Query 016763
Match_columns 383
No_of_seqs 31 out of 33
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 03:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g3t_A Vacuolar transporter ch 31.8 3 0.0001 38.6 -3.4 61 33-100 152-216 (295)
2 3g3o_A Vacuolar transporter ch 17.9 50 0.0017 32.7 2.0 65 31-102 219-289 (392)
3 4b6x_A AVRRPS4, avirulence pro 14.0 1.3E+02 0.0044 24.7 3.1 28 15-42 51-78 (90)
4 2x3m_A Hypothetical protein OR 11.7 1.8E+02 0.0062 26.7 3.7 29 100-128 167-202 (239)
5 3ocu_A Lipoprotein E; hydrolas 10.8 86 0.003 28.7 1.3 15 221-235 209-223 (262)
6 3pct_A Class C acid phosphatas 10.4 90 0.0031 28.5 1.3 15 221-235 209-223 (260)
7 1wi9_A Protein C20ORF116 homol 10.2 1.1E+02 0.0037 24.1 1.5 17 25-41 32-48 (72)
8 1l6n_A GAG polyprotein; matrix 9.4 1.1E+02 0.0036 29.4 1.4 23 15-38 45-67 (289)
9 2jpq_A UPF0352 protein VP2129; 9.1 3.4E+02 0.012 22.0 4.0 27 102-128 32-69 (83)
10 2gol_A Matrix protein P17 (MA) 8.5 1.7E+02 0.006 25.4 2.2 30 15-48 46-75 (133)
No 1
>3g3t_A Vacuolar transporter chaperone 4; polyphosphate polymerase, polyphosphate kinase, VTC complex, tunnel enzyme, membrane, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3g3q_A* 3g3r_A 3g3u_A
Probab=31.76 E-value=3 Score=38.61 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=41.9
Q ss_pred HHhHhhhhhhcCCceeeeeeecCcccccccccccccccc-cccccccCCCCCC-CCCCCCC--CCCcccccC
Q 016763 33 ARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQ-ESLRIKNATPRKS-PKGKFPA--PAGGEWRGM 100 (383)
Q Consensus 33 aRLQeLQ~Tvagg~kvvsgvsLSprstrgYlrtSlrckq-es~r~~~~a~k~s-p~~kf~~--~~~geWr~m 100 (383)
.-++|+||.+. .-.|-|.---.|-||.+-+.. ..|||-=|..-+. ....|.+ -++|.|.+|
T Consensus 152 ~l~~Ei~~~~~-------~~~L~P~~~~~Y~R~Af~~~~D~~vRIT~Dt~l~~~red~~d~~~r~~~~w~r~ 216 (295)
T 3g3t_A 152 ALASEIQYVML-------KKKLRPVVRSFYNRTAFQLPGDARVRISLDTELTMVREDNFDGVDRTHKNWRRT 216 (295)
T ss_dssp HHHHHHHHHHH-------HTTCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECCCTTSCCSSTTSSSCS
T ss_pred HHHHHHHHHHh-------hcCcceeEEEEEEEEEeEcCCCCCEEEEEecCceeeecccccccccCccccccc
Confidence 34678888743 335999999999999999998 8899965533332 2222322 256899985
No 2
>3g3o_A Vacuolar transporter chaperone 2; polyphosphate polymerase, polyphosphate kinase, VTC complex, tunnel enzyme, membrane, phosphoprotein; 2.10A {Saccharomyces cerevisiae}
Probab=17.95 E-value=50 Score=32.68 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=42.9
Q ss_pred HHHHhHhhhhhhcCCceeeeeeecCcccccccccccccccc-cccccccCCCCC-----CCCCCCCCCCCcccccCcc
Q 016763 31 CMARLQELQYTVTGGTKMISGVSLSPRSTRGYLRTSLRCKQ-ESLRIKNATPRK-----SPKGKFPAPAGGEWRGMSL 102 (383)
Q Consensus 31 cmaRLQeLQ~Tvagg~kvvsgvsLSprstrgYlrtSlrckq-es~r~~~~a~k~-----sp~~kf~~~~~geWr~mSl 102 (383)
.-.-++|+||. |.--.|-|.---.|-||.+-+.. ..|||-=|..-+ +--+.-|-.++++|+||-+
T Consensus 219 ~~ql~~Eiq~~-------i~~~~LqPvlrt~Y~RtAFq~p~D~~VRITfDtnL~~rrED~~D~~rp~R~~~~W~R~Di 289 (392)
T 3g3o_A 219 LEEDFSEIQNF-------IIKNELQPVFRTVYTRTAFQIPGDDKIRVTIDSNIVFIKEDSFDRERPIRDPNTWHRTDI 289 (392)
T ss_dssp HHHHHHHHHHH-------HHHTTCEEEEEEEEEEEEECCTTCCSEEEEEEEEEEEEECCCCSSSSCSSCTTSSSCSST
T ss_pred HHHHHHHHHHH-------HHhcCCceeEEEEEEEEEEECCCCCcEEEEEecCceEeeccccccccCCCCcccceeccc
Confidence 34557889998 43335899988999999999998 579994331111 1112223346679999854
No 3
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=13.99 E-value=1.3e+02 Score=24.69 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.9
Q ss_pred CcchHHHHHhHhhHHHHHHHhHhhhhhh
Q 016763 15 PLNPVLLRETVKKVDKCMARLQELQYTV 42 (383)
Q Consensus 15 ~LNp~l~ret~~kvd~cmaRLQeLQ~Tv 42 (383)
--||++|-.|-.-++|.-+-|-+||--+
T Consensus 51 eaNpaeIA~~~~~L~qAraDL~~l~r~~ 78 (90)
T 4b6x_A 51 EANPAEIANTSQQLRHARADLADLQRRF 78 (90)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999998544
No 4
>2x3m_A Hypothetical protein ORF239; unknown function; 1.45A {Pyrobaculum spherical virus}
Probab=11.73 E-value=1.8e+02 Score=26.72 Aligned_cols=29 Identities=41% Similarity=0.507 Sum_probs=22.3
Q ss_pred CccchHHHhhHHHHHHHH-------hhHHHHHHHHh
Q 016763 100 MSLPAMLVGETVGEILQA-------TQFAREIVAAV 128 (383)
Q Consensus 100 mSlPAmlvgetv~EIlqA-------SqFareIv~av 128 (383)
.|||+|-+|..+.=|-.| --+||+|.++|
T Consensus 167 iSl~t~elg~~~DIia~AkAkG~~~evv~R~~AE~v 202 (239)
T 2x3m_A 167 ISLTTMELGKVADIIAEAKAKGENPEVVAREIAEAV 202 (239)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred EecchhhhhhHHHHHHHHHhcCCCchHHHHHHHHHc
Confidence 699999999876655555 23688898887
No 5
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=10.77 E-value=86 Score=28.70 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=13.5
Q ss_pred cccceeeccCccccc
Q 016763 221 WTKKTVLFPNPLFRA 235 (383)
Q Consensus 221 w~kKtvlfPnPlF~s 235 (383)
|-.+-++||||.+-+
T Consensus 209 fG~~~ivlPNp~YG~ 223 (262)
T 3ocu_A 209 FGKTFIMLPNANYGG 223 (262)
T ss_dssp BTTTEEECCCSSCSH
T ss_pred hCCCEEEeCCCCccc
Confidence 889999999999855
No 6
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=10.42 E-value=90 Score=28.54 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=13.4
Q ss_pred cccceeeccCccccc
Q 016763 221 WTKKTVLFPNPLFRA 235 (383)
Q Consensus 221 w~kKtvlfPnPlF~s 235 (383)
|-.+-++||||.+-+
T Consensus 209 fG~~~ivlPNp~YG~ 223 (260)
T 3pct_A 209 FGKKFIVLPNTQYGD 223 (260)
T ss_dssp BTTTEEECCCCSCSH
T ss_pred hCCCEEEeCCCCcch
Confidence 889999999999854
No 7
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=10.16 E-value=1.1e+02 Score=24.08 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=13.7
Q ss_pred HhhHHHHHHHhHhhhhh
Q 016763 25 VKKVDKCMARLQELQYT 41 (383)
Q Consensus 25 ~~kvd~cmaRLQeLQ~T 41 (383)
.=+.+.|+.|+|+|+-.
T Consensus 32 ~l~t~~~i~RI~~Le~~ 48 (72)
T 1wi9_A 32 GLRTQDAINRIQDLLTE 48 (72)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHC
Confidence 34678999999999865
No 8
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=9.44 E-value=1.1e+02 Score=29.41 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=18.0
Q ss_pred CcchHHHHHhHhhHHHHHHHhHhh
Q 016763 15 PLNPVLLRETVKKVDKCMARLQEL 38 (383)
Q Consensus 15 ~LNp~l~ret~~kvd~cmaRLQeL 38 (383)
+|||.|+ ||.....|.|..||.+
T Consensus 45 alnpgLL-ET~eGC~qIi~qLqp~ 67 (289)
T 1l6n_A 45 AVNPGLL-ETSEGCRQILGQLQPS 67 (289)
T ss_dssp TSCGGGT-TSHHHHHHHHHTTHHH
T ss_pred ccCCCCc-chHHHHHHHHHHHhhh
Confidence 7999996 7888777777776654
No 9
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=9.09 E-value=3.4e+02 Score=21.99 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=20.0
Q ss_pred cchHHHhhHHHHHHH-----------HhhHHHHHHHHh
Q 016763 102 LPAMLVGETVGEILQ-----------ATQFAREIVAAV 128 (383)
Q Consensus 102 lPAmlvgetv~EIlq-----------ASqFareIv~av 128 (383)
|--|.+|.-|-.||. |.+||..+...|
T Consensus 32 LSLMvLGNmvTNlln~~V~~~qR~~iAe~Fa~AL~~Sv 69 (83)
T 2jpq_A 32 LTLMIAGNIATNVLNQRVAASQRKLIAEKFAQALMSSL 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHh
Confidence 445999999988886 556777666666
No 10
>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A
Probab=8.51 E-value=1.7e+02 Score=25.39 Aligned_cols=30 Identities=37% Similarity=0.539 Sum_probs=18.3
Q ss_pred CcchHHHHHhHhhHHHHHHHhHhhhhhhcCCcee
Q 016763 15 PLNPVLLRETVKKVDKCMARLQELQYTVTGGTKM 48 (383)
Q Consensus 15 ~LNp~l~ret~~kvd~cmaRLQeLQ~Tvagg~kv 48 (383)
+|||.|| ||-. -|-.-|..||=.+--|+.-
T Consensus 46 alnpgLL-ET~e---GC~qIl~qLqPal~TGSEe 75 (133)
T 2gol_A 46 AVNPGLL-ETSE---GCRQILGQLQPSLQTGSEE 75 (133)
T ss_dssp TBCGGGG-GSHH---HHHHHHHHHHHHHTTTCCT
T ss_pred ccCcchh-hhHH---HHHHHHHHhccccccccHH
Confidence 8999987 5554 4555555555555555543
Done!