Query 016765
Match_columns 383
No_of_seqs 233 out of 1392
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05489 xylanase_inhibitor_I_l 100.0 1.4E-44 3.1E-49 352.4 30.5 291 1-294 29-361 (362)
2 cd05472 cnd41_like Chloroplast 100.0 5.1E-42 1.1E-46 327.2 30.7 260 23-296 34-299 (299)
3 PLN03146 aspartyl protease fam 100.0 6.9E-42 1.5E-46 340.6 32.4 282 1-298 131-430 (431)
4 KOG1339 Aspartyl protease [Pos 100.0 4E-41 8.6E-46 332.9 28.7 286 1-297 94-397 (398)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 3E-41 6.5E-46 325.7 24.1 250 1-297 50-326 (326)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 4.7E-41 1E-45 324.3 24.0 247 21-293 62-325 (325)
7 cd05478 pepsin_A Pepsin A, asp 100.0 4.6E-41 9.9E-46 323.3 22.9 243 21-293 64-317 (317)
8 PTZ00165 aspartyl protease; Pr 100.0 1.1E-40 2.4E-45 334.1 26.5 249 24-304 182-456 (482)
9 cd05487 renin_like Renin stimu 100.0 2E-40 4.2E-45 320.1 24.0 246 21-294 64-326 (326)
10 cd05486 Cathespin_E Cathepsin 100.0 1.3E-40 2.7E-45 320.1 22.5 246 21-293 54-316 (316)
11 cd05477 gastricsin Gastricsins 100.0 2.7E-40 5.8E-45 318.1 23.8 245 21-294 57-318 (318)
12 cd05476 pepsin_A_like_plant Ch 100.0 5.4E-40 1.2E-44 308.1 25.0 224 23-296 31-265 (265)
13 cd05488 Proteinase_A_fungi Fun 100.0 5E-40 1.1E-44 316.4 23.2 242 21-293 64-320 (320)
14 cd05485 Cathepsin_D_like Cathe 100.0 1.5E-39 3.2E-44 314.3 23.9 246 21-293 67-329 (329)
15 cd05475 nucellin_like Nucellin 100.0 6.4E-39 1.4E-43 302.0 27.6 236 3-296 24-273 (273)
16 cd06098 phytepsin Phytepsin, a 100.0 2.2E-39 4.9E-44 311.5 24.7 236 21-293 65-317 (317)
17 cd05474 SAP_like SAPs, pepsin- 100.0 2.9E-39 6.4E-44 307.4 22.4 243 24-294 31-295 (295)
18 cd05473 beta_secretase_like Be 100.0 9E-38 2E-42 305.9 27.2 271 21-299 53-350 (364)
19 PTZ00147 plasmepsin-1; Provisi 100.0 4.5E-38 9.7E-43 313.1 24.1 244 21-295 193-450 (453)
20 PTZ00013 plasmepsin 4 (PM4); P 100.0 8.5E-38 1.8E-42 310.5 24.5 244 21-295 192-449 (450)
21 PF00026 Asp: Eukaryotic aspar 100.0 1E-36 2.2E-41 292.3 14.1 247 21-294 56-317 (317)
22 cd06097 Aspergillopepsin_like 100.0 1.9E-35 4.2E-40 279.1 19.3 212 21-293 55-278 (278)
23 cd05471 pepsin_like Pepsin-lik 100.0 5.3E-33 1.1E-37 262.0 22.3 217 20-293 55-283 (283)
24 PF14541 TAXi_C: Xylanase inhi 99.9 2.3E-25 4.9E-30 193.4 13.2 154 138-293 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.7 5.4E-18 1.2E-22 147.4 8.8 115 1-119 38-164 (164)
26 cd05470 pepsin_retropepsin_lik 98.5 6.5E-07 1.4E-11 71.9 7.8 56 21-80 53-109 (109)
27 cd05479 RP_DDI RP_DDI; retrope 95.2 0.07 1.5E-06 43.9 6.8 27 265-291 98-124 (124)
28 TIGR02281 clan_AA_DTGA clan AA 95.1 0.2 4.4E-06 41.0 9.1 37 135-185 8-44 (121)
29 TIGR03698 clan_AA_DTGF clan AA 94.0 0.12 2.6E-06 41.3 5.3 25 265-289 83-107 (107)
30 PF08284 RVP_2: Retroviral asp 92.5 0.58 1.3E-05 39.1 7.4 30 265-294 103-132 (135)
31 PF13650 Asp_protease_2: Aspar 87.4 0.89 1.9E-05 34.2 4.0 29 146-185 3-31 (90)
32 cd05484 retropepsin_like_LTR_2 84.8 1.6 3.5E-05 33.4 4.3 31 145-186 4-34 (91)
33 PF13975 gag-asp_proteas: gag- 84.3 1.8 3.8E-05 31.8 4.1 29 146-185 13-41 (72)
34 PF11925 DUF3443: Protein of u 83.1 40 0.00086 32.9 13.6 56 27-83 82-149 (370)
35 cd05483 retropepsin_like_bacte 81.5 2.8 6.1E-05 31.8 4.5 30 145-185 6-35 (96)
36 PF12384 Peptidase_A2B: Ty3 tr 81.0 8.8 0.00019 33.0 7.5 22 165-186 47-68 (177)
37 cd06094 RP_Saci_like RP_Saci_l 78.5 6.3 0.00014 30.3 5.3 21 163-183 9-29 (89)
38 cd06095 RP_RTVL_H_like Retrope 77.3 3.6 7.8E-05 31.2 3.8 29 146-185 3-31 (86)
39 cd05481 retropepsin_like_LTR_1 74.9 26 0.00056 27.0 8.1 22 165-186 12-33 (93)
40 cd05483 retropepsin_like_bacte 74.6 5.3 0.00012 30.2 4.2 53 22-82 42-94 (96)
41 COG3577 Predicted aspartyl pro 73.6 7.3 0.00016 34.7 5.1 38 134-185 101-138 (215)
42 PF00077 RVP: Retroviral aspar 66.0 5.9 0.00013 30.6 2.8 28 144-182 8-35 (100)
43 COG5550 Predicted aspartyl pro 65.2 5.1 0.00011 32.7 2.2 21 166-186 29-50 (125)
44 PF02817 E3_binding: e3 bindin 63.4 4.3 9.3E-05 26.1 1.2 21 363-383 3-23 (39)
45 COG0245 IspF 2C-methyl-D-eryth 60.5 15 0.00032 31.4 4.2 41 341-383 87-127 (159)
46 PF02160 Peptidase_A3: Caulifl 57.1 45 0.00097 29.8 6.9 96 165-294 22-118 (201)
47 PF09668 Asp_protease: Asparty 55.1 16 0.00034 30.0 3.5 30 145-185 28-57 (124)
48 PF02542 YgbB: YgbB family; I 46.9 29 0.00062 29.7 3.9 40 342-383 88-127 (157)
49 KOG0012 DNA damage inducible p 39.6 1.5E+02 0.0032 29.0 7.8 39 257-295 308-347 (380)
50 PF13650 Asp_protease_2: Aspar 38.0 1.6E+02 0.0034 21.5 7.2 50 23-81 40-89 (90)
51 cd00554 MECDP_synthase MECDP_s 34.6 60 0.0013 27.7 4.0 40 342-383 87-126 (153)
52 PRK00084 ispF 2-C-methyl-D-ery 28.3 82 0.0018 27.1 3.8 40 342-383 90-129 (159)
53 PLN02862 2-C-methyl-D-erythrit 26.7 88 0.0019 28.2 3.8 40 342-383 147-186 (216)
54 TIGR02281 clan_AA_DTGA clan AA 26.3 1.3E+02 0.0028 24.3 4.6 48 25-81 55-102 (121)
55 TIGR00151 ispF 2C-methyl-D-ery 25.7 1E+02 0.0022 26.4 3.9 40 342-383 87-126 (155)
56 cd00303 retropepsin_like Retro 25.1 1E+02 0.0022 21.3 3.5 21 165-185 11-31 (92)
57 PF01282 Ribosomal_S24e: Ribos 22.2 1.1E+02 0.0023 23.2 3.1 31 353-383 2-33 (84)
58 PRK09784 hypothetical protein; 21.0 1.4E+02 0.0031 27.3 4.1 45 142-189 356-401 (417)
59 PF02594 DUF167: Uncharacteris 20.1 62 0.0013 24.1 1.4 18 366-383 43-60 (77)
No 1
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.4e-44 Score=352.44 Aligned_cols=291 Identities=23% Similarity=0.419 Sum_probs=226.0
Q ss_pred CCCccccccCCC-CCC------CC----------CCCCCceeEEE-eCCCCeEEEEEEEEEEEeCCCC--C---CCCccE
Q 016765 1 MSNTYQALKCNP-DCN------CD----------NDRKECIYERR-YAEMSTSSGVLGVDVISFGNES--E---LVPQRA 57 (383)
Q Consensus 1 ~Sst~~~~~C~~-~c~------C~----------~~~~~C~~~i~-Y~~g~~~~G~~~~D~v~l~~~~--~---~~~~~~ 57 (383)
+||||+.++|++ .|. |. -.++.|.|... |.+|+.+.|.+++|+|+|+... . .+++++
T Consensus 29 ~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~ 108 (362)
T cd05489 29 HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNF 108 (362)
T ss_pred CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCE
Confidence 489999999996 362 21 12346999766 7789889999999999997532 1 257899
Q ss_pred EEEeeEccCCCCcCCCcceEeecCCCCCchHHHhHhcCCCCCceEEeecCCCCCCCceeeCCCCCCC---------Ccee
Q 016765 58 VFGCENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPP---------DMVF 128 (383)
Q Consensus 58 ~fG~~~~~s~~~~~~~~dGIlGLg~~~~S~~~~L~~~g~I~~~FSl~l~~~~~~~G~l~fGg~d~~~---------~~~~ 128 (383)
.|||+..+........+|||||||++.+|++.||..++.++++||+||.++....|.|+||+.++.+ .+.|
T Consensus 109 ~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~ 188 (362)
T cd05489 109 VFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSY 188 (362)
T ss_pred EEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccc
Confidence 9999987643222335899999999999999999987776689999998765568999999998643 2334
Q ss_pred eecCCC--CCCceeEEEeEEEECCEEeeeCCcee----cCCCceEEecccceeeeCHHHHHHHHHHHHHHccccccccCC
Q 016765 129 SHSDPF--RSPYYNIELKELRVAGKPLKVSPRIF----DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP 202 (383)
Q Consensus 129 ~~~~~~--~~~~w~v~l~~i~v~~~~~~~~~~~~----~~~~~~ivDSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~ 202 (383)
+++... ...+|.|+|++|.||++.+.+++..+ .+...++|||||++++||+++|++|.+++.+++.........
T Consensus 189 tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~ 268 (362)
T cd05489 189 TPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAA 268 (362)
T ss_pred cccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCC
Confidence 443221 24799999999999999998765433 235689999999999999999999999999887643322211
Q ss_pred CCCCccccccCCcCCcccccCCCCeEEEEECC-CeEEEEcCCceEEEecccCCeEEEEEEeCC---CCCeeeccEEEEeE
Q 016765 203 DPNYDDICFSGAGRDVSELSKTFPQVDMVFGN-GQKLTLSPENYLFRHMKVSGAYCLGIFQNS---DSTTLLGGIVVRNT 278 (383)
Q Consensus 203 ~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~-g~~~~l~p~~yi~~~~~~~~~~Cl~~~~~~---~~~~ILG~~Flr~~ 278 (383)
..+.+.||+.....+......+|+|+|+|++ |.++.|+|++|+++... +.+|+++.... ...||||+.|||++
T Consensus 269 -~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG~~~~~~~ 345 (362)
T cd05489 269 -AVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIGGHQMEDN 345 (362)
T ss_pred -CCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEeeheecce
Confidence 1223789987554443334689999999976 79999999999998753 67899887655 34699999999999
Q ss_pred EEEEECCCCEEEEecC
Q 016765 279 LVTYDRGNDKVGFWKT 294 (383)
Q Consensus 279 yvvFD~~~~rIGfa~~ 294 (383)
|++||++++|||||++
T Consensus 346 ~vvyD~~~~riGfa~~ 361 (362)
T cd05489 346 LLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEECCCCEeecccC
Confidence 9999999999999975
No 2
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.1e-42 Score=327.25 Aligned_cols=260 Identities=28% Similarity=0.513 Sum_probs=206.0
Q ss_pred ceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcCCCcceEeecCCCCCchHHHhHhcCCCCCceE
Q 016765 23 CIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFS 102 (383)
Q Consensus 23 C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~~~~dGIlGLg~~~~S~~~~L~~~g~I~~~FS 102 (383)
|.|.+.|++|+.++|.+++|+|+|++. .+++++.|||+..+++.+. ..+||||||+...+++.||..+ .+++||
T Consensus 34 ~~~~i~Yg~Gs~~~G~~~~D~v~ig~~--~~~~~~~Fg~~~~~~~~~~--~~~GilGLg~~~~s~~~ql~~~--~~~~FS 107 (299)
T cd05472 34 CLYQVSYGDGSYTTGDLATDTLTLGSS--DVVPGFAFGCGHDNEGLFG--GAAGLLGLGRGKLSLPSQTASS--YGGVFS 107 (299)
T ss_pred CeeeeEeCCCceEEEEEEEEEEEeCCC--CccCCEEEECCccCCCccC--CCCEEEECCCCcchHHHHhhHh--hcCceE
Confidence 999999999998899999999999983 1678999999988876443 6899999999999999998765 458999
Q ss_pred EeecCCC-CCCCceeeCCCCCCC-CceeeecCCC--CCCceeEEEeEEEECCEEeeeCCceecCCCceEEecccceeeeC
Q 016765 103 LCYGGMD-VGGGAMVLGGITPPP-DMVFSHSDPF--RSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLP 178 (383)
Q Consensus 103 l~l~~~~-~~~G~l~fGg~d~~~-~~~~~~~~~~--~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP 178 (383)
+||.+.+ ...|+|+|||+|++. ++.++++... ...+|.|+|++|.|+++.+.+++.. ..+..++|||||++++||
T Consensus 108 ~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~-~~~~~~ivDSGTt~~~lp 186 (299)
T cd05472 108 YCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS-FGAGGVIIDSGTVITRLP 186 (299)
T ss_pred EEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc-cCCCCeEEeCCCcceecC
Confidence 9998754 557999999999972 3344443322 2468999999999999988764322 135689999999999999
Q ss_pred HHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEecccCCeEEE
Q 016765 179 GHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCL 258 (383)
Q Consensus 179 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~~~~~~~~Cl 258 (383)
+++|++|.+++.++....... ........|++... .. +..+|+|+|+|+++.++.|+|++|++.... .+.+|+
T Consensus 187 ~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~C~~~~~---~~-~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~-~~~~C~ 259 (299)
T cd05472 187 PSAYAALRDAFRAAMAAYPRA--PGFSILDTCYDLSG---FR-SVSVPTVSLHFQGGADVELDASGVLYPVDD-SSQVCL 259 (299)
T ss_pred HHHHHHHHHHHHHHhccCCCC--CCCCCCCccCcCCC---Cc-CCccCCEEEEECCCCEEEeCcccEEEEecC-CCCEEE
Confidence 999999999998876432111 11112335875422 11 257999999996689999999999984332 367899
Q ss_pred EEEeCC--CCCeeeccEEEEeEEEEEECCCCEEEEecCCc
Q 016765 259 GIFQNS--DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (383)
Q Consensus 259 ~~~~~~--~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~~C 296 (383)
++.... ...||||+.|||++|+|||++++|||||+++|
T Consensus 260 ~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 260 AFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 877653 45799999999999999999999999999999
No 3
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=6.9e-42 Score=340.64 Aligned_cols=282 Identities=25% Similarity=0.491 Sum_probs=223.2
Q ss_pred CCCccccccCCC-CCC-------CCCCCCCceeEEEeCCCCeEEEEEEEEEEEeCCCC--CCCCccEEEEeeEccCCCCc
Q 016765 1 MSNTYQALKCNP-DCN-------CDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES--ELVPQRAVFGCENLETGDLY 70 (383)
Q Consensus 1 ~Sst~~~~~C~~-~c~-------C~~~~~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~--~~~~~~~~fG~~~~~s~~~~ 70 (383)
+||||+.++|++ .|. |..+ +.|.|.+.|+||+.+.|.+++|+|+|++.. .++++++.|||++...+.+.
T Consensus 131 ~SST~~~~~C~s~~C~~~~~~~~c~~~-~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~ 209 (431)
T PLN03146 131 KSSTYKDVSCDSSQCQALGNQASCSDE-NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD 209 (431)
T ss_pred CCCCCcccCCCCcccccCCCCCCCCCC-CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc
Confidence 599999999995 573 6533 579999999999988999999999998742 24678999999998776543
Q ss_pred CCCcceEeecCCCCCchHHHhHhcCCCCCceEEeecCCC---CCCCceeeCCCCCCC--CceeeecCCC-CCCceeEEEe
Q 016765 71 TQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMD---VGGGAMVLGGITPPP--DMVFSHSDPF-RSPYYNIELK 144 (383)
Q Consensus 71 ~~~~dGIlGLg~~~~S~~~~L~~~g~I~~~FSl~l~~~~---~~~G~l~fGg~d~~~--~~~~~~~~~~-~~~~w~v~l~ 144 (383)
...+||||||+..+|+++||... +.++||+||.+.. ...|.|+||+..... ...++++... ...+|.|+|+
T Consensus 210 -~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~ 286 (431)
T PLN03146 210 -EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLE 286 (431)
T ss_pred -CCCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEE
Confidence 35899999999999999999763 5579999997532 347999999953322 2445544321 2468999999
Q ss_pred EEEECCEEeeeCCceec--CCCceEEecccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCccccc
Q 016765 145 ELRVAGKPLKVSPRIFD--GGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELS 222 (383)
Q Consensus 145 ~i~v~~~~~~~~~~~~~--~~~~~ivDSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 222 (383)
+|.||++.+.++...|. +...+||||||++++||+++|++|.++|.+++..... .. .......||+... .
T Consensus 287 gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~-~~-~~~~~~~C~~~~~------~ 358 (431)
T PLN03146 287 AISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERV-SD-PQGLLSLCYSSTS------D 358 (431)
T ss_pred EEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccC-CC-CCCCCCccccCCC------C
Confidence 99999999988765442 3357999999999999999999999999887753211 11 1123578986421 1
Q ss_pred CCCCeEEEEECCCeEEEEcCCceEEEecccCCeEEEEEEeCCCCCeeeccEEEEeEEEEEECCCCEEEEecCCcch
Q 016765 223 KTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSE 298 (383)
Q Consensus 223 ~~~P~i~f~f~~g~~~~l~p~~yi~~~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~~C~~ 298 (383)
..+|+|+|+| +|..+.|++++|++.... +.+|+++... .+.||||+.|||++|++||++++|||||+.+|+.
T Consensus 359 ~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~--~~~Cl~~~~~-~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 359 IKLPIITAHF-TGADVKLQPLNTFVKVSE--DLVCFAMIPT-SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred CCCCeEEEEE-CCCeeecCcceeEEEcCC--CcEEEEEecC-CCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 3689999999 589999999999997654 6789988755 4579999999999999999999999999999974
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-41 Score=332.95 Aligned_cols=286 Identities=34% Similarity=0.638 Sum_probs=232.7
Q ss_pred CCCccccccCCC-CC----CCCCCCCCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcC-CCc
Q 016765 1 MSNTYQALKCNP-DC----NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRA 74 (383)
Q Consensus 1 ~Sst~~~~~C~~-~c----~C~~~~~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~-~~~ 74 (383)
+||||+.+.|++ .| .|..+++.|+|.+.|++|+.++|.+++|+|++++...+..+++.|||+..+.+.+.. ...
T Consensus 94 ~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~ 173 (398)
T KOG1339|consen 94 ASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAF 173 (398)
T ss_pred ccccccccCCCCccccccccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCcccccccccc
Confidence 599999999996 35 244467899999999998889999999999999853357778999999999875222 468
Q ss_pred ceEeecCCCCCchHHHhHhcCCCCCceEEeecCCCC---CCCceeeCCCCCCCCce---eeecCCCCCCceeEEEeEEEE
Q 016765 75 DGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDV---GGGAMVLGGITPPPDMV---FSHSDPFRSPYYNIELKELRV 148 (383)
Q Consensus 75 dGIlGLg~~~~S~~~~L~~~g~I~~~FSl~l~~~~~---~~G~l~fGg~d~~~~~~---~~~~~~~~~~~w~v~l~~i~v 148 (383)
|||||||+..+++..|+...+...++||+||.+.+. .+|.|+||+.|+.+... |+++......+|.|.+++|.|
T Consensus 174 dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~v 253 (398)
T KOG1339|consen 174 DGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISV 253 (398)
T ss_pred ceEeecCCCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEE
Confidence 999999999999999999987777899999998643 48999999999998433 444433222499999999999
Q ss_pred CCEEeeeCCceecC-CCceEEecccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCe
Q 016765 149 AGKPLKVSPRIFDG-GHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQ 227 (383)
Q Consensus 149 ~~~~~~~~~~~~~~-~~~~ivDSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~ 227 (383)
+++. .++...+.. ..++++||||++++||+++|++|.++|.+++. . ......+...|+...... ..+|.
T Consensus 254 gg~~-~~~~~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~---~~~~~~~~~~C~~~~~~~-----~~~P~ 323 (398)
T KOG1339|consen 254 GGKR-PIGSSLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-V---VGTDGEYFVPCFSISTSG-----VKLPD 323 (398)
T ss_pred CCcc-CCCcceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhhee-c---cccCCceeeecccCCCCc-----ccCCc
Confidence 9977 666555554 48899999999999999999999999998751 0 123334567998654322 35999
Q ss_pred EEEEECCCeEEEEcCCceEEEecccCCeEEEEEEeCCC--CCeeeccEEEEeEEEEEECC-CCEEEEec--CCcc
Q 016765 228 VDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD--STTLLGGIVVRNTLVTYDRG-NDKVGFWK--TNCS 297 (383)
Q Consensus 228 i~f~f~~g~~~~l~p~~yi~~~~~~~~~~Cl~~~~~~~--~~~ILG~~Flr~~yvvFD~~-~~rIGfa~--~~C~ 297 (383)
|.|+|.+|+.|.+++++|++........ |++++...+ ..||||+.|||+++++||.. ++|||||+ ..|.
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999955999999999999998753222 999998874 38999999999999999999 99999999 6664
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3e-41 Score=325.74 Aligned_cols=250 Identities=27% Similarity=0.469 Sum_probs=198.9
Q ss_pred CCCccccccCCC-CC----CCCCCCCCceeEEEeCCCCeEEEEEEEEEEEeCCCCCC----CCccEEEEeeEccCCCCcC
Q 016765 1 MSNTYQALKCNP-DC----NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESEL----VPQRAVFGCENLETGDLYT 71 (383)
Q Consensus 1 ~Sst~~~~~C~~-~c----~C~~~~~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~----~~~~~~fG~~~~~s~~~~~ 71 (383)
+|+|++.++|++ .| .|. ++.|+|++.|++|+.+.|.+++|+|+|++.... ...++.|||+..+.+.+..
T Consensus 50 ~Sst~~~~~C~~~~c~~~~~~~--~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~ 127 (326)
T cd06096 50 NSITSSILYCDCNKCCYCLSCL--NNKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLT 127 (326)
T ss_pred cccccccccCCCccccccCcCC--CCcCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccc
Confidence 589999999995 34 343 568999999999988899999999999975310 1235789999988877766
Q ss_pred CCcceEeecCCCCC----chHHHhHhcCCCC---CceEEeecCCCCCCCceeeCCCCCCCC-----------ceeeecCC
Q 016765 72 QRADGIMGLGRGRL----SVVDQLVEKGVIS---DSFSLCYGGMDVGGGAMVLGGITPPPD-----------MVFSHSDP 133 (383)
Q Consensus 72 ~~~dGIlGLg~~~~----S~~~~L~~~g~I~---~~FSl~l~~~~~~~G~l~fGg~d~~~~-----------~~~~~~~~ 133 (383)
...+||||||+... +...+|.+++.+. ++||+||++ .+|.|+|||+|+.+. ..+.|.+.
T Consensus 128 ~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~---~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~ 204 (326)
T cd06096 128 QQATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSE---DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPI 204 (326)
T ss_pred cccceEEEccCCcccccCchhHHHHHhcccccCCceEEEEEcC---CCeEEEECccChhhhcccccccccccCCceEEec
Confidence 77899999999864 3445566776653 789999986 359999999998752 23445444
Q ss_pred CCCCceeEEEeEEEECCEEeeeCCceecCCCceEEecccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccC
Q 016765 134 FRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSG 213 (383)
Q Consensus 134 ~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~ 213 (383)
....+|.|.+++|.|+++..... ...+..++|||||++++||++++++|.+++
T Consensus 205 ~~~~~y~v~l~~i~vg~~~~~~~---~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------ 257 (326)
T cd06096 205 TRKYYYYVKLEGLSVYGTTSNSG---NTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------ 257 (326)
T ss_pred cCCceEEEEEEEEEEccccccee---cccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------
Confidence 45689999999999998861111 124568999999999999999999988653
Q ss_pred CcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEecccCCeEEEEEEeCCCCCeeeccEEEEeEEEEEECCCCEEEEec
Q 016765 214 AGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (383)
Q Consensus 214 ~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvvFD~~~~rIGfa~ 293 (383)
|+|+|.|++|+++.++|++|++.... ..+|+ .+...++.+|||++|||++|+|||++++|||||+
T Consensus 258 ------------P~i~~~f~~g~~~~i~p~~y~~~~~~--~~c~~-~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~ 322 (326)
T cd06096 258 ------------PTITIIFENNLKIDWKPSSYLYKKES--FWCKG-GEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVE 322 (326)
T ss_pred ------------CcEEEEEcCCcEEEECHHHhccccCC--ceEEE-EEecCCCceEEChHHhcCcEEEEECcCCEEeeEc
Confidence 89999996589999999999987643 33454 4444467899999999999999999999999999
Q ss_pred CCcc
Q 016765 294 TNCS 297 (383)
Q Consensus 294 ~~C~ 297 (383)
++|.
T Consensus 323 ~~C~ 326 (326)
T cd06096 323 SNCP 326 (326)
T ss_pred CCCC
Confidence 9994
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.7e-41 Score=324.28 Aligned_cols=247 Identities=24% Similarity=0.428 Sum_probs=198.0
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC-CcCCCcceEeecCCCCC------chHHHhHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVE 93 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGIlGLg~~~~------S~~~~L~~ 93 (383)
..|.|.+.|++|+ ++|.+++|+|+|++ +++.++.|||++++++. +.....|||||||++.. +++++|++
T Consensus 62 ~~~~~~i~Yg~G~-~~G~~~~D~v~~g~---~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 137 (325)
T cd05490 62 NGTEFAIQYGSGS-LSGYLSQDTVSIGG---LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMA 137 (325)
T ss_pred CCcEEEEEECCcE-EEEEEeeeEEEECC---EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHh
Confidence 3689999999996 69999999999998 57889999999887664 33456799999999755 57899999
Q ss_pred cCCCC-CceEEeecCCC--CCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEe
Q 016765 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~~--~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivD 169 (383)
+|+|. +.||+||.++. ..+|+|+|||+|+++ ...+.|.+.....+|.|+|++|.|+++.... ..+..++||
T Consensus 138 ~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~-----~~~~~aiiD 212 (325)
T cd05490 138 QKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLC-----KGGCEAIVD 212 (325)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeec-----CCCCEEEEC
Confidence 99997 89999998643 247999999999987 3445555545678999999999998864321 134589999
Q ss_pred cccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEe
Q 016765 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (383)
Q Consensus 170 SGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~ 249 (383)
|||+++++|++++++|.+++.+.. .....|..+|. .. ..+|+|+|+| +|+.|.|+|++|+++.
T Consensus 213 SGTt~~~~p~~~~~~l~~~~~~~~-------~~~~~~~~~C~--------~~-~~~P~i~f~f-gg~~~~l~~~~y~~~~ 275 (325)
T cd05490 213 TGTSLITGPVEEVRALQKAIGAVP-------LIQGEYMIDCE--------KI-PTLPVISFSL-GGKVYPLTGEDYILKV 275 (325)
T ss_pred CCCccccCCHHHHHHHHHHhCCcc-------ccCCCEEeccc--------cc-ccCCCEEEEE-CCEEEEEChHHeEEec
Confidence 999999999999999999885421 11223445563 22 4789999999 7999999999999976
Q ss_pred cccCCeEEEEEEeC------CCCCeeeccEEEEeEEEEEECCCCEEEEec
Q 016765 250 MKVSGAYCLGIFQN------SDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (383)
Q Consensus 250 ~~~~~~~Cl~~~~~------~~~~~ILG~~Flr~~yvvFD~~~~rIGfa~ 293 (383)
.......|+..+.. ....||||++|||++|+|||++++|||||+
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 276 SQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred cCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 54344689876643 145799999999999999999999999996
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4.6e-41 Score=323.27 Aligned_cols=243 Identities=24% Similarity=0.475 Sum_probs=200.8
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcC-CCcceEeecCCCCC------chHHHhHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRL------SVVDQLVE 93 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~-~~~dGIlGLg~~~~------S~~~~L~~ 93 (383)
..|.|++.|++|+ +.|.+++|+|+|++ +++.++.|||++.+.+.+.. ...|||||||++.. +++++|++
T Consensus 64 ~~~~~~~~yg~gs-~~G~~~~D~v~ig~---~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 139 (317)
T cd05478 64 TGQPLSIQYGTGS-MTGILGYDTVQVGG---ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMS 139 (317)
T ss_pred CCcEEEEEECCce-EEEEEeeeEEEECC---EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHh
Confidence 4789999999997 69999999999998 57889999999887765443 35799999998754 58999999
Q ss_pred cCCCC-CceEEeecCCCCCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEecc
Q 016765 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 171 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~~~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivDSG 171 (383)
+|+|+ ++||+||.+.+..+|.|+|||+|+++ ...+.|++.....+|.|.+++|.|+++.+... .+..++||||
T Consensus 140 ~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~-----~~~~~iiDTG 214 (317)
T cd05478 140 QGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACS-----GGCQAIVDTG 214 (317)
T ss_pred CCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccC-----CCCEEEECCC
Confidence 99998 89999999865567999999999876 34455555556789999999999999987532 3458999999
Q ss_pred cceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEecc
Q 016765 172 TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK 251 (383)
Q Consensus 172 ts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~~~ 251 (383)
|+++++|++++++|.+++++... ....+..+|. .. ..+|.|+|+| +|+.+.|+|++|+.+.
T Consensus 215 ts~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~P~~~f~f-~g~~~~i~~~~y~~~~-- 275 (317)
T cd05478 215 TSLLVGPSSDIANIQSDIGASQN-------QNGEMVVNCS--------SI-SSMPDVVFTI-NGVQYPLPPSAYILQD-- 275 (317)
T ss_pred chhhhCCHHHHHHHHHHhCCccc-------cCCcEEeCCc--------Cc-ccCCcEEEEE-CCEEEEECHHHheecC--
Confidence 99999999999999998854321 1123344563 22 4789999999 7999999999999865
Q ss_pred cCCeEEEEEEeCC--CCCeeeccEEEEeEEEEEECCCCEEEEec
Q 016765 252 VSGAYCLGIFQNS--DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (383)
Q Consensus 252 ~~~~~Cl~~~~~~--~~~~ILG~~Flr~~yvvFD~~~~rIGfa~ 293 (383)
...|+..++.. .+.||||++|||++|+|||++++|||||+
T Consensus 276 --~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 --QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 56898777664 36799999999999999999999999996
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.1e-40 Score=334.08 Aligned_cols=249 Identities=18% Similarity=0.304 Sum_probs=202.5
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC-CcCCCcceEeecCCCCC---------chHHHhHh
Q 016765 24 IYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL---------SVVDQLVE 93 (383)
Q Consensus 24 ~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGIlGLg~~~~---------S~~~~L~~ 93 (383)
.+.+.|++|+ ..|.+++|+|+|++ ++++++.||+++.+++. +....+|||||||++.+ +++++|++
T Consensus 182 ~~~i~YGsGs-~~G~l~~DtV~ig~---l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~ 257 (482)
T PTZ00165 182 ETYIQYGTGE-CVLALGKDTVKIGG---LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKK 257 (482)
T ss_pred eEEEEeCCCc-EEEEEEEEEEEECC---EEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHH
Confidence 5779999997 58999999999998 68899999999988664 44557899999999763 58999999
Q ss_pred cCCCC-CceEEeecCCCCCCCceeeCCCCCCCC---ceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEe
Q 016765 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPD---MVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~~~~~G~l~fGg~d~~~~---~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivD 169 (383)
||+|+ ++||+||.+....+|+|+|||+|+.+. ..+.|++.....||.|.+++|.|+++.+.... .+..+++|
T Consensus 258 qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~----~~~~aIiD 333 (482)
T PTZ00165 258 QNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCD----RKCKAAID 333 (482)
T ss_pred cCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecC----CceEEEEc
Confidence 99998 899999987656689999999998752 34666666678899999999999998876532 35689999
Q ss_pred cccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECC--C--eEEEEcCCce
Q 016765 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGN--G--QKLTLSPENY 245 (383)
Q Consensus 170 SGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~--g--~~~~l~p~~y 245 (383)
|||+++++|++++++|.++++. ...|. .. +.+|+|+|+|++ | +++.|+|++|
T Consensus 334 TGTSli~lP~~~~~~i~~~i~~---------------~~~C~--------~~-~~lP~itf~f~g~~g~~v~~~l~p~dY 389 (482)
T PTZ00165 334 TGSSLITGPSSVINPLLEKIPL---------------EEDCS--------NK-DSLPRISFVLEDVNGRKIKFDMDPEDY 389 (482)
T ss_pred CCCccEeCCHHHHHHHHHHcCC---------------ccccc--------cc-ccCCceEEEECCCCCceEEEEEchHHe
Confidence 9999999999999999988732 12563 22 479999999942 1 3899999999
Q ss_pred EEEec--ccCCeEEEEEEeCC------CCCeeeccEEEEeEEEEEECCCCEEEEecCCcchhhhhcc
Q 016765 246 LFRHM--KVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRLQ 304 (383)
Q Consensus 246 i~~~~--~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~~C~~~~~~~~ 304 (383)
+.+.. ...+..|+..+... ++.||||++|||++|+|||++++|||||+++|........
T Consensus 390 i~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~~~~~ 456 (482)
T PTZ00165 390 VIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSGPNFQ 456 (482)
T ss_pred eeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCCCCcEE
Confidence 99752 22456897655432 3579999999999999999999999999999876554333
No 9
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2e-40 Score=320.07 Aligned_cols=246 Identities=24% Similarity=0.465 Sum_probs=200.0
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCC-CCcCCCcceEeecCCCCC------chHHHhHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETG-DLYTQRADGIMGLGRGRL------SVVDQLVE 93 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~-~~~~~~~dGIlGLg~~~~------S~~~~L~~ 93 (383)
..|.|++.|++|+ ++|.+++|+|+|++. .+ ++.||++..... .+.....|||||||++.. +++++|++
T Consensus 64 ~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~---~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 64 NGTEFTIHYASGT-VKGFLSQDIVTVGGI---PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred CCEEEEEEeCCce-EEEEEeeeEEEECCE---Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 4799999999997 799999999999984 44 478999987543 233346899999999754 57899999
Q ss_pred cCCCC-CceEEeecCCC--CCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEe
Q 016765 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~~--~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivD 169 (383)
+|+|+ ++||+||++.+ ...|+|+|||+|+++ ...+.|++.....+|.|+++++.|+++.+... .+..++||
T Consensus 139 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~-----~~~~aiiD 213 (326)
T cd05487 139 QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCE-----DGCTAVVD 213 (326)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecC-----CCCEEEEC
Confidence 99998 89999998753 357999999999988 45566666667889999999999999876532 34589999
Q ss_pred cccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEe
Q 016765 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (383)
Q Consensus 170 SGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~ 249 (383)
|||+++++|++++++|++++++... ...|..+|. .. ..+|+|+|+| ++.++.|++++|+++.
T Consensus 214 SGts~~~lP~~~~~~l~~~~~~~~~--------~~~y~~~C~--------~~-~~~P~i~f~f-gg~~~~v~~~~yi~~~ 275 (326)
T cd05487 214 TGASFISGPTSSISKLMEALGAKER--------LGDYVVKCN--------EV-PTLPDISFHL-GGKEYTLSSSDYVLQD 275 (326)
T ss_pred CCccchhCcHHHHHHHHHHhCCccc--------CCCEEEecc--------cc-CCCCCEEEEE-CCEEEEeCHHHhEEec
Confidence 9999999999999999998854321 123455664 22 4789999999 7999999999999987
Q ss_pred cccCCeEEEEEEeCC------CCCeeeccEEEEeEEEEEECCCCEEEEecC
Q 016765 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (383)
Q Consensus 250 ~~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~ 294 (383)
....+..|+..++.. .+.||||++|||++|+|||++++|||||++
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 276 SDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred cCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 654567898666532 357999999999999999999999999985
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.3e-40 Score=320.06 Aligned_cols=246 Identities=25% Similarity=0.469 Sum_probs=199.0
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC-CcCCCcceEeecCCCCC------chHHHhHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVE 93 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGIlGLg~~~~------S~~~~L~~ 93 (383)
..|+|++.|++|+ +.|.+++|+|+|++ +++.++.|||+..+++. +.....|||||||++.+ +++++|++
T Consensus 54 ~~~~~~i~Yg~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~ 129 (316)
T cd05486 54 NGEAFSIQYGTGS-LTGIIGIDQVTVEG---ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMA 129 (316)
T ss_pred CCcEEEEEeCCcE-EEEEeeecEEEECC---EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHh
Confidence 4799999999996 69999999999998 57889999999877664 33457899999999765 47899999
Q ss_pred cCCCC-CceEEeecCCC--CCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEe
Q 016765 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~~--~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivD 169 (383)
+|+|+ ++||+||.+.. ...|+|+|||+|+++ ...+.|++.....+|.|++++|.|+++.+..+ .+..++||
T Consensus 130 qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~-----~~~~aiiD 204 (316)
T cd05486 130 QNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCS-----DGCQAIVD 204 (316)
T ss_pred cCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecC-----CCCEEEEC
Confidence 99998 88999998642 347999999999986 34455555556789999999999999876432 34589999
Q ss_pred cccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEe
Q 016765 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (383)
Q Consensus 170 SGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~ 249 (383)
|||+++++|++++++|.+++.+.. ....|..+|. .. ..+|+|+|+| +|+.++|+|++|++..
T Consensus 205 TGTs~~~lP~~~~~~l~~~~~~~~--------~~~~~~~~C~--------~~-~~~p~i~f~f-~g~~~~l~~~~y~~~~ 266 (316)
T cd05486 205 TGTSLITGPSGDIKQLQNYIGATA--------TDGEYGVDCS--------TL-SLMPSVTFTI-NGIPYSLSPQAYTLED 266 (316)
T ss_pred CCcchhhcCHHHHHHHHHHhCCcc--------cCCcEEEecc--------cc-ccCCCEEEEE-CCEEEEeCHHHeEEec
Confidence 999999999999999988774321 1223445663 22 4799999999 7999999999999875
Q ss_pred cccCCeEEEEEEeCC------CCCeeeccEEEEeEEEEEECCCCEEEEec
Q 016765 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (383)
Q Consensus 250 ~~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvvFD~~~~rIGfa~ 293 (383)
.......|+..++.. .+.||||++|||++|+|||.+++|||||+
T Consensus 267 ~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 267 QSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred ccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 332356898766432 35799999999999999999999999996
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.7e-40 Score=318.11 Aligned_cols=245 Identities=21% Similarity=0.453 Sum_probs=198.0
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC-CcCCCcceEeecCCCC------CchHHHhHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGR------LSVVDQLVE 93 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGIlGLg~~~------~S~~~~L~~ 93 (383)
..|.|++.|++|+ +.|.+++|+|+|++ ++++++.|||++...+. +.....+||||||++. .+++++|++
T Consensus 57 ~~~~~~~~Yg~Gs-~~G~~~~D~i~~g~---~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~ 132 (318)
T cd05477 57 NGETFSLQYGSGS-LTGIFGYDTVTVQG---IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQ 132 (318)
T ss_pred CCcEEEEEECCcE-EEEEEEeeEEEECC---EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHh
Confidence 4799999999997 69999999999998 57889999999887653 3334679999999864 379999999
Q ss_pred cCCCC-CceEEeecCCC-CCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEec
Q 016765 94 KGVIS-DSFSLCYGGMD-VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~~-~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivDS 170 (383)
+|+|. ++||+||.+.. ..+|.|+|||+|+.+ ...+.|++.....+|.|++++|.|+++.+.+.. .+..++|||
T Consensus 133 ~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~----~~~~~iiDS 208 (318)
T cd05477 133 QNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCS----QGCQAIVDT 208 (318)
T ss_pred cCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccC----CCceeeECC
Confidence 99998 89999998752 347999999999887 334555555567899999999999999875432 345799999
Q ss_pred ccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEec
Q 016765 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (383)
Q Consensus 171 Gts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~~ 250 (383)
||+++++|++++++|+++++++.. ....|..+|. .. ..+|+|+|+| +|+++.|++++|+...
T Consensus 209 Gtt~~~lP~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~p~l~~~f-~g~~~~v~~~~y~~~~- 270 (318)
T cd05477 209 GTSLLTAPQQVMSTLMQSIGAQQD-------QYGQYVVNCN--------NI-QNLPTLTFTI-NGVSFPLPPSAYILQN- 270 (318)
T ss_pred CCccEECCHHHHHHHHHHhCCccc-------cCCCEEEeCC--------cc-ccCCcEEEEE-CCEEEEECHHHeEecC-
Confidence 999999999999999998865432 1223445564 22 4789999999 7899999999999875
Q ss_pred ccCCeEEEEEEeCC-------CCCeeeccEEEEeEEEEEECCCCEEEEecC
Q 016765 251 KVSGAYCLGIFQNS-------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (383)
Q Consensus 251 ~~~~~~Cl~~~~~~-------~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~ 294 (383)
...|+..+... .+.||||++|||++|++||++++|||||++
T Consensus 271 ---~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 ---NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ---CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 45786544321 246999999999999999999999999985
No 12
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.4e-40 Score=308.05 Aligned_cols=224 Identities=38% Similarity=0.716 Sum_probs=190.4
Q ss_pred ceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcCCCcceEeecCCCCCchHHHhHhcCCCCCceE
Q 016765 23 CIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFS 102 (383)
Q Consensus 23 C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~~~~dGIlGLg~~~~S~~~~L~~~g~I~~~FS 102 (383)
|.|.+.|+||+.++|.+++|+|+|++.. .+++++.|||++.+++ +....++||||||+...|+++||..++ ++||
T Consensus 31 ~~~~~~Y~dg~~~~G~~~~D~v~~g~~~-~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs 105 (265)
T cd05476 31 CSYEYSYGDGSSTSGVLATETFTFGDSS-VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFS 105 (265)
T ss_pred CceEeEeCCCceeeeeEEEEEEEecCCC-CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeE
Confidence 8999999999899999999999999842 2678999999998877 555678999999999999999999887 8999
Q ss_pred EeecCC--CCCCCceeeCCCCCCC--CceeeecCCC--CCCceeEEEeEEEECCEEeeeCCcee----cCCCceEEeccc
Q 016765 103 LCYGGM--DVGGGAMVLGGITPPP--DMVFSHSDPF--RSPYYNIELKELRVAGKPLKVSPRIF----DGGHGTVLDSGT 172 (383)
Q Consensus 103 l~l~~~--~~~~G~l~fGg~d~~~--~~~~~~~~~~--~~~~w~v~l~~i~v~~~~~~~~~~~~----~~~~~~ivDSGt 172 (383)
+||.+. ...+|+|+||++|+++ ...|+++... ...+|.|+|++|.|+++.+.+++..+ .....++|||||
T Consensus 106 ~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGT 185 (265)
T cd05476 106 YCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGT 185 (265)
T ss_pred EEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCC
Confidence 999875 3568999999999974 3444444332 25799999999999999887543221 245689999999
Q ss_pred ceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEeccc
Q 016765 173 TYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKV 252 (383)
Q Consensus 173 s~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~~~~ 252 (383)
++++||++++ |+|+|+|++++++.+++++|+....
T Consensus 186 s~~~lp~~~~-------------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-- 220 (265)
T cd05476 186 TLTYLPDPAY-------------------------------------------PDLTLHFDGGADLELPPENYFVDVG-- 220 (265)
T ss_pred cceEcCcccc-------------------------------------------CCEEEEECCCCEEEeCcccEEEECC--
Confidence 9999999776 8899999659999999999998654
Q ss_pred CCeEEEEEEeCC-CCCeeeccEEEEeEEEEEECCCCEEEEecCCc
Q 016765 253 SGAYCLGIFQNS-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (383)
Q Consensus 253 ~~~~Cl~~~~~~-~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~~C 296 (383)
.+.+|+++.... .+.||||++|||++|++||++++|||||+++|
T Consensus 221 ~~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 221 EGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 367999988773 77899999999999999999999999999999
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5e-40 Score=316.42 Aligned_cols=242 Identities=23% Similarity=0.454 Sum_probs=196.8
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC-CcCCCcceEeecCCCCC------chHHHhHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVE 93 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGIlGLg~~~~------S~~~~L~~ 93 (383)
..|.|++.|++|+ ++|.+++|+|+|++ ++++++.|||++.+.+. +.....|||||||++.. +.+.+|++
T Consensus 64 ~~~~~~~~y~~g~-~~G~~~~D~v~ig~---~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 139 (320)
T cd05488 64 NGTEFKIQYGSGS-LEGFVSQDTLSIGD---LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMIN 139 (320)
T ss_pred CCCEEEEEECCce-EEEEEEEeEEEECC---EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHh
Confidence 4799999999997 69999999999988 57789999999877654 23346799999999765 35678999
Q ss_pred cCCCC-CceEEeecCCCCCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEecc
Q 016765 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 171 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~~~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivDSG 171 (383)
+|+|. +.||+||++.....|.|+|||+|+.+ ...+.|++.....+|.|++++|.||++.+..+ +..++||||
T Consensus 140 qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~------~~~~ivDSG 213 (320)
T cd05488 140 QGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELE------NTGAAIDTG 213 (320)
T ss_pred cCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccC------CCeEEEcCC
Confidence 99997 89999999865568999999999876 33455555455789999999999999877542 357999999
Q ss_pred cceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEecc
Q 016765 172 TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK 251 (383)
Q Consensus 172 ts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~~~ 251 (383)
|+++++|++++++|.+++++... ....|..+|. +. ..+|.|+|+| +|+++.|+|++|++..
T Consensus 214 tt~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~P~i~f~f-~g~~~~i~~~~y~~~~-- 274 (320)
T cd05488 214 TSLIALPSDLAEMLNAEIGAKKS-------WNGQYTVDCS--------KV-DSLPDLTFNF-DGYNFTLGPFDYTLEV-- 274 (320)
T ss_pred cccccCCHHHHHHHHHHhCCccc-------cCCcEEeecc--------cc-ccCCCEEEEE-CCEEEEECHHHheecC--
Confidence 99999999999999988853321 1223334553 32 4799999999 7999999999999854
Q ss_pred cCCeEEEEEEeCC------CCCeeeccEEEEeEEEEEECCCCEEEEec
Q 016765 252 VSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (383)
Q Consensus 252 ~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvvFD~~~~rIGfa~ 293 (383)
...|+..+... .+.||||++|||++|+|||++++|||||+
T Consensus 275 --~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 --SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred --CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 45798777642 34799999999999999999999999986
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.5e-39 Score=314.30 Aligned_cols=246 Identities=23% Similarity=0.429 Sum_probs=198.4
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC-CcCCCcceEeecCCCCCc------hHHHhHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRLS------VVDQLVE 93 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGIlGLg~~~~S------~~~~L~~ 93 (383)
..|.|.+.|++|+ ++|.+++|+|+|++ ++++++.|||+.++.+. +.....+||||||++..+ ++.+|++
T Consensus 67 ~~~~~~i~Y~~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~ 142 (329)
T cd05485 67 NGTEFAIQYGSGS-LSGFLSTDTVSVGG---VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVN 142 (329)
T ss_pred CCeEEEEEECCce-EEEEEecCcEEECC---EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHh
Confidence 4699999999997 79999999999998 47789999999877653 334568999999998653 6899999
Q ss_pred cCCCC-CceEEeecCCC--CCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEe
Q 016765 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~~--~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivD 169 (383)
+|+|+ ++||+||.+.. ..+|+|+|||+|+++ ...+.|.+.....+|.|.++++.++++.+. ..+..++||
T Consensus 143 qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~------~~~~~~iiD 216 (329)
T cd05485 143 QKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC------SGGCQAIAD 216 (329)
T ss_pred CCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec------CCCcEEEEc
Confidence 99997 89999998643 247999999999887 344555554567899999999999998763 134579999
Q ss_pred cccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEe
Q 016765 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (383)
Q Consensus 170 SGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~ 249 (383)
|||+++++|++++++|.+++.+... ....|..+|. .. ..+|+|+|+| +++++.|+|++|+++.
T Consensus 217 SGtt~~~lP~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~p~i~f~f-gg~~~~i~~~~yi~~~ 279 (329)
T cd05485 217 TGTSLIAGPVDEIEKLNNAIGAKPI-------IGGEYMVNCS--------AI-PSLPDITFVL-GGKSFSLTGKDYVLKV 279 (329)
T ss_pred cCCcceeCCHHHHHHHHHHhCCccc-------cCCcEEEecc--------cc-ccCCcEEEEE-CCEEeEEChHHeEEEe
Confidence 9999999999999999988854211 1123445563 22 4689999999 7999999999999987
Q ss_pred cccCCeEEEEEEeCC------CCCeeeccEEEEeEEEEEECCCCEEEEec
Q 016765 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (383)
Q Consensus 250 ~~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvvFD~~~~rIGfa~ 293 (383)
...+..+|+..+... ++.||||++|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 280 TQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 654456898765531 35699999999999999999999999985
No 15
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.4e-39 Score=302.00 Aligned_cols=236 Identities=33% Similarity=0.664 Sum_probs=188.7
Q ss_pred CccccccCCCCC-CCCCCCCCceeEEEeCCCCeEEEEEEEEEEEeCCC-CCCCCccEEEEeeEccCCCC--cCCCcceEe
Q 016765 3 NTYQALKCNPDC-NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNE-SELVPQRAVFGCENLETGDL--YTQRADGIM 78 (383)
Q Consensus 3 st~~~~~C~~~c-~C~~~~~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~-~~~~~~~~~fG~~~~~s~~~--~~~~~dGIl 78 (383)
|+--+++|+..| .| .|.|++.|+|++.++|.+++|+|+|+.. .....+++.|||+..+.+.+ .....||||
T Consensus 24 S~~~Wv~c~~~c~~c-----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIl 98 (273)
T cd05475 24 SDLTWLQCDAPCTGC-----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGIL 98 (273)
T ss_pred CCceEEeCCCCCCCC-----cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEE
Confidence 334456786434 34 6899999998888999999999999753 12467789999998776543 234689999
Q ss_pred ecCCCCCchHHHhHhcCCCCCceEEeecCCCCCCCceeeCCCCCCCCceeeecCCCC---CCceeEEEeEEEECCEEeee
Q 016765 79 GLGRGRLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFR---SPYYNIELKELRVAGKPLKV 155 (383)
Q Consensus 79 GLg~~~~S~~~~L~~~g~I~~~FSl~l~~~~~~~G~l~fGg~d~~~~~~~~~~~~~~---~~~w~v~l~~i~v~~~~~~~ 155 (383)
|||+...++++||.++++|+++||+||.+ ..+|.|+||+... +...+.|.+... ..+|.|++.+|.||++.+.
T Consensus 99 GLg~~~~s~~~ql~~~~~i~~~Fs~~l~~--~~~g~l~~G~~~~-~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~- 174 (273)
T cd05475 99 GLGRGKISLPSQLASQGIIKNVIGHCLSS--NGGGFLFFGDDLV-PSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG- 174 (273)
T ss_pred ECCCCCCCHHHHHHhcCCcCceEEEEccC--CCCeEEEECCCCC-CCCCeeecccccCCCCCeEEEeEeEEEECCEECc-
Confidence 99999999999999999998899999987 4469999995432 222334433333 4799999999999998542
Q ss_pred CCceecCCCceEEecccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCC
Q 016765 156 SPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNG 235 (383)
Q Consensus 156 ~~~~~~~~~~~ivDSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g 235 (383)
..+..++|||||++++||+++| +|+|+|.|++.
T Consensus 175 -----~~~~~~ivDTGTt~t~lp~~~y------------------------------------------~p~i~~~f~~~ 207 (273)
T cd05475 175 -----GKGLEVVFDSGSSYTYFNAQAY------------------------------------------FKPLTLKFGKG 207 (273)
T ss_pred -----CCCceEEEECCCceEEcCCccc------------------------------------------cccEEEEECCC
Confidence 1356899999999999999765 58899999543
Q ss_pred ---eEEEEcCCceEEEecccCCeEEEEEEeCC----CCCeeeccEEEEeEEEEEECCCCEEEEecCCc
Q 016765 236 ---QKLTLSPENYLFRHMKVSGAYCLGIFQNS----DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (383)
Q Consensus 236 ---~~~~l~p~~yi~~~~~~~~~~Cl~~~~~~----~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~~C 296 (383)
++++|+|++|+..... +..|++++... .+.||||+.|||++|+|||++++|||||+++|
T Consensus 208 ~~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 208 WRTRLLEIPPENYLIISEK--GNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CceeEEEeCCCceEEEcCC--CCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 7999999999987543 56899998764 24799999999999999999999999999998
No 16
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.2e-39 Score=311.49 Aligned_cols=236 Identities=27% Similarity=0.452 Sum_probs=191.8
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC-CcCCCcceEeecCCCCC------chHHHhHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVE 93 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGIlGLg~~~~------S~~~~L~~ 93 (383)
..+.+.+.|++|+ ++|.+++|+|+|++ ++++++.||+++.+.+. +.....|||||||++.. +++++|++
T Consensus 65 ~~~~~~i~Yg~G~-~~G~~~~D~v~ig~---~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 140 (317)
T cd06098 65 NGTSASIQYGTGS-ISGFFSQDSVTVGD---LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVE 140 (317)
T ss_pred CCCEEEEEcCCce-EEEEEEeeEEEECC---EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHh
Confidence 3678999999997 69999999999998 57889999999877553 44456899999999754 47889999
Q ss_pred cCCCC-CceEEeecCCC--CCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEe
Q 016765 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~~--~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivD 169 (383)
+|+|+ ++||+||++.. ...|+|+|||+|+++ ...+.|.+.....||.|.+++|.|+++.+.+.. ....++||
T Consensus 141 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~----~~~~aivD 216 (317)
T cd06098 141 QGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCA----GGCAAIAD 216 (317)
T ss_pred cCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecC----CCcEEEEe
Confidence 99998 78999998642 357999999999987 344455544567899999999999999876532 34579999
Q ss_pred cccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEe
Q 016765 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (383)
Q Consensus 170 SGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~ 249 (383)
|||+++++|++++++|. +..+|+. . ..+|+|+|+| +|+.+.|+|++|+++.
T Consensus 217 TGTs~~~lP~~~~~~i~-------------------~~~~C~~--------~-~~~P~i~f~f-~g~~~~l~~~~yi~~~ 267 (317)
T cd06098 217 SGTSLLAGPTTIVTQIN-------------------SAVDCNS--------L-SSMPNVSFTI-GGKTFELTPEQYILKV 267 (317)
T ss_pred cCCcceeCCHHHHHhhh-------------------ccCCccc--------c-ccCCcEEEEE-CCEEEEEChHHeEEee
Confidence 99999999998876553 2345742 2 4799999999 7999999999999887
Q ss_pred cccCCeEEEEEEeCC------CCCeeeccEEEEeEEEEEECCCCEEEEec
Q 016765 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (383)
Q Consensus 250 ~~~~~~~Cl~~~~~~------~~~~ILG~~Flr~~yvvFD~~~~rIGfa~ 293 (383)
.......|+..+... ++.||||++|||++|+|||++++|||||+
T Consensus 268 ~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 268 GEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred cCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 544456898766431 34699999999999999999999999995
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.9e-39 Score=307.39 Aligned_cols=243 Identities=21% Similarity=0.355 Sum_probs=196.4
Q ss_pred eeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcCCCcceEeecCCCCC-----------chHHHhH
Q 016765 24 IYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRL-----------SVVDQLV 92 (383)
Q Consensus 24 ~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~~~~dGIlGLg~~~~-----------S~~~~L~ 92 (383)
+|++.|++|+.+.|.+++|+|++++. .+.++.|||+++.. ..+||||||+... +++++|+
T Consensus 31 ~~~~~Y~~g~~~~G~~~~D~v~~g~~---~~~~~~fg~~~~~~------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~ 101 (295)
T cd05474 31 DFSISYGDGTSASGTWGTDTVSIGGA---TVKNLQFAVANSTS------SDVGVLGIGLPGNEATYGTGYTYPNFPIALK 101 (295)
T ss_pred eeEEEeccCCcEEEEEEEEEEEECCe---EecceEEEEEecCC------CCcceeeECCCCCcccccCCCcCCCHHHHHH
Confidence 69999999888999999999999984 67899999998742 4799999999775 6999999
Q ss_pred hcCCCC-CceEEeecCCCCCCCceeeCCCCCCC---CceeeecCCCC----CCceeEEEeEEEECCEEeeeCCceecCCC
Q 016765 93 EKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP---DMVFSHSDPFR----SPYYNIELKELRVAGKPLKVSPRIFDGGH 164 (383)
Q Consensus 93 ~~g~I~-~~FSl~l~~~~~~~G~l~fGg~d~~~---~~~~~~~~~~~----~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 164 (383)
++|+|+ +.||+||.+.+...|.|+|||+|+.+ ...++++.... ..+|.|++++|.++++.+..+. .....
T Consensus 102 ~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~--~~~~~ 179 (295)
T cd05474 102 KQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL--LSKNL 179 (295)
T ss_pred HCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc--cCCCc
Confidence 999998 89999999865568999999999876 23444443322 2789999999999998875321 23567
Q ss_pred ceEEecccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCc
Q 016765 165 GTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPEN 244 (383)
Q Consensus 165 ~~ivDSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~ 244 (383)
.++|||||++++||++++++|.+++.+.... ....+..+|+. . .. |+|+|+| +|.++.|++++
T Consensus 180 ~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~------~~~~~~~~C~~--------~-~~-p~i~f~f-~g~~~~i~~~~ 242 (295)
T cd05474 180 PALLDSGTTLTYLPSDIVDAIAKQLGATYDS------DEGLYVVDCDA--------K-DD-GSLTFNF-GGATISVPLSD 242 (295)
T ss_pred cEEECCCCccEeCCHHHHHHHHHHhCCEEcC------CCcEEEEeCCC--------C-CC-CEEEEEE-CCeEEEEEHHH
Confidence 8999999999999999999999999765431 12244566753 2 23 9999999 68999999999
Q ss_pred eEEEecc--cCCeEEEEEEeCC-CCCeeeccEEEEeEEEEEECCCCEEEEecC
Q 016765 245 YLFRHMK--VSGAYCLGIFQNS-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (383)
Q Consensus 245 yi~~~~~--~~~~~Cl~~~~~~-~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~ 294 (383)
|+++... ..+..|+..+... .+.||||.+|||++|++||++++|||||++
T Consensus 243 ~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 243 LVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred hEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9987642 2356785444444 478999999999999999999999999986
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=9e-38 Score=305.92 Aligned_cols=271 Identities=25% Similarity=0.370 Sum_probs=197.2
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcC-CCcceEeecCCCCC--------chHHHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRL--------SVVDQL 91 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~-~~~dGIlGLg~~~~--------S~~~~L 91 (383)
..|.|++.|++|+ ++|.+++|+|+|++.... ...+.|+++....+.+.. ...|||||||++.+ +++++|
T Consensus 53 ~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~-~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l 130 (364)
T cd05473 53 LGKGVTVPYTQGS-WEGELGTDLVSIPKGPNV-TFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSL 130 (364)
T ss_pred CCceEEEEECcce-EEEEEEEEEEEECCCCcc-ceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHH
Confidence 5899999999996 699999999999863211 112345666554443332 35799999999754 588899
Q ss_pred HhcCCCCCceEEeecCC---------CCCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceec
Q 016765 92 VEKGVISDSFSLCYGGM---------DVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFD 161 (383)
Q Consensus 92 ~~~g~I~~~FSl~l~~~---------~~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 161 (383)
++|+.++++||++|+.. ....|.|+|||+|+++ ...+.|.+.....+|.|.+++|.|+++.+.++...+.
T Consensus 131 ~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~ 210 (364)
T cd05473 131 VKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYN 210 (364)
T ss_pred HhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEeccccccccc
Confidence 99999888999988631 1247999999999887 2334444444567999999999999998876543322
Q ss_pred CCCceEEecccceeeeCHHHHHHHHHHHHHHccccccccCC-CCCCccccccCCcCCcccccCCCCeEEEEECCC-----
Q 016765 162 GGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP-DPNYDDICFSGAGRDVSELSKTFPQVDMVFGNG----- 235 (383)
Q Consensus 162 ~~~~~ivDSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g----- 235 (383)
...++|||||++++||++++++|.+++.++.... ..... ...+...|+..... ....+|+|+|+|+++
T Consensus 211 -~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~C~~~~~~----~~~~~P~i~~~f~g~~~~~~ 284 (364)
T cd05473 211 -YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIE-DFPDGFWLGSQLACWQKGTT----PWEIFPKISIYLRDENSSQS 284 (364)
T ss_pred -CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccc-cCCccccCcceeecccccCc----hHhhCCcEEEEEccCCCCce
Confidence 2369999999999999999999999998875311 01000 01123467643211 113699999999642
Q ss_pred eEEEEcCCceEEEeccc-CCeEEEEEEe-CCCCCeeeccEEEEeEEEEEECCCCEEEEecCCcchh
Q 016765 236 QKLTLSPENYLFRHMKV-SGAYCLGIFQ-NSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSEL 299 (383)
Q Consensus 236 ~~~~l~p~~yi~~~~~~-~~~~Cl~~~~-~~~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~~C~~~ 299 (383)
.++.|+|++|+...... .+..|+++.. ...+.||||+.|||++|+|||++++|||||+++|...
T Consensus 285 ~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 285 FRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred EEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 47899999999865321 2467975332 2356799999999999999999999999999999874
No 19
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=4.5e-38 Score=313.08 Aligned_cols=244 Identities=23% Similarity=0.318 Sum_probs=192.3
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC---CcCCCcceEeecCCCCC------chHHHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD---LYTQRADGIMGLGRGRL------SVVDQL 91 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~---~~~~~~dGIlGLg~~~~------S~~~~L 91 (383)
..|.|++.|++|+ ++|.+++|+|+|++ ++++ ..|+++..+.+. +....+|||||||++.+ +++++|
T Consensus 193 ~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~---~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L 267 (453)
T PTZ00147 193 DGTKVEMNYVSGT-VSGFFSKDLVTIGN---LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVEL 267 (453)
T ss_pred CCCEEEEEeCCCC-EEEEEEEEEEEECC---EEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHH
Confidence 4789999999996 79999999999998 3555 579988766541 23346899999999865 478899
Q ss_pred HhcCCCC-CceEEeecCCCCCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEe
Q 016765 92 VEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (383)
Q Consensus 92 ~~~g~I~-~~FSl~l~~~~~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivD 169 (383)
+++|+|+ ++||+||++.+...|.|+|||+|+++ ...+.|.+.....+|.|.++ +.+++... .+..++||
T Consensus 268 ~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~~--------~~~~aIiD 338 (453)
T PTZ00147 268 KNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVSS--------EKANVIVD 338 (453)
T ss_pred HHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEec--------CceeEEEC
Confidence 9999998 78999998765668999999999987 34445544456789999998 57776432 24689999
Q ss_pred cccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEe
Q 016765 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (383)
Q Consensus 170 SGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~ 249 (383)
|||+++++|++++++|.+++.+... ...+.+..+|+. ..+|+|+|.| +|..++|+|++|+...
T Consensus 339 SGTsli~lP~~~~~ai~~~l~~~~~------~~~~~y~~~C~~----------~~lP~~~f~f-~g~~~~L~p~~yi~~~ 401 (453)
T PTZ00147 339 SGTSVITVPTEFLNKFVESLDVFKV------PFLPLYVTTCNN----------TKLPTLEFRS-PNKVYTLEPEYYLQPI 401 (453)
T ss_pred CCCchhcCCHHHHHHHHHHhCCeec------CCCCeEEEeCCC----------CCCCeEEEEE-CCEEEEECHHHheecc
Confidence 9999999999999999998854211 112234456642 3689999999 7999999999999865
Q ss_pred cccCCeEEEEEEeCC---CCCeeeccEEEEeEEEEEECCCCEEEEecCC
Q 016765 250 MKVSGAYCLGIFQNS---DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (383)
Q Consensus 250 ~~~~~~~Cl~~~~~~---~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~~ 295 (383)
.......|+..+... .+.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 402 EDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 443456797655432 3579999999999999999999999999985
No 20
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=8.5e-38 Score=310.53 Aligned_cols=244 Identities=22% Similarity=0.326 Sum_probs=190.7
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC---CcCCCcceEeecCCCCC------chHHHh
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD---LYTQRADGIMGLGRGRL------SVVDQL 91 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~---~~~~~~dGIlGLg~~~~------S~~~~L 91 (383)
..|.|++.|++|+ +.|.+++|+|+|++. +++ ..|+++...... +....+|||||||++.+ +++++|
T Consensus 192 ~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~---~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L 266 (450)
T PTZ00013 192 DGTKVDITYGSGT-VKGFFSKDLVTLGHL---SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVEL 266 (450)
T ss_pred CCcEEEEEECCce-EEEEEEEEEEEECCE---EEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHH
Confidence 4699999999997 799999999999983 554 578888765421 23346899999999765 588999
Q ss_pred HhcCCCC-CceEEeecCCCCCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEe
Q 016765 92 VEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (383)
Q Consensus 92 ~~~g~I~-~~FSl~l~~~~~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivD 169 (383)
+++|+|+ ++||+||++.+...|.|+|||+|+++ ...+.|.+.....+|.|+++ +.+|.... .+..++||
T Consensus 267 ~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~--------~~~~aIlD 337 (450)
T PTZ00013 267 KNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM--------QKANVIVD 337 (450)
T ss_pred HhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec--------cccceEEC
Confidence 9999998 78999998765568999999999987 34455555456789999998 66654332 24579999
Q ss_pred cccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEe
Q 016765 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (383)
Q Consensus 170 SGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~ 249 (383)
|||+++++|+++++++.++++.... ...+.+..+|+ . ..+|+|+|.| +|.+++|+|++|+...
T Consensus 338 SGTSli~lP~~~~~~i~~~l~~~~~------~~~~~y~~~C~--------~--~~lP~i~F~~-~g~~~~L~p~~Yi~~~ 400 (450)
T PTZ00013 338 SGTTTITAPSEFLNKFFANLNVIKV------PFLPFYVTTCD--------N--KEMPTLEFKS-ANNTYTLEPEYYMNPL 400 (450)
T ss_pred CCCccccCCHHHHHHHHHHhCCeec------CCCCeEEeecC--------C--CCCCeEEEEE-CCEEEEECHHHheehh
Confidence 9999999999999999988753211 11223445663 2 3789999999 7899999999999764
Q ss_pred cccCCeEEEEEEeCC---CCCeeeccEEEEeEEEEEECCCCEEEEecCC
Q 016765 250 MKVSGAYCLGIFQNS---DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (383)
Q Consensus 250 ~~~~~~~Cl~~~~~~---~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~~ 295 (383)
....+..|+..+... ++.||||++|||++|+|||++++|||||+++
T Consensus 401 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 401 LDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 333456897665442 4579999999999999999999999999874
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1e-36 Score=292.35 Aligned_cols=247 Identities=30% Similarity=0.529 Sum_probs=203.6
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC-CcCCCcceEeecCCCC-------CchHHHhH
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGR-------LSVVDQLV 92 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGIlGLg~~~-------~S~~~~L~ 92 (383)
..+++.+.|++|+ ++|.+++|+|+|++ +.+.++.||++....+. +.....+||||||++. .+++++|+
T Consensus 56 ~~~~~~~~y~~g~-~~G~~~~D~v~ig~---~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~ 131 (317)
T PF00026_consen 56 QGKPFSISYGDGS-VSGNLVSDTVSIGG---LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLV 131 (317)
T ss_dssp EEEEEEEEETTEE-EEEEEEEEEEEETT---EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHH
T ss_pred ceeeeeeeccCcc-cccccccceEeeee---ccccccceeccccccccccccccccccccccCCcccccccCCcceecch
Confidence 3678999999998 89999999999998 57788999999986553 3345789999999743 47999999
Q ss_pred hcCCCC-CceEEeecCCCCCCCceeeCCCCCCC-CceeeecCCCCCCceeEEEeEEEECCEEeeeCCceecCCCceEEec
Q 016765 93 EKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (383)
Q Consensus 93 ~~g~I~-~~FSl~l~~~~~~~G~l~fGg~d~~~-~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivDS 170 (383)
++|+|. ++||++|++.....|.|+|||+|+++ ...+.|++.....+|.+.+++|.++++.... .....++|||
T Consensus 132 ~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~-----~~~~~~~~Dt 206 (317)
T PF00026_consen 132 QQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFS-----SSGQQAILDT 206 (317)
T ss_dssp HTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEE-----EEEEEEEEET
T ss_pred hhccccccccceeeeecccccchheeeccccccccCceeccCccccccccccccccccccccccc-----ccceeeeccc
Confidence 999998 88999999876668999999999987 4455666555889999999999999993321 2235799999
Q ss_pred ccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEec
Q 016765 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (383)
Q Consensus 171 Gts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~~ 250 (383)
|+++++||.+++++|++++...... ..+..+| +.. ..+|.|+|.| ++.++.|+|++|+.+..
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~--------~~~~~~c--------~~~-~~~p~l~f~~-~~~~~~i~~~~~~~~~~ 268 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD--------GVYSVPC--------NST-DSLPDLTFTF-GGVTFTIPPSDYIFKIE 268 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC--------SEEEEET--------TGG-GGSEEEEEEE-TTEEEEEEHHHHEEEES
T ss_pred ccccccccchhhHHHHhhhcccccc--------eeEEEec--------ccc-cccceEEEee-CCEEEEecchHhccccc
Confidence 9999999999999999999765541 2334455 333 4789999999 79999999999999987
Q ss_pred ccCCeEEEEEEeC----C-CCCeeeccEEEEeEEEEEECCCCEEEEecC
Q 016765 251 KVSGAYCLGIFQN----S-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (383)
Q Consensus 251 ~~~~~~Cl~~~~~----~-~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~ 294 (383)
......|+..+.. . .+.+|||.+|||++|++||++++|||||++
T Consensus 269 ~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 269 DGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp STTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 6545589777766 2 678999999999999999999999999985
No 22
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.9e-35 Score=279.08 Aligned_cols=212 Identities=18% Similarity=0.298 Sum_probs=169.5
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCC-CcCCCcceEeecCCCCC---------chHHH
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL---------SVVDQ 90 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~-~~~~~~dGIlGLg~~~~---------S~~~~ 90 (383)
+.|+|.+.|++|+.++|.+++|+|+|++ .+++++.||+++.+++. +.....|||||||++.. +++++
T Consensus 55 ~~~~~~i~Y~~G~~~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~ 131 (278)
T cd06097 55 PGATWSISYGDGSSASGIVYTDTVSIGG---VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFEN 131 (278)
T ss_pred CCcEEEEEeCCCCeEEEEEEEEEEEECC---EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHH
Confidence 4699999999998889999999999998 47889999999988764 33457899999999754 47888
Q ss_pred hHhcCCCCCceEEeecCCCCCCCceeeCCCCCCC-CceeeecCCCC-CCceeEEEeEEEECCEEeeeCCceecCCCceEE
Q 016765 91 LVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFR-SPYYNIELKELRVAGKPLKVSPRIFDGGHGTVL 168 (383)
Q Consensus 91 L~~~g~I~~~FSl~l~~~~~~~G~l~fGg~d~~~-~~~~~~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~iv 168 (383)
|.+++. ++.||+||.+ ...|+|+|||+|+++ ...+.|.+... ..+|.|++++|.|+++.... ..+..++|
T Consensus 132 l~~~~~-~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~-----~~~~~~ii 203 (278)
T cd06097 132 ALSSLD-APLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS-----RSGFSAIA 203 (278)
T ss_pred HHHhcc-CceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee-----cCCceEEe
Confidence 998865 7899999986 457999999999887 33444544333 68999999999999884322 23568999
Q ss_pred ecccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEEE
Q 016765 169 DSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFR 248 (383)
Q Consensus 169 DSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~ 248 (383)
||||+++++|++++++|.+++..... ......|..+| +. .+|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~g~~~-----~~~~~~~~~~C--------~~---~~P~i~f~~---------------- 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVPGAYY-----DSEYGGWVFPC--------DT---TLPDLSFAV---------------- 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCcCCcc-----cCCCCEEEEEC--------CC---CCCCEEEEE----------------
Confidence 99999999999999999988832111 01122334445 32 389999998
Q ss_pred ecccCCeEEEEEEeCCCCCeeeccEEEEeEEEEEECCCCEEEEec
Q 016765 249 HMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (383)
Q Consensus 249 ~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvvFD~~~~rIGfa~ 293 (383)
.||||++|||++|+|||++++|||||+
T Consensus 252 ------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999996
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=5.3e-33 Score=262.03 Aligned_cols=217 Identities=31% Similarity=0.568 Sum_probs=176.8
Q ss_pred CCCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcCCCcceEeecCCCC------CchHHHhHh
Q 016765 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGR------LSVVDQLVE 93 (383)
Q Consensus 20 ~~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~~~~dGIlGLg~~~------~S~~~~L~~ 93 (383)
+..|.|++.|++|+ ++|.+++|+|+|++. +++++.|||++.....+.....+||||||+.. .+++++|.+
T Consensus 55 ~~~~~~~~~Y~~g~-~~g~~~~D~v~~~~~---~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~ 130 (283)
T cd05471 55 DTGCTFSITYGDGS-VTGGLGTDTVTIGGL---TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKS 130 (283)
T ss_pred cCCCEEEEEECCCe-EEEEEEEeEEEECCE---EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHH
Confidence 56899999999875 699999999999984 57899999999887755556789999999988 689999999
Q ss_pred cCCCC-CceEEeecCC--CCCCCceeeCCCCCCC-CceeeecCCCC--CCceeEEEeEEEECCEEeeeCCceecCCCceE
Q 016765 94 KGVIS-DSFSLCYGGM--DVGGGAMVLGGITPPP-DMVFSHSDPFR--SPYYNIELKELRVAGKPLKVSPRIFDGGHGTV 167 (383)
Q Consensus 94 ~g~I~-~~FSl~l~~~--~~~~G~l~fGg~d~~~-~~~~~~~~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~i 167 (383)
+++|. ++||+||.+. ....|.|+|||+|+.+ ...+.|.+... ..+|.|.+++|.|+++.... ......++
T Consensus 131 ~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~----~~~~~~~i 206 (283)
T cd05471 131 QGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVIS----SSGGGGAI 206 (283)
T ss_pred CCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeee----cCCCcEEE
Confidence 99987 8999999985 3568999999999985 33344443333 78999999999999974111 12456899
Q ss_pred EecccceeeeCHHHHHHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCCceEE
Q 016765 168 LDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLF 247 (383)
Q Consensus 168 vDSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~ 247 (383)
|||||++++||++++++|++++.+.... ...|+. ..|.. ...+|+|+|+|
T Consensus 207 iDsGt~~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~~---~~~~~-~~~~p~i~f~f--------------- 256 (283)
T cd05471 207 VDSGTSLIYLPSSVYDAILKALGAAVSS-----------SDGGYG---VDCSP-CDTLPDITFTF--------------- 256 (283)
T ss_pred EecCCCCEeCCHHHHHHHHHHhCCcccc-----------cCCcEE---EeCcc-cCcCCCEEEEE---------------
Confidence 9999999999999999999999766542 111211 11222 26899999999
Q ss_pred EecccCCeEEEEEEeCCCCCeeeccEEEEeEEEEEECCCCEEEEec
Q 016765 248 RHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (383)
Q Consensus 248 ~~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvvFD~~~~rIGfa~ 293 (383)
.+|||++|||++|++||++++|||||+
T Consensus 257 -------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999985
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.93 E-value=2.3e-25 Score=193.41 Aligned_cols=154 Identities=33% Similarity=0.628 Sum_probs=120.7
Q ss_pred ceeEEEeEEEECCEEeeeCCcee---cCCCceEEecccceeeeCHHHHHHHHHHHHHHcccccccc-CCCCCCccccccC
Q 016765 138 YYNIELKELRVAGKPLKVSPRIF---DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIR-GPDPNYDDICFSG 213 (383)
Q Consensus 138 ~w~v~l~~i~v~~~~~~~~~~~~---~~~~~~ivDSGts~~~lP~~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~~C~~~ 213 (383)
+|.|+|++|+||++.+.+++..| ++...++|||||++++||+++|++|++++.+++....... ......+..||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 59999999999999999998877 3567899999999999999999999999999886542110 1223457899988
Q ss_pred CcCCcccccCCCCeEEEEECCCeEEEEcCCceEEEecccCCeEEEEEEeC---CCCCeeeccEEEEeEEEEEECCCCEEE
Q 016765 214 AGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQN---SDSTTLLGGIVVRNTLVTYDRGNDKVG 290 (383)
Q Consensus 214 ~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~~yi~~~~~~~~~~Cl~~~~~---~~~~~ILG~~Flr~~yvvFD~~~~rIG 290 (383)
....-...+..+|+|+|+|.+|.+++|++++|++.... +.+|+++... .++..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 66323344579999999998899999999999999874 7999999999 478899999999999999999999999
Q ss_pred Eec
Q 016765 291 FWK 293 (383)
Q Consensus 291 fa~ 293 (383)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.74 E-value=5.4e-18 Score=147.44 Aligned_cols=115 Identities=36% Similarity=0.706 Sum_probs=93.1
Q ss_pred CCCccccccCCC-CC--------CCCCCCCCceeEEEeCCCCeEEEEEEEEEEEeCCCC--CCCCccEEEEeeEccCCCC
Q 016765 1 MSNTYQALKCNP-DC--------NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES--ELVPQRAVFGCENLETGDL 69 (383)
Q Consensus 1 ~Sst~~~~~C~~-~c--------~C~~~~~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~--~~~~~~~~fG~~~~~s~~~ 69 (383)
+||||++++|++ .| .|...++.|.|.+.|++++.+.|.+++|+|+++... .....++.|||+....+.+
T Consensus 38 ~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~ 117 (164)
T PF14543_consen 38 KSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF 117 (164)
T ss_dssp TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS
T ss_pred cCCcccccCCCCcchhhcccccccCCCCcCcccceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC
Confidence 599999999985 35 355557899999999999999999999999998742 1356789999999988654
Q ss_pred cCCCcceEeecCCCCCchHHHhHhcCCCCCceEEeecC-CCCCCCceeeCC
Q 016765 70 YTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGG-MDVGGGAMVLGG 119 (383)
Q Consensus 70 ~~~~~dGIlGLg~~~~S~~~~L~~~g~I~~~FSl~l~~-~~~~~G~l~fGg 119 (383)
. ..+||||||+..+||+.||.++ ..++||+||.+ .....|.|+||+
T Consensus 118 ~--~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 118 Y--GADGILGLGRGPLSLPSQLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp T--TEEEEEE-SSSTTSHHHHHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred c--CCCcccccCCCcccHHHHHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 4 7899999999999999999998 55899999998 446789999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=98.46 E-value=6.5e-07 Score=71.94 Aligned_cols=56 Identities=34% Similarity=0.620 Sum_probs=48.0
Q ss_pred CCceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCc-CCCcceEeec
Q 016765 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLY-TQRADGIMGL 80 (383)
Q Consensus 21 ~~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~-~~~~dGIlGL 80 (383)
..|+|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+.+. ....+|||||
T Consensus 53 ~~~~~~~~Y~~g~-~~g~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 53 NGCTFSITYGTGS-LSGGLSTDTVSIGD---IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCcEEEEEeCCCe-EEEEEEEEEEEECC---EEECCEEEEEEEecCCccccccccccccCC
Confidence 4799999999986 68999999999988 4678999999999887633 3568999998
No 27
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.20 E-value=0.07 Score=43.88 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.7
Q ss_pred CCCeeeccEEEEeEEEEEECCCCEEEE
Q 016765 265 DSTTLLGGIVVRNTLVTYDRGNDKVGF 291 (383)
Q Consensus 265 ~~~~ILG~~Flr~~yvvFD~~~~rIGf 291 (383)
....|||..||+.+-.+.|..+++|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 456899999999999999999998753
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.08 E-value=0.2 Score=41.01 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCCceeEEEeEEEECCEEeeeCCceecCCCceEEecccceeeeCHHHHHHH
Q 016765 135 RSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (383)
Q Consensus 135 ~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~~~i 185 (383)
..++|.++ +.|||+++ .++||||.+.+.+++++.+++
T Consensus 8 ~~g~~~v~---~~InG~~~-----------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-----------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-----------EEEEECCCCcEEcCHHHHHHc
Confidence 45566555 67888865 569999999999999988765
No 29
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=94.04 E-value=0.12 Score=41.33 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.5
Q ss_pred CCCeeeccEEEEeEEEEEECCCCEE
Q 016765 265 DSTTLLGGIVVRNTLVTYDRGNDKV 289 (383)
Q Consensus 265 ~~~~ILG~~Flr~~yvvFD~~~~rI 289 (383)
.+..+||..||+++-++.|+.++++
T Consensus 83 ~~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 83 VDEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CCccEecHHHHhhCCEEEehhhCcC
Confidence 3578999999999999999987653
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.53 E-value=0.58 Score=39.08 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=26.7
Q ss_pred CCCeeeccEEEEeEEEEEECCCCEEEEecC
Q 016765 265 DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (383)
Q Consensus 265 ~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~ 294 (383)
+-..|||.++|+.+..+-|..+++|-|...
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 446899999999999999999999999753
No 31
>PF13650 Asp_protease_2: Aspartyl protease
Probab=87.39 E-value=0.89 Score=34.23 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=24.5
Q ss_pred EEECCEEeeeCCceecCCCceEEecccceeeeCHHHHHHH
Q 016765 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (383)
Q Consensus 146 i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~~~i 185 (383)
+.|||+++ .++||||++.+.+++++++++
T Consensus 3 v~vng~~~-----------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----------EEEEcCCCCcEEECHHHHHHc
Confidence 56777755 579999999999999998776
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=84.83 E-value=1.6 Score=33.40 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.1
Q ss_pred EEEECCEEeeeCCceecCCCceEEecccceeeeCHHHHHHHH
Q 016765 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFK 186 (383)
Q Consensus 145 ~i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~~~i~ 186 (383)
.+.|+|+.+ .++||||++.+.++++.+.++-
T Consensus 4 ~~~Ing~~i-----------~~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPL-----------KFQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEE-----------EEEEcCCcceEEeCHHHHHHhC
Confidence 367888877 4699999999999999998664
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.30 E-value=1.8 Score=31.81 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=25.1
Q ss_pred EEECCEEeeeCCceecCCCceEEecccceeeeCHHHHHHH
Q 016765 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (383)
Q Consensus 146 i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~~~i 185 (383)
+.|+++.+ .+++|||.+..+++++..+.+
T Consensus 13 ~~I~g~~~-----------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-----------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-----------EEEEeCCCcceecCHHHHHHh
Confidence 67788766 479999999999999999877
No 34
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=83.13 E-value=40 Score=32.94 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=34.3
Q ss_pred EEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEe----------eEccCCC--CcCCCcceEeecCCC
Q 016765 27 RRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGC----------ENLETGD--LYTQRADGIMGLGRG 83 (383)
Q Consensus 27 i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~----------~~~~s~~--~~~~~~dGIlGLg~~ 83 (383)
..|.+|. ..|-+.+..|+|++.....++-|.++- ....... .....++||||+|.-
T Consensus 82 ~~F~sgy-tWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 AQFASGY-TWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hhccCcc-cccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 5677764 689999999999996323333344432 1111100 113468999999874
No 35
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=81.45 E-value=2.8 Score=31.78 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=24.3
Q ss_pred EEEECCEEeeeCCceecCCCceEEecccceeeeCHHHHHHH
Q 016765 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (383)
Q Consensus 145 ~i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~~~i 185 (383)
.+.+|++.+ .++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-----------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----------EEEEECCCCcEEcCHHHHHHc
Confidence 367777765 579999999999999887665
No 36
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=81.04 E-value=8.8 Score=33.00 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=19.2
Q ss_pred ceEEecccceeeeCHHHHHHHH
Q 016765 165 GTVLDSGTTYAYLPGHAFAAFK 186 (383)
Q Consensus 165 ~~ivDSGts~~~lP~~~~~~i~ 186 (383)
.++||||++..+.-.++.+.|.
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEeCCCccceeehhhHHhhC
Confidence 6799999999999998887765
No 37
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=78.45 E-value=6.3 Score=30.32 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.1
Q ss_pred CCceEEecccceeeeCHHHHH
Q 016765 163 GHGTVLDSGTTYAYLPGHAFA 183 (383)
Q Consensus 163 ~~~~ivDSGts~~~lP~~~~~ 183 (383)
+...+||||.-...+|....+
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CcEEEEeCCCceEeecccccc
Confidence 457899999999999986543
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=77.27 E-value=3.6 Score=31.19 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.8
Q ss_pred EEECCEEeeeCCceecCCCceEEecccceeeeCHHHHHHH
Q 016765 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (383)
Q Consensus 146 i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~~~i 185 (383)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-----------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----------EEEEECCCCeEEECHHHhhhc
Confidence 67788876 469999999999999998875
No 39
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=74.94 E-value=26 Score=27.02 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.4
Q ss_pred ceEEecccceeeeCHHHHHHHH
Q 016765 165 GTVLDSGTTYAYLPGHAFAAFK 186 (383)
Q Consensus 165 ~~ivDSGts~~~lP~~~~~~i~ 186 (383)
.+.+|||.+...+|...++.+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 6799999999999999887664
No 40
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=74.57 E-value=5.3 Score=30.18 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=39.0
Q ss_pred CceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcCCCcceEeecCC
Q 016765 22 ECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGR 82 (383)
Q Consensus 22 ~C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~~~~dGIlGLg~ 82 (383)
...+.+...+|........-+.+++++ ++..++++........ ..|||||+.+
T Consensus 42 ~~~~~~~~~~G~~~~~~~~~~~i~ig~---~~~~~~~~~v~d~~~~-----~~~gIlG~d~ 94 (96)
T cd05483 42 GGKVTVQTANGRVRAARVRLDSLQIGG---ITLRNVPAVVLPGDAL-----GVDGLLGMDF 94 (96)
T ss_pred CCcEEEEecCCCccceEEEcceEEECC---cEEeccEEEEeCCccc-----CCceEeChHH
Confidence 456777778887767777799999998 4666777777654432 4899999864
No 41
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=73.55 E-value=7.3 Score=34.71 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCCCceeEEEeEEEECCEEeeeCCceecCCCceEEecccceeeeCHHHHHHH
Q 016765 134 FRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (383)
Q Consensus 134 ~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~~~i 185 (383)
..++||.++ ..|||+.+. .+||||.|...++++..+.+
T Consensus 101 ~~~GHF~a~---~~VNGk~v~-----------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 101 SRDGHFEAN---GRVNGKKVD-----------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred cCCCcEEEE---EEECCEEEE-----------EEEecCcceeecCHHHHHHh
Confidence 356677766 689999884 59999999999999887655
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=66.01 E-value=5.9 Score=30.63 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=22.3
Q ss_pred eEEEECCEEeeeCCceecCCCceEEecccceeeeCHHHH
Q 016765 144 KELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAF 182 (383)
Q Consensus 144 ~~i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~ 182 (383)
..|.++|+.+ .++||||+..+.++++.+
T Consensus 8 i~v~i~g~~i-----------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 8 ITVKINGKKI-----------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEETTEEE-----------EEEEETTBSSEEESSGGS
T ss_pred EEEeECCEEE-----------EEEEecCCCcceeccccc
Confidence 3477788866 579999999999998644
No 43
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=65.25 E-value=5.1 Score=32.69 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.7
Q ss_pred eEEecccc-eeeeCHHHHHHHH
Q 016765 166 TVLDSGTT-YAYLPGHAFAAFK 186 (383)
Q Consensus 166 ~ivDSGts-~~~lP~~~~~~i~ 186 (383)
.++|||.+ ++.+|+++++++.
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 48999999 9999999998765
No 44
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=63.35 E-value=4.3 Score=26.07 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=15.5
Q ss_pred cchhHHHHHHhhhcccCcCCC
Q 016765 363 PNFTELSEFIAHELQVDDIEV 383 (383)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~ 383 (383)
+..+-.|..+|+|++||.+||
T Consensus 3 i~asP~ar~la~e~gidl~~v 23 (39)
T PF02817_consen 3 IKASPAARKLAAELGIDLSQV 23 (39)
T ss_dssp CCCSHHHHHHHHHTT--GGGS
T ss_pred cccCHHHHHHHHHcCCCcccc
Confidence 445668899999999999886
No 45
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=60.47 E-value=15 Score=31.40 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=34.2
Q ss_pred CceEEEEEEEEEEeeecCCCCCcchhHHHHHHhhhcccCcCCC
Q 016765 341 GAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEV 383 (383)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
....|+++- +.+.....+|.|+..++.++||+-|+++.+||
T Consensus 87 ~g~~i~Nvd--~tii~~~PK~~P~~~amr~~ia~~L~i~~~~i 127 (159)
T COG0245 87 KGYRIGNVD--ITIIAQRPKLGPYREAMRANIAELLGIPVDRI 127 (159)
T ss_pred hCcEEEeEE--EEEEEecCcccchHHHHHHHHHHHhCCCchhe
Confidence 456788774 44555999999999999999999999998875
No 46
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=57.09 E-value=45 Score=29.81 Aligned_cols=96 Identities=14% Similarity=0.249 Sum_probs=52.3
Q ss_pred ceEEecccceeeeCHHHH-HHHHHHHHHHccccccccCCCCCCccccccCCcCCcccccCCCCeEEEEECCCeEEEEcCC
Q 016765 165 GTVLDSGTTYAYLPGHAF-AAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPE 243 (383)
Q Consensus 165 ~~ivDSGts~~~lP~~~~-~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~p~ 243 (383)
.++||||.+.-.....++ +..++.... ...+.+++... ..++...+.+.+.+ ++..|.+|-
T Consensus 22 ~~~vDTGAt~C~~~~~iiP~e~we~~~~----~i~v~~an~~~------------~~i~~~~~~~~i~I-~~~~F~IP~- 83 (201)
T PF02160_consen 22 HCYVDTGATICCASKKIIPEEYWEKSKK----PIKVKGANGSI------------IQINKKAKNGKIQI-ADKIFRIPT- 83 (201)
T ss_pred EEEEeCCCceEEecCCcCCHHHHHhCCC----cEEEEEecCCc------------eEEEEEecCceEEE-ccEEEeccE-
Confidence 689999999877655554 111111100 00111211110 12234566667776 465555542
Q ss_pred ceEEEecccCCeEEEEEEeCCCCCeeeccEEEEeEEEEEECCCCEEEEecC
Q 016765 244 NYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (383)
Q Consensus 244 ~yi~~~~~~~~~~Cl~~~~~~~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~ 294 (383)
++.. ..+-..|||.+|+|.|.=-.+.+ .+|-|..-
T Consensus 84 --iYq~-------------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~~ 118 (201)
T PF02160_consen 84 --IYQQ-------------ESGIDIILGNNFLRLYEPFIQTE-DRIQFHKK 118 (201)
T ss_pred --EEEe-------------cCCCCEEecchHHHhcCCcEEEc-cEEEEEeC
Confidence 2211 12456999999999888666665 47888653
No 47
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=55.14 E-value=16 Score=30.03 Aligned_cols=30 Identities=13% Similarity=0.342 Sum_probs=24.0
Q ss_pred EEEECCEEeeeCCceecCCCceEEecccceeeeCHHHHHHH
Q 016765 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (383)
Q Consensus 145 ~i~v~~~~~~~~~~~~~~~~~~ivDSGts~~~lP~~~~~~i 185 (383)
.+.+||+.+ .|+||||+..+.++.+..+++
T Consensus 28 ~~~ing~~v-----------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-----------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-----------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-----------EEEEeCCCCccccCHHHHHHc
Confidence 377899877 589999999999999998874
No 48
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=46.88 E-value=29 Score=29.75 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=33.3
Q ss_pred ceEEEEEEEEEEeeecCCCCCcchhHHHHHHhhhcccCcCCC
Q 016765 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEV 383 (383)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
...|++| ++.+.....++.|+..+..+.||.-|+++.+||
T Consensus 88 g~~i~ni--D~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V 127 (157)
T PF02542_consen 88 GYRIVNI--DITIIAERPKISPYRPAMRENLAKLLGIPPDRV 127 (157)
T ss_dssp TEEEEEE--EEEEESSSSTTGGGHHHHHHHHHHHHTS-GGGE
T ss_pred CcEEEEE--EEEEEcCCCccHHHHHHHHHHHHHHhCCCcceE
Confidence 5667766 566688999999999999999999999998775
No 49
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=39.59 E-value=1.5e+02 Score=29.00 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=33.6
Q ss_pred E-EEEEeCCCCCeeeccEEEEeEEEEEECCCCEEEEecCC
Q 016765 257 C-LGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (383)
Q Consensus 257 C-l~~~~~~~~~~ILG~~Flr~~yvvFD~~~~rIGfa~~~ 295 (383)
| +.++...+....||...||++--.-|++++++-++...
T Consensus 308 c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 308 CSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred cceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCC
Confidence 5 66666657778999999999999999999999998774
No 50
>PF13650 Asp_protease_2: Aspartyl protease
Probab=37.99 E-value=1.6e+02 Score=21.46 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=33.1
Q ss_pred ceeEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcCCCcceEeecC
Q 016765 23 CIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLG 81 (383)
Q Consensus 23 C~~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~~~~dGIlGLg 81 (383)
....+.-.+|........-+.+++++ .+..++.|-... .....+||||+-
T Consensus 40 ~~~~~~~~~g~~~~~~~~~~~i~ig~---~~~~~~~~~v~~------~~~~~~~iLG~d 89 (90)
T PF13650_consen 40 VPISVSGAGGSVTVYRGRVDSITIGG---ITLKNVPFLVVD------LGDPIDGILGMD 89 (90)
T ss_pred eeEEEEeCCCCEEEEEEEEEEEEECC---EEEEeEEEEEEC------CCCCCEEEeCCc
Confidence 34555555666656667778999988 455677766554 123578999974
No 51
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=34.64 E-value=60 Score=27.67 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=33.1
Q ss_pred ceEEEEEEEEEEeeecCCCCCcchhHHHHHHhhhcccCcCCC
Q 016765 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEV 383 (383)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
...++.| ++.+.....++.|+..+..+.||+-|+++..+|
T Consensus 87 g~~i~ni--D~tii~e~PKi~p~~~~m~~~ls~~L~~~~~~V 126 (153)
T cd00554 87 GYEIVNI--DITIIAERPKISPYREAMRANLAELLGIPPSRV 126 (153)
T ss_pred CCEEEEE--EEEEEecCCcchHHHHHHHHHHHHHhCCCCceE
Confidence 4566666 566777889999999999999999999987765
No 52
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=28.25 E-value=82 Score=27.07 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=33.5
Q ss_pred ceEEEEEEEEEEeeecCCCCCcchhHHHHHHhhhcccCcCCC
Q 016765 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEV 383 (383)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
..+|..| ++.+.....++.|+..+..+.||+-|+++.++|
T Consensus 90 g~~i~ni--D~tii~e~PKi~p~~~~m~~~la~~L~i~~~~V 129 (159)
T PRK00084 90 GYRIGNV--DITIIAQRPKMAPHIEEMRANIAEDLGIPLDDV 129 (159)
T ss_pred CCEEEEE--EEEEEcCCCcchHHHHHHHHHHHHHhCCCcceE
Confidence 4567766 566668999999999999999999999987764
No 53
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=26.69 E-value=88 Score=28.19 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=34.4
Q ss_pred ceEEEEEEEEEEeeecCCCCCcchhHHHHHHhhhcccCcCCC
Q 016765 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEV 383 (383)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
..+|+++ ++.+.....++.|+..+..+.||+-|+++.++|
T Consensus 147 G~~I~Nv--D~tII~q~PKi~p~~~~m~~~La~lL~i~~~~V 186 (216)
T PLN02862 147 GYEIGNL--DATLILQRPKLSPHKEAIRSNLSKLLGADPSVV 186 (216)
T ss_pred CCEEEEE--EEEEEcCCCcchHHHHHHHHHHHHHhCCCcceE
Confidence 5677777 566788899999999999999999999988765
No 54
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=26.27 E-value=1.3e+02 Score=24.31 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=31.9
Q ss_pred eEEEeCCCCeEEEEEEEEEEEeCCCCCCCCccEEEEeeEccCCCCcCCCcceEeecC
Q 016765 25 YERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLG 81 (383)
Q Consensus 25 ~~i~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~fG~~~~~s~~~~~~~~dGIlGLg 81 (383)
..+.=+.|......+.-|.+++|+ +...++++....... ..+|+||+.
T Consensus 55 ~~~~ta~G~~~~~~~~l~~l~iG~---~~~~nv~~~v~~~~~------~~~~LLGm~ 102 (121)
T TIGR02281 55 VTVSTANGQIKAARVTLDRVAIGG---IVVNDVDAMVAEGGA------LSESLLGMS 102 (121)
T ss_pred EEEEeCCCcEEEEEEEeCEEEECC---EEEeCcEEEEeCCCc------CCceEcCHH
Confidence 334445676555666889999999 577788876653221 137999985
No 55
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=25.74 E-value=1e+02 Score=26.37 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=33.2
Q ss_pred ceEEEEEEEEEEeeecCCCCCcchhHHHHHHhhhcccCcCCC
Q 016765 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEV 383 (383)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
..+|+.| ++.+.....++.|+..+..+.||+-|+++..+|
T Consensus 87 g~~i~ni--D~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V 126 (155)
T TIGR00151 87 GYRIGNV--DITIIAQRPKLLPHIPAMRENIAELLGIPLDSV 126 (155)
T ss_pred CCEEEEE--EEEEEcCCCcchHHHHHHHHHHHHHhCCCcceE
Confidence 5667777 455568899999999999999999999887664
No 56
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=25.07 E-value=1e+02 Score=21.33 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=17.6
Q ss_pred ceEEecccceeeeCHHHHHHH
Q 016765 165 GTVLDSGTTYAYLPGHAFAAF 185 (383)
Q Consensus 165 ~~ivDSGts~~~lP~~~~~~i 185 (383)
.+++|||.+...+..+.++..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 579999999999999887643
No 57
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=22.23 E-value=1.1e+02 Score=23.22 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=23.1
Q ss_pred EeeecCCC-CCcchhHHHHHHhhhcccCcCCC
Q 016765 353 SFSLNNSH-MKPNFTELSEFIAHELQVDDIEV 383 (383)
Q Consensus 353 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
.+-+.|.- -+|.-.|+.+-||..|++|.++|
T Consensus 2 ~~~v~h~g~~Tpsr~ei~~klA~~~~~~~~~i 33 (84)
T PF01282_consen 2 VFEVLHPGKPTPSRKEIREKLAAMLNVDPDLI 33 (84)
T ss_dssp EEEEE-SSSSS--HHHHHHHHHHHHTSTGCCE
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHhCCCCCeE
Confidence 45566666 78999999999999999988764
No 58
>PRK09784 hypothetical protein; Provisional
Probab=20.99 E-value=1.4e+02 Score=27.28 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=31.8
Q ss_pred EEeEEEECCEEeeeCCceecCCCceEEecccce-eeeCHHHHHHHHHHH
Q 016765 142 ELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTY-AYLPGHAFAAFKDAL 189 (383)
Q Consensus 142 ~l~~i~v~~~~~~~~~~~~~~~~~~ivDSGts~-~~lP~~~~~~i~~~i 189 (383)
++.+|+.|+++...+.. -..+.++.+|..| .|||++++++-.+.-
T Consensus 356 nvasislgnesfstd~d---leygylintGnhYdvYLpPELfaqAy~LN 401 (417)
T PRK09784 356 NVASISLGNESFSTDED---LEYGYLINTGNHYDVYLPPELFAQAYKLN 401 (417)
T ss_pred ceeeEEccCcccccccc---cceeeEEecCceeEEecCHHHHHHHHHhc
Confidence 46677788777654433 1346789998876 699999998766543
No 59
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=20.13 E-value=62 Score=24.11 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=13.7
Q ss_pred hHHHHHHhhhcccCcCCC
Q 016765 366 TELSEFIAHELQVDDIEV 383 (383)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~ 383 (383)
.+|.+|||+.|+|..++|
T Consensus 43 ~ali~~La~~l~v~ks~i 60 (77)
T PF02594_consen 43 KALIRFLAKALGVPKSDI 60 (77)
T ss_dssp HHHHHHHHHHCT--TTCE
T ss_pred HHHHHHHHHHhCCCcccE
Confidence 578899999999988875
Done!