4.2 25 216-240 21-45 (208)
405 3j25_A Tetracycline resistance 95.2 0.0095 3.2E-07 62.2 3.4 57 103-160 74-132 (638)
406 1zp6_A Hypothetical protein AT 95.1 0.013 4.3E-07 50.6 3.5 23 218-240 10-32 (191)
407 1lvg_A Guanylate kinase, GMP k 95.1 0.0087 3E-07 52.7 2.4 22 219-240 6-27 (198)
408 3l82_B F-box only protein 4; T 95.1 0.032 1.1E-06 50.1 6.0 87 107-193 112-213 (227)
409 3tau_A Guanylate kinase, GMP k 95.0 0.012 4E-07 52.2 3.1 24 218-241 9-32 (208)
410 2qpt_A EH domain-containing pr 94.9 0.039 1.3E-06 56.5 7.1 62 111-172 179-243 (550)
411 2f9l_A RAB11B, member RAS onco 94.8 0.0089 3E-07 52.0 1.7 85 116-200 73-165 (199)
412 1zcb_A G alpha I/13; GTP-bindi 94.7 0.0046 1.6E-07 60.1 -0.5 104 87-199 200-349 (362)
413 1np6_A Molybdopterin-guanine d 94.7 0.013 4.5E-07 50.8 2.3 22 219-240 8-29 (174)
414 1znw_A Guanylate kinase, GMP k 94.7 0.013 4.5E-07 51.7 2.4 22 219-240 22-43 (207)
415 3tr0_A Guanylate kinase, GMP k 94.6 0.017 5.8E-07 50.3 2.9 22 219-240 9-30 (205)
416 2qor_A Guanylate kinase; phosp 94.5 0.011 3.8E-07 51.9 1.5 23 218-240 13-35 (204)
417 3r7w_B Gtpase2, GTP-binding pr 94.4 0.024 8.2E-07 54.2 3.8 71 87-163 45-122 (331)
418 2f1r_A Molybdopterin-guanine d 94.4 0.0091 3.1E-07 51.6 0.7 22 219-240 4-25 (171)
419 1z6g_A Guanylate kinase; struc 94.4 0.016 5.4E-07 51.8 2.4 22 219-240 25-46 (218)
420 3asz_A Uridine kinase; cytidin 94.3 0.023 7.8E-07 49.9 3.1 24 217-240 6-29 (211)
421 3a00_A Guanylate kinase, GMP k 94.3 0.018 6.1E-07 49.9 2.3 21 220-240 4-24 (186)
422 1s96_A Guanylate kinase, GMP k 94.2 0.018 6E-07 51.8 2.3 23 219-241 18-40 (219)
423 4fid_A G protein alpha subunit 94.2 0.024 8.1E-07 54.5 3.3 67 86-161 159-242 (340)
424 2v9p_A Replication protein E1; 94.1 0.02 7E-07 54.2 2.6 21 219-239 128-148 (305)
425 2pcj_A ABC transporter, lipopr 94.1 0.024 8E-07 51.1 2.9 22 219-240 32-53 (224)
426 2j41_A Guanylate kinase; GMP, 94.1 0.025 8.4E-07 49.3 2.9 23 218-240 7-29 (207)
427 3tif_A Uncharacterized ABC tra 94.0 0.024 8.2E-07 51.4 2.8 22 219-240 33-54 (235)
428 1kag_A SKI, shikimate kinase I 94.0 0.022 7.6E-07 48.2 2.3 22 219-240 6-27 (173)
429 4gp7_A Metallophosphoesterase; 94.0 0.023 7.9E-07 48.6 2.5 20 219-238 11-30 (171)
430 3j25_A Tetracycline resistance 94.0 0.012 4.1E-07 61.5 0.6 57 219-275 4-80 (638)
431 2bdt_A BH3686; alpha-beta prot 94.0 0.023 7.7E-07 49.1 2.4 21 219-239 4-24 (189)
432 3ohm_A Guanine nucleotide-bind 93.9 0.031 1E-06 53.5 3.4 104 86-198 165-313 (327)
433 4eun_A Thermoresistant glucoki 93.9 0.027 9.2E-07 49.3 2.8 23 218-240 30-52 (200)
434 2cbz_A Multidrug resistance-as 93.9 0.027 9.4E-07 51.1 2.8 22 219-240 33-54 (237)
435 1mv5_A LMRA, multidrug resista 93.8 0.028 9.6E-07 51.2 2.8 22 219-240 30-51 (243)
436 1n0u_A EF-2, elongation factor 93.8 0.022 7.6E-07 61.3 2.4 65 87-160 97-163 (842)
437 1azs_C GS-alpha; complex (lyas 93.7 0.0099 3.4E-07 58.5 -0.5 65 87-160 216-297 (402)
438 1g6h_A High-affinity branched- 93.7 0.03 1E-06 51.5 2.8 22 219-240 35-56 (257)
439 2ff7_A Alpha-hemolysin translo 93.7 0.03 1E-06 51.2 2.8 22 219-240 37-58 (247)
440 2onk_A Molybdate/tungstate ABC 93.7 0.031 1.1E-06 50.9 2.8 22 219-240 26-47 (240)
441 2eyu_A Twitching motility prot 93.7 0.029 1E-06 51.7 2.6 21 219-239 27-47 (261)
442 3uie_A Adenylyl-sulfate kinase 93.6 0.036 1.2E-06 48.4 3.1 24 217-240 25-48 (200)
443 1knq_A Gluconate kinase; ALFA/ 93.6 0.038 1.3E-06 46.9 3.1 22 218-239 9-30 (175)
444 2pze_A Cystic fibrosis transme 93.6 0.032 1.1E-06 50.4 2.8 22 219-240 36-57 (229)
445 4g1u_C Hemin import ATP-bindin 93.6 0.031 1.1E-06 51.7 2.8 22 219-240 39-60 (266)
446 2bbw_A Adenylate kinase 4, AK4 93.6 0.034 1.2E-06 50.3 3.0 22 217-238 27-48 (246)
447 1odf_A YGR205W, hypothetical 3 93.6 0.069 2.4E-06 50.0 5.1 24 216-239 30-53 (290)
448 1sgw_A Putative ABC transporte 93.6 0.03 1E-06 50.1 2.6 22 219-240 37-58 (214)
449 3b85_A Phosphate starvation-in 93.6 0.03 1E-06 49.9 2.4 29 219-248 24-52 (208)
450 1b0u_A Histidine permease; ABC 93.6 0.03 1E-06 51.7 2.6 22 219-240 34-55 (262)
451 2qnr_A Septin-2, protein NEDD5 93.6 0.098 3.4E-06 49.1 6.2 48 147-195 155-206 (301)
452 3gfo_A Cobalt import ATP-bindi 93.5 0.033 1.1E-06 51.8 2.8 22 219-240 36-57 (275)
453 2i3b_A HCR-ntpase, human cance 93.5 0.028 9.6E-07 49.3 2.1 22 219-240 3-24 (189)
454 1rz3_A Hypothetical protein rb 93.5 0.075 2.6E-06 46.5 4.9 24 216-239 21-44 (201)
455 2if2_A Dephospho-COA kinase; a 93.5 0.036 1.2E-06 48.4 2.7 21 219-239 3-23 (204)
456 2ghi_A Transport protein; mult 93.4 0.035 1.2E-06 51.1 2.8 22 219-240 48-69 (260)
457 2qi9_C Vitamin B12 import ATP- 93.4 0.036 1.2E-06 50.8 2.8 23 219-241 28-50 (249)
458 1ji0_A ABC transporter; ATP bi 93.4 0.036 1.2E-06 50.4 2.8 22 219-240 34-55 (240)
459 2olj_A Amino acid ABC transpor 93.4 0.036 1.2E-06 51.2 2.8 22 219-240 52-73 (263)
460 1cke_A CK, MSSA, protein (cyti 93.4 0.036 1.2E-06 49.1 2.7 23 218-240 6-28 (227)
461 2d2e_A SUFC protein; ABC-ATPas 93.4 0.037 1.3E-06 50.6 2.8 22 219-240 31-52 (250)
462 2zu0_C Probable ATP-dependent 93.3 0.038 1.3E-06 51.1 2.8 22 219-240 48-69 (267)
463 4fn5_A EF-G 1, elongation fact 93.3 0.062 2.1E-06 56.7 4.7 21 218-238 14-34 (709)
464 1vpl_A ABC transporter, ATP-bi 93.3 0.039 1.3E-06 50.8 2.8 22 219-240 43-64 (256)
465 2ixe_A Antigen peptide transpo 93.3 0.039 1.3E-06 51.2 2.8 22 219-240 47-68 (271)
466 3nh6_A ATP-binding cassette SU 93.3 0.025 8.6E-07 53.5 1.5 22 219-240 82-103 (306)
467 2ihy_A ABC transporter, ATP-bi 93.3 0.039 1.3E-06 51.4 2.8 22 219-240 49-70 (279)
468 2qt1_A Nicotinamide riboside k 93.2 0.053 1.8E-06 47.5 3.5 24 217-240 21-44 (207)
469 1ex7_A Guanylate kinase; subst 93.2 0.031 1.1E-06 49.0 2.0 36 220-255 4-40 (186)
470 1ly1_A Polynucleotide kinase; 93.2 0.046 1.6E-06 46.3 3.0 22 218-239 3-24 (181)
471 2rhm_A Putative kinase; P-loop 93.2 0.052 1.8E-06 46.6 3.4 23 217-239 5-27 (193)
472 4fn5_A EF-G 1, elongation fact 93.2 0.087 3E-06 55.6 5.7 58 104-162 93-152 (709)
473 3kb2_A SPBC2 prophage-derived 93.2 0.035 1.2E-06 46.6 2.2 22 219-240 3-24 (173)
474 2yz2_A Putative ABC transporte 93.2 0.041 1.4E-06 50.9 2.8 22 219-240 35-56 (266)
475 3lw7_A Adenylate kinase relate 93.2 0.042 1.4E-06 46.0 2.7 19 219-237 3-21 (179)
476 2nq2_C Hypothetical ABC transp 93.1 0.042 1.4E-06 50.4 2.8 22 219-240 33-54 (253)
477 2xtz_A Guanine nucleotide-bind 93.1 0.018 6.1E-07 55.7 0.2 65 87-160 182-263 (354)
478 2pt7_A CAG-ALFA; ATPase, prote 93.1 0.042 1.5E-06 52.4 2.8 22 219-240 173-194 (330)
479 2xxa_A Signal recognition part 93.0 0.069 2.4E-06 53.0 4.3 23 216-238 99-121 (433)
480 3t61_A Gluconokinase; PSI-biol 92.9 0.045 1.6E-06 47.7 2.6 23 218-240 19-41 (202)
481 3lnc_A Guanylate kinase, GMP k 92.9 0.032 1.1E-06 50.0 1.6 22 219-240 29-51 (231)
482 3aez_A Pantothenate kinase; tr 92.9 0.05 1.7E-06 51.6 3.0 25 216-240 89-113 (312)
483 3tui_C Methionine import ATP-b 92.9 0.042 1.4E-06 53.3 2.6 22 219-240 56-77 (366)
484 1jjv_A Dephospho-COA kinase; P 92.9 0.052 1.8E-06 47.4 2.9 21 219-239 4-24 (206)
485 1oix_A RAS-related protein RAB 92.8 0.12 3.9E-06 44.6 5.0 83 116-198 97-187 (191)
486 2gza_A Type IV secretion syste 92.8 0.047 1.6E-06 52.7 2.7 22 219-240 177-198 (361)
487 4a74_A DNA repair and recombin 92.7 0.049 1.7E-06 48.0 2.5 21 219-239 27-47 (231)
488 2yvu_A Probable adenylyl-sulfa 92.7 0.071 2.4E-06 45.8 3.4 24 217-240 13-36 (186)
489 2pjz_A Hypothetical protein ST 92.7 0.054 1.8E-06 50.0 2.8 22 219-240 32-53 (263)
490 2jaq_A Deoxyguanosine kinase; 92.6 0.054 1.8E-06 46.8 2.6 22 219-240 2-23 (205)
491 1htw_A HI0065; nucleotide-bind 92.5 0.07 2.4E-06 45.3 3.1 23 219-241 35-57 (158)
492 1qhx_A CPT, protein (chloramph 92.5 0.065 2.2E-06 45.4 2.9 22 219-240 5-26 (178)
493 1xjc_A MOBB protein homolog; s 92.5 0.061 2.1E-06 46.4 2.7 21 219-239 6-26 (169)
494 2bbs_A Cystic fibrosis transme 92.5 0.061 2.1E-06 50.4 2.9 22 219-240 66-87 (290)
495 3cm0_A Adenylate kinase; ATP-b 92.4 0.065 2.2E-06 45.8 2.9 23 217-239 4-26 (186)
496 3vaa_A Shikimate kinase, SK; s 92.4 0.063 2.1E-06 46.8 2.8 21 219-239 27-47 (199)
497 1nks_A Adenylate kinase; therm 92.3 0.072 2.5E-06 45.5 3.0 21 219-239 3-23 (194)
498 2jeo_A Uridine-cytidine kinase 92.3 0.071 2.4E-06 48.2 3.1 24 217-240 25-48 (245)
499 2v54_A DTMP kinase, thymidylat 92.2 0.074 2.5E-06 46.1 3.0 24 217-240 4-27 (204)
500 2qag_C Septin-7; cell cycle, c 92.2 0.14 4.6E-06 50.6 5.2 73 121-193 139-217 (418)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-54 Score=412.58 Aligned_cols=273 Identities=35% Similarity=0.624 Sum_probs=226.4
Q ss_pred cCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeE
Q 016762 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (383)
Q Consensus 100 ~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~v 179 (383)
+|||||||.++.+++.+.++++|+|++|+|+|+|.++.++.+++++.++|+++|+||+||++.+..+.|.+++++.|..+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~ 82 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS 82 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence 89999999999999999999999999999999999999999999999999999999999999888889999998778889
Q ss_pred EEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE
Q 016762 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (383)
Q Consensus 180 i~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (383)
+++|++++.|+.+|.+.+.++........+.++.....++|++||+||||||||||+|++++.+.+++.||+|++.+++.
T Consensus 83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~ 162 (282)
T 1puj_A 83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK 162 (282)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE
Confidence 99999999999999887776654433222333444567899999999999999999999998889999999999999988
Q ss_pred eCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHH
Q 016762 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (383)
Q Consensus 260 ~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~ 339 (383)
++.++.|+|||||+++...+.+.++++++++++++..++.++++.++++.+++. +++.|..+|+++....+..+|++
T Consensus 163 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~~~~~~~~~~~~l~ 239 (282)
T 1puj_A 163 VGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH---YPERLKERYGLDEIPEDIAELFD 239 (282)
T ss_dssp ETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHH---CHHHHHHHTTCSSCCSSHHHHHH
T ss_pred eCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHh---ChHHHHHHcCCCCCCCCHHHHHH
Confidence 888999999999999888888888999999999988999999999999999886 67889999999743356889999
Q ss_pred HHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCC
Q 016762 340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPP 375 (383)
Q Consensus 340 ~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp 375 (383)
.+|++. +|| |+++||+.||+|||+||||+||||.|+
T Consensus 240 ~~a~~~g~~~kgg~~d~~~aa~~~l~d~~~Gklg~~~l~~~~ 281 (282)
T 1puj_A 240 AIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQPT 281 (282)
T ss_dssp HHHHHHTCBCSTTCBCHHHHHHHHHHHHHTTTTCSCCSCCCC
T ss_pred HHHHHhCCcccCCcccHHHHHHHHHHHHHcCCCCceECCCCC
Confidence 999874 455 999999999999999999999999865
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=3.5e-47 Score=358.97 Aligned_cols=244 Identities=31% Similarity=0.550 Sum_probs=192.1
Q ss_pred CCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEE
Q 016762 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180 (383)
Q Consensus 101 qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi 180 (383)
|||||||.++.+++.+.++++|+|++|+|+|+|.++.++.++ ++ ++|+++|+||+||++.+..+.|.+++++.|..+
T Consensus 2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v- 78 (262)
T 3cnl_A 2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV- 78 (262)
T ss_dssp -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence 899999999999999999999999999999999999988777 66 899999999999999888889999998888888
Q ss_pred EeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe
Q 016762 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260 (383)
Q Consensus 181 ~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~ 260 (383)
++|++++.|+.+|.+.++++. .++++||+||||||||+|+|.++..+.+++.||+|++.+++.+
T Consensus 79 ~iSa~~~~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~ 142 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL 142 (262)
T ss_dssp EECCTTSCHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC
T ss_pred EEECCCCcCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe
Confidence 999999999887755432221 4799999999999999999999887789999999999999888
Q ss_pred CCcEEEEecCccccCCC-CcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHH
Q 016762 261 GKDLEFLDSPGIIPMRI-SDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (383)
Q Consensus 261 ~~~i~l~DTpG~i~~~~-~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~ 339 (383)
+.++.++||||+..+.. .+.+.+ .+..++.++++.++++.++++ +++.+..+|+++. .+ .+|++
T Consensus 143 ~~~~~l~DtpG~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~l~~~---~~~~l~~~y~i~~--~d-~~~l~ 207 (262)
T 3cnl_A 143 ENGVKILDTPGILYKNIFSEDLAA---------KLLLVGSLPVERIEDQRIFER---AFEIFARSIGIES--SF-SEFFE 207 (262)
T ss_dssp TTSCEEESSCEECCCCCCSHHHHH---------HHHHTTSSCGGGCCCHHHHHH---HHHHHHHHHTCCC--CH-HHHHH
T ss_pred CCCEEEEECCCcccCcCCCChhhc---------ccccCCHHHHHHHHHHHHHHh---CHHHHHHHcCcCC--Cc-HHHHH
Confidence 88999999999998877 666554 123345556777777777764 5677899999984 23 78999
Q ss_pred HHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCCCCC
Q 016762 340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPPRLS 378 (383)
Q Consensus 340 ~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~~~ 378 (383)
.+|++. ++| |+++||+.||+||++|+||+||||.|+.+.
T Consensus 208 ~ia~~~g~~~kgg~~d~~~aa~~~l~d~~~g~l~~~~l~~~~~~~ 252 (262)
T 3cnl_A 208 DFARKRGLLKKGGVPDIERALMLFFTEVAQGKAGRVSFERPEDIT 252 (262)
T ss_dssp HHHHHTTCBCGGGCBCHHHHHHHHHHHHHTTTTCSCCSCCTTCC-
T ss_pred HHHHHhCCccCCCcccHHHHHHHHHHHHHcCCCCceECCCCcccc
Confidence 999874 345 999999999999999999999999887654
No 3
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.98 E-value=6.7e-35 Score=287.21 Aligned_cols=217 Identities=18% Similarity=0.126 Sum_probs=141.9
Q ss_pred cccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhhccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH--HHhh
Q 016762 44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK--DQLK 119 (383)
Q Consensus 44 ~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~--~~id 119 (383)
+|.|+..||+|||++| .++|+| +|||+||||+||+|++.+..++|+||||++|+|.| .+|+++.+. +++|
T Consensus 12 ~~~e~~~l~~~~~~~~~~~~~~~~-~~~~~~~~g~gk~~e~~~~~~~~~v~~~~~l~p~q-----~~~l~~~~~~~~v~d 85 (364)
T 2qtf_A 12 FEEEAIALVEGANYKVTSIYKLPK-SPNVKFYIQYDKLQQIKNDEEISTLIIFEQLKPRH-----FINIRRELKGKEVLD 85 (364)
T ss_dssp THHHHHHHHHHTTEEEEEEECCCS-SCBTTTBSCHHHHHHHHTCTTCCEEEESSCCCHHH-----HHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEEEcc-CCCCcceechhHHHHHhhccCCCEEEECCCCCHHH-----HHHHHHHhCCCceee
Confidence 8999999999999999 899998 99999999999998866689999999999999999 999999998 7999
Q ss_pred hcCeEEEEEecCCCCCC-C-cHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh-----
Q 016762 120 LMDVVIEVRDARIPLST-T-HPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK----- 192 (383)
Q Consensus 120 r~DlILeV~DaR~p~~~-~-~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~----- 192 (383)
++|+||+|||+|++..+ . ++++.++.+.+|++ ..|..+++..+ .+ +..|.|..+
T Consensus 86 r~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl--------------~~~~~l~~~~~-~i----~~~g~ge~~~e~~~ 146 (364)
T 2qtf_A 86 KILLLLEIFALHAGSKEAKMQIELARLKYELPII--------------KETYTKSKIGE-QQ----GPLGAGTYGVESTI 146 (364)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--------------HHC--------------------------CHH
T ss_pred hHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh--------------hhhhHHHHhcC-CC----CcCCcCHHHHHHHH
Confidence 99999999999999877 4 56677766654433 35644443322 22 112333322
Q ss_pred --hhHHHHHhhhhh-------hhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-
Q 016762 193 --LSRLAKALASDV-------NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF- 260 (383)
Q Consensus 193 --L~~~l~~l~~~~-------~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~- 260 (383)
+.+.+..+.... ...+..+. ......|++||+||||||||+|+|++.. ..+++.+|+|+|.. .+.+
T Consensus 147 ~~~~~~i~~l~~~l~~~~~~r~~~r~~r~-~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~ 224 (364)
T 2qtf_A 147 KFYKRRINKLMKELESIKIFKEKSIESNK-RNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPIN 224 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEEC
Confidence 222222222211 11111111 1122349999999999999999999876 57889999999864 3444
Q ss_pred CCcEEEEecCccccCCCCcHHHHHHHH
Q 016762 261 GKDLEFLDSPGIIPMRISDQAAAIKLA 287 (383)
Q Consensus 261 ~~~i~l~DTpG~i~~~~~~~~~~~~la 287 (383)
+..+.++||||+++..+++..++++..
T Consensus 225 g~~v~l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 225 NRKIMLVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp TEEEEEEECCCBCSSCCGGGHHHHHHH
T ss_pred CEEEEEEeCCCchhcCCHHHHHHHHHH
Confidence 457889999999987666766666533
No 4
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.91 E-value=4.1e-24 Score=210.74 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCH----HHHHHHHHH-HHHcCC---e
Q 016762 107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATY-FAKQGT---K 178 (383)
Q Consensus 107 ~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~----~~~~~w~~~-l~~~g~---~ 178 (383)
.+.+.+.+..+.+++++|++|+|++++.++...++.+++.++|+++|+||+||++. +....|... +++.|. .
T Consensus 58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~ 137 (369)
T 3ec1_A 58 DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVD 137 (369)
T ss_dssp -CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSE
T ss_pred HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCccc
Confidence 45677777788899999999999999998888889998889999999999999875 345667654 455665 6
Q ss_pred EEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcC-----CccccCCCCCcee
Q 016762 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTR 253 (383)
Q Consensus 179 vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pgtT~ 253 (383)
++++|+++|.|+.+|.+.+.++.. ..+|+++|+||||||||+|+|++. ..+.+++.||||+
T Consensus 138 v~~iSA~~g~gi~~L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~ 203 (369)
T 3ec1_A 138 VCLVSAAKGIGMAKVMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL 203 (369)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE
Confidence 889999999999998877765531 125999999999999999999986 5677899999999
Q ss_pred EEEEEEeCCcEEEEecCccccC
Q 016762 254 VLKWVRFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 254 ~~~~~~~~~~i~l~DTpG~i~~ 275 (383)
+...+.++.++.++|||||..+
T Consensus 204 ~~~~~~~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 204 DMIEIPLESGATLYDTPGIINH 225 (369)
T ss_dssp EEEEEECSTTCEEEECCSCCCC
T ss_pred eeEEEEeCCCeEEEeCCCcCcH
Confidence 9998888888999999999865
No 5
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.90 E-value=1.3e-23 Score=207.00 Aligned_cols=154 Identities=26% Similarity=0.363 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH----HHHHHHHH-HHHcCC---eE
Q 016762 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV 179 (383)
Q Consensus 108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~----~~~~w~~~-l~~~g~---~v 179 (383)
+.+.+.+.++.+.+|+|++|+|++++..+...++.+++.++|+++|+||+||.+.. ....|... +++.|. .+
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 55666677777888899999999998877777888888899999999999998654 45677654 455665 78
Q ss_pred EEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC------ccccCCCCCcee
Q 016762 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTR 253 (383)
Q Consensus 180 i~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~------~~~v~~~pgtT~ 253 (383)
+++|+++|.|+++|.+.+.++.. ..+|+++|+||||||||+|+|++.. ...+++.||||+
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~ 202 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL 202 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred EEEeCCCCcCHHHHHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence 99999999999998877765431 1359999999999999999999853 445789999999
Q ss_pred EEEEEEeCCcEEEEecCccccC
Q 016762 254 VLKWVRFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 254 ~~~~~~~~~~i~l~DTpG~i~~ 275 (383)
+...+.++.++.++|||||..+
T Consensus 203 ~~~~~~~~~~~~liDtPG~~~~ 224 (368)
T 3h2y_A 203 DLIDIPLDEESSLYDTPGIINH 224 (368)
T ss_dssp CEEEEESSSSCEEEECCCBCCT
T ss_pred ceEEEEecCCeEEEeCCCcCcH
Confidence 9999888888999999999865
No 6
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=3.2e-20 Score=186.89 Aligned_cols=184 Identities=21% Similarity=0.258 Sum_probs=122.6
Q ss_pred CCcEEEEcCCCCCcCCCc--hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCH
Q 016762 87 DADLYYWTKSLRPVQWYP--GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~P--gh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~ 162 (383)
+..+.+||...... +. +....+.++....++.+|+||+|+|++.+.+..+..+..++. ++|+++|+||+|+...
T Consensus 48 ~~~~~l~DT~G~~~--~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~ 125 (439)
T 1mky_A 48 GKTFKLVDTCGVFD--NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE 125 (439)
T ss_dssp TEEEEEEECTTTTS--SGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH
T ss_pred CeEEEEEECCCccc--cccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 34577888654211 10 012445566677899999999999999888877777777664 7999999999998643
Q ss_pred HHHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC
Q 016762 163 ADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 163 ~~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
.....+.++ .+.|. .++++|+++|.|+.+|.+.+.+..................++|++||.||||||||+|+|++..
T Consensus 126 ~~~~~~~~~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 126 FEREVKPEL-YSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp HHHHTHHHH-GGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cHHHHHHHH-HhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 122222233 35564 6889999999999998766544332211000000012346899999999999999999999987
Q ss_pred ccccCCCCCceeEEE--EEEe-CCcEEEEecCccc
Q 016762 242 MCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 242 ~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i 273 (383)
...+++.||+|++.. .+.+ +..+.++||||+.
T Consensus 205 ~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~ 239 (439)
T 1mky_A 205 RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 239 (439)
T ss_dssp TEEECCCC------CCEEEEETTEEEEESSCSCC-
T ss_pred ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCc
Confidence 778999999999864 2333 4578899999985
No 7
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=2.7e-20 Score=187.24 Aligned_cols=181 Identities=18% Similarity=0.225 Sum_probs=116.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (383)
+.++.+||....... -.+....+..+....++.+|+||+|+|++.+.+..+.++..++. ++|+++|+||+|+.+...
T Consensus 50 ~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~ 128 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIG-DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA 128 (436)
T ss_dssp SSCCEEEC----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----
T ss_pred CceEEEEECCCCCCc-chhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh
Confidence 456778884322100 00012355566667899999999999999988877777777664 789999999999975421
Q ss_pred HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc
Q 016762 165 RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (383)
Q Consensus 165 ~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~ 243 (383)
...+ +.+.|. .++++|+++|.|+.+|.+.+.+...... ........++|++||.||||||||+|+|++....
T Consensus 129 --~~~~-~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~ 201 (436)
T 2hjg_A 129 --NIYD-FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERV 201 (436)
T ss_dssp --CCCS-SGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred --hHHH-HHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCce
Confidence 1111 224453 6889999999999998776655432211 0011234689999999999999999999998877
Q ss_pred ccCCCCCceeEEEE--EEe-CCcEEEEecCccccC
Q 016762 244 PAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 244 ~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~~ 275 (383)
.+++.+|||++... +.. +..+.|+||||+...
T Consensus 202 ~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 202 IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 236 (436)
T ss_dssp EEC---------CCEEEEETTEEEEETTHHHHTCB
T ss_pred eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcC
Confidence 79999999999642 233 457999999999643
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.79 E-value=7e-20 Score=175.67 Aligned_cols=140 Identities=21% Similarity=0.253 Sum_probs=107.4
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH----HHHHHHHHHHcCCeEEEeeCcCC
Q 016762 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG 187 (383)
Q Consensus 117 ~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~----~~~w~~~l~~~g~~vi~iSa~~g 187 (383)
.+.++|+|++|+|+++|..+.+ .+++++ .+++.++|+||+||++..+ ++.|.++|++.|+.++++|+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 6899999999999999998887 788776 4789999999999998754 68899999888999999999999
Q ss_pred CchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCC-------CceeEEEEEEe
Q 016762 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRF 260 (383)
Q Consensus 188 ~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~ 260 (383)
.|+++|.+..+ .-.++|+|.+|||||||+|+|.+.....++... ++|++.++++.
T Consensus 162 ~g~~~L~~~~~------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~ 223 (307)
T 1t9h_A 162 DSLADIIPHFQ------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT 223 (307)
T ss_dssp TTCTTTGGGGT------------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred CCHHHHHhhcC------------------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence 99877654321 125899999999999999999987655555554 57777666666
Q ss_pred CCcEEEEecCccccCC
Q 016762 261 GKDLEFLDSPGIIPMR 276 (383)
Q Consensus 261 ~~~i~l~DTpG~i~~~ 276 (383)
. ..+++||||+....
T Consensus 224 ~-~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 224 S-GGLVADTPGFSSLE 238 (307)
T ss_dssp T-TEEEESSCSCSSCC
T ss_pred C-CEEEecCCCccccc
Confidence 5 56899999998643
No 9
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=4.6e-19 Score=179.24 Aligned_cols=182 Identities=18% Similarity=0.247 Sum_probs=119.3
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA 163 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~ 163 (383)
.+..+.+||..--... -.+.+..+.+.....++.+|+||+|+|++.+....+.++.+++. ++|+++|+||+|+....
T Consensus 69 ~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIG-DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp CSSCCEEECCCC-------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC------
T ss_pred CCceEEEEECCCCCCc-chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh
Confidence 3456778875431100 00013666677778899999999999999988888878877775 78999999999987542
Q ss_pred HHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCc
Q 016762 164 DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (383)
Q Consensus 164 ~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~ 242 (383)
..+.+++ ..| ..++++|+++|.|+.+|.+.+.+...... .........+|+++|.||||||||+|+|++...
T Consensus 148 --~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~ 220 (456)
T 4dcu_A 148 --ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEER 220 (456)
T ss_dssp -----CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred --hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCc
Confidence 1222222 344 45778999999999988766654332111 111123568999999999999999999998877
Q ss_pred cccCCCCCceeEEE--EEEe-CCcEEEEecCccccC
Q 016762 243 CPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 243 ~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i~~ 275 (383)
..+++.+|+|++.. .+.. +..+.++||||+...
T Consensus 221 ~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 221 VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256 (456)
T ss_dssp EEECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence 88999999999952 3333 457899999998753
No 10
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.73 E-value=1.7e-17 Score=159.17 Aligned_cols=138 Identities=23% Similarity=0.356 Sum_probs=106.5
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCCeEEEeeCcCCC
Q 016762 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (383)
Q Consensus 117 ~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~l~~~g~~vi~iSa~~g~ 188 (383)
.+..+|+++.|+|++.|..+.+ .+.+++ .+.|.++|+||+||.+..+ ...|.+++++.|..++++|+++|.
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE 154 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 6899999999999998864443 344443 4789999999999998752 567777787788899999999999
Q ss_pred chhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEeC
Q 016762 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFG 261 (383)
Q Consensus 189 Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~ 261 (383)
|+++|.+.+. ...++++|.+|||||||+|+|. .....++.... +|+....+...
T Consensus 155 gi~~L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~ 215 (302)
T 2yv5_A 155 GIDELVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG 215 (302)
T ss_dssp THHHHHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET
T ss_pred CHHHHHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC
Confidence 9888755421 1248999999999999999999 66555665554 67766666655
Q ss_pred CcEEEEecCcccc
Q 016762 262 KDLEFLDSPGIIP 274 (383)
Q Consensus 262 ~~i~l~DTpG~i~ 274 (383)
...+++||||+..
T Consensus 216 ~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 216 KGSFVGDTPGFSK 228 (302)
T ss_dssp TTEEEESSCCCSS
T ss_pred CCcEEEECcCcCc
Confidence 5678999999963
No 11
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.73 E-value=1e-17 Score=163.65 Aligned_cols=141 Identities=23% Similarity=0.331 Sum_probs=108.2
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCCeEEEeeCcC
Q 016762 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQL 186 (383)
Q Consensus 115 ~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~l~~~g~~vi~iSa~~ 186 (383)
+.++.++|+|+.| |++.|..+.+ .+++++ .+++.++|+||+||++.+. ...|..+|...|+.++++|+.+
T Consensus 125 ~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 125 KPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3457999999955 7788877766 577775 4788999999999998765 6789999998999999999999
Q ss_pred CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCc-cccCCCC---C----ceeEEEEE
Q 016762 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP---G----VTRVLKWV 258 (383)
Q Consensus 187 g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~p---g----tT~~~~~~ 258 (383)
+.|+..|...+ . .-.++|+|.+|||||||||.|.+... ..++... | +|+..+..
T Consensus 203 ~~gl~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~ 264 (358)
T 2rcn_A 203 QDGLKPLEEAL----T--------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLY 264 (358)
T ss_dssp TBTHHHHHHHH----T--------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEE
T ss_pred CcCHHHHHHhc----C--------------CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEE
Confidence 99987775432 0 12589999999999999999998765 5555443 3 56666677
Q ss_pred EeCCcEEEEecCccccC
Q 016762 259 RFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 259 ~~~~~i~l~DTpG~i~~ 275 (383)
.+..+..++||||+...
T Consensus 265 ~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 265 HFPHGGDVIDSPGVREF 281 (358)
T ss_dssp ECTTSCEEEECHHHHTC
T ss_pred EECCCCEecCcccHHHh
Confidence 77667789999999754
No 12
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.65 E-value=2.8e-16 Score=150.49 Aligned_cols=142 Identities=22% Similarity=0.357 Sum_probs=101.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCCeEEEeeCcCC
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLG 187 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~l~~~g~~vi~iSa~~g 187 (383)
..+..+|++++|+|++++..+.+ .+..++ .+.|+++|+||+||.+... ...|.+.+... ..++++|+++|
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg 157 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTG 157 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred cccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCC
Confidence 46899999999999998864432 344443 3789999999999987654 45566555433 77899999999
Q ss_pred CchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEe
Q 016762 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRF 260 (383)
Q Consensus 188 ~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~ 260 (383)
.|+.++...+. .-.++++|.+|+|||||+|+|.+.....++.... +|+..+.+++
T Consensus 158 ~gv~~lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~ 219 (301)
T 1u0l_A 158 MGIEELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF 219 (301)
T ss_dssp TTHHHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC
T ss_pred cCHHHHHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEc
Confidence 99887754421 1148999999999999999999866555554443 5665555555
Q ss_pred CCcEEEEecCccccCCC
Q 016762 261 GKDLEFLDSPGIIPMRI 277 (383)
Q Consensus 261 ~~~i~l~DTpG~i~~~~ 277 (383)
....+++||||+....+
T Consensus 220 ~~~g~v~q~p~~~~~~~ 236 (301)
T 1u0l_A 220 DFGGYVVDTPGFANLEI 236 (301)
T ss_dssp TTSCEEESSCSSTTCCC
T ss_pred CCCCEEEECcCCCccCC
Confidence 55568999999875543
No 13
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.58 E-value=8.3e-17 Score=157.66 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=109.3
Q ss_pred CeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHHHHHHHHHHHH-c-CCeEEEeeCcCCCchhhhhH
Q 016762 122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 122 DlILeV~DaR~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~-g~~vi~iSa~~g~Gi~~L~~ 195 (383)
|.+-.|++++.+.++.++.++++. ..+++++++||+|++++...+.|.+|++. . +.....++...+.+..++.+
T Consensus 59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (357)
T 2e87_A 59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS 138 (357)
T ss_dssp HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 455567788878788888887776 67888899999999999999999999876 3 43332233333344444444
Q ss_pred HHHHhhhh-------hhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEE
Q 016762 196 LAKALASD-------VNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLE 265 (383)
Q Consensus 196 ~l~~l~~~-------~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~ 265 (383)
.++++... +...++.+.......+|+++|+||||||||+|+|++.. ..+++.||+|++.+...+ +..+.
T Consensus 139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~ 217 (357)
T 2e87_A 139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQ 217 (357)
T ss_dssp HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEE
Confidence 43333221 11222222222456789999999999999999999876 667889999999876554 34589
Q ss_pred EEecCccccCCCC
Q 016762 266 FLDSPGIIPMRIS 278 (383)
Q Consensus 266 l~DTpG~i~~~~~ 278 (383)
++||||+......
T Consensus 218 l~Dt~G~~~~~~~ 230 (357)
T 2e87_A 218 IIDTPGLLDRPIS 230 (357)
T ss_dssp EEECTTTSSSCST
T ss_pred EEeCCCccccchh
Confidence 9999999875543
No 14
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.47 E-value=4e-14 Score=139.18 Aligned_cols=59 Identities=37% Similarity=0.576 Sum_probs=50.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~~ 275 (383)
...+|+|||+||||||||||+|++.+ +.+++.||||+++.. +.. +..+.++||||++..
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 34689999999999999999999876 789999999999754 333 567999999999864
No 15
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.09 E-value=4.7e-11 Score=121.07 Aligned_cols=59 Identities=31% Similarity=0.400 Sum_probs=29.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~ 274 (383)
..++|+++|+||||||||+|+|++.....+++.||||++... +.+ +..+.++||||+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 457899999999999999999999877789999999999743 333 45789999999964
No 16
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.09 E-value=2.5e-11 Score=123.18 Aligned_cols=58 Identities=40% Similarity=0.583 Sum_probs=49.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i 273 (383)
..++|++||+||||||||+|+|++.+...+++.||||++.. .+.+ +..+.++||||+.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 35789999999999999999999987778999999999963 3344 4578999999997
No 17
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.03 E-value=8.7e-11 Score=117.93 Aligned_cols=56 Identities=38% Similarity=0.574 Sum_probs=35.4
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~ 274 (383)
+|++||.||||||||+|+|++++...+++.||+|++.... .. +..+.++||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 6999999999999999999988767789999999996433 33 55789999999874
No 18
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.02 E-value=2.3e-10 Score=109.34 Aligned_cols=58 Identities=40% Similarity=0.599 Sum_probs=48.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~ 275 (383)
.+|++||.||||||||+|+|++.+...+++.|+||++.... .. +..+.++||||+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 36999999999999999999998877789999999985431 12 446889999999754
No 19
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.01 E-value=2.2e-10 Score=106.14 Aligned_cols=60 Identities=27% Similarity=0.247 Sum_probs=42.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCC-CceeEEEEEEe---CCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-gtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
..++|++||.||||||||+|+|++.+...++..+ |+|++.+.... +..+.++||||+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 4678999999999999999999988755544433 58887654332 457899999999753
No 20
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.98 E-value=4.2e-10 Score=105.93 Aligned_cols=58 Identities=31% Similarity=0.513 Sum_probs=49.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~ 63 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcc
Confidence 4689999999999999999999876 689999999998754333 567899999999754
No 21
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.98 E-value=8.8e-11 Score=118.61 Aligned_cols=59 Identities=36% Similarity=0.510 Sum_probs=44.7
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-CCcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i~ 274 (383)
..++|+++|+||||||||+|+|++.....+++.||+|++.. .+.+ +..+.++||||+..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 45789999999999999999999887777999999999963 3333 45789999999954
No 22
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.97 E-value=5.4e-10 Score=98.25 Aligned_cols=61 Identities=33% Similarity=0.588 Sum_probs=43.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccccCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~ 276 (383)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++......+.++.++||||+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence 45789999999999999999999875 45678899999998888888899999999986543
No 23
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.97 E-value=1.9e-09 Score=94.34 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=53.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccccCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~ 276 (383)
..++|+++|.+|||||||+|+|++.....+++.+|+|++......+..+.++||||+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAK 82 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCcccc
Confidence 3468999999999999999999988767788999999999888888899999999986543
No 24
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.96 E-value=4.5e-10 Score=101.18 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=51.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeC----CcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~----~~i~l~DTpG~i~~ 275 (383)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++.....+. ..+.|+||||+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 35689999999999999999999876 45789999999998776664 67999999998654
No 25
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.96 E-value=5.5e-10 Score=106.91 Aligned_cols=60 Identities=38% Similarity=0.594 Sum_probs=49.6
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e--CCcEEEEecCccccCC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F--GKDLEFLDSPGIIPMR 276 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~--~~~i~l~DTpG~i~~~ 276 (383)
+-.|+++|.||||||||+|+|++.+...+++.|++|++..... . +..+.++||||+..+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 3469999999999999999999988777899999999854322 2 3468999999998654
No 26
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.96 E-value=6.8e-10 Score=96.55 Aligned_cols=58 Identities=31% Similarity=0.471 Sum_probs=47.5
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC-CcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-KDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-~~i~l~DTpG~i~ 274 (383)
..+|+++|.+|||||||+|+|++.....+++.||+|++.. .+.++ ..+.++||||+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 4689999999999999999999876556788999998853 34443 4688999999964
No 27
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.94 E-value=5.8e-10 Score=104.01 Aligned_cols=57 Identities=32% Similarity=0.441 Sum_probs=47.6
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCccccCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMR 276 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~~~ 276 (383)
+|+++|.||||||||+|+|++.. ..+++.||+|.+..... . +..+.++||||+....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 69999999999999999999875 67999999998865433 3 4568999999997544
No 28
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.94 E-value=3e-10 Score=113.94 Aligned_cols=57 Identities=37% Similarity=0.539 Sum_probs=34.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
++|++||.||||||||+|+|++.....+++.||+|++...... +..+.++||||+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 4799999999999999999999877779999999999776554 45799999999974
No 29
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.91 E-value=2e-09 Score=100.73 Aligned_cols=60 Identities=27% Similarity=0.388 Sum_probs=50.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
..++|+++|.+|||||||+|+|++.....+++.+++|.+.....+ +..+.++||||+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 357899999999999999999998876778889999987655443 346899999999754
No 30
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.90 E-value=1.8e-09 Score=98.95 Aligned_cols=62 Identities=24% Similarity=0.391 Sum_probs=42.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCC--CceeEEEEEE--e-CCcEEEEecCccccCCCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVR--F-GKDLEFLDSPGIIPMRIS 278 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--gtT~~~~~~~--~-~~~i~l~DTpG~i~~~~~ 278 (383)
..++|+++|.+|||||||+|+|++... ..+..+ ++|++..... . +..+.|+||||+......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 94 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP 94 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC
Confidence 457899999999999999999998764 455555 7888765433 3 457999999999865443
No 31
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.90 E-value=2.2e-09 Score=100.08 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=49.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~ 275 (383)
..++|+++|.+|||||||+|+|++.....+++.+++|.+.....+ +..+.|+||||+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 457899999999999999999999887778899999988654333 457899999999754
No 32
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=6.7e-10 Score=110.08 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=30.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE----E-------------------eC----CcEEEEecC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV----R-------------------FG----KDLEFLDSP 270 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~----~-------------------~~----~~i~l~DTp 270 (383)
++|++||.||||||||+|+|++.+ +.+++.||||++.... . ++ ..+.++|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 369999999999999999999877 7889999999985321 1 01 258899999
Q ss_pred cccc
Q 016762 271 GIIP 274 (383)
Q Consensus 271 G~i~ 274 (383)
|+..
T Consensus 80 G~~~ 83 (397)
T 1wxq_A 80 GLVP 83 (397)
T ss_dssp ----
T ss_pred Cccc
Confidence 9974
No 33
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.88 E-value=1.2e-09 Score=104.29 Aligned_cols=56 Identities=32% Similarity=0.456 Sum_probs=46.3
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i 273 (383)
..|+|||.||||||||+|+|++.+...+++.|++|++... +.. +..+.++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 3699999999999999999999887778899999987432 222 3468899999986
No 34
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=1.1e-09 Score=106.91 Aligned_cols=56 Identities=41% Similarity=0.564 Sum_probs=41.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC------------------CcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~------------------~~i~l~DTpG~i~ 274 (383)
.+|+|||.||||||||+|+|++.. +.+++.||+|.+... +.+. ..+.++||||+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 579999999999999999999876 789999999998642 2332 3589999999985
No 35
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.87 E-value=3.3e-09 Score=99.81 Aligned_cols=58 Identities=38% Similarity=0.493 Sum_probs=48.7
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--CCcEEEEecCccccC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--~~~i~l~DTpG~i~~ 275 (383)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||.-..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCcc
Confidence 4689999999999999999999865 578999999998655444 457999999998643
No 36
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.86 E-value=3e-09 Score=99.26 Aligned_cols=59 Identities=37% Similarity=0.540 Sum_probs=48.8
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~ 276 (383)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+-...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence 4689999999999999999999865 568999999998754433 4478999999997543
No 37
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.85 E-value=9.9e-10 Score=110.76 Aligned_cols=58 Identities=36% Similarity=0.528 Sum_probs=38.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
.++|+|||.||||||||+|+|+++....+++.||+|++...... +..+.++||||+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~ 83 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 83 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC---
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC
Confidence 35799999999999999999999877779999999999877665 45799999999873
No 38
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.85 E-value=2.2e-09 Score=111.01 Aligned_cols=58 Identities=28% Similarity=0.391 Sum_probs=42.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCce----eEEE-EE-----EeCCcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT----RVLK-WV-----RFGKDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT----~~~~-~~-----~~~~~i~l~DTpG~i~~ 275 (383)
...+|+|||+||||||||||+|+|.... + +.+|+| +.+. |. ..+..+.|+||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 4567999999999999999999997642 1 444444 4442 21 12457999999999854
No 39
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.85 E-value=2.9e-09 Score=98.73 Aligned_cols=61 Identities=18% Similarity=0.351 Sum_probs=47.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-ceeEEEE--EEe-CCcEEEEecCccccCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKW--VRF-GKDLEFLDSPGIIPMR 276 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-tT~~~~~--~~~-~~~i~l~DTpG~i~~~ 276 (383)
..++|+|+|.||||||||+|+|++.....++..|+ +|++... ... +..+.++||||+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 45789999999999999999999877666666666 7877543 222 4579999999998654
No 40
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.84 E-value=2.9e-09 Score=99.90 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=38.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCC-------CCCceeEEEEEEe--CC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRF--GK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-------~pgtT~~~~~~~~--~~---~i~l~DTpG~i 273 (383)
..++|++||.||||||||+|+|++.+...... .++++.+.....+ +. .+.++||||+-
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 45789999999999999999999876544332 3444444444333 22 68999999994
No 41
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.83 E-value=4.3e-09 Score=103.95 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=50.0
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC------------------CcEEEEecCcccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIP 274 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~------------------~~i~l~DTpG~i~ 274 (383)
....+++|||.||||||||||+|++...+.+++.||+|+++. .+.+. ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 446789999999999999999999987668999999999853 33333 2579999999985
Q ss_pred C
Q 016762 275 M 275 (383)
Q Consensus 275 ~ 275 (383)
.
T Consensus 98 ~ 98 (392)
T 1ni3_A 98 G 98 (392)
T ss_dssp C
T ss_pred C
Confidence 4
No 42
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.82 E-value=3.8e-09 Score=92.10 Aligned_cols=55 Identities=35% Similarity=0.510 Sum_probs=47.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~ 274 (383)
++|+++|.+|||||||+|+|.+.. ..++..||+|.+...+... .+.++||||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCccc
Confidence 479999999999999999999765 6778889999988877766 899999999754
No 43
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.82 E-value=2.2e-09 Score=105.98 Aligned_cols=60 Identities=32% Similarity=0.385 Sum_probs=34.3
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe------------------CCcEEEEecCcccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF------------------GKDLEFLDSPGIIP 274 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~------------------~~~i~l~DTpG~i~ 274 (383)
....+|+|||.||||||||+|+|++.+ +.+++.||+|.++.. +.+ ...+.++||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 345789999999999999999999876 488999999987533 222 22489999999986
Q ss_pred C
Q 016762 275 M 275 (383)
Q Consensus 275 ~ 275 (383)
.
T Consensus 99 ~ 99 (396)
T 2ohf_A 99 G 99 (396)
T ss_dssp -
T ss_pred c
Confidence 4
No 44
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.81 E-value=6.4e-09 Score=97.38 Aligned_cols=60 Identities=33% Similarity=0.443 Sum_probs=49.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCCC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 277 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~~ 277 (383)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+.....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 3579999999999999999999876 488999999998754332 45689999999975443
No 45
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.79 E-value=3.8e-09 Score=94.11 Aligned_cols=59 Identities=24% Similarity=0.443 Sum_probs=39.7
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~ 274 (383)
...+|+++|.+|||||||+|+|++.. ...+.+.+|+|+....+.++..+.++||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 35679999999999999999999865 455688899998876666656899999999864
No 46
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.79 E-value=8.7e-09 Score=88.54 Aligned_cols=57 Identities=32% Similarity=0.563 Sum_probs=40.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-CCcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i~~ 275 (383)
.+|+++|.+|||||||+|+|++.. ..++..||+|.+.. .+.. +..+.++||||....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 579999999999999999999754 46778899888743 2333 446889999998753
No 47
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.78 E-value=1.9e-09 Score=105.01 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=22.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~ 239 (383)
....|+|+|+||||||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 48
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.76 E-value=5.6e-09 Score=88.40 Aligned_cols=57 Identities=47% Similarity=0.589 Sum_probs=38.1
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
.+|+++|.+|||||||+|+|.+.....+++.+++|.+.....+ +..+.++||||...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 4799999999999999999998765567888999988654433 45789999999975
No 49
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.74 E-value=2.6e-09 Score=103.75 Aligned_cols=56 Identities=30% Similarity=0.456 Sum_probs=46.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC--CcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~i~l~DTpG~i~ 274 (383)
.+|+|||+||||||||||+|++.+ ..+++.||+|.+... +.++ ..+.++||||++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 369999999999999999999765 567899999998654 3443 5799999999975
No 50
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.74 E-value=3.5e-09 Score=99.91 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc-----ccCCCCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v~~~pg 250 (383)
..++|++||.||||||||+|+|++.... .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 4568999999999999999999987654 4455675
No 51
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.73 E-value=2e-08 Score=87.57 Aligned_cols=58 Identities=31% Similarity=0.540 Sum_probs=46.9
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCccccC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~~ 275 (383)
.++|+++|.+|||||||+|+|++.. ..++..||+|.+..... . +..+.++||||....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 4689999999999999999999764 56788899998865433 3 456889999998654
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.73 E-value=1.4e-08 Score=87.13 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=41.1
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~ 274 (383)
.++|+++|.+|||||||+|+|.+.......+.+|+|.....+.++. .+.++||||.-.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 5789999999999999999999877656667788887666666643 478999999854
No 53
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.72 E-value=1e-08 Score=93.06 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=42.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|++.. ..+++.+++|++...... +..+.++||||+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 45789999999999999999999875 447788999998765433 34689999999964
No 54
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.69 E-value=1.9e-08 Score=97.97 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=28.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-----ccCCCCC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v~~~pg 250 (383)
.++|++||.||||||||+|+|+|.+.. .++..|+
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 468999999999999999999987654 4455566
No 55
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.68 E-value=2.4e-08 Score=94.96 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~ 242 (383)
..++|++||.||||||||+|+|+|...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 346899999999999999999998765
No 56
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.66 E-value=7.6e-09 Score=101.42 Aligned_cols=57 Identities=39% Similarity=0.509 Sum_probs=45.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EE----------------------eCCcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VR----------------------FGKDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~----------------------~~~~i~l~DTpG~i 273 (383)
++|++||.||||||||+|+|++.. +.+++.||+|.+... .. .+..+.++||||++
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 368999999999999999999864 678999999987432 22 13468999999998
Q ss_pred cC
Q 016762 274 PM 275 (383)
Q Consensus 274 ~~ 275 (383)
..
T Consensus 81 ~~ 82 (368)
T 2dby_A 81 KG 82 (368)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 57
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.66 E-value=3.3e-08 Score=84.23 Aligned_cols=58 Identities=24% Similarity=0.425 Sum_probs=45.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+... ....+..|+|.....+... ..+.++||||.-
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 357899999999999999999997652 2346677877776665654 357899999984
No 58
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.63 E-value=2.6e-08 Score=87.15 Aligned_cols=106 Identities=16% Similarity=0.037 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~D 158 (383)
....+.+||..- + ..........+..+|++++|+|+..+.+.... .+..+. .+.|+++|+||+|
T Consensus 62 ~~~~~~i~Dt~G---~------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 132 (195)
T 1x3s_A 62 NKAKLAIWDTAG---Q------ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132 (195)
T ss_dssp EEEEEEEEEECS---S------GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred eEEEEEEEeCCC---c------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence 345678888432 2 22233344678999999999999765433221 122222 2568899999999
Q ss_pred CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+..... ......+....+..++.+|+++|.|+.++.+.+.+.
T Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (195)
T 1x3s_A 133 KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK 175 (195)
T ss_dssp SSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 954321 122334445567888999999999999887665543
No 59
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.63 E-value=3.2e-08 Score=84.21 Aligned_cols=58 Identities=26% Similarity=0.146 Sum_probs=34.9
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC--CcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~--~~i~l~DTpG~i~ 274 (383)
.++|+++|.+|||||||+|+|++.....+.+.+|+|.......-+ ..+.++||||.-.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence 358999999999999999999987766778888998864432222 2467999999753
No 60
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.59 E-value=4.5e-08 Score=100.88 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=34.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc--ccCCCCCceeEE
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL 255 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~--~v~~~pgtT~~~ 255 (383)
..++|+|+|.+|||||||+|+|++.+.. .+++.|+||+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~ 105 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV 105 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE
Confidence 4578999999999999999999988754 588899987753
No 61
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.56 E-value=9.9e-08 Score=81.06 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=42.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|+|.+.... ...+..|.+.....+.++. .+.++||||.-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 468999999999999999999976522 2344556655555555543 57899999964
No 62
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.55 E-value=9.8e-08 Score=101.03 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=33.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgt 251 (383)
..++|+|+|.||||||||+|+|+|...+.++..|+|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 467899999999999999999999988888889988
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.54 E-value=1.4e-07 Score=79.68 Aligned_cols=55 Identities=22% Similarity=0.278 Sum_probs=37.6
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|+|.+.... .....++.+. ..+.++. .+.++||||.-
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 468999999999999999999976422 2333333332 2333332 37899999964
No 64
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.54 E-value=5.4e-07 Score=80.73 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhh---cCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr---~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL 159 (383)
.+..+.+||...-...-.+.. .......+...+.. +|++++|+|+..+.......+..++. +.|+++|+||+|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 356788999653211111111 23334444455544 88899999999876655555555553 6899999999999
Q ss_pred CCHHHHHHH----HHHHHH-------cCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 160 ISMADRNAW----ATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 160 ~~~~~~~~w----~~~l~~-------~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
.+....... .+.+.. .+..++++|+++|.|+.+|.+.+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 157 LTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 987654332 233333 235688999999999999987776554
No 65
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=8.6e-08 Score=84.24 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=46.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... ....+.+|+|.....+..+ ..+.++||||.-
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 357899999999999999999997652 2466778888877666653 257899999964
No 66
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.53 E-value=3.5e-08 Score=84.99 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=43.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i 273 (383)
...+|+++|.+|||||||+|+|++.. ......+++|.+... +.. +..+.++||||.-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 46789999999999999999999764 455566777766432 333 4568899999974
No 67
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.53 E-value=6e-08 Score=84.95 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=44.8
Q ss_pred CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc--ccCCCCCceeEEEEEEeCCcE
Q 016762 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKWVRFGKDL 264 (383)
Q Consensus 187 g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~--~v~~~pgtT~~~~~~~~~~~i 264 (383)
...+..+.+.+.++...... +.....++|+++|.+|||||||+|+|.+.... ..+..|++|.+. .+..+
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ 93 (193)
T 2ged_A 23 KRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGV 93 (193)
T ss_dssp TTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTC
T ss_pred HHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeE
Confidence 34455555555544332211 11234678999999999999999999976522 123445555443 34578
Q ss_pred EEEecCccccC
Q 016762 265 EFLDSPGIIPM 275 (383)
Q Consensus 265 ~l~DTpG~i~~ 275 (383)
.++||||....
T Consensus 94 ~l~Dt~G~~~~ 104 (193)
T 2ged_A 94 TLVDFPGHVKL 104 (193)
T ss_dssp SEEEETTCCBS
T ss_pred EEEECCCCchH
Confidence 89999998643
No 68
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.53 E-value=1.3e-07 Score=80.30 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=43.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++..... ..+..|++.....+.++. .+.++||||.-
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35789999999999999999999754322 335566666655555543 57899999964
No 69
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.52 E-value=1.2e-07 Score=80.82 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=39.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.......+..|.+. ..+.. +..+.++||||.-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECCEEEEEEECCCCh
Confidence 45789999999999999999998765433333333332 22233 4568899999974
No 70
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.52 E-value=7.2e-08 Score=92.05 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=46.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~i 273 (383)
..+|+++|.+|||||||+|+|++.....+++.+|+|.+.....+ +..+.++||||.-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 46899999999999999999987755667788999998765433 2357899999974
No 71
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.50 E-value=1.7e-07 Score=80.80 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=42.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.........|.++.+... +.++. .+.++||||.-
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 457899999999999999999998764334445655555432 33443 57899999963
No 72
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.49 E-value=1.5e-07 Score=80.86 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=41.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.. ......|++|.+.. .+..+. .+.++||||.-
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 45789999999999999999999765 34555677766653 334433 57899999964
No 73
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.49 E-value=4.1e-08 Score=97.97 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=38.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CC-cEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~i~l~DTpG~i~~ 275 (383)
..++|+++|.+|||||||+|+|++.....+++.+|+|.+.....+ +. .+.++||||+...
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 356899999999999999999998876678899999998654333 23 7899999999743
No 74
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.48 E-value=2.2e-07 Score=79.66 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=41.7
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+..... ..+..|.+.....+..+. .+.++||||.-
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 35789999999999999999999765321 233345555555555543 57899999964
No 75
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.47 E-value=2.5e-07 Score=80.15 Aligned_cols=56 Identities=23% Similarity=0.213 Sum_probs=40.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. .....+++|.+... +.++. .+.++||||.-
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcH
Confidence 35789999999999999999999765 34555666655432 23332 26689999964
No 76
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.47 E-value=1.9e-07 Score=81.19 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=39.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.......+..|.+.. .+.. +..+.++||||.-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEECCEEEEEEECCCCH
Confidence 457899999999999999999997663333344443322 2223 4468899999973
No 77
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.47 E-value=2.4e-07 Score=79.50 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=38.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. ......|.++.+ ...+.++. .+.++||||.-
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 35789999999999999999999754 233333444433 33444444 68899999953
No 78
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.47 E-value=2.8e-07 Score=80.74 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=41.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeC---CcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~---~~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|++...... .+..|++.....+.++ ..+.++||||.-.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 457999999999999999999997653322 2333554444444443 3578999999853
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.46 E-value=1.5e-07 Score=84.63 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=45.8
Q ss_pred CceEEeEeecCCCChhHHHHhhh-cCCccccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~-~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|++. +.......+.+|+|.......++. .+.++||||.-
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChH
Confidence 45789999999999999999954 443445678889998877666543 57899999964
No 80
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.46 E-value=3.2e-07 Score=97.34 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=38.7
Q ss_pred eCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCC
Q 016762 183 NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP 247 (383)
Q Consensus 183 Sa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~ 247 (383)
++..+.|++++...+.++......... ...-..++|++||++|+|||||+|+|+|.....++.
T Consensus 19 ~~~~~~~~~~li~~inkl~d~l~~lg~--~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~ 81 (772)
T 3zvr_A 19 SHMGNRGMEDLIPLVNRLQDAFSAIGQ--NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 81 (772)
T ss_dssp ------CGGGHHHHHHHHHHHHHTTTC--CGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSS
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCc--cccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCC
Confidence 345567788887777776543322111 111245689999999999999999999976544443
No 81
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.46 E-value=1.3e-07 Score=82.56 Aligned_cols=56 Identities=27% Similarity=0.400 Sum_probs=41.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.....+.+..|.+... +.. +..+.++||||.-
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~--~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEETTEEEEEEECSSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEE--EEECCEEEEEEECCCCH
Confidence 4578999999999999999999987544455566655332 222 4468899999974
No 82
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.45 E-value=1.4e-07 Score=80.18 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=37.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~ 274 (383)
.++|+++|.+|||||||+|+|.+.. ......|.++.+.. .+..+. .+.++||||.-.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 4689999999999999999999764 33444555555543 334433 478899999753
No 83
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.45 E-value=2.9e-07 Score=79.30 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=40.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++...... ....|++.....+.++. .+.++||||.-
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 357899999999999999999997653221 22334444444444432 58899999964
No 84
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.44 E-value=3.6e-07 Score=77.24 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=38.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|+|.+... ....++++.+.. .+.++. .+.++||||.-
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 46899999999999999999997652 334444444432 223333 57899999964
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.44 E-value=1.8e-07 Score=81.30 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=42.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.......+..|.+... +.. +..+.++||||.-
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE--IVINNTRFLMWDIGGQE 76 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE--EEETTEEEEEEEESSSG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE--EEECCEEEEEEECCCCH
Confidence 4578999999999999999999987654556666655432 222 4578899999984
No 86
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.44 E-value=3.3e-07 Score=77.69 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=39.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|.+.. ......|.++.+. ..+..+. .+.++||||.-.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 35789999999999999999999754 2222233333332 3333333 578999999753
No 87
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.43 E-value=1.7e-07 Score=81.09 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=39.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|++.......+..|.+.. .+.. +..+.++||||...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETTEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEECCEEEEEEECCCCHh
Confidence 467899999999999999999997655455556664432 2233 45688999999853
No 88
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.43 E-value=3.8e-07 Score=79.63 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=42.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+... ..+.++||||.-
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 3578999999999999999999976532 223445666555554443 257899999964
No 89
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.43 E-value=2.4e-07 Score=78.94 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=39.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. ......|.++.+. ..+.++. .+.++||||.-
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 45789999999999999999999764 2333344444443 3344432 46788999963
No 90
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.43 E-value=3.7e-07 Score=78.27 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=41.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|+|++.. ......+.++.+.. .+.++. .+.++||||.-
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 4789999999999999999999654 33444566665543 333443 57899999964
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=2.2e-07 Score=81.09 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=39.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.......+..|.+.. .+.. +..+.++||||.-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINNTRFLMWDIGGQE 71 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEETTEEEEEEECCC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEECCEEEEEEECCCCH
Confidence 357899999999999999999997654444455554432 2222 4568899999985
No 92
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.42 E-value=2.6e-07 Score=81.59 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=37.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... ....+..|++.....+.++. .+.++||||.-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 357899999999999999999997652 23445556666555555543 47899999964
No 93
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.42 E-value=4.1e-07 Score=79.46 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=40.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+..... ..+..+++.....+.++. .+.++||||.-
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 35789999999999999999999754321 222333333344444443 57899999963
No 94
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.42 E-value=3.9e-07 Score=77.22 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=37.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~ 274 (383)
.++|+++|.+|||||||+|+|.+... ......++.+.. .+.++. .+.++||||...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence 46899999999999999999997542 222333333322 222322 478999999753
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.42 E-value=2.2e-07 Score=81.06 Aligned_cols=56 Identities=27% Similarity=0.425 Sum_probs=39.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||.-
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEETTEEEEEEEECCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEECCEEEEEEECCCCH
Confidence 357899999999999999999987654333333343322 2223 4578899999974
No 96
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=2.1e-07 Score=79.15 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=36.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc--ccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~--~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|+|++.... .......+++.. ...+ ..+.++||||.-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV--ISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE--EEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE--EEECCEEEEEEEEECCCch
Confidence 468999999999999999999975421 112222233222 2222 247899999974
No 97
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.41 E-value=3.3e-07 Score=78.70 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=41.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|++.. ...+.+++|.+.. .+..+. .+.++||||.-.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence 35789999999999999999999764 3455566665532 233332 577899999753
No 98
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.41 E-value=4.7e-07 Score=79.93 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=42.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.... ...+..|+|.....+..+. .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 3578999999999999999999976532 2234446565555555432 57899999974
No 99
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.41 E-value=3e-07 Score=80.42 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=42.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. ......+++|.+.. .+..+. .+.++||||.-
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999999754 34455566665543 444443 57899999964
No 100
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.41 E-value=4.5e-07 Score=78.33 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=39.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|++.. ..+..+.++.+. ..+..+. .+.++||||.-.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchh
Confidence 35689999999999999999999654 234444444332 2333332 467999999753
No 101
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.40 E-value=4.6e-07 Score=79.02 Aligned_cols=57 Identities=28% Similarity=0.335 Sum_probs=41.7
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|+|++.... ...+..|++.....+.++. .+.++||||.-
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCch
Confidence 478999999999999999999976522 2334445555555555543 47899999975
No 102
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.40 E-value=4.7e-07 Score=78.48 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=41.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.. ......+.++.+. ..+..+. .+.++||||.-
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35789999999999999999999765 3334445555443 3344443 57899999963
No 103
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.40 E-value=4.1e-07 Score=79.52 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=38.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+....... ...|.+. ..+.. +..+.++||||.-
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCST
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCH
Confidence 4578999999999999999999976522222 1223332 22233 4578999999964
No 104
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.40 E-value=4.9e-07 Score=78.92 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
..++|+++|.+|||||||+|+|++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 46789999999999999999999865
No 105
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.39 E-value=3.4e-07 Score=80.90 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=40.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. ......+.++.+.. .+.++. .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 45789999999999999999999765 23334455555543 333332 57899999964
No 106
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.39 E-value=6.4e-07 Score=75.37 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=37.1
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|+|.+... ....+.++.+. ..+..+. .+.++||||.-
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCch
Confidence 5799999999999999999997642 23333444332 2233332 36789999964
No 107
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.39 E-value=3.8e-07 Score=80.18 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=41.1
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i~ 274 (383)
..+|+++|.+|||||||+|+|.+.......+..+.+.. .+.. +..+.++||||.-.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--ELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--EEEETTEEEEEEECCCSGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeE--EEEECCEEEEEEECCCCHH
Confidence 45799999999999999999998765445555555532 3333 34688999999853
No 108
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.38 E-value=3.9e-07 Score=81.20 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=41.7
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC----CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~----~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. .....+.++.+...+.++ ..+.++||||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 35689999999999999999999765 344455566665555554 248999999974
No 109
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.38 E-value=5.3e-07 Score=79.96 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=41.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|.+.. ......|++|.+. ..+.++. .+.++||||.-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 45789999999999999999999764 3344455555554 3344443 578999999753
No 110
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.38 E-value=4.4e-06 Score=72.59 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=72.3
Q ss_pred CCcEEEEcCCC-CCcCCCchHHHHHHHHHHHHhh---hcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSL-RPVQWYPGHIAKTEKELKDQLK---LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L-~~~qw~Pgh~~~~~~~l~~~id---r~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~ 160 (383)
+..+.+||..- ....|-..............+. .+|++++|+|+..+.......+..++. +.|+++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 44677888643 1122222222333333344444 459999999998766555555555543 78999999999998
Q ss_pred CHHHHHHHHH----HHHHcC-CeEEEeeCcCCCchhhhhHHHHHh
Q 016762 161 SMADRNAWAT----YFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 161 ~~~~~~~w~~----~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+..+.....+ .+...+ ..++++|+++|.|+.++.+.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 191 (195)
T 3pqc_A 147 KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTL 191 (195)
T ss_dssp CGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHH
Confidence 7654433322 232223 578999999999999887666543
No 111
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.37 E-value=4.7e-07 Score=79.54 Aligned_cols=57 Identities=28% Similarity=0.368 Sum_probs=37.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCC--CceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... .....+ |++.....+.++. .+.++||||.-
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 357899999999999999999997653 222233 3344444445543 57899999964
No 112
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.37 E-value=3e-07 Score=95.45 Aligned_cols=135 Identities=17% Similarity=0.126 Sum_probs=90.5
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH-hcCCCeEEEEEccCCCCHH--
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW-LGNRKRILVLNREDMISMA-- 163 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~-l~~k~~ilVlNK~DL~~~~-- 163 (383)
..+.+||. ||| ..+..++...+..+|.+++|+|+..+....... +... ..+.|+++|+||+|+....
T Consensus 71 ~~l~liDT--------PGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~ 141 (599)
T 3cb4_D 71 YQLNFIDT--------PGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPE 141 (599)
T ss_dssp EEEEEEEC--------CCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHH
T ss_pred EEEEEEEC--------CCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHH
Confidence 45567773 666 456667778899999999999998776543322 2222 2478999999999997532
Q ss_pred -HHHHHHHHHHHcCC---eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeec---CCCChhHHHHh
Q 016762 164 -DRNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY---PNVGKSSLINR 236 (383)
Q Consensus 164 -~~~~w~~~l~~~g~---~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~---pNvGKSTLiN~ 236 (383)
....|.+.+ +. .++++|+++|.|+.+|.+.+.+..... .+....+++..+... +++|+.++++.
T Consensus 142 ~v~~ei~~~l---g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p------~~~~~~p~~alI~d~~~d~~~G~v~~~rV 212 (599)
T 3cb4_D 142 RVAEEIEDIV---GIDATDAVRCSAKTGVGVQDVLERLVRDIPPP------EGDPEGPLQALIIDSWFDNYLGVVSLIRI 212 (599)
T ss_dssp HHHHHHHHHT---CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC------CCCTTSCCEEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHHHh---CCCcceEEEeecccCCCchhHHHHHhhcCCCc------cccccCCceeeeeeccccccccEEEEEEE
Confidence 233343332 43 489999999999998876655443221 111234555555555 89999999998
Q ss_pred hhcC
Q 016762 237 LLKR 240 (383)
Q Consensus 237 L~~~ 240 (383)
+.|.
T Consensus 213 ~sG~ 216 (599)
T 3cb4_D 213 KNGT 216 (599)
T ss_dssp EESC
T ss_pred EeCE
Confidence 8764
No 113
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.37 E-value=2.3e-07 Score=92.35 Aligned_cols=56 Identities=38% Similarity=0.587 Sum_probs=45.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC--CcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~i~l~DTpG~i~ 274 (383)
..|+|||+||||||||||+|++.. ..+++.|++|.+... +..+ ..+.+.||||++.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 358999999999999999999865 468899999988653 3333 5689999999975
No 114
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.36 E-value=7.4e-07 Score=76.92 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=40.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.. .....+++|.+... +.++. .+.++||||.-
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 35789999999999999999999765 23444555544322 23333 57899999964
No 115
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.36 E-value=7.7e-07 Score=78.38 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=40.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.. .....+++|.+.. .+.++. .+.++||||.-
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence 45789999999999999999999765 3445555555532 233343 57899999964
No 116
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.35 E-value=3.5e-07 Score=91.65 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=43.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccc------------------------------cCCCCCceeEEEEEEe---CC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 262 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~------------------------------v~~~pgtT~~~~~~~~---~~ 262 (383)
..++|+++|.+|+|||||+|+|++..... ....+|+|.+.....+ +.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 45789999999999999999996532211 1223789998765544 45
Q ss_pred cEEEEecCccc
Q 016762 263 DLEFLDSPGII 273 (383)
Q Consensus 263 ~i~l~DTpG~i 273 (383)
.+.++||||..
T Consensus 96 ~~~iiDTPGh~ 106 (439)
T 3j2k_7 96 HFTILDAPGHK 106 (439)
T ss_pred EEEEEECCChH
Confidence 78999999974
No 117
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.35 E-value=3.4e-07 Score=81.15 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=36.7
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..+|+++|.+|||||||+|+|.+.......+..+.+.. .+.+ +..+.++||||.-
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcH
Confidence 46899999999999999999997654444455555533 2333 3478899999964
No 118
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.35 E-value=4.8e-07 Score=79.28 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=38.7
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcccc--CCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v--~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
...+|+++|.+|||||||+|+|++.....+ .+..|.+.. .+.. +..+.++||||.-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCH
Confidence 356899999999999999999998764443 444443332 2222 4468899999984
No 119
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.34 E-value=7.5e-07 Score=77.64 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=38.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|+|++.. ......++|.+.. .+..+. .+.++||||.-
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC--CccccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 4789999999999999999999764 2334445554432 233332 37899999964
No 120
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.34 E-value=4.1e-07 Score=81.33 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=41.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC----CcEEEEecCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM 275 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~----~~i~l~DTpG~i~~ 275 (383)
..++|+++|.+|||||||+|+|++.... ......+++......... ..+.++||||.-..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK 74 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence 4578999999999999999999965422 233455555544443332 24789999998643
No 121
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.33 E-value=7.5e-07 Score=79.15 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=39.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCc--EEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKD--LEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~--i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. ..+...++|.+.... .. +.. +.++||||.-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCch
Confidence 45789999999999999999999653 345555666554332 22 333 4599999984
No 122
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.33 E-value=6.3e-07 Score=78.48 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=40.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|++...... ....|++.....+.++. .+.++||||.-.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 457899999999999999999997653221 22234444444555543 578999999753
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.32 E-value=2.6e-06 Score=81.17 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=79.6
Q ss_pred CCcEEEEcCCCCC--cCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHHhc--CCCeEEEEEccCCC-
Q 016762 87 DADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMI- 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~--~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l-~~~l~--~k~~ilVlNK~DL~- 160 (383)
+..+++||..... ..|.. ..+.+.+.....+..+|++++|+|+..+.+..+..+ ...+. +.|+++|+||+|+.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~-l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDV-LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG 136 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCH-HHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSS
T ss_pred CCeEEEEECcCCCccccchh-HHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 6778899964321 11111 123344555677899999999999988766655554 44443 68999999999998
Q ss_pred CHHHHHHHHHHHHHc-C--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 161 SMADRNAWATYFAKQ-G--TKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 161 ~~~~~~~w~~~l~~~-g--~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
+......+.+.+.+. + ..++++|+++|.|+.+|.+.+.+..
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 137 PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 666655565555543 3 5789999999999999877766554
No 124
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.32 E-value=5e-07 Score=77.57 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=38.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeC----CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~----~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... .....|.++.+ ...+.++ ..+.++||||.-
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 457899999999999999999997542 11112222223 2333443 358899999964
No 125
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.32 E-value=8.2e-07 Score=78.61 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=41.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. ......|.++.+. ..+.++. .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 35789999999999999999999765 3334445544443 3444443 58899999964
No 126
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.32 E-value=5.1e-07 Score=77.58 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=36.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeC----CcEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~----~~i~l~DTpG~ 272 (383)
..++|+++|.+|||||||+|+|.+... .....|.++.+ ...+.++ ..+.++||||.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKY-SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC-CTTC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcC-CcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 457899999999999999999997642 22333333333 3333433 25789999995
No 127
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.31 E-value=1.9e-06 Score=85.20 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=73.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-HH---HHHHhcCCCeEEEEEccCCCCHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL---MDQWLGNRKRILVLNREDMISMA 163 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~-~~---l~~~l~~k~~ilVlNK~DL~~~~ 163 (383)
..+.+||. ||| +.+.+.+...+..+|++++|+|++.+....+ .+ +...+..+|+++|+||+|+.+.+
T Consensus 75 ~~~~iiDt--------PGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 75 RRISFIDA--------PGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp EEEEEEEC--------CCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred ceEEEEEC--------CCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH
Confidence 45778884 555 5667777788899999999999998653222 11 22223457899999999999877
Q ss_pred HHHHHHHHHHH----c---CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 164 DRNAWATYFAK----Q---GTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 164 ~~~~w~~~l~~----~---g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
....+.+.+.+ . +..++++|+++|.|+.+|.+.+.+.
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 146 EALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 55444433322 1 3578999999999999988777653
No 128
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.31 E-value=7.6e-07 Score=77.82 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=38.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.... ...+..|.+. ..+.. +..+.++||||.-
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCH
Confidence 4578999999999999999999976432 1223333332 22222 4468899999974
No 129
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.31 E-value=7.8e-07 Score=78.63 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=37.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe---CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~---~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.... .....++.... ...+ ...+.++||||.-
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 83 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD 83 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc
Confidence 4578999999999999999999976532 33333333322 2222 2246899999964
No 130
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.31 E-value=6.9e-07 Score=79.09 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=35.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. ......+.++.+ ...+.++. .+.++||||.-
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 45789999999999999999999754 233334444433 33444443 68899999974
No 131
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.30 E-value=1.3e-06 Score=75.52 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=37.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC-c--EEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK-D--LEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~-~--i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. .......++... .....+. . +.++||||.-
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCch
Confidence 45789999999999999999999753 233333333332 2233333 2 5569999964
No 132
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.30 E-value=7.2e-07 Score=75.52 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=36.9
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|+|.+.... ...|........+.. +..+.++||||.-
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCCCSSCCEEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccCcCceeEEEEEECCEEEEEEEcCCCh
Confidence 36999999999999999999875532 233321112222233 4578999999984
No 133
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=1.3e-06 Score=76.78 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=38.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeC---CcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~---~~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|++.... .....++.. ...+.++ ..+.++||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 3578999999999999999999976532 222222222 1223333 2478999999865
No 134
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=1.4e-06 Score=76.18 Aligned_cols=57 Identities=28% Similarity=0.312 Sum_probs=36.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++..... ..+..+.+.. ..+..+. .+.++||||.-
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSH 67 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGG
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChH
Confidence 45789999999999999999999754211 1111122211 1222222 57899999975
No 135
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.30 E-value=9.6e-07 Score=76.61 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=37.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE---EEEEeC------------CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFG------------KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~---~~~~~~------------~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+... .....+..+.+. ..+..+ ..+.++||||.-
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 357899999999999999999997542 222222222222 233332 258899999973
No 136
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.30 E-value=3.4e-07 Score=80.82 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=36.9
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
.++|++||.||||||||+|++.+.....++..+.++.+. ..+.++. .+.++||+|.-
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence 468999999999999999999975433344444444443 2334433 34689999964
No 137
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.29 E-value=9.3e-07 Score=76.09 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=39.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|++.......+..+.+. ...+.++. .+.++||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch
Confidence 35789999999999999999999765333333333322 22333432 467899999753
No 138
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.29 E-value=5.2e-07 Score=76.82 Aligned_cols=56 Identities=20% Similarity=0.033 Sum_probs=32.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~ 274 (383)
++|+++|.+|||||||+|+|++..... ...+.+|.+.. .+.++. .+.++||||.-.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 579999999999999999998654322 22233333332 233332 467899999853
No 139
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.7e-07 Score=96.28 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=43.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCC------------------------------CCCceeEEEEEEe---CC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------------------------------RPGVTRVLKWVRF---GK 262 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~------------------------------~pgtT~~~~~~~~---~~ 262 (383)
..++|++||.+|||||||+|+|++.......+ .+|+|.+.....+ +.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 46799999999999999999998653222211 3688988644333 45
Q ss_pred cEEEEecCccc
Q 016762 263 DLEFLDSPGII 273 (383)
Q Consensus 263 ~i~l~DTpG~i 273 (383)
.+.++||||..
T Consensus 246 ~~~iiDTPG~e 256 (611)
T 3izq_1 246 NFTIVDAPGHR 256 (611)
T ss_dssp EEEEEECCSSS
T ss_pred eEEEEECCCCc
Confidence 78999999984
No 140
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.28 E-value=1.3e-06 Score=77.85 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=40.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~ 272 (383)
..++|+++|.+|||||||+|+|++.. ......+.++.+. ..+.++. .+.++||||.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 35789999999999999999999754 3333444444443 3344443 5789999996
No 141
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.27 E-value=8.6e-07 Score=78.05 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=36.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|.+.. .....++||.+... +..+. .+.++||||.-.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 46789999999999999999999764 34555566655432 23333 466999999853
No 142
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.27 E-value=1.9e-07 Score=97.12 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=29.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcccc------------------------------CCCCCceeEEEEEEe---CC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~ 262 (383)
..++|+++|.+|+|||||+|+|++...... ...+|+|.+.....+ +.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 457899999999999999999974321111 125789998765444 35
Q ss_pred cEEEEecCccc
Q 016762 263 DLEFLDSPGII 273 (383)
Q Consensus 263 ~i~l~DTpG~i 273 (383)
.+.|+||||..
T Consensus 256 ~i~iiDTPGh~ 266 (592)
T 3mca_A 256 IYEIGDAPGHR 266 (592)
T ss_dssp ---CCEEESSS
T ss_pred EEEEEECCChH
Confidence 78999999964
No 143
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.26 E-value=3.7e-06 Score=73.36 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhc---CeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCH
Q 016762 89 DLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLM---DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (383)
Q Consensus 89 ~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr~---DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~ 162 (383)
.+.+||..--...-.+.. ...........+..+ |++++|+|+..+.+..+.++..++. +.|+++|+||+|+.+.
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 678888543110000111 233344444555555 9999999998876665555555543 6899999999999987
Q ss_pred HHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 163 ADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 163 ~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+.....+.+.+ .+..++++|+++|.|+.++.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 191 (195)
T 1svi_A 150 GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191 (195)
T ss_dssp GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHH
Confidence 654332222222 2467889999999999988766544
No 144
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.25 E-value=1.1e-06 Score=76.78 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=38.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|++.. ..+....|+.+.. .+.++. .+.++||||.-.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence 45789999999999999999999765 2344444554432 223332 467899999753
No 145
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.1e-06 Score=79.07 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=37.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCce--eEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... .....|.++ .....+.++. .+.++||||.-
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEF-NMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCC-CC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 357899999999999999999997653 222233333 3333444443 67899999964
No 146
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=3.5e-07 Score=80.15 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=41.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC---CcEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~ 272 (383)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+... ..+.++||||.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence 4579999999999999999999975421 122334556665555543 24889999995
No 147
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.24 E-value=5.2e-07 Score=79.06 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=70.6
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc------------CCC
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG------------NRK 149 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~------------~k~ 149 (383)
...+..+.+||..-. .+........+..+|++++|+|+.++.+..+ ..+..++. +.|
T Consensus 59 ~~~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 129 (199)
T 4bas_A 59 EKGRVAFTVFDMGGA---------KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP 129 (199)
T ss_dssp EETTEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC
T ss_pred EeCCEEEEEEECCCC---------HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC
Confidence 345667888885332 2233333456889999999999987654322 22333322 679
Q ss_pred eEEEEEccCCCCHHHHHHHHHHH------HHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 150 RILVLNREDMISMADRNAWATYF------AKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 150 ~ilVlNK~DL~~~~~~~~w~~~l------~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+++|+||+|+........+.+.+ ...+..++.+|+++|.|+.++.+.+.+.
T Consensus 130 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (199)
T 4bas_A 130 FLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQET 186 (199)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred EEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHH
Confidence 99999999998763333332222 2345678899999999999887665543
No 148
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.24 E-value=1e-06 Score=76.11 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=37.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC-C--cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-K--DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-~--~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... ......++.+.. .+.++ . .+.++||||.-
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 357899999999999999999996542 233333433322 22232 2 35699999984
No 149
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.24 E-value=5.3e-07 Score=79.72 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=39.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
..++|++||.+|||||||+|+|++.. ......|++|.+.. .+.++. .+.++||+|.-
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 35789999999999999999998643 22344566665543 233333 35678999984
No 150
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.24 E-value=3.1e-07 Score=79.47 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=25.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. ......|+++.+.. .+.++. .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 35789999999999999999999653 33344455665543 334433 57899999963
No 151
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.24 E-value=1.3e-06 Score=77.28 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=39.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+.++. .+.++||||.-
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 357899999999999999999997653 222334333332 2234433 57899999964
No 152
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.23 E-value=4.8e-07 Score=79.72 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=18.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCcee-EE--EEEEeCC-----cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VL--KWVRFGK-----DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~-~~--~~~~~~~-----~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+......+....||. +. ..+.++. .+.++||||.-
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 34789999999999999999999763223334444443 32 3344443 47899999973
No 153
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.23 E-value=1.5e-06 Score=76.21 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=37.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC-C--cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-K--DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-~--~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... ......|+.+.. .+..+ . .+.++||||.-
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 457899999999999999999997652 233333333322 22232 2 35899999953
No 154
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.22 E-value=1.6e-06 Score=77.01 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=35.7
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i 273 (383)
.++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+.++. .+.++||||.-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcH
Confidence 468999999999999999999976532 22222222222 1233433 57899999974
No 155
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.22 E-value=1.9e-06 Score=77.09 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=32.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
+.++|+++|.+|||||||+|+|++... ......++.+.. .+.++. .+.++||||.-
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 357899999999999999999997542 223333333322 233333 57899999964
No 156
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.22 E-value=9.4e-07 Score=79.70 Aligned_cols=56 Identities=18% Similarity=0.079 Sum_probs=37.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~ 272 (383)
.++|++||.+|||||||+|++.+.....+...+.++.+. ..+.++. .+.++||+|.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCC
Confidence 478999999999999999999975543344444444332 3334433 3568999985
No 157
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.22 E-value=1e-06 Score=89.31 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=39.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i 273 (383)
..++|++||.||||||||+|+|++.......+ |.+... +.. +..+.++||||.-
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~----T~~~~~~~~~~~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQD 377 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCC----CSSEEEEEEESSSCEEEEEEECCCG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCC----ccceeEEEEEeCCEEEEEEECCCcH
Confidence 45799999999999999999999876433333 444332 222 4578999999964
No 158
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.21 E-value=2.1e-06 Score=72.58 Aligned_cols=105 Identities=10% Similarity=0.056 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D 158 (383)
.+..+.+||..-. ..........+..+|++++|+|+.++.+... ..+..++. +.|+++|+||+|
T Consensus 42 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 42 KNISFTVWDVGGQ---------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp SSCEEEEEECCCC---------GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CCEEEEEEEcCCC---------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcC
Confidence 4567888985332 2233444567899999999999987643222 12333332 678999999999
Q ss_pred CCCHHHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+......+.+.+.. .+..++.+|+++|.|+.++.+.+.+
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (164)
T 1r8s_A 113 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158 (164)
T ss_dssp STTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence 9765333333333221 2345788999999999888666543
No 159
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.20 E-value=1.7e-06 Score=76.73 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=36.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+... .....+.++.+. ..+.++. .+.++||||.-
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999997542 222223222333 3344443 68899999964
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.20 E-value=5.9e-07 Score=91.09 Aligned_cols=58 Identities=26% Similarity=0.353 Sum_probs=41.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc------------------------------cccCCCCCceeEEEEEEe---CC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLKWVRF---GK 262 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~------------------------------~~v~~~pgtT~~~~~~~~---~~ 262 (383)
..++|+++|.+|+|||||+|+|++... ......+|+|.+.....+ +.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 357899999999999999999975411 122344688888655444 45
Q ss_pred cEEEEecCccc
Q 016762 263 DLEFLDSPGII 273 (383)
Q Consensus 263 ~i~l~DTpG~i 273 (383)
.+.++||||.-
T Consensus 112 ~~~iiDTPG~~ 122 (483)
T 3p26_A 112 NFTIVDAPGHR 122 (483)
T ss_dssp EEEEECCCCCG
T ss_pred eEEEEECCCcH
Confidence 78999999984
No 161
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.19 E-value=3e-06 Score=73.72 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH----HHHHHh-------cCCCeEEEE
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL-------GNRKRILVL 154 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~----~l~~~l-------~~k~~ilVl 154 (383)
....+.+||..-.. .+.......+..+|++++|+|+..+....+. .+..++ .+.|+++|+
T Consensus 72 ~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~ 142 (198)
T 3t1o_A 72 FKTRFHLYTVPGQV---------FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142 (198)
T ss_dssp CEEEEEEEECCSCC---------SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEE
T ss_pred CceEEEEEeCCChH---------HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEE
Confidence 45568889854332 2223334578999999999999743222221 122332 367999999
Q ss_pred EccCCCCHHHHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762 155 NREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 155 NK~DL~~~~~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
||+|+.+........+++...+. .++.+|+++|.|+.++.+.+.+
T Consensus 143 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 143 NKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSR 188 (198)
T ss_dssp ECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHH
T ss_pred EchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHH
Confidence 99999754333344444555676 8899999999999988665544
No 162
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.19 E-value=1.3e-06 Score=76.85 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=35.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEe-CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~-~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+...... .| |.+. ..+.. +..+.++||||.-
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNICFTVWDVGGQD 84 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcccc--CC--cCceeEEEEEECCEEEEEEECCCCH
Confidence 457899999999999999999986553222 22 3222 22222 3468899999984
No 163
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.18 E-value=8.4e-07 Score=79.20 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
..++|+++|.+|||||||+|+|++..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 45789999999999999999999754
No 164
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.18 E-value=8.2e-07 Score=77.55 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-------cCCCeEEEEEcc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNRE 157 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-------~~k~~ilVlNK~ 157 (383)
+..+.+||.... ..........+..+|++++|+|+.++.+... ..+..++ .+.|+++|+||+
T Consensus 66 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 136 (190)
T 2h57_A 66 SLSFTVFDMSGQ---------GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136 (190)
T ss_dssp SCEEEEEEECCS---------TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECT
T ss_pred CEEEEEEECCCC---------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCc
Confidence 467888985432 1222333456899999999999987533222 2233332 357999999999
Q ss_pred CCCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 158 DMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 158 DL~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
|+........+.+.+. ..+..++.+|+++|.|+.++.+.+.+.
T Consensus 137 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 137 DLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ 184 (190)
T ss_dssp TSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 9976433333333332 124578899999999999887766543
No 165
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.17 E-value=2.1e-07 Score=82.18 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=40.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. ......+++|.+. ..+..+. .+.++||||.-
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 45799999999999999999999754 3333344555443 3444443 57899999964
No 166
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.17 E-value=8.4e-07 Score=79.27 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=39.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccc--cCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~ 274 (383)
..++|+++|.+|||||||+|+|.+..... .+..|+++.+. ....+.++||||.-.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHH
Confidence 45789999999999999999999765221 13344444332 245789999999853
No 167
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.16 E-value=9.1e-07 Score=88.59 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.-|+|+|.+|+|||||+|.|.+.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 35899999999999999999864
No 168
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.14 E-value=4e-06 Score=72.59 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (383)
...+.+||.. |+ ..........+..+|++++|+|+..+.+..+. .+..+. .+.|+++|+||+|+
T Consensus 69 ~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (195)
T 3bc1_A 69 RIHLQLWDTA--------GL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL 139 (195)
T ss_dssp EEEEEEEEEC--------CS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred EEEEEEEeCC--------Cc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 4567888842 22 33344556778999999999999765443321 122222 36899999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+... .....++....+..++++|+++|.|+.++.+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 140 EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp GGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 75321 122223344557889999999999999887666544
No 169
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.14 E-value=3.5e-06 Score=73.50 Aligned_cols=105 Identities=8% Similarity=0.013 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (383)
.+..+.+||. ||+ .+........+..+|++++|+|+.++.+... ..+..++ .+.|+++|+||+|
T Consensus 65 ~~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 135 (188)
T 1zd9_A 65 GNVTIKLWDI--------GGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135 (188)
T ss_dssp TTEEEEEEEE--------CCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred CCEEEEEEEC--------CCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCC
Confidence 3567788884 232 3445555677899999999999976543322 1233332 3679999999999
Q ss_pred CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+........+.+.+. ..+..++++|+++|.|+.++.+.+.+
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 136 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181 (188)
T ss_dssp STTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred CccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHH
Confidence 986433333333332 12346788999999999988766544
No 170
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.14 E-value=2.9e-06 Score=82.49 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRM 242 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~ 242 (383)
.++|++||.+|||||||+|+|+|...
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 34899999999999999999998653
No 171
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.13 E-value=4.1e-06 Score=74.65 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh---------cCCCeEEEEEcc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---------GNRKRILVLNRE 157 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l---------~~k~~ilVlNK~ 157 (383)
...+.+||. ||+ ..........+..+|++++|+|+.++.+..+ +..++ .+.|+++|+||+
T Consensus 83 ~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~ 151 (217)
T 2f7s_A 83 KVHLQLWDT--------AGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKA 151 (217)
T ss_dssp EEEEEEEEE--------ESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECT
T ss_pred eEEEEEEEC--------CCc-HhHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECC
Confidence 456778873 554 4556666688999999999999876543222 22222 256899999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
|+.+... .....++....+..++.+|+++|.|+.++.+.+.+.
T Consensus 152 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 152 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 9975321 122223334557789999999999999887665543
No 172
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.13 E-value=9e-07 Score=76.24 Aligned_cols=56 Identities=21% Similarity=0.149 Sum_probs=31.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-C--CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G--KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~--~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.. ......+|+.+... +.+ + -.+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC--CC----------CBCCCC-------CEEECCCC-C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCCh
Confidence 35789999999999999999999754 23333444433211 111 2 235699999974
No 173
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.13 E-value=4e-06 Score=70.51 Aligned_cols=107 Identities=15% Similarity=0.054 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~ 164 (383)
+..+.+||..-.... ........+.....+..+|++++|+|+..+.......+..++. +.|+++|+||+|+.+..+
T Consensus 48 ~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 125 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSG--DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL 125 (161)
T ss_dssp TEEEEEEECGGGCSS--SSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG
T ss_pred CceEEEEECCCCCCc--cchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH
Confidence 346778885322110 0001223455557789999999999998876655555555543 789999999999976531
Q ss_pred HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762 165 RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 165 ~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
. ...+.+.+. .++.+|+++|.|+.++.+.+.
T Consensus 126 --~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 157 (161)
T 2dyk_A 126 --Y-LGPLYGLGFGDPIPTSSEHARGLEELLEAIW 157 (161)
T ss_dssp --G-CGGGGGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred --h-HHHHHhCCCCCeEEEecccCCChHHHHHHHH
Confidence 1 111224565 689999999999988866543
No 174
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.13 E-value=2.9e-07 Score=94.29 Aligned_cols=56 Identities=30% Similarity=0.522 Sum_probs=44.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~ 272 (383)
++++|+++|.+|+|||||+|+|++.. ......+|+|.+.....+ +..+.++||||.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh 62 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH 62 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCCh
Confidence 45689999999999999999999765 445577899998643332 346899999996
No 175
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.12 E-value=3.1e-06 Score=73.53 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=36.7
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+... .....|.+.... ..+.++. .+.++||||.-
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence 357899999999999999999997542 221122221111 1223322 47899999964
No 176
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.12 E-value=3.6e-06 Score=70.92 Aligned_cols=104 Identities=9% Similarity=-0.054 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL 159 (383)
...+.+||. ||+ ..........+..+|.++.|+|+.++.+.... ++..... +.|+++|+||+|+
T Consensus 51 ~~~~~l~D~--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 51 EVQIDILDT--------AGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp EEEEEEEEC--------CC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred EEEEEEEEC--------CCc-chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence 356778884 332 33344555678999999999999865432221 1222222 6899999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+..+ ...........+..++.+|+++|.|+.++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 65321 22333444556788999999999999988665543
No 177
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.12 E-value=9.3e-06 Score=82.25 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADR 165 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~ 165 (383)
..+.+|| .||| ..+.+.+...+..+|++++|+|+..+......+...++ .+.|.++|+||+|+.+.+..
T Consensus 73 ~~i~iiD--------tPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~ 143 (482)
T 1wb1_A 73 YRITLVD--------APGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEI 143 (482)
T ss_dssp EEEEECC--------CSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHH
T ss_pred EEEEEEE--------CCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhH
Confidence 4566666 3787 56677777889999999999999875433222211122 36788999999999986433
Q ss_pred H----HHHHHHHHc----CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 166 N----AWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 166 ~----~w~~~l~~~----g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
. ...+++... +..++++|+++|.|+.+|.+.+.+..
T Consensus 144 ~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 144 KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 2 233344444 36789999999999999887776644
No 178
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.12 E-value=2.7e-06 Score=73.04 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h-cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l-~~k~~ilVlNK~DL~ 160 (383)
...+.+||.. |+ ..........+..+|++++|+|+..+.+..+. .+..+ . .+.|+++|+||+|+.
T Consensus 59 ~~~~~~~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 59 KVKLQMWDTA--------GQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEEECC--------CC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred EEEEEEEeCC--------Cc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 3567788843 22 33344445668999999999999875433221 11111 1 367899999999998
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+... .....+.....+..++++|+++|.|+.++.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5321 12222334455778999999999999988666544
No 179
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.12 E-value=1.5e-06 Score=73.92 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||..-. ..........+..+|++++|+|+.++.+... ..+..++ .+.|+++|+||+|+
T Consensus 50 ~~~~~~~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 50 NLKFQVWDLGGL---------TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp TEEEEEEEECCC---------GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEECCCC---------hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence 566788884322 2222333456789999999999987754322 2233333 36799999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+......+.+.+. ..+..++++|+++|.|+.++.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 121 EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET 166 (171)
T ss_dssp TTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHH
Confidence 87533333433332 224468899999999999887665443
No 180
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.11 E-value=2.4e-06 Score=74.07 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||. ||+ ..........+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+
T Consensus 61 ~~~~~~~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 61 GFKLNIWDV--------GGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp TEEEEEEEE--------CCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEEC--------CCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 466778884 332 3344444567899999999999987654322 1233332 25799999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+........+.+. ..+..++.+|+++|.|+.++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (186)
T 1ksh_A 132 PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177 (186)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHH
Confidence 86543333333332 224568889999999999887665443
No 181
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.11 E-value=2.8e-06 Score=73.93 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=34.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccCC-CCCceeEEEEEEe--------CCcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF--------GKDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pgtT~~~~~~~~--------~~~i~l~DTpG~i 273 (383)
++|+++|.+|||||||+|+|.+......+. .|.++.+.....+ ...+.++||+|.-
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 579999999999999999999753222222 2333344332221 2357899999974
No 182
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.11 E-value=6.1e-06 Score=78.50 Aligned_cols=112 Identities=15% Similarity=0.050 Sum_probs=74.5
Q ss_pred cCCCcEEEEcCCCCCcCCCchH--HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGH--IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNRED 158 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh--~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~D 158 (383)
..+..+++||..... .|.+ .+.+.+.....+..+|++++|+|+..+.+..+..+...+. +.|+++|+||+|
T Consensus 52 ~~~~~l~l~DTpG~~---~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~D 128 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLH---KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 128 (301)
T ss_dssp ETTEEEEEEECCCCC---CCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGG
T ss_pred eCCcEEEEecCcccc---chhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcc
Confidence 346778899954322 2211 1224455567789999999999998876655444433332 689999999999
Q ss_pred CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+.+... ...+.+.+ .....++++|+++|.|+.+|.+.+.+.
T Consensus 129 l~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 129 AAKYPEEAMKAYHEL-LPEAEPRMLSALDERQVAELKADLLAL 170 (301)
T ss_dssp GCSSHHHHHHHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred cCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 986554 33333333 112468899999999998887766543
No 183
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=2.5e-06 Score=74.54 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=39.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+.. .......|+.+.. .+.++. .+.++||||.-
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCc
Confidence 34789999999999999999999764 2334444444322 233332 46789999974
No 184
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.10 E-value=6.2e-06 Score=71.99 Aligned_cols=57 Identities=28% Similarity=0.303 Sum_probs=36.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... .....|........+.++. .+.++||||.-
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCCTTCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCCcceEEEEEEECCEEEEEEEEECCCCh
Confidence 457999999999999999999987542 2112221111112333432 35679999973
No 185
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.10 E-value=3.1e-06 Score=74.48 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=36.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCC-CCCceeEEEEEEe----CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF----GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pgtT~~~~~~~~----~~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|.|.++....... ...+++.... .+ ...+.++||||--
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~Dt~G~~ 80 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKD-DISNSSFVNFQIWDFPGQM 80 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEE-EECCTTSCCEEEEECCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeee-eccCCCeeEEEEEECCCCH
Confidence 45789999999999999999998753222111 1122222222 22 2468999999974
No 186
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.10 E-value=3.6e-06 Score=75.45 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=36.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-E-EEEeC---CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-K-WVRFG---KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~-~~~~~---~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... ......|+.+. . .+.++ -.+.++||||.-
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 457899999999999999999997642 22222222222 1 12222 247899999964
No 187
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.09 E-value=3e-06 Score=73.68 Aligned_cols=105 Identities=10% Similarity=0.115 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||.. |+ .+........+..+|++++|+|+.++.+.... .+..+. .+.|+++|+||+|+
T Consensus 59 ~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 59 NTRFLMWDIG--------GQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp TEEEEEEECC--------C-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEECC--------CC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 4677888843 32 23333445678999999999999876543221 233332 36799999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
..........+.+. ..+..++.+|+++|.|+.++.+.+.+.
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (187)
T 1zj6_A 130 KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 175 (187)
T ss_dssp TTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHH
Confidence 76322233333332 234578899999999999887665543
No 188
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.07 E-value=7.4e-06 Score=81.13 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-C---cHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-T---HPLMDQWLGNRKRILVLNREDMISMA 163 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-~---~~~l~~~l~~k~~ilVlNK~DL~~~~ 163 (383)
..+.+||. ||| ..+.+.+...+..+|++++|+|+..+... . ...+...+..+++++|+||+|+.+.+
T Consensus 83 ~~i~iiDt--------PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 83 RRVSFIDA--------PGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEEEEEEC--------SSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred cEEEEEEC--------CCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence 34667773 787 55666666778889999999999876411 1 11122223456899999999999865
Q ss_pred HH----HHHHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 164 DR----NAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 164 ~~----~~w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.. +.+.+++.. .+..++++|+++|.|+.+|.+.+.+.
T Consensus 154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 32 233334432 24678999999999999887777653
No 189
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.07 E-value=9.7e-06 Score=69.74 Aligned_cols=105 Identities=8% Similarity=-0.093 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL 159 (383)
...+.+||..-. ..........+..+|.+++|+|+.++.+.... ++..... +.|+++|+||+|+
T Consensus 65 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 65 EVQIDILDTAGQ---------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp EEEEEEEECCCT---------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred EEEEEEEECCCC---------cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 356788885332 12233445678899999999999865432221 1222222 6899999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+... .....++....+..++++|+++|.|+.++.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 65321 233444455667889999999999999886665443
No 190
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.07 E-value=3.2e-06 Score=75.11 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=38.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|.+... ......|+.+.. .+.++. .+.++||||.-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999997542 233334443322 223332 57899999984
No 191
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.06 E-value=8.7e-06 Score=82.44 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHH-HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAK-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD 164 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~-~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~ 164 (383)
.+..+.+||..-.... +....+. ..+...+.++++|++|+|+|+..+.+..+.++.+.+.++|+++|+||+||.+...
T Consensus 289 ~g~~~~l~DTaG~~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~ 367 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSE-TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKIN 367 (482)
T ss_dssp TTEEEEEEESSCCCSS-CCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCC
T ss_pred CCeEEEEEECCCcccc-chhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccC
Confidence 3567888886432201 1100000 1133456789999999999998876655555555566899999999999975322
Q ss_pred HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 165 RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 165 ~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.....+++ ..+..++++|+++|.|+++|.+.+.+
T Consensus 368 ~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 368 EEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp HHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 22222222 23357899999999999998776654
No 192
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.06 E-value=4.7e-06 Score=74.25 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=37.3
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE-EEEeCC---cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~-~~~~~~---~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++... .....|.+..+.. .+.++. .+.++||||.-
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 357899999999999999999997642 2222232222221 223332 47899999964
No 193
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.05 E-value=5.5e-06 Score=78.61 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=40.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC-Cc--EEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG-KD--LEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~-~~--i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|++++.. ..+...+||.+... +.++ .. +.++||||.-
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCch
Confidence 45789999999999999999999654 34555667766433 2332 33 4599999974
No 194
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.05 E-value=6.8e-06 Score=84.21 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=46.8
Q ss_pred CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEE------EEE
Q 016762 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLK------WVR 259 (383)
Q Consensus 187 g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~------~~~ 259 (383)
..|+..+.+.++++.+..... ........++|++||.||||||||+|+|++.... ...++.|.+-... .+.
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g--~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~ 90 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKG--EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE 90 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTT--CCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGT
T ss_pred HhCHHHHHHHHHHHHHhhccC--cccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecccccccee
Confidence 456777777777765422110 1101234589999999999999999999976421 1112222222211 011
Q ss_pred e-----CCcEEEEecCcc
Q 016762 260 F-----GKDLEFLDSPGI 272 (383)
Q Consensus 260 ~-----~~~i~l~DTpG~ 272 (383)
+ +..+.++||||.
T Consensus 91 ~~~~~~~~~~~i~Dt~G~ 108 (535)
T 3dpu_A 91 NDDELKECLFHFWDFGGQ 108 (535)
T ss_dssp TCSTTTTCEEEEECCCSC
T ss_pred ecCCCceEEEEEEECCcH
Confidence 1 245899999994
No 195
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.05 E-value=5e-06 Score=72.29 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=37.2
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCC-------CCCceeEEEEEE-----eC---CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVR-----FG---KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-------~pgtT~~~~~~~-----~~---~~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|.|.+........ ....|....... ++ ..+.++||||.-
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 35789999999999999999998754322111 122344333221 11 147899999964
No 196
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.05 E-value=2.5e-06 Score=73.53 Aligned_cols=84 Identities=11% Similarity=-0.096 Sum_probs=54.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcC
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~ 186 (383)
..+..+|.++.|+|..++.+.... ++.... .+.|+++|+||+|+..... .....+.....+..++.+|+++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (181)
T 3t5g_A 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKE 152 (181)
T ss_dssp GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTS
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCC
Confidence 457789999999999765433221 111221 2679999999999964321 1222233445677899999999
Q ss_pred CCchhhhhHHHHH
Q 016762 187 GMGTMKLSRLAKA 199 (383)
Q Consensus 187 g~Gi~~L~~~l~~ 199 (383)
|.|+.++.+.+.+
T Consensus 153 ~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 153 NQTAVDVFRRIIL 165 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9998887655543
No 197
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.05 E-value=4.2e-06 Score=71.54 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l-~~k~~ilVlNK~DL 159 (383)
....+.+||.. |+ ..........+..+|++++|+|+..+.+..+.. +.... .+.|+++|+||+|+
T Consensus 62 ~~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 132 (179)
T 1z0f_A 62 QKIKLQIWDTA--------GQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132 (179)
T ss_dssp EEEEEEEEECT--------TG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred eEEEEEEEECC--------CC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 34567888843 32 233444557789999999999998754332211 11111 26789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.+... .....++....+..++++|+++|.|+.++.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 133 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 64321 2233344556678899999999999988865543
No 198
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.04 E-value=8.2e-06 Score=71.91 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=37.7
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCC--ceeEEEEEEeCC---cEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg--tT~~~~~~~~~~---~i~l~DTpG~i~ 274 (383)
.++|+++|.+|||||||+|+|++... .....|. ++.....+.++. .+.++||||.-.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 46899999999999999999998642 2222233 333333444443 356799999753
No 199
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.04 E-value=2.9e-06 Score=81.64 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=36.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCcc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGI 272 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~ 272 (383)
..++|+|+|.+|||||||+|+|++... +...| |.+.... .. +..+.++||||-
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~--~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQ 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC--EEEEE--ETTEEEEEEEETTEEEEEEECC--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC--CCccc--ccceEEEEEecCcEEEEEEECCCC
Confidence 356899999999999999999997653 22333 4443332 22 346889999994
No 200
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.01 E-value=5.2e-06 Score=71.32 Aligned_cols=105 Identities=11% Similarity=0.062 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||..- | ..........+..+|++++|+|+.++.+.... .+..+. .+.|+++|+||+|+.
T Consensus 60 ~~~~~i~Dt~G--------~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 60 TVKFEIWDTAG--------Q-ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEECCC--------S-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCC--------C-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 45678888432 2 22333445678999999999998765432211 111221 157899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+... .....++....+..++++|+++|.|+.++.+.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (181)
T 2efe_B 131 DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR 172 (181)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5332 233334445567889999999999999887665443
No 201
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.01 E-value=2.9e-06 Score=73.55 Aligned_cols=102 Identities=10% Similarity=0.091 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||..-. .+........+..+|++++|+|+.++.+..+. .+..++ .+.|+++|+||+||
T Consensus 64 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 64 NTRFLMWDIGGQ---------ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp TEEEEEEEESSS---------GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEECCCC---------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 467888884332 22223334568999999999999876443321 233333 36789999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
........+.+.+. ..+..++.+|+++|.|+.++.+.+
T Consensus 135 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 135 KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred ccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 76322233323221 123468899999999998876654
No 202
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.01 E-value=1.1e-05 Score=70.76 Aligned_cols=57 Identities=16% Similarity=0.332 Sum_probs=38.6
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC-c--EEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK-D--LEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~-~--i~l~DTpG~i~ 274 (383)
.++|+++|.+|||||||+|+|++... .....|.++.+ ...+.++. . +.+.||+|.-.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 47899999999999999999997642 22333433333 33444443 3 45699999753
No 203
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.00 E-value=3.7e-05 Score=69.29 Aligned_cols=112 Identities=11% Similarity=-0.046 Sum_probs=66.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHH-HH-HHHHHHHhhhcCeEEEEEecCCCCCCCcH---HH-HHHhc---CCCeEEEEEcc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIA-KT-EKELKDQLKLMDVVIEVRDARIPLSTTHP---LM-DQWLG---NRKRILVLNRE 157 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~-~~-~~~l~~~idr~DlILeV~DaR~p~~~~~~---~l-~~~l~---~k~~ilVlNK~ 157 (383)
+..+.+||...... ++...+ .. ...+......+|++++|+|+..+.+.... .+ ..+.. +.|+++|+||+
T Consensus 75 ~~~~~l~DtpG~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~ 152 (228)
T 2qu8_A 75 LNKYQIIDTPGLLD--RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKI 152 (228)
T ss_dssp TEEEEEEECTTTTT--SCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECG
T ss_pred CCeEEEEECCCCcC--cccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCc
Confidence 45688898643310 000001 00 12233456788999999999887654322 12 22222 68999999999
Q ss_pred CCCCHHHH-----HHHHHHHHHcC--CeEEEeeCcCCCchhhhhHHHHHh
Q 016762 158 DMISMADR-----NAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 158 DL~~~~~~-----~~w~~~l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
|+.+.... ..........+ ..++++|+++|.|+.++.+.+.+.
T Consensus 153 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 153 DKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp GGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHH
Confidence 99865321 12222333444 678899999999999887665543
No 204
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.00 E-value=1.2e-05 Score=69.81 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||..- | ..........+..+|++++|+|+.++.+... ..+..++ .+.|+++|+||+|+
T Consensus 59 ~~~l~i~Dt~G---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 59 GFKLNVWDIGG---Q------RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp TEEEEEEECSS---C------GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred CEEEEEEECCC---C------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 56778888532 2 2233444567899999999999986543322 1233332 25799999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+........+.+. ..+..++.+|+++|.|+.++.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (181)
T 1fzq_A 130 LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174 (181)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHH
Confidence 76433333333221 12346788999999999888666543
No 205
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.00 E-value=2e-06 Score=87.20 Aligned_cols=56 Identities=23% Similarity=0.453 Sum_probs=34.6
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCc------cccCCCCCceeEEEE--EEe-CCcEEEEecCcc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRM------CPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGI 272 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~------~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~ 272 (383)
.++|+++|.+|+|||||+|+|++... ...+..+|+|.+... +.. +..+.++||||.
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 57899999999999999999997651 334567889988643 233 347899999997
No 206
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.99 E-value=3.6e-06 Score=71.94 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||..- + ..........+..+|++++|+|+.++.+.... .+..+. .+.|+++|+||+|+.
T Consensus 62 ~~~~~~~Dt~G---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 62 TVRLQLWDTAG---Q------ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEEECC---S------GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred EEEEEEEECCC---c------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 35677888432 2 22233444678899999999999765432221 122211 267899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+... ...........+..++.+|+++|.|+.++.+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 173 (179)
T 2y8e_A 133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 173 (179)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5432 22333444556788999999999999888766544
No 207
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.99 E-value=4.4e-06 Score=74.19 Aligned_cols=107 Identities=11% Similarity=0.017 Sum_probs=66.1
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNRED 158 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l----~~~l~~k~~ilVlNK~D 158 (383)
.....+.+||...... | .......+..+|++++|+|..++.+..+. .+ .....+.|+++|+||+|
T Consensus 54 ~~~~~~~i~Dt~G~~~--~-------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 124 (212)
T 2j0v_A 54 GQIVNLGLWDTAGQED--Y-------SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124 (212)
T ss_dssp SCEEEEEEECCCCCCC--C-------CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred CEEEEEEEEECCCcHH--H-------HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHH
Confidence 3445778888543321 1 11222467899999999998765433221 11 11122789999999999
Q ss_pred CCCHHH----------HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHh
Q 016762 159 MISMAD----------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 159 L~~~~~----------~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+..... .....+.....+. .++++|+++|.|+.++.+.+.+.
T Consensus 125 l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 125 LRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp HHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHH
Confidence 965432 1222223344564 78999999999999886655443
No 208
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.99 E-value=1.1e-06 Score=89.18 Aligned_cols=57 Identities=26% Similarity=0.406 Sum_probs=44.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
++++|+++|.+|+|||||+|+|++.. +..+..+|+|.+.....+ +..+.++||||.-
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe 62 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHA 62 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcH
Confidence 45679999999999999999998643 445666888887644333 4578999999974
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.99 E-value=4.2e-06 Score=80.89 Aligned_cols=24 Identities=54% Similarity=0.833 Sum_probs=21.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~ 239 (383)
....++|+|.||||||||+|.|.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999973
No 210
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.98 E-value=1.1e-06 Score=88.49 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=40.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC-cc-----------------------------ccCCCCCceeEEEEEEe---CC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MC-----------------------------PAAPRPGVTRVLKWVRF---GK 262 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~-----------------------------~v~~~pgtT~~~~~~~~---~~ 262 (383)
..++|+++|.+|+|||||+|+|++.. .. ..+...|+|.+.....+ +.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 35789999999999999999998541 00 00113678877543333 34
Q ss_pred cEEEEecCccc
Q 016762 263 DLEFLDSPGII 273 (383)
Q Consensus 263 ~i~l~DTpG~i 273 (383)
.+.++||||.-
T Consensus 86 ~~~iiDtPGh~ 96 (458)
T 1f60_A 86 QVTVIDAPGHR 96 (458)
T ss_dssp EEEEEECCCCT
T ss_pred eEEEEECCCcH
Confidence 68999999953
No 211
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.98 E-value=1.3e-05 Score=69.15 Aligned_cols=106 Identities=12% Similarity=-0.065 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h--cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L--GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l--~~k~~ilVlNK~D 158 (383)
....+.+||... + ..........+..+|.++.|+|+.++.+.... .+..+ . .+.|+++|+||+|
T Consensus 50 ~~~~~~i~Dt~G---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 50 ETCLLDILDTAG---Q------EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp EEEEEEEEECCC---C---------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred cEEEEEEEECCC---c------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 334566788432 2 23333444678889999999999865332221 11111 1 2679999999999
Q ss_pred CCCHHHHH-HHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 159 MISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 159 L~~~~~~~-~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+.+..... .........+..++++|+++|.|+.++.+.+.+.
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163 (189)
T ss_dssp SSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 97543211 1222234457789999999999999886655443
No 212
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.98 E-value=4.5e-06 Score=82.66 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=63.1
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC----cHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT----HPLMDQWLGNRKRILVLNREDMISMA 163 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~----~~~l~~~l~~k~~ilVlNK~DL~~~~ 163 (383)
..+.+||. ||| ..+.+.+...+..+|++++|+|+..+.... ...+...+..+|+++++||+|+.+.+
T Consensus 81 ~~i~iiDt--------PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 81 RRVSFVDS--------PGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEEEEEEC--------SSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred cEEEEEEC--------CCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 34667773 777 455666656677889999999998764111 11122223356899999999998653
Q ss_pred H----HHHHHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 164 D----RNAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 164 ~----~~~w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
. .+...+++.+ .+..++++|+++|.|+.+|.+.+.+
T Consensus 152 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 194 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQD 194 (408)
T ss_dssp TTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 2 2333344433 2467899999999999988777765
No 213
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.97 E-value=4.8e-06 Score=81.23 Aligned_cols=58 Identities=29% Similarity=0.377 Sum_probs=30.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCC------CceeEEE--EEEe--C---CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVLK--WVRF--G---KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p------gtT~~~~--~~~~--~---~~i~l~DTpG~i 273 (383)
..++|++||.+|+|||||+|+|.+......+..+ ..|.... ...+ + ..+.++||||+-
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 4578999999999999999999876543322221 2233322 2222 1 147899999994
No 214
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.97 E-value=3.3e-06 Score=82.73 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=37.9
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
+|+++|.+|+|||||+|+|+ ..|+|.+.....+ +..+.++||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 69999999999999999998 3467777655444 45689999999853
No 215
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.97 E-value=4.6e-06 Score=82.64 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=30.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc--cccCCCCCceeEEE
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK 256 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pgtT~~~~ 256 (383)
..++|+++|.+|+|||||+|+|++... ......+|+|.+..
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 51 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG 51 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEe
Confidence 457899999999999999999996532 22333578887653
No 216
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.97 E-value=5e-06 Score=83.07 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.6
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
..++|+++|.+|+|||||+|+|++..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 34789999999999999999998653
No 217
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.22 E-value=9.7e-07 Score=78.09 Aligned_cols=56 Identities=23% Similarity=0.211 Sum_probs=37.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CC--cEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK--DLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~--~i~l~DTpG~i 273 (383)
..++|+++|.+|||||||+|+|++.. .......+|.+... +.. +. .+.++||||.-
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89 (204)
Confidence 35789999999999999999998643 23333444444322 122 22 35599999974
No 218
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.97 E-value=8.5e-06 Score=71.37 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-~~k~~ilVlNK~DL~ 160 (383)
...+.+||..- + .+........+..+|++++|+|+.++.+..+. .+.... .+.|+++|+||+|+.
T Consensus 74 ~~~l~l~Dt~G---~------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAG---Q------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECC---S------GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCC---c------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 45678888432 2 23344455778999999999999875443321 111111 267899999999997
Q ss_pred CHHH--HHHHHHHHHH-cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~-~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+..+ .....++... .+..++.+|+++|.|+.++.+.+.+
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5322 1122222223 2577889999999999988665543
No 219
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.97 E-value=2.8e-05 Score=68.17 Aligned_cols=104 Identities=8% Similarity=-0.085 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL 159 (383)
...+.+||.... ..........+..+|.++.|+|+.++.+.... ++..... +.|+++|+||+|+
T Consensus 61 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 61 EVQIDILDTAGQ---------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp EEEEEEEECCCT---------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred EEEEEEEcCCCh---------hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 356788885332 12233444678899999999999865432221 1222222 6899999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+... ......+....+..++++|+++|.|+.++.+.+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 173 (206)
T 2bov_A 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173 (206)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 75321 22333444556788999999999999988665544
No 220
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.96 E-value=1.1e-05 Score=81.74 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=63.5
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHH------HHhcCCCeEEEEE
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMD------QWLGNRKRILVLN 155 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~----~~~~l~------~~l~~k~~ilVlN 155 (383)
.+..+.+||. ||| +.+.+.+...+..+|++|+|+|+..+... ...+.. ..+..+++++|+|
T Consensus 109 ~~~~~~iiDT--------PG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviN 179 (483)
T 3p26_A 109 HRANFTIVDA--------PGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 179 (483)
T ss_dssp SSCEEEEECC--------CCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCceEEEEEC--------CCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEE
Confidence 4556778874 555 55677777889999999999999876432 112211 1223467999999
Q ss_pred ccCCCC--HHHHH----HHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762 156 REDMIS--MADRN----AWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 156 K~DL~~--~~~~~----~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L 193 (383)
|+|+.+ ..... ...+++...| ..++++|+++|.|+.++
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 999986 22222 2223333333 36789999999999753
No 221
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=6e-06 Score=72.28 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL 159 (383)
....+.+||..- + ..........+..+|++++|+|+.++.+..... +..+. .+.|+++|+||+|+
T Consensus 70 ~~~~~~i~Dt~G---~------~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl 140 (192)
T 2fg5_A 70 ELHKFLIWDTAG---Q------ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140 (192)
T ss_dssp SEEEEEEEEECC---S------GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEEEEcCCC---c------hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 445678888432 2 223334456789999999999998754322211 11111 26789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+... .....++..+.+..++++|++.|.|+.++.+.+.+.
T Consensus 141 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 141 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ 183 (192)
T ss_dssp GGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 74221 233334455567889999999999999887766543
No 222
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.96 E-value=1.3e-05 Score=70.88 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||..- | .+........+..+|++++|+|+.++.+..+. .+..+. .+.|+++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G---~------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 77 RVKLQIWDTAG---Q------ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEEECCTT---C------GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCC---c------HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 45788888432 2 23344455778999999999998765432221 122221 357899999999997
Q ss_pred CHHH--HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.... .....+.....+. .++.+|+++|.|+.++.+.+.+
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 189 (201)
T 2hup_A 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189 (201)
T ss_dssp GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5321 1222233445677 8899999999999988665543
No 223
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.96 E-value=1.3e-05 Score=69.72 Aligned_cols=106 Identities=10% Similarity=-0.036 Sum_probs=63.5
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~D 158 (383)
...++.+||. ||+ ..........+..+|+++.|+|+.++.+..+. ++..... +.|+++|+||+|
T Consensus 67 ~~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 137 (190)
T 3con_A 67 ETCLLDILDT--------AGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137 (190)
T ss_dssp EEEEEEEEEC--------CC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEEEC--------CCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCc
Confidence 3456888884 332 33344445678999999999998765432221 1222222 689999999999
Q ss_pred CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+.+... .....+.....+..++.+|+++|.|+.++.+.+.+.
T Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 138 LPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp CSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 975221 122223334557789999999999998886665443
No 224
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.96 E-value=4.7e-06 Score=82.26 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=41.7
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCc----cc-----------cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRM----CP-----------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~----~~-----------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
.++|+++|.+|+|||||+|+|++... .. .+...|+|.+.....+ +..+.++||||..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 46899999999999999999986310 00 1124678888655444 3578999999984
No 225
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.95 E-value=4.8e-06 Score=70.37 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---hcCCCeEEEEEccCCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---LGNRKRILVLNREDMI 160 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l~~k~~ilVlNK~DL~ 160 (383)
....+.+||.. |+ ..........+..+|+++.|+|+..+.+.... .+..+ ..+.|+++|+||+|+.
T Consensus 52 ~~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 52 EDVRLMLWDTA--------GQ-EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEEEECCT--------TG-GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EEEEEEEEcCC--------Cc-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 34567888843 22 22223344678899999999999765432221 11222 2378999999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+... .....+...+.+..++.+|+++|.|+.++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 5321 22233344556788999999999999988666543
No 226
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.95 E-value=1.1e-05 Score=81.51 Aligned_cols=83 Identities=20% Similarity=0.100 Sum_probs=60.5
Q ss_pred HHhhhcCeEEEEEecCCCCCC----CcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHc-CCeEEEeeCcCCCch
Q 016762 116 DQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGT 190 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~----~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-g~~vi~iSa~~g~Gi 190 (383)
..+..+|++|+|+|+..+.+. ...++...+.++|+++|+||+|+.+...... +.+.+. ...++++|+++|.|+
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTTTBSH
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECCCCCH
Confidence 457899999999999987765 2333444445789999999999987654332 223332 357899999999999
Q ss_pred hhhhHHHHHh
Q 016762 191 MKLSRLAKAL 200 (383)
Q Consensus 191 ~~L~~~l~~l 200 (383)
.+|.+.+.+.
T Consensus 386 ~eL~~~i~~~ 395 (476)
T 3gee_A 386 DTLKQHMGDL 395 (476)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 9887766543
No 227
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.95 E-value=2.3e-05 Score=78.44 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------CcHH-HHHH-hcCCC-eEEEEEc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPL-MDQW-LGNRK-RILVLNR 156 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-------~~~~-l~~~-l~~k~-~ilVlNK 156 (383)
+..+.+||. ||| +.+.+.+...+..+|++|+|+|++.+... ...+ +..+ ..+.| +++|+||
T Consensus 94 ~~~~~iiDT--------PGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK 164 (439)
T 3j2k_7 94 KKHFTILDA--------PGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK 164 (439)
T ss_pred CeEEEEEEC--------CCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeec
Confidence 345667773 676 66777777889999999999999986531 1111 1111 12455 8999999
Q ss_pred cCCCCH----HH----HHHHHHHHHHcC------CeEEEeeCcCCCchhhhhH
Q 016762 157 EDMISM----AD----RNAWATYFAKQG------TKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 157 ~DL~~~----~~----~~~w~~~l~~~g------~~vi~iSa~~g~Gi~~L~~ 195 (383)
+|+... .. .....+++.+.| ..++++|+++|.|+.++.+
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999642 11 122223343444 3588999999999988543
No 228
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.95 E-value=3.9e-06 Score=73.73 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D 158 (383)
.+..+.+||. ||+ ..........++.+|++++|+|+.++.+... ..+..++. +.|+++|+||+|
T Consensus 71 ~~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 141 (192)
T 2b6h_A 71 KNICFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141 (192)
T ss_dssp TTEEEEEEEC--------C------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CCEEEEEEEC--------CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence 4567788884 333 2333444567899999999999987643222 12333332 679999999999
Q ss_pred CCCHHHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+....+.+.+.+.. .+..++.+|+++|.|+.++.+.+.+
T Consensus 142 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 187 (192)
T 2b6h_A 142 MPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH 187 (192)
T ss_dssp STTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence 9765333344333321 2345788999999999888665543
No 229
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.94 E-value=5.1e-06 Score=70.25 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~ 160 (383)
+..+.+||..- + ..........+..+|++++|+|+..+.+.... .+..+. .+.|+++|.||+|+.
T Consensus 54 ~~~~~~~D~~G---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 54 TVKFEIWDTAG---Q------ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEEECC---S------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCC---c------HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 45677888432 2 22333445678999999999999765432221 112221 256788999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+... .....+.....+..++.+|+++|.|+.++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5321 12233344456778899999999999988766543
No 230
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.94 E-value=1.3e-05 Score=80.06 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHHhcCCCeEEEEEccCCCC--
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMIS-- 161 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~---l~~~l~~k~~ilVlNK~DL~~-- 161 (383)
+..+.+||. ||| ..+.+.+...+..+|++|+|+|++.+......+ +...+..+++++|+||+|+.+
T Consensus 103 ~~~~~iiDt--------pGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 103 KRKFIIADT--------PGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SEEEEEEEC--------CCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred CceEEEEEC--------CCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 345667773 555 445566667789999999999999765332222 112222346899999999986
Q ss_pred HHH----HHHHHHHHHHcC-----CeEEEeeCcCCCchhh
Q 016762 162 MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (383)
Q Consensus 162 ~~~----~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~ 192 (383)
.+. ...+.+++...| ..++++|+++|.|+.+
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 222 233444455555 4678899999999886
No 231
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.93 E-value=1.7e-05 Score=66.64 Aligned_cols=104 Identities=13% Similarity=-0.081 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~---l~~~l--~~k~~ilVlNK~DL 159 (383)
...+.+||..-. ..........+..+|.++.|+|+.++.+..+. . +.... .+.|+++|+||+|+
T Consensus 50 ~~~~~l~D~~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 50 PSVLEILDTAGT---------EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp EEEEEEEECCCT---------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred EEEEEEEECCCc---------hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 345778885332 12233344568899999999999865432221 1 22222 26899999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+..+ .........+.+..++++|+++|.|+.++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHH
Confidence 65322 12222333445778999999999999888666543
No 232
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.93 E-value=4.2e-06 Score=80.93 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=26.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhc------CCccccCCCCCcee
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLK------RRMCPAAPRPGVTR 253 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~------~~~~~v~~~pgtT~ 253 (383)
....|+++|+||+|||||+|.|++ .+...++.-|++|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 456799999999999999999963 33334444455443
No 233
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.93 E-value=1.9e-05 Score=66.55 Aligned_cols=105 Identities=10% Similarity=-0.102 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~---l~~~l--~~k~~ilVlNK~D 158 (383)
.+..+.+||..-.. .........+..+|.++.|+|+.++.+.... . +.... .+.|+++|+||+|
T Consensus 49 ~~~~~~l~D~~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1c1y_A 49 QQCMLEILDTAGTE---------QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119 (167)
T ss_dssp CEEEEEEEEECSSC---------SSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTT
T ss_pred EEEEEEEEECCChH---------HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcc
Confidence 34567788843321 1122334567889999999999865432221 1 22221 2689999999999
Q ss_pred CCCHHH--HHHHHHHHHHc-CCeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMAD--RNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~--~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+... ......+.... +..++++|+++|.|+.++.+.+.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp CGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHH
Confidence 965321 12222233343 578899999999999988766543
No 234
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.92 E-value=3.1e-06 Score=83.70 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=42.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC---Cc--cc-----c------CCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR---RM--CP-----A------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~---~~--~~-----v------~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
..++|+++|.+|+|||||+|+|++. .. .. . +...|+|.+.....+ +..+.++||||...
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 3578999999999999999999863 10 00 0 114577877654443 35789999999863
No 235
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.91 E-value=3.1e-05 Score=65.48 Aligned_cols=105 Identities=11% Similarity=-0.030 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HH---HHHHh---cCCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL---GNRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~---l~~~l---~~k~~ilVlNK~D 158 (383)
...+.+||..... .........+..+|.++.|+|+.++.+..+ .. +.... .+.|+++|+||+|
T Consensus 50 ~~~~~~~Dt~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~D 120 (172)
T 2erx_A 50 ICTLQITDTTGSH---------QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120 (172)
T ss_dssp EEEEEEEECCSCS---------SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGG
T ss_pred EEEEEEEECCCch---------hhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccc
Confidence 3567888854321 122333456788999999999986543221 11 22221 2689999999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 159 L~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+.+..+. ..........+..++++|+++|.|+.++.+.+.+.
T Consensus 121 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (172)
T 2erx_A 121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNL 164 (172)
T ss_dssp GGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred cccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHH
Confidence 9754321 11122233456788999999999999887766554
No 236
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.90 E-value=2.5e-05 Score=66.12 Aligned_cols=106 Identities=16% Similarity=0.031 Sum_probs=64.1
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc-----CCCeEEEEEc
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG-----NRKRILVLNR 156 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~idr~DlILeV~DaR~p~~~~~~--~l~~~l~-----~k~~ilVlNK 156 (383)
.....+.+||..-. ......+. ..+..+|+++.|+|..++.+.... .+..+.. +.|+++|+||
T Consensus 48 ~~~~~~~i~D~~g~---------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 48 KEEVTLIVYDIWEQ---------GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp TEEEEEEEECCCCC-----------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred CeEEEEEEEECCCc---------cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 34456778884322 22223233 457889999999999765433221 2222221 6899999999
Q ss_pred cCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 157 ~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+|+.+... .....++....+..++++|+++|.|+.++.+.+.+
T Consensus 119 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred cchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHH
Confidence 99974321 12222334456788999999999999888655443
No 237
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.90 E-value=6.3e-06 Score=72.93 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=65.6
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---c-CCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---G-NRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l---~-~k~~ilVlNK~DL~~ 161 (383)
..+.+||.. |+ ..........+..+|++++|+|+..+.+.... .+..+. . +.|+++|+||+|+..
T Consensus 69 ~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 69 VKLQLWDTA--------GQ-ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp EEEEEECCT--------TG-GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred EEEEEEeCC--------Cc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 567888843 32 22233345678999999999998765432211 111111 1 578999999999953
Q ss_pred HHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 162 MAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 162 ~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
... ......+....+..++++|++.|.|+.++.+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 179 (213)
T 3cph_A 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 179 (213)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 321 111222334457789999999999999987666543
No 238
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.90 E-value=2.3e-05 Score=68.30 Aligned_cols=106 Identities=14% Similarity=0.022 Sum_probs=69.0
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HH-HHHh----cCCCeEEEEEccC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL----GNRKRILVLNRED 158 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~l-~~~l----~~k~~ilVlNK~D 158 (383)
.....+.+||. ||+ ..........+..+|++++|+|+.++.+.... .+ ..+. .+.|+++|+||+|
T Consensus 69 ~~~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 139 (191)
T 3dz8_A 69 EKRVKLQIWDT--------AGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139 (191)
T ss_dssp TTTEEEEEECH--------HHH-HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred CEEEEEEEEeC--------CCh-HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 34556777773 554 55556666789999999999998764332211 11 1111 2678999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+..... ...........+..++.+|+++|.|+.++.+.+.+
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182 (191)
T ss_dssp CGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 964321 11112233445788999999999999988665544
No 239
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.89 E-value=1.4e-05 Score=68.87 Aligned_cols=104 Identities=14% Similarity=0.006 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~---l~~~l--~~k~~ilVlNK~DL 159 (383)
...+.+||.... ..........+..+|+++.|+|+.++.+.... . +.... .+.|+++|+||+|+
T Consensus 65 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 65 WAILDVLDTAGQ---------EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp EEEEEEEECCSC---------GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred EEEEEEEECCCc---------hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 344566885332 22223334568889999999999875432221 1 11211 26789999999998
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCc-CCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQ-LGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~-~g~Gi~~L~~~l~~ 199 (383)
.+... .....+.....+..++.+|++ +|.|+.++.+.+.+
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~ 178 (183)
T 3kkq_A 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178 (183)
T ss_dssp STTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred hhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHH
Confidence 65221 112223334457889999999 99999988666544
No 240
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.89 E-value=1.1e-05 Score=70.33 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h-cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l-~~k~~ilVlNK~DL~ 160 (383)
...+.+||..-. ..........+..+|++++|+|+.++.+.... .+..+ . .+.|+++|+||+|+.
T Consensus 64 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 64 TIKLQIWDTAGQ---------ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp EEEEEEEEECCS---------GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEECCCc---------HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 356778885332 22333445678999999999998865432221 11111 1 167899999999997
Q ss_pred CHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.... ..........+..++.+|+++|.|+.++.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 175 (196)
T 3tkl_A 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 175 (196)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 65321 2222334456788999999999999988665544
No 241
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.89 E-value=6.3e-06 Score=71.09 Aligned_cols=104 Identities=10% Similarity=0.048 Sum_probs=58.2
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~~ 161 (383)
..+.+||. ||+ ..........+..+|++++|+|+.++.+..... +..+. .+.|+++|+||+|+.+
T Consensus 57 ~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 57 IKLQIWDT--------AGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEC------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred EEEEEEcC--------CCC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 56777874 333 233333345688999999999998754322211 11111 2578999999999975
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
... ......+....+..++.+|+++|.|+.++.+.+.+.
T Consensus 128 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 128 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 321 122223344567889999999999999886665443
No 242
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.88 E-value=7.6e-06 Score=69.16 Aligned_cols=103 Identities=12% Similarity=0.042 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||... + ..........+..+|++++|+|+.++.+..+.. +..+. .+.|+++|+||+|+.
T Consensus 51 ~~~~~~~D~~G---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 51 TVKFEIWDTAG---Q------ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEEEEECC---S------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCC---C------hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 45677888432 2 223334456789999999999998754332211 12221 267899999999997
Q ss_pred CH---H-HH-HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 161 SM---A-DR-NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 161 ~~---~-~~-~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+. . .. ....+.....+..++++|+++|.|+.++.+.+.
T Consensus 122 ~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1ek0_A 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164 (170)
T ss_dssp GSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 53 1 11 111223344578899999999999988866554
No 243
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.88 E-value=1.4e-05 Score=70.31 Aligned_cols=105 Identities=13% Similarity=0.004 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL 159 (383)
....+.+||.. |+ .+........+..+|++++|+|+..+.+..... +..+. .+.|+++|+||+|+
T Consensus 55 ~~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (203)
T 1zbd_A 55 KRIKLQIWDTA--------GL-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 125 (203)
T ss_dssp EEEEEEEEEEC--------CS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTC
T ss_pred eEEEEEEEECC--------Cc-hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 34567788843 22 233444556789999999999987654322111 11111 26789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+... ...........+..++.+|+++|.|+.++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (203)
T 1zbd_A 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 167 (203)
T ss_dssp TTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 75321 12222333445788999999999999888665544
No 244
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.88 E-value=5.5e-06 Score=71.20 Aligned_cols=105 Identities=11% Similarity=-0.031 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL 159 (383)
....+.+||.... .+........+..+|+++.|+|+.++.+..+. .+ .....+.|+++|+||+|+
T Consensus 54 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 54 ATVNLGLWDTAGQ---------EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp ----CEEECCCC----------CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEEEECCCC---------hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 3455668874322 11222233567889999999998765443221 11 112236899999999999
Q ss_pred CCHHHH------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMADR------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~~------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+.... ....+.....+. .++.+|+++|.|+.++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp HTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 654321 112223334464 7889999999999888665543
No 245
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.87 E-value=1.8e-06 Score=88.38 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=38.3
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCcc---------------cc------CCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMC---------------PA------APRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v------~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
.+|+|+|.+|||||||+|+|+..... .+ ...+|+|.......+ +..+.|+||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 47999999999999999999622111 01 112566655433222 4578999999986
Q ss_pred c
Q 016762 274 P 274 (383)
Q Consensus 274 ~ 274 (383)
.
T Consensus 94 d 94 (528)
T 3tr5_A 94 D 94 (528)
T ss_dssp T
T ss_pred h
Confidence 4
No 246
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.87 E-value=2e-05 Score=67.04 Aligned_cols=106 Identities=14% Similarity=-0.080 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHH-HHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEEcc
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLNRE 157 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l-~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l-----~~k~~ilVlNK~ 157 (383)
....+.+||. ||+...-...+ ...+..+|.++.|+|..++.+.... . +..+. .+.|+++|+||+
T Consensus 50 ~~~~~~~~D~--------~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~ 121 (175)
T 2nzj_A 50 EDTTLVVVDT--------WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121 (175)
T ss_dssp EEEEEEEECC--------C-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECT
T ss_pred EEEEEEEEec--------CCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEECh
Confidence 3456778885 33322111222 2457889999999998765432221 1 11111 268999999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
|+.+... ......+....+..++++|+++|.|+.++.+.+.+
T Consensus 122 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 165 (175)
T 2nzj_A 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165 (175)
T ss_dssp TCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred hhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 9975321 11112223345778999999999999988666544
No 247
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.87 E-value=1.2e-05 Score=70.01 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh--cCCCeEEEEEccCCCCHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL--GNRKRILVLNREDMISMA 163 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l--~~k~~ilVlNK~DL~~~~ 163 (383)
..+.+||.. || ..........+..+|++++|+|+..+.+..... +..+. ...|+++|+||+|+....
T Consensus 93 ~~~~i~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 93 IKFDIWDTA--------GQ-ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ 163 (208)
T ss_dssp EEEEEEECT--------TG-GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred eEEEEEECC--------Cc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence 567888853 32 223334556789999999999998764332211 22222 258999999999942211
Q ss_pred -HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 164 -DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 164 -~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
......+++...+..++++|++.|.|+.++.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence 123344555667788999999999999988766544
No 248
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.86 E-value=1.7e-05 Score=70.84 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=60.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL 159 (383)
....+.+||. ||+ ..........+..+|++++|+|+.++.+..+. . +.....+.|+++|+||+|+
T Consensus 80 ~~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 80 KPVHLHIWDT--------AGQ-DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEEEC------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred EEEEEEEEEC--------CCc-hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 3456778884 333 33344444678999999999998765433221 1 1111236899999999999
Q ss_pred CCHHHHH--------------HHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMADRN--------------AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~~~--------------~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+..... ...+.....+. .++.+|+++|.|+.++.+.+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp GSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 8653221 11223344565 78999999999999887665443
No 249
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.86 E-value=1.2e-05 Score=68.12 Aligned_cols=104 Identities=9% Similarity=-0.002 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HH-HHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~l-~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||.. |+ .+........+..+|++++|+|+.++.+..+. .+ ..+. ...|+++|.||+|+.
T Consensus 54 ~~~~~~~Dt~--------G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 54 LHKFLIWDTA--------GL-ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEEEC--------CS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEEcCC--------Cc-hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 3567788843 22 22334445678999999999999765433221 11 1111 256788999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+..+ ......+....+..++++|+++|.|+.++.+.+.+
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 165 (170)
T 1z0j_A 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISR 165 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence 5322 11222233455788999999999999988666543
No 250
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.86 E-value=1.1e-05 Score=79.84 Aligned_cols=41 Identities=29% Similarity=0.346 Sum_probs=28.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc--cccCCCCCceeEEE
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK 256 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pgtT~~~~ 256 (383)
..++|+++|.+|+|||||+|+|++... ......+|+|.+..
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 49 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLG 49 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEec
Confidence 357899999999999999999996532 22334578887653
No 251
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.86 E-value=2.6e-05 Score=66.67 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=64.6
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh---cCCC-eEEEEEccC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL---GNRK-RILVLNRED 158 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l---~~k~-~ilVlNK~D 158 (383)
..+.+||..-.. .........+..+|++++|+|+.++.+..+.. +.... ...| +++|+||+|
T Consensus 56 ~~~~~~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 56 VTLQIWDIGGQT---------IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp EEEEEEECTTCC---------TTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred EEEEEEECCCCc---------cccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 567788854322 11223345688999999999998754432211 11111 1456 789999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+... ......+....+..++++|+++|.|+.++.+.+.+
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (178)
T 2hxs_A 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAA 169 (178)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 965321 12222333455788999999999999888666544
No 252
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.86 E-value=9.5e-06 Score=69.41 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h--cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L--GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l--~~k~~ilVlNK~DL 159 (383)
...+.+||..... .........+..+|.++.|+|+.++.+.... .+..+ . .+.|+++|+||+|+
T Consensus 56 ~~~~~~~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 56 PARLDILDTAGQE---------EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp EEEEEEEECCCTT---------TTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred EEEEEEEECCCch---------hhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3567788854321 1222234567889999999998765432221 12222 1 26799999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+... ......+....+..++++|+++|.|+.++.+.+.+.
T Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 127 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA 169 (181)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 75322 122222334557789999999999999887665543
No 253
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.86 E-value=5.9e-05 Score=64.53 Aligned_cols=97 Identities=12% Similarity=-0.028 Sum_probs=63.0
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEEEc
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLNR 156 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l----~~k~~ilVlNK 156 (383)
....+.+||..-. .+ ...+..+|+++.|+|..++.+..+.. +.... .+.|+++|.||
T Consensus 52 ~~~~l~i~Dt~G~--------~~------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (178)
T 2iwr_A 52 QTHLVLIREEAGA--------PD------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117 (178)
T ss_dssp EEEEEEEEECSSS--------CC------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred EEEEEEEEECCCC--------ch------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 4456788885432 11 24578899999999998765433221 22222 25789999999
Q ss_pred cCCC-------CHHHHHHHHHHHHHc-CCeEEEeeCcCCCchhhhhHHHHH
Q 016762 157 EDMI-------SMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 157 ~DL~-------~~~~~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+|+. ..++...| .... +..++.+|+++|.|+.++.+.+.+
T Consensus 118 ~Dl~~~~~~~v~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 118 DRISASSPRVVGDARARAL---XADMKRCSYYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp TTCBTTBCCCSCHHHHHHH---HHHHSSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred ccccccccCcCCHHHHHHH---HHhhcCCeEEEEeccccCCHHHHHHHHHH
Confidence 9993 23333333 2333 567889999999999988665543
No 254
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.86 E-value=4.8e-05 Score=63.63 Aligned_cols=105 Identities=10% Similarity=-0.053 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~D 158 (383)
...++.+||..-.. .........+..+|.++.|+|+.++.+..+. ++..... +.|.++|+||+|
T Consensus 49 ~~~~~~~~D~~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D 119 (166)
T 2ce2_X 49 ETCLLDILDTAGQE---------EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEEEEECCCCS---------SCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEEECCCch---------hhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence 34567788854321 1122333567889999999998765332211 1112222 689999999999
Q ss_pred CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+... .....+...+.+..++.+|++.|.|+.++.+.+.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp CSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred hhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 986322 12222333455778999999999999888666543
No 255
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.85 E-value=5.2e-06 Score=71.54 Aligned_cols=106 Identities=15% Similarity=0.013 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH----hcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~----l~~k~~ilVlNK~DL 159 (383)
....+.+||.... ..........+..+|++++|+|+.++.+..+. .+... ..+.|+++|+||+|+
T Consensus 51 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 51 KPVNLGLWDTAGQ---------EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121 (186)
T ss_dssp EEEEEEEECCCCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHH
T ss_pred EEEEEEEEECCCC---------HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccc
Confidence 3456778884322 12222223467899999999999765433222 12121 227899999999999
Q ss_pred CCHHHH--------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMADR--------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~~--------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+.... ..........+. .++++|+++|.|+.++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHH
Confidence 754211 122223334565 88999999999999887665543
No 256
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.85 E-value=4.9e-06 Score=71.72 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||. ||+ ..........+..+|++++|+|+.++.+... ..+..++ .+.|+++|+||+|+
T Consensus 61 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 61 NLKLNVWDL--------GGQ-TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp TEEEEEEEE--------C-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred CEEEEEEEC--------CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 456778874 332 2222233456789999999999987644322 1233333 35789999999999
Q ss_pred CCHHHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+......+.+.+.. .+..++.+|+++|.|+.++.+.+.+.
T Consensus 132 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (183)
T 1moz_A 132 PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177 (183)
T ss_dssp TTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 764333333333321 12368899999999999887666543
No 257
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.85 E-value=9.3e-06 Score=68.72 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||.. |+ ..........+..+|++++|+|+..+.+.... .+..+. .+.|+++|+||+|+.
T Consensus 51 ~~~~~l~D~~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 51 KVKLQIWDTA--------GQ-ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEEEEEECCT--------TG-GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCC--------CC-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 3567788843 22 22223344668899999999999765432221 111111 267899999999995
Q ss_pred CHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 161 SMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 161 ~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.... .....+...+.+..++++|+++|.|+.++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3221 122223344557789999999999999887665543
No 258
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.84 E-value=6.8e-06 Score=81.22 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.8
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..++|+++|.+|+|||||+|+|++.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc
Confidence 4578999999999999999999974
No 259
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.84 E-value=1.1e-05 Score=68.45 Aligned_cols=105 Identities=15% Similarity=0.024 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l-~~k~~ilVlNK~DL 159 (383)
....+.+||..- + ..........+..+|.+++|+|+.++.+..... +.... .+.|+++|+||+|+
T Consensus 53 ~~~~l~i~Dt~G---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 123 (170)
T 1z08_A 53 KRVNLAIWDTAG---Q------ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123 (170)
T ss_dssp CEEEEEEEECCC---C-------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG
T ss_pred EEEEEEEEECCC---c------HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 345678888432 2 222333335678999999999987654322211 11111 36789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+... .....++....+..++.+|+++|.|+.++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 75321 12222334456788999999999999988665543
No 260
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.83 E-value=1.1e-05 Score=71.22 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH----HHhcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~----~~l~~k~~ilVlNK~DL 159 (383)
....+.+||..-. ..........+..+|++++|+|+.++.+..+. .+. ....+.|+++|+||+|+
T Consensus 71 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 71 KQVELALWDTAGQ---------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp EEEEEEEECCCCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEEEECCCc---------hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHh
Confidence 3456788885332 12222223467899999999998765432221 121 22237899999999999
Q ss_pred CCHHHHH--------------HHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMADRN--------------AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~~~--------------~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+..... ...++....+. .++.+|+++|.|+.++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196 (201)
T ss_dssp TTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 8653211 12223334455 7889999999999988766544
No 261
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.83 E-value=2.6e-06 Score=76.33 Aligned_cols=104 Identities=10% Similarity=-0.024 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMIS 161 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~~k~~ilVlNK~DL~~ 161 (383)
...+.+||.... ..........+..+|++++|+|+..+.+..+. .+.....+.|+++|+||+|+.+
T Consensus 63 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 63 PIKFNVWDTAGQ---------EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp EEEEEEEEECSG---------GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred EEEEEEEeCCCh---------HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 456778885332 22222233567899999999999875443221 1222223789999999999976
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.........+....+..++.+|+++|.|+.++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 171 (221)
T 3gj0_A 134 RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171 (221)
T ss_dssp CSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHH
T ss_pred ccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 43322222334456788999999999999888665543
No 262
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.83 E-value=4.2e-05 Score=67.20 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l-~~k~~ilVlNK~DL~ 160 (383)
...+.+||..-. ..........+..+|++++|+|+..+.+..+.. +..+ . .+.|+++|+||+|+.
T Consensus 76 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 76 RTVLQLWDTAGQ---------ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEEEECTTC---------TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEEEEECCCC---------cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 456788885332 223344556788999999999987654432211 1111 1 268999999999996
Q ss_pred CHH-------H-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 161 SMA-------D-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 161 ~~~-------~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
... . ...-..+....+..++++|++.|.|+.++.+.+.
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~ 192 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLA 192 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 321 0 1111122334577889999999999988765543
No 263
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.83 E-value=2.3e-05 Score=66.97 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH---HHhcCCCeEEEEEccCCCCH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD---QWLGNRKRILVLNREDMISM 162 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~---~~l~~k~~ilVlNK~DL~~~ 162 (383)
..+.+||.... ..........+..+|++++|+|+.++.+..... +. ....+.|+++|+||+|+.+.
T Consensus 58 ~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 58 VKLQIWDTAGQ---------ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp EEEEEEEETTG---------GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred EEEEEEcCCCc---------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 56778875332 122222334678999999999998753332211 11 11225789999999998754
Q ss_pred HH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 163 AD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 163 ~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
.. ...........+..++++|+++|.|+.++.+.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 31 1222233445578899999999999999877665543
No 264
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.83 E-value=6.4e-06 Score=72.04 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL 159 (383)
....+.+||.... ..........+..+|+++.|+|+.++.+..+. . +.....+.|+++|+||+|+
T Consensus 69 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 69 EEFILHLWDTAGQ---------EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEEEECCCc---------HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 4455678885332 22223333567899999999999875443321 1 2222236899999999999
Q ss_pred CCHH----HHHHHHHHHHHcCCe-EEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMA----DRNAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~----~~~~w~~~l~~~g~~-vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+.. ......+.....+.. ++.+|+++|.|+.++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (194)
T 3reg_A 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184 (194)
T ss_dssp CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHH
T ss_pred ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHH
Confidence 7421 112222334445665 899999999999988665544
No 265
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.81 E-value=1.4e-05 Score=69.62 Aligned_cols=105 Identities=11% Similarity=-0.034 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL 159 (383)
....+.+||...... ........+..+|++++|+|+.++.+.... . +..+. .+.|+++|+||+|+
T Consensus 69 ~~~~~~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 139 (189)
T 2gf9_A 69 KRIKLQIWDTAGQER---------YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139 (189)
T ss_dssp EEEEEEEEECCSCCS---------SCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred eEEEEEEEeCCCcHH---------HhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 345678888543221 112233567899999999998765432221 1 11111 26799999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.+... .....+.....+..++++|+++|.|+.++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 181 (189)
T 2gf9_A 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD 181 (189)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 75321 12222334455788999999999999988766544
No 266
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.81 E-value=1.1e-05 Score=78.49 Aligned_cols=23 Identities=52% Similarity=0.713 Sum_probs=21.0
Q ss_pred CceEEeEeecCCCChhHHHHhhh
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLL 238 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~ 238 (383)
...+|+++|.||||||||+|.|.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999996
No 267
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.81 E-value=1.2e-05 Score=70.65 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=59.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-------cCCCeEEEEEcc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-------GNRKRILVLNRE 157 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-------~~k~~ilVlNK~ 157 (383)
...+.+||. ||+ ..........+..+|++++|+|+..+.+.... .+..+. .+.|+++|+||+
T Consensus 72 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 142 (208)
T 2yc2_C 72 SVELFLLDT--------AGS-DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKT 142 (208)
T ss_dssp EEEEEEEET--------TTT-HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC
T ss_pred EEEEEEEEC--------CCc-HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECc
Confidence 456788884 343 34444455678999999999999765432221 111221 367899999999
Q ss_pred CCCC-HHH--HHHHHHHHHHcCCeEEEeeCcC-CCchhhhhHHHHH
Q 016762 158 DMIS-MAD--RNAWATYFAKQGTKVIFSNGQL-GMGTMKLSRLAKA 199 (383)
Q Consensus 158 DL~~-~~~--~~~w~~~l~~~g~~vi~iSa~~-g~Gi~~L~~~l~~ 199 (383)
|+.+ ... .....++....+..++.+|+++ |.|+.++.+.+.+
T Consensus 143 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 143 DLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp -------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHH
T ss_pred ccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHH
Confidence 9986 322 1233344556678899999999 9999988665544
No 268
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.80 E-value=2.5e-05 Score=68.13 Aligned_cols=106 Identities=11% Similarity=-0.020 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh---cCCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL---GNRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~---l~~~l---~~k~~ilVlNK~D 158 (383)
...+.+||.. |+ ..........+..+|++++|+|+.++.+.... . +.... .+.|+++|+||+|
T Consensus 55 ~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~D 125 (199)
T 2gf0_A 55 VCTLQITDTT--------GS-HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125 (199)
T ss_dssp EEEEEEEECC--------GG-GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTT
T ss_pred EEEEEEEeCC--------Ch-HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 4467788843 32 22233344568899999999998765432221 1 22221 2579999999999
Q ss_pred CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
+.+... ...........+..++.+|+++|.|+.++.+.+.+..
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 126 ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp CSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 975321 1222223345577899999999999999877665543
No 269
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.80 E-value=2.8e-05 Score=67.69 Aligned_cols=105 Identities=8% Similarity=-0.022 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL 159 (383)
....+.+||.... .+........+..+|++++|+|+..+.+.... .+..+. .+.|+++|+||+|+
T Consensus 72 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 142 (193)
T 2oil_A 72 AAVKAQIWDTAGL---------ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142 (193)
T ss_dssp EEEEEEEEEESCC---------CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred EEEEEEEEeCCCc---------hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCc
Confidence 3456778884322 11223334568899999999999765432221 122222 25789999999999
Q ss_pred CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
..... ......+....+..++.+|+++|.|+.++.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (193)
T 2oil_A 143 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 184 (193)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 75321 12222334456788999999999999988665543
No 270
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.80 E-value=6.3e-06 Score=82.34 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=34.2
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCc-c-----------------------------ccCCCCCceeEEEEEEe---CCc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRM-C-----------------------------PAAPRPGVTRVLKWVRF---GKD 263 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-~-----------------------------~v~~~pgtT~~~~~~~~---~~~ 263 (383)
.++|+++|.+|+|||||+|+|++... . ..+...|+|.+.....+ +..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 46899999999999999999985310 0 01125788888654333 457
Q ss_pred EEEEecCccc
Q 016762 264 LEFLDSPGII 273 (383)
Q Consensus 264 i~l~DTpG~i 273 (383)
+.++||||..
T Consensus 86 ~~iiDtpG~~ 95 (435)
T 1jny_A 86 FTIIDAPGHR 95 (435)
T ss_dssp EEECCCSSST
T ss_pred EEEEECCCcH
Confidence 8999999975
No 271
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.80 E-value=2.4e-05 Score=66.07 Aligned_cols=106 Identities=15% Similarity=0.009 Sum_probs=59.6
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEcc
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNRE 157 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~ 157 (383)
.....+.+||.. |+ ..........+..+|.++.|+|..++.+.... .+..+. .+.|+++|+||+
T Consensus 46 ~~~~~~~i~D~~--------g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 116 (166)
T 3q72_A 46 GEEASLMVYDIW--------EQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116 (166)
T ss_dssp TEEEEEEEEECC------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred CEEEEEEEEECC--------CC-ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 344567788743 32 33344444678999999999999865432221 112221 257999999999
Q ss_pred CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
|+.+... ...-.......+..++++|+++|.|+.++.+.+.+
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160 (166)
T ss_dssp TCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Confidence 9975432 11112233445778899999999999988665544
No 272
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.80 E-value=4.9e-05 Score=67.36 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=43.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHH-HHHHHhhhcCeEEEEEecCCCCCCCcH---HHHHHh-------cCCCeEEEEE
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWL-------GNRKRILVLN 155 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~-~l~~~idr~DlILeV~DaR~p~~~~~~---~l~~~l-------~~k~~ilVlN 155 (383)
+..+.+||. ||| ..+.. .....+..+|++++|+|+......... .+...+ .+.|+++|+|
T Consensus 53 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 53 GNSLTLIDL--------PGH-ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp CCEEEEEEC--------CCC-HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred ccEEEEEEC--------CCC-hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 467888884 343 34444 344668999999999998752111111 122211 1578999999
Q ss_pred ccCCCCHH
Q 016762 156 REDMISMA 163 (383)
Q Consensus 156 K~DL~~~~ 163 (383)
|+||....
T Consensus 124 K~Dl~~~~ 131 (214)
T 2fh5_B 124 KQDIAMAK 131 (214)
T ss_dssp CTTSTTCC
T ss_pred CCCCCCcc
Confidence 99997543
No 273
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.80 E-value=1.8e-05 Score=76.55 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=66.3
Q ss_pred CcEEEEcCCCCCcCCCchHHHH------HHHHHHHHhhhcCeEEEEEecCCCC---CCCcH-----HHHHH---hcCCCe
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL---STTHP-----LMDQW---LGNRKR 150 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~------~~~~l~~~idr~DlILeV~DaR~p~---~~~~~-----~l~~~---l~~k~~ 150 (383)
..+++||. ||+... +...+.+.++++|++|+|+|+.... ...+. ++..+ +.++|+
T Consensus 206 ~~~~l~Dt--------PG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ 277 (342)
T 1lnz_A 206 RSFVMADL--------PGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ 277 (342)
T ss_dssp CEEEEEEH--------HHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCB
T ss_pred ceEEEecC--------CCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCE
Confidence 45677773 554432 3344556688999999999996522 11111 12222 136899
Q ss_pred EEEEEccCCCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 151 ILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 151 ilVlNK~DL~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
++|+||+|+....+ ...+.+.+. ....++++|++++.|+.+|.+.+.+..
T Consensus 278 ilV~NK~Dl~~~~e~~~~l~~~l~-~~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 278 IIVANKMDMPEAAENLEAFKEKLT-DDYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp CBEEECTTSTTHHHHHHHHHHHCC-SCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred EEEEECccCCCCHHHHHHHHHHhh-cCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 99999999987543 233322221 115688899999999999877765543
No 274
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.79 E-value=2.6e-05 Score=68.04 Aligned_cols=104 Identities=11% Similarity=-0.006 Sum_probs=64.9
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~DL 159 (383)
....+.+||..... +........+..+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+
T Consensus 64 ~~~~~~i~D~~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 64 KQYLLGLYDTAGQE---------DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp CEEEEEEECCCCSS---------SSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEEEEEEEECCCCc---------chhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 34667888854321 1112223457889999999999765432221 12222237899999999999
Q ss_pred CCHHH--------------HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762 160 ISMAD--------------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 160 ~~~~~--------------~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.+... .....++....+. .++.+|+++|.|+.++.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188 (194)
T ss_dssp TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred cccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 76321 1112222334465 788999999999998866554
No 275
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.79 E-value=1.8e-05 Score=68.27 Aligned_cols=103 Identities=11% Similarity=0.044 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH---HHh-cCCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD---QWL-GNRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~---~~l-~~k~~ilVlNK~DL~~ 161 (383)
..+.+||.. |+ ..........+..+|++++|+|+..+.+..... +. ... .+.|+++|+||+|+.+
T Consensus 59 ~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 59 VKLQIWDTA--------GQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEEC--------CS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEeCC--------Cc-HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 567788843 22 233444556789999999999998654332211 11 111 2678999999999964
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
... ...........+..++.+|+++|.|+.++.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR 169 (186)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 321 12233444556788999999999999888665543
No 276
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.79 E-value=4.6e-05 Score=65.03 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=55.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcC---------CeEEEeeC
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQG---------TKVIFSNG 184 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g---------~~vi~iSa 184 (383)
..+..+|++++|+|+..+......+....+ .+.|+++|+||+|+.+... ......+...+ ..++++|+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 446889999999998875443332222222 3789999999999986321 11222222211 36888999
Q ss_pred cCCCchhhhhHHHHHhh
Q 016762 185 QLGMGTMKLSRLAKALA 201 (383)
Q Consensus 185 ~~g~Gi~~L~~~l~~l~ 201 (383)
++|.|+.++.+.+.+..
T Consensus 153 ~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVS 169 (178)
T ss_dssp SSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999998876665443
No 277
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.79 E-value=1.8e-05 Score=76.09 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D 158 (383)
.+..+.+||. ||+ ..+.......+..+|++|+|+|+.++.+... ..+..++. +.|+++|+||+|
T Consensus 207 ~~~~l~i~Dt--------~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~D 277 (329)
T 3o47_A 207 KNISFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277 (329)
T ss_dssp TTEEEEEEEC--------C------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CcEEEEEEEC--------CCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECcc
Confidence 4566778875 332 3444445567899999999999976554332 22333332 678999999999
Q ss_pred CCCHHHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+......+...+.. .+..++.+|+++|.|+.++.+.+.+
T Consensus 278 l~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 278 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp STTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHH
Confidence 9865444444443322 1235788999999999988666544
No 278
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.78 E-value=1.7e-05 Score=70.35 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH---HHh-cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~---~~l-~~k~~ilVlNK~DL~ 160 (383)
...+.+||..- + ..........+..+|++++|+|+.++.+.... .+. ... .+.|+++|+||+|+.
T Consensus 74 ~~~l~l~Dt~G---~------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 74 KVKLQIWDTAG---Q------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEEEEEECC---S------GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCC---c------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 45678888432 2 23344445678999999999998765432221 111 111 257899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+... ......+....+..++.+|+++|.|+.++.+.+.+
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (201)
T 2ew1_A 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 185 (201)
T ss_dssp GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4321 11222233455778899999999999988665543
No 279
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.77 E-value=1.9e-05 Score=68.57 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~-----~k~~ilVlNK~DL 159 (383)
+..+.+||..-... ........++.+|++++|+|+.++.+... ..+..++. +.|+++|+||+|+
T Consensus 65 ~~~~~~~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 65 NISFEVWDLGGQTG---------VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp TEEEEEEEECCSSS---------SCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred CEEEEEEECCCCHh---------HHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 56778888543211 11112235689999999999987654332 22333332 5789999999999
Q ss_pred CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+........+.+. ..+..++++|+++|.|+.++.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (189)
T 2x77_A 136 PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181 (189)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHH
Confidence 86533233323221 123468889999999999887665543
No 280
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.77 E-value=8.2e-05 Score=65.40 Aligned_cols=106 Identities=16% Similarity=0.002 Sum_probs=66.0
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHH-HHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEE
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLN 155 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l-~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlN 155 (383)
......+.+||..-.... ...+ ...+..+|++++|+|..++.+..+. .+..+. .+.|+++|.|
T Consensus 68 ~~~~~~l~i~Dt~g~~~~---------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 138 (195)
T 3cbq_A 68 DKEEVTLVVYDIWEQGDA---------GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138 (195)
T ss_dssp TTEEEEEEEECCCCCSGG---------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred CCEEEEEEEEecCCCccc---------hhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence 334566788885433211 1112 2457889999999998765432221 122222 2689999999
Q ss_pred ccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 156 REDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
|+|+.+... ...........+..++.+|++.|.|+.++.+.+.
T Consensus 139 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~ 183 (195)
T 3cbq_A 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 183 (195)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred chhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHH
Confidence 999975321 1222233344567889999999999988865543
No 281
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.76 E-value=1.6e-05 Score=71.20 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=66.3
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HH----HHHHhcCCCeEEEEEcc
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL----MDQWLGNRKRILVLNRE 157 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~----l~~~l~~k~~ilVlNK~ 157 (383)
......+.+||..-. ..........+..+|++++|+|+.++.+..+ .. +.....+.|+++|.||+
T Consensus 71 ~~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 141 (214)
T 3q3j_B 71 EEQRVELSLWDTSGS---------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 141 (214)
T ss_dssp --CEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECG
T ss_pred CCEEEEEEEEECCCC---------HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 334566788885332 2222233356789999999999987644332 11 11222368999999999
Q ss_pred CCCC-----------------HHHHHHHHHHHHHcCC-eEEEeeCcCCCc-hhhhhHHHHHh
Q 016762 158 DMIS-----------------MADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKAL 200 (383)
Q Consensus 158 DL~~-----------------~~~~~~w~~~l~~~g~-~vi~iSa~~g~G-i~~L~~~l~~l 200 (383)
|+.+ .++...| ....+. .++.+|+++|.| +.++.+.+.+.
T Consensus 142 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 142 DLRTDLSTLMELSHQKQAPISYEQGCAI---AKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp GGGGCHHHHHHHHHTTCCCCCHHHHHHH---HHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhcccccCccCHHHHHHH---HHHcCCCEEEEeccCCCcccHHHHHHHHHHH
Confidence 9954 2222333 344566 789999999998 98886655443
No 282
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.76 E-value=3e-05 Score=66.29 Aligned_cols=104 Identities=9% Similarity=-0.009 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNR 156 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-----~~k~~ilVlNK 156 (383)
...+.+||. ||+ ..........+..+|++++|+|+.++.+..+. ++.... .+.|+++|+||
T Consensus 57 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 57 VATMQVWDT--------AGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp CEEEEEECC--------C-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred EEEEEEEEC--------CCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 456778874 333 33344444668999999999999765432221 111111 35799999999
Q ss_pred cCCCCHHH---HHHHHHHHH-HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 157 EDMISMAD---RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 157 ~DL~~~~~---~~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+|+..... .....++.. ..+..++++|+++|.|+.++.+.+.+
T Consensus 128 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (182)
T 1ky3_A 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174 (182)
T ss_dssp TTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHH
Confidence 99964321 111112222 23567899999999999988666544
No 283
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.76 E-value=8.5e-06 Score=86.14 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=35.8
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-----------ccCC------CCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----------~v~~------~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
..+|+|+|.+|+|||||+|+|++.... .+.+ .+|+|.......+ +..+.|+||||...
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 457999999999999999999842111 1111 3566665432222 45689999999964
No 284
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.76 E-value=5.8e-05 Score=65.54 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHH-HHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTE-KELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~-~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~D 158 (383)
...+.+||. ||+ .... ......+..+|++++|+|+.++.+.... ++.... .+.|+++|+||+|
T Consensus 68 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (189)
T 1z06_A 68 RIKIQLWDT--------AGQ-ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138 (189)
T ss_dssp EEEEEEEEC--------CCS-HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred EEEEEEEEC--------CCc-hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 456888884 232 3334 4445678999999999999865432221 122222 3689999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCcCC---Cchhhhh
Q 016762 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLG---MGTMKLS 194 (383)
Q Consensus 159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g---~Gi~~L~ 194 (383)
+.+..+ ......+....+..++.+|++.| .|+.++.
T Consensus 139 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~ 179 (189)
T 1z06_A 139 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF 179 (189)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred ccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHH
Confidence 965321 11122233445778999999999 5555543
No 285
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.75 E-value=1.1e-05 Score=71.49 Aligned_cols=105 Identities=15% Similarity=0.022 Sum_probs=65.1
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNRED 158 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~D 158 (383)
.....+.+||.... ..........+..+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|
T Consensus 75 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 145 (204)
T 4gzl_A 75 GKPVNLGLWDTAGL---------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145 (204)
T ss_dssp -CEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHH
T ss_pred CEEEEEEEEECCCc---------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechh
Confidence 34455668884322 22223333567899999999999875443332 122222 2789999999999
Q ss_pred CCCHHHH--------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762 159 MISMADR--------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 159 L~~~~~~--------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+.+.... .....+....+. .++++|+++|.|+.++.+.+.
T Consensus 146 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
T ss_dssp HHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred hccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 9764321 112222334453 588999999999988866554
No 286
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.75 E-value=1.8e-05 Score=69.81 Aligned_cols=103 Identities=12% Similarity=0.078 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+.++.+||.. |+ ..........+..+|.+++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+
T Consensus 68 ~~~l~i~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 138 (198)
T 1f6b_A 68 GMTFTTFDLG--------GH-IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138 (198)
T ss_dssp TEEEEEEEEC--------C-----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred CEEEEEEECC--------Cc-HhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCc
Confidence 3667788842 32 2222233356789999999999987643322 2233332 36899999999999
Q ss_pred CC---HHHHHHHHHHHH--------------HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 160 IS---MADRNAWATYFA--------------KQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 160 ~~---~~~~~~w~~~l~--------------~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.. .++...+..... ..+..++.+|+++|.|+.++.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp TTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 74 333333322110 0224678899999999988866543
No 287
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.75 E-value=6.3e-05 Score=73.02 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=67.7
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA 163 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~ 163 (383)
...+.+++++|..- +. +....++..+|++++|+|+....... .+...+.++|.++|+||+|+.+..
T Consensus 168 ~~~~~~~iiiDTpG--i~----------~~~~~~~~~aD~vl~V~d~~~~~~~~--~l~~~~~~~p~ivVlNK~Dl~~~~ 233 (355)
T 3p32_A 168 EAAGFDVILIETVG--VG----------QSEVAVANMVDTFVLLTLARTGDQLQ--GIKKGVLELADIVVVNKADGEHHK 233 (355)
T ss_dssp HHTTCCEEEEEECS--CS----------SHHHHHHTTCSEEEEEEESSTTCTTT--TCCTTSGGGCSEEEEECCCGGGHH
T ss_pred hhCCCCEEEEeCCC--CC----------cHHHHHHHhCCEEEEEECCCCCccHH--HHHHhHhhcCCEEEEECCCCcChh
Confidence 34578999999643 11 11123469999999999976432221 111122356999999999998765
Q ss_pred HHHHHHHHHHHc-----------CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 164 DRNAWATYFAKQ-----------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 164 ~~~~w~~~l~~~-----------g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
........+.+. +..++++|+++|.|+.+|.+.+.+..
T Consensus 234 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 234 EARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 443333333321 35789999999999999877766543
No 288
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.73 E-value=1.5e-05 Score=69.61 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||..-. ..........+..+|++++|+|+..+.+..+.. +..+. .+.|+++|+||+|+.
T Consensus 69 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 69 QIKLQIWDTAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEEECCTTG---------GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCc---------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 456788885322 222223346788999999999997654322211 11221 267899999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+... ......+..+.+..++.+|+++|.|+.++.+.+.
T Consensus 140 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 4321 1222233445678899999999999998866554
No 289
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.72 E-value=1.9e-05 Score=69.21 Aligned_cols=104 Identities=12% Similarity=-0.024 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~D 158 (383)
....+.+||..- + .. .......+..+|++++|+|+.++.+..+. .+.... .+.|+++|+||+|
T Consensus 74 ~~~~~~l~Dt~G---~-----~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 143 (196)
T 2atv_A 74 EVVSMEILDTAG---Q-----ED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143 (196)
T ss_dssp EEEEEEEEECCC---C-----CC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred EEEEEEEEECCC---C-----Cc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcc
Confidence 345677888432 2 22 23334678899999999999865433221 122222 3678999999999
Q ss_pred CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCC-chhhhhHHHHH
Q 016762 159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGM-GTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~-Gi~~L~~~l~~ 199 (383)
+.+... ......+....+..++.+|++.|. |+.++.+.+.+
T Consensus 144 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~ 187 (196)
T 2atv_A 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCR 187 (196)
T ss_dssp GGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHH
Confidence 965321 112222333457789999999999 99888665543
No 290
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.72 E-value=2e-05 Score=69.52 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||. ||+ ..........++.+|++++|+|+.++.+.... .+..+. .+.|+++|+||+|+.
T Consensus 73 ~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDT--------AGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECC--------TTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred eeEEEEEcC--------CCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 356778884 444 33444445678999999999999865433221 111111 267899999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+... ......+....+..++.+|+++|.|+.++.+.+.+
T Consensus 144 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4321 12333444556788999999999999988665543
No 291
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.72 E-value=4.8e-05 Score=64.85 Aligned_cols=104 Identities=7% Similarity=-0.064 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNR 156 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-----~~k~~ilVlNK 156 (383)
...+.+||..- + ..........+..+|+++.|+|+.++.+.... ++.... .+.|+++|+||
T Consensus 55 ~~~~~i~Dt~G---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 125 (177)
T 1wms_A 55 FVTMQIWDTAG---Q------ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125 (177)
T ss_dssp EEEEEEEECCC---C------GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEEC
T ss_pred EEEEEEEeCCC---c------hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEEC
Confidence 35678888432 2 22333444678999999999999865432221 122222 35699999999
Q ss_pred cCCCCHHH-HHHHHHHHH-HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 157 EDMISMAD-RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 157 ~DL~~~~~-~~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+|+..... .....++.. ..+..++.+|+++|.|+.++.+.+.+
T Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 126 IDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp TTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred CcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 99974221 122222233 33567899999999999888665443
No 292
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.71 E-value=3.3e-05 Score=69.75 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=68.7
Q ss_pred cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEc
Q 016762 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNR 156 (383)
Q Consensus 83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l-~~k~~ilVlNK 156 (383)
.....+.+.+||...+ +++......++..+|.++.|+|..++.+..+.. +..+ . .+.|+++|.||
T Consensus 57 ~~~~~v~l~iwDtaGq---------e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK 127 (216)
T 4dkx_A 57 LEDRTIRLQLWDTAGL---------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127 (216)
T ss_dssp CSSCEEEEEEECCSCT---------TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEEC
T ss_pred ecceEEEEEEEECCCc---------hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence 3444567789986543 223334456789999999999987765544321 1111 1 25789999999
Q ss_pred cCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762 157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 157 ~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
+||..... ..+..++..+.+..++.+||++|.|+.++-+.+
T Consensus 128 ~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred cchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 99965321 112222334557888899999999999875544
No 293
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.89 E-value=4.8e-06 Score=73.54 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=64.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc----CCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l~----~k~~ilVlNK~DL 159 (383)
....+.+||. ||+ ..........+..+|++++|+|+.++.+..+. .+...+. +.|+++|+||+|+
T Consensus 76 ~~~~l~i~Dt--------~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl 146 (204)
T 3th5_A 76 KPVNLGLWDT--------AGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
Confidence 3445556763 343 34444445678899999999999876554432 2222222 6789999999999
Q ss_pred CCHHHH--------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHH
Q 016762 160 ISMADR--------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 160 ~~~~~~--------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l 197 (383)
.+.... ....++....+. .++++|+++|.|+.++.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 764311 111122223344 67889999999998876554
No 294
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.71 E-value=0.00025 Score=68.67 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=60.3
Q ss_pred hhhcCeEEEEEecCCCCCCC-cH--H-HHHHh---cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCch
Q 016762 118 LKLMDVVIEVRDARIPLSTT-HP--L-MDQWL---GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (383)
Q Consensus 118 idr~DlILeV~DaR~p~~~~-~~--~-l~~~l---~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi 190 (383)
...+|.+|+|+|+..+.+.. .. . +..+. .++|+++|+||+|+..........+.+...+..++++|+++|.|+
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI 323 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence 45699999999987654211 11 1 22222 278999999999999877665555555566778999999999999
Q ss_pred hhhhHHHHHhh
Q 016762 191 MKLSRLAKALA 201 (383)
Q Consensus 191 ~~L~~~l~~l~ 201 (383)
.+|.+.+.+..
T Consensus 324 ~~l~~~i~~~l 334 (357)
T 2e87_A 324 DLVKEEIIKTL 334 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99877665543
No 295
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.70 E-value=1e-05 Score=83.94 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=37.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCC-CceeEE--EEEEe-----------C--------CcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL--KWVRF-----------G--------KDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-gtT~~~--~~~~~-----------~--------~~i~l~DTpG~i 273 (383)
++++|+++|.+|+|||||+|+|++... ....+ |+|.+. ..... + ..+.++||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 456899999999999999999997532 23333 555542 22211 0 148999999974
No 296
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.70 E-value=1.7e-05 Score=69.42 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL 159 (383)
+..+.+||..-. ..........+..+|++++|+|+.++.+..+. .+..++ .+.|+++|.||+|+
T Consensus 66 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (190)
T 1m2o_B 66 NIKFTTFDLGGH---------IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136 (190)
T ss_dssp TEEEEEEECCCS---------GGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCC---------HHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCC
Confidence 366778885332 11122223457899999999999876433221 233332 36899999999999
Q ss_pred CCHHHHHHHHHHHHH------------cCCeEEEeeCcCCCchhhhhHHHH
Q 016762 160 ISMADRNAWATYFAK------------QGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 160 ~~~~~~~~w~~~l~~------------~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
......+...+.+.. .+..++.+|+++|.|+.++.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 137 PNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp TTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 752222233333221 234678899999999988866543
No 297
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.69 E-value=6e-05 Score=67.01 Aligned_cols=105 Identities=7% Similarity=-0.041 Sum_probs=64.9
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~-~k~~ilVlNK~DL~~ 161 (383)
..+.+||..-. .+........+..+|++++|+|+.++.+..+. .+..... +.|+++|+||+|+.+
T Consensus 61 ~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 61 IKFNVWDTAGQ---------EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp EEEEEEEECSG---------GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred EEEEEEecCCc---------hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 45778885332 11222223567889999999999876443322 1122222 579999999999986
Q ss_pred HHHH-HHHH-HHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 162 MADR-NAWA-TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 162 ~~~~-~~w~-~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
.... .... ......+..++.+|+++|.|+.++.+.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp ---CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 5321 2222 23334567899999999999999876665543
No 298
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.68 E-value=1.6e-05 Score=70.12 Aligned_cols=104 Identities=10% Similarity=-0.011 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||.... ..........+..+|++++|+|+..+.+..... +..+. .+.|+++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 56 TVKLQIWDTAGQ---------ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEECCTTT---------TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCCh---------HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 456788885332 112222335678999999999997654322211 11111 257899999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+... ......+....+..++++|++.|.|+.++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 167 (206)
T 2bcg_Y 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 167 (206)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 6321 12222333456778999999999999988666544
No 299
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.67 E-value=1.9e-05 Score=80.87 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=35.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccc---------------cC------CCCCceeEEEEEE---eCCcEEEEecCcc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP---------------AA------PRPGVTRVLKWVR---FGKDLEFLDSPGI 272 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~---------------v~------~~pgtT~~~~~~~---~~~~i~l~DTpG~ 272 (383)
..+|+++|.+|+|||||+|+|++..... +. ...|+|.+..... -+..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 3579999999999999999998632111 11 1345554422222 2456899999998
Q ss_pred cc
Q 016762 273 IP 274 (383)
Q Consensus 273 i~ 274 (383)
..
T Consensus 93 ~d 94 (529)
T 2h5e_A 93 ED 94 (529)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 300
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.67 E-value=1.5e-05 Score=70.73 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=65.3
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL 159 (383)
....+.+||..... .........+..+|++++|+|+.++.+.... .+ .....+.|+++|+||+|+
T Consensus 71 ~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (207)
T 2fv8_A 71 KQVELALWDTAGQE---------DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141 (207)
T ss_dssp EEEEEEEEECTTCT---------TCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEEEECCCcH---------HHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhh
Confidence 34567888853321 1122223467899999999998765432221 11 122237899999999999
Q ss_pred CCHHHHHHH--------------HHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHh
Q 016762 160 ISMADRNAW--------------ATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 160 ~~~~~~~~w--------------~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
.+......+ .+.....+. .++.+|+++|.|+.++.+.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 764322211 112223344 78899999999999887665543
No 301
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.67 E-value=0.0001 Score=64.12 Aligned_cols=100 Identities=9% Similarity=-0.032 Sum_probs=63.9
Q ss_pred cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEE
Q 016762 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLN 155 (383)
Q Consensus 83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l-----~~k~~ilVlN 155 (383)
+......+.+||...... .. .+..+|+++.|+|..++.+..+. . +..+. .+.|+++|.|
T Consensus 62 ~~~~~~~l~i~Dt~G~~~---------~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 127 (184)
T 3ihw_A 62 VDGQSYLLLIRDEGGPPE---------LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGT 127 (184)
T ss_dssp ETTEEEEEEEEECSSSCC---------HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEE
T ss_pred ECCEEEEEEEEECCCChh---------hh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 334456678898543311 11 67789999999999875443321 1 22221 2468999999
Q ss_pred ccCCC-------CHHHHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHH
Q 016762 156 REDMI-------SMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 156 K~DL~-------~~~~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
|+|+. ..++...| ....+ ..++.+|+++|.|+.++.+.+.+
T Consensus 128 K~Dl~~~~~~~v~~~~~~~~---~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 128 QDAISAANPRVIDDSRARKL---STDLKRCTYYETCATYGLNVERVFQDVAQ 176 (184)
T ss_dssp CTTCBTTBCCCSCHHHHHHH---HHHTTTCEEEEEBTTTTBTHHHHHHHHHH
T ss_pred CcccccccccccCHHHHHHH---HHHcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99993 23333333 34444 67899999999999988665443
No 302
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.66 E-value=3.2e-06 Score=75.65 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChhHHHHhhhcC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..+|+++|++|||||||+|+|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 303
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.66 E-value=1.9e-05 Score=79.95 Aligned_cols=107 Identities=10% Similarity=0.016 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D 158 (383)
.+..+.+||.... ..+.......++.+|++|+|+|+.++.+... ..+..++ .++|+++|+||+|
T Consensus 364 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 434 (497)
T 3lvq_E 364 KNVKFNVWDVGGQ---------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 434 (497)
T ss_dssp SSCEEEEEEECCC---------GGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCS
T ss_pred CCEEEEEEECCCc---------HHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCC
Confidence 4567888885432 2233334467899999999999987543322 1233332 2689999999999
Q ss_pred CCCHHHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 159 L~~~~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
|.+........+.+.. .+..++++|+++|.|+.++.+.+.+..
T Consensus 435 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 435 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp SSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9754322222222211 123588999999999999877765543
No 304
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.65 E-value=3.1e-05 Score=72.42 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=33.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccccC-------CCCCceeE--E----EEEEeCCcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV--L----KWVRFGKDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-------~~pgtT~~--~----~~~~~~~~i~l~DTpG~i~ 274 (383)
+++++||-+|+|||||||.|+|......+ +.+.+++. + |...+...+.+.|||||-.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence 57999999999999999999975432222 22233221 1 1111234678999999964
No 305
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.65 E-value=4.9e-05 Score=75.03 Aligned_cols=94 Identities=17% Similarity=0.064 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCC-H
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS-M 162 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~-~ 162 (383)
+..+.+||. ||| ..+.+.+...+..+|++++|+|+..+......+....+ .+.| +++++||+|+.+ .
T Consensus 74 ~~~~~iiDt--------pG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~ 144 (405)
T 2c78_A 74 KRHYSHVDC--------PGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP 144 (405)
T ss_dssp SCEEEEEEC--------CCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH
T ss_pred CeEEEEEEC--------CCh-HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH
Confidence 456778874 555 34566677788999999999999876543322222222 2567 789999999984 3
Q ss_pred HHHH----HHHHHHHHcC-----CeEEEeeCcCCCc
Q 016762 163 ADRN----AWATYFAKQG-----TKVIFSNGQLGMG 189 (383)
Q Consensus 163 ~~~~----~w~~~l~~~g-----~~vi~iSa~~g~G 189 (383)
+..+ ...+++...+ ..++++|+++|.|
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 145 ELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 2211 2333444444 4688999998876
No 306
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.65 E-value=1.3e-05 Score=80.75 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=32.5
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCcc------------------------cc------CCCCCceeEEEEE--Ee-CC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------PA------APRPGVTRVLKWV--RF-GK 262 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~------------------------~v------~~~pgtT~~~~~~--~~-~~ 262 (383)
..++|+++|.+|+|||||+|+|+..... .+ ....|+|.+.... .. +.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 3578999999999999999999742110 01 1235778776432 22 45
Q ss_pred cEEEEecCccc
Q 016762 263 DLEFLDSPGII 273 (383)
Q Consensus 263 ~i~l~DTpG~i 273 (383)
.+.++||||..
T Consensus 122 ~~~iiDtPGh~ 132 (467)
T 1r5b_A 122 RFSLLDAPGHK 132 (467)
T ss_dssp EEEECCCCC--
T ss_pred EEEEEECCCcH
Confidence 68999999974
No 307
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.65 E-value=0.00013 Score=67.25 Aligned_cols=79 Identities=11% Similarity=0.001 Sum_probs=53.9
Q ss_pred hcCeEEEEEecCCC--CCCCcHH--HHHH-----hcCCCeEEEEEccCCCCHHHHHHHHHHHHH-cCCeEEEeeCcCCCc
Q 016762 120 LMDVVIEVRDARIP--LSTTHPL--MDQW-----LGNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG 189 (383)
Q Consensus 120 r~DlILeV~DaR~p--~~~~~~~--l~~~-----l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~g~~vi~iSa~~g~G 189 (383)
.+|+++.|+|+.++ .+..... +..+ ..+.|+++|.||+||.+........+.... .+..++.+|+++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999876 4332211 1221 136899999999999876555444333333 367788999999999
Q ss_pred hhhhhHHHH
Q 016762 190 TMKLSRLAK 198 (383)
Q Consensus 190 i~~L~~~l~ 198 (383)
+.++.+.+.
T Consensus 242 v~elf~~l~ 250 (255)
T 3c5h_A 242 VDLAFSTLV 250 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988866554
No 308
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.65 E-value=1.6e-05 Score=68.48 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=65.4
Q ss_pred CcEEEEcCCCCCcCCCchHHHH-HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAK-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~-~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~ 161 (383)
..+.+||..-... +....+. ........+..+|++++|+|+..+.+.....+...+ .+.|+++|+||+||..
T Consensus 52 ~~~~l~Dt~G~~~--~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 52 MPLHIIDTAGLRE--ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp EEEEEEECCCCSC--CSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred eEEEEEECCCccc--chhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 4577888543211 1111221 122334568999999999999887765543322221 1579999999999853
Q ss_pred HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
... .+ ....+..++++|+++|.|+.++.+.+.+.
T Consensus 130 ~~~--~~---~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 130 ETL--GM---SEVNGHALIRLSARTGEGVDVLRNHLKQS 163 (172)
T ss_dssp CCC--EE---EEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred chh--hh---hhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 210 01 11124568889999999999887766544
No 309
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.64 E-value=6.2e-05 Score=65.93 Aligned_cols=84 Identities=12% Similarity=-0.050 Sum_probs=55.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCCCCHHH--------------HHHHHHHHHHc
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ 175 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL~~~~~--------------~~~w~~~l~~~ 175 (383)
..+..+|++++|+|+.++.+..+. . +.....+.|+++|+||+|+.+... ...........
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 467889999999999765443322 1 112223789999999999975211 11111222344
Q ss_pred CC-eEEEeeCcCCCchhhhhHHHHH
Q 016762 176 GT-KVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 176 g~-~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+. .++.+|+++|.|+.++.+.+.+
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~ 191 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIV 191 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHH
Confidence 55 7899999999999988766544
No 310
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.63 E-value=6e-05 Score=68.01 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=34.2
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccccCCCC--CceeEEEEEEeCC---cEEEEecCccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~i~l~DTpG~i 273 (383)
..||.+||-+|||||||+|+++... ......| |.......+..+. .+.+.||+|--
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 4689999999999999999998643 2222222 2222222333332 36799999963
No 311
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.63 E-value=2.1e-05 Score=70.46 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
...+|+++|.+|||||||+|+|.+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999854
No 312
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.61 E-value=5.9e-05 Score=74.97 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=38.8
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc---ccCCCCCceeEEEEEEe-C----CcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRF-G----KDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~---~v~~~pgtT~~~~~~~~-~----~~i~l~DTpG~i~ 274 (383)
.++++|||.+|+|||||||.|.|.... .....++.|+....+.. . ..+.+.|||||-.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 345999999999999999999986421 12224666665322211 1 2578999999964
No 313
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.61 E-value=0.00086 Score=57.57 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=63.0
Q ss_pred cEEEEcCCCC--CcCCCchHHHHHHHHHHHH----hhhcCeEEEEEecCCCCC-----------CCcHHHHHHh--cCCC
Q 016762 89 DLYYWTKSLR--PVQWYPGHIAKTEKELKDQ----LKLMDVVIEVRDARIPLS-----------TTHPLMDQWL--GNRK 149 (383)
Q Consensus 89 ~~vi~~~~L~--~~qw~Pgh~~~~~~~l~~~----idr~DlILeV~DaR~p~~-----------~~~~~l~~~l--~~k~ 149 (383)
.+.+||...- ...|-...+..+....... .+.+++++.|.|+..... ....++...+ .+.|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 5778885431 1123322234444444433 555778888888653110 0011122222 3789
Q ss_pred eEEEEEccCCCCHH--HHHHHHHHHHHcCC-------eEEEeeCcCCCchhhhhHHHHHh
Q 016762 150 RILVLNREDMISMA--DRNAWATYFAKQGT-------KVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 150 ~ilVlNK~DL~~~~--~~~~w~~~l~~~g~-------~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+++|+||+|+.... ....+.+ +.+. .++++|+++|.|+.++.+.+.+.
T Consensus 125 iilv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 125 TIVAVNKLDKIKNVQEVINFLAE---KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 181 (190)
T ss_dssp EEEEEECGGGCSCHHHHHHHHHH---HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred eEEEeehHhccCcHHHHHHHHHH---HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence 99999999998753 2333333 3343 36899999999999886665443
No 314
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.61 E-value=1.3e-05 Score=74.29 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCcCCCch-HHHHHHHHHH-HHh--hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPG-HIAKTEKELK-DQL--KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pg-h~~~~~~~l~-~~i--dr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~ 160 (383)
+.++.+||......- .+. ......+.+. ..+ ..+|+|+.|+|+..+ ..+..+...+. +.|+++|+||+|+.
T Consensus 47 ~~~~~lvDtpG~~~~-~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 47 EHLIEITDLPGVYSL-VANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp TEEEEEEECCCCSSC-C------CHHHHHHHHHHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred CeEEEEEeCCCcccc-cccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 447788885433211 010 0002222232 445 889999999999863 22223333333 68999999999987
Q ss_pred CHHHHHHHH-HHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 161 SMADRNAWA-TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 161 ~~~~~~~w~-~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
......... ......|..++++|+++|.|+.+|.+.+.++
T Consensus 124 ~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 124 EHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 543211111 1223457889999999999999887665443
No 315
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.60 E-value=3.3e-05 Score=80.46 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-------CCCcHHH---HHHhcCCCeEEEEE
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLM---DQWLGNRKRILVLN 155 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-------~~~~~~l---~~~l~~k~~ilVlN 155 (383)
.+..+.+||. ||| +.+.+.+...+..+|++|.|+|+..+. .....+. ...+..+++++|+|
T Consensus 243 ~~~~~~iiDT--------PG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvN 313 (611)
T 3izq_1 243 HRANFTIVDA--------PGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 313 (611)
T ss_dssp SSCEEEEEEC--------CSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCceEEEEEC--------CCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence 3456777774 555 445666666789999999999998631 1111111 11122355899999
Q ss_pred ccCCCCH--HH----HHHHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762 156 REDMISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 156 K~DL~~~--~~----~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L 193 (383)
|+|+.+. .. ......++...| ..++++|+++|.|+.++
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999872 11 222223344444 47899999999999865
No 316
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.59 E-value=5e-05 Score=75.81 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=63.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHH------HhcCCCeEEEEEc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQ------WLGNRKRILVLNR 156 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~----~~~~l~~------~l~~k~~ilVlNK 156 (383)
+..+.+||. ||| ..+.+.+...+..+|+++.|+|+.++... ...+..+ .+...++++++||
T Consensus 83 ~~~~~iiDt--------pG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 83 KYFFTIIDA--------PGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp SCEEEECCC--------SSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred CeEEEEEEC--------CCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence 456777774 555 45566677788999999999999874110 1112111 1223468999999
Q ss_pred cCCCC----HHH----HHHHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762 157 EDMIS----MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 157 ~DL~~----~~~----~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L 193 (383)
+|+.+ .+. .....+++...+ ..++++|++.|.|+.++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 99987 221 223334445545 46889999999998744
No 317
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.59 E-value=0.00022 Score=62.42 Aligned_cols=103 Identities=8% Similarity=-0.063 Sum_probs=63.7
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHH---HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEE
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKEL---KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVL 154 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l---~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-------~~k~~ilVl 154 (383)
.....+.+||...... +.... ...+..+|++++|+|+.++.......+..++ .+.|+++|.
T Consensus 66 ~~~~~l~i~Dt~G~~~---------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~ 136 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMD---------FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136 (196)
T ss_dssp TTSCCEEEEECCSSCC---------TTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeeEEEEEECCCCHH---------HHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 4557889999654321 11222 4567889999999999875211112222222 267999999
Q ss_pred EccCCCCHHHH----HH----HHHHHHH-----cCCeEEEeeCcCCCchhhhhHHH
Q 016762 155 NREDMISMADR----NA----WATYFAK-----QGTKVIFSNGQLGMGTMKLSRLA 197 (383)
Q Consensus 155 NK~DL~~~~~~----~~----w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l 197 (383)
||+||.+.+.. +. ..+.+.+ .+..++.+|+++ .|+.++.+.+
T Consensus 137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred eccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 99999874321 11 1122222 345778899999 9988875543
No 318
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.57 E-value=0.00013 Score=72.29 Aligned_cols=57 Identities=26% Similarity=0.243 Sum_probs=36.1
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCc-----cccCCCCCceeEEEEEEe--CCcEEEEecCccccC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~~~pgtT~~~~~~~~--~~~i~l~DTpG~i~~ 275 (383)
..++|+|.+|||||||||.|+|-.. +.++. .-+|+....... ..++.+.|+||+-..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecceeEEeccccccCCeeehHhhcccch
Confidence 4699999999999999999998321 12222 123443222222 246899999999643
No 319
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.57 E-value=2.3e-05 Score=78.87 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=62.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~ 195 (383)
..+..+|++++|+|+..+......++...+..+|+++|+||+|+.+....... +.+ ..+..++.+|+++|.|+.+|.+
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~-~~~-~~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSL-EYP-ENITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTC-CCC-TTCCCEEEEBTTTTBSHHHHHH
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHH-HHh-ccCCcEEEEECCCCCCHHHHHH
Confidence 45788999999999998777666666666677899999999999876542210 000 0245789999999999999877
Q ss_pred HHHHh
Q 016762 196 LAKAL 200 (383)
Q Consensus 196 ~l~~l 200 (383)
.+.+.
T Consensus 377 ~i~~~ 381 (462)
T 3geh_A 377 AILEI 381 (462)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 320
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.56 E-value=0.00014 Score=68.90 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=61.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC-HHHHHHHHHHHHH-cCC-eEEEeeCcCCCch
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAWATYFAK-QGT-KVIFSNGQLGMGT 190 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~-~~~~~~w~~~l~~-~g~-~vi~iSa~~g~Gi 190 (383)
..++.+|++++|+|+.. .+.....+.+.+. +.|+++++||+|+.. ......+.+.+.+ .+. .++++|+++|.|+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 34688999999999976 5544444555554 789999999999987 5555555555544 343 6889999999999
Q ss_pred hhhhHHHHHh
Q 016762 191 MKLSRLAKAL 200 (383)
Q Consensus 191 ~~L~~~l~~l 200 (383)
.+|.+.+.+.
T Consensus 163 ~~l~~~i~~~ 172 (301)
T 1ega_A 163 DTIAAIVRKH 172 (301)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9887766543
No 321
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.55 E-value=0.0001 Score=76.39 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH-hcCCCeEEEEEccCCCCHHHH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW-LGNRKRILVLNREDMISMADR 165 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~-l~~k~~ilVlNK~DL~~~~~~ 165 (383)
..+.+||. ||| ..+..++...+..+|.++.|+|+..+....... +... ..+.|+++++||+|+.....
T Consensus 73 ~~inliDT--------PGh-~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~- 142 (600)
T 2ywe_A 73 YKLHLIDT--------PGH-VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADV- 142 (600)
T ss_dssp EEEEEECC--------CCS-GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-
T ss_pred EEEEEEEC--------CCc-HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCH-
Confidence 44556763 666 445666777889999999999998765433222 1112 24789999999999975321
Q ss_pred HHHHHHHHH-cCC---eEEEeeCcCCCchhhhhHHHHHh
Q 016762 166 NAWATYFAK-QGT---KVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 166 ~~w~~~l~~-~g~---~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
....+.+.+ .+. .++++|+++|.|+.+|.+.+.+.
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~ 181 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNR 181 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHh
Confidence 122222332 243 48999999999999887665443
No 322
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.55 E-value=3.2e-05 Score=71.73 Aligned_cols=109 Identities=18% Similarity=0.129 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHH-HHHh--hhcCeEEEEEecCCCCCCCcHHH-HHHh-cCCCeEEEEEccCCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKEL-KDQL--KLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMI 160 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l-~~~i--dr~DlILeV~DaR~p~~~~~~~l-~~~l-~~k~~ilVlNK~DL~ 160 (383)
.+.++.+||......- .+-+. .+.+ ...+ ..+|+|+.|+|+..... ...+ .++. .+.|+++|+||+|+.
T Consensus 50 ~~~~~~l~DtpG~~~~-~~~~~---~e~v~~~~~~~~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSL-GYSSI---DEKIARDYLLKGDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp TTEEEEEEECCCCSSC-CSSSH---HHHHHHHHHHHSCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CCeEEEEEECCCcCcc-CCCCH---HHHHHHHHHhhcCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCC
Confidence 3567889986433211 11111 1122 2333 68999999999976422 2222 2222 278999999999986
Q ss_pred CHHHHHH-HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 161 SMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 161 ~~~~~~~-w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
....... ........|..++++|+++|.|+.+|.+.+.+.
T Consensus 124 ~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 124 KKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp HHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHH
Confidence 5432111 112223457889999999999999987766554
No 323
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.55 E-value=9.7e-05 Score=75.60 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 161 (383)
+..+.+||. ||| ..+.......+..+|.+|.|+|+..+.......+...+ .+.|+++|+||+|+..
T Consensus 81 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 81 DYLINLLDT--------PGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp TEEEEEECC--------CCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred CEEEEEEEC--------CCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 456778884 444 34455667789999999999999887655444443333 3789999999999974
No 324
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.53 E-value=0.00014 Score=71.53 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCC-H
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS-M 162 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~-~ 162 (383)
+..+.+||. ||| ..+.+.+...+..+|+++.|+|+..+......+...++ .+.| +++++||+|+.+ .
T Consensus 65 ~~~~~iiDt--------pG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 135 (397)
T 1d2e_A 65 ARHYAHTDC--------PGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS 135 (397)
T ss_dssp SCEEEEEEC--------SSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH
T ss_pred CeEEEEEEC--------CCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH
Confidence 456777773 777 45666777778999999999999876543222222222 2567 579999999985 3
Q ss_pred HHH----HHHHHHHHHcC-----CeEEEeeCcCCCc
Q 016762 163 ADR----NAWATYFAKQG-----TKVIFSNGQLGMG 189 (383)
Q Consensus 163 ~~~----~~w~~~l~~~g-----~~vi~iSa~~g~G 189 (383)
+.. .+..+++...+ ..++++|+++|.+
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 136 EMVELVELEIRELLTEFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhccc
Confidence 221 22333454444 4688999988653
No 325
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.50 E-value=4.7e-05 Score=83.76 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=36.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCc----c-----------ccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRM----C-----------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~----~-----------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i 273 (383)
..++|+++|.+|+|||||+|+|++... . ..+...|+|.+...+.+ +..+.++||||..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 457899999999999999999986310 0 11235677776533333 3578999999974
No 326
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.50 E-value=0.00026 Score=69.16 Aligned_cols=105 Identities=16% Similarity=0.075 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCe-EEEEE-ccCCCCH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKR-ILVLN-REDMISM 162 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~-ilVlN-K~DL~~~ 162 (383)
+..+.+||. ||| +++.+.+...+..+|+++.|+| .........+...++ .+.|. ++++| |+|+ +.
T Consensus 59 ~~~i~iiDt--------PGh-~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~ 127 (370)
T 2elf_A 59 GRNMVFVDA--------HSY-PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM 127 (370)
T ss_dssp SSEEEEEEC--------TTT-TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH
T ss_pred CeEEEEEEC--------CCh-HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH
Confidence 345677774 565 4456666677899999999999 543322112221211 25677 99999 9999 65
Q ss_pred HHHHH----HHHHHHHcC---CeEEE--eeCcC---CCchhhhhHHHHHhhh
Q 016762 163 ADRNA----WATYFAKQG---TKVIF--SNGQL---GMGTMKLSRLAKALAS 202 (383)
Q Consensus 163 ~~~~~----w~~~l~~~g---~~vi~--iSa~~---g~Gi~~L~~~l~~l~~ 202 (383)
+.... ..+++.+.+ ..+++ +|+++ |.|+.+|.+.+.++..
T Consensus 128 ~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 128 HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 43322 222232222 57899 99999 9999998777665543
No 327
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.49 E-value=0.00014 Score=73.28 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCC--------CCCcHHHHHH-hcCCC-eEEEEEccCCCC----HHH----H
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPL--------STTHPLMDQW-LGNRK-RILVLNREDMIS----MAD----R 165 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~--------~~~~~~l~~~-l~~k~-~ilVlNK~DL~~----~~~----~ 165 (383)
||| ..+.+.+...+..+|++|+|+|+..+. ......+... ..+.| +++++||+|+.+ .+. .
T Consensus 129 PGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~ 207 (467)
T 1r5b_A 129 PGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECV 207 (467)
T ss_dssp CC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHH
T ss_pred CCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHH
Confidence 777 556666777789999999999998763 1111112221 12555 899999999964 221 1
Q ss_pred HHHHHHHHHc-C------CeEEEeeCcCCCchhhh
Q 016762 166 NAWATYFAKQ-G------TKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 166 ~~w~~~l~~~-g------~~vi~iSa~~g~Gi~~L 193 (383)
.+..+++... | ..++++|+++|.|+.++
T Consensus 208 ~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 208 DKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp HHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred HHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 2233444444 3 34788999999998764
No 328
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.48 E-value=7e-05 Score=71.07 Aligned_cols=58 Identities=29% Similarity=0.377 Sum_probs=29.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcCCccccCCCCC------ceeEEE--EEEe-----CCcEEEEecCccc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG------VTRVLK--WVRF-----GKDLEFLDSPGII 273 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg------tT~~~~--~~~~-----~~~i~l~DTpG~i 273 (383)
..++|+++|-+|||||||+|+|.+.+....+..++ .|.... .+.. ...+.+.||||+-
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 45789999999999999999998753222221110 121111 1111 2357899999994
No 329
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.48 E-value=0.00012 Score=64.18 Aligned_cols=106 Identities=8% Similarity=-0.028 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEE
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLN 155 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-----~~k~~ilVlN 155 (383)
....+.+||.... ..........+..+|++++|+|+.++.+.... ++.... .+.|+++|+|
T Consensus 55 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 125 (207)
T 1vg8_A 55 RLVTMQIWDTAGQ---------ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125 (207)
T ss_dssp CEEEEEEEEECSS---------GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred EEEEEEEEeCCCc---------HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 3456788884332 11122223457889999999999765432221 111222 3679999999
Q ss_pred ccCCCCHHH-HHHHHHHHH-HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 156 REDMISMAD-RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 156 K~DL~~~~~-~~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
|+|+..... ......+.. ..+..++.+|+++|.|+.++.+.+.+.
T Consensus 126 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 126 KIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172 (207)
T ss_dssp CTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 999974321 122222233 345778999999999999887665443
No 330
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.48 E-value=9.7e-05 Score=64.90 Aligned_cols=106 Identities=9% Similarity=-0.121 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED 158 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D 158 (383)
....+.+||..... .........+..+|+++.|+|+.++.+..... +..+. .+.|+++|+||+|
T Consensus 70 ~~~~~~l~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 140 (201)
T 3oes_A 70 DEFHLHLVDTAGQD---------EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140 (201)
T ss_dssp -CEEEEEEEECCCC---------TTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTT
T ss_pred EEEEEEEEECCCcc---------chHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 45667888854321 11112234678899999999998654332211 12221 1579999999999
Q ss_pred CCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 159 L~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
+.+.... ..........+..++.+|+++|.|+.++.+.+.+.
T Consensus 141 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (201)
T 3oes_A 141 LSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE 184 (201)
T ss_dssp CGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9744321 11222334557889999999999998886655443
No 331
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.47 E-value=5.2e-05 Score=80.11 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=34.8
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-----cc------CC------CCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v------~~------~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
..+|+|+|.+|+|||||+|+|+..... .+ .+ ..|+|.......+ +..+.|+||||...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 467999999999999999999832110 11 11 4466655433222 45689999999864
No 332
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.46 E-value=9.5e-05 Score=62.90 Aligned_cols=76 Identities=22% Similarity=0.218 Sum_probs=50.4
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHH----HHHHHHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMA----DRNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L 193 (383)
..+|+++.|+|+...... ...+..+. .+.|+++|.||+|+.... +...|. ...+..++++|+++|.|+.++
T Consensus 80 ~~~~~~i~v~D~~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 80 EKPDLVVNIVDATALERN-LYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KILGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp HCCSEEEEEEETTCHHHH-HHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHHTSCEEECBGGGTBSHHHH
T ss_pred CCCCEEEEEecCCchhHh-HHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH---HHhCCCEEEEEcCCCCCHHHH
Confidence 479999999998752110 01111221 378999999999985432 123332 334678899999999999988
Q ss_pred hHHHH
Q 016762 194 SRLAK 198 (383)
Q Consensus 194 ~~~l~ 198 (383)
.+.+.
T Consensus 156 ~~~l~ 160 (165)
T 2wji_A 156 KKAIS 160 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 333
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.46 E-value=2.2e-05 Score=73.47 Aligned_cols=78 Identities=23% Similarity=0.120 Sum_probs=54.3
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH----HHHHHHHHHHcCCeEEEeeCcCCCchh
Q 016762 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLGMGTM 191 (383)
Q Consensus 118 idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~----~~~w~~~l~~~g~~vi~iSa~~g~Gi~ 191 (383)
.+.+|+++.|+|+.... ....+...+ .+.|+++|+||+|+.+... ...+ ....|..++++|+++|.|+.
T Consensus 83 ~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l---~~~lg~~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 83 SGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDAL---SARLGCPVIPLVSTRGRGIE 157 (274)
T ss_dssp HTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHH---HHHHTSCEEECCCGGGHHHH
T ss_pred hcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH---HHhcCCCEEEEEcCCCCCHH
Confidence 47999999999997632 222222222 2789999999999875432 2222 23457889999999999998
Q ss_pred hhhHHHHHh
Q 016762 192 KLSRLAKAL 200 (383)
Q Consensus 192 ~L~~~l~~l 200 (383)
+|.+.+.+.
T Consensus 158 el~~~i~~~ 166 (274)
T 3i8s_A 158 ALKLAIDRY 166 (274)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 887665443
No 334
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.46 E-value=4.8e-05 Score=72.03 Aligned_cols=86 Identities=17% Similarity=0.021 Sum_probs=56.9
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCCCCHHH--------------HHHHHHHHH
Q 016762 114 LKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFA 173 (383)
Q Consensus 114 l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~DL~~~~~--------------~~~w~~~l~ 173 (383)
....+..+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+.+... .....++..
T Consensus 220 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 220 RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence 34568899999999999765443221 1222223789999999999965321 111222333
Q ss_pred HcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762 174 KQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 174 ~~g~-~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
..+. .++.+|+++|.|+.++.+.+.+
T Consensus 300 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 300 EIGAVKYLECSALTQRGLKTVFDEAIR 326 (332)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HcCCcEEEEecCCCCcCHHHHHHHHHH
Confidence 4554 7899999999999988666543
No 335
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.42 E-value=7.3e-05 Score=74.29 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=33.9
Q ss_pred CCceEEeEeecCCCChhHHHHhhhcCCccccC------CCCCceeEEEEEE-------eCCcEEEEecCcccc
Q 016762 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA------PRPGVTRVLKWVR-------FGKDLEFLDSPGIIP 274 (383)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~------~~pgtT~~~~~~~-------~~~~i~l~DTpG~i~ 274 (383)
+..++|+|||-+|||||||+|.|+|......+ +.+.++. ...+. ....+.+.||||+-.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~-~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ-VEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE-EEEEECC------CEEEEEEECC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee-eeeEEEEEecCCcccceeeeechhhhh
Confidence 34578999999999999999999986532121 0111221 11111 112578999999964
No 336
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.41 E-value=0.00047 Score=75.97 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=63.9
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHH-H----HHHHHHHHH
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMAD-R----NAWATYFAK 174 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~-~----~~w~~~l~~ 174 (383)
.||| ..+.+.+...+..+|++|+|+|+..+......+....+ .+.| +++++||+|+.+..+ . .+..+++..
T Consensus 366 TPGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~ 444 (1289)
T 3avx_A 366 CPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ 444 (1289)
T ss_dssp CCCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence 3887 45667777778999999999999987654433322222 2667 689999999985321 1 223334544
Q ss_pred cC-----CeEEEeeCcCC--------CchhhhhHHHHH
Q 016762 175 QG-----TKVIFSNGQLG--------MGTMKLSRLAKA 199 (383)
Q Consensus 175 ~g-----~~vi~iSa~~g--------~Gi~~L~~~l~~ 199 (383)
.| ..++++|+++| .|+.+|.+.+.+
T Consensus 445 ~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 445 YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 44 46899999998 456666555544
No 337
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.38 E-value=6.5e-05 Score=75.52 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------CcHH-HHHH-hcCCC-eEEEEEc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPL-MDQW-LGNRK-RILVLNR 156 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-------~~~~-l~~~-l~~k~-~ilVlNK 156 (383)
+..+.+||. ||| +.+.+.+...+..+|++|+|+|+..+... ...+ +... ..+.| +++|+||
T Consensus 84 ~~~~~iiDt--------PGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK 154 (458)
T 1f60_A 84 KYQVTVIDA--------PGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 154 (458)
T ss_dssp SEEEEEEEC--------CCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CceEEEEEC--------CCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 446778884 555 45666667778999999999999864211 1111 1111 12444 8899999
Q ss_pred cCCCC--HHHH----HHHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762 157 EDMIS--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 157 ~DL~~--~~~~----~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L 193 (383)
+|+.+ .+.. ....+++...| ..++++|+++|.|+.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 99983 3322 22333444444 46899999999998644
No 338
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.37 E-value=4.7e-05 Score=70.28 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.8
Q ss_pred CceEEeEeecC---------CCChhHHHHhhhcC
Q 016762 216 RAVRAGIVGYP---------NVGKSSLINRLLKR 240 (383)
Q Consensus 216 ~~~~v~lvG~p---------NvGKSTLiN~L~~~ 240 (383)
..++|++||.+ |||||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 45899999999 99999999999974
No 339
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.37 E-value=4.5e-05 Score=65.99 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=63.0
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM 159 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~DL 159 (383)
....+.+||.... ..........+..+|++++|+|+.++.+..+. ++.....+.|+++|.||+|+
T Consensus 53 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 123 (184)
T 1m7b_A 53 QRIELSLWDTSGS---------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123 (184)
T ss_dssp CEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEEEECCCC---------hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchh
Confidence 3456788884322 11122223467899999999999765433221 12222237899999999999
Q ss_pred CCHHH--------------HHHHHHHHHHcC-CeEEEeeCc-CCCchhhhhHHHHH
Q 016762 160 ISMAD--------------RNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKA 199 (383)
Q Consensus 160 ~~~~~--------------~~~w~~~l~~~g-~~vi~iSa~-~g~Gi~~L~~~l~~ 199 (383)
.+... .....++..+.+ ..++.+|++ .|.|+.++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 179 (184)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred hcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHH
Confidence 74210 111112233345 578899998 68888887665543
No 340
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.36 E-value=9e-05 Score=75.27 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=24.1
Q ss_pred CceEEeEeecCCCChhHHHHhhh------cCCccccC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLL------KRRMCPAA 246 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~------~~~~~~v~ 246 (383)
.+..|+++|.|||||||++|.|. |++++.++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35679999999999999999998 66554443
No 341
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.36 E-value=5.9e-05 Score=67.03 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=63.8
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccC
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNRED 158 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~D 158 (383)
.....+.+||.... .+........+..+|++++|+|+.++.+..+. ++.....+.|+++|.||+|
T Consensus 73 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 143 (205)
T 1gwn_A 73 TQRIELSLWDTSGS---------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143 (205)
T ss_dssp SSEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred CEEEEEEEEeCCCc---------HhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechh
Confidence 34466788885332 11122223467899999999999865433221 1222223689999999999
Q ss_pred CCCHHH--------------HHHHHHHHHHcC-CeEEEeeCc-CCCchhhhhHHHHH
Q 016762 159 MISMAD--------------RNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~--------------~~~w~~~l~~~g-~~vi~iSa~-~g~Gi~~L~~~l~~ 199 (383)
+.+... .....++..+.+ ..++.+|++ .|.|+.++.+.+.+
T Consensus 144 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred hccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHH
Confidence 974210 111112233445 578899998 68889888665543
No 342
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.35 E-value=0.00056 Score=62.53 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-H----HH--HhcCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQ--WLGNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l----~~--~l~~k~~ilVlNK~DL 159 (383)
+.+++++|..-.- -+.....+...+.+.+.. ++|+.++|+.......... . .. ...+.|.++|+||+|+
T Consensus 108 ~~d~iiiDtpG~~---~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 108 ENDYVLIDTPGQM---ETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183 (262)
T ss_dssp HCSEEEEECCSSH---HHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred cCCEEEEeCCCcc---chhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccc
Confidence 4699999964331 000011113334445566 8999999987543332211 0 01 1126899999999999
Q ss_pred CCHHHH---HHHHH-------H------------------HHHcC--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 160 ISMADR---NAWAT-------Y------------------FAKQG--TKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 160 ~~~~~~---~~w~~-------~------------------l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
.+..+. ..+.+ . ....+ ..++++|+++|.|+.+|.+.+.+..
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 876532 22211 1 12223 3688999999999999877766544
No 343
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.35 E-value=0.00013 Score=74.61 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=63.8
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH----HhcCCCeEEEEEccCCCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ----WLGNRKRILVLNREDMIS 161 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~----~l~~k~~ilVlNK~DL~~ 161 (383)
.+..+.+||...... +.......+..+|+++.|+|+... .....+.. ...+.|+++|+||+|+.+
T Consensus 96 ~~~~~~i~Dt~G~e~---------~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 96 KECLFHFWDFGGQEI---------MHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp TTCEEEEECCCSCCT---------TTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred ceEEEEEEECCcHHH---------HHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 467788998654211 111222457789999999999754 11122222 223589999999999976
Q ss_pred HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
... .....+.+...+..++.+|+++|.|+.+|.+.+.+..
T Consensus 165 ~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 165 SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp TCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 432 2333344555677799999999999999877665543
No 344
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.33 E-value=7e-05 Score=74.52 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHH-HcCCeEEEeeCcCCC
Q 016762 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGM 188 (383)
Q Consensus 112 ~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~-~~g~~vi~iSa~~g~ 188 (383)
+.....+..+|++|+|+|+ ........+...+ .+.|+++|+||+|+.+.... ...+.+. ..+..++++|+++|.
T Consensus 105 ~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKK 181 (423)
T ss_dssp HHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred HHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 3355678899999999998 2222222333332 27899999999999865433 1222222 345678899999999
Q ss_pred chhhhhHHHHHhh
Q 016762 189 GTMKLSRLAKALA 201 (383)
Q Consensus 189 Gi~~L~~~l~~l~ 201 (383)
|+.++.+.+.+..
T Consensus 182 gI~eL~~~L~~~l 194 (423)
T 3qq5_A 182 GFDDIGKTISEIL 194 (423)
T ss_dssp STTTHHHHHHHHS
T ss_pred CHHHHHHHHHHhh
Confidence 9999877766554
No 345
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.32 E-value=0.00036 Score=65.21 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHh--hhcCeEEEEEecCCCCCCCcHHHHH-Hh-cCCCeEEEEEccCCCCH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISM 162 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~i--dr~DlILeV~DaR~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~ 162 (383)
+.++.+||...... ..+.... +......+ ..+|+++.|+|+.... ....+.. +. .+.|+++|+||+|+...
T Consensus 48 ~~~l~l~DtpG~~~-~~~~~~~--e~v~~~~~~~~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~ 122 (272)
T 3b1v_A 48 NKDLEIQDLPGIYS-MSPYSPE--AKVARDYLLSQRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDG 122 (272)
T ss_dssp CTTEEEEECCCCSC-SSCSSHH--HHHHHHHHHTTCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHH
T ss_pred CCeEEEEECCCcCc-cCCCChH--HHHHHHHHhcCCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCc
Confidence 67889999543211 0111111 11122334 3699999999987531 1222222 22 37899999999998643
Q ss_pred H----HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 163 A----DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 163 ~----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
. ....+. ...|..++++|+++|.|+.+|.+.+.+.
T Consensus 123 ~~~~~~~~~l~---~~lg~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 123 QGKKINVDKLS---YHLGVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp TTCCCCHHHHH---HHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred CCcHHHHHHHH---HHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 2 223332 2347789999999999999887766443
No 346
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00012 Score=65.57 Aligned_cols=104 Identities=10% Similarity=-0.033 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~ 160 (383)
...+.+||..-. ..........+..+|++++|+|+..+.+..... +..+. .+.|+++|+||+|+.
T Consensus 61 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQ---------ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTT---------TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEEEEECCCc---------cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 356778885332 112222335678999999999987654432211 11111 267899999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
.... ......+....+..++++|+++|.|+.++.+.+.+
T Consensus 132 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 172 (223)
T 3cpj_B 132 HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELIN 172 (223)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5321 12222334456778899999999999988765543
No 347
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.32 E-value=0.00018 Score=62.46 Aligned_cols=104 Identities=10% Similarity=-0.042 Sum_probs=64.3
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEEE
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLN 155 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l----~~k~~ilVlN 155 (383)
.....+.+||..... +... +...+..+|.++.|+|..++.+..+.. +.... .+.|+++|+|
T Consensus 66 ~~~~~l~i~Dt~G~~---------~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 66 HQPVHLRVMDTADLD---------TPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp TEEEEEEEEECCC------------CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred CEEEEEEEEECCCCC---------cchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence 344567788853321 1111 235778899999999998654332211 11111 3689999999
Q ss_pred ccCCCCHHH--HHHHHHHHHHcCCeEEEeeC-cCCCchhhhhHHHH
Q 016762 156 REDMISMAD--RNAWATYFAKQGTKVIFSNG-QLGMGTMKLSRLAK 198 (383)
Q Consensus 156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa-~~g~Gi~~L~~~l~ 198 (383)
|+|+..... .....++..+.+..++.+|+ ++|.|+.++.+.+.
T Consensus 136 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~ 181 (187)
T 3c5c_A 136 KLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181 (187)
T ss_dssp CGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHH
T ss_pred CcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHH
Confidence 999964321 12222334455788999999 89999988865543
No 348
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.32 E-value=8.3e-05 Score=77.15 Aligned_cols=57 Identities=26% Similarity=0.382 Sum_probs=29.3
Q ss_pred eEEeEeecCCCChhHHHHhhhcCCccc--------------cCCCCCceeEEEEEEe------C--CcEEEEecCcccc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF------G--KDLEFLDSPGIIP 274 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~--------------v~~~pgtT~~~~~~~~------~--~~i~l~DTpG~i~ 274 (383)
.+|+|+|.+|+|||||+|+|+...... .+...|.|...+...+ + ..+.|+||||...
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 479999999999999999998532111 1113566765433322 1 3577999999864
No 349
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.31 E-value=0.00011 Score=68.20 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=54.6
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHH-HHh-cC-CCeEEEEEccCCCCHHHHHH-HHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GN-RKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLS 194 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~-~~l-~~-k~~ilVlNK~DL~~~~~~~~-w~~~l~~~g~~vi~iSa~~g~Gi~~L~ 194 (383)
..+|+++.|+|+..+. .+..+. ++. .+ .|+++|+||+|+.+...... .....+..|..++++|++.|.|+.++.
T Consensus 80 ~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred cCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence 7899999999998642 122211 121 24 89999999999875432111 111223457889999999999999987
Q ss_pred HHHHHhh
Q 016762 195 RLAKALA 201 (383)
Q Consensus 195 ~~l~~l~ 201 (383)
+.+.++.
T Consensus 158 ~~i~~~~ 164 (271)
T 3k53_A 158 RMIALMA 164 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766553
No 350
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.31 E-value=6.5e-05 Score=77.90 Aligned_cols=58 Identities=29% Similarity=0.435 Sum_probs=32.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCccc--------------cCCCCCceeEEEEEEe------C--CcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF------G--KDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~--------------v~~~pgtT~~~~~~~~------~--~~i~l~DTpG~i~ 274 (383)
..+|+++|.+|+|||||+|+|+...... .+...|.|...+...+ + ..+.|+||||...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 3479999999999999999997532111 1112455654321111 1 2467999999974
No 351
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.28 E-value=0.00012 Score=79.11 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.9
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
..+|+|+|.+|+|||||+|+|++..
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~ 43 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRA 43 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998653
No 352
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.28 E-value=0.00054 Score=64.97 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=59.7
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHH-HHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHH---hcCCCeEEEEEcc
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKT-EKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQW---LGNRKRILVLNRE 157 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~-~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~---l~~k~~ilVlNK~ 157 (383)
+..+.+||... | ...+.+. .......+..+|+++.|+|+.++.+..+.. +..+ ..+.|+++|+||+
T Consensus 51 ~~~l~i~Dt~G---~--~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~ 125 (307)
T 3r7w_A 51 NMTLNLWDCGG---Q--DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKM 125 (307)
T ss_dssp TEEEEEEEECC---S--HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred ceEEEEEECCC---c--HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence 46678888432 2 0001111 223346679999999999998765544331 2222 1278999999999
Q ss_pred CCCCHHHHH--------HHHHHHHHcC---CeEEEeeCcCCCchhh
Q 016762 158 DMISMADRN--------AWATYFAKQG---TKVIFSNGQLGMGTMK 192 (383)
Q Consensus 158 DL~~~~~~~--------~w~~~l~~~g---~~vi~iSa~~g~Gi~~ 192 (383)
|+...+... ...+.....| ..++.+|++. .|+.+
T Consensus 126 Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e 170 (307)
T 3r7w_A 126 DLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYK 170 (307)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHH
Confidence 999843322 1222233445 5788899988 44443
No 353
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.27 E-value=0.00012 Score=75.84 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=64.6
Q ss_pred cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH---
Q 016762 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--- 163 (383)
Q Consensus 89 ~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--- 163 (383)
.+.+||. ||| ..+.......+..+|+++.|+|+.++......+....+ .+.|+++++||+|+.+..
T Consensus 71 ~i~liDT--------PGh-e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~ 141 (594)
T 1g7s_A 71 GLFFIDT--------PGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH 141 (594)
T ss_dssp EEEEECC--------CTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC
T ss_pred CEEEEEC--------CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc
Confidence 4778884 343 11222222346779999999999886443222222222 378999999999997421
Q ss_pred --------------H--------HHHHHHHHHHcC---------------CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 164 --------------D--------RNAWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 164 --------------~--------~~~w~~~l~~~g---------------~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
. .....+.+...| ..++++|+++|.|+.+|.+.+..+.
T Consensus 142 ~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 0 112223333333 2578899999999999987776554
No 354
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.27 E-value=0.00022 Score=75.48 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=38.9
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-----------ccCC------CCCceeEEEEEEe---C-------CcEEEEec
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---G-------KDLEFLDS 269 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----------~v~~------~pgtT~~~~~~~~---~-------~~i~l~DT 269 (383)
..+|+|+|.+|+|||||+|+|+..... .+.+ ..|.|.......+ + ..+.|+||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 457999999999999999999743111 0111 3466665433222 2 56889999
Q ss_pred Ccccc
Q 016762 270 PGIIP 274 (383)
Q Consensus 270 pG~i~ 274 (383)
||...
T Consensus 90 PG~~d 94 (704)
T 2rdo_7 90 PGHVD 94 (704)
T ss_pred CCccc
Confidence 99864
No 355
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.23 E-value=0.00056 Score=67.85 Aligned_cols=86 Identities=26% Similarity=0.324 Sum_probs=61.0
Q ss_pred HHhhhcCeEEEEEecC-CCCCCCc---HHHHHH---hcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCC
Q 016762 116 DQLKLMDVVIEVRDAR-IPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (383)
Q Consensus 116 ~~idr~DlILeV~DaR-~p~~~~~---~~l~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~ 188 (383)
+.+++++.+|+++|+. .+..... .++..+ +..+|.++|+||+|+........+.+.+...+..++++|++++.
T Consensus 231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 4578999999999985 2221111 122222 23689999999999988755555656666667789999999999
Q ss_pred chhhhhHHHHHhh
Q 016762 189 GTMKLSRLAKALA 201 (383)
Q Consensus 189 Gi~~L~~~l~~l~ 201 (383)
|+.+|.+.+.++.
T Consensus 311 gi~eL~~~i~~~l 323 (416)
T 1udx_A 311 GLPALKEALHALV 323 (416)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999877665544
No 356
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.22 E-value=0.00083 Score=65.41 Aligned_cols=91 Identities=15% Similarity=0.018 Sum_probs=58.3
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcHHH---HHH---h--cCCCeEEEEEccCCCCHHHH--HHHHH-HHHHc-C--C
Q 016762 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLM---DQW---L--GNRKRILVLNREDMISMADR--NAWAT-YFAKQ-G--T 177 (383)
Q Consensus 112 ~~l~~~idr~DlILeV~DaR~p~~~~~~~l---~~~---l--~~k~~ilVlNK~DL~~~~~~--~~w~~-~l~~~-g--~ 177 (383)
+.+.+.+..+|++++|+|+..+......++ ... + .++|+++|.||+|+.+.... ..... ..+.. . .
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 344456899999999999876541111111 111 2 36899999999999864311 11111 11233 2 3
Q ss_pred eEEEeeCcCCCchhhhhHHHHHhhh
Q 016762 178 KVIFSNGQLGMGTMKLSRLAKALAS 202 (383)
Q Consensus 178 ~vi~iSa~~g~Gi~~L~~~l~~l~~ 202 (383)
.++++|+++|.|+.+|.+.+.++..
T Consensus 329 ~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHHHhc
Confidence 5788999999999999888776543
No 357
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.21 E-value=5e-05 Score=69.71 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.4
Q ss_pred ceEEeEeecCCCChhHHHHhhh-----cCCccccCCCCC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRPG 250 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~-----~~~~~~v~~~pg 250 (383)
...+.++|.+||||||++|.|. +++.+.+..-|+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4568999999999999999998 666555554443
No 358
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.15 E-value=0.00076 Score=60.38 Aligned_cols=107 Identities=13% Similarity=0.001 Sum_probs=62.8
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcH-HH-HHHh-----cCCCeEEEEE
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLN 155 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~idr~DlILeV~DaR~p~~~~~~-~l-~~~l-----~~k~~ilVlN 155 (383)
......+++||..-+..| .+.+. .....+|.++.|+|..++.+..+. .+ ..+. .+.|+++|.|
T Consensus 83 ~~~~~~l~~~Dt~g~~~~---------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgN 153 (211)
T 2g3y_A 83 DGESATIILLDMWENKGE---------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 153 (211)
T ss_dssp TTEEEEEEEECCTTTTHH---------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred CCeeeEEEEeecCCCcch---------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 334456678885322111 12222 235678999999998764333221 11 1121 2579999999
Q ss_pred ccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 156 REDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
|+||..... ......+....+..++++|+++|.|+.++.+.+.+
T Consensus 154 K~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~ 199 (211)
T 2g3y_A 154 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199 (211)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred ChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999964321 11111222344678889999999999988665543
No 359
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.14 E-value=0.0013 Score=61.00 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=45.8
Q ss_pred cCeEEEEEec-CCCCCCCcHHHHHHhc-CCCeEEEEEccCCCCHHHHHHH----HHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762 121 MDVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLS 194 (383)
Q Consensus 121 ~DlILeV~Da-R~p~~~~~~~l~~~l~-~k~~ilVlNK~DL~~~~~~~~w----~~~l~~~g~~vi~iSa~~g~Gi~~L~ 194 (383)
+|+++++++. +.+....+.++.+.+. +.|+++|+||+|+.+..+.... .+.+...+..++.+|+..+.|+.++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 7788888854 3345555555545444 7899999999999987665433 34455567778889999999988876
Q ss_pred HHHHH
Q 016762 195 RLAKA 199 (383)
Q Consensus 195 ~~l~~ 199 (383)
+.+.+
T Consensus 196 ~~l~~ 200 (274)
T 3t5d_A 196 KKIKD 200 (274)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
No 360
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.14 E-value=1.2e-05 Score=82.45 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=72.9
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH--HHHHHHHHH----HHcC--CeEEEeeCc
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYF----AKQG--TKVIFSNGQ 185 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~w~~~l----~~~g--~~vi~iSa~ 185 (383)
..+..+|++++|+|+.++......+....+ .+.|+++++||+|+.... ........+ ...+ ..++++|++
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 456889999999999886554433333322 368999999999997432 111111111 0111 357789999
Q ss_pred CCCchhhhhHHHHHhhhhhhhhhhcc------------CCCCCceEEeEeecCCCChhHHH
Q 016762 186 LGMGTMKLSRLAKALASDVNVKRRSK------------GLLPRAVRAGIVGYPNVGKSSLI 234 (383)
Q Consensus 186 ~g~Gi~~L~~~l~~l~~~~~~~~~~~------------~~~~~~~~v~lvG~pNvGKSTLi 234 (383)
+|.|+.+|.+.+..+........... ......+..++|+..+++|++.+
T Consensus 151 tG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 151 TGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp SSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred CCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 99999999877766543221111000 00112456788888899988865
No 361
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.13 E-value=0.0002 Score=62.05 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC-cH--HHHHHh---cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT-HP--LMDQWL---GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~-~~--~l~~~l---~~k~~ilVlNK~DL~ 160 (383)
...+.+||. +|+ .+........+..+|+++.|+|..++..+. .. .+..+. .+.|+++|.||+|+.
T Consensus 55 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 55 DLVLNVWDF--------AGR-EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp -CEEEEEEE--------CSH-HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred ceEEEEEec--------CCC-HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 456778874 222 333333345678899999999987653221 11 122211 367899999999998
Q ss_pred CHHHHH----HHHHHHH-HcCCe----EEEeeCcCCC-chhhhhHHHHH
Q 016762 161 SMADRN----AWATYFA-KQGTK----VIFSNGQLGM-GTMKLSRLAKA 199 (383)
Q Consensus 161 ~~~~~~----~w~~~l~-~~g~~----vi~iSa~~g~-Gi~~L~~~l~~ 199 (383)
...... ...+.+. ..+.. ++++|+++|. |+.+|.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~ 174 (184)
T 2zej_A 126 DEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIIN 174 (184)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHH
Confidence 765432 1222222 23443 7889999996 88877665543
No 362
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.10 E-value=0.00034 Score=60.27 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=51.6
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHH----HHHHHHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMA----DRNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L 193 (383)
..+|+++.|+|+.... .....+..+. .+.|+++|.||+|+.... ....+. ...+..++++|++.|.|+.++
T Consensus 84 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE-RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KILGVKVVPLSAAKKMGIEEL 159 (188)
T ss_dssp HCCSEEEEEEEGGGHH-HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHHTSCEEECBGGGTBSHHHH
T ss_pred cCCCEEEEEecchhHH-HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH---HHhCCCeEEEEecCCCCHHHH
Confidence 4599999999986411 0001112222 268999999999986432 223332 334678999999999999988
Q ss_pred hHHHHHhh
Q 016762 194 SRLAKALA 201 (383)
Q Consensus 194 ~~~l~~l~ 201 (383)
.+.+.+..
T Consensus 160 ~~~i~~~~ 167 (188)
T 2wjg_A 160 KKAISIAV 167 (188)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665443
No 363
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.06 E-value=0.00056 Score=63.86 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCcCCC---chHH-HHHHHHHHHHhhhcCeE-EEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQWY---PGHI-AKTEKELKDQLKLMDVV-IEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~---Pgh~-~~~~~~l~~~idr~DlI-LeV~DaR~p~~~~~~-~l~~~l~--~k~~ilVlNK~D 158 (383)
..++.+||...-...-. +... ......+..++..++.+ |.|+|+..+....+. .+...+. +.|.++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 36889999653211000 1111 13445556778888755 479999876555443 3444443 679999999999
Q ss_pred CCCHHH-HHHHHHH-HHHc--C-CeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMAD-RNAWATY-FAKQ--G-TKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~-~~~w~~~-l~~~--g-~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+... ...+.+. +... + ..++++|+++|.|+.+|.+.+.+
T Consensus 204 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 204 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp GSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred cCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 986543 2222111 0011 2 24667999999999988766554
No 364
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.04 E-value=4.5e-05 Score=79.18 Aligned_cols=87 Identities=14% Similarity=0.107 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCC-------CCCcHHHHHHh--cCCC-eEEEEEccCCCC--HHHHH----H
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQWL--GNRK-RILVLNREDMIS--MADRN----A 167 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-------~~~~~~l~~~l--~~k~-~ilVlNK~DL~~--~~~~~----~ 167 (383)
|||. .+.+.+...+..+|++|+|+|+..+. .....+...++ .+.| +|+|+||+|+.+ ..... .
T Consensus 263 PGh~-~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~e 341 (592)
T 3mca_A 263 PGHR-DFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNI 341 (592)
T ss_dssp ESSS-EEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHH
T ss_pred CChH-HHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHH
Confidence 6652 23333334567899999999998653 22222222221 2454 889999999976 33222 2
Q ss_pred HHHHH-HHcCC-----eEEEeeCcCCCchh
Q 016762 168 WATYF-AKQGT-----KVIFSNGQLGMGTM 191 (383)
Q Consensus 168 w~~~l-~~~g~-----~vi~iSa~~g~Gi~ 191 (383)
..+++ ...|. .++++|+++|.|+.
T Consensus 342 l~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 342 VSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 22333 33343 58899999999997
No 365
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.03 E-value=0.0014 Score=61.73 Aligned_cols=113 Identities=8% Similarity=-0.033 Sum_probs=64.1
Q ss_pred CCcEEEEcCCCCCcCC---Cc-hHHHHHHHHHHHHhhhcCeEEEEEec-CCCCCCCc-HHHHHHhc--CCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQW---YP-GHIAKTEKELKDQLKLMDVVIEVRDA-RIPLSTTH-PLMDQWLG--NRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw---~P-gh~~~~~~~l~~~idr~DlILeV~Da-R~p~~~~~-~~l~~~l~--~k~~ilVlNK~D 158 (383)
+.++++||...-.... -| +-...........+..+|++++|+|+ .......+ ..+...+. ++|.++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 4678899864321100 00 00123455566789999999999996 44444333 35555553 689999999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCeEEEee---CcC---CCchhhhhHHHHHhh
Q 016762 159 MISMADRNAWATYFAK----QGTKVIFSN---GQL---GMGTMKLSRLAKALA 201 (383)
Q Consensus 159 L~~~~~~~~w~~~l~~----~g~~vi~iS---a~~---g~Gi~~L~~~l~~l~ 201 (383)
+.+... .+.+.+.. .+..++.++ +.. +.|+.++.+.+.++.
T Consensus 210 l~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 210 LMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp SSCSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred cCCcch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 986543 11222222 113344444 444 566666655554443
No 366
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.00 E-value=0.0013 Score=63.36 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=62.0
Q ss_pred cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH
Q 016762 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD 164 (383)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~ 164 (383)
..+.+++++|...-. + .. . .+...+|+++.|+|+..+..... +.....+.|.++|+||+|+.....
T Consensus 146 ~~~~~i~liDTpG~~-~-----~~---~---~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~ 211 (341)
T 2p67_A 146 AAGYDVVIVETVGVG-Q-----SE---T---EVARMVDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTN 211 (341)
T ss_dssp HTTCSEEEEEEECCT-T-----HH---H---HHHTTCSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHH
T ss_pred ccCCCEEEEeCCCcc-c-----hH---H---HHHHhCCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHH
Confidence 457889999963211 1 11 1 24689999999999864422111 111112468899999999987644
Q ss_pred HHHHHHHHH----Hc-------CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 165 RNAWATYFA----KQ-------GTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 165 ~~~w~~~l~----~~-------g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
...+.+.++ .. ...++++|+++|.|+.+|.+.+.+.
T Consensus 212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 433322222 11 3467889999999999887776553
No 367
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.98 E-value=4.5e-05 Score=67.00 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=54.8
Q ss_pred CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc----CCCeEEEEEccCCCC
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG----NRKRILVLNREDMIS 161 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l~----~k~~ilVlNK~DL~~ 161 (383)
..+.+||..-.. .........+..+|++++|+|+.++.+..... +..+.. +.|+++|+||+|+.+
T Consensus 82 ~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 82 IKLQIWDTAGQE---------RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp EEEEEECCTTCT---------TCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred EEEEEEECCCcH---------hHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 467788754321 11122234678899999999998754322211 111211 578999999999975
Q ss_pred HHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 162 MADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 162 ~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
.... ..........+..++++|+++|.|+.++.+.+.
T Consensus 153 ~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp -CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 4321 111122334567788899999999888755543
No 368
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.93 E-value=0.00011 Score=65.38 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=38.8
Q ss_pred EEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEe-CCcEEEEecCcc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~ 272 (383)
.++|+|.+|||||||+|.|.+... ......+.|||....-.+ +.++.++|+..|
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEM 76 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHh
Confidence 589999999999999999997543 245667788887653222 345666666665
No 369
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.90 E-value=0.0035 Score=56.64 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=50.1
Q ss_pred CCcEEEEcCCCCCcCCCchH-----HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh------cCCCeEEEE
Q 016762 87 DADLYYWTKSLRPVQWYPGH-----IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL------GNRKRILVL 154 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh-----~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l------~~k~~ilVl 154 (383)
+..+.+||... .+.... .+.+.+.+......+|++|+|+|+.. ....... +..+. ..+|+++|+
T Consensus 77 ~~~i~liDTpG---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~ 152 (239)
T 3lxx_A 77 ETELVVVDTPG---IFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIF 152 (239)
T ss_dssp TEEEEEEECCS---CC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred CceEEEEECCC---ccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEE
Confidence 45678888542 111110 12333333344566799999999863 3332222 22221 135899999
Q ss_pred EccCCCCHHHHHH--------HHHHHHHcCCeEEEeeCcCC
Q 016762 155 NREDMISMADRNA--------WATYFAKQGTKVIFSNGQLG 187 (383)
Q Consensus 155 NK~DL~~~~~~~~--------w~~~l~~~g~~vi~iSa~~g 187 (383)
||+|+........ ..+...+.|..+.+++...+
T Consensus 153 nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~ 193 (239)
T 3lxx_A 153 TRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKAT 193 (239)
T ss_dssp ECGGGC------------CHHHHHHHHHHSSSEEECCTTCC
T ss_pred eCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCC
Confidence 9999987654432 22233455666777766543
No 370
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.84 E-value=0.0027 Score=61.32 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=61.5
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA 163 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~ 163 (383)
...+.+++++|...-. + + . ..+.+.+|+++.|+|+..+... ..+...+.+.+.++|+||+|+.+..
T Consensus 163 ~~~~~~~iliDT~Gi~-~--~-~--------~~l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 163 EGAGYDIILIETVGVG-Q--S-E--------FAVADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp HHTTCSEEEEECCCC-----C-H--------HHHHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHH
T ss_pred ccCCCCEEEEECCCcc-h--h-h--------hhHHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCch
Confidence 3467889999864321 1 1 0 2346789999999998754321 1122222357889999999998653
Q ss_pred HHH----HHHHHHHH-------cCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 164 DRN----AWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 164 ~~~----~w~~~l~~-------~g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
... .+...+.. .+..++++|+++|.|+.+|.+.+.++
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~ 276 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF 276 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 322 22121111 13467899999999999988777654
No 371
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.79 E-value=0.00092 Score=70.25 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=38.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcCCcc-----------ccCC------CCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----------~v~~------~pgtT~~~~~~~~---~~~i~l~DTpG~i~ 274 (383)
..+|+|+|.+|+|||||+|+|++.... .+.+ ..|.|...+...+ +..+.++||||...
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 457999999999999999999843211 0111 1245554443333 34678999999853
No 372
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.78 E-value=0.00093 Score=64.08 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=35.9
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--CCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--~~~i~l~DTpG~i~ 274 (383)
||.++|-.|||||||++.+.+..........+.|.......+ .-++.+.||+|--.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQEr 58 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLN 58 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchh
Confidence 478999999999999998875422111112334443322222 24689999999753
No 373
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.76 E-value=0.002 Score=68.09 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=66.3
Q ss_pred CcEEEEcCCCCCcCCCchHHHH--HHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHhc--CCCeEEEEEccCCCCH
Q 016762 88 ADLYYWTKSLRPVQWYPGHIAK--TEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWLG--NRKRILVLNREDMISM 162 (383)
Q Consensus 88 ~~~vi~~~~L~~~qw~Pgh~~~--~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l~--~k~~ilVlNK~DL~~~ 162 (383)
.++.+||. ||+... ....+...+..+|+||+|+|+..+.+..+.+ +...+. ++|+++|+||+|+...
T Consensus 174 ~~l~LiDT--------PGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDS--------PGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEEC--------CCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCeEEEEC--------CCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 46778884 443221 2344557889999999999998776654443 223333 6789999999999754
Q ss_pred H--------HHHH----HH----HHHHHc---------CCeEEEeeCc--------------CCCchhhhhHHHHH
Q 016762 163 A--------DRNA----WA----TYFAKQ---------GTKVIFSNGQ--------------LGMGTMKLSRLAKA 199 (383)
Q Consensus 163 ~--------~~~~----w~----~~l~~~---------g~~vi~iSa~--------------~g~Gi~~L~~~l~~ 199 (383)
. .... .. ..+... ...++++|++ .|.|+.+|.+.+.+
T Consensus 246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~ 321 (695)
T 2j69_A 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNT 321 (695)
T ss_dssp GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHH
T ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHH
Confidence 3 1111 11 112111 1358899999 89999988666544
No 374
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.72 E-value=0.0015 Score=69.37 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=61.4
Q ss_pred HHHHHHHHHh-hhcCeEEEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccCCCCHHHH-HHHHHH-HH--HcC-CeE
Q 016762 109 KTEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMADR-NAWATY-FA--KQG-TKV 179 (383)
Q Consensus 109 ~~~~~l~~~i-dr~DlILeV~DaR~p~~~~~~-~l~~~l~--~k~~ilVlNK~DL~~~~~~-~~w~~~-l~--~~g-~~v 179 (383)
.+.+.+.+++ ..+|+||.|+|++.+....+. .+...+. ++|.++|+||+|++++... ...... +. +.| ..+
T Consensus 175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~V 254 (772)
T 3zvr_A 175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 254 (772)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEEC
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCce
Confidence 3444445555 688999999999987777665 5666554 6899999999999976431 111110 00 012 356
Q ss_pred EEeeCcCCCchhhhhHHHHH
Q 016762 180 IFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 180 i~iSa~~g~Gi~~L~~~l~~ 199 (383)
+++|+++|.|+.+|.+.+.+
T Consensus 255 V~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 255 VNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCCCCEESSSSEEHHHHHHH
T ss_pred EEecccccccchhHHHHHHH
Confidence 78999999999888766554
No 375
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.71 E-value=0.00047 Score=68.72 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChhHHHHhhhc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (383)
+..|+++|.+||||||+.+.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999999975
No 376
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.67 E-value=0.0097 Score=51.97 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=57.7
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHH----HHHHHHHHcC--CeEEEeeCcCCCch
Q 016762 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN----AWATYFAKQG--TKVIFSNGQLGMGT 190 (383)
Q Consensus 119 dr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~----~w~~~l~~~g--~~vi~iSa~~g~Gi 190 (383)
..+|.++.++|+..+....+.++..++ .+.|.++|.||+|+.+..+.+ .....+.+.+ ..++++|++.+.|+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 578899999999876654443444443 368889999999999865432 2222233333 35678999999999
Q ss_pred hhhhHHHHHhh
Q 016762 191 MKLSRLAKALA 201 (383)
Q Consensus 191 ~~L~~~l~~l~ 201 (383)
.++.+.+.++.
T Consensus 187 ~~l~~~l~~~~ 197 (210)
T 1pui_A 187 DKLRQKLDTWF 197 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 377
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.66 E-value=0.002 Score=58.92 Aligned_cols=111 Identities=10% Similarity=-0.005 Sum_probs=61.6
Q ss_pred CCcEEEEcCCCCCcCCCchHH--HHHHHHHH----HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-c-------CCCeEE
Q 016762 87 DADLYYWTKSLRPVQWYPGHI--AKTEKELK----DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-G-------NRKRIL 152 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~--~~~~~~l~----~~idr~DlILeV~DaR~p~~~~~~~l~~~l-~-------~k~~il 152 (383)
+..+.+||... .+.++.. ....+.+. .....+|++|+|+|+.. ....+..+.+++ . +.|+++
T Consensus 69 ~~~i~liDTPG---~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iil 144 (247)
T 3lxw_A 69 KCHVEVVDTPD---IFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIV 144 (247)
T ss_dssp TEEEEEEECCS---CSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred CcEEEEEECCC---CCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEE
Confidence 55688998543 2222221 11223333 33499999999999863 333333322222 1 578999
Q ss_pred EEEccCCCCHHH---H-----HHHHHHHHHcCCeEEEeeCcC-----CCchhhhhHHHHHhh
Q 016762 153 VLNREDMISMAD---R-----NAWATYFAKQGTKVIFSNGQL-----GMGTMKLSRLAKALA 201 (383)
Q Consensus 153 VlNK~DL~~~~~---~-----~~w~~~l~~~g~~vi~iSa~~-----g~Gi~~L~~~l~~l~ 201 (383)
+.||+||..... + ..........|..+.+++... +.|+.+|.+.+.++.
T Consensus 145 v~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 145 FTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp EECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 999999975321 1 112233445566676666544 356666665555544
No 378
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.65 E-value=0.0034 Score=62.62 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=38.7
Q ss_pred eEEeEeecCCCChhHHHHhhhc-----------------CCccccCCC-CCceeEEE-EE---Ee----CC--cEEEEec
Q 016762 218 VRAGIVGYPNVGKSSLINRLLK-----------------RRMCPAAPR-PGVTRVLK-WV---RF----GK--DLEFLDS 269 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~-----------------~~~~~v~~~-pgtT~~~~-~~---~~----~~--~i~l~DT 269 (383)
.-|+|+|.+++|||+|+|.|++ .....+++. -.+|+.+- |. .+ +. .++|+||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4589999999999999997752 122333322 22566643 21 11 22 4899999
Q ss_pred CccccCCCC
Q 016762 270 PGIIPMRIS 278 (383)
Q Consensus 270 pG~i~~~~~ 278 (383)
.|+.....+
T Consensus 148 EG~~d~~~~ 156 (457)
T 4ido_A 148 QGTFDSQST 156 (457)
T ss_dssp CCBTCTTCC
T ss_pred cCCCCcccC
Confidence 999866443
No 379
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.51 E-value=0.0043 Score=54.05 Aligned_cols=82 Identities=13% Similarity=0.009 Sum_probs=52.0
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCC
Q 016762 117 QLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (383)
Q Consensus 117 ~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g 187 (383)
.+..+|.++.|+|..++.+..+.. +.... .+.|+++|.||+||..... ......+....+..++.+|+++|
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 456789999999987654332221 11111 2579999999999964321 11111112334567889999999
Q ss_pred CchhhhhHHHH
Q 016762 188 MGTMKLSRLAK 198 (383)
Q Consensus 188 ~Gi~~L~~~l~ 198 (383)
.|+.++.+.+.
T Consensus 157 ~~v~~lf~~l~ 167 (192)
T 2cjw_A 157 HNVKELFEGIV 167 (192)
T ss_dssp BSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99998865543
No 380
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.50 E-value=0.0028 Score=56.19 Aligned_cols=103 Identities=11% Similarity=-0.015 Sum_probs=63.1
Q ss_pred ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA 163 (383)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~ 163 (383)
...+.|++++|..-.. ..|+|.. -..+.++.|+|+..+.. .........+.|.++|+||+|+.+..
T Consensus 105 ~~~~~d~iiidt~G~~--~~~~~~~----------~~~~~~i~vvd~~~~~~--~~~~~~~~~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 105 KFSDCDLLLIENVGNL--ICPVDFD----------LGENYRVVMVSVTEGDD--VVEKHPEIFRVADLIVINKVALAEAV 170 (221)
T ss_dssp GGTTCSEEEEEEEEBS--SGGGGCC----------CSCSEEEEEEEGGGCTT--HHHHCHHHHHTCSEEEEECGGGHHHH
T ss_pred hcCCCCEEEEeCCCCC--CCCchhc----------cccCcEEEEEeCCCcch--hhhhhhhhhhcCCEEEEecccCCcch
Confidence 4457899999754321 1233311 13577899999876532 11111111257899999999996532
Q ss_pred --HHHHHHHHHHHc--CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762 164 --DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKAL 200 (383)
Q Consensus 164 --~~~~w~~~l~~~--g~~vi~iSa~~g~Gi~~L~~~l~~l 200 (383)
......+.++.. +..++++|+++|.|+.++.+.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 233333444433 3578899999999999887766543
No 381
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.40 E-value=0.0052 Score=64.49 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 160 (383)
...+.+||. ||| ..+...+...+..+|.++.|+|+..+......++...+ .+.|+++++||+|+.
T Consensus 73 ~~~~nliDT--------pG~-~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLDA--------PGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEEC--------CCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred CEEEEEEeC--------CCc-cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 345566663 454 34556677889999999999998766544333333332 378999999999986
No 382
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.40 E-value=0.0023 Score=65.33 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~ 162 (383)
.+..+.+||. ||| ..+...+...+..+|.+|.|+|+..+.......+.... .+.|+++++||+|+...
T Consensus 80 ~~~~i~liDT--------PG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 80 HDCLVNLLDT--------PGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TTEEEEEECC--------CCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred CCeEEEEEEC--------CCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 3556778884 444 33445566778999999999999876544333333333 27899999999999764
No 383
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.34 E-value=0.00018 Score=73.11 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=53.1
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH--HHHHHHH---HH-HHcC--CeEEEeeCc
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWAT---YF-AKQG--TKVIFSNGQ 185 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~w~~---~l-~~~g--~~vi~iSa~ 185 (383)
..+..+|++++|+|+.++......+..... .+.|+++++||+|+.... ....... .+ ...+ ..++++|++
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 457889999999999876544333322222 378999999999996421 1110000 00 0111 468899999
Q ss_pred CCCchhhhhHHHH
Q 016762 186 LGMGTMKLSRLAK 198 (383)
Q Consensus 186 ~g~Gi~~L~~~l~ 198 (383)
+|.|+.+|.+.+.
T Consensus 150 tG~gI~eLle~I~ 162 (501)
T 1zo1_I 150 AGTGIDELLDAIL 162 (501)
T ss_dssp TCTTCTTHHHHTT
T ss_pred eccCcchhhhhhh
Confidence 9999998866553
No 384
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.33 E-value=0.0042 Score=59.08 Aligned_cols=96 Identities=16% Similarity=0.048 Sum_probs=59.5
Q ss_pred HHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEE
Q 016762 141 MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 220 (383)
Q Consensus 141 l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v 220 (383)
+++++....-.+|++|.|..+++.+ +..++.+..++.++..+...+..|...+............. ...-...-|
T Consensus 73 ler~l~~~~P~IIltrg~~~peeli----e~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~-~v~~~g~~v 147 (314)
T 1ko7_A 73 MRKLCRPETPAIIVTRDLEPPEELI----EAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGV-LVDVYGVGV 147 (314)
T ss_dssp HHHHCCTTCCCEEECTTCCCCHHHH----HHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESE-EEEETTEEE
T ss_pred HHHHhcCCCCEEEEeCCCCCCHHHH----HHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEE-EEEECCEEE
Confidence 5555555556678999998876543 33445578787777666666777766654421110000000 000023458
Q ss_pred eEeecCCCChhHHHHhhhcCC
Q 016762 221 GIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 221 ~lvG~pNvGKSTLiN~L~~~~ 241 (383)
+|+|.+++||||+.+.|.++.
T Consensus 148 l~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 148 LITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEESTTSSHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHHHHhcC
Confidence 999999999999999999764
No 385
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.28 E-value=0.0038 Score=57.11 Aligned_cols=113 Identities=10% Similarity=0.009 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCCcCCCc--hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh----c---CCCeEEEEE-c
Q 016762 87 DADLYYWTKSLRPVQWYP--GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G---NRKRILVLN-R 156 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~P--gh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l----~---~k~~ilVlN-K 156 (383)
+..+.+||.......+.. ..++.+.+.+...+..+|++++|+|+.. .......+..++ . .+|.++++| |
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK 148 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHK 148 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcc
Confidence 456888885321111110 1122334444556788999999999874 332222222222 1 468888888 9
Q ss_pred cCCCCHHHHHHHH---------HHHHHcCCe---E--EEeeCcCCCchhhhhHHHHHhh
Q 016762 157 EDMISMADRNAWA---------TYFAKQGTK---V--IFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 157 ~DL~~~~~~~~w~---------~~l~~~g~~---v--i~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
+|+.... ...+. +.....+.. . +.+|++.|.|+.++.+.+.++.
T Consensus 149 ~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 149 EDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp GGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 9998532 22211 122333321 1 5678888888888866665543
No 386
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.27 E-value=0.019 Score=60.56 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=47.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~ 162 (383)
..++.+||. ||| ..+..++...+..+|.+|.|+|+..+.......+.... .+.|+++++||+|+...
T Consensus 81 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 81 PHRINIIDT--------PGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred ceeEEEEeC--------CCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 366777774 665 45566777889999999999999876543332222222 37899999999998653
No 387
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.24 E-value=0.0062 Score=64.21 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=47.2
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 161 (383)
+..+.+||. ||| ..+.......+..+|.++.|+|+..+.......+...+ .+.|+++|+||+|+..
T Consensus 76 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDT--------PGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECC--------CSS-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred CeEEEEEEC--------cCc-cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc
Confidence 566778884 454 33455667788999999999999876654433322222 3789999999999975
No 388
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.13 E-value=0.0048 Score=59.86 Aligned_cols=79 Identities=8% Similarity=0.081 Sum_probs=41.1
Q ss_pred CeEEEEEec-CCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHHHHHHH----HHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762 122 DVVIEVRDA-RIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 122 DlILeV~Da-R~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~~~~~w~----~~l~~~g~~vi~iSa~~g~Gi~~L~~ 195 (383)
++++++++. +..+...+.++...+ .+.|+|+|+||+|+....++.... +.+...+..++.+|++.|.+...+..
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~ 226 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKE 226 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHH
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHH
Confidence 457777664 444444343343333 368999999999999877654432 22333466788899998887433444
Q ss_pred HHHHh
Q 016762 196 LAKAL 200 (383)
Q Consensus 196 ~l~~l 200 (383)
.+..+
T Consensus 227 l~~~i 231 (361)
T 2qag_A 227 QTRLL 231 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 389
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.08 E-value=0.006 Score=62.54 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=61.0
Q ss_pred EEeEeecCCCChhHHHHhhhcCCcc---------------ccCC------CCCceeEE---EEEEeCCcEEEEecCcccc
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMC---------------PAAP------RPGVTRVL---KWVRFGKDLEFLDSPGIIP 274 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~------~pgtT~~~---~~~~~~~~i~l~DTpG~i~ 274 (383)
+|+|+|...+|||||.-+|+-...+ .+.+ .-|.|... ...+-+..+-|+||||-+.
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 6999999999999999999621100 1111 22444332 2222255688999999986
Q ss_pred CCCCcHHHHHHHHHhccc--ccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHh
Q 016762 275 MRISDQAAAIKLAICDDI--GERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL 345 (383)
Q Consensus 275 ~~~~~~~~~~~la~~~~i--~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~~~a~~~ 345 (383)
... +.+.+++ +.-+++ -+.+-........++..+.+. ....+...+|+|-...+..+.++.+..++
T Consensus 113 F~~-Ev~raL~-~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~~ad~~~~~~~i~~~l 180 (548)
T 3vqt_A 113 FSE-DTYRVLT-AVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDREALHPLDVMADIEQHL 180 (548)
T ss_dssp CSH-HHHHHHH-SCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSCCCCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHH-hcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccchhcchhHhhhhhhhhc
Confidence 432 3334443 111221 112222233334444544433 12223345667655556666666665443
No 390
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.02 E-value=0.013 Score=51.63 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=36.7
Q ss_pred hhhcCeEEEEEecC-CCCCCCc--HHHHHHh--------cCCCeEEEEEccCCCCHHHHHHHHHHH--------HHcCCe
Q 016762 118 LKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWATYF--------AKQGTK 178 (383)
Q Consensus 118 idr~DlILeV~DaR-~p~~~~~--~~l~~~l--------~~k~~ilVlNK~DL~~~~~~~~w~~~l--------~~~g~~ 178 (383)
+..+|.+++|+|+. .+.+... ..+..++ .+.|+++|+||+|+.+......+.+.+ ...+..
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 34599999999998 4433322 1222222 368899999999998654333222211 112334
Q ss_pred EEEeeCcCCCc
Q 016762 179 VIFSNGQLGMG 189 (383)
Q Consensus 179 vi~iSa~~g~G 189 (383)
++.+|++.|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 55667766643
No 391
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.99 E-value=0.0069 Score=62.90 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChhHHHHhhhcC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+.++|||-+|+|||||+|+|+|-
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 35999999999999999999975
No 392
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.92 E-value=0.0071 Score=59.47 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=35.5
Q ss_pred CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762 147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 147 ~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L 193 (383)
.+|.++|+||+|+........+.+.+...+..++++|++.+.|+.+|
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L 260 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKA 260 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSC
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHH
Confidence 58999999999998554455555555444668999999998887665
No 393
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.87 E-value=0.0028 Score=54.86 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=26.9
Q ss_pred EEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEE
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK 256 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~ 256 (383)
.++|+|.+++|||||+|.|.+... ........+|+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~ 45 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK 45 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence 489999999999999999987432 12234555666543
No 394
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.86 E-value=0.0099 Score=62.67 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~ 162 (383)
+..+.+||. ||| ..+..+....+..+|.+|.|+|+..+.......+...+ .+.|+++|+||+|+...
T Consensus 74 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 74 GHRVNIIDT--------PGH-VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp TEEEEEECC--------CCC-SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CeeEEEEEC--------cCC-cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 566778884 333 22344556778889999999999876554443333222 37899999999999753
No 395
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.79 E-value=0.0038 Score=60.18 Aligned_cols=113 Identities=13% Similarity=0.086 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCCcCCC---chHH-HHHHHHHHHHh-hhcCeEEEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQWY---PGHI-AKTEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~---Pgh~-~~~~~~l~~~i-dr~DlILeV~DaR~p~~~~~~-~l~~~l~--~k~~ilVlNK~D 158 (383)
..++.+||...-...-. |.+. ......+..++ ...++||.|+|+.......+. .+.+.+. +.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46899999654211000 2222 23444555666 445678888888765444433 2444443 679999999999
Q ss_pred CCCHHH-HHHHHHH-HH--HcC-CeEEEeeCcCCCchhhhhHHHHH
Q 016762 159 MISMAD-RNAWATY-FA--KQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 159 L~~~~~-~~~w~~~-l~--~~g-~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+.+... ...+.+. .. +.| ..++.+|+++|.|+.+|.+.+.+
T Consensus 209 l~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 986532 1222110 00 012 24567899999998888666544
No 396
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.73 E-value=0.017 Score=57.57 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.8
Q ss_pred CceEEeEeecCCCChhHHHHhhh
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLL 238 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~ 238 (383)
.+..|+++|.+||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 397
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.68 E-value=0.016 Score=55.51 Aligned_cols=105 Identities=11% Similarity=-0.013 Sum_probs=61.9
Q ss_pred cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCC-
Q 016762 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS- 161 (383)
Q Consensus 83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~- 161 (383)
++..+.+++++|...-.- +. ..+.+.+|+++.|+|+..+... ..+...+.+.+.++++||+|+.+
T Consensus 143 ~~~~~~~~iliDT~Gi~~---~~---------~~v~~~~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 143 CEAAGFDVILVETVGVGQ---SE---------TAVADLTDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDG 208 (337)
T ss_dssp HHHTTCCEEEEEECSSSS---CH---------HHHHTTSSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCC
T ss_pred HhcCCCCEEEEECCCCCc---ch---------hhHHhhCCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCc
Confidence 344578888888654321 11 1345899999999997533210 00100111246688889999865
Q ss_pred HHHHHHHHHHHHH-----c------CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762 162 MADRNAWATYFAK-----Q------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (383)
Q Consensus 162 ~~~~~~w~~~l~~-----~------g~~vi~iSa~~g~Gi~~L~~~l~~l~ 201 (383)
..........+.. . ..+++++|+.++.|+.+|.+.+.++.
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3322222222321 1 35688999999999999988776653
No 398
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.67 E-value=0.015 Score=59.61 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=44.8
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~ 161 (383)
-||| ..+..++.+.+.-+|-.+.|+||..+....-..+.+.. .+.|+++++||+|...
T Consensus 107 TPGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred CCCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 3888 78888999999999999999999876544333333322 4899999999999853
No 399
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.56 E-value=0.024 Score=50.10 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=46.6
Q ss_pred cCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH--HHHHHHHHHHHc--CCeEEEeeCcCCCchhhhhHH
Q 016762 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 121 ~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~--~~~~w~~~l~~~--g~~vi~iSa~~g~Gi~~L~~~ 196 (383)
.+.+++|+|+..+....... ... ..+|.++|+||+|+.+.. ......+.+... +..++++|+++|.|+.++.+.
T Consensus 140 ~~~~~~v~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 140 THKRIVVISTTEGDDTIEKH-PGI-MKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp CSEEEEEEEGGGCTTTTTTC-HHH-HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHH
T ss_pred cCcEEEEEecCcchhhHhhh-hhH-hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHH
Confidence 34566777764322211111 111 257889999999996542 223333334333 467889999999999988766
Q ss_pred HHH
Q 016762 197 AKA 199 (383)
Q Consensus 197 l~~ 199 (383)
+.+
T Consensus 218 l~~ 220 (226)
T 2hf9_A 218 IEK 220 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 400
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.0062 Score=52.41 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=34.0
Q ss_pred HHHhhhcCeEEEEEecC-CCCCCCc--HHHHHHh--------cCCCeEEEEEccCCCCHHHHHHH
Q 016762 115 KDQLKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAW 168 (383)
Q Consensus 115 ~~~idr~DlILeV~DaR-~p~~~~~--~~l~~~l--------~~k~~ilVlNK~DL~~~~~~~~w 168 (383)
...+..+|++++|+|+. .+.+... ..+..++ .+.|+++|+||+|+.+.......
T Consensus 113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 177 (193)
T 2ged_A 113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKI 177 (193)
T ss_dssp HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHH
T ss_pred HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHH
Confidence 34556799999999987 3222111 1122222 26899999999999865544443
No 401
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.47 E-value=0.021 Score=55.04 Aligned_cols=108 Identities=8% Similarity=-0.041 Sum_probs=62.9
Q ss_pred CCcEEEEcCCCCCcC----CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc--CCCeEEEEEccC
Q 016762 87 DADLYYWTKSLRPVQ----WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG--NRKRILVLNRED 158 (383)
Q Consensus 87 ~~~~vi~~~~L~~~q----w~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~--~k~~ilVlNK~D 158 (383)
..++.+||...-... ...+-.......+..++.++|+|++++|+........ ..+...+. +++.++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567889986432110 0112223344555678999999999997643222212 23333332 578999999999
Q ss_pred CCCHHHHHHHHHHHH----HcCCeEEEeeCcCCCchhhhhHH
Q 016762 159 MISMADRNAWATYFA----KQGTKVIFSNGQLGMGTMKLSRL 196 (383)
Q Consensus 159 L~~~~~~~~w~~~l~----~~g~~vi~iSa~~g~Gi~~L~~~ 196 (383)
+++.... +.+.+. ..+.+++.++++.+.++.+....
T Consensus 215 l~~~~~~--~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 215 LMDKGTD--AVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GCCTTCC--SHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred cCCCccc--HHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 9865421 122222 23456777888888777655433
No 402
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.23 E-value=0.008 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.8
Q ss_pred EEeEeecCCCChhHHHHhhhcCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
+++|+|-+++|||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 403
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.23 E-value=0.0022 Score=62.11 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC---------CCc---HHHHHHh-----cCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTH---PLMDQWL-----GNRK 149 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~---------~~~---~~l~~~l-----~~k~ 149 (383)
+..+.+||...+ ++..+......+.++.||+|+|..+... ... ..+..+. .+.|
T Consensus 192 ~~~l~iwDt~GQ---------e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 192 DLHFKMFDVGGQ---------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp TEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred CeeEEEEeCCCc---------hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 566788885443 3333444457899999999999876321 011 1122222 2578
Q ss_pred eEEEEEccCCCC--------------------HHHHHHHHH-HHH-------HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 150 RILVLNREDMIS--------------------MADRNAWAT-YFA-------KQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 150 ~ilVlNK~DL~~--------------------~~~~~~w~~-~l~-------~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
+++++||+||.. .++...|.. .|. ..+..++++||+.+.|+.++-+.+.
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 999999999842 223333332 111 1234567899999999887755443
No 404
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.19 E-value=0.014 Score=51.46 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
....|+|+|-+++|||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999864
No 405
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.19 E-value=0.0095 Score=62.20 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (383)
Q Consensus 103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~ 160 (383)
-||| ..+..++...+.-+|..+.|+||..+....-..+.+.. .+.|+++++||+|..
T Consensus 74 TPGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 74 TPGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp CCCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred CCCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 3898 77888899999999999999999987665444433332 378999999999975
No 406
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.11 E-value=0.013 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEeEeecCCCChhHHHHhhhcC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..++|+|.+++|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999864
No 407
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.08 E-value=0.0087 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-+++|||||+|.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999863
No 408
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.07 E-value=0.032 Score=50.06 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEecCCCCCC-CcHHH---HHHh------cCCCeEEEEEcc-CCCCHHHHHHHHHHHH--
Q 016762 107 IAKTEKELKDQLKLMDVVIEVRDARIPLST-THPLM---DQWL------GNRKRILVLNRE-DMISMADRNAWATYFA-- 173 (383)
Q Consensus 107 ~~~~~~~l~~~idr~DlILeV~DaR~p~~~-~~~~l---~~~l------~~k~~ilVlNK~-DL~~~~~~~~w~~~l~-- 173 (383)
+.+++...+.+.+.+|.||+|+|+.+.... ...++ ..++ .+.|+++..||. |+...-...+..+.+.
T Consensus 112 Q~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~ 191 (227)
T 3l82_B 112 RYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN 191 (227)
T ss_dssp -----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCc
Confidence 355555555789999999999999765321 23344 2222 245888999996 6642111122222221
Q ss_pred --HcCCeEEEeeCcCCCchhhh
Q 016762 174 --KQGTKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 174 --~~g~~vi~iSa~~g~Gi~~L 193 (383)
+....+..+||.+|.|+.+-
T Consensus 192 ~l~R~W~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 192 LLNHPWLVQDTEAETLTGFLNG 213 (227)
T ss_dssp GGCSCEEEEEEETTTCTTHHHH
T ss_pred CCCCCEEEEEeECCCCcCHHHH
Confidence 11245778999999997654
No 409
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.02 E-value=0.012 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEEeEeecCCCChhHHHHhhhcCC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
..++|+|.++||||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998753
No 410
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.94 E-value=0.039 Score=56.52 Aligned_cols=62 Identities=21% Similarity=0.112 Sum_probs=42.4
Q ss_pred HHHHHHHhhhcCeEEEEEecCCC-CCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHH
Q 016762 111 EKELKDQLKLMDVVIEVRDARIP-LSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF 172 (383)
Q Consensus 111 ~~~l~~~idr~DlILeV~DaR~p-~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l 172 (383)
.+.....+.++|+||+|+|+..+ .......+...+. +.|+++|+||+|+++.+++......+
T Consensus 179 ~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 179 PAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 34555678999999999999764 2222233333333 46899999999999887665544433
No 411
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.84 E-value=0.0089 Score=52.04 Aligned_cols=85 Identities=12% Similarity=0.012 Sum_probs=54.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCC
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g 187 (383)
.....+|.++.|+|...+.+..+. . +..+. .+.|+++|+||+||..... .........+.+..++.+|++.+
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS 152 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 456789999999998765432221 1 11111 2578999999999964321 11112233445677788999999
Q ss_pred CchhhhhHHHHHh
Q 016762 188 MGTMKLSRLAKAL 200 (383)
Q Consensus 188 ~Gi~~L~~~l~~l 200 (383)
.|+.++.+.+.+.
T Consensus 153 ~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 153 TNVEEAFKNILTE 165 (199)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999887666544
No 412
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.69 E-value=0.0046 Score=60.05 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC------CcH------HHHHHh-----cCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST------THP------LMDQWL-----GNRK 149 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~------~~~------~l~~~l-----~~k~ 149 (383)
+..+.+||...+ +...+......+.++.||+|+|..+.... .+. .+..+. .+.|
T Consensus 200 ~~~l~i~Dt~Gq---------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 200 NVPFKMVDVGGQ---------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp TEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred CeEEEEEeccch---------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 456677774322 44444444668999999999998752100 111 122222 2578
Q ss_pred eEEEEEccCCCC---------------------HHHHHHHH-HHHH-------HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762 150 RILVLNREDMIS---------------------MADRNAWA-TYFA-------KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (383)
Q Consensus 150 ~ilVlNK~DL~~---------------------~~~~~~w~-~~l~-------~~g~~vi~iSa~~g~Gi~~L~~~l~~ 199 (383)
+|+++||+||.. .++...|. ..|. ..+..++++||+.+.|+..+-+.+.+
T Consensus 271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 999999999852 12222222 1121 22356778999999999877554443
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.67 E-value=0.013 Score=50.80 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|.+|+|||||+|.|.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4899999999999999999864
No 414
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.65 E-value=0.013 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-+++|||||+|.|.|-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 415
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.56 E-value=0.017 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-+++|||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 416
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.48 E-value=0.011 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..|+|+|.+++|||||.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999854
No 417
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=94.42 E-value=0.024 Score=54.23 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEEEccCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDM 159 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-------~~k~~ilVlNK~DL 159 (383)
.+.+-+||...+..-.-|- . ....+.+.++.+++|+|..+........+..++ .+.|++++.||+||
T Consensus 45 ~v~LqIWDTAGQErf~~~~-----l-~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL 118 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPS-----Y-DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118 (331)
T ss_dssp SSCEEEEECCSCSSSCCCS-----H-HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS
T ss_pred EEEEEEEECCCchhccchh-----h-hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc
Confidence 4789999965542110000 0 223568999999999999876111111222221 36789999999999
Q ss_pred CCHH
Q 016762 160 ISMA 163 (383)
Q Consensus 160 ~~~~ 163 (383)
.+.+
T Consensus 119 ~~~~ 122 (331)
T 3r7w_B 119 LSED 122 (331)
T ss_dssp SCSH
T ss_pred Cchh
Confidence 8753
No 418
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.42 E-value=0.0091 Score=51.63 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|||.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 419
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.41 E-value=0.016 Score=51.79 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-+++|||||+|.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999974
No 420
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.30 E-value=0.023 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChhHHHHhhhcC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+..|+|+|-+++|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 421
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.27 E-value=0.018 Score=49.88 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.6
Q ss_pred EeEeecCCCChhHHHHhhhcC
Q 016762 220 AGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~ 240 (383)
++|+|-+++|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 799999999999999999864
No 422
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.24 E-value=0.018 Score=51.79 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=20.9
Q ss_pred EEeEeecCCCChhHHHHhhhcCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
.++|+|-++||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999754
No 423
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=94.23 E-value=0.024 Score=54.53 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=43.6
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCC------CCCCcH------HHHHHh-----cCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP------LSTTHP------LMDQWL-----GNR 148 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p------~~~~~~------~l~~~l-----~~k 148 (383)
.+..+.+||...+ ++..+......+.++.||+|+|..+- ....+. .+...+ .+.
T Consensus 159 ~~v~l~iwDtaGQ---------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~ 229 (340)
T 4fid_A 159 KDIPFHLIDVGGQ---------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA 229 (340)
T ss_dssp SSCEEEEEECCSC---------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred eeeeeccccCCCc---------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence 4577788885433 56566666778999999999998621 001111 122222 357
Q ss_pred CeEEEEEccCCCC
Q 016762 149 KRILVLNREDMIS 161 (383)
Q Consensus 149 ~~ilVlNK~DL~~ 161 (383)
|+++++||+||..
T Consensus 230 piiLv~NK~DL~~ 242 (340)
T 4fid_A 230 VKLIFLNKMDLFE 242 (340)
T ss_dssp EEEEEEECHHHHH
T ss_pred eEEEEEECchhhh
Confidence 8999999999854
No 424
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.14 E-value=0.02 Score=54.16 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=19.8
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.++|+|.+|+|||||++.|.|
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 599999999999999999985
No 425
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.14 E-value=0.024 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.3
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 426
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.09 E-value=0.025 Score=49.27 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChhHHHHhhhcC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..|+|+|.+++||||+++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999864
No 427
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.05 E-value=0.024 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999974
No 428
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.01 E-value=0.022 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.|+|+|.+++||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 429
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.00 E-value=0.023 Score=48.59 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=18.3
Q ss_pred EEeEeecCCCChhHHHHhhh
Q 016762 219 RAGIVGYPNVGKSSLINRLL 238 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~ 238 (383)
.++++|.+++|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999865
No 430
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=93.98 E-value=0.012 Score=61.47 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=36.3
Q ss_pred EEeEeecCCCChhHHHHhhhcCCcc-----c------cCCCC------CceeEEEEEE---eCCcEEEEecCccccC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMC-----P------AAPRP------GVTRVLKWVR---FGKDLEFLDSPGIIPM 275 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~-----~------v~~~p------gtT~~~~~~~---~~~~i~l~DTpG~i~~ 275 (383)
+|+|+|...+|||||..+|+-.... . +.|.. |.|....... -+..+.|+||||-...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 5899999999999999999621110 1 11111 4454432222 2556889999998753
No 431
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.98 E-value=0.023 Score=49.08 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.3
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.++++|.+++|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999985
No 432
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=93.95 E-value=0.031 Score=53.47 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=61.4
Q ss_pred CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecC-------CCCCCCc-----HHHHHHh-----cCC
Q 016762 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDAR-------IPLSTTH-----PLMDQWL-----GNR 148 (383)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR-------~p~~~~~-----~~l~~~l-----~~k 148 (383)
.++.+-+||...+ ++..+......+.++.||+|+|.. +...... ..+..+. .+.
T Consensus 165 ~~v~l~iwDtgGQ---------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 165 QSVIFRMVDVGGQ---------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp TTEEEEEEEECCS---------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred eceeeEEEEcCCc---------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 4567778885333 555555557789999999999764 2111111 1122222 257
Q ss_pred CeEEEEEccCCCCHH------------------HHHHHHHHH----H------HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762 149 KRILVLNREDMISMA------------------DRNAWATYF----A------KQGTKVIFSNGQLGMGTMKLSRLAK 198 (383)
Q Consensus 149 ~~ilVlNK~DL~~~~------------------~~~~w~~~l----~------~~g~~vi~iSa~~g~Gi~~L~~~l~ 198 (383)
|+++++||+||.... ..+.-.+++ . ..+....++||+.+.+++.+-..+.
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 899999999985422 112222222 1 1234466789999988877654443
No 433
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.91 E-value=0.027 Score=49.27 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..|+|+|.+++|||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999753
No 434
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.86 E-value=0.027 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|..++|||||++.|.|-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
No 435
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.82 E-value=0.028 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.5
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|..++|||||++.|.|-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999975
No 436
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=93.79 E-value=0.022 Score=61.30 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHH-hcCCCeEEEEEccCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQW-LGNRKRILVLNREDMI 160 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l-~~~-l~~k~~ilVlNK~DL~ 160 (383)
+..+.+||. ||| .++..+....+..+|.+|.|+|+..+.......+ ... ..+.|+++++||+|+.
T Consensus 97 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDS--------PGH-VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECC--------CCC-CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEEC--------cCc-hhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 455677774 444 3344556678899999999999988765444332 222 2378999999999986
No 437
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.73 E-value=0.0099 Score=58.52 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCC------CCCCc--HH----HHHHh-----cCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP------LSTTH--PL----MDQWL-----GNRK 149 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p------~~~~~--~~----l~~~l-----~~k~ 149 (383)
+..+-+||...+ ++.........+.++.||+|+|..+- ..+.+ .+ +..+. .+.|
T Consensus 216 ~v~l~iwDtaGQ---------e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 216 KVNFHMFDVGGQ---------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 286 (402)
T ss_dssp TEEEEEEEECCS---------GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC
T ss_pred Cccceecccchh---------hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe
Confidence 456777875443 34344444678999999999998651 00011 11 22222 2468
Q ss_pred eEEEEEccCCC
Q 016762 150 RILVLNREDMI 160 (383)
Q Consensus 150 ~ilVlNK~DL~ 160 (383)
+++++||+||.
T Consensus 287 iiLvgNK~DL~ 297 (402)
T 1azs_C 287 VILFLNKQDLL 297 (402)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEEChhhh
Confidence 99999999984
No 438
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.72 E-value=0.03 Score=51.49 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||+|.|.|-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 439
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.70 E-value=0.03 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
No 440
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.67 E-value=0.031 Score=50.92 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 441
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.65 E-value=0.029 Score=51.72 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.++|+|-+++|||||++.|.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999986
No 442
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.63 E-value=0.036 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChhHHHHhhhcC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+..|+|+|.+++|||||.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 443
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.63 E-value=0.038 Score=46.90 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.0
Q ss_pred eEEeEeecCCCChhHHHHhhhc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~ 239 (383)
..|+|+|.+++||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999975
No 444
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.62 E-value=0.032 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|..++|||||++.|.|-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
No 445
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.62 E-value=0.031 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999974
No 446
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.62 E-value=0.034 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.2
Q ss_pred ceEEeEeecCCCChhHHHHhhh
Q 016762 217 AVRAGIVGYPNVGKSSLINRLL 238 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~ 238 (383)
+..|+|+|.+++|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999998
No 447
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.60 E-value=0.069 Score=50.03 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=21.4
Q ss_pred CceEEeEeecCCCChhHHHHhhhc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.+..|+|+|-+++|||||.+.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 448
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.60 E-value=0.03 Score=50.10 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 449
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.59 E-value=0.03 Score=49.91 Aligned_cols=29 Identities=14% Similarity=-0.050 Sum_probs=23.3
Q ss_pred EEeEeecCCCChhHHHHhhhcCCccccCCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPR 248 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~ 248 (383)
.++|+|..++|||||++.|.|- ....+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 4899999999999999999986 4333433
No 450
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.58 E-value=0.03 Score=51.68 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 451
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.57 E-value=0.098 Score=49.12 Aligned_cols=48 Identities=8% Similarity=0.118 Sum_probs=27.9
Q ss_pred CCCeEEEEEccCCCCHHHHH----HHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762 147 NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (383)
Q Consensus 147 ~k~~ilVlNK~DL~~~~~~~----~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~ 195 (383)
+.++++|+||+|+....++. ...+.....+..++.+|++.+ +++++..
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHH
Confidence 46899999999999765432 233445566778888999999 8877643
No 452
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.52 E-value=0.033 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 453
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.52 E-value=0.028 Score=49.28 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++++|.+++|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999874
No 454
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.51 E-value=0.075 Score=46.50 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.1
Q ss_pred CceEEeEeecCCCChhHHHHhhhc
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.+..|+|+|.+++|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999975
No 455
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.45 E-value=0.036 Score=48.36 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.|+|+|.+++||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999986
No 456
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.44 E-value=0.035 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999974
No 457
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.43 E-value=0.036 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.8
Q ss_pred EEeEeecCCCChhHHHHhhhcCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
.++|+|-.++|||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999753
No 458
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.41 E-value=0.036 Score=50.36 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 459
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.39 E-value=0.036 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4899999999999999999974
No 460
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.38 E-value=0.036 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChhHHHHhhhcC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..|+|+|.+++||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999853
No 461
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.37 E-value=0.037 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
No 462
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.30 E-value=0.038 Score=51.11 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
No 463
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.29 E-value=0.062 Score=56.69 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.4
Q ss_pred eEEeEeecCCCChhHHHHhhh
Q 016762 218 VRAGIVGYPNVGKSSLINRLL 238 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~ 238 (383)
.+|+|+|...+|||||.-+|+
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL 34 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVL 34 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 369999999999999999986
No 464
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.28 E-value=0.039 Score=50.79 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.27 E-value=0.039 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 466
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.25 E-value=0.025 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|||-+++|||||++.|.|-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5999999999999999999974
No 467
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.25 E-value=0.039 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999974
No 468
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.24 E-value=0.053 Score=47.48 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhcC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
...|+|+|.+++||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999864
No 469
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.24 E-value=0.031 Score=48.95 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=26.3
Q ss_pred EeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEE
Q 016762 220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL 255 (383)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~ 255 (383)
|.|+|-++|||+||++.|..+..- ..-..+.|||..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 689999999999999999854321 223456677764
No 470
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.23 E-value=0.046 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.9
Q ss_pred eEEeEeecCCCChhHHHHhhhc
Q 016762 218 VRAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~ 239 (383)
..|.++|.|++||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999985
No 471
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.23 E-value=0.052 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred ceEEeEeecCCCChhHHHHhhhc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (383)
+..|.++|.|++||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999974
No 472
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.22 E-value=0.087 Score=55.57 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-Hh-cCCCeEEEEEccCCCCH
Q 016762 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISM 162 (383)
Q Consensus 104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~ 162 (383)
||| .++..++...+.-+|-.+.|+|+-.+....-..+.+ +. .+.|+++++||+|....
T Consensus 93 PGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 93 PGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred CCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 888 778899999999999999999998766543333332 22 38999999999998643
No 473
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.21 E-value=0.035 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.8
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.|+|+|.+++||||+.+.|..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.19 E-value=0.041 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999974
No 475
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.18 E-value=0.042 Score=45.95 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEeEeecCCCChhHHHHhh
Q 016762 219 RAGIVGYPNVGKSSLINRL 237 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L 237 (383)
.|+|+|.|++||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 476
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.14 E-value=0.042 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999975
No 477
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.10 E-value=0.018 Score=55.72 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=38.8
Q ss_pred CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCC-------CCCCCc-HH----HHHHh-----cCCC
Q 016762 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI-------PLSTTH-PL----MDQWL-----GNRK 149 (383)
Q Consensus 87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~-------p~~~~~-~~----l~~~l-----~~k~ 149 (383)
...+-+||...+ ++..+......+.++.+|+|+|... ...... .+ +..+. .+.|
T Consensus 182 ~v~l~iwDtaGQ---------e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQ---------RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCS---------TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCc---------hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 466788885444 3333333456899999999999751 111111 11 22222 2578
Q ss_pred eEEEEEccCCC
Q 016762 150 RILVLNREDMI 160 (383)
Q Consensus 150 ~ilVlNK~DL~ 160 (383)
+++++||+||.
T Consensus 253 iiLvgNK~DL~ 263 (354)
T 2xtz_A 253 FMLFLNKFDIF 263 (354)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECcchh
Confidence 99999999984
No 478
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.07 E-value=0.042 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-+++|||||+|.|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 479
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.98 E-value=0.069 Score=52.98 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.3
Q ss_pred CceEEeEeecCCCChhHHHHhhh
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLL 238 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~ 238 (383)
.+..|+++|.+||||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35578999999999999999997
No 480
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.95 E-value=0.045 Score=47.71 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChhHHHHhhhcC
Q 016762 218 VRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
..|+|+|.+++||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999753
No 481
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.95 E-value=0.032 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=15.1
Q ss_pred EEeEeecCCCChhHHHHhhh-cC
Q 016762 219 RAGIVGYPNVGKSSLINRLL-KR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~-~~ 240 (383)
.++|+|-+++|||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 64
No 482
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.94 E-value=0.05 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.0
Q ss_pred CceEEeEeecCCCChhHHHHhhhcC
Q 016762 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.+..|+|+|-+++|||||++.|.+-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4556999999999999999999864
No 483
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.93 E-value=0.042 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|..++|||||++.|.|-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4899999999999999999974
No 484
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.90 E-value=0.052 Score=47.43 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.6
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.|+|+|.+++||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 485
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.83 E-value=0.12 Score=44.61 Aligned_cols=83 Identities=13% Similarity=0.039 Sum_probs=52.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCC
Q 016762 116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (383)
Q Consensus 116 ~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g 187 (383)
.....++.++.|+|..+..+..+.. +..+. .+.++++++||+||..... .........+.+..++.+|++++
T Consensus 97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS 176 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 4567789999999986543322211 11111 2568999999999864221 11112233445667778999999
Q ss_pred CchhhhhHHHH
Q 016762 188 MGTMKLSRLAK 198 (383)
Q Consensus 188 ~Gi~~L~~~l~ 198 (383)
.|+.++.+.+.
T Consensus 177 ~~v~~l~~~l~ 187 (191)
T 1oix_A 177 TNVEAAFQTIL 187 (191)
T ss_dssp TTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99988866654
No 486
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.77 E-value=0.047 Score=52.75 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-+++|||||+|+|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999974
No 487
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.69 E-value=0.049 Score=48.03 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.++|+|.+++|||||++.|.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 488
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.68 E-value=0.071 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChhHHHHhhhcC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+..|.++|.+++||||+.+.|.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999999753
No 489
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.65 E-value=0.054 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 490
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.59 E-value=0.054 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.|+|+|.+++||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 4899999999999999999853
No 491
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.53 E-value=0.07 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.8
Q ss_pred EEeEeecCCCChhHHHHhhhcCC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKRR 241 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (383)
.++++|-.++|||||++.|.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999753
No 492
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.52 E-value=0.065 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.9
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.|.++|.|++||||+.+.|..+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999853
No 493
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.46 E-value=0.061 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.++|+|++|+|||||++.|..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 494
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.46 E-value=0.061 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEeEeecCCCChhHHHHhhhcC
Q 016762 219 RAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
.++|+|-.++|||||++.|.|-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999974
No 495
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.43 E-value=0.065 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.4
Q ss_pred ceEEeEeecCCCChhHHHHhhhc
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (383)
+..|+++|.|++||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999974
No 496
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.42 E-value=0.063 Score=46.84 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.|+|+|.|++||||+.+.|.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 497
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.32 E-value=0.072 Score=45.49 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.4
Q ss_pred EEeEeecCCCChhHHHHhhhc
Q 016762 219 RAGIVGYPNVGKSSLINRLLK 239 (383)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (383)
.|.|+|.|++||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 498
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.31 E-value=0.071 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChhHHHHhhhcC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+..|+|+|-.++|||||++.|.+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 499
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.24 E-value=0.074 Score=46.10 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChhHHHHhhhcC
Q 016762 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (383)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (383)
+..|+|+|.+++||||+.+.|..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999854
No 500
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.23 E-value=0.14 Score=50.64 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=37.6
Q ss_pred cCeEEEEEecC-CCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHHHHH----HHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762 121 MDVVIEVRDAR-IPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKL 193 (383)
Q Consensus 121 ~DlILeV~DaR-~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~~~~~----w~~~l~~~g~~vi~iSa~~g~Gi~~L 193 (383)
++++|+..+.. ..+...+..+...+ .+.++|+|+||+|+.++.++.. ..+.+...|..++.+|++.+.++.++
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKL 217 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHH
Confidence 34455554432 23333333333333 3678999999999998766543 33445556778888898887776543
Done!