Query 016763
Match_columns 383
No_of_seqs 31 out of 33
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 02:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08258 WWamide: WWamide pept 24.7 30 0.00065 17.9 0.3 6 97-102 1-6 (7)
2 PF12960 DUF3849: Protein of u 20.1 22 0.00048 31.8 -1.2 20 213-232 79-98 (133)
3 COG4749 Uncharacterized protei 19.1 50 0.0011 31.4 0.8 19 37-55 138-156 (196)
4 smart00733 Mterf Mitochondrial 18.8 63 0.0014 19.1 1.0 24 17-40 7-30 (31)
5 PF09593 Pathogen_betaC1: Beta 18.2 42 0.00092 29.5 0.1 14 267-280 27-40 (117)
6 PF04220 YihI: Der GTPase acti 15.7 90 0.002 29.0 1.6 16 25-40 128-143 (169)
7 PF07208 DUF1414: Protein of u 14.5 2.8E+02 0.0061 21.1 3.7 15 102-116 7-21 (44)
8 PF07876 Dabb: Stress responsi 13.7 2.9E+02 0.0063 21.0 3.7 37 26-62 16-53 (97)
9 PRK05244 Der GTPase activator; 13.4 1.1E+02 0.0025 28.7 1.6 17 24-40 126-142 (177)
10 PF11851 DUF3371: Domain of un 13.0 1E+02 0.0023 27.5 1.2 26 313-339 99-126 (131)
No 1
>PF08258 WWamide: WWamide peptide; InterPro: IPR013271 This family contain neuropeptides, isolated from ganglia of Achatina fulica (Giant African snail). Each peptide has a Trp residue at both the N- and C-termini. Purified WWamide-1, -2 and -3 showed an inhibitory effect on the phasic contractions of the anterior byssus retractor muscle (ABRM) [].
Probab=24.66 E-value=30 Score=17.86 Aligned_cols=6 Identities=33% Similarity=1.282 Sum_probs=4.6
Q ss_pred cccCcc
Q 016763 97 WRGMSL 102 (383)
Q Consensus 97 Wr~mSl 102 (383)
|++|+.
T Consensus 1 Wk~Mav 6 (7)
T PF08258_consen 1 WKQMAV 6 (7)
T ss_pred Cccccc
Confidence 888874
No 2
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=20.10 E-value=22 Score=31.78 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=18.0
Q ss_pred ccCCCCCccccceeeccCcc
Q 016763 213 RVSPRNKPWTKKTVLFPNPL 232 (383)
Q Consensus 213 Rvsprnrpw~kKtvlfPnPl 232 (383)
|.||.|+-||+.+.+++++-
T Consensus 79 RfS~~NK~WAk~~~~~~d~~ 98 (133)
T PF12960_consen 79 RFSQDNKDWAKTIPVPEDKD 98 (133)
T ss_pred cCCHHHHHHHHcCCCCCCcc
Confidence 89999999999999988863
No 3
>COG4749 Uncharacterized protein conserved in archaea [Function unknown]
Probab=19.13 E-value=50 Score=31.43 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=16.6
Q ss_pred hhhhhhcCCceeeeeeecC
Q 016763 37 ELQYTVTGGTKMISGVSLS 55 (383)
Q Consensus 37 eLQ~Tvagg~kvvsgvsLS 55 (383)
.|-|+.+||++||.|-+|-
T Consensus 138 aL~~vAq~Ga~VikG~~Lp 156 (196)
T COG4749 138 ALNAVAQMGAKVIKGEQLP 156 (196)
T ss_pred HHHHHHhcCceeeccCcCc
Confidence 4789999999999998873
No 4
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=18.77 E-value=63 Score=19.10 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=19.1
Q ss_pred chHHHHHhHhhHHHHHHHhHhhhh
Q 016763 17 NPVLLRETVKKVDKCMARLQELQY 40 (383)
Q Consensus 17 Np~l~ret~~kvd~cmaRLQeLQ~ 40 (383)
+|.++....++++.++.-|+++-+
T Consensus 7 ~P~il~~~~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 7 FPQILGYSEKKLKPKVEFLKELGF 30 (31)
T ss_pred CcCcccccHHHhhHHHHHHHHcCC
Confidence 677787778888998888887654
No 5
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=18.20 E-value=42 Score=29.51 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.2
Q ss_pred hhhhccccCccccc
Q 016763 267 QQKLSKIRSPVITR 280 (383)
Q Consensus 267 Qqkf~kTrSPViar 280 (383)
|-+++.||||++++
T Consensus 27 ~i~l~ST~sP~l~k 40 (117)
T PF09593_consen 27 HIQLFSTRSPALIK 40 (117)
T ss_pred EEEEEECCChHHhe
Confidence 45678889999987
No 6
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=15.69 E-value=90 Score=29.05 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=12.8
Q ss_pred HhhHHHHHHHhHhhhh
Q 016763 25 VKKVDKCMARLQELQY 40 (383)
Q Consensus 25 ~~kvd~cmaRLQeLQ~ 40 (383)
-+-||+||+|+++|--
T Consensus 128 Q~yvD~~LdRi~~Lm~ 143 (169)
T PF04220_consen 128 QKYVDEKLDRIEELME 143 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3569999999999843
No 7
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=14.54 E-value=2.8e+02 Score=21.13 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=12.3
Q ss_pred cchHHHhhHHHHHHH
Q 016763 102 LPAMLVGETVGEILQ 116 (383)
Q Consensus 102 lPAmlvgetv~EIlq 116 (383)
|--|.+|.-|-.|+.
T Consensus 7 LsLMvLGN~vTniln 21 (44)
T PF07208_consen 7 LSLMVLGNMVTNILN 21 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 335999999999986
No 8
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=13.70 E-value=2.9e+02 Score=20.97 Aligned_cols=37 Identities=22% Similarity=0.533 Sum_probs=28.7
Q ss_pred hhHHHHHHHhHhhhhhhcCCceeeeeeecCccc-cccc
Q 016763 26 KKVDKCMARLQELQYTVTGGTKMISGVSLSPRS-TRGY 62 (383)
Q Consensus 26 ~kvd~cmaRLQeLQ~Tvagg~kvvsgvsLSprs-trgY 62 (383)
.++++-++.|.+|...+-|=..+--|.++++.. ..||
T Consensus 16 ~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~ 53 (97)
T PF07876_consen 16 EEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGY 53 (97)
T ss_dssp HHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCC
Confidence 445666889999998988877888899999986 4454
No 9
>PRK05244 Der GTPase activator; Provisional
Probab=13.41 E-value=1.1e+02 Score=28.68 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=13.4
Q ss_pred hHhhHHHHHHHhHhhhh
Q 016763 24 TVKKVDKCMARLQELQY 40 (383)
Q Consensus 24 t~~kvd~cmaRLQeLQ~ 40 (383)
--+-||+||+|+++|--
T Consensus 126 dQ~yvD~~LdRie~LM~ 142 (177)
T PRK05244 126 DQKWVDEKLDRIDELME 142 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34569999999999854
No 10
>PF11851 DUF3371: Domain of unknown function (DUF3371); InterPro: IPR021802 This entry represents a group of basic helix-loop-helix leucine zipper transcription factors found in chordata and known as the MiT/TFE family. They include MITF (microphthalmia-associated transcription factor) and its related family members TFE3, TFEB and TFEC []. This transcription factors heterodimerize with each other and recognise the same DNA sequences []. They recognise and bind E-box sequences (3'-CANNTG-5').; GO: 0006355 regulation of transcription, DNA-dependent
Probab=13.05 E-value=1e+02 Score=27.53 Aligned_cols=26 Identities=50% Similarity=0.548 Sum_probs=19.9
Q ss_pred cCCCccc--cccCCCCccccccccccccC
Q 016763 313 LSPTRST--NLSKKSPKLSTASKLRRSFS 339 (383)
Q Consensus 313 lsPtrp~--~~sk~sP~~StAsk~RrSFS 339 (383)
+||. .. .+|.-+|..|..+-+|.|||
T Consensus 99 LSP~-~sDPLLSs~SP~aSK~SSRRSSfS 126 (131)
T PF11851_consen 99 LSPL-GSDPLLSSMSPGASKTSSRRSSFS 126 (131)
T ss_pred CCCC-CCCcccccCCCCccccccCcCccc
Confidence 5565 21 26777899999999999998
Done!