BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016763
         (383 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q89AE1|TLDD_BUCBP Protein TldD homolog OS=Buchnera aphidicola subsp. Baizongia
           pistaciae (strain Bp) GN=tldD PE=3 SV=1
          Length = 483

 Score = 38.5 bits (88), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 17/132 (12%)

Query: 69  CKQESLRIKNATPRKSPKGKFPAPAGGEWRGMSLPAMLVGETVGEILQ-----------A 117
           C+   + + N + +++P G FP   G  W     P +L+ E VG  L+           A
Sbjct: 230 CEAARIALINLSAQEAPSGTFPVVLGSGW-----PGVLLHEAVGHGLEGDFNRQGTSVFA 284

Query: 118 TQFAREIVAAVATKTKKITIEDPKTPVTEKRNHRPNPENTELRVR-RKKEKQNKLQSIRS 176
            +  R++ + + T     T++D +  +T      P   N  ++    KK  Q+K  +   
Sbjct: 285 NKIGRQVASELCTIVDDGTLKDRRGSLTIDDEGTPGQYNILIKNGILKKYLQDKTNARLM 344

Query: 177 ESDSPKRQRAQS 188
           E D     R +S
Sbjct: 345 EMDLTGNGRRES 356


>sp|Q06704|IMH1_YEAST Golgin IMH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
           S288c) GN=IMH1 PE=1 SV=1
          Length = 911

 Score = 31.6 bits (70), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 165 KEKQNKLQSIRSES----DSPKRQRAQSRINFKVSPPKVIELDKENNRYLANRVSPR 217
           +EK N LQ+++S S    DS KRQ  +  +  K S  K++ L+ E N Y AN V  +
Sbjct: 593 QEKYNTLQNVKSNSNEHIDSIKRQCEELNVKLKESTKKILSLEDELNEY-ANIVQDK 648


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.128    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,911,879
Number of Sequences: 539616
Number of extensions: 5474264
Number of successful extensions: 16459
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 16171
Number of HSP's gapped (non-prelim): 397
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)