Your job contains 1 sequence.
>016763
MVARTPPKQRKVLAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPRSTR
GYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSLPAMLVGETVGEILQATQF
AREIVAAVATKTKKITIEDPKTPVTEKRNHRPNPENTELRVRRKKEKQNKLQSIRSESDS
PKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPWTKKTVLFPNPLFRATPSQQ
QKFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITRNKQTTPHKFLIKSPPSASKF
QVKIKSPPVISSLSPTRSTNLSKKSPKLSTASKLRRSFSPSRLANRLVSPLKSRKTVQKC
DGQMSGLKQRPTYVPKRFSMGRI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016763
(383 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2096279 - symbol:ATN "AT3G05330" species:3702 ... 886 9.6e-89 1
UNIPROTKB|E1BQL2 - symbol:E1BQL2 "Uncharacterized protein... 157 6.3e-08 1
UNIPROTKB|Q5ZMJ9 - symbol:SRRM1 "Serine/arginine repetiti... 143 2.0e-06 1
UNIPROTKB|E1BP16 - symbol:SRRM1 "Uncharacterized protein"... 143 2.1e-06 1
UNIPROTKB|Q8IYB3 - symbol:SRRM1 "Serine/arginine repetiti... 143 2.1e-06 1
UNIPROTKB|E9PCT1 - symbol:SRRM1 "Serine/arginine repetiti... 140 4.5e-06 1
UNIPROTKB|F1PZZ3 - symbol:NEFH "Uncharacterized protein" ... 139 7.0e-06 1
UNIPROTKB|P12036 - symbol:NEFH "Neurofilament heavy polyp... 137 1.1e-05 1
UNIPROTKB|F1MSQ6 - symbol:NEFH "Uncharacterized protein" ... 129 8.9e-05 1
ZFIN|ZDB-GENE-070402-1 - symbol:setx "senataxin" species:... 131 0.00013 1
UNIPROTKB|A9Z1X7 - symbol:SRRM1 "Serine/arginine repetiti... 126 0.00015 1
UNIPROTKB|J9P010 - symbol:NEFH "Uncharacterized protein" ... 126 0.00018 1
WB|WBGene00006820 - symbol:unc-89 species:6239 "Caenorhab... 132 0.00037 1
DICTYBASE|DDB_G0289193 - symbol:H2Av2 "histone H2A domain... 115 0.00043 1
UNIPROTKB|E1BQL1 - symbol:E1BQL1 "Uncharacterized protein... 119 0.00047 1
TAIR|locus:2127786 - symbol:AT4G32420 species:3702 "Arabi... 121 0.00049 1
UNIPROTKB|F1ND22 - symbol:F1ND22 "Uncharacterized protein... 120 0.00074 1
UNIPROTKB|Q9UQ35 - symbol:SRRM2 "Serine/arginine repetiti... 124 0.00089 1
>TAIR|locus:2096279 [details] [associations]
symbol:ATN "AT3G05330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0000914 "phragmoplast assembly"
evidence=IMP] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0007108 "cytokinesis, initiation of separation"
evidence=IMP] [GO:0009574 "preprophase band" evidence=IDA]
[GO:0000226 "microtubule cytoskeleton organization" evidence=RCA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] EMBL:CP002686 GO:GO:0005875
GO:GO:0007108 GO:GO:0009574 GO:GO:0000914 EMBL:BT006478
EMBL:AK175941 EMBL:AK227452 IPI:IPI00775638 RefSeq:NP_187184.2
UniGene:At.40689 DIP:DIP-46424N STRING:Q84M91
EnsemblPlants:AT3G05330.1 GeneID:819697 KEGG:ath:AT3G05330
TAIR:At3g05330 InParanoid:Q84M91 OMA:PRNRPWA PhylomeDB:Q84M91
ProtClustDB:CLSN2690727 ArrayExpress:Q84M91 Genevestigator:Q84M91
Uniprot:Q84M91
Length = 444
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 212/395 (53%), Positives = 276/395 (69%)
Query: 1 MVARTPPKQRKV---LAPLNPVLLRETVKKVDKCMARLQELQYTVTGGTKMISGVSLSPR 57
MVARTP KQRKV + PLN LL+ET+ KVDKCM RLQELQYT+ GGTK++SGV+LSPR
Sbjct: 1 MVARTPQKQRKVAMVVPPLNSDLLKETINKVDKCMERLQELQYTIAGGTKVVSGVNLSPR 60
Query: 58 STRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSLPAMLVGETVGEILQA 117
STR YL+TSLRCKQE+LRIKNAT +KSP GKFPA + G+WR MSLPAML+GETV EILQA
Sbjct: 61 STRIYLKTSLRCKQETLRIKNATNKKSPVGKFPASSPGDWRKMSLPAMLLGETVNEILQA 120
Query: 118 TQFAREIVAAVATK----TKKITI--ED--PKTPVTEKRNHRPNPE--NTELRVRRKKEK 167
+Q R+IV A+A K ++++T+ ED PKTP T++++ NPE ++ ++ RRKKEK
Sbjct: 121 SQVTRDIVDAIAPKKSRKSRRLTMSQEDDGPKTPETQQKSREQNPETVSSNIKARRKKEK 180
Query: 168 QNKLQSIRSESDSPKR-QRAQSRINFKVSPPKVIELDKENN-RYLANRVSPRNKPWTKKT 225
QN+ RSESDSP QRA+SRI F+ P+V + EN+ R+LANRVSP++KPW KK
Sbjct: 181 QNR----RSESDSPPSLQRARSRIAFRTISPQVKGNNGENSFRHLANRVSPKHKPWVKKA 236
Query: 226 VLFPNPLF-RATPSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITRNKQT 284
VLFPNPLF T +QQ KF +T SPVIAR++ +S I++ NK+T
Sbjct: 237 VLFPNPLFISGTATQQAKFSRTMSPVIARNE--------------ISSIKN-----NKET 277
Query: 285 TPHKFLIKSPP-SASKFQVKIKSPPVISSLSPTRS-TNLSKKSPKLSTASKLRRSFSPSR 342
P+KFLIKSPP SASKFQVKI+SPP + +SPTR+ +N +KSP+ + S R +
Sbjct: 278 -PYKFLIKSPPTSASKFQVKIRSPPKVL-VSPTRNGSNSVRKSPR-GSRSPTRTVNLGKK 334
Query: 343 LANRLVSPLKSRKTVQKCDGQMSGLKQRPTYVPKR 377
A+ +SP+ R T ++ + K R ++ P R
Sbjct: 335 SAS--ISPI--RNTGKRSPKLSTAAKLRRSFTPTR 365
Score = 185 (70.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 69/195 (35%), Positives = 99/195 (50%)
Query: 168 QNKLQSIRSESDSPKR------QRAQSRINFKV-SPPKVIELDKENNRYLANRVSPRNKP 220
+N++ SI++ ++P + + S+ K+ SPPKV+ + N + R SPR
Sbjct: 265 RNEISSIKNNKETPYKFLIKSPPTSASKFQVKIRSPPKVL-VSPTRNGSNSVRKSPRGSR 323
Query: 221 WTKKTVLFPNPLFRATPSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITR 280
+TV +P + RSP ++ + TP+ L++ +S +
Sbjct: 324 SPTRTVNLGKKSASISPIRNTG---KRSPKLSTAAKLRRSFTPTRNGSNLAR-KSSISP- 378
Query: 281 NKQTTPHKFLIKSPPSASKFQVKIKSPPVISSLSPTRSTNLSKKSPKLSTASKLRRSFSP 340
K+ T FL SP F K KSP +S+SPTR N KS KLSTA+K RRSFSP
Sbjct: 379 -KRVTLQAFL--SPTRNGNF-CK-KSPK--ASISPTRVCN---KSQKLSTAAKFRRSFSP 428
Query: 341 SRLANRLVSPLKSRK 355
SRLA R VSP+KSRK
Sbjct: 429 SRLAMRFVSPMKSRK 443
>UNIPROTKB|E1BQL2 [details] [associations]
symbol:E1BQL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
GO:GO:0006397 GO:GO:0071013 Gene3D:1.20.1390.10 SUPFAM:SSF101233
IPI:IPI00573813 GeneTree:ENSGT00650000093061 EMBL:AADN02043953
EMBL:AADN02043954 EMBL:AADN02043955 EMBL:AADN02043956
EMBL:AADN02043957 EMBL:AADN02043958 EMBL:AADN02043959
EMBL:AADN02043960 EMBL:AADN02043961 EMBL:AADN02043962
Ensembl:ENSGALT00000001959 ArrayExpress:E1BQL2 Uniprot:E1BQL2
Length = 940
Score = 157 (60.3 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 72/258 (27%), Positives = 114/258 (44%)
Query: 122 REIVAAVATKTKKITIEDPKTPVTEKRNHRPNPENTELRVRRKKEKQNKLQSIRSESDSP 181
+E V AT I PK P +E P PE E+ R +K+ + + ++ SP
Sbjct: 229 KETVVQEATSNSDI----PKAPKSEP----PVPETKEISPERNSKKEREKEKEKTRQRSP 280
Query: 182 KRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPWTKKTVLFPNPLFRATPSQQQ 241
R +++SR + SP + +R + SPR +P ++ P+P R P +
Sbjct: 281 TRSKSRSRSRSR-SPSH--SRPRRRHRSRSRSYSPRRRPSPRRR---PSPRRRTPPRRMP 334
Query: 242 ---KFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITRNKQT--TPHKFLIKSPPS 296
+ ++RSPV R + LS SS S+ RSP K+T +P + + PS
Sbjct: 335 PPPRHRRSRSPVRRRRRSSASLSGSSSSSSS-SRSRSPPKKPPKRTVSSPPRKTRRLSPS 393
Query: 297 ASKFQVKIK-SPPVISSLSPTRSTNLSKKSPKLST-ASKLRRSFSPSRLANR--LVSPLK 352
AS + + + SPP P RS +P+ S A K R S SP R + + L++P
Sbjct: 394 ASPPRRRHRPSPPASPPPKPRRSP-----TPQQSNRARKSRGSVSPGRASGKSFLLAP-- 446
Query: 353 SRKTVQKCDGQMSGLKQR 370
K+ +K + K R
Sbjct: 447 KHKSTEKRESPSPAPKPR 464
>UNIPROTKB|Q5ZMJ9 [details] [associations]
symbol:SRRM1 "Serine/arginine repetitive matrix protein 1"
species:9031 "Gallus gallus" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR002483 Pfam:PF01480
PROSITE:PS51025 SMART:SM00311 GO:GO:0005634 GO:GO:0008380
GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233 EMBL:AJ719385
IPI:IPI00573813 RefSeq:NP_001026665.1 UniGene:Gga.4399
ProteinModelPortal:Q5ZMJ9 SMR:Q5ZMJ9 STRING:Q5ZMJ9 PRIDE:Q5ZMJ9
GeneID:428216 KEGG:gga:428216 CTD:10250 eggNOG:NOG330576
HOVERGEN:HBG054044 InParanoid:Q5ZMJ9 KO:K13171 NextBio:20829263
Uniprot:Q5ZMJ9
Length = 888
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 66/225 (29%), Positives = 99/225 (44%)
Query: 122 REIVAAVATKTKKITIEDPKTPVTEKRNHRPNPENTELRVRRKKEKQNKLQSIRSESDSP 181
+E V AT I PK P +E P PE E+ R +K+ + + ++ SP
Sbjct: 229 KETVVQEATSNSDI----PKAPKSEP----PVPETKEISPERNSKKEREKEKEKTRQRSP 280
Query: 182 KRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPWTKKTVLFPNPLFRATPSQQQ 241
R +++SR + SP + +R R SPR +P ++ P R P +
Sbjct: 281 TRSKSRSRSRSR-SPSHSRPRRRHRSRS-RRRPSPRRRPSPRRRT----PPRRMPPPPRH 334
Query: 242 KFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITRNKQT--TPHKFLIKSPPSASK 299
+ ++RSPV R + LS SS S+ RSP K+T +P + + PSAS
Sbjct: 335 R--RSRSPVRRRRRSSASLSGSSSSSSS-SRSRSPPKKPPKRTVSSPPRKTRRLSPSASP 391
Query: 300 FQVKIK-SPPVISSLSPTRSTNLSKKSPKLST-ASKLRRSFSPSR 342
+ + + SPP P RS +P+ S A K R S SP R
Sbjct: 392 PRRRHRPSPPASPPPKPRRSP-----TPQQSNRARKSRGSVSPGR 431
>UNIPROTKB|E1BP16 [details] [associations]
symbol:SRRM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR002483
Pfam:PF01480 PROSITE:PS51025 SMART:SM00311 GO:GO:0006397
GO:GO:0071013 Gene3D:1.20.1390.10 SUPFAM:SSF101233 CTD:10250
KO:K13171 GeneTree:ENSGT00650000093061 OMA:ILKAPKP
EMBL:DAAA02006406 EMBL:DAAA02006407 IPI:IPI00826704
RefSeq:XP_001252332.2 RefSeq:XP_002685753.2 UniGene:Bt.109560
Ensembl:ENSBTAT00000061408 GeneID:784123 KEGG:bta:784123
Uniprot:E1BP16
Length = 901
Score = 143 (55.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 74/251 (29%), Positives = 110/251 (43%)
Query: 103 PAMLVGETVGEILQATQFAREIVAAVATKTKKITIEDPKT-PVTEKRNHRPNPENTELRV 161
PA E E+ + + +E AT T I ++ PKT PV E + P+PE
Sbjct: 212 PAPEKKEKTPELPEPSVKVKEPSVQEATSTSDI-LKVPKTEPVLEPKE--PSPEKNS--- 265
Query: 162 RRKKEKQNKLQSIRSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPW 221
KKEK+ K + RS S S R R +SR P K +R + SPR +P
Sbjct: 266 --KKEKE-KTRP-RSRSRSKSRSRTRSRSPSHTRPRK-------RHRSRSRSYSPRRRPS 314
Query: 222 TKKTVLFPNPLFRATPSQQQ---KFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVI 278
++ P+P R P + + ++RSPV R + LS SS S+ RSP
Sbjct: 315 PRRR---PSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSS-SRSRSPPK 370
Query: 279 TRNKQTT-PHKFLIKSPPSASKFQVKIK-SPPVISSLSPTRSTNLSKKSPKLSTASKLRR 336
K+T+ P + + PSAS + + + SPP +P T S + + K R
Sbjct: 371 KPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPA----TPPPKTRHSPTPQQSNRTRKSRV 426
Query: 337 SFSPSRLANRL 347
S SP R + ++
Sbjct: 427 SVSPGRTSGKV 437
>UNIPROTKB|Q8IYB3 [details] [associations]
symbol:SRRM1 "Serine/arginine repetitive matrix protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR002483
Pfam:PF01480 PROSITE:PS51025 SMART:SM00311 EMBL:AF048977
GO:GO:0005829 GO:GO:0005654 GO:GO:0003677 GO:GO:0016607
Reactome:REACT_1675 GO:GO:0003723 TCDB:3.A.18.1.1 GO:GO:0006406
GO:GO:0016363 GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788
Gene3D:1.20.1390.10 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
EMBL:AL445686 SUPFAM:SSF101233 CTD:10250 HOVERGEN:HBG054044
KO:K13171 EMBL:AF419855 EMBL:AL445648 EMBL:BC036187 IPI:IPI00328293
IPI:IPI00647720 RefSeq:NP_005830.2 UniGene:Hs.18192 PDB:1MP1
PDBsum:1MP1 ProteinModelPortal:Q8IYB3 SMR:Q8IYB3 IntAct:Q8IYB3
MINT:MINT-1683977 STRING:Q8IYB3 PhosphoSite:Q8IYB3 DMDM:83305833
PaxDb:Q8IYB3 PRIDE:Q8IYB3 Ensembl:ENST00000323848 GeneID:10250
KEGG:hsa:10250 UCSC:uc001bjm.3 GeneCards:GC01P024958
H-InvDB:HIX0023530 H-InvDB:HIX0160039 HGNC:HGNC:16638 HPA:HPA049941
MIM:605975 neXtProt:NX_Q8IYB3 PharmGKB:PA38177 eggNOG:NOG242213
HOGENOM:HOG000231139 OrthoDB:EOG4DV5N4 PhylomeDB:Q8IYB3
ChiTaRS:SRRM1 EvolutionaryTrace:Q8IYB3 GenomeRNAi:10250
NextBio:38838 PMAP-CutDB:Q8IYB3 ArrayExpress:Q8IYB3 Bgee:Q8IYB3
CleanEx:HS_SRRM1 Genevestigator:Q8IYB3 GermOnline:ENSG00000133226
Uniprot:Q8IYB3
Length = 904
Score = 143 (55.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 70/251 (27%), Positives = 108/251 (43%)
Query: 103 PAMLVGETVGEILQATQFAREIVAAVATKTKKITIEDPKT-PVTEKRNHRPNPENTELRV 161
PA E E+ + + +E AT T I ++ PK P+ E + P+PE
Sbjct: 212 PAPEKKEKTPELPEPSVKVKEPSVQEATSTSDI-LKVPKPEPIPEPKE--PSPEKNS--- 265
Query: 162 RRKKEKQNKLQSIRSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPW 221
KKEK+ + RS S S R R +SR P + +R + SPR +P
Sbjct: 266 --KKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRP-------RRRHRSRSRSYSPRRRPS 316
Query: 222 TKKTVLFPNPLFRATPSQQQ---KFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVI 278
++ P+P R P + + ++RSPV R + LS SS S+ RSP
Sbjct: 317 PRRR---PSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSS-SRSRSPPK 372
Query: 279 TRNKQTT-PHKFLIKSPPSASKFQVKIK-SPPVISSLSPTRSTNLSKKSPKLSTASKLRR 336
K+T+ P + + PSAS + + + SPP +P T S + + K R
Sbjct: 373 KPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPA----TPPPKTRHSPTPQQSNRTRKSRV 428
Query: 337 SFSPSRLANRL 347
S SP R + ++
Sbjct: 429 SVSPGRTSGKV 439
>UNIPROTKB|E9PCT1 [details] [associations]
symbol:SRRM1 "Serine/arginine repetitive matrix protein 1"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 GO:GO:0006397 Gene3D:1.20.1390.10 EMBL:AL445686
SUPFAM:SSF101233 EMBL:AL445648 IPI:IPI00328293 HGNC:HGNC:16638
ChiTaRS:SRRM1 ProteinModelPortal:E9PCT1 SMR:E9PCT1 PRIDE:E9PCT1
Ensembl:ENST00000447431 UCSC:uc009vrh.1 OMA:ILKAPKP
ArrayExpress:E9PCT1 Bgee:E9PCT1 Uniprot:E9PCT1
Length = 916
Score = 140 (54.3 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 70/246 (28%), Positives = 105/246 (42%)
Query: 103 PAMLVGETVGEILQATQFAREIVAAVATKTKKITIEDPKT-PVTEKRNHRPNPENTELRV 161
PA E E+ + + +E AT T I ++ PK P+ E + P+PE
Sbjct: 212 PAPEKKEKTPELPEPSVKVKEPSVQEATSTSDI-LKVPKPEPIPEPKE--PSPEKNS--- 265
Query: 162 RRKKEKQNKLQSIRSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPW 221
KKEK+ + RS S S R R +SR P + +R + SPR +P
Sbjct: 266 --KKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRP-------RRRHRSRSRSYSPRRRPS 316
Query: 222 TKKTVLFPNPLFRATPSQQQ---KFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVI 278
++ P+P R P + + ++RSPV R + LS SS S+ RSP
Sbjct: 317 PRRR---PSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSS-SRSRSPPK 372
Query: 279 TRNKQTT-PHKFLIKSPPSASKFQVKIK-SPPVISSLSPTRSTNLSKKSPKLSTASKLRR 336
K+T+ P + + PSAS + + + SPP +P T S + + K R
Sbjct: 373 KPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPA----TPPPKTRHSPTPQQSNRTRKSRV 428
Query: 337 SFSPSR 342
S SP R
Sbjct: 429 SVSPGR 434
>UNIPROTKB|F1PZZ3 [details] [associations]
symbol:NEFH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005882 "intermediate filament" evidence=IEA]
GO:GO:0005882 GeneTree:ENSGT00690000102043 InterPro:IPR016044
InterPro:IPR018039 Pfam:PF00038 PROSITE:PS00226 InterPro:IPR010790
Pfam:PF07142 EMBL:AAEX03014791 Ensembl:ENSCAFT00000035381
Uniprot:F1PZZ3
Length = 1061
Score = 139 (54.0 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 83/322 (25%), Positives = 132/322 (40%)
Query: 55 SPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSLPAMLVGETVGEI 114
SP + + K+E+ K+ KSP+ K +P E + V E
Sbjct: 558 SPTEVKSPEKAKSPAKEEA---KSPVEAKSPE-KAKSPVKEEAKSPEKAKSPVKEEAKSP 613
Query: 115 LQATQFAREIVAAVATKTKKITIEDPKTPVTEKRNHRPNPENTELRVRRKKEKQNKLQSI 174
+A +E A K K E+ K+PV E+ +PE T+ V+ + + K +S
Sbjct: 614 EKAKSPVKE-EAKSPEKAKSPVKEEAKSPVKEEAK---SPEKTKSPVKEEAKSPEKAKS- 668
Query: 175 RSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPWTKKTVLFPNPLFR 234
++ SP ++ A+S K SP K E + + V K KK +P+
Sbjct: 669 PEKAKSPVKEEAKSPEKAK-SPVKEEAKSPEKAK---SPVKEEAKSPEKKA---KSPVKE 721
Query: 235 ATPSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKL-SKIRSPVITR----NKQTTPHKF 289
S + K +SPV K P +P ++ K K +SPV K +P K
Sbjct: 722 EAKSPE----KAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKE 777
Query: 290 LIKSPPSASKFQVKIKSPPVISSLSPTRSTNLSK-KSPKLSTASKLRRSFSPSRLANRLV 348
KSP A K K KSP + SP ++ + K KSP A ++ SP ++ + +
Sbjct: 778 EAKSPEKA-KSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKVKSPVK 836
Query: 349 SPLKS-RKTVQKCDGQMSGLKQ 369
K+ K V K + S +K+
Sbjct: 837 EETKAPEKEVTKKEEAKSPIKE 858
>UNIPROTKB|P12036 [details] [associations]
symbol:NEFH "Neurofilament heavy polypeptide" species:9606
"Homo sapiens" [GO:0008219 "cell death" evidence=IEA] [GO:0000226
"microtubule cytoskeleton organization" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0045110 "intermediate filament
bundle assembly" evidence=IEA] [GO:0060052 "neurofilament
cytoskeleton organization" evidence=IEA] [GO:0005883
"neurofilament" evidence=NAS] [GO:0007399 "nervous system
development" evidence=NAS] [GO:0030424 "axon" evidence=TAS]
[GO:0003674 "molecular_function" evidence=ND] GO:GO:0005739
GO:GO:0007399 GO:GO:0000226 GO:GO:0008219 eggNOG:NOG12793
HOGENOM:HOG000230977 HOVERGEN:HBG013015 GO:GO:0005883 GO:GO:0060052
InterPro:IPR016044 InterPro:IPR018039 Pfam:PF00038 PROSITE:PS00226
Orphanet:803 MIM:105400 GO:GO:0045110 EMBL:X15306 EMBL:X15307
EMBL:X15308 EMBL:X15309 EMBL:AF203032 EMBL:AB020652 EMBL:AK302660
EMBL:AC000035 EMBL:BC008648 EMBL:BC073969 IPI:IPI00386758
IPI:IPI00910602 PIR:S00979 RefSeq:NP_066554.2 UniGene:Hs.198760
ProteinModelPortal:P12036 SMR:P12036 IntAct:P12036 STRING:P12036
PhosphoSite:P12036 DMDM:226726294 UCD-2DPAGE:P12036 PaxDb:P12036
PRIDE:P12036 Ensembl:ENST00000310624 GeneID:4744 KEGG:hsa:4744
CTD:4744 GeneCards:GC22P029876 H-InvDB:HIX0016351 HGNC:HGNC:7737
HPA:CAB007786 MIM:162230 neXtProt:NX_P12036 PharmGKB:PA31540
InParanoid:P12036 KO:K04574 OrthoDB:EOG4NS3BW GenomeRNAi:4744
NextBio:18288 ArrayExpress:P12036 Bgee:P12036 CleanEx:HS_NEFH
Genevestigator:P12036 GermOnline:ENSG00000100285 InterPro:IPR010790
Pfam:PF07142 Uniprot:P12036
Length = 1026
Score = 137 (53.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 81/316 (25%), Positives = 131/316 (41%)
Query: 77 KNATPRKSPK---GKFPAPAGGEWRGMSLPAMLVGETVGEILQATQFAREIVAAVAT--K 131
K+ KSP+ K PA + S PA ++ E + + A V + K
Sbjct: 525 KSPAEAKSPEKEEAKSPAEVKSPEKAKS-PAKEEAKSPPEAKSPEKEEAKSPAEVKSPEK 583
Query: 132 TKKITIEDPKTPVTEKRNHRPNPENTELRVRRKKEKQNKLQSIRSESDSPKRQRAQSRIN 191
K E+ K+P K +PE + V K+E ++ +E+ SP ++ A+S
Sbjct: 584 AKSPAKEEAKSPAEAK-----SPEKAKSPV--KEEAKSP-----AEAKSPVKEEAKSPAE 631
Query: 192 FKVSPPKVIELDKENNRYLANRVSPRN-KPWTKKTVLFPNPLFRATPSQQQKFCKTRSPV 250
K SP K KE + SP K K+ P ++ + K +SPV
Sbjct: 632 VK-SPEKAKSPTKEEAKSPEKAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPV 690
Query: 251 IARDKQPLFLSTPSSQQQKL-SKIRSPVITR----NKQTTPHKFLIKSPPSA-SKFQVKI 304
A K P +P ++ K K +SPV K +P K K+P A S + +
Sbjct: 691 KAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEA 750
Query: 305 KSPPVISSLSPTRSTNLSKKSPKLSTASKLRRSFSPS-RLANRLVSPLKSR-KTVQKCDG 362
KSP + SP ++ L KSP+ T +K + SP+ + + SP+K K+ +K
Sbjct: 751 KSPE--KAKSPEKAKTLDVKSPEAKTPAK-EEARSPADKFPEKAKSPVKEEVKSPEKAKS 807
Query: 363 QMSGLKQRPTY-VPKR 377
+ + P +PK+
Sbjct: 808 PLKEDAKAPEKEIPKK 823
>UNIPROTKB|F1MSQ6 [details] [associations]
symbol:NEFH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060052 "neurofilament cytoskeleton organization"
evidence=IEA] [GO:0045110 "intermediate filament bundle assembly"
evidence=IEA] [GO:0005883 "neurofilament" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000786
"nucleosome" evidence=IEA] InterPro:IPR005819 PRINTS:PR00624
GO:GO:0005739 GO:GO:0000226 GO:GO:0003677
GeneTree:ENSGT00690000102043 GO:GO:0005883 GO:GO:0060052
InterPro:IPR016044 InterPro:IPR018039 Pfam:PF00038 PROSITE:PS00226
GO:GO:0006334 GO:GO:0000786 GO:GO:0045110 InterPro:IPR010790
Pfam:PF07142 EMBL:DAAA02045602 IPI:IPI00733059
Ensembl:ENSBTAT00000029508 OMA:EGTANND Uniprot:F1MSQ6
Length = 1082
Score = 129 (50.5 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 81/333 (24%), Positives = 132/333 (39%)
Query: 55 SPRSTRGYLRTSLRCKQESLRIKNATPRKSP-KGKFPAPAGGEWRGMSLPAMLVGETVGE 113
SP + ++ + Q+ K+ KSP K K P A + S P V E
Sbjct: 504 SPEKAKSPVKEEAKSPQKE-EAKSPAEVKSPEKAKSPVEAKSPEKAKS-P-------VKE 554
Query: 114 ILQATQFAREIVAAVAT-KTKKITIEDPKTPVTEKRN-HRPNPENTELRVRRKKEKQNKL 171
++ + A+ V A + K K E+ K+P K +PE E + K + K
Sbjct: 555 EAKSPEKAKSPVEAKSPEKAKSPMKEEAKSPEKVKSPVEAKSPEKEEAKSPEKAKSPEKA 614
Query: 172 QS-IRSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRN-KPWTKKTVLFP 229
+S ++ E+ SP ++A+S + K SP K E + SP K K+ P
Sbjct: 615 KSPVKEEAKSP--EKAKSPVEAK-SPVKEEAKSPEKAKSPVEAKSPEKAKSPVKEEAKSP 671
Query: 230 NPLFRATPSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKL-SKIRSPVITR----NKQT 284
+ + K +SPV K P +P ++ K K +SPV K
Sbjct: 672 EKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAK 731
Query: 285 TPHKFLIKSP-----PSASKFQVKIKSPPVISSLSPTRSTNLSK---KSPKLSTASKLRR 336
+P K KSP P +K K KSP + SP ++ + K KSP+ + +
Sbjct: 732 SPVKEEAKSPEKAKSPVEAKSPEKAKSPAKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEE 791
Query: 337 SFSPSRLANRLVSPLKSRKTVQKCDGQMSGLKQ 369
+ SP + + KS + + + S +K+
Sbjct: 792 AKSPEKAKSPAKEEAKSPEKAKSPEKPKSPVKE 824
Score = 123 (48.4 bits), Expect = 0.00040, P = 0.00040
Identities = 59/246 (23%), Positives = 105/246 (42%)
Query: 111 VGEILQATQFAREIVAAVATKTKKITIEDPKTPVTEKRNHRPNPENTELRVRRKKEKQNK 170
V E + Q E+ + K+ E K+P E+ +PE E + + + K
Sbjct: 451 VEEQTEEVQVTEEVTEEEEKEAKEEEGEAVKSPPAEEA---ASPEKEEAKSPAEAKSPEK 507
Query: 171 LQS-IRSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPWTKKTVLFP 229
+S ++ E+ SP+++ A+S K SP K + + A SP K K
Sbjct: 508 AKSPVKEEAKSPQKEEAKSPAEVK-SPEKAKSPVEAKSPEKAK--SPV-KEEAKSPEKAK 563
Query: 230 NPLFRATPSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKL-SKIRSPVITRNKQTTPHK 288
+P+ +P + + K + + K P+ +P ++ K K +SP K +P K
Sbjct: 564 SPVEAKSPEKAKSPMKEEAKSPEKVKSPVEAKSPEKEEAKSPEKAKSP----EKAKSPVK 619
Query: 289 FLIKSPPSASKFQVKIKSPPVISSLSPTRSTN-LSKKSPKLSTASKLRRSFSPSRLANRL 347
KSP A K V+ KSP + SP ++ + + KSP+ + + + SP + + +
Sbjct: 620 EEAKSPEKA-KSPVEAKSPVKEEAKSPEKAKSPVEAKSPEKAKSPVKEEAKSPEKAKSPV 678
Query: 348 VSPLKS 353
KS
Sbjct: 679 KEEAKS 684
>ZFIN|ZDB-GENE-070402-1 [details] [associations]
symbol:setx "senataxin" species:7955 "Danio rerio"
[GO:0006302 "double-strand break repair" evidence=IEA]
InterPro:IPR026121 ZFIN:ZDB-GENE-070402-1 GO:GO:0006302
InterPro:IPR024481 Pfam:PF12726 GeneTree:ENSGT00580000081652
PANTHER:PTHR10887:SF15 EMBL:CU927918 IPI:IPI00481119
Ensembl:ENSDART00000082314 Ensembl:ENSDART00000149777
Uniprot:E7FBJ2
Length = 2368
Score = 131 (51.2 bits), Expect = 0.00013, P = 0.00013
Identities = 68/300 (22%), Positives = 120/300 (40%)
Query: 67 LRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSLPAMLVGETVGEILQATQFAREIVA 126
LR + +KN +P +SP P G ++ +S + ET + A A ++
Sbjct: 824 LRSSYKECTVKNKSP-ESPV--MPESPGRDYDDLSESQVFEFETQQYVASAWDNA-DLDG 879
Query: 127 AVATKT-KKITIEDPKTPVTEKRNHRPNPENTEL----RVRRK-KEKQNKLQSIRSESDS 180
+V TK K I P+ T TEL + R ++ + K++ + +
Sbjct: 880 SVLTKNLKSDRILKPQLDETPNEASPSWSSETELVPDEDIERACQQAEEKIRQQQPRKPA 939
Query: 181 PKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPWTKKTVLFPNPL----FRAT 236
+ +R ++ K+ P + E + + + + +++ S K W K P PL + T
Sbjct: 940 DEMERDYKQVEEKIRPQQTRE-NSDVHEF-SSKASSTTKSWDKFAK--PKPLKTKVTKTT 995
Query: 237 PSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITRNKQTTPHKFLIKSPPS 296
PS ++ + + PV+ P + + P + TTP + S S
Sbjct: 996 PSDKRDHLQVKKPVLIDALAQKIRRHPWKRSSTSEDMEEP----SSSTTPSSSAVSSTSS 1051
Query: 297 ASKFQVKIKSPPVISSL-SPTRSTNLSKKSPKLSTASKLRRSFSPSRLANRLVSPLKSRK 355
+S S P SS+ SP S + S+ +P + K+R+ P A RL K RK
Sbjct: 1052 SSSSS---SSTPSSSSITSPYFSASTSRGTPAIVPPKKVRKIAEPESTAERLGLKKKERK 1108
>UNIPROTKB|A9Z1X7 [details] [associations]
symbol:SRRM1 "Serine/arginine repetitive matrix protein 1"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 GO:GO:0006397 Gene3D:1.20.1390.10 EMBL:AL445686
SUPFAM:SSF101233 HOVERGEN:HBG054044 EMBL:AL445648 IPI:IPI00328293
UniGene:Hs.18192 HGNC:HGNC:16638 OrthoDB:EOG4DV5N4 ChiTaRS:SRRM1
SMR:A9Z1X7 STRING:A9Z1X7 Ensembl:ENST00000374389 Uniprot:A9Z1X7
Length = 913
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 57/198 (28%), Positives = 85/198 (42%)
Query: 152 PNPENTELRVRRKKEKQNKLQSIRSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLA 211
P P+ KKEK+ + RS S S R R +SR SP + +R
Sbjct: 254 PEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSR-----SPSHTRPRRRHRSRS-R 307
Query: 212 NRVSPRNKPWTKKTVLFPNPLFRATPSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKLS 271
R SPR +P ++ P R P + + ++RSPV R + LS SS S
Sbjct: 308 RRPSPRRRPSPRRRT----PPRRMPPPPRHR--RSRSPVRRRRRSSASLSGSSSSSSS-S 360
Query: 272 KIRSPVITRNKQTT-PHKFLIKSPPSASKFQVKIK-SPPVISSLSPTRSTNLSKKSPKLS 329
+ RSP K+T+ P + + PSAS + + + SPP +P T S + +
Sbjct: 361 RSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPA----TPPPKTRHSPTPQQSN 416
Query: 330 TASKLRRSFSPSRLANRL 347
K R S SP R + ++
Sbjct: 417 RTRKSRVSVSPGRTSGKV 434
>UNIPROTKB|J9P010 [details] [associations]
symbol:NEFH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005882 "intermediate filament" evidence=IEA]
GO:GO:0005882 GeneTree:ENSGT00690000102043 InterPro:IPR016044
InterPro:IPR018039 Pfam:PF00038 PROSITE:PS00226 InterPro:IPR010790
Pfam:PF07142 EMBL:AAEX03014791 Ensembl:ENSCAFT00000050181
Uniprot:J9P010
Length = 1017
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 70/298 (23%), Positives = 125/298 (41%)
Query: 71 QESLRIKNATPRKSPKGKFPAPAGGEWRGMSLPAMLVGETVGEILQATQFAREIVAAVAT 130
+E + A SP+ K +PA E + + A + + + + + + V
Sbjct: 489 EEETKSPPAEEAASPEKKAKSPAKEEAKS-PVEAKSPEKAKSPVKEEAKSPEKAKSPVKE 547
Query: 131 KTKKITIEDPKTPVTEKRNHRPNPENTELRVRRKKEKQNKLQSIRSESDSPKRQRAQSRI 190
+ K + E K+PV E+ +PE + V+ + + K +S E+ SP++ ++ +
Sbjct: 548 EAK--SPEKAKSPVKEEAK---SPEKAKSPVKEEAKSPEKAKS-PEEAKSPEKAKSPVKE 601
Query: 191 NFKVSPPKVIELDKENNRYLANRVSPRN-KPWTKKTVLFPNPLFRATPSQQQKFCKTRSP 249
K SP K KE + SP K K+ P + + K +SP
Sbjct: 602 EAK-SPEKTKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSP 660
Query: 250 VIARDKQPLFLSTPSSQQQKL-SKIRSPVITRNKQTTPHKFLIKSP-PSASKFQVKIKSP 307
V K P +P ++ K K +SPV + + +P K KSP +K K KSP
Sbjct: 661 VKEEAKSPEKAKSPVKEEAKSPEKAKSPV--KEEAKSPEK--AKSPVKEEAKSPEKAKSP 716
Query: 308 PVISSLSPTRSTNLSK---KSPKLSTASKLRRSFSPSRLAN--RLVSPLKSR-KTVQK 359
+ SP ++ + K KSP+ + + + SP + + + SP+K K+ +K
Sbjct: 717 VKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEK 774
>WB|WBGene00006820 [details] [associations]
symbol:unc-89 species:6239 "Caenorhabditis elegans"
[GO:0005089 "Rho guanyl-nucleotide exchange factor activity"
evidence=IEA;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0035023 "regulation of Rho protein signal transduction"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006468 "protein
phosphorylation" evidence=IEA] [GO:0005543 "phospholipid binding"
evidence=IEA] [GO:0005021 "vascular endothelial growth
factor-activated receptor activity" evidence=IEA] [GO:0005887
"integral to plasma membrane" evidence=IEA] [GO:0048010 "vascular
endothelial growth factor receptor signaling pathway" evidence=IEA]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA]
[GO:0016773 "phosphotransferase activity, alcohol group as
acceptor" evidence=IEA] [GO:0004713 "protein tyrosine kinase
activity" evidence=IEA] [GO:0040011 "locomotion" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0071688 "striated muscle myosin
thick filament assembly" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0031672 "A band" evidence=IDA]
[GO:0017048 "Rho GTPase binding" evidence=IPI] [GO:0030241
"skeletal muscle myosin thick filament assembly" evidence=IMP]
[GO:0031034 "myosin filament assembly" evidence=IMP] [GO:0031430 "M
band" evidence=IDA] [GO:0019902 "phosphatase binding" evidence=IPI]
InterPro:IPR000219 InterPro:IPR000719 InterPro:IPR001452
InterPro:IPR001849 InterPro:IPR003961 InterPro:IPR007110
InterPro:IPR009134 InterPro:IPR011009 Pfam:PF00041 Pfam:PF00069
Pfam:PF00621 PRINTS:PR01832 PROSITE:PS00107 PROSITE:PS00108
PROSITE:PS00741 PROSITE:PS50002 PROSITE:PS50003 PROSITE:PS50010
PROSITE:PS50011 PROSITE:PS50835 PROSITE:PS50853 SMART:SM00060
SMART:SM00233 SMART:SM00325 SMART:SM00326 GO:GO:0005524
GO:GO:0005887 Gene3D:2.60.40.10 InterPro:IPR013783 GO:GO:0031430
GO:GO:0016477 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
eggNOG:COG0515 SUPFAM:SSF49265 SUPFAM:SSF56112 InterPro:IPR003599
SMART:SM00409 InterPro:IPR003598 SMART:SM00408 GO:GO:0010171
SUPFAM:SSF50044 GO:GO:0000910 GO:GO:0005089 Gene3D:1.20.900.10
SUPFAM:SSF48065 GO:GO:0035023 InterPro:IPR013098 Pfam:PF07679
MEROPS:I43.001 GO:GO:0048010 GO:GO:0030241 InterPro:IPR007850
Pfam:PF05177 GO:GO:0005021 GO:GO:0038084
GeneTree:ENSGT00700000104014 EMBL:U33058 EMBL:FO080458
EMBL:AY724774 EMBL:AY714779 PIR:T29757 RefSeq:NP_001020984.1
RefSeq:NP_001020985.1 RefSeq:NP_001020988.1 RefSeq:NP_001020989.1
RefSeq:NP_001020990.1 UniGene:Cel.7125 PDB:1FHO PDBsum:1FHO
ProteinModelPortal:O01761 SMR:O01761 MINT:MINT-1090274
STRING:O01761 PaxDb:O01761 PRIDE:O01761 EnsemblMetazoa:C09D1.1b
GeneID:171990 KEGG:cel:CELE_C09D1.1 UCSC:C09D1.1g CTD:3346201
WormBase:C09D1.1a WormBase:C09D1.1b WormBase:C09D1.1c
WormBase:C09D1.1d WormBase:C09D1.1e WormBase:C09D1.1f
WormBase:C09D1.1g InParanoid:O01761 OMA:DQAEYKC
EvolutionaryTrace:O01761 NextBio:873555 ArrayExpress:O01761
Uniprot:O01761
Length = 8081
Score = 132 (51.5 bits), Expect = 0.00037, P = 0.00037
Identities = 75/321 (23%), Positives = 131/321 (40%)
Query: 55 SPRS-TRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSLPAMLVGETVGE 113
SP S T+ S K+ +K +P KSP K +P E + + + E +
Sbjct: 1436 SPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPE----DVKSPVKKEKSPD 1491
Query: 114 ILQATQFARE--IVAAVATKTKKITIEDPKTPVTEKRNHRPNPENTELRVRRKKEKQNKL 171
+ + E I T T ++T E ++ + K+ P + + + KK+K +
Sbjct: 1492 ATNIVEVSSETTIEKTETTMTTEMTHESEESRTSVKKEKTPEKVDEKPKSPTKKDKSPE- 1550
Query: 172 QSIRSESDSP-KRQRAQSRINFKVSPPKVIELDKEN----NRYLANRV-SPRNKPWTKKT 225
+SI E SP K++++ ++ K + P E E + N V SP K + +
Sbjct: 1551 KSITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEK 1610
Query: 226 VLFPNPLFRATPSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITRNKQTT 285
+ S ++ K +SP ++K P +T + K +SP K T+
Sbjct: 1611 SVVEELKSPKEKSPEKADDKPKSPT-KKEKSPEKSAT-EDVKSPTKKEKSPEKVEEKPTS 1668
Query: 286 PHKFLIKSPPSASKFQVKI-----KSPPVISSLSPTRSTNLSKKSPKLSTASKLR--RSF 338
P K SP + +VK KSP + P T +KSP+ S +++ +
Sbjct: 1669 PTK-KESSPTKKTDDEVKSPTKKEKSPQTVEE-KPASPTK-KEKSPEKSVVEEVKSPKEK 1725
Query: 339 SPSRLANRLVSPLKSRKTVQK 359
SP + + SP K K+ +K
Sbjct: 1726 SPEKAEEKPKSPTKKEKSPEK 1746
>DICTYBASE|DDB_G0289193 [details] [associations]
symbol:H2Av2 "histone H2A domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000786 "nucleosome"
evidence=IEA] InterPro:IPR002119 InterPro:IPR007125
InterPro:IPR009072 Pfam:PF00125 PRINTS:PR00620 PROSITE:PS00046
SMART:SM00414 dictyBase:DDB_G0289193 GO:GO:0005634 GO:GO:0003677
GenomeReviews:CM000154_GR Gene3D:1.10.20.10 SUPFAM:SSF47113
EMBL:AAFI02000131 GO:GO:0006334 GO:GO:0000786 eggNOG:COG5262
RefSeq:XP_636330.1 ProteinModelPortal:Q54HV9 PRIDE:Q54HV9
EnsemblProtists:DDB0220642 GeneID:8627003 KEGG:ddi:DDB_G0289193
InParanoid:Q54HV9 Uniprot:Q54HV9
Length = 286
Score = 115 (45.5 bits), Expect = 0.00043, P = 0.00043
Identities = 55/192 (28%), Positives = 86/192 (44%)
Query: 191 NFKVSPPKVIELDKENNRYLANRVSPRNKPWTK------KTVLFPNPLFRA-TPSQQQKF 243
N ++ P + K+NN+ ++ +P P+ KT F N F++ TP + Q
Sbjct: 9 NNSINEPIKQQETKQNNK--SSHKTPHKPPYLARAKFQPKTSSFSNSSFQSSTPPKPQIA 66
Query: 244 CKTRSPVIARDKQPLF----LSTPSSQQQKLSKIRSPVITRNKQTTPHKFLIKSPPSASK 299
K+ SP ++ K LS+PS Q K S SP + + P + +KSP S+S
Sbjct: 67 LKSPSPSPSQPKTSSSSYSSLSSPSPSQPKTS---SPSLPSSTPPKPRQIALKSPSSSSS 123
Query: 300 FQVKIKSPPVIS--SLSPTRSTNLSKKSPKLSTASKLRRSFSPSRLANRLVSPL--KSRK 355
Q K S S S +P + ++ KSP ST K SP + + SP K +K
Sbjct: 124 SQPKTSSSSYSSLPSSTPPKPQHIELKSP--STVKK-----SP--IVKKTNSPKGSKFKK 174
Query: 356 TVQKCDGQMSGL 367
T++ +GL
Sbjct: 175 TIRSSRSTRAGL 186
>UNIPROTKB|E1BQL1 [details] [associations]
symbol:E1BQL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233
GeneTree:ENSGT00650000093061 EMBL:AADN02043953 EMBL:AADN02043954
EMBL:AADN02043955 EMBL:AADN02043956 EMBL:AADN02043957
EMBL:AADN02043958 EMBL:AADN02043959 EMBL:AADN02043960
EMBL:AADN02043961 EMBL:AADN02043962 IPI:IPI00682553
Ensembl:ENSGALT00000001960 ArrayExpress:E1BQL1 Uniprot:E1BQL1
Length = 553
Score = 119 (46.9 bits), Expect = 0.00047, P = 0.00047
Identities = 64/249 (25%), Positives = 108/249 (43%)
Query: 109 ETVGEILQATQFAREIVAAVATKTKKITIEDPKTPVTEKRNHRPNPENTELRVRRKKEKQ 168
E +GE+ A+E +A + T +E K + +++ +PE + R+KEK+
Sbjct: 100 EFMGELWPLLLSAQENIAGIPTAF----LELKKEEIKQRQTKEISPERNSKK-EREKEKE 154
Query: 169 NKLQSIRSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPWTKKTVLF 228
Q RS + S R R++SR SP + +R + SPR +P ++
Sbjct: 155 KTRQ--RSPTRSKSRSRSRSR-----SPSH--SRPRRRHRSRSRSYSPRRRPSPRRR--- 202
Query: 229 PNPLFRATPSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITRNKQTTPHK 288
P+P R TP ++ P R + P+ S+ +KL R ++++
Sbjct: 203 PSPR-RRTPPRRMP----PPPRHRRSRSPV--RRLQSKDEKLK--HKDEYHRRRRSSASL 253
Query: 289 FLIKSPPSASKFQVKIKSPPVISSLSPTRSTNLSKK--SPKLSTASKLRRSFSPSRLANR 346
S S+S+ + K PP + SP R T++ ++ SP A + RRS SP R
Sbjct: 254 SGSSSSSSSSRSRSPPKKPPKRTVSSPPRKTHVDRRRRSPSPPPARR-RRSPSPPPPPRR 312
Query: 347 LVSPLKSRK 355
SP R+
Sbjct: 313 RRSPSLPRR 321
>TAIR|locus:2127786 [details] [associations]
symbol:AT4G32420 species:3702 "Arabidopsis thaliana"
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006457
"protein folding" evidence=IEA;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR002130 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 GO:GO:0006457 EMBL:CP002687
KO:K01802 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 OMA:RRTGNSA
IPI:IPI00537765 RefSeq:NP_001190889.1 RefSeq:NP_194968.2
UniGene:At.27622 ProteinModelPortal:F4JUB1 SMR:F4JUB1 PRIDE:F4JUB1
EnsemblPlants:AT4G32420.1 EnsemblPlants:AT4G32420.3 GeneID:829377
KEGG:ath:AT4G32420 Uniprot:F4JUB1
Length = 837
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 73/258 (28%), Positives = 110/258 (42%)
Query: 144 VTEKRNHRPNPENTELRVRRKKEKQNKLQSIR--SESD---SPKRQRAQSRINFKVSPPK 198
+T R P E VRR K +R E D SP + ++S + SP +
Sbjct: 426 LTNSRRESPGSEEKGRHVRRSPTKSVSRSPVRVKKERDISRSPSKSLSRSPLR---SPKR 482
Query: 199 VIELDKENNRYLANRVSPRNKPW--TKKTVLFPNPLFRATPSQQQKFCKTRSPVIARDKQ 256
VI R +A SP P + L PL R++ + RS + +
Sbjct: 483 VISRSPVRGR-IAR--SPSRSPVRSASRGSLGRGPLRRSSRRSPSR-SPVRSSRRSLSRS 538
Query: 257 PLFLSTPSSQQQ--KLSKIRSPVITRNKQTTPHKFLIKSPPSASKFQVKIKSPPVIS--- 311
P+ LS S + +LS+ RS ++R+ +P K + +SP +S+ V +SP S
Sbjct: 539 PIQLSRRSLSRSPTRLSR-RS--LSRSPIRSPRKSVSRSPVRSSRKSVS-RSPVRSSRRR 594
Query: 312 -SLSPTRSTNLSKKSPKLSTASKLRRSFS--PSRLANRLVS--PLKSRKTVQKCDGQMSG 366
S SP RS S+KS S RRS S P RL+ R +S P++ R+ + +
Sbjct: 595 ISRSPVRS---SRKSVSRSPIRLSRRSISRSPIRLSRRSISRSPVRGRRRISRSPVPARR 651
Query: 367 LKQRPTYVP--KRFSMGR 382
RP P +R S+ R
Sbjct: 652 RSVRPRSPPPDRRRSLSR 669
>UNIPROTKB|F1ND22 [details] [associations]
symbol:F1ND22 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000226 "microtubule cytoskeleton organization"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005883
"neurofilament" evidence=IEA] [GO:0045110 "intermediate filament
bundle assembly" evidence=IEA] [GO:0060052 "neurofilament
cytoskeleton organization" evidence=IEA] GO:GO:0005739
GO:GO:0000226 GeneTree:ENSGT00690000102043 GO:GO:0005883
GO:GO:0060052 InterPro:IPR016044 InterPro:IPR018039 Pfam:PF00038
PROSITE:PS00226 GO:GO:0045110 EMBL:AADN02050478 EMBL:AADN02050476
EMBL:AADN02050477 IPI:IPI00572764 Ensembl:ENSGALT00000013122
OMA:AKSPPEI Uniprot:F1ND22
Length = 950
Score = 120 (47.3 bits), Expect = 0.00074, P = 0.00074
Identities = 73/299 (24%), Positives = 125/299 (41%)
Query: 57 RSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSLPAMLVGETVGEILQ 116
R+T+ + LR Q+ L +K A + + G E+R + M+ V + +
Sbjct: 321 RNTKWEMAAQLREYQDLLNVKMALDIEIAAYR-KLLEGEEYRIETGFGMVSYPEV--VPK 377
Query: 117 ATQFAREIVAAVATKTKKITIEDPKTPVTEKRNH--RPNPENTELRVRRKKEKQNKLQSI 174
A A I K K + + +T + E++ + E TE K+ ++ K +
Sbjct: 378 APSIAANIKVKSEEKIKVVEKSEKETVIVEEQTEEIQVTEEVTEEEEAEKEAEEEKAEEE 437
Query: 175 RSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPWT--KKTVLFP--- 229
+ E + +++ SP K KE + A + SP KP T K+ P
Sbjct: 438 KEEEKAEPEGEEEAK-----SPEKPESPTKEEAKSPAVK-SPE-KPSTPSKEEAKSPTVK 490
Query: 230 NPLFRATPSQQQKFCKTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITRNKQTTPHKF 289
+P +TPS+++ +SP + ++P STPS ++ K ++SP K +TP K
Sbjct: 491 SPEKPSTPSKEE----AKSPTVKSPEKP---STPSKEEDKSPAVKSP----EKPSTPSKE 539
Query: 290 LIKSP-------PSASKFQVKIKSPPVISSLSPTRSTNLSKKSPKLSTASKLRRSFSPS 341
KSP PS + + KSP V S P + KSP + + K + P+
Sbjct: 540 EAKSPAVKSPEKPSTPSKE-EAKSPAVKSPEKPAPPSKEEAKSPAVKSPEKXKSPEKPA 597
>UNIPROTKB|Q9UQ35 [details] [associations]
symbol:SRRM2 "Serine/arginine repetitive matrix protein 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0070742 "C2H2 zinc finger domain
binding" evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR024945 SMART:SM01104 GO:GO:0016607
GO:GO:0003723 EMBL:CH471112 eggNOG:NOG12793 GO:GO:0015030
GO:GO:0000398 GO:GO:0071013 InterPro:IPR013170 Pfam:PF08312
EMBL:AC092117 GO:GO:0070742 EMBL:AB015644 EMBL:AB016087
EMBL:AB016089 EMBL:AB016090 EMBL:AB016091 EMBL:AB016092
EMBL:AF201422 EMBL:AB002322 EMBL:BC007752 EMBL:BC009062
EMBL:BC041155 EMBL:BC070050 EMBL:AF161338 IPI:IPI00782992
IPI:IPI00784560 IPI:IPI00785023 RefSeq:NP_057417.3
UniGene:Hs.433343 ProteinModelPortal:Q9UQ35 SMR:Q9UQ35
IntAct:Q9UQ35 MINT:MINT-5006711 STRING:Q9UQ35 PhosphoSite:Q9UQ35
DMDM:143928063 PaxDb:Q9UQ35 PRIDE:Q9UQ35 Ensembl:ENST00000301740
GeneID:23524 KEGG:hsa:23524 UCSC:uc002crj.1 CTD:23524
GeneCards:GC16P002769 H-InvDB:HIX0194349 HGNC:HGNC:16639
HPA:HPA041411 MIM:606032 neXtProt:NX_Q9UQ35 PharmGKB:PA38178
HOVERGEN:HBG093999 InParanoid:Q9UQ35 KO:K13172 OMA:HTPSRRM
PhylomeDB:Q9UQ35 ChiTaRS:SRRM2 GenomeRNAi:23524 NextBio:45984
ArrayExpress:Q9UQ35 Bgee:Q9UQ35 Genevestigator:Q9UQ35
GermOnline:ENSG00000167978 Uniprot:Q9UQ35
Length = 2752
Score = 124 (48.7 bits), Expect = 0.00089, P = 0.00089
Identities = 99/400 (24%), Positives = 159/400 (39%)
Query: 2 VARTPPKQRK---------VLAPLNPVLLRETVKKVD-KCMARLQELQYTVTGGTKMISG 51
VARTP QR V +P E+ D K R Q + +G + +
Sbjct: 1528 VARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDS 1587
Query: 52 VS-LSPRSTRGYLRTSLRCKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSLPAMLVGET 110
S LSPR +R ++ K + + SP+ K PAP R S +
Sbjct: 1588 KSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGP 1647
Query: 111 VGEILQATQFAREIVAAVATKTK-KITIEDPKTPVT---EKRNHRPNPENTELRVRRKKE 166
E +T+ + E T + + +PKT +R+ R +PE T + R +
Sbjct: 1648 SPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTR-KARLSRR 1706
Query: 167 KQNKLQSIRSESDSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPRNKPWTKKTV 226
++ S + S +P R R VS P+ E + + R + SPR K T +
Sbjct: 1707 SRSASSSPETRSRTPPRHRRSP----SVSSPEPAEKSRSSRRR-RSASSPRTKT-TSRRG 1760
Query: 227 LFPNPLFRATPSQQQKFC--KTRSPVIARDKQPLFLSTPSSQQQKLSKIRSPVITRNKQT 284
P+P R + + KTR+ RD+ ST S++++ S+ RS V R +
Sbjct: 1761 RSPSPKPRGLQRSRSRSRREKTRT-TRRRDRSGSSQST--SRRRQRSRSRSRVTRRRRGG 1817
Query: 285 TPHKFLIKSPPSASKFQVKIKSPPVISSLSPT-RSTNLSKKSPKLSTASKLRRSFSPSRL 343
+ + +SP + + S PT R + S+ SP S+ R S + R
Sbjct: 1818 SGYHS--RSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHR- 1874
Query: 344 ANRLVSPLKSRKTVQKCDGQMSGLKQRP-TYVPKRFSMGR 382
+R +PL SR+ + +S + R T V +R S R
Sbjct: 1875 RSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSR 1914
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.128 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 383 383 0.00091 117 3 11 23 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 599 (64 KB)
Total size of DFA: 199 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.59u 0.09s 45.68t Elapsed: 00:00:02
Total cpu time: 45.59u 0.09s 45.68t Elapsed: 00:00:02
Start: Thu May 9 15:18:30 2013 End: Thu May 9 15:18:32 2013