Query 016764
Match_columns 383
No_of_seqs 183 out of 1581
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:35:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 4.7E-45 1E-49 355.3 31.5 273 99-382 2-275 (319)
2 TIGR00832 acr3 arsenical-resis 100.0 4.8E-42 1E-46 339.8 29.1 269 106-382 3-298 (328)
3 TIGR00841 bass bile acid trans 100.0 6.7E-37 1.5E-41 297.8 26.7 236 135-382 8-247 (286)
4 PF13593 DUF4137: SBF-like CPA 100.0 2.1E-33 4.5E-38 276.6 28.9 266 109-381 1-277 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 3.3E-31 7.2E-36 257.9 30.4 277 98-382 3-299 (342)
6 PF01758 SBF: Sodium Bile acid 100.0 6E-30 1.3E-34 234.2 18.2 181 138-322 1-186 (187)
7 KOG2718 Na+-bile acid cotransp 99.9 1.1E-27 2.4E-32 238.1 12.5 263 110-382 87-351 (371)
8 TIGR00946 2a69 he Auxin Efflux 99.0 6.7E-09 1.5E-13 102.6 14.9 125 120-252 196-320 (321)
9 KOG4821 Predicted Na+-dependen 99.0 9.6E-10 2.1E-14 101.7 7.3 188 104-292 17-223 (287)
10 PRK09903 putative transporter 98.9 2.5E-08 5.5E-13 98.4 14.1 124 120-252 187-310 (314)
11 COG0679 Predicted permeases [G 98.8 1.8E-07 4E-12 92.4 15.3 127 120-253 182-308 (311)
12 PF03547 Mem_trans: Membrane t 98.5 3.4E-06 7.4E-11 84.8 14.8 137 107-249 242-385 (385)
13 PRK12460 2-keto-3-deoxyglucona 98.0 0.00021 4.5E-09 70.5 15.8 228 99-350 2-243 (312)
14 PF03812 KdgT: 2-keto-3-deoxyg 97.9 0.00082 1.8E-08 66.2 18.1 181 98-296 1-198 (314)
15 KOG2718 Na+-bile acid cotransp 97.9 3.8E-06 8.2E-11 84.6 0.5 222 142-379 51-280 (371)
16 PF05145 AmoA: Putative ammoni 97.2 0.14 3E-06 51.1 23.5 160 116-285 7-174 (318)
17 TIGR00793 kdgT 2-keto-3-deoxyg 96.9 0.014 3E-07 57.5 12.6 230 99-350 2-248 (314)
18 TIGR00932 2a37 transporter, mo 96.9 0.45 9.8E-06 45.7 24.1 147 135-292 45-197 (273)
19 COG3180 AbrB Putative ammonia 96.8 0.66 1.4E-05 46.9 23.7 104 142-254 65-169 (352)
20 PRK05326 potassium/proton anti 96.4 0.71 1.5E-05 49.4 22.2 53 111-163 33-89 (562)
21 TIGR03082 Gneg_AbrB_dup membra 96.2 0.38 8.3E-06 42.9 16.0 107 136-251 48-155 (156)
22 PRK03562 glutathione-regulated 96.2 1.1 2.4E-05 48.7 22.4 77 136-220 59-137 (621)
23 COG0475 KefB Kef-type K+ trans 96.1 1.1 2.3E-05 46.2 20.9 139 136-279 61-203 (397)
24 PRK05274 2-keto-3-deoxyglucona 96.0 0.23 5E-06 49.8 14.8 230 98-350 3-250 (326)
25 PRK10669 putative cation:proto 95.5 4.4 9.4E-05 43.3 23.9 50 135-187 59-108 (558)
26 PF03977 OAD_beta: Na+-transpo 95.1 4 8.7E-05 41.1 19.6 168 143-323 74-266 (360)
27 TIGR00844 c_cpa1 na(+)/h(+) an 95.0 3.6 7.9E-05 45.9 21.0 28 138-165 76-103 (810)
28 PF03601 Cons_hypoth698: Conse 94.8 4.7 0.0001 40.1 20.8 134 110-252 28-169 (305)
29 TIGR03136 malonate_biotin Na+- 94.7 3.6 7.9E-05 41.8 18.3 101 143-254 110-212 (399)
30 PLN03159 cation/H(+) antiporte 94.6 4.4 9.5E-05 45.7 20.9 111 135-251 106-224 (832)
31 PRK03659 glutathione-regulated 94.4 4.4 9.5E-05 43.9 19.9 27 136-162 59-85 (601)
32 PF05145 AmoA: Putative ammoni 94.2 2.4 5.2E-05 42.3 16.2 107 138-253 207-314 (318)
33 TIGR00831 a_cpa1 Na+/H+ antipo 94.0 9.9 0.00021 40.5 21.6 51 111-163 25-78 (525)
34 TIGR00659 conserved hypothetic 92.1 3.9 8.4E-05 39.0 13.2 92 154-252 77-168 (226)
35 PF04172 LrgB: LrgB-like famil 91.7 1.7 3.7E-05 41.1 10.3 91 155-252 68-158 (215)
36 PRK04288 antiholin-like protei 91.5 5.8 0.00013 38.0 13.7 90 156-252 85-174 (232)
37 PRK10711 hypothetical protein; 91.2 2.5 5.3E-05 40.5 10.8 91 155-252 79-169 (231)
38 PRK12460 2-keto-3-deoxyglucona 91.2 2.5 5.5E-05 42.1 11.2 127 115-252 173-303 (312)
39 TIGR01109 Na_pump_decarbB sodi 90.7 11 0.00025 37.8 15.2 168 143-323 68-266 (354)
40 PRK15477 oxaloacetate decarbox 90.3 20 0.00043 36.8 16.6 104 144-254 140-246 (433)
41 PRK15476 oxaloacetate decarbox 90.2 20 0.00043 36.7 16.6 104 144-254 140-246 (433)
42 PRK15475 oxaloacetate decarbox 90.1 21 0.00046 36.6 16.6 104 144-254 140-246 (433)
43 TIGR00210 gltS sodium--glutama 90.0 26 0.00055 36.3 23.1 179 100-287 22-239 (398)
44 PF03616 Glt_symporter: Sodium 88.6 31 0.00067 35.2 24.9 179 100-288 22-242 (368)
45 COG2855 Predicted membrane pro 87.3 35 0.00076 34.4 21.8 132 111-252 40-178 (334)
46 COG3180 AbrB Putative ammonia 87.0 32 0.00069 35.0 15.7 105 139-252 241-346 (352)
47 PRK03562 glutathione-regulated 85.6 22 0.00049 38.7 15.0 123 118-252 246-379 (621)
48 PF03601 Cons_hypoth698: Conse 85.6 2 4.3E-05 42.7 6.4 103 271-380 28-134 (305)
49 PF00999 Na_H_Exchanger: Sodiu 85.4 0.079 1.7E-06 53.1 -3.7 147 135-286 50-200 (380)
50 PF03956 DUF340: Membrane prot 85.2 32 0.00069 31.9 17.9 125 114-252 4-138 (191)
51 TIGR00698 conserved hypothetic 85.1 46 0.00099 33.6 19.5 133 111-252 34-175 (335)
52 COG1346 LrgB Putative effector 84.4 15 0.00033 35.0 11.3 88 155-252 81-171 (230)
53 COG0786 GltS Na+/glutamate sym 83.2 60 0.0013 33.5 19.4 181 98-288 22-243 (404)
54 PRK03659 glutathione-regulated 82.7 44 0.00096 36.2 15.7 126 117-252 242-376 (601)
55 TIGR00840 b_cpa1 sodium/hydrog 81.4 83 0.0018 34.0 20.8 74 112-185 39-118 (559)
56 TIGR00793 kdgT 2-keto-3-deoxyg 80.1 22 0.00049 35.4 11.1 63 106-173 171-233 (314)
57 PF03812 KdgT: 2-keto-3-deoxyg 79.3 14 0.0003 37.0 9.4 55 116-173 179-233 (314)
58 TIGR00946 2a69 he Auxin Efflux 79.0 11 0.00023 37.2 8.7 105 263-374 5-113 (321)
59 TIGR01943 rnfA electron transp 76.5 52 0.0011 30.6 11.8 77 229-307 40-116 (190)
60 COG1883 OadB Na+-transporting 75.9 23 0.00049 35.3 9.6 101 143-254 89-190 (375)
61 PRK10669 putative cation:proto 72.5 1.4E+02 0.003 31.9 15.7 105 140-252 281-387 (558)
62 TIGR03802 Asp_Ala_antiprt aspa 70.9 1.1E+02 0.0024 33.0 14.5 102 141-249 454-559 (562)
63 PF03547 Mem_trans: Membrane t 70.5 37 0.0008 33.9 10.3 96 270-374 7-107 (385)
64 PRK05274 2-keto-3-deoxyglucona 69.1 19 0.0004 36.3 7.6 48 137-187 201-248 (326)
65 PRK02830 Na(+)-translocating N 67.2 1.1E+02 0.0024 28.7 13.0 80 228-307 40-127 (202)
66 PF06826 Asp-Al_Ex: Predicted 66.6 17 0.00037 33.1 6.2 57 297-354 55-112 (169)
67 PLN03159 cation/H(+) antiporte 65.0 1.2E+02 0.0025 34.5 13.7 130 115-252 296-436 (832)
68 TIGR00698 conserved hypothetic 64.1 18 0.00039 36.5 6.4 100 274-380 36-140 (335)
69 KOG2722 Predicted membrane pro 63.7 14 0.0003 37.9 5.4 148 102-251 240-402 (408)
70 COG3329 Predicted permease [Ge 63.1 12 0.00025 37.5 4.7 66 96-163 203-274 (372)
71 TIGR03802 Asp_Ala_antiprt aspa 62.2 1.4E+02 0.003 32.3 13.2 71 138-213 61-132 (562)
72 COG4651 RosB Kef-type K+ trans 61.1 1.9E+02 0.0042 29.3 13.7 129 115-253 37-176 (408)
73 PF04346 EutH: Ethanolamine ut 60.3 2E+02 0.0044 29.3 16.1 188 156-350 33-260 (354)
74 PRK12456 Na(+)-translocating N 60.2 1.5E+02 0.0033 27.8 13.0 80 228-307 41-124 (199)
75 PRK05151 electron transport co 55.2 1.8E+02 0.0039 27.1 13.1 77 229-307 41-117 (193)
76 PRK01061 Na(+)-translocating N 54.8 2.1E+02 0.0045 27.7 13.2 79 229-307 48-136 (244)
77 PRK15086 ethanolamine utilizat 52.6 2.8E+02 0.006 28.5 16.1 192 156-349 34-261 (372)
78 TIGR01940 nqrE NADH:ubiquinone 50.0 2.2E+02 0.0049 26.7 13.0 79 229-307 40-126 (200)
79 PRK04972 putative transporter; 48.6 3.8E+02 0.0083 28.9 15.3 72 138-215 63-136 (558)
80 PF11120 DUF2636: Protein of u 48.1 44 0.00096 25.5 4.7 36 260-295 2-37 (62)
81 PRK03818 putative transporter; 47.0 4E+02 0.0087 28.7 14.9 105 141-252 439-549 (552)
82 PF02508 Rnf-Nqr: Rnf-Nqr subu 45.4 2.5E+02 0.0055 25.9 12.7 75 229-307 41-115 (190)
83 COG0679 Predicted permeases [G 42.4 3.4E+02 0.0075 26.7 21.8 171 136-315 40-216 (311)
84 COG2855 Predicted membrane pro 41.9 64 0.0014 32.6 6.1 77 275-354 43-120 (334)
85 PRK09903 putative transporter 39.9 3.7E+02 0.008 26.3 22.8 199 106-315 5-221 (314)
86 PRK03818 putative transporter; 37.4 5.6E+02 0.012 27.6 15.1 66 139-211 65-133 (552)
87 PRK15060 L-dehydroascorbate tr 36.3 5.2E+02 0.011 27.0 17.2 52 110-165 221-272 (425)
88 COG0395 UgpE ABC-type sugar tr 35.3 4.4E+02 0.0095 25.8 12.7 112 169-286 144-271 (281)
89 COG0025 NhaP NhaP-type Na+/H+ 34.6 5.5E+02 0.012 26.7 21.0 144 136-288 62-214 (429)
90 TIGR01625 YidE_YbjL_dupl AspT/ 33.6 3.5E+02 0.0076 24.1 11.1 62 139-204 58-121 (154)
91 PF05982 DUF897: Domain of unk 31.0 5.7E+02 0.012 25.9 20.4 203 136-354 25-263 (327)
92 COG1970 MscL Large-conductance 30.4 1.7E+02 0.0037 25.6 6.1 70 115-188 19-93 (130)
93 COG0475 KefB Kef-type K+ trans 29.6 6.3E+02 0.014 25.9 13.8 102 115-224 246-354 (397)
94 COG3763 Uncharacterized protei 28.9 99 0.0021 24.2 4.0 23 330-352 8-30 (71)
95 PF06826 Asp-Al_Ex: Predicted 27.9 4.6E+02 0.0099 23.7 14.5 104 115-226 30-142 (169)
96 PRK01844 hypothetical protein; 27.4 1.1E+02 0.0024 24.1 4.0 23 330-352 8-30 (72)
97 TIGR00844 c_cpa1 na(+)/h(+) an 27.3 4.6E+02 0.0099 29.9 10.3 79 140-222 300-381 (810)
98 PRK14853 nhaA pH-dependent sod 26.3 7E+02 0.015 26.2 10.9 53 135-187 64-119 (423)
99 TIGR01625 YidE_YbjL_dupl AspT/ 26.3 1.8E+02 0.004 25.9 5.9 20 335-354 94-113 (154)
100 COG1593 DctQ TRAP-type C4-dica 25.3 7.7E+02 0.017 25.5 16.1 105 98-211 158-267 (379)
101 TIGR01190 ccmB heme exporter p 24.4 6E+02 0.013 23.9 9.8 18 266-283 194-211 (211)
102 PF05684 DUF819: Protein of un 24.4 7.8E+02 0.017 25.2 14.5 125 111-244 241-367 (378)
103 PRK00523 hypothetical protein; 24.0 1.5E+02 0.0032 23.4 4.2 23 330-352 9-31 (72)
104 PRK01663 C4-dicarboxylate tran 23.8 8.4E+02 0.018 25.4 17.0 22 111-132 13-34 (428)
105 PRK05326 potassium/proton anti 23.6 5.2E+02 0.011 27.6 9.8 105 140-252 279-390 (562)
106 COG0385 Predicted Na+-dependen 23.5 7.7E+02 0.017 24.8 15.5 156 177-349 94-250 (319)
107 TIGR00832 acr3 arsenical-resis 22.8 7.3E+02 0.016 24.7 10.1 41 171-215 252-292 (328)
108 COG5505 Predicted integral mem 21.6 8.6E+02 0.019 24.7 10.4 110 135-251 60-171 (384)
109 TIGR00783 ccs citrate carrier 21.5 5E+02 0.011 26.5 8.6 61 139-202 241-302 (347)
110 COG2985 Predicted permease [Ge 21.0 4.1E+02 0.009 28.5 8.0 95 116-215 38-135 (544)
111 TIGR01939 nqrD NADH:ubiquinone 20.1 7.4E+02 0.016 23.4 12.4 32 276-307 83-114 (207)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=4.7e-45 Score=355.28 Aligned_cols=273 Identities=32% Similarity=0.521 Sum_probs=252.8
Q ss_pred hHHHHHH-HhhhHHHHHHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHH
Q 016764 99 SLVNILK-QSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177 (383)
Q Consensus 99 ~~~~~l~-~l~~~l~~~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl 177 (383)
+..+.++ +..+.+++|++....++...|+.+.|++ .+++++++++||.+|++++.+|+++.++|||.+++++++||++
T Consensus 2 ~~~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvl 80 (319)
T COG0385 2 KLLRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLG-SAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVL 80 (319)
T ss_pred cHHHHHhHhHHHHHHHHHHHHHHHHHhccccchhhh-HHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3445553 4445789999999999999999999997 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Q 016764 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL 257 (383)
Q Consensus 178 ~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v 257 (383)
||+++|++++ .++++|+++.|+++++|||||+.||+||+++|||+ +++++++.+||+++++++|+++.++.|+++
T Consensus 81 mPlla~~~~~----~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v 155 (319)
T COG0385 81 MPLLALLLAK----LFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGV 155 (319)
T ss_pred HHHHHHHHHH----HcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999998 67899999999999999999999999999999999 899999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Q 016764 258 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL 337 (383)
Q Consensus 258 ~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~ 337 (383)
++|.++++.++++++++|..+|+++|++.|++.++.+|.+++++..++++++...++.+.+.+.+. +..+.+.+++++.
T Consensus 156 ~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~-~~~v~~~v~~~n~ 234 (319)
T COG0385 156 PVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS-GLLIFVAVILHNL 234 (319)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888877764 4467788899999
Q ss_pred HHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764 338 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS 382 (383)
Q Consensus 338 ~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s 382 (383)
++|.+||+.+|.+ +.+. ++++|+++|.||||.++++++|..
T Consensus 235 lg~~~gy~~ar~~-g~~~---a~~iti~ie~g~qn~~lg~alA~~ 275 (319)
T COG0385 235 LGLLLGYFGARLL-GFDK---ADEITIAIEGGMQNLGLGAALAAA 275 (319)
T ss_pred HHHHHHHHHHHHh-CCCh---hheeeEEEeeccccHHHHHHHHHh
Confidence 9999999999875 5443 899999999999999999998863
No 2
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=4.8e-42 Score=339.80 Aligned_cols=269 Identities=15% Similarity=0.227 Sum_probs=231.9
Q ss_pred HhhhHHHHHH----HHHHHHHhccCcchhhhhhh----h---HHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHH
Q 016764 106 QSNSFLPHVV----LGSTMLALVFPPSFTWFTAR----Y---YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQ 174 (383)
Q Consensus 106 ~l~~~l~~~v----l~~~~lGl~~P~~~~~~~~~----~---i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~ 174 (383)
+++|+++.++ ++++++|+.+|..+.+.... . ..+.+++|||++|++++++|+++.+||||.++.+++.|
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~q 82 (328)
T TIGR00832 3 LLERYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFIN 82 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHH
Confidence 4555555555 44669999999998887521 1 22356789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016764 175 FVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG 254 (383)
Q Consensus 175 fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g 254 (383)
|+++|+++|+++++ +++++|+++.|+++++|||||++|++||+++|||. ++++++|.++++++++++|++++++.|
T Consensus 83 fvi~Plla~~l~~l---~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnv-alsv~lt~~stLl~~~~~P~l~~ll~~ 158 (328)
T TIGR00832 83 WIIGPFLMFLLAWL---FLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDP-EYTLVLVAVNSLFQVFLYAPLAWLLLG 158 (328)
T ss_pred HHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999984 34889999999999999999999999999999999 899999999999999999999998876
Q ss_pred --------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhh-hhhcccChHHHHHHHHHHHHHhhhhhhhh
Q 016764 255 --------KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR-----ICN-AIRPFLPPLSVLVTACCVGAPLAINIESV 320 (383)
Q Consensus 255 --------~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~-----~~~-~i~~~l~~ls~l~llliv~~v~a~~~~~i 320 (383)
+++++|+++++++++.++++|+++|+++|++.++ +.+ +.++..+.++.+++..++...++.|++.+
T Consensus 159 ~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i 238 (328)
T TIGR00832 159 VSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETI 238 (328)
T ss_pred cCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999985 333 67778888899888888888888888877
Q ss_pred hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764 321 MSPFG--LTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS 382 (383)
Q Consensus 321 ~~~~~--~~i~l~~~ll~~~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s 382 (383)
.++.. ..+.++.++++..+|.+||+++|.+ +.++ +++||+++|+|+||.++|+++|.+
T Consensus 239 ~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~-~l~~---~~~~a~~~e~g~qN~~lai~lA~~ 298 (328)
T TIGR00832 239 IELPLDIALIAIPLLIYFYIMFFLTFALAKKL-GLPY---SITAPAAFTGASNNFELAIAVAIS 298 (328)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcCh---hhhhhheehhhhhhHHHHHHHHHH
Confidence 76532 2344567899999999999999875 5553 899999999999999999999864
No 3
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=6.7e-37 Score=297.81 Aligned_cols=236 Identities=28% Similarity=0.444 Sum_probs=215.1
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhH
Q 016764 135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 214 (383)
Q Consensus 135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~ 214 (383)
.++.+.++++||.+|++++++|+++.++||+.+..+++.|++++|+++|++++ .++++++++.|+++++++||+.+
T Consensus 8 ~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~----~~~l~~~~~~glvL~~~~P~~~~ 83 (286)
T TIGR00841 8 TILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAK----VFKLPPELAVGVLIVGCCPGGTA 83 (286)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHheeeCCCchH
Confidence 45666799999999999999999999999999999999999999999999998 67899999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCcc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016764 215 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL----PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRIC 290 (383)
Q Consensus 215 s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v----~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~ 290 (383)
+++||+++|||. +++..++.++|+++++++|+++.++.+... ++|+++++.+ +.++++|+++|+++|++.|++.
T Consensus 84 s~v~t~~~~gn~-~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~ 161 (286)
T TIGR00841 84 SNVFTYLLKGDM-ALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIA 161 (286)
T ss_pred HHHHHHHhCCCH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999 899999999999999999999999876544 4999999999 9999999999999999999998
Q ss_pred hhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccceeeEeeecc
Q 016764 291 NAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGV 370 (383)
Q Consensus 291 ~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~ 370 (383)
++.++ .+.++.+.+.+++...++.+.+.+.+. .+.+++.++++++++|.+||+.+|.+ +.++ +++||+++|+|+
T Consensus 162 ~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~~~-~l~~---~~~~t~~~~~g~ 235 (286)
T TIGR00841 162 KIILK-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAKLA-GLPW---ARCRTISIEVGM 235 (286)
T ss_pred HHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCH---hhheeeeeeeec
Confidence 88888 899999988888877788888877664 45677889999999999999999875 5443 789999999999
Q ss_pred CChHHhhhhhcc
Q 016764 371 MFLYNKILYSSS 382 (383)
Q Consensus 371 rN~~lAl~IA~s 382 (383)
||.++|+++|.+
T Consensus 236 qN~~lal~la~~ 247 (286)
T TIGR00841 236 QNSQLCSTIAQL 247 (286)
T ss_pred ccHHHHHHHHHH
Confidence 999999999874
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=2.1e-33 Score=276.59 Aligned_cols=266 Identities=20% Similarity=0.273 Sum_probs=231.7
Q ss_pred hHHHHHHHHHHHHHhccCcchhhhh----hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 016764 109 SFLPHVVLGSTMLALVFPPSFTWFT----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 184 (383)
Q Consensus 109 ~~l~~~vl~~~~lGl~~P~~~~~~~----~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~ 184 (383)
+++++.++.++++|+.+|+.+.... +...++.+++++|.+|++++.+|+++.++|||.++.++..+|+++|+++++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999987432 245678999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCChhHHHHHHHHhcCCchhHHH-HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-CCccccChH
Q 016764 185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI-GKRLPVDVK 262 (383)
Q Consensus 185 l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~-v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~-g~~v~id~~ 262 (383)
+..++. ..++++++.|+++++|+|++..|+ +||+.+|||. ++++.++.++|+++++++|+++.++. +++.++|+.
T Consensus 81 ~~~l~~--~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~ 157 (313)
T PF13593_consen 81 LSRLFP--AFLPPELALGLLILACLPTTVSSSVVLTRLAGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYA 157 (313)
T ss_pred HHHHhh--ccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHH
Confidence 998532 246899999999999999998886 5999999999 89999999999999999999999998 788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhh--hhhhh---hhhhhHHHHHHHHHHH
Q 016764 263 GMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAIN--IESVM---SPFGLTILLLIITFHL 337 (383)
Q Consensus 263 ~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~--~~~i~---~~~~~~i~l~~~ll~~ 337 (383)
+++.++...+++|+++|+++|++++++.+|.++.++.++...+++++...++.. .+... ......+....+.++.
T Consensus 158 ~~~~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (313)
T PF13593_consen 158 SVLIKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL 237 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887776554 22221 1111234566788999
Q ss_pred HHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhc
Q 016764 338 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSS 381 (383)
Q Consensus 338 ~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~ 381 (383)
..+.++|..+|.+ +.++ +|++++.|..++||..+++.+++
T Consensus 238 ~~l~~~~~~~r~~-~~~~---~d~iA~~F~gs~Ksl~~gvpl~~ 277 (313)
T PF13593_consen 238 VVLVLGWLAARLL-GFSR---PDRIAVLFCGSQKSLALGVPLAS 277 (313)
T ss_pred HHHHHHHHHHhhc-CCCh---hhEEEEEEEcCcCcchhHHHHHH
Confidence 9999999999875 5554 79999999999999999998875
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-31 Score=257.88 Aligned_cols=277 Identities=14% Similarity=0.200 Sum_probs=241.8
Q ss_pred chHHHHHHHhhhHHHHHHHHH----HHHHhccCcchhhhh-------hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhH
Q 016764 98 FSLVNILKQSNSFLPHVVLGS----TMLALVFPPSFTWFT-------ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAA 166 (383)
Q Consensus 98 ~~~~~~l~~l~~~l~~~vl~~----~~lGl~~P~~~~~~~-------~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ 166 (383)
++..+.++++||+++.|+..+ +.+|..+|+..+... +.-+.+.+.+||+.+.+++|+++++++.+++|.
T Consensus 3 ~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~ 82 (342)
T COG0798 3 MKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKP 82 (342)
T ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchH
Confidence 344567889999888887554 467788898655444 234567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Q 016764 167 IFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTP 246 (383)
Q Consensus 167 ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~P 246 (383)
+...+..|+++.|+++|++++++ ++..|++.+|+++++.+||..++.+|+++++||. +++++.+.++.++++++.|
T Consensus 83 L~lsL~~Nwii~P~lm~~la~~f---l~~~pey~~GlILlglApC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~ 158 (342)
T COG0798 83 LILSLFVNWIIGPLLMFALAWFF---LPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYA 158 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999964 4778899999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHhhCCc-cccChHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhcccChHHHHHHHHHHHHHhhhhhhh
Q 016764 247 LLSLLLIGKR-LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR------ICNAIRPFLPPLSVLVTACCVGAPLAINIES 319 (383)
Q Consensus 247 l~l~ll~g~~-v~id~~~i~~~Lll~VllPl~lG~llr~~~p~------~~~~i~~~l~~ls~l~llliv~~v~a~~~~~ 319 (383)
.+.+++.|.. ++++++++++++++.+.+|+++|++.|++..+ +.+|+.|..++++..+++..+..+++.+.+.
T Consensus 159 ~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~ 238 (342)
T COG0798 159 PLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQ 238 (342)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHH
Confidence 9999988754 78999999999999999999999999987533 2467888899999999999999999999999
Q ss_pred hhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764 320 VMSPFG--LTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS 382 (383)
Q Consensus 320 i~~~~~--~~i~l~~~ll~~~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s 382 (383)
+.+.+. ..++++..+.....+.++|+++|.+ +.+. +++.+++|.++.+|.++|+++|.+
T Consensus 239 Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k~l-gl~y---~~~~~~~ft~aSNnfeLAiAvAi~ 299 (342)
T COG0798 239 IVEQPLDILLIAIPLLIYFLLMFFISYFIAKAL-GLPY---EDAAALVFTGASNNFELAIAVAIA 299 (342)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCh---hhhhceeeeeccccHHHHHHHHHH
Confidence 887643 2466788888899999999999875 5554 799999999999999999999865
No 6
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.97 E-value=6e-30 Score=234.22 Aligned_cols=181 Identities=30% Similarity=0.560 Sum_probs=155.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHH
Q 016764 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY 217 (383)
Q Consensus 138 ~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v 217 (383)
+..++++||.+|++++++|+++.+||||.++.+++.||+++|+++|++++. .++++++++.|+++++|+||+..+++
T Consensus 1 ~i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~---~~~~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 1 PILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWL---LLPLSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp --HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-H---HTT--HHHHHHHHHHHHS-B-THHHH
T ss_pred ChhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHhcCCcHHHHHH
Confidence 357899999999999999999999999999999999999999999999942 67899999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC---hHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhh
Q 016764 218 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD---VKGMVSSILQIVVVPIAAGLLLNRFFP--RICNA 292 (383)
Q Consensus 218 ~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id---~~~i~~~Lll~VllPl~lG~llr~~~p--~~~~~ 292 (383)
||+++|||. ++++.++.++++++++++|+++.++.+...+.| .++++.+++..+++|+++|+++|++.| +..++
T Consensus 78 ~t~l~~Gd~-~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~ 156 (187)
T PF01758_consen 78 FTYLAGGDV-ALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARR 156 (187)
T ss_dssp HHHHTT--H-HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HH
T ss_pred HHHHhCCCc-ccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHH
Confidence 999999999 899999999999999999999999988877766 999999999999999999999999999 88889
Q ss_pred hhcccChHHHHHHHHHHHHHhhhhhhhhhh
Q 016764 293 IRPFLPPLSVLVTACCVGAPLAINIESVMS 322 (383)
Q Consensus 293 i~~~l~~ls~l~llliv~~v~a~~~~~i~~ 322 (383)
+++..+.++.+++++++...++.|.+.+.+
T Consensus 157 ~~~~~~~~s~~~l~~~i~~~~~~~~~~i~~ 186 (187)
T PF01758_consen 157 LKPFLKPLSFILLLLIIVLIFASNASVIAS 186 (187)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTH-----
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcccccC
Confidence 999999999999999988888888876644
No 7
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=238.13 Aligned_cols=263 Identities=38% Similarity=0.612 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHhccC-cchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 110 FLPHVVLGSTMLALVFP-PSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI 188 (383)
Q Consensus 110 ~l~~~vl~~~~lGl~~P-~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l 188 (383)
.+++......++....| ..+.|+.+...++.+.+.|+++|++.|.+++++.++||+.+.+|++.||++||+.+|.++.
T Consensus 87 ~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~- 165 (371)
T KOG2718|consen 87 ILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSK- 165 (371)
T ss_pred chhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhh-
Confidence 67777777778888888 8888888778889999999999999999999999999999999999999999999999987
Q ss_pred hhhccCCChhHHHHHHHHhcCCchhHHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHH
Q 016764 189 SVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSS 267 (383)
Q Consensus 189 ~~~~~~l~~~~a~GlvL~a~~P~~~~s~v-~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~ 267 (383)
.+.+|..+++|++++.|++++..++. ++...+||. .+++.+|.++|+.+++++|++...+.++.++.|...+..+
T Consensus 166 ---~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v-~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s 241 (371)
T KOG2718|consen 166 ---VLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDV-TLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIAS 241 (371)
T ss_pred ---HhhCCccccceeEEEEeccCCcchhhheeecCCcch-hhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhh
Confidence 56778888788888888776666655 555559999 8999999999999999999999999888888898888889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016764 268 ILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT 347 (383)
Q Consensus 268 Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~lla 347 (383)
++..+.+|+++|.++|+++|+..+.+.+.++++++....++++.....|...+.. .++.+...+..+++.||..||+.+
T Consensus 242 ~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~ 320 (371)
T KOG2718|consen 242 ILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLS 320 (371)
T ss_pred hhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988877778777777 688899999999999999999997
Q ss_pred HHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764 348 GLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS 382 (383)
Q Consensus 348 r~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s 382 (383)
+....+ ++++||++.|+||||..+|++.++.
T Consensus 321 ~~~~~~----~a~~~tisie~g~q~s~~a~~l~t~ 351 (371)
T KOG2718|consen 321 FSPLDD----VATARTISIETGMQNSLLALALATK 351 (371)
T ss_pred ccccch----hhhhcchHHHhccchhHHHHHHhhc
Confidence 432121 3689999999999999999988764
No 8
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.01 E-value=6.7e-09 Score=102.56 Aligned_cols=125 Identities=15% Similarity=0.206 Sum_probs=108.2
Q ss_pred HHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhH
Q 016764 120 MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPI 199 (383)
Q Consensus 120 ~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~ 199 (383)
..|+..|+......+........+.|+..|+.++.++.+ ++++........++++.|++++++.. .++++++.
T Consensus 196 ~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~P~i~~~~~~----~~~l~~~~ 268 (321)
T TIGR00946 196 LVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQPAVMAGISK----LIGLRGLE 268 (321)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHHHHHHHHHHH----HhCCChHH
Confidence 456667877665555566778999999999999887664 35567788888999999999999987 67889999
Q ss_pred HHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 200 GAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 200 a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
....++++++|++..+.+++...|+|. +.+...+.++|+++.+++|+|++++
T Consensus 269 ~~~~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 269 LSVAILQAALPGGAVAAVLATEYEVDV-ELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHcCChhhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 8999999999999999999999875
No 9
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=98.98 E-value=9.6e-10 Score=101.69 Aligned_cols=188 Identities=14% Similarity=0.188 Sum_probs=142.6
Q ss_pred HHHhh-hHHHHHHHHHHHHHhccCcchhhhh---hhh-H-HHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHH
Q 016764 104 LKQSN-SFLPHVVLGSTMLALVFPPSFTWFT---ARY-Y-APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177 (383)
Q Consensus 104 l~~l~-~~l~~~vl~~~~lGl~~P~~~~~~~---~~~-i-~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl 177 (383)
..+.+ +|+...+.++...+-+-|+.+.... +.+ + ....+-+++..|++++.|++..+.++|+.++++++..+.+
T Consensus 17 ~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~ 96 (287)
T KOG4821|consen 17 TEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSLLI 96 (287)
T ss_pred HHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33443 4777778888888888888764332 222 1 2366778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCC-
Q 016764 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK- 255 (383)
Q Consensus 178 ~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v-~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~- 255 (383)
.|-..|++..+. ..-+.+.++..|+.+.+|+|++.+|++ .|..+|||..++.+.....+.+.++...|-....+...
T Consensus 97 tPs~~~Lf~~~~-~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~LL~~~ 175 (287)
T KOG4821|consen 97 TPSIVYLFCCAV-KAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQMLLNRA 175 (287)
T ss_pred hHHHHHHHHHHH-hCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHccC
Confidence 999999887632 123466789999999999999999986 89999999744444455567777777777776665421
Q ss_pred -----------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016764 256 -----------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNA 292 (383)
Q Consensus 256 -----------~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~ 292 (383)
.+...+..++.+....+++|...|+..+...|+-+..
T Consensus 176 ~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 223 (287)
T KOG4821|consen 176 PFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTAY 223 (287)
T ss_pred CccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCceeE
Confidence 1223456677788889999999999999988875433
No 10
>PRK09903 putative transporter YfdV; Provisional
Probab=98.89 E-value=2.5e-08 Score=98.37 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=103.8
Q ss_pred HHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhH
Q 016764 120 MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPI 199 (383)
Q Consensus 120 ~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~ 199 (383)
..|+..|+..+...+........+.|+..|+.+...+++. + +......+.++++.|++++++.. .+++++..
T Consensus 187 l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~---~-~~~~~~~~~Kli~~P~i~~~~~~----~~~l~~~~ 258 (314)
T PRK09903 187 LVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEF---S-AEIAYNTFLKLILMPLALLLVGM----ACHLNSEH 258 (314)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---c-HHHHHHHHHHHHHHHHHHHHHHH----HcCCCcHH
Confidence 4566678777665545567788999999999987765532 2 33456677899999999988776 56889999
Q ss_pred HHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 200 GAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 200 a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
....++++++|++..+.+++...|+|. +++.....+||+++.+++|+|++++
T Consensus 259 ~~v~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 259 LQMMVLAGALPPAFSGIIIASRFNVYT-RTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8999999999999999999999875
No 11
>COG0679 Predicted permeases [General function prediction only]
Probab=98.77 E-value=1.8e-07 Score=92.39 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=108.2
Q ss_pred HHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhH
Q 016764 120 MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPI 199 (383)
Q Consensus 120 ~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~ 199 (383)
..|+..|+..+...+........+.|+..|++++.++.++ .+++........+++++|+.+++.++ .++++++.
T Consensus 182 ~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~~kll~~Pl~~~~~~~----~~~l~~~~ 255 (311)
T COG0679 182 LLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALSLKLLLAPLVALLVAK----LLGLSGLA 255 (311)
T ss_pred HcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHHHHHHHHHHHHHHHHH----HcCCChHH
Confidence 4567888876655556677899999999999999944433 24556666677799999999999988 67999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016764 200 GAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 253 (383)
Q Consensus 200 a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~ 253 (383)
...+++++++|++..+.+++...++|. +++...+.++|+++.+++|.+...+.
T Consensus 256 ~~v~vl~~a~P~A~~~~v~a~~~~~~~-~laa~~i~ist~ls~~t~p~~~~~l~ 308 (311)
T COG0679 256 LQVLVLLSAMPTAVNAYVLARQYGGDP-RLAASTILLSTLLSLLTLPLLILLLL 308 (311)
T ss_pred HHHHHHHhhCcHHhHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 89999999999999999999988774
No 12
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.46 E-value=3.4e-06 Score=84.79 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHHHHhcc---C----cchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHH
Q 016764 107 SNSFLPHVVLGSTMLALVF---P----PSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 179 (383)
Q Consensus 107 l~~~l~~~vl~~~~lGl~~---P----~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~P 179 (383)
+.+-..+..+++.++++.- | +......+......+.+.||.+|..+.....+... +.+......+..++++|
T Consensus 242 ~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~rlii~P 320 (385)
T PF03547_consen 242 FKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVRLIILP 320 (385)
T ss_pred HhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHH
Confidence 3333333445555555543 3 22222222344567888899999888765544322 33444556888999999
Q ss_pred HHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 016764 180 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLS 249 (383)
Q Consensus 180 lla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l 249 (383)
++++++.. .++++++....+++.+++|++..+.+++..++.|. ..+.....++++++++++|+|+
T Consensus 321 ~i~~~~~~----~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 321 LIGIGIVF----LLGLDGDMARVLILQAAMPTAINSFVIASLYGLDE-EEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHH----HHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHC
Confidence 99999987 56789999999999999999999999999999998 7888889999999999999984
No 13
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.01 E-value=0.00021 Score=70.54 Aligned_cols=228 Identities=18% Similarity=0.230 Sum_probs=131.4
Q ss_pred hHHHHHHHhhh-HHHHHHHHHHHHHhccCcchhhhh--h----hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHH
Q 016764 99 SLVNILKQSNS-FLPHVVLGSTMLALVFPPSFTWFT--A----RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY 171 (383)
Q Consensus 99 ~~~~~l~~l~~-~l~~~vl~~~~lGl~~P~~~~~~~--~----~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l 171 (383)
++++.++++-. .+.+=++.+.++.-++|+..+.-. + .-..+.+++.+|.+|.+++.++..+.++|...+ +
T Consensus 2 ~i~~~~~kiPgg~m~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l---~ 78 (312)
T PRK12460 2 HIKKAIKKIPGGMMVVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVL---T 78 (312)
T ss_pred chhhhhccCCCceeHHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhh---h
Confidence 44455445543 333336788889999999854211 1 123568899999999999999999988775532 3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHH-----HHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Q 016764 172 VGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-----YATFLTDPPLAPLSIVMTSLSTATAVFVTP 246 (383)
Q Consensus 172 ~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~-----v~T~lagGd~~~Lal~lt~istlla~~~~P 246 (383)
+.++++-=++++++++ +++.+. ..|+-.++..-+...+| ..+..+|-+.|.-+... .+.--+|+++
T Consensus 79 ~~K~~~~~~~g~~~~~----~~g~~g--~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~gA~~~--~sl~~GPf~t- 149 (312)
T PRK12460 79 ITKLGVAIVIGLLVGK----FFGAEG--IFGLSGLAIVAAMSNSNGGLYAALMGEFGDERDVGAISI--LSLNDGPFFT- 149 (312)
T ss_pred hHHHHHHHHHHHHHHH----HcCccc--ccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhhHHhh--hhhccCcHHH-
Confidence 4577776677888887 445433 22333333322222221 24555655443223322 2223344433
Q ss_pred HHHHHhhCCc--cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 016764 247 LLSLLLIGKR--LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPF 324 (383)
Q Consensus 247 l~l~ll~g~~--v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~ 324 (383)
.+-.+.. .++|+. .+ .-.++|+++|++++...+++.+.+++-.+. .. .+..+......+-+++.+ .
T Consensus 150 ---m~aLga~gLA~ip~~----~l-v~lilpILiGmilGNld~~~~~~l~~Gi~f-~I--~f~~f~LG~~lnl~~I~~-~ 217 (312)
T PRK12460 150 ---MLALGAAGLANIPIM----AL-VAALLPLVLGMILGNLDPDMRKFLTKGGPL-LI--PFFAFALGAGINLSMLLQ-A 217 (312)
T ss_pred ---HHHHHHHHHhcCChH----HH-HHHHHHHHHHHHHhccchhhHHHHhccceE-eH--HHHHHHhcCCeeHHHHHH-h
Confidence 3322221 235543 22 348899999999999887777777765544 11 111111222334445544 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 325 GLTILLLIITFHLSAFVAGYVVTGLA 350 (383)
Q Consensus 325 ~~~i~l~~~ll~~~gf~lG~llar~l 350 (383)
++..++..++...+.+..+|+++|++
T Consensus 218 G~~GIlL~v~vv~~t~~~~~~i~rll 243 (312)
T PRK12460 218 GLAGILLGVLVTIVTGFFNIFADRLV 243 (312)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666677778889999999765
No 14
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.93 E-value=0.00082 Score=66.23 Aligned_cols=181 Identities=14% Similarity=0.279 Sum_probs=113.0
Q ss_pred chHHHHHHHhhh-HHHHHHHHHHHHHhccCcchhhhh---hh---hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHH
Q 016764 98 FSLVNILKQSNS-FLPHVVLGSTMLALVFPPSFTWFT---AR---YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAG 170 (383)
Q Consensus 98 ~~~~~~l~~l~~-~l~~~vl~~~~lGl~~P~~~~~~~---~~---~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~ 170 (383)
|++++.++++-. .+.+=++.+.++--++|+..+... +. -..+.+++.+|.+|.++++|+..+.+||--.+
T Consensus 1 MkI~~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~l--- 77 (314)
T PF03812_consen 1 MKIKKTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVL--- 77 (314)
T ss_pred CChhHhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHH---
Confidence 567777777654 444446888999999999876322 11 13568899999999999999999999875433
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCh---hHHHHHH---HHhcCCchhHH--HHHHHhcCCCCchhHHHHHHHHHHHHH
Q 016764 171 YVGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIM---LVSCVSGAQLS--NYATFLTDPPLAPLSIVMTSLSTATAV 242 (383)
Q Consensus 171 l~~~fvl~Plla~~l~~l~~~~~~l~~---~~a~Glv---L~a~~P~~~~s--~v~T~lagGd~~~Lal~lt~istlla~ 242 (383)
++.++++-=++++++.+ +++.+. ....|+- +++++.....+ ...+..+|-+.| . -... +++.
T Consensus 78 l~~K~~~~~~lgl~~~~----~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D-~-gA~~----i~sl 147 (314)
T PF03812_consen 78 LLVKFIIGALLGLLVGK----FFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED-V-GAFS----ILSL 147 (314)
T ss_pred HHHHHHHHHHHHHHHHH----HcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH-h-HHHH----HHHh
Confidence 35678777777888887 444332 1223322 22222222111 124455554442 2 2222 3344
Q ss_pred HHHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 016764 243 FVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPF 296 (383)
Q Consensus 243 ~~~Pl~l~ll~g~--~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~ 296 (383)
..-|+...+..|. ..++|+..+ +-.++|+++|+++-..-|++.+-++|-
T Consensus 148 ~~GPf~tMl~LG~sG~a~ip~~~l-----v~~llP~iiG~iLGNLD~~~r~fl~~~ 198 (314)
T PF03812_consen 148 NDGPFFTMLALGASGLANIPWMSL-----VAALLPIIIGMILGNLDPDFRKFLAPG 198 (314)
T ss_pred hhhHHHHHHHHhhccccCCCHHHH-----HHHHHHHHHHHHHhcCCHHHHHHHhcC
Confidence 4556555555553 346887654 467789999999998888876666654
No 15
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=97.85 E-value=3.8e-06 Score=84.63 Aligned_cols=222 Identities=17% Similarity=0.180 Sum_probs=149.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHH
Q 016764 142 GFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFV-VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATF 220 (383)
Q Consensus 142 ~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fv-l~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~ 220 (383)
...|+..|++++.++++++.++++.+...+..++. ++|...+.... .+..++......+...|+|++..++.++.
T Consensus 51 ~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v----~~~~~~~~~~t~l~~~~~~~gl~~~~ls~ 126 (371)
T KOG2718|consen 51 NFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKV----LFLLDPLLAFTWLVTGCFPPGLLSNMLSF 126 (371)
T ss_pred hHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHH----HhhcCCcccceEEEeCccccHHHHHHHHH
Confidence 37889999999999999999999888888888998 99999999987 45667767888899999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHH-HHHHHh----hCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016764 221 LTDPPLAPLSIVMTSLSTATAVFVTP-LLSLLL----IGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRP 295 (383)
Q Consensus 221 lagGd~~~Lal~lt~istlla~~~~P-l~l~ll----~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~ 295 (383)
-.++|+ +....++.-.+.+.+..+| ++++=+ .+....+|...-..-++...+.|.-+|..++...++-...+..
T Consensus 127 g~~~~~-~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsi 205 (371)
T KOG2718|consen 127 GIKLDM-DLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSI 205 (371)
T ss_pred hcCccH-HHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHH
Confidence 999999 7888888877777777666 322212 1222233332212223456677888888888776554444444
Q ss_pred ccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHhhhccccccccceeeEeeeccCCh
Q 016764 296 FLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA--FVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFL 373 (383)
Q Consensus 296 ~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~g--f~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~ 373 (383)
....++.++.+++.-..-....+.+...... .+....+..++ +.+|+++.+. -.+++..+++++||+
T Consensus 206 lmT~~stv~avi~~pl~s~~l~~~l~~~d~~--~v~~s~~~vv~~pl~lG~lL~~~---------~~k~t~~i~~~~~~v 274 (371)
T KOG2718|consen 206 LMTTISTVLAVILTPLLSILLGRALIPVDAL--GVIASILQVVGLPLALGLLLNKW---------FPKRTVAIEPGLPPV 274 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhcccch--hhhhhhhHHhHHHHHHHHHhccc---------CccceeeeecCCCch
Confidence 4444444444333211111222222221111 12224455555 7888777632 258999999999999
Q ss_pred HHhhhh
Q 016764 374 YNKILY 379 (383)
Q Consensus 374 ~lAl~I 379 (383)
++..++
T Consensus 275 sv~~t~ 280 (371)
T KOG2718|consen 275 SVCLTI 280 (371)
T ss_pred HHHhhh
Confidence 987654
No 16
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.25 E-value=0.14 Score=51.08 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=105.2
Q ss_pred HHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 016764 116 LGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL 195 (383)
Q Consensus 116 l~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l 195 (383)
+.+.+.+...+....+-. ..-.....++=..+|..++.+.+.+....+...+...+...+..-+.+|.+.+ ..+.
T Consensus 7 ia~~~~~~~~~~~~~~p~-~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r----~~~~ 81 (318)
T PF05145_consen 7 IAVIIAALFGPLPLRVPR-RLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRR----ISGL 81 (318)
T ss_pred HHHHHHHHhCCCccCCCH-HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCC
Confidence 344444444433332221 23345555666679999999999988888877777777777777777888877 4455
Q ss_pred ChhHHHHHHHHhcCCchhHHH-HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCC----ccccChH---HHHHH
Q 016764 196 PTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK----RLPVDVK---GMVSS 267 (383)
Q Consensus 196 ~~~~a~GlvL~a~~P~~~~s~-v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~----~v~id~~---~i~~~ 267 (383)
+. ..++ .++.|||.+.. +++.-.|+|. ........+=-++-++++|+...++.+. ..+.+.. .-...
T Consensus 82 d~--~TA~--~~~~PGg~s~m~~la~~~gad~-~~Va~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (318)
T PF05145_consen 82 DR--ATAF--FASMPGGLSEMVALAEEYGADT-RRVALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMSWLW 156 (318)
T ss_pred Ch--hHHH--HHcCCccHHHHHHHHHHcCCCh-hhhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCCHHH
Confidence 43 4444 49999998775 4888999998 7888888888888888999999887653 1111110 01223
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016764 268 ILQIVVVPIAAGLLLNRF 285 (383)
Q Consensus 268 Lll~VllPl~lG~llr~~ 285 (383)
+...+.+=.+.|.+.|+.
T Consensus 157 l~~l~~~~~~g~~l~~~l 174 (318)
T PF05145_consen 157 LALLALAALAGGLLARRL 174 (318)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444555555666666665
No 17
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.94 E-value=0.014 Score=57.52 Aligned_cols=230 Identities=13% Similarity=0.191 Sum_probs=126.3
Q ss_pred hHHHHHHHhhh-HHHHHHHHHHHHHhccCcchhhhh---hh---hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHH
Q 016764 99 SLVNILKQSNS-FLPHVVLGSTMLALVFPPSFTWFT---AR---YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY 171 (383)
Q Consensus 99 ~~~~~l~~l~~-~l~~~vl~~~~lGl~~P~~~~~~~---~~---~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l 171 (383)
++++.++++-. .+.+=++.+.++.-++|+.+.... +. -..+.+++.+|++|.+++.|+-.+.++|...+ +
T Consensus 2 ~i~~~i~kIPGG~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~ 78 (314)
T TIGR00793 2 KIKRSIEKIPGGMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---V 78 (314)
T ss_pred chhhhhccCCCceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---e
Confidence 44444445543 233336788889999999865422 11 23568999999999999999999988775432 3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCh---hHHHHHHHHhcCCchhHHH-----HHHHhcCCCCchhHHHHHHHHHHHHHH
Q 016764 172 VGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIMLVSCVSGAQLSN-----YATFLTDPPLAPLSIVMTSLSTATAVF 243 (383)
Q Consensus 172 ~~~fvl~Plla~~l~~l~~~~~~l~~---~~a~GlvL~a~~P~~~~s~-----v~T~lagGd~~~Lal~lt~istlla~~ 243 (383)
+.++++-=++++++++ +++.+. .+..|+-.++..-+...+| ..+..+|-+.|.-+.. +++.-
T Consensus 79 ~~K~~i~~~~g~~~~~----~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~~------i~sl~ 148 (314)
T TIGR00793 79 VTKIAVAWVVAAIASR----IIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFV------LMSLE 148 (314)
T ss_pred eHHHHHHHHHHHHHHH----HcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhhh------hhhhc
Confidence 4577776677888887 444332 2233333333332222221 2455565544222222 22333
Q ss_pred HHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhh
Q 016764 244 VTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVM 321 (383)
Q Consensus 244 ~~Pl~l~ll~g~--~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~ 321 (383)
--|+...+..|. -.++|+..+ +-.++|+++|+++-..-|++.+-+.+-.+.+ ...+.+..+. ..|-+++.
T Consensus 149 ~GPf~TMi~LG~sGlA~ip~~~l-----v~~ilPlliG~ilGNLD~~~r~fl~~~~~~l-IpFf~FaLGa--ginl~~i~ 220 (314)
T TIGR00793 149 SGPLMTMVILGTAGIASFEPHVF-----VGAVLPFLVGFALGNLDPELRDFFSKAVQTL-IPFFAFALGN--TIDLGVII 220 (314)
T ss_pred cCcHHHHHHHhhccCCCCCHHHH-----HHHHHHHHHHHHHhcCCHHHHHHhccCCCee-eehhhhhhcC--CCCHHHHH
Confidence 345555555553 245776644 5678899999999988877766655543321 1112222221 12333443
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 322 SPFGLTILLLIITFHLSAFVAGYVVTGLA 350 (383)
Q Consensus 322 ~~~~~~i~l~~~ll~~~gf~lG~llar~l 350 (383)
+. +..-++..++...+.....|+.-|.+
T Consensus 221 ~a-Gl~GIlLGl~v~~vtG~~~~~~dr~~ 248 (314)
T TIGR00793 221 QT-GLLGILLGVSVIILTGIPLILADKFI 248 (314)
T ss_pred Hh-CcchHHHHHHHHHHHhHHHHHHHHHh
Confidence 32 22222333334445555666766654
No 18
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.88 E-value=0.45 Score=45.69 Aligned_cols=147 Identities=17% Similarity=0.227 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHH--HHHHHHhhhhccCC--ChhHHHHHHHHhcCC
Q 016764 135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTISVSVFGL--PTPIGAGIMLVSCVS 210 (383)
Q Consensus 135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Pll--a~~l~~l~~~~~~l--~~~~a~GlvL~a~~P 210 (383)
......+.+++|..|+++|.+++++..|+...+ -...+ +.|.. ++..+. .++. ......|..+....|
T Consensus 45 ~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~lg~~ls~Ts~ 116 (273)
T TIGR00932 45 HLAEFGVILLMFLIGLELDLERLWKLRKAAFGV---GVLQV-LVPGVLLGLLLGH----LLGLALGAAVVIGIILALSST 116 (273)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhHH
Confidence 345568889999999999999998865443222 22222 23522 232333 2333 333444444443332
Q ss_pred chhHHHHHHH--hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016764 211 GAQLSNYATF--LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 288 (383)
Q Consensus 211 ~~~~s~v~T~--lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~ 288 (383)
+... .++.. +.+.+.-.+.+....++-+++.+..-+......+.. .+..+....+...+..-+..+.+.|+..+.
T Consensus 117 ~v~~-~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
T TIGR00932 117 AVVV-QVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLKVFLAFLLLVLLGRWLLRP 193 (273)
T ss_pred HHHH-HHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22332 234443245566667788888877766655543221 122222333333333344455555554444
Q ss_pred hhhh
Q 016764 289 ICNA 292 (383)
Q Consensus 289 ~~~~ 292 (383)
..++
T Consensus 194 ~~~~ 197 (273)
T TIGR00932 194 VLRL 197 (273)
T ss_pred HHHH
Confidence 3333
No 19
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.83 E-value=0.66 Score=46.86 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=83.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHH-HHHH
Q 016764 142 GFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATF 220 (383)
Q Consensus 142 ~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~-v~T~ 220 (383)
.++=...|.+++.+++.+..++|...+...+......-+.+|.+.+ .-.+|. ..++. +++|||.+.. .+++
T Consensus 65 ~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r----~~~~~~--~Ta~~--gs~PGgas~m~~iA~ 136 (352)
T COG3180 65 VILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKR----FSILPG--NTAFL--GSSPGGASAMVSIAQ 136 (352)
T ss_pred HHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH----hcCCCc--chhhH--hcCCchHHHHHHHHH
Confidence 3333458999999999998888988888888888888888999887 223454 44444 9999999875 4888
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016764 221 LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG 254 (383)
Q Consensus 221 lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g 254 (383)
-.|.|. .....+..+=-+.-..+.|+...++.|
T Consensus 137 d~gAd~-~~VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 137 DYGADL-RLVALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred HhCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889998 788888888888888899999999885
No 20
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.39 E-value=0.71 Score=49.38 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhccCcc--hh--hhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhc
Q 016764 111 LPHVVLGSTMLALVFPPS--FT--WFTARYYAPALGFLMFAVGVNSSEKDFIEAFKR 163 (383)
Q Consensus 111 l~~~vl~~~~lGl~~P~~--~~--~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~ 163 (383)
+...+++++++|-..+.. ++ ...+.....++.+++|..|++++++++++..+.
T Consensus 33 ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~ 89 (562)
T PRK05326 33 LLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGP 89 (562)
T ss_pred HHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHH
Confidence 344456666666533221 11 111234567899999999999999999976644
No 21
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=96.20 E-value=0.38 Score=42.91 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHH
Q 016764 136 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS 215 (383)
Q Consensus 136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s 215 (383)
....+..++-...|++.+.+++++..+.+...+...+...++.=..++.+.+ ..+.+. ..+ +.+++|||...
T Consensus 48 ~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~----~~~~~~--~ta--~La~~PGGl~~ 119 (156)
T TIGR03082 48 LLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLAR----LTGVDP--LTA--FLATSPGGASE 119 (156)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCH--HHH--HHHhCCchHHH
Confidence 3455666666779999999999998877776666555555555555666666 455554 444 46899999987
Q ss_pred H-HHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764 216 N-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 251 (383)
Q Consensus 216 ~-v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~l 251 (383)
. ..+.-.|.|. +.......+=.++-.++.|++..+
T Consensus 120 m~~~A~~~gad~-~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 120 MAALAAELGADV-AFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 4667778898 677777777777777788876653
No 22
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.16 E-value=1.1 Score=48.67 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC--hhHHHHHHHHhcCCchh
Q 016764 136 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQ 213 (383)
Q Consensus 136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~--~~~a~GlvL~a~~P~~~ 213 (383)
+.-..+.++||..|+.++++++++..|+ ++..-..|.++.-+++++++. .++.+ ..+..|..+..++ ++.
T Consensus 59 laelGvv~LlF~iGLEl~~~~l~~~~~~---~~~~g~~qv~~~~~~~~~~~~----~~g~~~~~al~ig~~la~SS-tai 130 (621)
T PRK03562 59 FAEFGVVLMLFVIGLELDPQRLWKLRRS---IFGGGALQMVACGGLLGLFCM----LLGLRWQVALLIGLGLALSS-TAI 130 (621)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHH-HHH
Confidence 4456888999999999999999875433 222222344443334444444 33433 3444555544333 333
Q ss_pred HHHHHHH
Q 016764 214 LSNYATF 220 (383)
Q Consensus 214 ~s~v~T~ 220 (383)
...++..
T Consensus 131 v~~~L~e 137 (621)
T PRK03562 131 AMQAMNE 137 (621)
T ss_pred HHHHHHH
Confidence 3344443
No 23
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.12 E-value=1.1 Score=46.15 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH-HHHhhhhccCCChhHHHHHHHHhcCCchhH
Q 016764 136 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI-FGTISVSVFGLPTPIGAGIMLVSCVSGAQL 214 (383)
Q Consensus 136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~-l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~ 214 (383)
.....+.++||..|+..|.+++++..|+. ..+...--+..|+.... ...... .++..+.+..|..+. ....+..
T Consensus 61 laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~-g~~~~~al~lg~~l~-~sS~~i~ 135 (397)
T COG0475 61 LAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLLLGIL-GLSLIAALFLGAALA-LSSTAIV 135 (397)
T ss_pred HHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHH-HHHHHHH
Confidence 45668999999999999999999876553 22222223344533222 211000 234444555555543 3334444
Q ss_pred HHHHHHh--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC-hHHHHHHHHHHHHHHHHHH
Q 016764 215 SNYATFL--TDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD-VKGMVSSILQIVVVPIAAG 279 (383)
Q Consensus 215 s~v~T~l--agGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id-~~~i~~~Lll~VllPl~lG 279 (383)
+.++..+ .+.+.-...+....+.-+.+..+..+...+..+...+.+ ...+...+.....+=..+|
T Consensus 136 ~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g 203 (397)
T COG0475 136 LKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG 203 (397)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 333321345556666666666666665555433333333 2333434333333333334
No 24
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.96 E-value=0.23 Score=49.76 Aligned_cols=230 Identities=17% Similarity=0.288 Sum_probs=118.5
Q ss_pred chHHHHHHHhhh-HHHHHHHHHHHHHhccCcchhh--hh----hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHH
Q 016764 98 FSLVNILKQSNS-FLPHVVLGSTMLALVFPPSFTW--FT----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAG 170 (383)
Q Consensus 98 ~~~~~~l~~l~~-~l~~~vl~~~~lGl~~P~~~~~--~~----~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~ 170 (383)
|++++.++++-. .+.+=++.+..+.-++|+.... +. +.-..+.+++.+|.+|.+++.++....++|...++
T Consensus 3 ~~~~~~~~kiPgg~m~vpl~~g~~i~tf~P~~~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l~-- 80 (326)
T PRK05274 3 MKIKRTIEKIPGGMMLVPLLLGALINTFAPGALYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTLL-- 80 (326)
T ss_pred chHHHHhccCCcceeeHHHHHHHHHHHhCCcceeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhHH--
Confidence 445555444443 2333367788889999995321 11 12345688999999999999999998887755433
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCh---hHHHHHHHHhc------CCchhHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 016764 171 YVGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIMLVSC------VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA 241 (383)
Q Consensus 171 l~~~fvl~Plla~~l~~l~~~~~~l~~---~~a~GlvL~a~------~P~~~~s~v~T~lagGd~~~Lal~lt~istlla 241 (383)
+.++++-=++++.+++ +++.+. ....|...... .=++......+...+. .+.-+.....+
T Consensus 81 -~~k~~~~~~~~~~~~~----~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~-~d~ga~i~lsl----- 149 (326)
T PRK05274 81 -LTKFAVAALVGVIAGK----FIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTK-EDAGAFVLMSL----- 149 (326)
T ss_pred -HHHHHHHHHHHHHhhh----cchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC-CCcchHHHHHH-----
Confidence 3455554455666665 333221 22222222221 2233333333333322 21122222222
Q ss_pred HHHHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhh
Q 016764 242 VFVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIES 319 (383)
Q Consensus 242 ~~~~Pl~l~ll~g~--~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~ 319 (383)
-.-|+....+.+. ...++..++... ++|+++|+.++.+.+++.+...+-...+--.. ........+-+.
T Consensus 150 -~~Gp~~tM~lL~aagla~~p~~~li~a-----llplliG~~lgnl~~~l~~~~~~Gi~~lLp~~---~~~lG~~l~lq~ 220 (326)
T PRK05274 150 -EDGPFMTMLALGAAGLASFPPPALVGA-----VLPLLVGFILGNLDPELRQFLGKAVPVLIPFF---AFALGNGIDLGT 220 (326)
T ss_pred -hhhHHHHHHHHHhhCcccCCCchhhHH-----HHHHHHHHHHHhHHHhhHHHhcCCcEEEHHHH---HHHHhcceeHhH
Confidence 2224333333332 124555544322 29999999999987777666666544311111 111122223333
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 320 VMSPFGLTILLLIITFHLSAFVAGYVVTGLA 350 (383)
Q Consensus 320 i~~~~~~~i~l~~~ll~~~gf~lG~llar~l 350 (383)
+.. .++.-++..+..+++....+|+..|.+
T Consensus 221 i~~-~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 221 IIT-AGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHh-cCCcchhhhhhHhhccchhhHhHhhee
Confidence 333 233333444556666677788888765
No 25
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.48 E-value=4.4 Score=43.30 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764 135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187 (383)
Q Consensus 135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~ 187 (383)
......+.++||..|++++.+++++.. +....+...++++.-+++++++.
T Consensus 59 ~la~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 108 (558)
T PRK10669 59 ELAELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALSA 108 (558)
T ss_pred HHHHHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568889999999999999997642 33333444555554455555554
No 26
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=95.08 E-value=4 Score=41.06 Aligned_cols=168 Identities=21% Similarity=0.317 Sum_probs=93.5
Q ss_pred HHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhc
Q 016764 143 FLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLT 222 (383)
Q Consensus 143 l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~la 222 (383)
++++..|.-.|+ ...+.|||..+++...|+.+. .++..+. .++.++..+.++-+.+.+=|.++-.+-+.++
T Consensus 74 LIF~GIGAmtDF---gpllanP~~~llGaaAQ~Gif--~t~~~A~----~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA 144 (360)
T PF03977_consen 74 LIFMGIGAMTDF---GPLLANPKTLLLGAAAQFGIF--ATFLGAI----LLGFTPKEAASIGIIGGADGPTSIFVSSKLA 144 (360)
T ss_pred HHHHHHhHHHhh---HHHHhCHHHHHHHHHHHHhHH--HHHHHHH----HhCCCHHHhhHhhhcccCCCcHHHHHHHhhh
Confidence 345567776655 455569999999999999874 4444444 4477788888888888886655444333333
Q ss_pred CCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhCCc---------cccC-----hHHHHHHHHHHHHHHH--------HHH
Q 016764 223 DPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIGKR---------LPVD-----VKGMVSSILQIVVVPI--------AAG 279 (383)
Q Consensus 223 gGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g~~---------v~id-----~~~i~~~Lll~VllPl--------~lG 279 (383)
-|. --.++..+=| .-+.++.-|-.+.++..+. -+++ ...++..++..+++|. .+|
T Consensus 145 -p~L-lgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~G 222 (360)
T PF03977_consen 145 -PHL-LGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFG 222 (360)
T ss_pred -HHH-HHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 343 1233333333 2366778888888886421 1122 1233444455555553 345
Q ss_pred HHHHHH--hhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhh
Q 016764 280 LLLNRF--FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSP 323 (383)
Q Consensus 280 ~llr~~--~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~ 323 (383)
-++|+. .+++.+..+..+-.+..+.+-+.++.. -+.+.+...
T Consensus 223 nl~rEsgv~~rLs~taqn~l~nivTi~LGl~vGat--~~a~~fL~~ 266 (360)
T PF03977_consen 223 NLLRESGVVERLSKTAQNELMNIVTIFLGLTVGAT--MTAETFLNP 266 (360)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHhcCH
Confidence 555554 244444444444344444444444433 345555553
No 27
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.00 E-value=3.6 Score=45.92 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhchh
Q 016764 138 APALGFLMFAVGVNSSEKDFIEAFKRPA 165 (383)
Q Consensus 138 ~~~l~l~mf~~Gl~l~~~~l~~~~r~p~ 165 (383)
-.++.+.+|..|++++.+.+++.++.+.
T Consensus 76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~ 103 (810)
T TIGR00844 76 RILLCLQVFAVSVELPRKYMLKHWVSVT 103 (810)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhHHHHH
Confidence 3588899999999999999987655443
No 28
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.84 E-value=4.7 Score=40.10 Aligned_cols=134 Identities=17% Similarity=0.180 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHh-cc--CcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 016764 110 FLPHVVLGSTMLAL-VF--PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFG 186 (383)
Q Consensus 110 ~l~~~vl~~~~lGl-~~--P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~ 186 (383)
.+.+.++.++++|- .+ |+..+.-.+......+-.-...+|.++++.|+.+.-. +.++...+. ....=.+++.++
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~--~~~~~~~~~-v~~~~~~~~~lg 104 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGW--KGLLIIIIV-VILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCc--cHHHHHHHH-HHHHHHHHHHHH
Confidence 45566777777774 32 2222221111223455555666899999999988643 333332222 222224455555
Q ss_pred -HhhhhccCCChhHHHHHHHHhcCCchhHHHH-HHH---hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 187 -TISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATF---LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 187 -~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v-~T~---lagGd~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
+ .++++++. .-++=++.+=||.++.+ ... --+.|. +.++..+.+-..++++..|..-..+
T Consensus 105 ~r----~~~l~~~~-~~Lia~GtsICG~SAi~A~a~~i~a~~~~~-a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 105 RR----LFGLDRKL-AILIAAGTSICGASAIAATAPVIKAKEEDV-AYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HH----HhCCCHHH-HHHHHhhcccchHHHHHHHcccccCCCCce-eeeehHHHHHHHHHHHHHHHHHHHh
Confidence 5 67888742 22333555556665543 222 223355 7889999999999999999988875
No 29
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=94.69 E-value=3.6 Score=41.83 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=63.1
Q ss_pred HHHHHhcCCCCHHHHHHHHhchhHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHh
Q 016764 143 FLMFAVGVNSSEKDFIEAFKRPAAIFA-GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL 221 (383)
Q Consensus 143 l~mf~~Gl~l~~~~l~~~~r~p~~ll~-~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~l 221 (383)
++++..|.-.|+. ..+.|||..++ +...|+.+. ..+..+. .++.++..+.++-+.+.+=|.++-.+-+.+
T Consensus 110 LIFlGIGAMtDFg---pllanP~~~ll~gaaAQ~GiF--~t~~~A~----~lGF~~~eAAsIgIIGgADGPTaIf~s~kL 180 (399)
T TIGR03136 110 ILFFGIGAMSDIS---FILARPWASITVALFAEMGTF--ATLVIGY----YCGLTPGEAAAVGTIGGADGPMVLFASLIL 180 (399)
T ss_pred HHHHhccHHhcch---HHHhChHHHHHHHHHHHhhHH--HHHHHHH----HcCCCHHHhhHHhhcccCCccHHHHHHHhh
Confidence 4455677766664 55569999999 799999874 4444444 346777778888777888665554433344
Q ss_pred cCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 016764 222 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 254 (383)
Q Consensus 222 agGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g 254 (383)
+ -|. --+++..+=| .-+.++.-|-.+.++..
T Consensus 181 A-p~L-lg~IaVAAYsYMaLVPiiqPpimklLtt 212 (399)
T TIGR03136 181 A-KDL-FVPISIIAYLYLSLTYAGYPYLIKLLVP 212 (399)
T ss_pred h-hHh-HHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 3 333 1233333333 23567778888888864
No 30
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.60 E-value=4.4 Score=45.69 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHHHHhhhhccCCCh-----hHHHHHHHHhc
Q 016764 135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL-GYIFGTISVSVFGLPT-----PIGAGIMLVSC 208 (383)
Q Consensus 135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Pll-a~~l~~l~~~~~~l~~-----~~a~GlvL~a~ 208 (383)
.+....+.++||..|+.+|.+.+++..|+ .+.+++. .+ +.|++ +++++..+ .....+. .+..|+.+...
T Consensus 106 ~la~lGlillmFliGLE~Dl~~lr~~~k~--a~~ia~~-~~-ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~T 180 (832)
T PLN03159 106 TMANLGLLYFLFLVGVEMDISVIRRTGKK--ALAIAIA-GM-ALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVT 180 (832)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHhcchH--HHHHHHH-HH-HHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHh
Confidence 34566888899999999999999875433 2222222 22 23543 44444322 1111111 12222222211
Q ss_pred CCchhHHHHHH--HhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764 209 VSGAQLSNYAT--FLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 251 (383)
Q Consensus 209 ~P~~~~s~v~T--~lagGd~~~Lal~lt~istlla~~~~Pl~l~l 251 (383)
..++.+.+++ ++.+-+...+++..+.++-+++.+++-+...+
T Consensus 181 -s~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l 224 (832)
T PLN03159 181 -AFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL 224 (832)
T ss_pred -hHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222333 22344443567777788888777766555443
No 31
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.43 E-value=4.4 Score=43.90 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHh
Q 016764 136 YYAPALGFLMFAVGVNSSEKDFIEAFK 162 (383)
Q Consensus 136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r 162 (383)
+.-..+.++||..|+.++++++++..|
T Consensus 59 laelGvv~LLF~iGLel~~~~l~~~~~ 85 (601)
T PRK03659 59 FSELGVVFLMFIIGLELNPSKLWQLRR 85 (601)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 445688899999999999999987543
No 32
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.24 E-value=2.4 Score=42.27 Aligned_cols=107 Identities=7% Similarity=0.116 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHH
Q 016764 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY 217 (383)
Q Consensus 138 ~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v 217 (383)
..+-.++=...|++.+.+++++..|.....+...+......=+.++++.+ ..+.|. . -.+.+.+|||.....
T Consensus 207 ~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~----~~~~~~--~--t~~La~aPGGl~eM~ 278 (318)
T PF05145_consen 207 NAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSR----LTGIDF--L--TALLATAPGGLAEMA 278 (318)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCH--H--HHHHHhCCccHHHHH
Confidence 34445555669999999999987766555555555555555566777766 445543 3 345699999998754
Q ss_pred -HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016764 218 -ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 253 (383)
Q Consensus 218 -~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~ 253 (383)
.+.-.|.|. +.......+=.+.-.++.|++..++.
T Consensus 279 l~A~~l~~d~-~~V~~~q~~Rl~~v~~~~p~~~r~~~ 314 (318)
T PF05145_consen 279 LIALALGADV-AFVAAHQVVRLLFVLLLAPFIARWLR 314 (318)
T ss_pred HHHHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788898 78888888888888888888877764
No 33
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.03 E-value=9.9 Score=40.51 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhc--cCcchhhhh-hhhHHHHHHHHHHHhcCCCCHHHHHHHHhc
Q 016764 111 LPHVVLGSTMLALV--FPPSFTWFT-ARYYAPALGFLMFAVGVNSSEKDFIEAFKR 163 (383)
Q Consensus 111 l~~~vl~~~~lGl~--~P~~~~~~~-~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~ 163 (383)
....+++|+++|.. .|.. ... +......+..++|..|.+++.+++++..+.
T Consensus 25 ~v~lil~Gi~lg~~~~~~~~--~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~ 78 (525)
T TIGR00831 25 PIALILAGLLLGLAGLLPEV--PLDREIVLFLFLPPLLFEAAMNTDLRELRENFRP 78 (525)
T ss_pred HHHHHHHHHHHHhccccCCC--CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34445667777753 1211 011 123456888999999999999999875533
No 34
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=92.14 E-value=3.9 Score=39.00 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=68.7
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHH
Q 016764 154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM 233 (383)
Q Consensus 154 ~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~l 233 (383)
.++.+...||++.++.++..--++--..++.+++ .++++++....+.==+ =+++.+.-.+...|||. +++.+.
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~----~lg~~~~i~~Sl~pkS--vTtpiAm~vs~~iGG~~-sLta~~ 149 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLAL----LLGLGPEIIASLLPKS--VTTPIAMHVSEMIGGIP-AVTAVF 149 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCcCHHHHHHhhhHH--hhHHHHHHHHHHhCChH-HHHHHH
Confidence 3455555567788888887766666677888887 6788987776554211 13333444789999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 016764 234 TSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 234 t~istlla~~~~Pl~l~ll 252 (383)
+.++-+++..+-|.++.++
T Consensus 150 vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 150 VILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999988887
No 35
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=91.72 E-value=1.7 Score=41.06 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=70.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHH
Q 016764 155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT 234 (383)
Q Consensus 155 ~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt 234 (383)
++.+...+|++.++.+....-++--+..+.+++ .++++++....+.-=+. ++..+.-.+...|||. +++...+
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~----~lgl~~~~~~Sl~pkSV--TtpiAi~is~~iGG~~-sLta~~V 140 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLAR----LLGLSPEIILSLAPKSV--TTPIAIEISEQIGGIP-SLTAVFV 140 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCcCHHHHHHHHHHHh--hHHHHHHHHHHhCChH-HHHHHHH
Confidence 455566677888888888777777777788887 67899988777662211 2333344789999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016764 235 SLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 235 ~istlla~~~~Pl~l~ll 252 (383)
.++-+++...-|.++.++
T Consensus 141 vitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 141 VITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHHhhHHHHhHHHHHhHc
Confidence 999999999999988886
No 36
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=91.55 E-value=5.8 Score=38.00 Aligned_cols=90 Identities=10% Similarity=0.005 Sum_probs=68.9
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHH
Q 016764 156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTS 235 (383)
Q Consensus 156 ~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~ 235 (383)
+.+...|+++.++.++.+--++--+.++.+++ .++++++....+.==+ =+++.+.-.+...||+. +++.+.+.
T Consensus 85 q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~----~lgl~~~~~~Sl~pKS--VTtPIAm~is~~iGG~p-sLtA~~Vi 157 (232)
T PRK04288 85 KRDVLKKYWWQILGGIVVGSVCSVLIIYLVAK----LIQLDNAVMASMLPQA--ATTAIALPVSAGIGGIK-EITSFAVI 157 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCcCHHHHHHHhhHh--hhHHHHHHHHHHhCCcH-HHHHHHHH
Confidence 44445567888888888777777777888887 6799987766554111 13333445789999999 89999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016764 236 LSTATAVFVTPLLSLLL 252 (383)
Q Consensus 236 istlla~~~~Pl~l~ll 252 (383)
++-+++.++-|.++.++
T Consensus 158 itGi~Gai~g~~llk~~ 174 (232)
T PRK04288 158 FNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999988887
No 37
>PRK10711 hypothetical protein; Provisional
Probab=91.23 E-value=2.5 Score=40.48 Aligned_cols=91 Identities=14% Similarity=0.011 Sum_probs=69.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHH
Q 016764 155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT 234 (383)
Q Consensus 155 ~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt 234 (383)
++.+...++++.++.+...--++--..++++++ .+++++++...+.==+. +++.+.-.+...||+. +++...+
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~----~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~-sLta~~V 151 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVAL----WMGATPEIAASILPKSV--TTPIAMAVGGSIGGIP-AISAVCV 151 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcH-HHHHHHH
Confidence 344445567888888888777777788888888 67999987776652111 3333344789999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016764 235 SLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 235 ~istlla~~~~Pl~l~ll 252 (383)
.++-+++.++-|.++.++
T Consensus 152 iitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 152 IFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999887
No 38
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=91.22 E-value=2.5 Score=42.11 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=66.9
Q ss_pred HHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 016764 115 VLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFG 194 (383)
Q Consensus 115 vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~ 194 (383)
++.++++|-+.++.-+..+ +-.+..+.+..|.+|.+++++++.+.- +..++++++.-. +.=.+.+.+.+ .++
T Consensus 173 ILiGmilGNld~~~~~~l~-~Gi~f~I~f~~f~LG~~lnl~~I~~~G--~~GIlL~v~vv~-~t~~~~~~i~r----llg 244 (312)
T PRK12460 173 LVLGMILGNLDPDMRKFLT-KGGPLLIPFFAFALGAGINLSMLLQAG--LAGILLGVLVTI-VTGFFNIFADR----LVG 244 (312)
T ss_pred HHHHHHHhccchhhHHHHh-ccceEeHHHHHHHhcCCeeHHHHHHhC--hHHHHHHHHHHH-HHHHHHHHHHH----HhC
Confidence 3445555555443333333 445568888889999999999998753 444555444332 23344556666 456
Q ss_pred CChhHHHHHHHH---hcCCchhHHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 195 LPTPIGAGIMLV---SCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 195 l~~~~a~GlvL~---a~~P~~~~s~v-~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
.+... |+.+- +.+=|+.++.. ..-..+.-. +.|......+.+...++.|++..++
T Consensus 245 ~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~~-~~Ataqvaa~vivTail~P~~t~~~ 303 (312)
T PRK12460 245 GTGIA--GAAASSTAGNAVATPLAIAAADPSLAPVA-AAATAQVAASVIVTAILTPLLTSWV 303 (312)
T ss_pred CChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66643 33333 11112222111 111112222 4556666666666666666666655
No 39
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=90.72 E-value=11 Score=37.79 Aligned_cols=168 Identities=17% Similarity=0.284 Sum_probs=85.4
Q ss_pred HHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCC------ChhHHHHHHHHhcCCchhHHH
Q 016764 143 FLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL------PTPIGAGIMLVSCVSGAQLSN 216 (383)
Q Consensus 143 l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l------~~~~a~GlvL~a~~P~~~~s~ 216 (383)
++++..|.-.|+ ...+.||+..+++...|+.+.= .+..+. .++. +...+..+-+.+.+=|.++-.
T Consensus 68 LIFlGIGAmtDF---gpllanP~~~llGaaAQ~GiF~--t~~~A~----~lGf~~~~~~~~~eAAsIgIIGgADGPt~If 138 (354)
T TIGR01109 68 LIFMGIGALTDF---GPLLANPRTLLLGAAAQFGIFA--TVFGAL----TLNFFGIISFSLPQAAAIGIIGGADGPTAIY 138 (354)
T ss_pred HHHHhccHHhhh---HHHHhChHHHHHHHHHHhhHHH--HHHHHH----HhCCCcccccChhhceeeeeeccCCCchhhh
Confidence 345567776665 4555699999999999998753 334333 2233 445566666667665544333
Q ss_pred HHHHhcCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhCCc---c------ccC-----hHHHHHHHHHHHHHHH-----
Q 016764 217 YATFLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIGKR---L------PVD-----VKGMVSSILQIVVVPI----- 276 (383)
Q Consensus 217 v~T~lagGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g~~---v------~id-----~~~i~~~Lll~VllPl----- 276 (383)
+-+.++ -|. --+++..+=| .-+.++.-|-.+.++..++ + +++ ...++..++..+++|.
T Consensus 139 ~s~~la-p~L-lg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~P~a~pLi 216 (354)
T TIGR01109 139 LSGKLA-PEL-LAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLIPKALPLV 216 (354)
T ss_pred hHhhhh-hHH-HHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHccchHHHH
Confidence 222333 332 1222222222 2356677788888875421 1 121 1234444555555553
Q ss_pred ---HHHHHHHHH--hhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhh
Q 016764 277 ---AAGLLLNRF--FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSP 323 (383)
Q Consensus 277 ---~lG~llr~~--~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~ 323 (383)
.+|-++|+. .+++.+..+..+-.+..+.+-+.++.. -+.+.+...
T Consensus 217 g~Lm~GnllrEsGv~~rl~~taqn~l~nivTifLGl~vG~~--~~A~~fL~~ 266 (354)
T TIGR01109 217 GMLMFGNLMRESGVVERLSKTASNELLNIVTILLGLSVGAK--MRADKFLTP 266 (354)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccHHhhCCh
Confidence 345555554 244444444444333333333333332 355566554
No 40
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=90.27 E-value=20 Score=36.75 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=59.3
Q ss_pred HHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhh--hhccCCChhHHHHHHHHhcCCchhHHHHHHHh
Q 016764 144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIS--VSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL 221 (383)
Q Consensus 144 ~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~--~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~l 221 (383)
+++..|.-.|+ ...+.|||..+++...|+.+.-.+ ..+.++ ++..+.+...+.++-+.+.+=|.++-.+-+.+
T Consensus 140 IF~GIGAMtDF---gpLlanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL 214 (433)
T PRK15477 140 IFMGVGAMTDF---GPLLANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL 214 (433)
T ss_pred HHHhccHHhcc---hHHhhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence 44567776665 455569999999999999875433 333211 01124566667666666777555444333333
Q ss_pred cCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 016764 222 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 254 (383)
Q Consensus 222 agGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g 254 (383)
+ -|. --+++...=| .-+.|+.-|-.+.++..
T Consensus 215 A-P~L-lg~IaVAAYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15477 215 A-PEL-LGAIAVAAYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred h-hHh-HHHHHHHHHHHHHHHhcccchHHHhccC
Confidence 3 333 1233333333 23567777888888754
No 41
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=90.24 E-value=20 Score=36.73 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=59.2
Q ss_pred HHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhh--hhccCCChhHHHHHHHHhcCCchhHHHHHHHh
Q 016764 144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIS--VSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL 221 (383)
Q Consensus 144 ~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~--~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~l 221 (383)
+++..|.-.|+ ...+.|||..+++...|+.+.-.+ ..+.++ ++..+.+...+.++-+.+.+=|.++-.+-+.+
T Consensus 140 IF~GIGAMtDF---gpLlanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL 214 (433)
T PRK15476 140 IFMGVGAMTDF---GPLLANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL 214 (433)
T ss_pred HHHhccHHhcc---hHHhhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence 44557776665 455569999999999999875433 333211 01124566667666666777555444333333
Q ss_pred cCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 016764 222 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 254 (383)
Q Consensus 222 agGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g 254 (383)
+ -|. --+++...=| .-+.|+.-|-.+.++..
T Consensus 215 A-P~L-lg~IaVAAYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15476 215 A-PEL-LGAIAVAAYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred h-hHh-HHHHHHHHHHHHHHHhcccchHHHhccC
Confidence 3 333 1233333333 23567777888888754
No 42
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=90.05 E-value=21 Score=36.55 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=59.3
Q ss_pred HHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhh--hhccCCChhHHHHHHHHhcCCchhHHHHHHHh
Q 016764 144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIS--VSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL 221 (383)
Q Consensus 144 ~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~--~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~l 221 (383)
+++..|.-.|+ ...+.|||..+++...|+.+.-.+ ..+.++ ++..+.+...+.++-+.+.+=|.++-.+-+.+
T Consensus 140 IF~GIGAMtDF---gpLlanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL 214 (433)
T PRK15475 140 IFMGVGAMTDF---GPLLANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL 214 (433)
T ss_pred HHHhccHHhcc---hHHhhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence 44557776655 455569999999999999875433 333211 01124566667766666777555444333333
Q ss_pred cCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 016764 222 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 254 (383)
Q Consensus 222 agGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g 254 (383)
+ -|. --+++...=| .-+.|+.-|-.+.++..
T Consensus 215 A-P~L-lg~IaVAAYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15475 215 A-PEL-LGAIAVAAYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred h-hHh-HHHHHHHHHHHHHHHhcccchHHHhccC
Confidence 3 333 1233333333 23567777888888854
No 43
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=90.04 E-value=26 Score=36.25 Aligned_cols=179 Identities=19% Similarity=0.347 Sum_probs=89.5
Q ss_pred HHHHHHHhhhH-HHHHHHHHHHH--Hh-ccCcchhh---hhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHH
Q 016764 100 LVNILKQSNSF-LPHVVLGSTML--AL-VFPPSFTW---FTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYV 172 (383)
Q Consensus 100 ~~~~l~~l~~~-l~~~vl~~~~l--Gl-~~P~~~~~---~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~ 172 (383)
+++..++++|+ +|--++++.+. +. ..|+.+.+ +.+.+....+...+-+.|++-+.+++++.- +|-.......
T Consensus 22 Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg-~~l~~~~~~~ 100 (398)
T TIGR00210 22 LVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGG-KPLLIFLATA 100 (398)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhCh-HHHHHHHHHH
Confidence 55777888884 45545554442 12 22443321 111223334444444588888888877642 2222222221
Q ss_pred -HHHHHHHHHHHHHHHhhhhccCCChhHHHHHHH--HhcCC--ch--hHHHHHHHh--cCCCCchhHHHHHHHHHHHHHH
Q 016764 173 -GQFVVKPILGYIFGTISVSVFGLPTPIGAGIML--VSCVS--GA--QLSNYATFL--TDPPLAPLSIVMTSLSTATAVF 243 (383)
Q Consensus 173 -~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL--~a~~P--~~--~~s~v~T~l--agGd~~~Lal~lt~istlla~~ 243 (383)
.-....=.++.+++. .++++| ..|++. ++..- |+ .....+... ..+-. +++++..++..+.+.+
T Consensus 101 ~~l~~~Qn~vGv~la~----~~gl~P--~~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~-~lgla~AT~GLv~g~l 173 (398)
T TIGR00210 101 VGFLVIQNAVGIGMAS----LLGQAP--LMGLLAGSITLSGGHGTGAAWSPVFYDNYGFRNAT-EIAIACATFGLVFGGI 173 (398)
T ss_pred HHHHHHHHHHHHHHHH----HcCCCh--HHHHHhhCccCCCCCcHHHHHHHHHHHHcCchhHH-HHHHHHHHHHHHHHHH
Confidence 111222244555555 678888 667663 22222 22 223344332 12223 4677777777777776
Q ss_pred H-HHHHHHHhhC-----C--c----c-----------ccChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016764 244 V-TPLLSLLLIG-----K--R----L-----------PVDVKGMVSSILQIVVVPIAAGLLLNRFFP 287 (383)
Q Consensus 244 ~-~Pl~l~ll~g-----~--~----v-----------~id~~~i~~~Lll~VllPl~lG~llr~~~p 287 (383)
. .|+.=++.-. + + . ..+..+++.++ ..+.+-+.+|..+.++..
T Consensus 174 iGgpi~~~lirk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~i~iai~iG~~i~~~l~ 239 (398)
T TIGR00210 174 IGGPVAKFLIIRNKLEPNCENDTKDVTIGFERPQDNRQITYNSLIETI-ALIAVCLLVGYELNDLVA 239 (398)
T ss_pred HHHHHHHHHHHcCCCCCCCCcccccccccccccccccccCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 6 5665554311 0 0 0 02233444444 577778888888887654
No 44
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=88.58 E-value=31 Score=35.19 Aligned_cols=179 Identities=13% Similarity=0.241 Sum_probs=90.8
Q ss_pred HHHHHHHhhhH-HHHHHHHHHHHHhccCcchhhhh------hh-hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHH
Q 016764 100 LVNILKQSNSF-LPHVVLGSTMLALVFPPSFTWFT------AR-YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY 171 (383)
Q Consensus 100 ~~~~l~~l~~~-l~~~vl~~~~lGl~~P~~~~~~~------~~-~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l 171 (383)
+++.+++++|+ .|--++++.+ +.+.+....... +. +....+...+-.+|++.+.+.+++..|+-.......
T Consensus 22 Lr~ki~~lqk~~IPasvIgGli-~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~ 100 (368)
T PF03616_consen 22 LRAKIPFLQKLFIPASVIGGLI-FAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIA 100 (368)
T ss_pred HHHHhHHHHHccCCchHHHHHH-HHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHH
Confidence 56778888884 4544454444 333332221111 11 222333333445899999988887654322211111
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcC-----CchhHH--HHHHHhcC--CCCchhHHHHHHHHHHHHH
Q 016764 172 VGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCV-----SGAQLS--NYATFLTD--PPLAPLSIVMTSLSTATAV 242 (383)
Q Consensus 172 ~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~-----P~~~~s--~v~T~lag--Gd~~~Lal~lt~istlla~ 242 (383)
....++-=+++.+++. +++++|. .|++. +.. +|+..+ +.+....| |-. +++++..++..+.+.
T Consensus 101 ~~~~~~Q~~vG~~la~----l~gl~p~--~Gll~-Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~-~vg~a~AT~Glv~G~ 172 (368)
T PF03616_consen 101 IILAFLQNIVGLGLAK----LLGLDPL--FGLLA-GSIGFTGGHGTAAAFGPTFEELYGWEGAT-SVGMAAATFGLVVGG 172 (368)
T ss_pred HHHHHHHHHHHHHHHH----HhCCCch--HHHHh-ccccccCCccHHHHHHHHHHHhcChhhhH-HHHHHHHHHHHHHHH
Confidence 1122233344556665 5677774 56533 222 333333 34544311 222 467777777777665
Q ss_pred HH-HHHHHHHhhC-----C-------------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016764 243 FV-TPLLSLLLIG-----K-------------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 288 (383)
Q Consensus 243 ~~-~Pl~l~ll~g-----~-------------------~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~ 288 (383)
++ .|+.=++.-. + .-+++..+++..+ .++.+.+.+|..++.+..+
T Consensus 173 liGgpi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l-~~i~i~~~~G~~i~~~l~~ 242 (368)
T PF03616_consen 173 LIGGPIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHL-ALILIAIGLGYIISALLKK 242 (368)
T ss_pred HHHHHHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 54 7875554310 0 0113455555555 4778888888888877643
No 45
>COG2855 Predicted membrane protein [Function unknown]
Probab=87.31 E-value=35 Score=34.44 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhccCcchhhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764 111 LPHVVLGSTMLALVFPPSFTWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187 (383)
Q Consensus 111 l~~~vl~~~~lGl~~P~~~~~~~---~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~ 187 (383)
+.+.++.++++|.+ ++...... +-..+..+-+-...+|.+++++|+.+.-.+--.+. +......=+.++.+++
T Consensus 40 l~lAIllGi~l~~l-~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~---~~~l~~t~~~~~~lg~ 115 (334)
T COG2855 40 LTLAILLGILLGIL-PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLII---AITLSSTFLFAYFLGK 115 (334)
T ss_pred HHHHHHHHHHHhcc-ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHH---HHHHHHHHHHHHHHHH
Confidence 55667788888833 33332221 12345566666666899999999988643322221 2222223355777777
Q ss_pred hhhhccCCChhHHHHHHHHhcCCchhHHHHHH-Hhc---CCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT-FLT---DPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 188 l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T-~la---gGd~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
.+++|...+ -++=+++.=||.++.+-+ -.. +-|. +.++..+.+-..++.+..|..-.++
T Consensus 116 ----~lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~ev-a~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 116 ----LLGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEV-AVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred ----HhCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCcccc-ceehhhHHHHHHHHHHHHHHHHHHh
Confidence 678887433 233356666777664322 222 2345 6777777777778889999887765
No 46
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=87.01 E-value=32 Score=35.00 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHH-
Q 016764 139 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY- 217 (383)
Q Consensus 139 ~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v- 217 (383)
.+-.++....|++.+-..+++..|--...+...+..+.+.=..++++.+ ..+.|. .. .+.+.+|||.....
T Consensus 241 va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~----~~~i~~--~t--a~La~sPGGl~~ma~ 312 (352)
T COG3180 241 VAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSW----LTGIDL--NT--AYLATSPGGLDTMAA 312 (352)
T ss_pred HHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHH----hcCCCH--HH--HHHHcCCCcHHHHHH
Confidence 3444555668999999999887665555555555555665666777776 445554 33 35599999998765
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 218 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 218 ~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
.+...+-|. +...++..+=-+.-.++.|.+..++
T Consensus 313 ~A~~l~ad~-a~V~a~q~lRll~il~i~p~l~r~l 346 (352)
T COG3180 313 IAAALGADP-AFVMALQVLRLLFILLLGPALARFL 346 (352)
T ss_pred HHHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555588 7888888887777777778776665
No 47
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.60 E-value=22 Score=38.68 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=67.8
Q ss_pred HHHHHhccCcch--hhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016764 118 STMLALVFPPSF--TWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSV 192 (383)
Q Consensus 118 ~~~lGl~~P~~~--~~~~---~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~ 192 (383)
+.+.|...++.- .... ++.--..+.+.+...|+++|+..+.+ +|..++...+.-++..++..++.++ .
T Consensus 246 AFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~----~ 318 (621)
T PRK03562 246 AFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLAR----P 318 (621)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 445666666531 1111 12223355666667899999977764 4555555555667888888888887 4
Q ss_pred cCCCh--hHHHHHHHHhcCCchhHHHHHHHh--cCC--CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 193 FGLPT--PIGAGIMLVSCVSGAQLSNYATFL--TDP--PLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 193 ~~l~~--~~a~GlvL~a~~P~~~~s~v~T~l--agG--d~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
++.+. ....|+ ..+++|-.+-+.... ..| |. .....++ +..+++.+++|++..++
T Consensus 319 ~g~~~~~a~~~gl---~L~~~Gef~~vl~~~a~~~~~i~~-~~~~~lv-~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 319 LGVPRKQRRWFAV---LLGQGGEFAFVVFGAAQMANVLEP-EWAKLLT-LAVALSMAATPLLLVLL 379 (621)
T ss_pred hCCCHhHHHHHHH---HHhccccHHHHHHHHHHHCCCCCH-HHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 55544 445554 334555555443222 222 22 2222222 35567777888776553
No 48
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=85.56 E-value=2 Score=42.71 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccCh----HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016764 271 IVVVPIAAGLLLNRFFPRICNAIRPFLPP----LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV 346 (383)
Q Consensus 271 ~VllPl~lG~llr~~~p~~~~~i~~~l~~----ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~ll 346 (383)
..++.+++|++++.+..+..+++++-.+. +-..++++. .+..+-+.+.+ .++..++...+.....+.++|++
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl---G~~l~~~~i~~-~G~~~~~~~~~~v~~~~~~~~~l 103 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL---GFRLSFSDILA-LGWKGLLIIIIVVILTFLLTYWL 103 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH---CccccHHHHHH-hCccHHHHHHHHHHHHHHHHHHH
Confidence 44567779999997433333444443332 223333221 12223333444 35444566677778888999999
Q ss_pred HHHhhhccccccccceeeEeeeccCChHHhhhhh
Q 016764 347 TGLAFAEAHDVKALQRTLSYETGVMFLYNKILYS 380 (383)
Q Consensus 347 ar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA 380 (383)
++++++.++ +...-++-.++..=.+-+++++
T Consensus 104 g~r~~~l~~---~~~~Lia~GtsICG~SAi~A~a 134 (305)
T PF03601_consen 104 GRRLFGLDR---KLAILIAAGTSICGASAIAATA 134 (305)
T ss_pred HHHHhCCCH---HHHHHHHhhcccchHHHHHHHc
Confidence 944556653 4445555555555555444444
No 49
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=85.36 E-value=0.079 Score=53.08 Aligned_cols=147 Identities=18% Similarity=0.267 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHH--HHHHHHh-hhhccCCChhHHHHHHHHhcCCc
Q 016764 135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTI-SVSVFGLPTPIGAGIMLVSCVSG 211 (383)
Q Consensus 135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Pll--a~~l~~l-~~~~~~l~~~~a~GlvL~a~~P~ 211 (383)
......+.++||..|.++|.+++++..++.-.... ..++ .|.. ++.+... +..-.+.......|.++....|+
T Consensus 50 ~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~ 125 (380)
T PF00999_consen 50 LLAEIGLAFLLFEAGLELDIKELRRNWRRALALGL---VGFL-LPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPA 125 (380)
T ss_dssp SSHHHHS--SSHHHHTTGGGG-----------------------------------------------TTHHHHTT--HH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccc---ceee-ehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccccc
Confidence 56778999999999999999999987666332221 1221 2222 2222210 00012444556666666666666
Q ss_pred hhHHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 212 AQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF 286 (383)
Q Consensus 212 ~~~s~v-~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~ 286 (383)
.....+ =....+++.-.+....+.++...+.+...+..... ++....+.......++..+..=.++|...++..
T Consensus 126 ~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (380)
T PF00999_consen 126 IVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQLLLSFLWIILIGIVIGLLFGWLL 200 (380)
T ss_dssp HHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-----------------------------------------
T ss_pred chhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccchhcchhhhhhhheeeecccchHH
Confidence 555433 22344555434455667777888887777766665 333444544444444444444444444444433
No 50
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=85.16 E-value=32 Score=31.90 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=66.8
Q ss_pred HHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHH--HHHHHH-hchhHHHHHHHHHHHHHHHH-HHHHHHhh
Q 016764 114 VVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEK--DFIEAF-KRPAAIFAGYVGQFVVKPIL-GYIFGTIS 189 (383)
Q Consensus 114 ~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~--~l~~~~-r~p~~ll~~l~~~fvl~Pll-a~~l~~l~ 189 (383)
.++.+.++|+......+.. +....+.+.+++|.+|+++.-+ .+++.. -+++.+.+.+.. ++--++ ++..+.
T Consensus 4 ~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t--IlGSllgg~l~~~-- 78 (191)
T PF03956_consen 4 ALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT--ILGSLLGGLLASL-- 78 (191)
T ss_pred eHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHH--
Confidence 3577889999888774433 4678899999999999988655 343333 234444433332 222233 333333
Q ss_pred hhccCCChhHHHHHHHHhcCCchhH--HHHHHHhcCCCCchhHHHHHHHHH----HHHHHHHHHHHHHh
Q 016764 190 VSVFGLPTPIGAGIMLVSCVSGAQL--SNYATFLTDPPLAPLSIVMTSLST----ATAVFVTPLLSLLL 252 (383)
Q Consensus 190 ~~~~~l~~~~a~GlvL~a~~P~~~~--s~v~T~lagGd~~~Lal~lt~ist----lla~~~~Pl~l~ll 252 (383)
+++.+. ..++.+.+ --|-. |.++-...+| . .+. +...++| +++.+.+|++...+
T Consensus 79 --ll~~~~--~~~lav~s--G~GwYSlsg~~i~~~~~-~-~~G-~iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 79 --LLGLSL--KESLAVAS--GFGWYSLSGVLITQLYG-P-ELG-TIAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred --HhcCCH--HHHHHHHc--cCcHHHhHHHHHHhhhC-H-HHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345554 33333222 11222 2333222233 1 232 3334444 47888999988843
No 51
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=85.10 E-value=46 Score=33.64 Aligned_cols=133 Identities=11% Similarity=-0.001 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcc-Ccchhhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 016764 111 LPHVVLGSTMLALVF-PPSFTWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFG 186 (383)
Q Consensus 111 l~~~vl~~~~lGl~~-P~~~~~~~---~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~ 186 (383)
+.+.++.++++|-.+ |+..+..+ +-.....+-.-...+|.+++++|+.+.-. +.+......-...+ ++++.++
T Consensus 34 ~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~--~~l~~~~~~v~~~~-~~~~~~g 110 (335)
T TIGR00698 34 LFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGP--NEIVADTLILTSTF-FLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhH--HHHHHHHHHHHHHH-HHHHHHH
Confidence 344566666666533 22222222 11223455555566899999999987643 33222222211111 2233343
Q ss_pred -HhhhhccCCChhHHHHHHHHhcCCchhHHHH-HHHhcC---CCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 187 -TISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTD---PPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 187 -~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v-~T~lag---Gd~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
+ .++++++.+ -++=.+.+=||.++.+ .....+ -|. ++++..+.+-..++.+..|++-.++
T Consensus 111 ~k----~l~l~~~~~-~Lia~GtsICGaSAi~A~a~~i~A~~~~~-a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 111 SS----RLKLDKQMS-ILLGAGSSICGAAAVAAIEPVIKAEKEKV-SVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HH----HhCCChhHH-HHHHcchhHHHHHHHHHhccccCCCccce-eeeehHHHHHHHHHHHHHHHHHHHH
Confidence 4 567776432 2222444446655433 222222 355 6888888888999999999987766
No 52
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=84.39 E-value=15 Score=35.03 Aligned_cols=88 Identities=22% Similarity=0.193 Sum_probs=68.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhH---HHHHHHhcCCCCchhHH
Q 016764 155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL---SNYATFLTDPPLAPLSI 231 (383)
Q Consensus 155 ~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~---s~v~T~lagGd~~~Lal 231 (383)
|++....|+|+.++.+.+.--++-=..++++++ .+++++++...+ .|=... +.-.+...||-. +++.
T Consensus 81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak----~~g~~~~~~~Sl-----~PkSvTTpiAm~vs~~iGGip-~lta 150 (230)
T COG1346 81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAK----LFGLSPELILSL-----LPKSVTTPIAMEVSESIGGIP-ALTA 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHh-----cccccccHHHHHHHHhcCCch-HHHH
Confidence 555566678899888888766666677788887 789998766544 464333 334789999998 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016764 232 VMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 232 ~lt~istlla~~~~Pl~l~ll 252 (383)
..+.++-+++-++-|.++..+
T Consensus 151 v~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 151 VFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988887
No 53
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=83.22 E-value=60 Score=33.55 Aligned_cols=181 Identities=17% Similarity=0.292 Sum_probs=95.7
Q ss_pred chHHHHHHHhhhH-HHHHHHHHHHHHhccCcchhhhh-----hhhHHHHHHHHHH-HhcCCCCHHHHHHHHhchhHHHHH
Q 016764 98 FSLVNILKQSNSF-LPHVVLGSTMLALVFPPSFTWFT-----ARYYAPALGFLMF-AVGVNSSEKDFIEAFKRPAAIFAG 170 (383)
Q Consensus 98 ~~~~~~l~~l~~~-l~~~vl~~~~lGl~~P~~~~~~~-----~~~i~~~l~l~mf-~~Gl~l~~~~l~~~~r~p~~ll~~ 170 (383)
..++++++++++| .|--++++.+..++.|-..+... +.-++-.+.+++| .+|++-+++.+++.-|.- .+.+.
T Consensus 22 ~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~fmliFFttiglsa~~~~lkkgGk~l-~if~~ 100 (404)
T COG0786 22 RFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDVFMLIFFATIGLSASFKLLKKGGKKL-AIFLA 100 (404)
T ss_pred HHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCCcccccHHHHHHHHHhccccchhHHHhcChhH-HHHHH
Confidence 3466888888884 45445666655555554432111 1223334444444 499999999998765442 22221
Q ss_pred HHHHH-HHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCC-------chhHHHHHHHhcCCCC-chhHHHHHHHHHHHH
Q 016764 171 YVGQF-VVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVS-------GAQLSNYATFLTDPPL-APLSIVMTSLSTATA 241 (383)
Q Consensus 171 l~~~f-vl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P-------~~~~s~v~T~lagGd~-~~Lal~lt~istlla 241 (383)
...-+ ++-=.++.+++. +.+++| ..|++. +..+ ++.+++.+..+ |-+. -+++++..+...+.+
T Consensus 101 ~a~~l~~~Qn~igi~la~----~lgidp--l~glla-gsIsl~GGHGtaAA~~~~f~~~-G~~~A~~va~A~ATfGlv~G 172 (404)
T COG0786 101 TAAGLAVLQNFIGIGLAK----LLGLDP--LIGLLA-GSISLVGGHGTAAAWGPTFEDL-GAEGATEVAMASATFGLVAG 172 (404)
T ss_pred HHHHHHHHHHHHHHHHHH----HcCccH--HHHHHh-cceeecCCCchHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHh
Confidence 11111 111233444554 557777 566654 2232 22234556555 3222 134555566666666
Q ss_pred HHH-HHHHHHHhhC--------Cc----------------cccChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016764 242 VFV-TPLLSLLLIG--------KR----------------LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 288 (383)
Q Consensus 242 ~~~-~Pl~l~ll~g--------~~----------------v~id~~~i~~~Lll~VllPl~lG~llr~~~p~ 288 (383)
.+. .|+-=++.-. +. ..+|...+.+. +.++.+-+.+|..+.++.++
T Consensus 173 gliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~i~i~~~vG~~i~~~l~~ 243 (404)
T COG0786 173 GLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIET-LAIIAICLAVGKIINQLLKS 243 (404)
T ss_pred HhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 554 6776666521 00 12344344444 46888889999998888754
No 54
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.73 E-value=44 Score=36.20 Aligned_cols=126 Identities=15% Similarity=0.218 Sum_probs=70.0
Q ss_pred HHHHHHhccCcchh--hhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016764 117 GSTMLALVFPPSFT--WFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS 191 (383)
Q Consensus 117 ~~~~lGl~~P~~~~--~~~---~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~ 191 (383)
++.+.|..+|+.-. ... ++.-...+.+.+...|+++++..+.+ +|..++...+.-++..++..++.++
T Consensus 242 GAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~---- 314 (601)
T PRK03659 242 GTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLAR---- 314 (601)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34456777775321 111 12223456666677899999987764 4555555556667788888888877
Q ss_pred ccCCChh--HHHHHHHHhcCCchhHHHHHHHh--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 192 VFGLPTP--IGAGIMLVSCVSGAQLSNYATFL--TDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 192 ~~~l~~~--~a~GlvL~a~~P~~~~s~v~T~l--agGd~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
.++.+.. ...|+. ..|.|-.+-+.... ..|-..+-.........+++.+++|++..++
T Consensus 315 ~~g~~~~~al~~g~~---L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 315 LYGLRSSERMQFAGV---LSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred HhCCCHHHHHHHHHH---HhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566553 344433 46666666543222 2221111122222445566667788776653
No 55
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=81.45 E-value=83 Score=33.96 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcc---Ccch-hhhh-hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHH
Q 016764 112 PHVVLGSTMLALVF---PPSF-TWFT-ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIF 185 (383)
Q Consensus 112 ~~~vl~~~~lGl~~---P~~~-~~~~-~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~-ll~~l~~~fvl~Plla~~l 185 (383)
.+.++.|+++|... +... ..+. +......+..++|-.|.+++.+++++.++.--. ...+.+.+.+++-...+.+
T Consensus 39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~ 118 (559)
T TIGR00840 39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI 118 (559)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777542 2110 0111 234456889999999999999999987754222 2233344555554545544
No 56
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=80.05 E-value=22 Score=35.41 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=40.4
Q ss_pred HhhhHHHHHHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHH
Q 016764 106 QSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVG 173 (383)
Q Consensus 106 ~l~~~l~~~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~ 173 (383)
.+...+| ++.+.++|-+-|+.-+.+. +..+..+.++-|..|.+++++++.+.- -..+++++.+
T Consensus 171 lv~~ilP--lliG~ilGNLD~~~r~fl~-~~~~~lIpFf~FaLGaginl~~i~~aG--l~GIlLGl~v 233 (314)
T TIGR00793 171 FVGAVLP--FLVGFALGNLDPELRDFFS-KAVQTLIPFFAFALGNTIDLGVIIQTG--LLGILLGVSV 233 (314)
T ss_pred HHHHHHH--HHHHHHHhcCCHHHHHHhc-cCCCeeeehhhhhhcCCCCHHHHHHhC--cchHHHHHHH
Confidence 3444455 3556677777776665554 667778888889999999998886531 2334444443
No 57
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=79.34 E-value=14 Score=36.96 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=35.3
Q ss_pred HHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHH
Q 016764 116 LGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVG 173 (383)
Q Consensus 116 l~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~ 173 (383)
+.+.++|-+-|+.-+.+. +..+..+.++-|..|.+++.+++.+.- -..+++++.+
T Consensus 179 iiG~iLGNLD~~~r~fl~-~~~~~lIPF~~f~lGa~inl~~i~~aG--l~GIlLgv~~ 233 (314)
T PF03812_consen 179 IIGMILGNLDPDFRKFLA-PGVPILIPFFGFALGAGINLSNIIKAG--LSGILLGVIV 233 (314)
T ss_pred HHHHHHhcCCHHHHHHHh-cCCCeeeehhhhhhcCCCCHHHHHHhC--cchHHHHHHH
Confidence 556666666666655554 556677888888888888888877642 2334444443
No 58
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=78.98 E-value=11 Score=37.24 Aligned_cols=105 Identities=11% Similarity=0.199 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHH--hh-hhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 016764 263 GMVSSILQIVVVPIAAGLLL-NRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLS 338 (383)
Q Consensus 263 ~i~~~Lll~VllPl~lG~ll-r~~--~p-~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~ 338 (383)
.++.++ .-+++-+.+|.++ ||. .+ +..+.+++..-.+..-++++.. ++.......+...+............
T Consensus 5 ~~~~~i-lpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T TIGR00946 5 VILETV-LPILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHS---ISTTLADILQKSQSPVVLFLWGAFSG 80 (321)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 5677788899999 775 23 3444555554444444443321 11111100011111222333344556
Q ss_pred HHHHHHHHHHHhhhccccccccceeeEeeeccCChH
Q 016764 339 AFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLY 374 (383)
Q Consensus 339 gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~ 374 (383)
.+.++|.++|.+++.++ +++.+..+.++..|.+
T Consensus 81 ~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~N~~ 113 (321)
T TIGR00946 81 SYALIWLITKPLFKADY---GKLSGFLLVSALPNTA 113 (321)
T ss_pred HHHHHHHHHHHHHhccc---chhhHHHHHhhhccce
Confidence 78888888874444443 5677777888887754
No 59
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=76.52 E-value=52 Score=30.62 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHH
Q 016764 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 307 (383)
Q Consensus 229 Lal~lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~lll 307 (383)
.++..+.+-++.++..-++.=++. +..++++.++..-++.+-.+=-..-++++++.|+..+.+..+++.+..=|.++
T Consensus 40 mGlav~~V~~~s~~~~~~i~~~il--~p~~l~~lr~~~filvIA~~V~~ve~~l~~~~p~ly~~LGiflpLI~tNCaVL 116 (190)
T TIGR01943 40 MGLAVTFVMTLASVISWLVYNFIL--DPLNLEFLRTIVFILVIAALVQFVEMVVRKTSPDLYRALGIFLPLITTNCAVL 116 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhhhhhHHHHHHHHH
Confidence 444444444444444433322222 22334444444444444444455677889999998888888888766555544
No 60
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=75.86 E-value=23 Score=35.27 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=57.9
Q ss_pred HHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhc
Q 016764 143 FLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLT 222 (383)
Q Consensus 143 l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~la 222 (383)
++++..|.-.|+.- .+.+||.++++-..|+.+.-.+ ..+. ..+..+..+..+-+.+-+-|.++-++ |...
T Consensus 89 lIFmGvGAmTDFgp---llanPktllLGaAAQ~GIF~t~--~~A~----~lgf~~~eAasIgIIGGADGPTaIy~-t~~L 158 (375)
T COG1883 89 LIFMGVGAMTDFGP---LLANPKTLLLGAAAQFGIFATV--FGAL----ALGFTPKEAASIGIIGGADGPTAIYL-TNKL 158 (375)
T ss_pred HHHhccchhcccch---hhcCcHHHHhhhHHHhchHHHH--HHHH----HhCCCHhhhhheeeeccCCCCceEEe-cccc
Confidence 34455666666654 4569999999999999875333 2222 34556667777766676654443332 2333
Q ss_pred CCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 016764 223 DPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 254 (383)
Q Consensus 223 gGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g 254 (383)
.-|. --++....-| ..+-|+.=|..+..+..
T Consensus 159 AP~L-l~~iAvAAYSYMALVPiIQPpimkaLTt 190 (375)
T COG1883 159 APEL-LGAIAVAAYSYMALVPIIQPPIMKALTT 190 (375)
T ss_pred CHHH-HHHHHHHHHHHHHHhhhcccHHHHHhcC
Confidence 3333 1222222222 23556677888888754
No 61
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=72.50 E-value=1.4e+02 Score=31.88 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHH
Q 016764 140 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT 219 (383)
Q Consensus 140 ~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T 219 (383)
.+.+.+...|+++|+..+.+ ++..++...+..++..++..++.+..+ ..+....+..|+.+ ++.|-.+-+..
T Consensus 281 f~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~~~~--g~~~~~a~~~gl~l---~~~Gef~lii~ 352 (558)
T PRK10669 281 FAVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLVRLF--GHSRRTALTIAASL---AQIGEFAFILA 352 (558)
T ss_pred HHHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChhhHHHHHHHH---hcccchHHHHH
Confidence 45555566899999987764 344444444455666777777666521 12334455556554 34444443322
Q ss_pred H--hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 220 F--LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 220 ~--lagGd~~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
. ...|-..+-......+.++++.+++|++....
T Consensus 353 ~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 353 GLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 22332212223334555677778888776553
No 62
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=70.93 E-value=1.1e+02 Score=32.98 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhc--hhHHHHHHHHHHHHHH-HHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHH
Q 016764 141 LGFLMFAVGVNSSEKDFIEAFKR--PAAIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY 217 (383)
Q Consensus 141 l~l~mf~~Gl~l~~~~l~~~~r~--p~~ll~~l~~~fvl~P-lla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v 217 (383)
+.+-++..|++--.+-+ +.+++ .+..+.+.++ .+.| ++++.+++- .+++++....|.+- +..-.+..-..
T Consensus 454 L~lFla~vG~~aG~~f~-~~l~~~G~~~~~~g~~~--~~~~~~~~~~~~~~---~~~~~~~~~~G~~a-G~~t~t~~l~~ 526 (562)
T TIGR03802 454 LALFIAVVGLSAGPQAV-TAIKEMGLTLFLLGIVV--TILPLIITMLIGKY---VLKYDPALLLGALA-GARTATPALGA 526 (562)
T ss_pred HHHHHHHHHHhhhHHHH-HHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHH---HhCCCHHHHHHHhh-ccCCCcHHHHH
Confidence 33334456776666544 45555 2333344433 3345 556777741 67999999998853 33322222222
Q ss_pred HHHhcCCCCchhHHHHH-HHHHHHHHHHHHHHH
Q 016764 218 ATFLTDPPLAPLSIVMT-SLSTATAVFVTPLLS 249 (383)
Q Consensus 218 ~T~lagGd~~~Lal~lt-~istlla~~~~Pl~l 249 (383)
.....+-|....+-+.+ .+++++=++..|+++
T Consensus 527 a~~~~~~~~~~~gYa~~Yp~~~i~~il~~~~iv 559 (562)
T TIGR03802 527 VLERAGSSVPALGYTITYALGNVLLTLLGPLIV 559 (562)
T ss_pred HHHhcCCCCcccchHhHHHHHHHHHHHHHHHHH
Confidence 33444433211222222 345555555555544
No 63
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=70.53 E-value=37 Score=33.94 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHH--h-hhhhhhhhcccChHHHHHHHHHHHHHhhhh--hhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016764 270 QIVVVPIAAGLLLNRF--F-PRICNAIRPFLPPLSVLVTACCVGAPLAIN--IESVMSPFGLTILLLIITFHLSAFVAGY 344 (383)
Q Consensus 270 l~VllPl~lG~llr~~--~-p~~~~~i~~~l~~ls~l~llliv~~v~a~~--~~~i~~~~~~~i~l~~~ll~~~gf~lG~ 344 (383)
+-+++=+++|.+++|+ + ++..+.+.++.-.+..-++++. .++.+ .+.+.+ .+.+.+...+...+++++++
T Consensus 7 ~~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~---~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 81 (385)
T PF03547_consen 7 LPIFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFS---SIANTDTLEDLLS--LWFIPVFAFIIFILGLLLGF 81 (385)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHhccchhhhhh--hHHHHHHHHHHHHHHHHHHH
Confidence 4566667789999876 2 2333444444433333333322 22221 111222 12344555667788888888
Q ss_pred HHHHHhhhccccccccceeeEeeeccCChH
Q 016764 345 VVTGLAFAEAHDVKALQRTLSYETGVMFLY 374 (383)
Q Consensus 345 llar~l~~~~~~~~~~~~tla~~tG~rN~~ 374 (383)
...|. ++.+. +++......++..|.+
T Consensus 82 ~~~~~-~~~~~---~~~~~~~~~~~~~N~~ 107 (385)
T PF03547_consen 82 LLSRL-FRLPK---EWRGVFVLAASFGNTG 107 (385)
T ss_pred HHHHh-cCCCc---ccceEEEecccCCcch
Confidence 88774 34442 5677788888888874
No 64
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=69.15 E-value=19 Score=36.27 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764 137 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187 (383)
Q Consensus 137 i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~ 187 (383)
++..+.+..|..|.+++.+++.+. .+..++++. .+.++.+.+.+.+.+
T Consensus 201 i~~lLp~~~~~lG~~l~lq~i~~~--G~~GilL~~-~~~~~t~~~~~~~~R 248 (326)
T PRK05274 201 VPVLIPFFAFALGNGIDLGTIITA--GLSGILLGV-AVVAVTGIPLYLADR 248 (326)
T ss_pred cEEEHHHHHHHHhcceeHhHHHhc--CCcchhhhh-hHhhccchhhHhHhh
Confidence 334556666667777777666543 222323322 233344555555555
No 65
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=67.19 E-value=1.1e+02 Score=28.69 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhC--------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCh
Q 016764 228 PLSIVMTSLSTATAVFVTPLLSLLLIG--------KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 299 (383)
Q Consensus 228 ~Lal~lt~istlla~~~~Pl~l~ll~g--------~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ 299 (383)
...++.+.+-++.+++.-++.-.++.. .+.++++..+..-++.+-.+=...-+++|++.|+.-+.+..+++.
T Consensus 40 gmGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpL 119 (202)
T PRK02830 40 GLGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLPL 119 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 345555666666666665554444322 124445545544444444445567888999999998888888887
Q ss_pred HHHHHHHH
Q 016764 300 LSVLVTAC 307 (383)
Q Consensus 300 ls~l~lll 307 (383)
+..=|.++
T Consensus 120 I~~NCaVL 127 (202)
T PRK02830 120 ITVNCAIF 127 (202)
T ss_pred HHHHHHHH
Confidence 76555544
No 66
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=66.56 E-value=17 Score=33.05 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=34.6
Q ss_pred cChHHHHHHHHHHHHHhhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016764 297 LPPLSVLVTACCVGAPLAINIE-SVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEA 354 (383)
Q Consensus 297 l~~ls~l~llliv~~v~a~~~~-~i~~~~~~~i~l~~~ll~~~gf~lG~llar~l~~~~ 354 (383)
++.+.....+..++....++-- .+.++ ++...+..++...++..+++.++|++++.+
T Consensus 55 l~~~GL~lFl~~VGl~aG~~F~~~l~~~-G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 112 (169)
T PF06826_consen 55 LRQLGLALFLAAVGLSAGPGFFSSLKRG-GLKLLLLGVIITLVPLLIALVIGRYLFKLN 112 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3334444444444443333322 23343 667778888899999999999998665654
No 67
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=65.02 E-value=1.2e+02 Score=34.50 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=59.1
Q ss_pred HHHHHHHHhccCcch--hhhhh---hhH-HHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 115 VLGSTMLALVFPPSF--TWFTA---RYY-APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI 188 (383)
Q Consensus 115 vl~~~~lGl~~P~~~--~~~~~---~~i-~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l 188 (383)
++++.++|+.+|+.- ..+.+ ... ...+.+-+...|+++++..+... ..+...+...+..++..-+.+++.++
T Consensus 296 ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~-~~~~~~~~liv~a~~gK~~g~~l~a~- 373 (832)
T PLN03159 296 VFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGP-ATWGLLVLVIIMASAGKIMGTIIIAF- 373 (832)
T ss_pred HHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 455667888888631 11111 222 23455556668999999766421 01112122222233344344555554
Q ss_pred hhhccCCCh--hHHHHHHHHhcCCchhHHHH-H-HHhcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 189 SVSVFGLPT--PIGAGIMLVSCVSGAQLSNY-A-TFLTDPPLA-PLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 189 ~~~~~~l~~--~~a~GlvL~a~~P~~~~s~v-~-T~lagGd~~-~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
.++.+. .+.+|+++ .+-| ...-+ . .....|-.. ..-..++....+.+.++.|++..+|
T Consensus 374 ---~~g~~~~eal~lG~lm--~~kG-~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 374 ---FYTMPFREGITLGFLM--NTKG-LVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred ---HhCCCHHHHHHHHHHH--hccc-HHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 345544 44445443 2223 33322 1 122223110 1222223333456777778776655
No 68
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=64.05 E-value=18 Score=36.51 Aligned_cols=100 Identities=8% Similarity=0.007 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHh-hhhhhhhhcccCh----HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016764 274 VPIAAGLLLNRFF-PRICNAIRPFLPP----LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTG 348 (383)
Q Consensus 274 lPl~lG~llr~~~-p~~~~~i~~~l~~----ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~llar 348 (383)
+-+++|++++... ++..++.++-... +-.+.+++ ..+..+-+.+.+ .++..++..+......+.+++++++
T Consensus 36 ~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL---lG~~l~~~~i~~-~G~~~l~~~~~~v~~~~~~~~~~g~ 111 (335)
T TIGR00698 36 LAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL---YGFRLTFPYIAD-VGPNEIVADTLILTSTFFLTVFLGS 111 (335)
T ss_pred HHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH---HCccccHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888888743 3333333332222 22222221 112223334433 3444445555566677788889985
Q ss_pred HhhhccccccccceeeEeeeccCChHHhhhhh
Q 016764 349 LAFAEAHDVKALQRTLSYETGVMFLYNKILYS 380 (383)
Q Consensus 349 ~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA 380 (383)
++++.++ +.+.-++-.++..=.+-+++.+
T Consensus 112 k~l~l~~---~~~~Lia~GtsICGaSAi~A~a 140 (335)
T TIGR00698 112 SRLKLDK---QMSILLGAGSSICGAAAVAAIE 140 (335)
T ss_pred HHhCCCh---hHHHHHHcchhHHHHHHHHHhc
Confidence 4456553 4444455555555444444433
No 69
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=63.69 E-value=14 Score=37.87 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=90.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhccCcc---------hhhhhhh---hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHH
Q 016764 102 NILKQSNSFLPHVVLGSTMLALVFPPS---------FTWFTAR---YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFA 169 (383)
Q Consensus 102 ~~l~~l~~~l~~~vl~~~~lGl~~P~~---------~~~~~~~---~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~ 169 (383)
+.++.+=+--.+..+.+.++|..-|-- ....++. .-..++..|+...|-++-. +.++.-.+.+.++-
T Consensus 240 ~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~-g~~ss~~~~~~iig 318 (408)
T KOG2722|consen 240 VILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQ-GLRSSALKTSVIIG 318 (408)
T ss_pred hhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhcccccc-CchhcccCceEEEE
Confidence 444444343445566667776654432 1111111 1123566777777776644 34454456666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc--cC-CChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Q 016764 170 GYVGQFVVKPILGYIFGTISVSV--FG-LPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTP 246 (383)
Q Consensus 170 ~l~~~fvl~Plla~~l~~l~~~~--~~-l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~P 246 (383)
..+..++++|+.+.++...+..+ .. .+|-+..-+++...+|++.....+|.+.|--. .-.......+-..+.+-.-
T Consensus 319 iii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e-~Ecs~il~W~y~va~l~lt 397 (408)
T KOG2722|consen 319 IIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAE-RECSVILFWTYAVASLSLT 397 (408)
T ss_pred EEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhH-HHHHHHHHHHHHHHHhhHH
Confidence 67788999999998887765432 22 45678888999999999998888888877544 3444555555555555444
Q ss_pred HHHHH
Q 016764 247 LLSLL 251 (383)
Q Consensus 247 l~l~l 251 (383)
+|..+
T Consensus 398 vw~~~ 402 (408)
T KOG2722|consen 398 VWSVF 402 (408)
T ss_pred HHHHH
Confidence 44433
No 70
>COG3329 Predicted permease [General function prediction only]
Probab=63.11 E-value=12 Score=37.46 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=39.5
Q ss_pred hhchHHHHHH--HhhhHHHHHHHHHHHHHhccCcchhhhhhhh----HHHHHHHHHHHhcCCCCHHHHHHHHhc
Q 016764 96 QEFSLVNILK--QSNSFLPHVVLGSTMLALVFPPSFTWFTARY----YAPALGFLMFAVGVNSSEKDFIEAFKR 163 (383)
Q Consensus 96 ~~~~~~~~l~--~l~~~l~~~vl~~~~lGl~~P~~~~~~~~~~----i~~~l~l~mf~~Gl~l~~~~l~~~~r~ 163 (383)
|+.+.++.++ +++.-+. .++++.++|++..+.+....+++ ..-.+.+.|+-||++- .+++++..+.
T Consensus 203 ~~v~~~ell~Esflnpal~-lllggl~iGlitGe~g~~vl~~F~~~lFqGvL~lflL~MGm~A-~rrl~elrk~ 274 (372)
T COG3329 203 NRVKIWELLQESFLNPALV-LLLGGLAIGLITGEQGESVLKPFFDPLFQGVLCLFLLDMGMTA-GRRLKELRKV 274 (372)
T ss_pred cchhhHHHHHHHHcCchHH-HHHHHHHHhheeccCchhhhhhhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHhc
Confidence 4456667666 4454333 57888999999866655443333 3335666677788764 3445554433
No 71
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=62.22 E-value=1.4e+02 Score=32.26 Aligned_cols=71 Identities=23% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchh
Q 016764 138 APALGFLMFAVGVNSSEKDFIEAFKR-PAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQ 213 (383)
Q Consensus 138 ~~~l~l~mf~~Gl~l~~~~l~~~~r~-p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~ 213 (383)
...+.+-+|+.|++.-++=++...|+ .+..+.+++... ..=++++++++ ++++++..+.|++-=+..-+..
T Consensus 61 ~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~-~~~~~~~~~~~----~~g~~~~~~~Gl~aGalT~tp~ 132 (562)
T TIGR03802 61 AVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAV-SGLITVYALAK----IFGLDKGTAAGLAAGGLTQSAV 132 (562)
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHH-HHHHHHHHHHH----HhCCCHHHHHHHHhchhhccHH
Confidence 45667777889999999877655444 455555444332 22345666665 7899999999998655544433
No 72
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=61.11 E-value=1.9e+02 Score=29.27 Aligned_cols=129 Identities=21% Similarity=0.297 Sum_probs=71.2
Q ss_pred HHHHHHHHhccCcchhhhh--hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016764 115 VLGSTMLALVFPPSFTWFT--ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSV 192 (383)
Q Consensus 115 vl~~~~lGl~~P~~~~~~~--~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~ 192 (383)
++.++..|=+-|....... ....-..+.++||..|+..+.||+.++. ..-+-+.+.|..+.-++++++.++
T Consensus 37 L~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk---~iAipgAl~qia~at~lg~gL~~~---- 109 (408)
T COG4651 37 LLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVK---AIAIPGALAQIALATLLGMGLSSL---- 109 (408)
T ss_pred HHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHH---HHhcchHHHHHHHHHHHHhHHHHH----
Confidence 4556666656665543221 2234457889999999999999998642 112344566888888889998873
Q ss_pred cCCChhHHHHHHHHhcCCchhHHHHH-HHhc-------CCCCchhH-HHHHHHHHHHHHHHHHHHHHHhh
Q 016764 193 FGLPTPIGAGIMLVSCVSGAQLSNYA-TFLT-------DPPLAPLS-IVMTSLSTATAVFVTPLLSLLLI 253 (383)
Q Consensus 193 ~~l~~~~a~GlvL~a~~P~~~~s~v~-T~la-------gGd~~~La-l~lt~istlla~~~~Pl~l~ll~ 253 (383)
.+.+ +..|+++--|...+...... +..- +|.. +.. +.+-=+-.++..+..|..-..+.
T Consensus 110 lgws--~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~i-AiGwLiveDl~mVl~Lvllpa~a~~~g 176 (408)
T COG4651 110 LGWS--FGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRI-AIGWLIVEDLAMVLALVLLPALAGVLG 176 (408)
T ss_pred cCCC--cccceeeeehhhhHHHHHHHHHHHHhccccccCceE-EEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence 3322 23444443344443333222 2222 3332 111 22233445566667787666663
No 73
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=60.33 E-value=2e+02 Score=29.32 Aligned_cols=188 Identities=17% Similarity=0.221 Sum_probs=93.6
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhh---hccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHH
Q 016764 156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISV---SVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIV 232 (383)
Q Consensus 156 ~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~---~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~ 232 (383)
++.|.++.-..+.++.+.-+.+.|.++..+..... +..+.||....+.++..=+-|-..+..+ + .|. +....
T Consensus 33 ~FeeG~~amG~l~l~m~GI~~laP~la~~l~~vi~Pl~~~~GaDPamfa~tiLA~DMGGY~LA~~l---a-~~~-~~~~f 107 (354)
T PF04346_consen 33 KFEEGIMAMGPLALSMAGIMALAPVLAAFLSPVIGPLFQAIGADPAMFAGTILANDMGGYQLAMEL---A-QDP-EAGIF 107 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhcCcCHHHHHHH---c-CCh-hhHHH
Confidence 44455544455666666666777777777665332 2457788888777764433333322211 1 122 12211
Q ss_pred H-HHHHHHHH---HHHHHHHHHHhh-------------------------CCccccChHHHHHHHHHHHHHHHHHHHHHH
Q 016764 233 M-TSLSTATA---VFVTPLLSLLLI-------------------------GKRLPVDVKGMVSSILQIVVVPIAAGLLLN 283 (383)
Q Consensus 233 l-t~istlla---~~~~Pl~l~ll~-------------------------g~~v~id~~~i~~~Lll~VllPl~lG~llr 283 (383)
. ..+++.++ .|++|+-+..+- |--..+|+..++.+++-++++-++++..++
T Consensus 108 sG~ilgsmlG~TIvFtIPVaLgii~k~D~~y~a~Gil~GiitIPiG~~vggl~~g~~~~~il~Nl~Pvii~~~lla~GL~ 187 (354)
T PF04346_consen 108 SGLILGSMLGATIVFTIPVALGIIEKEDHKYLAKGILAGIITIPIGCFVGGLIAGFDIGMILINLIPVIIFAILLAIGLW 187 (354)
T ss_pred HHHHHHHhhcccEEeehhhhhhhcChhhhHHHHHHHHHHHhhhCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22222222 234454443331 111246788888888888888888888888
Q ss_pred HHhhhhhh---hhhcccChHHHHHHHHHHHHHh-----hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 284 RFFPRICN---AIRPFLPPLSVLVTACCVGAPL-----AINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLA 350 (383)
Q Consensus 284 ~~~p~~~~---~i~~~l~~ls~l~llliv~~v~-----a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~llar~l 350 (383)
+.-.+..+ ...+....++.+.+++.+.-.+ -.+.+.+.+ +..++.-..++-.-+|-.-|++-|.+
T Consensus 188 ~~p~~mIkgF~~fGk~i~~~~~igL~~~~~e~~tG~~i~~g~~pi~e--~~~ivg~IaI~LaGAfPmv~~i~k~f 260 (354)
T PF04346_consen 188 FFPEKMIKGFNIFGKFIVILITIGLAAAIVEYLTGIKIIPGMAPISE--AIEIVGSIAIVLAGAFPMVYLITKVF 260 (354)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHH--HHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 77433332 2333344444444443332111 111111212 23444444455555666666666553
No 74
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=60.17 E-value=1.5e+02 Score=27.77 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh----CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHH
Q 016764 228 PLSIVMTSLSTATAVFVTPLLSLLLI----GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVL 303 (383)
Q Consensus 228 ~Lal~lt~istlla~~~~Pl~l~ll~----g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l 303 (383)
..+++.+.+-++.++..-++.-+++. .+.+.+++.++..-++.+-.+=-..-+++|++.|+..+.+..+++.+..=
T Consensus 41 gmGlAvtfVl~~s~~~~~~i~~~il~p~~l~~~~~i~~Lr~~~fIlvIA~~V~~ve~~l~a~~p~Ly~~LGiflpLI~tN 120 (199)
T PRK12456 41 GLGLTVTALLAIATPLNNLIYTYILRENALIDGVDLSFLDFITFIGVLAALVQILEMVLERFLPSLHHTLGAFLPLLTIH 120 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 34555555555555555555444332 12234444444444433333345567789999999888888888776555
Q ss_pred HHHH
Q 016764 304 VTAC 307 (383)
Q Consensus 304 ~lll 307 (383)
|.++
T Consensus 121 CaVL 124 (199)
T PRK12456 121 CAIF 124 (199)
T ss_pred HHHH
Confidence 5544
No 75
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=55.24 E-value=1.8e+02 Score=27.12 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHH
Q 016764 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 307 (383)
Q Consensus 229 Lal~lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~lll 307 (383)
.+++.+.+-++.++..-++.-++. ...+.++.++..-++.+-.+=-..-+++|++.|+..+.+..+++.+..=|.++
T Consensus 41 mGlav~fV~~~s~~~~~~i~~~il--~p~~l~~lr~~~fIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI~tNCaVL 117 (193)
T PRK05151 41 MGLATTFVLTLASICAWLVNTYIL--IPLDLIYLRTLAFILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVL 117 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 455555555555555555443332 12233444444444433334445667789999998888888887776555544
No 76
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=54.80 E-value=2.1e+02 Score=27.73 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-------CC---ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccC
Q 016764 229 LSIVMTSLSTATAVFVTPLLSLLLI-------GK---RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLP 298 (383)
Q Consensus 229 Lal~lt~istlla~~~~Pl~l~ll~-------g~---~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~ 298 (383)
+.++.+.+-++.+++.-++.-+++. +. .+..++.++..-++.+-.+=-++-+++|++.|+.-+.+..+++
T Consensus 48 MGlAvtfVl~~S~~i~~~l~~~Il~p~a~~~~~~~~~~~~l~~Lr~ivfIlvIA~~Vq~vem~L~a~~p~Ly~aLGifLP 127 (244)
T PRK01061 48 LGMSVALVLTVTGSINWFVHAFITGPGALTWLSPALANVNLSFLELIIFIVVIAAFTQILELLLEKVSRNLYLSLGIFLP 127 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence 4555555555555555555333321 21 1234444444444444444456778899999998888888887
Q ss_pred hHHHHHHHH
Q 016764 299 PLSVLVTAC 307 (383)
Q Consensus 299 ~ls~l~lll 307 (383)
.+..=|.++
T Consensus 128 LIttNCaVL 136 (244)
T PRK01061 128 LIAVNCAIL 136 (244)
T ss_pred HHHHHHHHH
Confidence 766555543
No 77
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=52.62 E-value=2.8e+02 Score=28.52 Aligned_cols=192 Identities=17% Similarity=0.271 Sum_probs=90.7
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhh---hccCCChhHHHHHHHHhcCCchhHHHHHH-------------
Q 016764 156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISV---SVFGLPTPIGAGIMLVSCVSGAQLSNYAT------------- 219 (383)
Q Consensus 156 ~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~---~~~~l~~~~a~GlvL~a~~P~~~~s~v~T------------- 219 (383)
++.|.+..=..+.++.+.-+.+.|.++..+..... +.++.||....+-++..=+-|-..+.-++
T Consensus 34 ~FeeGi~aMG~lalsm~GI~~laP~ls~~l~~ii~Pi~~~lgaDpsmfa~siLA~DMGGY~LA~~la~~~~~~~fsG~il 113 (372)
T PRK15086 34 QFEEGIMAMGPLALAMVGIMALAPVLAHVLGPVIIPIYEALGADPSMFATTLLAVDMGGYQLAKELAGDPEAWLFSGLIL 113 (372)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHhcCcCHHHHHHHhcChhhHHHHHHHH
Confidence 34444444445566666666667777766654322 23566777776666544333332222111
Q ss_pred -HhcCCCC---chhHHH--------HHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016764 220 -FLTDPPL---APLSIV--------MTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFP 287 (383)
Q Consensus 220 -~lagGd~---~~Lal~--------lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p 287 (383)
.+.|-.. .+.++. .-....+.+++++|+-... .|-...+|+..++.+++-++++-.+++..++++-.
T Consensus 114 gsmlG~TIvFtIPVaLgii~k~D~~yla~Gil~GiitIPiG~~v-ggl~~g~~~~~il~NL~Piii~~illa~GL~~~p~ 192 (372)
T PRK15086 114 GSMMGATIVFTIPVALGIIEKEDRKYLALGVLAGIITIPIGCLI-GGLVAGFDFALILRNLIPVIIFAILLALGLKFIPE 192 (372)
T ss_pred HHhccceEEeeHHhhHhhcchhhHHHHHHHHHHHhHhhcHHHHH-HHHHHhCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1111100 000000 1122334455555543321 11123578888899998888888888888886643
Q ss_pred hhhh---hhhcccChHHHHHHHHHHHHHh-----hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016764 288 RICN---AIRPFLPPLSVLVTACCVGAPL-----AINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGL 349 (383)
Q Consensus 288 ~~~~---~i~~~l~~ls~l~llliv~~v~-----a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~llar~ 349 (383)
+..+ ...+....+..+++++.+.-.+ -.+.+.+.++ +..++.-..++-.-+|-.-|++-|.
T Consensus 193 ~mIkgF~~FGk~i~~~~~igL~~~~v~~~tG~~~i~g~~pi~~e-ai~ivg~Iai~LaGAfpmv~~i~k~ 261 (372)
T PRK15086 193 KMIKGFLIFGKFIVALITIGLAAAIVQSLTGWKLIPGFDPIKFE-AIEIVGSIAIVLAGAFPMVYLITKV 261 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcchhHHH-HHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3322 2333334444444443332111 0111112021 3344444444445566666666654
No 78
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=49.99 E-value=2.2e+02 Score=26.67 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--------CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChH
Q 016764 229 LSIVMTSLSTATAVFVTPLLSLLLI--------GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 300 (383)
Q Consensus 229 Lal~lt~istlla~~~~Pl~l~ll~--------g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~l 300 (383)
..++.+.+-++.+++.-++.=++.. .+++++.+.++..-++.+-.+=...-+++|++.|+..+.+..+++.+
T Consensus 40 mGlAvtfV~~~s~~~~~~i~~~il~p~~~~~~~~~~~~l~~Lr~~~fIlvIA~~V~~vem~l~a~~p~ly~~LGiflpLI 119 (200)
T TIGR01940 40 LGVAVTFVLTITVPINNLIYTYILKDGALSWGGPAEVDLSFLELITFIGVIAALVQILEMVLERFSPSLYNALGIFLPLI 119 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 4555555555555555554433331 11233334344444433333444567889999999888888888776
Q ss_pred HHHHHHH
Q 016764 301 SVLVTAC 307 (383)
Q Consensus 301 s~l~lll 307 (383)
..=|.++
T Consensus 120 ~tNCaVL 126 (200)
T TIGR01940 120 TVNCAIF 126 (200)
T ss_pred HHHHHHH
Confidence 6555544
No 79
>PRK04972 putative transporter; Provisional
Probab=48.57 E-value=3.8e+02 Score=28.93 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHH
Q 016764 138 APALGFLMFAVGVNSSEKDFIEAFKR-PAAIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS 215 (383)
Q Consensus 138 ~~~l~l~mf~~Gl~l~~~~l~~~~r~-p~~ll~~l~~~fvl~P-lla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s 215 (383)
...+.+-+|..|++.-++=+....++ .+..+.+.+. .+.| ++++.+++ .+++++..+.|++-=+..-++...
T Consensus 63 ~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~G~~aGa~T~tp~l~ 136 (558)
T PRK04972 63 NLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVM--VGSALVIALGLGK----LFGWDIGLTAGMLAGSMTSTPVLV 136 (558)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHH----HhCCCHHHHHHHhhccccCcHHHH
Confidence 45666667778888887666544333 3333433332 3333 44555555 689999999998854444443333
No 80
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=48.15 E-value=44 Score=25.51 Aligned_cols=36 Identities=22% Similarity=0.524 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016764 260 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRP 295 (383)
Q Consensus 260 d~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~ 295 (383)
+..++++-+++..++=+-+|.+.+++.|++-+.+..
T Consensus 2 ~i~DiiQii~l~AlI~~pLGyl~~~~~~r~~~~lr~ 37 (62)
T PF11120_consen 2 NISDIIQIIILCALIFFPLGYLARRWLPRIRRTLRR 37 (62)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 345666666667777777999999999987665443
No 81
>PRK03818 putative transporter; Validated
Probab=47.02 E-value=4e+02 Score=28.73 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHH-hc--hhHHHHHHHHHHHHHH-HHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHH
Q 016764 141 LGFLMFAVGVNSSEKDFIEAF-KR--PAAIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN 216 (383)
Q Consensus 141 l~l~mf~~Gl~l~~~~l~~~~-r~--p~~ll~~l~~~fvl~P-lla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~ 216 (383)
+.+-+...|++--.+-+ +.+ +. ++..+.+.+. .+.| ++++.+++. .+++++....|.+ +++.-.+..-+
T Consensus 439 L~lFla~vGl~aG~~f~-~~~~~~~G~~~~~~g~~v--~~~~~~~~~~~~~~---~~~~~~~~~~G~~-aG~~t~tp~l~ 511 (552)
T PRK03818 439 IVLFLAVVGLKSGGDFV-DTLVNGEGLSWIGYGFLI--TAVPLLIVGILARM---LAKMNYLTLCGML-AGSMTDPPALA 511 (552)
T ss_pred HHHHHHHHHhhhhHHHH-HHHhccchHHHHHHHHHH--HHHHHHHHHHHHHH---HHcCCHHHHHHHH-hccCCCcHHHH
Confidence 33334446666655444 454 43 2333333333 3334 446666542 6789999888885 34333332223
Q ss_pred HHHHh-cCCCCchhHHHHH-HHHHHHHHHHHHHHHHHh
Q 016764 217 YATFL-TDPPLAPLSIVMT-SLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 217 v~T~l-agGd~~~Lal~lt-~istlla~~~~Pl~l~ll 252 (383)
..+.. .+.|..+.+-+.+ .++++.-++..++++.++
T Consensus 512 ~a~~~~~~~~~~~~gYa~~Yp~~~~~~i~~~~~~~~~~ 549 (552)
T PRK03818 512 FANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLF 549 (552)
T ss_pred HHhcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443 5555312222222 344555555555544433
No 82
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=45.38 E-value=2.5e+02 Score=25.94 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHH
Q 016764 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 307 (383)
Q Consensus 229 Lal~lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~lll 307 (383)
.+++.+.+.++.+++.-++.=.++.. .+..++...++.+-.+=..+.+++|++.|+..+.+..+++.+..=|+++
T Consensus 41 mGlav~~V~~~s~~~~~~l~~~il~p----~~~lr~~~~ilviA~~v~~v~~~l~~~~p~l~~~LgiylpLi~~Nc~VL 115 (190)
T PF02508_consen 41 MGLAVTFVLTLSSVLISLLRNFILAP----PSYLRIIVFILVIASLVQLVEMVLRAYFPSLYKALGIYLPLITVNCAVL 115 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444444443333221 2333333333333334445778889999998888888877665544443
No 83
>COG0679 Predicted permeases [General function prediction only]
Probab=42.41 E-value=3.4e+02 Score=26.65 Aligned_cols=171 Identities=17% Similarity=0.165 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHH
Q 016764 136 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS 215 (383)
Q Consensus 136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s 215 (383)
.+..++..+.|..-.+-+.+.. .+.+.+...++...+.. +..+.+++. .++.+.+...++.+.+.-|-...-
T Consensus 40 v~~~~lP~LlF~~i~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~N~g~l 111 (311)
T COG0679 40 VVYVALPALLFNSIATADLSGL----ADLGLIVASLVATLLAF-FLLALIGRF---LFKLDKRETVIFALASAFPNIGFL 111 (311)
T ss_pred HHHHHhHHHHHHHHHhCCcchh----hhHHHHHHHHHHHHHHH-HHHHHHHHH---HhccchhhHHHHHHHHHhcccchh
Confidence 3455777777776666665555 23344444444444332 334444442 456677767777777777754433
Q ss_pred -HHHHHhcCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhCCccccChHHHHHHHHH-HHHHHHHHHHHHHHH---hhhh
Q 016764 216 -NYATFLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQ-IVVVPIAAGLLLNRF---FPRI 289 (383)
Q Consensus 216 -~v~T~lagGd~~~Lal~lt~is-tlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll-~VllPl~lG~llr~~---~p~~ 289 (383)
.-.+.-.=||. .++....... ........-.+...-.++.-+...+...++++. =.++-.++|.+++.. .|+.
T Consensus 112 g~pi~~~~~G~~-gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~ 190 (311)
T COG0679 112 GLPVALSLFGEK-GLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAP 190 (311)
T ss_pred hHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHH
Confidence 22344444444 3433332221 111122222222222222222233334443321 223334456666642 3555
Q ss_pred hhhhhcccChHHHHHHHHHHHHHhhh
Q 016764 290 CNAIRPFLPPLSVLVTACCVGAPLAI 315 (383)
Q Consensus 290 ~~~i~~~l~~ls~l~llliv~~v~a~ 315 (383)
.++-.+.+.....-+.+++++..++.
T Consensus 191 ~~~~~~~l~~a~~pl~li~lG~~L~~ 216 (311)
T COG0679 191 LDTAVDLLASAASPLALIALGLSLAF 216 (311)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhcch
Confidence 44444445555555556566665544
No 84
>COG2855 Predicted membrane protein [Function unknown]
Probab=41.85 E-value=64 Score=32.64 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccChHHHHHH-HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016764 275 PIAAGLLLNRFFPRICNAIRPFLPPLSVLVT-ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAE 353 (383)
Q Consensus 275 Pl~lG~llr~~~p~~~~~i~~~l~~ls~l~l-lliv~~v~a~~~~~i~~~~~~~i~l~~~ll~~~gf~lG~llar~l~~~ 353 (383)
-+++|++++. .++..++.++-...-++..+ +-++...+..+.+.+.+ .+...+....+.....+.++|+++|. ++.
T Consensus 43 AIllGi~l~~-l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~-~G~~~v~~~~~~l~~t~~~~~~lg~~-lgl 119 (334)
T COG2855 43 AILLGILLGI-LPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIAD-VGGSGVLIIAITLSSTFLFAYFLGKL-LGL 119 (334)
T ss_pred HHHHHHHHhc-cccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHH-cCccHHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence 3447888873 33333333332222222222 11222223345555544 35455556666777889999999985 455
Q ss_pred c
Q 016764 354 A 354 (383)
Q Consensus 354 ~ 354 (383)
|
T Consensus 120 d 120 (334)
T COG2855 120 D 120 (334)
T ss_pred C
Confidence 4
No 85
>PRK09903 putative transporter YfdV; Provisional
Probab=39.94 E-value=3.7e+02 Score=26.30 Aligned_cols=199 Identities=14% Similarity=0.048 Sum_probs=85.9
Q ss_pred HhhhHHHHHHHHHHHHHhccCcc-------hhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHH
Q 016764 106 QSNSFLPHVVLGSTMLALVFPPS-------FTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVK 178 (383)
Q Consensus 106 ~l~~~l~~~vl~~~~lGl~~P~~-------~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~ 178 (383)
+++..+|+. ..+.+|+..-.. .+.+.+-....++..++|....+.+.++..+ +........+ .+++.
T Consensus 5 ~~~~ilpif--~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~---~~~~~~~~~~-~~~~~ 78 (314)
T PRK09903 5 FIGDLLPII--VIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFA---DTRLTLVSLV-VIVGC 78 (314)
T ss_pred HHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHh---hhhHHHHHHH-HHHHH
Confidence 456666653 334445544221 2222222345577777777666666655543 2333333333 22233
Q ss_pred HHHHHHHHHhhhhccCCChhHHHHHHHHhcCCc-hhHH-HHHHHhcCCCCchh-HHHHHHHHHHHHHHHHHHHHHHhhCC
Q 016764 179 PILGYIFGTISVSVFGLPTPIGAGIMLVSCVSG-AQLS-NYATFLTDPPLAPL-SIVMTSLSTATAVFVTPLLSLLLIGK 255 (383)
Q Consensus 179 Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~-~~~s-~v~T~lagGd~~~L-al~lt~istlla~~~~Pl~l~ll~g~ 255 (383)
-++++.+++. .++.+..-.....+....+- +-.. ++.....|.+ .. ++...........+..|...+.+...
T Consensus 79 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~--~~~~~~~a~~~~~~~~~~~~~g~~~~~~~ 153 (314)
T PRK09903 79 FFFSWFGCYK---FFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDS--VSTGLVVAIISIIVNAITIPIGLYLLNPS 153 (314)
T ss_pred HHHHHHHHHH---HhcCCcchhhHhhhhhcCCCcccccHHHHHHHcCch--hhhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3455555432 23444322222233333332 2222 3444455443 22 23222233334555666666655311
Q ss_pred ----ccccChHHHHHHH-HHHHHHHHHHHHHHHHH---hhhhhhhhhcccChHHHHHHHHHHHHHhhh
Q 016764 256 ----RLPVDVKGMVSSI-LQIVVVPIAAGLLLNRF---FPRICNAIRPFLPPLSVLVTACCVGAPLAI 315 (383)
Q Consensus 256 ----~v~id~~~i~~~L-ll~VllPl~lG~llr~~---~p~~~~~i~~~l~~ls~l~llliv~~v~a~ 315 (383)
+..-...+..+++ ---.++..++|++++-. .|++.++.-+.+.....-+.++.++..++.
T Consensus 154 ~~~~~~~~~~~~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~ 221 (314)
T PRK09903 154 SGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAA 221 (314)
T ss_pred cccccccchHHHHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1110111222221 12455566667766643 366554444444444444445555555543
No 86
>PRK03818 putative transporter; Validated
Probab=37.43 E-value=5.6e+02 Score=27.64 Aligned_cols=66 Identities=17% Similarity=0.327 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHhc--hhHHHHHHHHHHHHHH-HHHHHHHHhhhhccCCChhHHHHHHHHhcCCc
Q 016764 139 PALGFLMFAVGVNSSEKDFIEAFKR--PAAIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSG 211 (383)
Q Consensus 139 ~~l~l~mf~~Gl~l~~~~l~~~~r~--p~~ll~~l~~~fvl~P-lla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~ 211 (383)
..+.+-++..|++.-++-+. .+|+ .+..+.+.+. .+.| ++++++.+ .+++++..+.|++-=+..-+
T Consensus 65 ~gl~lFv~~vGl~~Gp~f~~-~l~~~G~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~G~~aGa~T~t 133 (552)
T PRK03818 65 FGLILFVYTIGIQVGPGFFS-SLRKSGLRLNLFAVLI--VILGGLVTAILHK----LFGIPLPVMLGIFSGAVTNT 133 (552)
T ss_pred HHHHHHHHHHhhcccHHHHH-HHHHhhHHHHHHHHHH--HHHHHHHHHHHHH----HhCCCHHHHHHHhhcccccc
Confidence 45666667788888876664 5554 3444444333 2333 33555554 68999998888875444333
No 87
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=36.31 E-value=5.2e+02 Score=26.98 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchh
Q 016764 110 FLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPA 165 (383)
Q Consensus 110 ~l~~~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~ 165 (383)
.+|+.++++...|+.-|.-..... ..+++.+-.|... +++++++.+.+++--
T Consensus 221 ~~pviilggI~~Gi~TpTEAaava---~~yal~v~~~iyr-~l~~~~l~~~l~~t~ 272 (425)
T PRK15060 221 FLPVIIIGGFRSGLFTPTEAGAVA---AFYALFVAVVIYR-EMTFSTLYHVLINAA 272 (425)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHH---HHHHHHHHHHHHc-CcCHHHHHHHHHHHH
Confidence 345555555566665555433222 2233333333333 889999999887643
No 88
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=35.30 E-value=4.4e+02 Score=25.82 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=69.4
Q ss_pred HHHHHHHHHH--HHHHHHHHHhhhhccCCChhHHHHHHHHhcCCch--------------hHHHHHHHhcCCCCchhHHH
Q 016764 169 AGYVGQFVVK--PILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA--------------QLSNYATFLTDPPLAPLSIV 232 (383)
Q Consensus 169 ~~l~~~fvl~--Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~--------------~~s~v~T~lagGd~~~Lal~ 232 (383)
.++..-+... |...|.+-.. +.++|.|+-.+-.+=||.+-. .+..+++.+..=| +.-..
T Consensus 144 ~glil~~~~~~~pf~ifl~~~f---f~~iP~eleEAA~iDGas~~~if~kIvlPl~~P~laa~~I~~fi~~WN--~fl~p 218 (281)
T COG0395 144 WGLILPYLAFGLPFAIFLLRQF---FRTIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGAWN--EFLWP 218 (281)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH---HHhCCHHHHHHHHHcCCChhHHHHHHHHHcchHHHHHHHHHHHHHHHH--HHHHH
Confidence 3444444444 8888888764 346888888888888877533 3333344443333 24444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 233 MTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF 286 (383)
Q Consensus 233 lt~istlla~~~~Pl~l~ll~g~~v~id~~~i~~~Lll~VllPl~lG~llr~~~ 286 (383)
++..++ -...++|+.+..+.+++...|+..++....+.++-++++-.+.||++
T Consensus 219 li~~~~-~~~~tl~v~l~~~~~~~~~~~w~~~~A~~vi~~lP~li~f~~~Qr~~ 271 (281)
T COG0395 219 LILLSS-PNLLTLPVGLNSFGGSEGGTDWGLIMAAAVLAILPVLIVFLFFQRYF 271 (281)
T ss_pred HHHhCC-CccccHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 45566777777776665667887776666556666667777777764
No 89
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=34.55 E-value=5.5e+02 Score=26.67 Aligned_cols=144 Identities=13% Similarity=0.202 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcC-Cchh
Q 016764 136 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI-FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCV-SGAQ 213 (383)
Q Consensus 136 ~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~l-l~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~-P~~~ 213 (383)
.....+..+.|.-|.+++.++++++.+.-..+ ..+.+...+.. ++..-. +++ +-+++.++.+-++. |+.+
T Consensus 62 ~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~---g~~~~~----l~~-~i~~~~a~l~gAilspTDP 133 (429)
T COG0025 62 FLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGI---GLLAHW----LLP-GIPLAAAFLLGAILSPTDP 133 (429)
T ss_pred HHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHH----HhC-ChhHHHHHHHhHHhcCCCc
Confidence 45678999999999999999998865332211 11111222221 222221 223 44556666664443 5444
Q ss_pred HHHH-HHHhcCCCCchhHHHHH---HHHHHHHHHHHHHHHHHhhCCc-cc--cChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 214 LSNY-ATFLTDPPLAPLSIVMT---SLSTATAVFVTPLLSLLLIGKR-LP--VDVKGMVSSILQIVVVPIAAGLLLNRFF 286 (383)
Q Consensus 214 ~s~v-~T~lagGd~~~Lal~lt---~istlla~~~~Pl~l~ll~g~~-v~--id~~~i~~~Lll~VllPl~lG~llr~~~ 286 (383)
.+.. ..+..+=+. .+...+. .++--.+.+..=+.+....++. .+ -.....+.....-+.+=+++|.+.++..
T Consensus 134 v~v~~i~~~~~vp~-ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~ 212 (429)
T COG0025 134 VAVSPIFKRVRVPK-RIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLL 212 (429)
T ss_pred hhhHHHHhcCCCCH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 233333332 3333332 3344455555444455554322 11 1122233333344445555555555554
Q ss_pred hh
Q 016764 287 PR 288 (383)
Q Consensus 287 p~ 288 (383)
.+
T Consensus 213 ~~ 214 (429)
T COG0025 213 RR 214 (429)
T ss_pred HH
Confidence 43
No 90
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=33.57 E-value=3.5e+02 Score=24.13 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHhchh-HHHHHHHHHHHHHH-HHHHHHHHhhhhccCCChhHHHHHH
Q 016764 139 PALGFLMFAVGVNSSEKDFIEAFKRPA-AIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIM 204 (383)
Q Consensus 139 ~~l~l~mf~~Gl~l~~~~l~~~~r~p~-~ll~~l~~~fvl~P-lla~~l~~l~~~~~~l~~~~a~Glv 204 (383)
..+.+-++..|++--.+-+ +.+|+.. ........-..+.| ++.+.+++ ..+++++....|.+
T Consensus 58 ~GL~lFl~~vGl~aG~~f~-~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~---~~~~~~~~~~~G~~ 121 (154)
T TIGR01625 58 FGLMLFLYGVGLSAGPGFF-SSLKDGGGLLRINGGALITVVPTLLVAVALI---KLLRINYALTAGML 121 (154)
T ss_pred HHHHHHHHHHHHHhhHHHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHH
Confidence 4555556667777776555 4555532 22222222222233 33444443 26799999999885
No 91
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=31.02 E-value=5.7e+02 Score=25.86 Aligned_cols=203 Identities=17% Similarity=0.220 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHhcCC----CCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHH-HhcCC
Q 016764 136 YYAPALGFLMFAVGVN----SSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIML-VSCVS 210 (383)
Q Consensus 136 ~i~~~l~l~mf~~Gl~----l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL-~a~~P 210 (383)
.....-..+|+..|++ +.-..+.+.. ...+.+++. =+++|+.+|.+.+- +.+++..-+.++.- .+.+.
T Consensus 25 i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~---~~~~~~~~l-g~liPl~~~~iLr~---~~~l~~~daaAiAAhYGSVS 97 (327)
T PF05982_consen 25 IYKFLSIYLLLAIGLKGGVELAHSGLTALL---LPLLAAVLL-GILIPLIAFPILRR---LGKLDRADAAAIAAHYGSVS 97 (327)
T ss_pred HHHHHHHHHHHHHhcccHHHHHcCCHHHHH---HHHHHHHHH-HHHHHHHHHHHHHH---ccCCChhhHHHHHHHcCchH
Confidence 3344444555665554 3333333311 222333333 35679999988762 34566544444433 45566
Q ss_pred chhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH-----HH-HhhCCc-----------------cccChHHHHHH
Q 016764 211 GAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLL-----SL-LLIGKR-----------------LPVDVKGMVSS 267 (383)
Q Consensus 211 ~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~-----l~-ll~g~~-----------------v~id~~~i~~~ 267 (383)
..+.+...+.+..-+. +..--++..-.+ .-.|.+ +. +..+++ -+.+.+++...
T Consensus 98 avTF~~a~~~L~~~gi-~yeg~m~a~~al---ME~PAIival~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~E 173 (327)
T PF05982_consen 98 AVTFAAALAFLESQGI-SYEGYMVALLAL---MESPAIIVALLLARLFSRKQAAGATASSTRVGAGSGHEGISWGELLHE 173 (327)
T ss_pred HHHHHHHHHHHHHCCC-CccccHHHHHHH---HhhhHHHHHHHHHHHHhccccccccCCccccccccccccccHHHHHHH
Confidence 6555555555554444 444444433222 223322 21 111111 13556777765
Q ss_pred HH-----HHHHHHHHHHHHHHHHhhhhhhhhhcccChH--HHHHHHHHH-HHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 016764 268 IL-----QIVVVPIAAGLLLNRFFPRICNAIRPFLPPL--SVLVTACCV-GAPLAINIESVMSPFGLTILLLIITFHLSA 339 (383)
Q Consensus 268 Ll-----l~VllPl~lG~llr~~~p~~~~~i~~~l~~l--s~l~llliv-~~v~a~~~~~i~~~~~~~i~l~~~ll~~~g 339 (383)
.+ ..++-=+++|.+.+ |+-.+.++|+...+ ..+++.+.- +...+.+-+.+.. .++..+...+++++++
T Consensus 174 ~l~~~sv~LLlGgliIG~~~g---~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~-~g~~li~Fgi~~Pli~ 249 (327)
T PF05982_consen 174 SLTNKSVVLLLGGLIIGFLAG---PEGVESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRK-VGWFLIAFGILMPLIN 249 (327)
T ss_pred HHcCchHHHHHHHHHHhheeC---ccchhhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHh-hhHHHHHHHHHHHHHH
Confidence 43 34444445555443 33345667764322 334444333 4444444455544 3666778888999999
Q ss_pred HHHHHHHHHHhhhcc
Q 016764 340 FVAGYVVTGLAFAEA 354 (383)
Q Consensus 340 f~lG~llar~l~~~~ 354 (383)
-.+|..+++.+ +.+
T Consensus 250 a~ig~~lg~~~-gls 263 (327)
T PF05982_consen 250 ALIGIGLGWLL-GLS 263 (327)
T ss_pred HHHHHHHHHHh-CCC
Confidence 99999888653 543
No 92
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=30.42 E-value=1.7e+02 Score=25.58 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=44.2
Q ss_pred HHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhc-----hhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 115 VLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKR-----PAAIFAGYVGQFVVKPILGYIFGTI 188 (383)
Q Consensus 115 vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~-----p~~ll~~l~~~fvl~Plla~~l~~l 188 (383)
+..++++|-.+-...+.+.+..+.|.+.+ ...| .+++++.-.++. -....+..++||++.-...|.+.+.
T Consensus 19 LAVgVIIGaAFg~IV~SlV~diImPlIg~--~~gg--~dfs~l~~~l~~~~~~i~yG~Fi~~vinFlIiAf~iFl~Vk~ 93 (130)
T COG1970 19 LAVGVIIGAAFGKIVTSLVNDIIMPLIGL--LVGG--LDFSNLFITLGIPAVVIAYGAFIQAVINFLIIAFAIFLVVKA 93 (130)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhh--hcCC--cChhhheeecCCCceeeeHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666555555555567777772 2233 788877766652 2345667778999887777777663
No 93
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=29.61 E-value=6.3e+02 Score=25.87 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=50.6
Q ss_pred HHHHHHHHhccCcchhh---hhh---hhHH-HHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764 115 VLGSTMLALVFPPSFTW---FTA---RYYA-PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187 (383)
Q Consensus 115 vl~~~~lGl~~P~~~~~---~~~---~~i~-~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~ 187 (383)
++++.+.|+..++.... ..+ +.-. ..+.+-+...|+.+|.+.+.+ ++...+.....-.+..=+..|..++
T Consensus 246 ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~---~~~~~l~~~~~~i~~K~~~~~~~~~ 322 (397)
T COG0475 246 ILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE---NLLLILLLVALAILGKILGAYLAAR 322 (397)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555778888775322 222 2222 455566667999999988876 3343233222233333344555555
Q ss_pred hhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCC
Q 016764 188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDP 224 (383)
Q Consensus 188 l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagG 224 (383)
.++.+...+.+.-+. ..+++..+-+......|
T Consensus 323 ----~~g~~~~~~~~~g~~-~~~~ge~~~v~~~~~~~ 354 (397)
T COG0475 323 ----LLGFSKRLALGIGLL-LRQGGEFAFVLAGIALG 354 (397)
T ss_pred ----HHcCcHHHHHHHHhh-hhhhhHHHHHHHHhccc
Confidence 344333333333222 22334455555555555
No 94
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.87 E-value=99 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 016764 330 LLIITFHLSAFVAGYVVTGLAFA 352 (383)
Q Consensus 330 l~~~ll~~~gf~lG~llar~l~~ 352 (383)
+...+..++|++.||+++|+...
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~ 30 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMK 30 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567789999999987643
No 95
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=27.94 E-value=4.6e+02 Score=23.73 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=56.7
Q ss_pred HHHHHHHHhcc-------CcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhch--hHHHHHHHHHHHHHHHHHHHH
Q 016764 115 VLGSTMLALVF-------PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRP--AAIFAGYVGQFVVKPILGYIF 185 (383)
Q Consensus 115 vl~~~~lGl~~-------P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p--~~ll~~l~~~fvl~Plla~~l 185 (383)
++.+.++|.+- |....+ ..-...+.+-++..|++.-.+-+ +.+|+. +..+.+.+.. ++-.++++.+
T Consensus 30 L~vgL~~G~~~~~~~~~~~~~~~~---~l~~~GL~lFl~~VGl~aG~~F~-~~l~~~G~~~~~~~~~i~-~~~~~~~~~~ 104 (169)
T PF06826_consen 30 LFVGLILGALGRTGPIFLPISAPS---FLRQLGLALFLAAVGLSAGPGFF-SSLKRGGLKLLLLGVIIT-LVPLLIALVI 104 (169)
T ss_pred HHHHHHHHHhhhccCCCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHH-HHHHHHHHHH
Confidence 45666777773 333321 12345666667778888777544 555554 3344443332 2233446666
Q ss_pred HHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCC
Q 016764 186 GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPL 226 (383)
Q Consensus 186 ~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~ 226 (383)
++. .+++++....|.+-=+..-+.....+--...+.|.
T Consensus 105 ~~~---~~~l~~~~~~G~~aGa~T~tp~L~~A~~~~~~~~~ 142 (169)
T PF06826_consen 105 GRY---LFKLNPGIAAGILAGALTSTPALAAAQEAISDSGI 142 (169)
T ss_pred HHH---HcCCCHHHHHHHHHccccCcHHHHHHHHhhhcCCC
Confidence 652 57899999999875443333333333333255554
No 96
>PRK01844 hypothetical protein; Provisional
Probab=27.35 E-value=1.1e+02 Score=24.07 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 016764 330 LLIITFHLSAFVAGYVVTGLAFA 352 (383)
Q Consensus 330 l~~~ll~~~gf~lG~llar~l~~ 352 (383)
+..++..++|.+.|++++|+.+.
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667889999999987654
No 97
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=27.30 E-value=4.6e+02 Score=29.88 Aligned_cols=79 Identities=13% Similarity=-0.009 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCCHHHHHH-H--HhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHH
Q 016764 140 ALGFLMFAVGVNSSEKDFIE-A--FKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN 216 (383)
Q Consensus 140 ~l~l~mf~~Gl~l~~~~l~~-~--~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~ 216 (383)
+-.++++..|+.+++.++.. . ..-|+.+++++++.|+.-|..++.+.. +.+.......-+++.-.-|=|+.|.
T Consensus 300 Ln~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~----li~~~~s~rErlFigWFGpRGIGSI 375 (810)
T TIGR00844 300 LNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKP----LIPDIKSWREAMFIGHFGPIGVGAV 375 (810)
T ss_pred HHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccCCCHHHHHHheeeccccHHHH
Confidence 44455666888888877632 1 124777888888899999888887543 2222223566666666777777765
Q ss_pred HHHHhc
Q 016764 217 YATFLT 222 (383)
Q Consensus 217 v~T~la 222 (383)
++..++
T Consensus 376 yyl~~A 381 (810)
T TIGR00844 376 FAAILS 381 (810)
T ss_pred HHHHHH
Confidence 544433
No 98
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=26.28 E-value=7e+02 Score=26.15 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=34.7
Q ss_pred hhHHHHHH-HHHHHhcCCCCHHHHHHHHhchhHHHHHHHHH--HHHHHHHHHHHHH
Q 016764 135 RYYAPALG-FLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQ--FVVKPILGYIFGT 187 (383)
Q Consensus 135 ~~i~~~l~-l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~--fvl~Plla~~l~~ 187 (383)
.|++=.+. +-+|..|+.++.|-+...++++|-...-.+.. =.+.|.+.|....
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~~n 119 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAVN 119 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 35665444 44566999999988877777776544433322 3566888887643
No 99
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=26.27 E-value=1.8e+02 Score=25.92 Aligned_cols=20 Identities=5% Similarity=-0.205 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 016764 335 FHLSAFVAGYVVTGLAFAEA 354 (383)
Q Consensus 335 l~~~gf~lG~llar~l~~~~ 354 (383)
..++.-.+.+++++++++.+
T Consensus 94 v~~~~~~~~~~~~~~~~~~~ 113 (154)
T TIGR01625 94 ITVVPTLLVAVALIKLLRIN 113 (154)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 33333344455555554543
No 100
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=25.35 E-value=7.7e+02 Score=25.48 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=50.3
Q ss_pred chHHHHHHHhhh-----HHHHHHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHH
Q 016764 98 FSLVNILKQSNS-----FLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYV 172 (383)
Q Consensus 98 ~~~~~~l~~l~~-----~l~~~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~ 172 (383)
.+++|..+-..+ .+|+.++.+...|.+-|.-..... ..+.+.+-+| ..-+++++++.+.+.+--.......
T Consensus 158 ~s~~e~~~~~~~a~~aLllpvIIigGi~~G~fTpTEaa~ia---v~yal~v~~~-vYr~l~~~~l~~~l~~a~~~t~~Vm 233 (379)
T COG1593 158 ASFKERLKAAVKALWALLLPVIIIGGIRSGIFTPTEAAAIA---VLYALLVGAF-VYRELTLKELPKVLLEAVKTTAVVM 233 (379)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH---HHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHH
Confidence 455666665544 455555566666666655443222 2333333333 2336778888888766432222222
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCc
Q 016764 173 GQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSG 211 (383)
Q Consensus 173 ~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~ 211 (383)
.-..-.-..+|.+.. .+.+..++.-+.=..-.|-
T Consensus 234 ~iva~a~~f~~~lt~-----~~vp~~la~~~~~~~~~~~ 267 (379)
T COG1593 234 FIVAAAAAFAWLLTV-----EQVPQQLADWLLSLSDSPL 267 (379)
T ss_pred HHHHHHHHHHHHHHH-----hccHHHHHHHHHhcCCChH
Confidence 212222244555553 4566544444433333333
No 101
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=24.43 E-value=6e+02 Score=23.90 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016764 266 SSILQIVVVPIAAGLLLN 283 (383)
Q Consensus 266 ~~Lll~VllPl~lG~llr 283 (383)
..++...+-|.+.+..+|
T Consensus 194 l~~~~~~~~p~~~a~alr 211 (211)
T TIGR01190 194 LTLATVTLAPFAAAAALR 211 (211)
T ss_pred HHHHHHHHhHHHHHHHcC
Confidence 345567888888877654
No 102
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=24.43 E-value=7.8e+02 Score=25.21 Aligned_cols=125 Identities=16% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCcchhhhh--hhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 111 LPHVVLGSTMLALVFPPSFTWFT--ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI 188 (383)
Q Consensus 111 l~~~vl~~~~lGl~~P~~~~~~~--~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l 188 (383)
.++.+...+.+...+|...+... +..-...+-+.+-..|.+.|.+++.+ .|...+++.+ ...+.=++.+++++
T Consensus 241 ~~il~~tt~~l~~~~~~~~~~l~g~~~lg~~lly~ffa~IGa~a~i~~l~~---ap~~~l~~~i-~l~iH~~l~l~~~k- 315 (378)
T PF05684_consen 241 WLILTVTTLGLATSFPPFRKLLRGASELGTFLLYLFFAVIGASADISELLD---APSLFLFGFI-ILAIHLLLMLILGK- 315 (378)
T ss_pred HHHHHHHHHHHHHhccchhhcCCchHHHHHHHHHHHHHHHccccCHHHHHH---hHHHHHHHHH-HHHHHHHHHHHHHH-
Q ss_pred hhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Q 016764 189 SVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 244 (383)
Q Consensus 189 ~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~ 244 (383)
+++++- ....+--.++.-|...+++++.-.|-+.++-++.+-.+...++-..
T Consensus 316 ---l~k~~l-~~~~vAS~AnIGGpaTA~a~A~a~~~~Lv~pgvL~gvlGyaiGty~ 367 (378)
T PF05684_consen 316 ---LFKIDL-FELLVASNANIGGPATAPAVAAAKGPSLVPPGVLMGVLGYAIGTYL 367 (378)
T ss_pred ---HHCCCH-HHHHHHhhcccCCcchHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
No 103
>PRK00523 hypothetical protein; Provisional
Probab=24.03 E-value=1.5e+02 Score=23.37 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 016764 330 LLIITFHLSAFVAGYVVTGLAFA 352 (383)
Q Consensus 330 l~~~ll~~~gf~lG~llar~l~~ 352 (383)
+..++..++|.+.|++++|+.+.
T Consensus 9 ~l~i~~li~G~~~Gffiark~~~ 31 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445577899999999987654
No 104
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=23.81 E-value=8.4e+02 Score=25.38 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhccCcchhhh
Q 016764 111 LPHVVLGSTMLALVFPPSFTWF 132 (383)
Q Consensus 111 l~~~vl~~~~lGl~~P~~~~~~ 132 (383)
..+.++.+.++|+.+|+...++
T Consensus 13 iligl~lGi~~G~~~~~~~~~l 34 (428)
T PRK01663 13 VLVAIIIGILLGHFYPELGAQM 34 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888999998655544
No 105
>PRK05326 potassium/proton antiporter; Reviewed
Probab=23.65 E-value=5.2e+02 Score=27.65 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHH
Q 016764 140 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT 219 (383)
Q Consensus 140 ~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T 219 (383)
...++++..|+.+++.++.+.. +..+++.++..++.-|+..++... .++.+. ...+.+--+.|=|..+.+++
T Consensus 279 ~~~~~Fv~lGl~~~~~~l~~~~--~~~l~i~~~l~~vaR~l~v~l~~~----~~~~~~--~e~~~i~~~g~RG~v~i~lA 350 (562)
T PRK05326 279 AQIGMFLVLGLLVTPSRLLDIA--LPALLLALFLILVARPLAVFLSLL----PFRFNL--REKLFISWVGLRGAVPIVLA 350 (562)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHc----cCCCCH--hhhheeeeecchhHHHHHHH
Confidence 4455666688888888876432 233444444556666777666554 334332 22233222223232322222
Q ss_pred Hh---c---CCCC-chhHHHHHHHHHHHHHHHHHHHHHHh
Q 016764 220 FL---T---DPPL-APLSIVMTSLSTATAVFVTPLLSLLL 252 (383)
Q Consensus 220 ~l---a---gGd~-~~Lal~lt~istlla~~~~Pl~l~ll 252 (383)
.. + +++. -..+..++.+|++++..++|.....+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l 390 (562)
T PRK05326 351 TFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKL 390 (562)
T ss_pred HHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHc
Confidence 11 1 1111 01344456678888888887766665
No 106
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=23.55 E-value=7.7e+02 Score=24.85 Aligned_cols=156 Identities=14% Similarity=0.024 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 016764 177 VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKR 256 (383)
Q Consensus 177 l~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~ 256 (383)
+-|-++.++-. +.-.|..... .++...+-|-++.. + ..+...+.++-+..|+++.+++.-..+-.
T Consensus 94 l~~~l~~Gl~l----l~~~Pggv~S-~~~t~lAkGnVals---------V-~~tsvStll~~f~tPllv~l~~~~~v~~~ 158 (319)
T COG0385 94 LPPELAVGLLL----LGCCPGGVAS-NAMTYLAKGNVALS---------V-CSTSVSTLLGPFLTPLLVGLLAGGGVPVD 158 (319)
T ss_pred CCHHHHHhHHh----eeeCCCchhH-HHHHHHhcCcHHHH---------H-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 44555555543 2334555555 77777777776654 2 57778888889999999999888655433
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhh-hhhhhhhhhHHHHHHHHH
Q 016764 257 LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFGLTILLLIITF 335 (383)
Q Consensus 257 v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~-~~i~~~~~~~i~l~~~ll 335 (383)
.-=-+++++.++++=+++=+++=..++++.++.. +..+.....+.++++......-..+. +... .....+.+.-.+-
T Consensus 159 ~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~-~~l~~vs~~~illIv~~~~s~~~~~~~~~~~-~v~~~v~~~n~lg 236 (319)
T COG0385 159 VGGMFLSILLQVLLPFVLGQLLRPLLPKWVERLK-KALPPVSVLSILLIVYAAFSAAVENGIWSGL-LIFVAVILHNLLG 236 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcchhhHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHH
Confidence 3323577888888888888888888888877754 44555566677766666644333332 2211 2222344445556
Q ss_pred HHHHHHHHHHHHHH
Q 016764 336 HLSAFVAGYVVTGL 349 (383)
Q Consensus 336 ~~~gf~lG~llar~ 349 (383)
...||..+.+++..
T Consensus 237 ~~~gy~~ar~~g~~ 250 (319)
T COG0385 237 LLLGYFGARLLGFD 250 (319)
T ss_pred HHHHHHHHHHhCCC
Confidence 77888888888743
No 107
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=22.77 E-value=7.3e+02 Score=24.73 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHH
Q 016764 171 YVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS 215 (383)
Q Consensus 171 l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s 215 (383)
.+..+++.-.++|.+++ .++++.+....+.++...=-...+
T Consensus 252 v~l~~~~~~~lg~~~~r----~~~l~~~~~~a~~~e~g~qN~~la 292 (328)
T TIGR00832 252 LLIYFYIMFFLTFALAK----KLGLPYSITAPAAFTGASNNFELA 292 (328)
T ss_pred HHHHHHHHHHHHHHHHH----HhCcChhhhhhheehhhhhhHHHH
Confidence 34556666677777777 668888888887776666443333
No 108
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=21.58 E-value=8.6e+02 Score=24.71 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhH
Q 016764 135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 214 (383)
Q Consensus 135 ~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~ 214 (383)
..-++.+..|++.|-+++|++++-+.-+ |.+.+-+.+.+. -++++.++.....-+-. ..+.++-++.+.=-|| +
T Consensus 60 ~v~n~llpamI~lmLlqcd~Rki~Klg~--rll~ifli~sv~--~vlGfIl~yp~~ksf~g-d~Wka~gmi~gSytGG-S 133 (384)
T COG5505 60 TVWNYLLPAMIPLMLLQCDVRKIFKLGR--RLLFIFLISSVG--TVLGFILAYPLLKSFIG-DLWKAGGMISGSYTGG-S 133 (384)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHhhcc--hhhHHHHHHHHH--HHHHHHHHHHHHhhhcc-hHHhhhhheeeeeeCC-c
Confidence 3445667777777777999888876543 333333333322 24455554432212211 3344554444444443 3
Q ss_pred HHH--HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 016764 215 SNY--ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 251 (383)
Q Consensus 215 s~v--~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~l 251 (383)
.|. +.....=+. ++-......+|+.--+..|+.+++
T Consensus 134 aNmAAmqaaLeVP~-~~fsatlaaDtv~ySll~~lli~i 171 (384)
T COG5505 134 ANMAAMQAALEVPG-EYFSATLAADTVMYSLLFFLLISI 171 (384)
T ss_pred chHHHHHhhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 222222232 233333344555555555554443
No 109
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=21.51 E-value=5e+02 Score=26.48 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHH
Q 016764 139 PALGFLMFAVGVN-SSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAG 202 (383)
Q Consensus 139 ~~l~l~mf~~Gl~-l~~~~l~~~~r~p~~ll~~l~~~fvl~Plla~~l~~l~~~~~~l~~~~a~G 202 (383)
.....+|...|+. .+++++.+.+. +..+..... .-+-+=+.++.+++++ +..+.+..+..|
T Consensus 241 ~lt~~ll~giGla~t~l~~L~~a~t-~~~vviiv~-~Vlg~ii~s~lvGKll-G~YPiE~aItag 302 (347)
T TIGR00783 241 NLTWPLMVGVGVSYIDLDDLVAALS-WQFVVICLS-VVVAMILGGAFLGKLM-GMYPVESAITAG 302 (347)
T ss_pred HHHHHHHHHcccccCCHHHHHHHhc-hhHhhhHHH-HHHHHHHHHHHHHHHh-CCChHHHHHHHh
Confidence 3556667778877 89999999885 444333333 2233346677788732 233334333333
No 110
>COG2985 Predicted permease [General function prediction only]
Probab=21.01 E-value=4.1e+02 Score=28.50 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=55.2
Q ss_pred HHHHHHHhccCcchhhhhhhhHHHHHHHHHHH--hcCCCCHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016764 116 LGSTMLALVFPPSFTWFTARYYAPALGFLMFA--VGVNSSEKDFIEAFKR-PAAIFAGYVGQFVVKPILGYIFGTISVSV 192 (383)
Q Consensus 116 l~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~--~Gl~l~~~~l~~~~r~-p~~ll~~l~~~fvl~Plla~~l~~l~~~~ 192 (383)
.++.+.|++..+..-....+...+-+++++|. .|+..-+.-+.+..+. ++...++++. .+..-+++|.+.+ +
T Consensus 38 ~g~L~Vgl~l~~~~~~i~~~~l~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k----~ 112 (544)
T COG2985 38 FGVLFVGLFLGQYGFTINTDMLHFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHK----L 112 (544)
T ss_pred hhHhHHHHHhcccccccccchhhhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHh----h
Confidence 34445555555554444434455445555554 6666666555444443 3445554444 4445566777776 7
Q ss_pred cCCChhHHHHHHHHhcCCchhHH
Q 016764 193 FGLPTPIGAGIMLVSCVSGAQLS 215 (383)
Q Consensus 193 ~~l~~~~a~GlvL~a~~P~~~~s 215 (383)
+++|..+.+|+.-=+...+....
T Consensus 113 ~~~~~~~~~Gm~sGAlTsTP~L~ 135 (544)
T COG2985 113 FGIDLGLIAGMFSGALTSTPGLG 135 (544)
T ss_pred cCCCHHHhhhhhcccccCCchhH
Confidence 89999999998865555444433
No 111
>TIGR01939 nqrD NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit. This model represents the NqrD subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=20.13 E-value=7.4e+02 Score=23.37 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhhhhhhcccChHHHHHHHH
Q 016764 276 IAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 307 (383)
Q Consensus 276 l~lG~llr~~~p~~~~~i~~~l~~ls~l~lll 307 (383)
..+-++++++.|+..+.+..+++.+..=|+++
T Consensus 83 ~~vem~l~a~~p~Ly~~LGiflpLIvtNCiVL 114 (207)
T TIGR01939 83 IVVDQVLKAFAYDISKQLSVFVGLIITNCIVM 114 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHH
Confidence 34677789999998888888887765555543
Done!