Query 016764
Match_columns 383
No_of_seqs 183 out of 1581
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:24:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 7.1E-44 2.4E-48 352.0 25.7 274 98-382 6-280 (332)
2 2kv5_A FST, putative uncharact 17.1 71 0.0024 20.4 1.9 18 268-285 4-21 (33)
3 3zux_A Transporter, ASBTNM; tr 14.0 7.6E+02 0.026 23.0 15.0 28 174-205 237-264 (332)
4 3hzq_A Large-conductance mecha 10.5 6.6E+02 0.023 20.3 6.9 58 221-278 29-100 (114)
5 1zcd_A Na(+)/H(+) antiporter 1 6.6 9.2E+02 0.031 23.4 6.8 50 135-184 61-113 (388)
6 1vf5_F Protein PET M; photosyn 5.7 6.5E+02 0.022 16.1 3.9 23 327-349 7-29 (35)
7 3tgu_G UQCRQ, mitochondrial ub 5.2 6.3E+02 0.022 19.1 3.7 27 268-294 44-70 (81)
8 1q90_M Cytochrome B6F complex 5.1 7.5E+02 0.026 16.2 4.1 23 327-349 8-30 (39)
9 2h4o_A YONK protein; PSI, prot 4.8 2.3E+02 0.008 20.5 0.9 21 8-28 35-55 (76)
10 2oar_A Large-conductance mecha 4.4 1.6E+03 0.056 19.2 7.6 60 218-278 29-109 (174)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=7.1e-44 Score=352.01 Aligned_cols=274 Identities=25% Similarity=0.449 Sum_probs=253.0
Q ss_pred chH-HHHHHHhhhHHHHHHHHHHHHHhccCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 016764 98 FSL-VNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFV 176 (383)
Q Consensus 98 ~~~-~~~l~~l~~~l~~~vl~~~~lGl~~P~~~~~~~~~~i~~~l~l~mf~~Gl~l~~~~l~~~~r~p~~ll~~l~~~fv 176 (383)
|+. .++.++++++++++++.++++|+.+|+.+.+++ ++++++++++||.+|++++++|+++.++|||.+..++++||+
T Consensus 6 m~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~-~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 6 MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG-PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp -CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGG-GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 553 456789999999999999999999999999886 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCChhHHHHHHHHhcCCchhHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 016764 177 VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKR 256 (383)
Q Consensus 177 l~Plla~~l~~l~~~~~~l~~~~a~GlvL~a~~P~~~~s~v~T~lagGd~~~Lal~lt~istlla~~~~Pl~l~ll~g~~ 256 (383)
++|+++|++++ .++++++++.|+++++|+||+.+|++||+++|||. ++++.++.++|+++++++|+++.++.|++
T Consensus 85 i~Pll~~~l~~----~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~g~~ 159 (332)
T 3zux_A 85 IMPATAWCLSK----LLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLAGEM 159 (332)
T ss_dssp HHHHHHHHHHH----HTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHH----HhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999998 56899999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccChHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHH
Q 016764 257 LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFH 336 (383)
Q Consensus 257 v~id~~~i~~~Lll~VllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~v~a~~~~~i~~~~~~~i~l~~~ll~ 336 (383)
+++|+.+++.+++.++++|+++|+++|++.|++.+++++.+++++...+++++..+++.+.+.+.+. ++.++..+++++
T Consensus 160 ~~v~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~ 238 (332)
T 3zux_A 160 LEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHN 238 (332)
T ss_dssp GHHHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988888888888877664 446777888999
Q ss_pred HHHHHHHHHHHHHhhhccccccccceeeEeeeccCChHHhhhhhcc
Q 016764 337 LSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGVMFLYNKILYSSS 382 (383)
Q Consensus 337 ~~gf~lG~llar~l~~~~~~~~~~~~tla~~tG~rN~~lAl~IA~s 382 (383)
.++|.+||+++|.+ +.++ ++++|+++|+|+||+++|+++|.+
T Consensus 239 ~~~~~lg~~~~r~~-~~~~---~~~~ti~~e~G~qNs~lai~lA~~ 280 (332)
T 3zux_A 239 GIGYLLGFFAAKWT-GLPY---DAQKALTIEVGMQNSGLAAALAAA 280 (332)
T ss_dssp HHHHHHHHHHHHHT-TCCH---HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCH---hHhhhhhhhhhhccHHHHHHHHHH
Confidence 99999999999875 5554 799999999999999999998853
No 2
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=17.07 E-value=71 Score=20.40 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016764 268 ILQIVVVPIAAGLLLNRF 285 (383)
Q Consensus 268 Lll~VllPl~lG~llr~~ 285 (383)
++..++.|++.|+.++-.
T Consensus 4 i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456789999999998844
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=13.98 E-value=7.6e+02 Score=23.05 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhhhccCCChhHHHHHHH
Q 016764 174 QFVVKPILGYIFGTISVSVFGLPTPIGAGIML 205 (383)
Q Consensus 174 ~fvl~Plla~~l~~l~~~~~~l~~~~a~GlvL 205 (383)
.+.+.-.++|.+++ .++.+.+....+.+
T Consensus 237 ~~~~~~~lg~~~~r----~~~~~~~~~~ti~~ 264 (332)
T 3zux_A 237 HNGIGYLLGFFAAK----WTGLPYDAQKALTI 264 (332)
T ss_dssp HHHHHHHHHHHHHH----HTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HhCCCHhHhhhhhh
Confidence 33444445555554 56666665555554
No 4
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=10.52 E-value=6.6e+02 Score=20.31 Aligned_cols=58 Identities=10% Similarity=0.257 Sum_probs=30.9
Q ss_pred hcCCCCchhHHHH-------HHHHHHHHHHHHHHHHHHhhCCcc-------ccChHHHHHHHHHHHHHHHHH
Q 016764 221 LTDPPLAPLSIVM-------TSLSTATAVFVTPLLSLLLIGKRL-------PVDVKGMVSSILQIVVVPIAA 278 (383)
Q Consensus 221 lagGd~~~Lal~l-------t~istlla~~~~Pl~l~ll~g~~v-------~id~~~i~~~Lll~VllPl~l 278 (383)
..+||+..+|+.. ..++++..=+++|+.-.+..|... .++++..+..++-.+++-.++
T Consensus 29 i~rGNViDLAVgVIIG~AF~~IV~SlV~dIImPlIg~l~gg~df~~~l~~~~i~yG~Fi~avInFlIiA~vi 100 (114)
T 3hzq_A 29 ALKGNVLDLAIAVVMGAAFNKIICSLVENIIMPLIGKIFGSVDFAKEWSFWGIKYGLFIQSVIDFIIIAFAL 100 (114)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCSCCCTTCCCSSCCCTHHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCeeeeeeeHHHHHHHHHHHHHHHHHH
Confidence 4566665555443 345556666678876554444322 256665555555444444444
No 5
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=6.57 E-value=9.2e+02 Score=23.41 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=29.3
Q ss_pred hhHHH-HHHHHHHHhcCCCCHHHHHHHHhchhH--HHHHHHHHHHHHHHHHHH
Q 016764 135 RYYAP-ALGFLMFAVGVNSSEKDFIEAFKRPAA--IFAGYVGQFVVKPILGYI 184 (383)
Q Consensus 135 ~~i~~-~l~l~mf~~Gl~l~~~~l~~~~r~p~~--ll~~l~~~fvl~Plla~~ 184 (383)
.|++= .+.+.||..|+.++.+.+...++++|- .-.....-=++.|++.|.
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~ 113 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL 113 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35554 677778889999998876333333322 122222233556888763
No 6
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=5.66 E-value=6.5e+02 Score=16.13 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016764 327 TILLLIITFHLSAFVAGYVVTGL 349 (383)
Q Consensus 327 ~i~l~~~ll~~~gf~lG~llar~ 349 (383)
.++..+..+.++|..+|+++-|.
T Consensus 7 ~~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 7 YAALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhee
Confidence 34566777888899999988753
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=5.18 E-value=6.3e+02 Score=19.06 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016764 268 ILQIVVVPIAAGLLLNRFFPRICNAIR 294 (383)
Q Consensus 268 Lll~VllPl~lG~llr~~~p~~~~~i~ 294 (383)
=++.++.|++++.++-.|..+..++++
T Consensus 44 q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 44 QVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999776555544
No 8
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=5.05 E-value=7.5e+02 Score=16.20 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016764 327 TILLLIITFHLSAFVAGYVVTGL 349 (383)
Q Consensus 327 ~i~l~~~ll~~~gf~lG~llar~ 349 (383)
.++..+..+.++|..+|+++-|.
T Consensus 8 ~~A~i~~~L~LvGla~Gf~LLki 30 (39)
T 1q90_M 8 GTALTMVGMTLVGLAIGFVLLRV 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 35567778888999999998864
No 9
>2h4o_A YONK protein; PSI, protein structure initiative, northeast structural GENO consortium, NESG, structural genomi unknown function; 2.80A {Bacillus subtilis} SCOP: d.368.1.1
Probab=4.76 E-value=2.3e+02 Score=20.53 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=16.5
Q ss_pred HHHHhhhcccceeEEEeeccc
Q 016764 8 LQAQRSRFNSKTFSLTISKHN 28 (383)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (383)
+...-+.||.|..|+||...|
T Consensus 35 ~~e~l~efngknvsitikeen 55 (76)
T 2h4o_A 35 FKEILSEFNGKNVSITVKEEN 55 (76)
T ss_dssp HHHHHHTTTTSCCCCCCCCCC
T ss_pred HHHHHHHhcCceeEEEeeccc
Confidence 345568899999999997665
No 10
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=4.36 E-value=1.6e+03 Score=19.24 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=33.8
Q ss_pred HHHhcCCCCchhHHHH-------HHHHHHHHHHHHHHHHHHhhCCc--------------cccChHHHHHHHHHHHHHHH
Q 016764 218 ATFLTDPPLAPLSIVM-------TSLSTATAVFVTPLLSLLLIGKR--------------LPVDVKGMVSSILQIVVVPI 276 (383)
Q Consensus 218 ~T~lagGd~~~Lal~l-------t~istlla~~~~Pl~l~ll~g~~--------------v~id~~~i~~~Lll~VllPl 276 (383)
-....+||+..+|+.. ..++++..=+++|++- ++.|.. +.++++..+..++-.+++-+
T Consensus 29 KeFi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIg-l~Gg~dfs~l~~~l~~~~~~~~i~yG~Fi~avInFlIIA~ 107 (174)
T 2oar_A 29 KEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLIN-RIGVNAQSDVGILRIGIGGGQTIDLNVLLSAAINFFLIAF 107 (174)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCTTTCCSCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhCCCCcccceEEEecCCCceeeeHHHHHHHHHHHHHHHH
Confidence 3566788776666554 3455566667888865 443321 12466665555555555444
Q ss_pred HH
Q 016764 277 AA 278 (383)
Q Consensus 277 ~l 278 (383)
++
T Consensus 108 vI 109 (174)
T 2oar_A 108 AV 109 (174)
T ss_dssp HH
T ss_pred HH
Confidence 44
Done!