BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016769
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+ + +D ++ +W+ RN G L + H V ++ S D+ + L+N +
Sbjct: 195 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 251
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
+ + + ++G + RPD + A+A D+ V+++N R G L L H ++
Sbjct: 252 ----GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 306
Query: 353 NAVSFSSDCKLMASASEDSTVALWELYPPH 382
V+FS D + +ASAS+D TV LW H
Sbjct: 307 WGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+ + +D ++ +W+ RN G L + H V ++ S D+ + L+N +
Sbjct: 154 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 210
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
+ + + + G + PD + A+A D+ V+++N R G L L H ++
Sbjct: 211 ----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 265
Query: 353 NAVSFSSDCKLMASASEDSTVALWE 377
N V+F D + +ASAS+D TV LW
Sbjct: 266 NGVAFRPDGQTIASASDDKTVKLWN 290
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+ + +D ++ +W+ RN G L + H V ++ S D+ + L+N +
Sbjct: 400 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN- 456
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
+ + + + G + PD + A+A D+ V+++N R G L L H ++
Sbjct: 457 ----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 511
Query: 353 NAVSFSSDCKLMASASEDSTVALWE 377
V+FS D + +ASAS+D TV LW
Sbjct: 512 RGVAFSPDGQTIASASDDKTVKLWN 536
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+ + +D ++ +W+ RN G L + H V ++ S D+ + L+N +
Sbjct: 359 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 415
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
+ + + + G + PD + A+A D+ V+++N R G L L H ++
Sbjct: 416 ----GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 470
Query: 353 NAVSFSSDCKLMASASEDSTVALWE 377
V+FS D + +ASAS+D TV LW
Sbjct: 471 RGVAFSPDGQTIASASDDKTVKLWN 495
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+ + +D ++ +W+ RN G L + H V ++ S D+ + L+N +
Sbjct: 31 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 87
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
+ + + + G + PD + A+A D+ V+++N R G L L H ++
Sbjct: 88 ----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 142
Query: 353 NAVSFSSDCKLMASASEDSTVALWE 377
V+FS D + +ASAS+D TV LW
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWN 167
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+ + +D ++ +W+ RN G L + H V ++ S D+ + L+N +
Sbjct: 277 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 333
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
G + + + + G + PD + A+A D+ V+++N R G L L H ++
Sbjct: 334 --GQHL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 388
Query: 353 NAVSFSSDCKLMASASEDSTVALWE 377
V+FS D + +ASAS+D TV LW
Sbjct: 389 RGVAFSPDGQTIASASDDKTVKLWN 413
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+ + +D ++ +W+ RN G L + H V ++ S D+ + L+N +
Sbjct: 441 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 497
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
+ + + + G + PD + A+A D+ V+++N R G L L H ++
Sbjct: 498 ----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 552
Query: 353 NAVSFSSDCKLMASASEDSTVALWE 377
V+FS D + +ASAS D TV LW
Sbjct: 553 WGVAFSPDGQTIASASSDKTVKLWN 577
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 299 IKKEINLE--RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVS 356
+K+ LE + G + PD + A+A D+ V+++N R G L L H ++ V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 64
Query: 357 FSSDCKLMASASEDSTVALWE 377
FS D + +ASAS+D TV LW
Sbjct: 65 FSPDGQTIASASDDKTVKLWN 85
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 117
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G+ L + H +PV + + + +S
Sbjct: 118 FNPQSNL----IVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 173 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 88 DDKTLKIWDV 97
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 210
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNMVY 265
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 266 IWNLQTKEIVQKLQ 279
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 117
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G+ L + H +PV + + + +S
Sbjct: 118 FNPQSNL----IVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 173 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC 229
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 88 DDKTLKIWDV 97
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S +
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFSPNGKYIL 211
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A N+ K ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 212 AATLDNDLK-LWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNMVY 265
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 266 IWNLQTKEIVQKLQ 279
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 120
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 121 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 176 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 91 DDKTLKIWDV 100
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 166 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 213
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 268
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 269 IWNLQTKEIVQKLQ 282
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 124
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 125 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+++G D S+ +WD++ G L + H +PV + + + +S D ++ D
Sbjct: 144 IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DT 200
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH--HA 350
++G C +K I+ + P +S P+ K A D +++++Y KG L H
Sbjct: 201 ASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 259
Query: 351 TCNAVSFS-SDCKLMASASEDSTVALWEL 378
C +FS + K + S SED+ V +W L
Sbjct: 260 YCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++ D
Sbjct: 102 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DV 158
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL-AILKYHHAT 351
TG C+ K + +S D + ++ +D RI++ G L ++ +
Sbjct: 159 KTGKCL--KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 352 CNAVSFSSDCKLMASASEDSTVALWE 377
+ V FS + K + +A+ D+T+ LW+
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 106
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 107 DDKTLKIWDV 116
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 182 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 229
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 284
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 285 IWNLQTKEIVQKLQ 298
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 139
Query: 73 SIGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 140 QSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 110
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 111 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 165
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 166 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 222
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 80
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 81 DDKTLKIWDV 90
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 156 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 203
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 258
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 259 IWNLQTKEIVQKLQ 272
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 114
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 115 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+++G D S+ +WD++ G L + H +PV + + + +S D ++ D
Sbjct: 146 IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DT 202
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH--HA 350
++G C +K I+ + P +S P+ K A D +++++Y KG L H
Sbjct: 203 ASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 261
Query: 351 TCNAVSFS-SDCKLMASASEDSTVALWEL 378
C +FS + K + S SED+ V +W L
Sbjct: 262 YCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+++ +D ++ +WD+ + G L +K H V C + + N +SG D+ + ++ D
Sbjct: 104 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--DV 160
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL-AILKYHHAT 351
TG C+ K + +S D + ++ +D RI++ G L ++ +
Sbjct: 161 KTGKCL--KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 352 CNAVSFSSDCKLMASASEDSTVALWE 377
+ V FS + K + +A+ D+T+ LW+
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 108
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 109 DDKTLKIWDV 118
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 184 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 231
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 232 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 286
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 287 IWNLQTKEIVQKLQ 300
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 141
Query: 73 SIGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 142 QSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 120
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 121 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 176 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 91 DDKTLKIWDV 100
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 166 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 213
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 268
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 269 IWNLQTKEIVQKLQ 282
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 124
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 125 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 131
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 132 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 186
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 187 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 243
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 101
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 102 DDKTLKIWDV 111
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 177 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 224
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 279
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 280 IWNLQTKEIVQKLQ 293
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 135
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 136 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 115
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 116 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 170
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 171 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 227
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 85
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 86 DDKTLKIWDV 95
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 161 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 208
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 263
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 264 IWNLQTKEIVQKLQ 277
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 119
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 120 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 113
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 114 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 168
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 169 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 83
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 84 DDKTLKIWDV 93
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 159 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 206
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 261
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 262 IWNLQTKEIVQKLQ 275
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 117
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 118 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 114
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 115 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 170 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 85 DDKTLKIWDV 94
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 160 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 207
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 262
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 263 IWNLQTKEIVQKLQ 276
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 118
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 119 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 119
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 120 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 174
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 175 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 231
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 89
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 90 DDKTLKIWDV 99
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 165 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 212
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 213 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 267
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 268 IWNLQTKEIVQKLQ 281
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 123
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 124 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 114
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 115 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 170 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 85 DDKTLKIWDV 94
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 160 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 207
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 262
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 263 IWNLQTKEIVQKLQ 276
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 118
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 119 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 120
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 121 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 176 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 91 DDKTLKIWDV 100
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 166 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 213
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 268
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 269 IWNLQTKEIVQKLQ 282
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 124
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 125 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 117
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 118 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 173 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 88 DDKTLKIWDV 97
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 210
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 265
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 266 IWNLQTKEIVQKLQ 279
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 117
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 118 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 173 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A++ D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 88 DDKTLKIWDV 97
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 210
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 265
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 266 IWNLQTKEIVQKLQ 279
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221
I DV + V+ ++IWD+++ +C + + KG +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLK------------TLKGHSNYVFCCN 117
Query: 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 281
+ P + +++G D S+ +WD++ G L + H +PV + + + +S
Sbjct: 118 FNPQSNL----IVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
D ++ D ++G C +K I+ + P +S P+ K A D +++++Y KG
Sbjct: 173 DGLCRIW--DTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 342 LAILKYH--HATCNAVSFS-SDCKLMASASEDSTVALWEL 378
L H C +FS + K + S SED+ V +W L
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S P+ + A + D+ ++I+ G + H + V++SSD L+ SAS
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 369 EDSTVALWEL 378
+D T+ +W++
Sbjct: 88 DDKTLKIWDV 97
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L+GH V F+ ++ +G+ +RIWD + + + HS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFCKLSLVKEPYA 124
S+ ++S DG + WD +G NP ++ F K S Y
Sbjct: 163 DGSL----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS-------FVKFS-PNGKYI 210
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A + ++ G+ + T + N + I + G K++ V+G + + V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKT----YTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVY 265
Query: 185 IWDLNTAERCTRLH 198
IW+L T E +L
Sbjct: 266 IWNLQTKEIVQKLQ 279
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ GH+ ++DV + +L + + L+IWD + + + HS + + P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNPQ 121
Query: 74 IGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHF 113
L ++S D +V+ WD++ G L + P+ + ++ HF
Sbjct: 122 SNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 16/182 (8%)
Query: 205 SPNFSSKGRGMCMAVQAYLPSKSQGFVN----VLAGYEDGSILVWDIRNPGIPLTAMKVH 260
+ N ++K + + M YL + S F N +L DG+ +WD+ + G L + H
Sbjct: 140 NENMAAKKKSVAMHTN-YLSACS--FTNSDMQILTASGDGTCALWDVES-GQLLQSFHGH 195
Query: 261 LEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318
VLCL + E+ N +SGG D+K +++ D +G CV + ++ P
Sbjct: 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVW--DMRSGQCV--QAFETHESDVNSVRYYPS 251
Query: 319 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA--VSFSSDCKLMASASEDSTVALW 376
A+ D R+Y+ R +AI A V FS +L+ + D T+ +W
Sbjct: 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
Query: 377 EL 378
++
Sbjct: 312 DV 313
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 257 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP--GISGTS 314
+K H VLC+ + +S D K+++++ S KE + P + +
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD------SFTTNKEHAVTMPCTWVMACA 113
Query: 315 IRPDSKIAATAGWDRRVRIY--NYRKGSALAILK----YHHATCNAVSFSSDCKLMASAS 368
P A G D + +Y + K +A K H +A SF++ + +AS
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 369 EDSTVALWEL 378
D T ALW++
Sbjct: 174 GDGTCALWDV 183
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Query: 230 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 289
F +++ ED +I VWD T +K H + V +S D S S AD I L+
Sbjct: 120 FSVMVSASEDATIKVWDYETGDFERT-LKGHTDSVQDISFDHSGKLLASCSADMTIKLW- 177
Query: 290 LDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH 349
D C+ + ++ +S SI P+ +A D+ ++++ + G + H
Sbjct: 178 -DFQGFECI--RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 350 ATCNAVSFSSDCKLMASASEDSTVALW 376
V + D L+AS S D TV +W
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 51/295 (17%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L+GH SV D+ F + +L + + +++WD + + +H H + SV+ P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVSIMPN 203
Query: 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133
+ ++S RD T+K W+++ G +KT + H + +V+ A+
Sbjct: 204 --GDHIVSASRDKTIKMWEVQTG-------YCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 134 DCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG-----------------PKYMAVA 176
D R V + + +E E I P P ++
Sbjct: 255 DQTVR-VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313
Query: 177 GEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 234
G + +++WD++T L H N G F S G+ +L
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKF------------------IL 354
Query: 235 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 289
+ +D ++ VWD +N + + H V L ++ ++G DQ + ++
Sbjct: 355 SCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 307 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMAS 366
R ++ P + +A D +++++Y G LK H + +SF KL+AS
Sbjct: 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 167
Query: 367 ASEDSTVALWEL 378
S D T+ LW+
Sbjct: 168 CSADMTIKLWDF 179
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 277 ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 336
+SG D+ I ++++ STG C++ + + G K + D+ +R+++Y
Sbjct: 312 LSGSRDKTIKMWDV--STGMCLMT--LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 337 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377
+ + L H ++ F + + S D TV +WE
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 256 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315
A+ H PV + + +S D I ++ D+ TG ++ + + S
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW--DYETGD--FERTLKGHTDSVQDISF 158
Query: 316 RPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 375
K+ A+ D +++++++ + + H ++VS + + SAS D T+ +
Sbjct: 159 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218
Query: 376 WEL 378
WE+
Sbjct: 219 WEV 221
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIW---------DTVQHRTVSS--SWVH 59
V GHR V V +Q ++ + + +R+W + +HR V SW
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 60 SAAHGIVSVATGPSIGLNK-----VISQGRDGTVKCWDIENG 96
+++ +S ATG + ++S RD T+K WD+ G
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 20/210 (9%)
Query: 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 232
+ V+ + + +W L ++ + Q G +F V+ + S F
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF----------VEDVVLSSDGQFA- 445
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
L+G DG + +WD+ G+ H + VL ++ +S D+ I L+N
Sbjct: 446 -LSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN--- 500
Query: 293 STGSC--VIKKEINLERPGISGTSIRPDS--KIAATAGWDRRVRIYNYRKGSALAILKYH 348
+ G C I + R +S P++ +A WD+ V+++N + L H
Sbjct: 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH 560
Query: 349 HATCNAVSFSSDCKLMASASEDSTVALWEL 378
+ V+ S D L AS +D V LW+L
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 257 MKVHLEPVLCLSID-ESCNGGISGGADQKIVLYNL---DHSTGSCVIKKEINLERPGISG 312
M+ H + V ++ ++ + +S D+ I+L+ L D + G V ++ + +
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--VAQRRLTGHSHFVED 435
Query: 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST 372
+ D + A + WD +R+++ G + H +V+FS D + + SAS D T
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 373 VALW 376
+ LW
Sbjct: 496 IKLW 499
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
L GH V DV +G+ GELR+WD VS+ ++SVA S
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAF--S 481
Query: 74 IGLNKVISQGRDGTVKCWD 92
+ +++S RD T+K W+
Sbjct: 482 LDNRQIVSASRDRTIKLWN 500
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 15 RGHRASVTDVCF--HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
GHR V+ V F + +P + + + +++W+ + S+ H+ V+V+
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 73 SIGLNKVISQGRDGTVKCWDIENG----GLSSNP---SLTIKTNSYHFC 114
S+ S G+DG V WD+ G L +N +L N Y C
Sbjct: 574 SL----CASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLC 618
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 30/217 (13%)
Query: 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 234
++G + V IW L E QN G P+ + G ++ A SQ +
Sbjct: 43 ISGSRDKTVMIWKLYEEE------QNGYFGIPHKALTGHNHFVSDLAL----SQENCFAI 92
Query: 235 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL---- 290
+ D ++ +WD+R G H V ++ +S GA+++I L+N+
Sbjct: 93 SSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
Query: 291 --------DHSTG-SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341
+HS SCV I S ++P + A+ GWD R++++N
Sbjct: 152 KFSSAEKENHSDWVSCVRYSPIMK-----SANKVQPFAPYFASVGWDGRLKVWN-TNFQI 205
Query: 342 LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378
K H + N +S S + K +A+ +D + +W++
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P L GH V+D+ Q + + LR+WD T H + + SVA
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE--VYSVA 125
Query: 70 TGPSIGLNKVISQGRDGTVKCWDI 93
P +++S G + +K W+I
Sbjct: 126 FSPDN--RQILSAGAEREIKLWNI 147
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 29/205 (14%)
Query: 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 234
V+G + + ++IWD NT E C R+ G +C+ + ++
Sbjct: 147 VSGLRDNTIKIWDKNTLE-CKRILTGHTGSV---------LCLQYDERV---------II 187
Query: 235 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHS 293
G D ++ VWD+ N G L + H E VL L + NG ++ D+ I ++++
Sbjct: 188 TGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASP 243
Query: 294 TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN 353
T +++ + R ++ D K +A DR ++++N + L H
Sbjct: 244 T-DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300
Query: 354 AVSFSSDCKLMASASEDSTVALWEL 378
+ + +L+ S S D+T+ LW++
Sbjct: 301 CLQYRD--RLVVSGSSDNTIRLWDI 323
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 264 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 323
V CL D+ +SG D I ++ D +T C K I G S ++ D ++
Sbjct: 136 VYCLQYDD--QKIVSGLRDNTIKIW--DKNTLEC---KRILTGHTG-SVLCLQYDERVII 187
Query: 324 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381
T D VR+++ G L L +H + F++ +M + S+D ++A+W++ P
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASP 243
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
VL GHRA+V V F + +G +++W+T V + ++ GI +
Sbjct: 251 VLVGHRAAVNVVDFDDKYIVSASGDR--TIKVWNTSTCEFVRT--LNGHKRGIACLQYRD 306
Query: 73 SIGLNKVISQGRDGTVKCWDIENGG 97
+ V+S D T++ WDIE G
Sbjct: 307 RL----VVSGSSDNTIRLWDIECGA 327
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 162 IDDVPAEGPKYMA-----VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC 216
+ + P K++A + G + +++ NT E+ + P++
Sbjct: 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-----PDYIR-----S 102
Query: 217 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNG 275
+AV P+K VL+G +D ++ +W+ N + H V+C++ + + +
Sbjct: 103 IAVH---PTKPY----VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 276 GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--DSKIAATAGWDRRVRI 333
SG D+ + +++L ST + + + G++ P D TA D ++I
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 334 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
++Y+ S +A L+ H + + F ++ S SED T+ +W
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR 51
VA L GH ++V+ FH T PI+ +G+ G L+IW++ ++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 37/232 (15%)
Query: 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124
I S+A P+ V+S D TVK W+ EN N +L + + + P
Sbjct: 100 IRSIAVHPTKPY--VLSGSDDLTVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKD 152
Query: 125 NAKQANEPKDCYEREV-----GETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ 179
+ A+ C +R V G++ +L +E R +D P YM A +
Sbjct: 153 PSTFAS---GCLDRTVKVWSLGQSTPNFTLTTGQE--RGVNYVDYYPLPDKPYMITASDD 207
Query: 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239
L+ ++IWD T SC + +G ++ + P+ +++G ED
Sbjct: 208 LT-IKIWDYQT---------KSCVAT----LEGHMSNVSFAVFHPTLPI----IISGSED 249
Query: 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNL 290
G++ +W+ + T + V LE C++ + I+ G D + +L
Sbjct: 250 GTLKIWNSSTYKVEKT-LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 162 IDDVPAEGPKYMA-----VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC 216
+ + P K++A + G + +++ NT E+ + P++
Sbjct: 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-----PDYIR-----S 102
Query: 217 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNG 275
+AV P+K VL+G +D ++ +W+ N + H V+C++ + + +
Sbjct: 103 IAVH---PTKPY----VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 276 GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--DSKIAATAGWDRRVRI 333
SG D+ + +++L ST + + + G++ P D TA D ++I
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 334 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
++Y+ S +A L+ H + + F ++ S SED T+ +W
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR 51
VA L GH ++V+ FH T PI+ +G+ G L+IW++ ++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 37/232 (15%)
Query: 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124
I S+A P+ V+S D TVK W+ EN N +L + + + P
Sbjct: 100 IRSIAVHPTKPY--VLSGSDDLTVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKD 152
Query: 125 NAKQANEPKDCYEREV-----GETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ 179
+ A+ C +R V G++ +L +E R +D P YM A +
Sbjct: 153 PSTFAS---GCLDRTVKVWSLGQSTPNFTLTTGQE--RGVNYVDYYPLPDKPYMITASDD 207
Query: 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239
L+ ++IWD T SC + +G ++ + P+ +++G ED
Sbjct: 208 LT-IKIWDYQT---------KSCVAT----LEGHMSNVSFAVFHPTLPI----IISGSED 249
Query: 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNL 290
G++ +W+ + T + V LE C++ + I+ G D + +L
Sbjct: 250 GTLKIWNSSTYKVEKT-LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 162 IDDVPAEGPKYMA-----VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC 216
+ + P K++A + G + +++ NT E+ + P++
Sbjct: 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-----PDYIR-----S 102
Query: 217 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNG 275
+AV P+K VL+G +D ++ +W+ N + H V+C++ + + +
Sbjct: 103 IAVH---PTKPY----VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 276 GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--DSKIAATAGWDRRVRI 333
SG D+ + +++L ST + + + G++ P D TA D ++I
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 334 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
++Y+ S +A L+ H + + F ++ S SED T+ +W
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR 51
VA L GH ++V+ FH T PI+ +G+ G L+IW++ ++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 40/198 (20%)
Query: 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY-HF--CKLSLVKEPYANAKQANEPKDC 135
V+S D TVK W+ EN N +L + HF C K+P A C
Sbjct: 112 VLSGSDDLTVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKDPSTFASG------C 160
Query: 136 YEREV-----GETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNT 190
+R V G++ +L +E R +D P YM A + L+ ++IWD T
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQE--RGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQT 217
Query: 191 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250
L +G ++ + P+ +++G EDG++ +W+
Sbjct: 218 KSCVATL-------------EGHMSNVSFAVFHPTLPI----IISGSEDGTLKIWNSSTY 260
Query: 251 GIPLTAMKVHLEPVLCLS 268
+ T + V LE C++
Sbjct: 261 KVEKT-LNVGLERSWCIA 277
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ V H + + H TKP + +G+ +++W+ + + ++ H ++ V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCV 146
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108
A P + S D TVK W + S P+ T+ T
Sbjct: 147 AFNPK-DPSTFASGCLDRTVKVWSLG----QSTPNFTLTT 181
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 162 IDDVPAEGPKYMA-----VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC 216
+ + P K++A + G + +++ NT E+ + P++
Sbjct: 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-----PDYIR-----S 102
Query: 217 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNG 275
+AV P+K VL+G +D ++ +W+ N + H V+C++ + + +
Sbjct: 103 IAVH---PTKPY----VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 276 GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--DSKIAATAGWDRRVRI 333
SG D+ + +++L ST + + + G++ P D TA D ++I
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 334 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
++Y+ S +A L+ H + + F ++ S SED T+ +W
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR 51
VA L GH ++V+ FH T PI+ +G+ G L+IW++ ++
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 40/198 (20%)
Query: 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY-HF--CKLSLVKEPYANAKQANEPKDC 135
V+S D TVK W+ EN N +L + HF C K+P A C
Sbjct: 112 VLSGSDDLTVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKDPSTFAS------GC 160
Query: 136 YEREV-----GETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNT 190
+R V G++ +L +E R +D P YM A + L+ ++IWD T
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQE--RGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQT 217
Query: 191 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250
SC + +G ++ + P+ +++G EDG++ +W+
Sbjct: 218 ---------KSCVATL----EGHMSNVSFAVFHPTLPI----IISGSEDGTLKIWNSSTY 260
Query: 251 GIPLTAMKVHLEPVLCLS 268
+ T + V LE C++
Sbjct: 261 KVEKT-LNVGLERSWCIA 277
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ V H + + H TKP + +G+ +++W+ + + ++ H ++ V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCV 146
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108
A P + S D TVK W + S P+ T+ T
Sbjct: 147 AFNPK-DPSTFASGCLDRTVKVWSLG----QSTPNFTLTT 181
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 277 ISGGADQKIVLYNLDH-STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 335
+S D+ I+++ L T + ++ + +S I D + A + WD +R+++
Sbjct: 32 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 91
Query: 336 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
G+ H +V+FSSD + + S S D T+ LW
Sbjct: 92 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 45/191 (23%)
Query: 233 VLAGYEDGSILVW----DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 288
+L+ D +I++W D N GIP A++ H V + I +SG D + L+
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 289 NLDHST---------------------------------------GSCVIKKEINLERPG 309
+L T G C +
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 150
Query: 310 ISGTSIRPDSK--IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA 367
+S P+S I + GWD+ V+++N H N V+ S D L AS
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 210
Query: 368 SEDSTVALWEL 378
+D LW+L
Sbjct: 211 GKDGQAMLWDL 221
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P LRGH V+DV +G+ G LR+WD T H+ ++SVA
Sbjct: 55 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--KDVLSVA 112
Query: 70 TGPSIGLNKVISQGRDGTVKCWD 92
S +++S RD T+K W+
Sbjct: 113 F--SSDNRQIVSGSRDKTIKLWN 133
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 91/242 (37%), Gaps = 42/242 (17%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPS 73
GH V V F + +G+ +++W+T V TV S + + V P+
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCVRFSPN 159
Query: 74 IGLNKVISQGRDGTVKCWDIENGGLSSN--------PSLTIKTNSYHFCKLSLVKEPYAN 125
++S G D VK W++ N L +N ++T+ + C S K+ A
Sbjct: 160 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCA-SGGKDGQAM 217
Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEI 185
NE K Y + G+ + ++LC S NR + A GP ++I
Sbjct: 218 LWDLNEGKHLYTLDGGDII--NALCFSP--NRYWL----CAATGP-----------SIKI 258
Query: 186 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245
WDL L Q S S C ++ ++ + AGY D + VW
Sbjct: 259 WDLEGKIIVDELKQEVISTS---SKAEPPQCTSLAWSADGQT-----LFAGYTDNLVRVW 310
Query: 246 DI 247
+
Sbjct: 311 QV 312
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 277 ISGGADQKIVLYNLDH-STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 335
+S D+ I+++ L T + ++ + +S I D + A + WD +R+++
Sbjct: 55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114
Query: 336 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
G+ H +V+FSSD + + S S D T+ LW
Sbjct: 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 45/191 (23%)
Query: 233 VLAGYEDGSILVW----DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 288
+L+ D +I++W D N GIP A++ H V + I +SG D + L+
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 289 NLDHST---------------------------------------GSCVIKKEINLERPG 309
+L T G C +
Sbjct: 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173
Query: 310 ISGTSIRPDSK--IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA 367
+S P+S I + GWD+ V+++N H N V+ S D L AS
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 368 SEDSTVALWEL 378
+D LW+L
Sbjct: 234 GKDGQAMLWDL 244
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P LRGH V+DV +G+ G LR+WD T H+ ++SVA
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--KDVLSVA 135
Query: 70 TGPSIGLNKVISQGRDGTVKCWD 92
S +++S RD T+K W+
Sbjct: 136 F--SSDNRQIVSGSRDKTIKLWN 156
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 91/242 (37%), Gaps = 42/242 (17%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPS 73
GH V V F + +G+ +++W+T V TV S + + V P+
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCVRFSPN 182
Query: 74 IGLNKVISQGRDGTVKCWDIENGGLSSN--------PSLTIKTNSYHFCKLSLVKEPYAN 125
++S G D VK W++ N L +N ++T+ + C S K+ A
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCA-SGGKDGQAM 240
Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEI 185
NE K Y + G+ + ++LC S NR + A GP ++I
Sbjct: 241 LWDLNEGKHLYTLDGGDII--NALCFSP--NRYWL----CAATGP-----------SIKI 281
Query: 186 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245
WDL L Q S S C ++ ++ + AGY D + VW
Sbjct: 282 WDLEGKIIVDELKQEVISTS---SKAEPPQCTSLAWSADGQT-----LFAGYTDNLVRVW 333
Query: 246 DI 247
+
Sbjct: 334 QV 335
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 28/213 (13%)
Query: 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ 220
+ DV AV+ + +W+L QN G + G +
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNL----------QN---GQCQYKFLGHTKDVLSV 115
Query: 221 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI--S 278
A+ P Q +++G D ++ VW+++ + + H + V C+ S + + S
Sbjct: 116 AFSPDNRQ----IVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 279 GGADQKIVLYNLDHSTGSCV--IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 336
GG D + +++L +TG V +K N ++ ++ PD + A++ D R+++
Sbjct: 172 GGWDNLVKVWDL--ATGRLVTDLKGHTNY----VTSVTVSPDGSLCASSDKDGVARLWDL 225
Query: 337 RKGSALAILKYHHATCNAVSFSSDCKLMASASE 369
KG AL+ + A N + FS + M +A+E
Sbjct: 226 TKGEALSEMA-AGAPINQICFSPNRYWMCAATE 257
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 254 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY--NLDHSTGSC---VIKKEINLERP 308
LT + + + C E+ +S D+ ++ + N D + C + + +
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
+S ++ + A +A WD +R++N + G H +V+FS D + + S
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 369 EDSTVALWEL 378
D+ + +W +
Sbjct: 129 RDNALRVWNV 138
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG-----IVSVAT 70
GH V V F + +G LR+W+ V +H+ + G + V
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWN------VKGECMHTLSRGAHTDWVSCVRF 160
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101
PS+ ++S G D VK WD+ G L ++
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTD 191
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P L GH A V+DV + + LR+W+ + H+ ++SVA
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT--KDVLSVA 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
P +++S GRD ++ W+++
Sbjct: 117 FSPDN--RQIVSGGRDNALRVWNVK 139
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90
P++ +G +++WD R V+ H+ + + SV P L S +DG +
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHT--NYVTSVTVSPDGSL--CASSDKDGVARL 222
Query: 91 WDIENG 96
WD+ G
Sbjct: 223 WDLTKG 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 15/159 (9%)
Query: 232 NVLA-GYEDGSILVWDIRNPGI------PLTAMKVHLEPVLCLSIDESC-NGGISGGADQ 283
NV+A G ED +++VW+I + G+ P+ ++ H + V ++ + N +S G D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDN 154
Query: 284 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 343
I+++ D TG+ V+ ++ I D + T+ D+RVR+ RKG+ +A
Sbjct: 155 VILVW--DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212
Query: 344 ILKYHHATCNAVS--FSSDCKLMA---SASEDSTVALWE 377
H V F S+ K++ S + VALW+
Sbjct: 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 15/159 (9%)
Query: 232 NVLA-GYEDGSILVWDIRNPGI------PLTAMKVHLEPVLCLSIDESC-NGGISGGADQ 283
NV+A G ED +++VW+I + G+ P+ ++ H + V ++ + N +S G D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154
Query: 284 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 343
I+++ D TG+ V+ ++ I D + T+ D+RVR+ RKG+ +A
Sbjct: 155 VILVW--DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212
Query: 344 ILKYHHATCNAVS--FSSDCKLMA---SASEDSTVALWE 377
H V F S+ K++ S + VALW+
Sbjct: 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 293
L+ D ++ +WD+ G H V+ + ID+ + ISG D+ I ++ +
Sbjct: 81 LSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--- 136
Query: 294 TGSCVIKKEINLERPGISGTSIRP------DSKIAATAGWDRRVRIYNYRKGSALAILKY 347
G C+ + +S + P DS +AG D+ V+ +N + A
Sbjct: 137 KGQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWELYPPHA 383
H++ N ++ S D L+ASA +D + LW L A
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 314 SIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373
++ D A +A WD+ +R+++ G H + +V ++ S S D T+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 374 ALWEL 378
+W +
Sbjct: 132 KVWTI 136
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI------DESCNGGISGGADQKIV 286
+++G D +I VW I+ G L + H + V + + D+ IS G D+ +
Sbjct: 122 IISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 287 LYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346
+NL+ I+ + I+ + PD + A+AG D + ++N A+ L
Sbjct: 180 AWNLNQ----FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 347 YHHATCNAVSFSSDCKLMASAS 368
+++FS + +A+A+
Sbjct: 236 AQDEVF-SLAFSPNRYWLAAAT 256
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100
S+ +IS RD T+K W I+ L++
Sbjct: 117 KKASM----IISGSRDKTIKVWTIKGQCLAT 143
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 293
L+ D ++ +WD+ G H V+ + ID+ + ISG D+ I ++ +
Sbjct: 75 LSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--- 130
Query: 294 TGSCVIKKEINLERPGISGTSIRP------DSKIAATAGWDRRVRIYNYRKGSALAILKY 347
G C+ + +S + P DS +AG D+ V+ +N + A
Sbjct: 131 KGQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 188
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWELYPPHA 383
H++ N ++ S D L+ASA +D + LW L A
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 224
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 314 SIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373
++ D A +A WD+ +R+++ G H + +V ++ S S D T+
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 374 ALWEL 378
+W +
Sbjct: 126 KVWTI 130
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI------DESCNGGISGGADQKIV 286
+++G D +I VW I+ G L + H + V + + D+ IS G D+ +
Sbjct: 116 IISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 173
Query: 287 LYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346
+NL+ I+ + I+ + PD + A+AG D + ++N A+ L
Sbjct: 174 AWNLNQ----FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 229
Query: 347 YHHATCNAVSFSSDCKLMASAS 368
+++FS + +A+A+
Sbjct: 230 AQDEVF-SLAFSPNRYWLAAAT 250
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100
S+ +IS RD T+K W I+ L++
Sbjct: 111 KKASM----IISGSRDKTIKVWTIKGQCLAT 137
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 293
L+ D ++ +WD+ G H V+ + ID+ + ISG D+ I ++ +
Sbjct: 81 LSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--- 136
Query: 294 TGSCVIKKEINLERPGISGTSIRP------DSKIAATAGWDRRVRIYNYRKGSALAILKY 347
G C+ + +S + P DS +AG D+ V+ +N + A
Sbjct: 137 KGQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWELYPPHA 383
H++ N ++ S D L+ASA +D + LW L A
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 314 SIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373
++ D A +A WD+ +R+++ G H + +V ++ S S D T+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 374 ALWEL 378
+W +
Sbjct: 132 KVWTI 136
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI------DESCNGGISGGADQKIV 286
+++G D +I VW I+ G L + H + V + + D+ IS G D+ +
Sbjct: 122 IISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 287 LYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346
+NL+ I+ + I+ + PD + A+AG D + ++N A+ L
Sbjct: 180 AWNLNQ----FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 347 YHHATCNAVSFSSDCKLMASAS 368
+++FS + +A+A+
Sbjct: 236 AQDEVF-SLAFSPNRYWLAAAT 256
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
S+ +IS RD T+K W I+
Sbjct: 117 KKASM----IISGSRDKTIKVWTIK 137
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 293
L+ D ++ +WD+ G H V+ + ID+ + ISG D+ I ++ +
Sbjct: 81 LSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--- 136
Query: 294 TGSCVIKKEINLERPGISGTSIRP------DSKIAATAGWDRRVRIYNYRKGSALAILKY 347
G C+ + +S + P DS +AG D+ V+ +N + A
Sbjct: 137 KGQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWELYPPHA 383
H++ N ++ S D L+ASA +D + LW L A
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 314 SIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373
++ D A +A WD+ +R+++ G H + +V ++ S S D T+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 374 ALWEL 378
+W +
Sbjct: 132 KVWTI 136
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI------DESCNGGISGGADQKIV 286
+++G D +I VW I+ G L + H + V + + D+ IS G D+ +
Sbjct: 122 IISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 287 LYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346
+NL+ I+ + I+ + PD + A+AG D + ++N A+ L
Sbjct: 180 AWNLNQ----FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 347 YHHATCNAVSFSSDCKLMASAS 368
+++FS + +A+A+
Sbjct: 236 AQDEVF-SLAFSPNRYWLAAAT 256
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
S+ +IS RD T+K W I+
Sbjct: 117 KKASM----IISGSRDKTIKVWTIK 137
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 293
L+ D ++ +WD+ G H V+ + ID+ + ISG D+ I ++ +
Sbjct: 81 LSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--- 136
Query: 294 TGSCVIKKEINLERPGISGTSIRP------DSKIAATAGWDRRVRIYNYRKGSALAILKY 347
G C+ + +S + P DS +AG D+ V+ +N + A
Sbjct: 137 KGQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWELYPPHA 383
H++ N ++ S D L+ASA +D + LW L A
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 314 SIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373
++ D A +A WD+ +R+++ G H + +V ++ S S D T+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 374 ALWEL 378
+W +
Sbjct: 132 KVWTI 136
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI------DESCNGGISGGADQKIV 286
+++G D +I VW I+ G L + H + V + + D+ IS G D+ +
Sbjct: 122 IISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 287 LYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346
+NL+ I+ + I+ + PD + A+AG D + ++N A+ L
Sbjct: 180 AWNLNQ----FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 347 YHHATCNAVSFSSDCKLMASAS 368
+++FS + +A+A+
Sbjct: 236 AQDEVF-SLAFSPNRYWLAAAT 256
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
S+ +IS RD T+K W I+
Sbjct: 117 KKASM----IISGSRDKTIKVWTIK 137
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 293
L+ D ++ +WD+ G H V + ID+ + ISG D+ I ++ +
Sbjct: 81 LSASWDKTLRLWDVAT-GETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI--- 136
Query: 294 TGSCVIKKEINLERPGISGTSIRP------DSKIAATAGWDRRVRIYNYRKGSALAILKY 347
G C+ + +S + P DS +AG D+ V+ +N + A
Sbjct: 137 KGQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIG 194
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWELYPPHA 383
H++ N ++ S D L+ASA +D + LW L A
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKA 230
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 314 SIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373
++ D A +A WD+ +R+++ G H + +V + S S D T+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 374 ALWEL 378
+W +
Sbjct: 132 KVWTI 136
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
PV +GH V D + + LR+WD T H + V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIE 94
S +IS RD T+K W I+
Sbjct: 117 KKAS----XIISGSRDKTIKVWTIK 137
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-----VLCLSIDESCNGGISGGADQKIVL 287
+L+ +DG +++WD T KVH P V+ + S N GG D +
Sbjct: 70 LLSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 288 YNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY 347
YNL G+ + +E+ +S D++I ++G D +++ G
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG 182
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWEL 378
H ++S + D +L S + D++ LW++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Query: 1 MSKRPPPPDPVA--------VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52
+S+ DPV LRGH A + + + +L + + G+L IWD+
Sbjct: 30 LSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK 89
Query: 53 V-----SSSWVHSAAHGIVS--VATGPSIGLNKVIS----QGRDGTVK 89
V SSWV + A+ VA G GL+ + S + R+G V+
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACG---GLDNICSIYNLKTREGNVR 134
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 345 LKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382
L+ H A A+ + +D +L+ SAS+D + +W+ Y +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN 88
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-----VLCLSIDESCNGGISGGADQKIVL 287
+L+ +DG +++WD T KVH P V+ + S N GG D +
Sbjct: 70 LLSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 288 YNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY 347
YNL G+ + +E+ +S D++I ++G D +++ G
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG 182
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWEL 378
H ++S + D +L S + D++ LW++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 1 MSKRPPPPDPVA--------VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52
+S+ DPV LRGH A + + + +L + + G+L IWD+
Sbjct: 30 LSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK 89
Query: 53 V-----SSSWVHSAAHG 64
V SSWV + A+
Sbjct: 90 VHAIPLRSSWVMTCAYA 106
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 345 LKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382
L+ H A A+ + +D +L+ SAS+D + +W+ Y +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN 88
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
P L GH ++ + F+ T +L + + G LRIW + + + HS S+
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-----SIV 293
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGL 98
+ +G +KVIS DG+V+ W ++ L
Sbjct: 294 SASWVGDDKVISCSMDGSVRLWSLKQNTL 322
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 24/160 (15%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
++ G E+G + +W+ G L + H P++ + ++ IS + +L+N+
Sbjct: 123 IVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180
Query: 293 STGSCVIKKEINLERPGISGTSIRP-----DSKIAATAGW---DRRV--------RIYNY 336
T + + L+ G G+SI D + W D+ V +Y
Sbjct: 181 GT----VMQHFELKETG--GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQI 234
Query: 337 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
+ + L HH + + F+ KL+ SAS+D T+ +W
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310
G L +K H + VLC + + + AD+K+ ++ D +TG V + + E+
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHTYDEHSEQVNC 711
Query: 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 370
+ + + + AT D +++++ + + H + N FS D +L+AS S D
Sbjct: 712 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 771
Query: 371 STVALWEL 378
T+ LW++
Sbjct: 772 GTLRLWDV 779
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 318 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377
D + A+ G D+ ++++ G L +K H +FSSD +A+ S D V +W+
Sbjct: 633 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 239 DGSILVWDIR--NPGIPLTAMKVHLE----PVLCLSIDESCNGGISG-----GADQKIVL 287
DG++ +WD+R N + + L P I + C+ G A K++L
Sbjct: 771 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 830
Query: 288 YNLDHSTGSCVIKKEINL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346
+++ H++G + EI+ I P +A A V ++N +A +
Sbjct: 831 FDI-HTSG---LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR 886
Query: 347 YHHATCNAVSFSSDCKLMASASEDSTVALWE 377
H + + V FS D +AS+D T+ +WE
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
V G EDG+I + ++ N + + + H + V + IS D I ++N
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVG-HKKAVRHIQFTADGKTLISSSEDSVIQVWNW-- 1039
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
TG V + + + + DS++ + + +D V+++N G H T
Sbjct: 1040 QTGDYVF---LQAHQETVKDFRLLQDSRLLSWS-FDGTVKVWNVITGRIERDFTCHQGTV 1095
Query: 353 NAVSFSSDCKLMASASEDSTVALWE---LYPPH 382
+ + SSD +S S D T +W L P H
Sbjct: 1096 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1128
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+++ ED I VW+ + ++ H E V + + + +S D + ++N+
Sbjct: 1025 LISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNV-- 1079
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
TG I+++ + + +I D+ ++ D+ +I+++ S L LK H+
Sbjct: 1080 ITGR--IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1137
Query: 353 NAVSFSSDCKLMASASEDSTVALWEL 378
+FS D L+A+ ++ + +W +
Sbjct: 1138 RCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-----AAHG 64
P+ L+GH V F +L G GE+RIW+ + + S S A HG
Sbjct: 1126 PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG 1185
Query: 65 --IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
+ V P ++S G G +K W++ G + S T TN + K+
Sbjct: 1186 GWVTDVCFSPDS--KTLVSAG--GYLKWWNVATG----DSSQTFYTNGTNLKKI 1231
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310
G L +K H + VLC + + + AD+K+ ++ D +TG V + + E+
Sbjct: 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHTYDEHSEQVNC 704
Query: 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 370
+ + + + AT D +++++ + + H + N FS D +L+AS S D
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764
Query: 371 STVALWEL 378
T+ LW++
Sbjct: 765 GTLRLWDV 772
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 318 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377
D + A+ G D+ ++++ G L +K H +FSSD +A+ S D V +W+
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 239 DGSILVWDIR--NPGIPLTAMKVHLE----PVLCLSIDESCNGGISG-----GADQKIVL 287
DG++ +WD+R N + + L P I + C+ G A K++L
Sbjct: 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL 823
Query: 288 YNLDHSTGSCVIKKEINL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346
+++ H++G + EI+ I P +A A V ++N +A +
Sbjct: 824 FDI-HTSG---LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR 879
Query: 347 YHHATCNAVSFSSDCKLMASASEDSTVALWE 377
H + + V FS D +AS+D T+ +WE
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+++ ED I VW+ + ++ H E V + + + +S D + ++N+
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNV-- 1072
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
TG I+++ + + +I D+ ++ D+ +I+++ S L LK H+
Sbjct: 1073 ITGR--IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1130
Query: 353 NAVSFSSDCKLMASASEDSTVALWEL 378
+FS D L+A+ ++ + +W +
Sbjct: 1131 RCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
V G EDG+I + ++ N + + + H + V + IS D I ++N
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVG-HKKAVRHIQFTADGKTLISSSEDSVIQVWNW-- 1032
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
TG V + + + + DS++ + + +D V+++N G H T
Sbjct: 1033 QTGDYVF---LQAHQETVKDFRLLQDSRLLSWS-FDGTVKVWNVITGRIERDFTCHQGTV 1088
Query: 353 NAVSFSSDCKLMASASEDSTVALWE---LYPPH 382
+ + SSD +S S D T +W L P H
Sbjct: 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-----AAHG 64
P+ L+GH V F +L G GE+RIW+ + + S S A HG
Sbjct: 1119 PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG 1178
Query: 65 --IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
+ V P ++S G G +K W++ G + S T TN + K+
Sbjct: 1179 GWVTDVCFSPDS--KTLVSAG--GYLKWWNVATG----DSSQTFYTNGTNLKKI 1224
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/321 (19%), Positives = 118/321 (36%), Gaps = 60/321 (18%)
Query: 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80
+ VCF L G +RIWD + V H I S+ PS +K++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFPS--GDKLV 181
Query: 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV 140
S D TV+ WD+ G S S+ + +S Y A + ++ E
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTT---VAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 141 G---ETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 197
G E +D+++ + + + ++ +G V+G V++W+L A +
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVV--FTRDGQS--VVSGSLDRSVKLWNLQNANNKSDS 294
Query: 198 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 257
+ G + ++V + +Q +L+G +D +L WD + G PL +
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSV-----ATTQNDEYILSGSKDRGVLFWD-KKSGNPLLML 348
Query: 258 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317
+ H V+ +++ +G+S+ P
Sbjct: 349 QGHRNSVISVAV----------------------------------------ANGSSLGP 368
Query: 318 DSKIAATAGWDRRVRIYNYRK 338
+ + AT D + RI+ Y+K
Sbjct: 369 EYNVFATGSGDCKARIWKYKK 389
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
V +L+GH + + + + L +G+ +RIWD RT S S G+ +VA
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL---RTGQCSLTLSIEDGVTTVAV 214
Query: 71 GPSIGLNKVISQGR-DGTVKCWDIENGGL 98
P G K I+ G D V+ WD E G L
Sbjct: 215 SPGDG--KYIAAGSLDRAVRVWDSETGFL 241
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE 369
I PD K AT DR +RI++ + IL+ H ++ + + S S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 370 DSTVALWEL 378
D TV +W+L
Sbjct: 186 DRTVRIWDL 194
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 6 PPPDP--VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
P +P V VLRGH ASV V H I+ +G+ L +WD Q + + + H
Sbjct: 256 PEENPYFVGVLRGHMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYIL----SGH 309
Query: 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
+T + IS D T++ WD+ENG L
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 255 TAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG- 312
T ++ H+ V+ CL ++ N I+G D+ I +Y+ I K+ L+ G G
Sbjct: 115 TTLRGHMTSVITCLQFED--NYVITGADDKMIRVYD--------SINKKFLLQLSGHDGG 164
Query: 313 --TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT--CNAVSFSSDCKLMASAS 368
I + DR VR+++ +KG + + H++T C + + K + + S
Sbjct: 165 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 369 EDSTVALWEL 378
D+T+ +W+L
Sbjct: 225 RDNTLHVWKL 234
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------SSSWVHSAAHGIV 66
LRGH SV C + G +R++D++ + + W AHG +
Sbjct: 117 LRGHMTSVI-TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 67 SVATGPSIGLNKVISQGRDGTVKCWDIENG 96
++S D TV+ WDI+ G
Sbjct: 176 ------------LVSGSTDRTVRVWDIKKG 193
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 20/165 (12%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG--ISGGADQKIVLYNL 290
+++G D ++ VWDI+ G + H V CL I E N ++G D + ++ L
Sbjct: 176 LVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 291 -----------DHSTGSCVIKKEINLERPGI------SGTSIRPDSKIAATAGWDRRVRI 333
+H E N G+ S ++ I + +D + +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 334 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378
++ + L IL H + + + K SAS D+T+ +W+L
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 19/148 (12%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ +L GH + + + + + +RIWD + + H+A G++ ++
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD 362
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN----A 126
++S DG+++ WD + + SYH LS + Y +
Sbjct: 363 ------KFLVSAAADGSIRGWDANDYS---------RKFSYHHTNLSAITTFYVSDNILV 407
Query: 127 KQANEPKDCYEREVGETVDTDSLCDSKE 154
+ + Y G+ V + L D+ +
Sbjct: 408 SGSENQFNIYNLRSGKLVHANILKDADQ 435
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 300 KKEINLERPG--ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSF 357
KKE +L+ G I + PD K A+ D + I++ G L L+ H +++F
Sbjct: 155 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214
Query: 358 SSDCKLMASASEDSTVALWEL 378
S D +L+ +AS+D + ++++
Sbjct: 215 SPDSQLLVTASDDGYIKIYDV 235
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 6 PPPDP--VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
P +P V VLRGH ASV V H I+ +G+ L +WD Q + + + H
Sbjct: 256 PEENPYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYIL----SGH 309
Query: 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
+T + IS D T++ WD+ENG L
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL 344
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 255 TAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG- 312
T ++ H V+ CL ++ N I+G D+ I +Y+ I K+ L+ G G
Sbjct: 115 TTLRGHXTSVITCLQFED--NYVITGADDKXIRVYD--------SINKKFLLQLSGHDGG 164
Query: 313 --TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT--CNAVSFSSDCKLMASAS 368
I + DR VR+++ +KG + + H++T C + + K + + S
Sbjct: 165 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 369 EDSTVALWEL 378
D+T+ +W+L
Sbjct: 225 RDNTLHVWKL 234
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------SSSWVHSAAHGIV 66
LRGH SV C + G +R++D++ + + W AHG +
Sbjct: 117 LRGHXTSVI-TCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 67 SVATGPSIGLNKVISQGRDGTVKCWDIENG 96
++S D TV+ WDI+ G
Sbjct: 176 ------------LVSGSTDRTVRVWDIKKG 193
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 20/165 (12%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG--ISGGADQKIVLYNL 290
+++G D ++ VWDI+ G + H V CL I E N ++G D + ++ L
Sbjct: 176 LVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 291 -----------DHSTGSCVIKKEINLERPGI---SGTSIRPDS---KIAATAGWDRRVRI 333
+H E N G+ S+R S I + +D + +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 334 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378
++ + L IL H + + + K SAS D+T+ +W+L
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 19/148 (12%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ +L GH + + + + + +RIWD + H+A G++ ++
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD 362
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN----A 126
++S DG+++ WD + + SYH LS + Y +
Sbjct: 363 ------KFLVSAAADGSIRGWDANDYS---------RKFSYHHTNLSAITTFYVSDNILV 407
Query: 127 KQANEPKDCYEREVGETVDTDSLCDSKE 154
+ + Y G+ V + L D+ +
Sbjct: 408 SGSENQFNIYNLRSGKLVHANILKDADQ 435
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-----VLCLSIDESCNGGISGGADQKIVL 287
+++ +DG +++WD T KVH P V+ + S N GG D +
Sbjct: 70 LVSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 288 YNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY 347
YNL G+ + +E+ +S D++I ++G D +++ G
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG 182
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWEL 378
H ++S + D +L S + D++ LW++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 345 LKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382
L+ H A A+ + +D +L+ SAS+D + +W+ Y +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN 88
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 1 MSKRPPPPDPVA--------VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52
+S+ DPV LRGH A + + + +L + + G+L IWD+
Sbjct: 30 LSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK 89
Query: 53 V-----SSSWVHSAAHG 64
V SSWV + A+
Sbjct: 90 VHAIPLRSSWVMTCAYA 106
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-----VLCLSIDESCNGGISGGADQKIVL 287
+++ +DG +++WD T KVH P V+ + S N GG D +
Sbjct: 81 LVSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 134
Query: 288 YNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY 347
YNL G+ + +E+ +S D++I ++G D +++ G
Sbjct: 135 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG 193
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWEL 378
H ++S + D +L S + D++ LW++
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 345 LKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382
L+ H A A+ + +D +L+ SAS+D + +W+ Y +
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN 99
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 1 MSKRPPPPDPVA--------VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52
+S+ DPV LRGH A + + + +L + + G+L IWD+
Sbjct: 41 LSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK 100
Query: 53 V-----SSSWVHSAAH 63
V SSWV + A+
Sbjct: 101 VHAIPLRSSWVMTCAY 116
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-----VLCLSIDESCNGGISGGADQKIVL 287
+++ +DG +++WD T KVH P V+ + S N GG D +
Sbjct: 70 LVSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 288 YNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY 347
YNL G+ + +E+ +S D++I ++G D +++ G
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG 182
Query: 348 HHATCNAVSFSSDCKLMASASEDSTVALWEL 378
H ++S + D +L S + D++ LW++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 345 LKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382
L+ H A A+ + +D +L+ SAS+D + +W+ Y +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN 88
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 1 MSKRPPPPDPVA--------VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52
+S+ DPV LRGH A + + + +L + + G+L IWD+
Sbjct: 30 LSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK 89
Query: 53 V-----SSSWVHSAAHG 64
V SSWV + A+
Sbjct: 90 VHAIPLRSSWVMTCAYA 106
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 254 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 313
+ ++K++ E + S D S +G D+KI L ++ + + + + + I
Sbjct: 7 IKSLKLYKEKIW--SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV 64
Query: 314 SIRPDSKIAATAGWDRRVRIYNYRKGS-------ALAILKYHHATCNAVSFSSDCKLMAS 366
+ RP + + A +D V I+ + + LAI++ H V++S+D +A+
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 367 ASEDSTVALWE 377
S D +V +WE
Sbjct: 125 CSRDKSVWIWE 135
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
V++G D ++ VWDI G L + H+ V C+ D +SG D + ++ D
Sbjct: 212 VVSGSRDATLRVWDI-ETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVW--DP 266
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
T +C+ + + R S++ D + D +R+++ G+ + L H +
Sbjct: 267 ETETCLHTLQGHTNRV----YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 322
Query: 353 NAVSFSSDCKLMASASEDSTVALWEL 378
+ + + ++ S + DSTV +W++
Sbjct: 323 SGMELKDN--ILVSGNADSTVKIWDI 346
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 33/208 (15%)
Query: 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 233
V+G + + + +WD+ T + C + GR V
Sbjct: 212 VVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQYDGR------------------RV 252
Query: 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 293
++G D + VWD L ++ H V L D +SG D I +++++
Sbjct: 253 VSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVE-- 307
Query: 294 TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK---YHHA 350
TG+C+ + + SG ++ + ++ A D V+I++ + G L L+ H +
Sbjct: 308 TGNCI--HTLTGHQSLTSGMELKDNILVSGNA--DSTVKIWDIKTGQCLQTLQGPNKHQS 363
Query: 351 TCNAVSFSSDCKLMASASEDSTVALWEL 378
+ F+ + + ++S+D TV LW+L
Sbjct: 364 AVTCLQFNKN--FVITSSDDGTVKLWDL 389
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 95/239 (39%), Gaps = 41/239 (17%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
+ L GH ++V C H + + +G+ LR+WD + + H AA V
Sbjct: 192 IHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 249
Query: 71 GPSIGLNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129
+V+S D VK WD E L + T + S F + +V + +
Sbjct: 250 ------RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV 303
Query: 130 NEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLN 189
++ E G + T L + E+ D++ V+G S V+IWD+
Sbjct: 304 ------WDVETGNCIHT--LTGHQSLTSGMELKDNI--------LVSGNADSTVKIWDIK 347
Query: 190 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248
T + C + Q PN K + +Q ++ F V+ +DG++ +WD++
Sbjct: 348 TGQ-CLQTLQ-----GPN---KHQSAVTCLQF-----NKNF--VITSSDDGTVKLWDLK 390
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 115/304 (37%), Gaps = 58/304 (19%)
Query: 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91
I+ +G+T L++W+ + + + H+ S + +V+S RD T++ W
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHT------STVRCMHLHEKRVVSGSRDATLRVW 224
Query: 92 DIENGG-LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP--KDCYEREVGETVDTDS 148
DIE G L + +V Y + +P + C G T
Sbjct: 225 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----- 279
Query: 149 LCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF 208
NR + + D V+G + + +WD+ T C ++ G +
Sbjct: 280 -------NRVYSLQFD------GIHVVSGSLDTSIRVWDVETGN-CI----HTLTGHQSL 321
Query: 209 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPVL 265
+S GM + +++G D ++ +WDI+ G L ++ H V
Sbjct: 322 TS---GMELKDNI-----------LVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVT 366
Query: 266 CLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR---PDSKIA 322
CL ++ N I+ D + L++L TG I+ + LE G G R ++K+
Sbjct: 367 CLQFNK--NFVITSSDDGTVKLWDL--KTGE-FIRNLVTLESGGSGGVVWRIRASNTKLV 421
Query: 323 ATAG 326
G
Sbjct: 422 CAVG 425
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSID---ESCN------GGISGGADQKIVLYNL 290
G + VWDI +PG K + + CL+ D SC I GG + +++L
Sbjct: 72 GCVKVWDISHPG-----NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126
Query: 291 DHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA 350
T IK E+ P +I PDSK+ + D + +++ + + + H
Sbjct: 127 AAPTPR--IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184
Query: 351 TCNAVSFSSDCKLMASASEDSTVALWEL 378
+ + S+D + + D+TV W+L
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDL 212
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV-LCLSIDESCNGGISGGADQKIVLYNLD 291
++ G E ++ +WD+ P + A P L+I S +D I +++L
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 292 HSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 342
+ T + ++ G S I D T G D VR ++ R+G L
Sbjct: 172 NQT----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91
+ F+ + G + +WD V H+ + ++ + K+ + G D TV+ W
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT----KLWTGGLDNTVRSW 210
Query: 92 DIENGGLSSNPSLTIKTNSYHFC 114
D+ G T + S +C
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYC 233
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Query: 250 PGIPLTAMKV----HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL 305
PGIP A ++ H E V ++I +GG + ++++ H + + L
Sbjct: 36 PGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCL 94
Query: 306 ERPG-ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL--AILKYHHATCNAVSFSSDCK 362
R I + PD G + I++ + A L C A++ S D K
Sbjct: 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154
Query: 363 LMASASEDSTVALWELY 379
+ S D +A+W+L+
Sbjct: 155 VCFSCCSDGNIAVWDLH 171
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 185 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244
IWDL + L S PN G ++V + P S D SIL+
Sbjct: 192 IWDLKAKKEVIHLSYTS----PN---SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244
Query: 245 WDIRNPGIPLTAM-KVHLEPVLCLSI---DESCNGGISGGADQKIVLYN 289
WD+RN PL + + H + +L L DE +S G D ++L+N
Sbjct: 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL--LLSSGRDNTVLLWN 291
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310
G L +K H + VLC + + D+K+ ++N TG V + + E+
Sbjct: 653 GEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN--SMTGELVHTYDEHSEQVNC 710
Query: 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 370
+ + AT D +++++ + + H + N FS D KL+AS S D
Sbjct: 711 CHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSAD 770
Query: 371 STVALWE 377
T+ LW+
Sbjct: 771 GTLKLWD 777
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 43/212 (20%)
Query: 183 VEIWDLNTAE-RCTRL-HQNS---CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 237
+++WDLN E R T H NS C SP+ K C A
Sbjct: 731 LKLWDLNQKECRNTMFGHTNSVNHCRFSPD--DKLLASCSA------------------- 769
Query: 238 EDGSILVWDI----RNPGIPLTAMKVHLE------PVLCLSIDESCNGG-ISGGADQKIV 286
DG++ +WD I + ++LE V+ S +G I A KI
Sbjct: 770 -DGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIF 828
Query: 287 LYNLDHSTGSCVIKKEINL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL 345
L+++ H++G + EI+ I P + +A A V ++N S +A
Sbjct: 829 LFDI-HTSG---LLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADC 884
Query: 346 KYHHATCNAVSFSSDCKLMASASEDSTVALWE 377
+ H + + V FS D ++S+D T+ LWE
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 318 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
D + A+ G D+ ++++ G L +K H +FS+D + +A+ S D V +W
Sbjct: 632 DGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT----VQHRTVSSSWVHSAAHG- 64
P+ LRGH V F +L G GE+RIW+ + H S +A HG
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGG 1184
Query: 65 -IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
+ + P + +IS G G +K W++ G S T TN + K+
Sbjct: 1185 WVTDLCFSPDGKM--LISAG--GYIKWWNVVTG----ESSQTFYTNGTNLKKI 1229
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 6/147 (4%)
Query: 239 DGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG-S 296
D + +W +T ++ H V ++ S N + D+ + ++ +D
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 297 CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL--AILKYHHATCNA 354
CV +N + P ++ A+A +D V++Y + + A L+ H +T +
Sbjct: 142 CV--SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 355 VSFSSDCKLMASASEDSTVALWELYPP 381
++F + +AS S+D TV +W Y P
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIWRQYLP 226
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 317 PDSKIAATAGWDRRVRIYNYRKGSAL---AILKYHHATCNAVSFSSDCKLMASASEDSTV 373
P + A+ G DRR+RI+ S + + + H T V++S +ASAS D+T
Sbjct: 26 PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85
Query: 374 ALWE 377
+W+
Sbjct: 86 CIWK 89
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 316 RPDSKIAATAGWDRRVRIYNYRKGSALAILK-------YHHATCNAVSFSSDCKLMASAS 368
PD + A+ G D + +YN G+ + + H + +++S D +ASAS
Sbjct: 199 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258
Query: 369 EDSTVALWEL 378
D T+ +W +
Sbjct: 259 ADKTIKIWNV 268
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 204 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL---TAMKVH 260
G+ N + G+ M + PS+ +++G +D ++ +++ G P + H
Sbjct: 137 GTSNGNLTGQARAMNSVDFKPSRP---FRIISGSDDNTVAIFE----GPPFKFKSTFGEH 189
Query: 261 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI--NLERPG-ISGTSIRP 317
+ V + + + S G D IVLYN T + V + + N+ G + G + P
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 318 DSKIAATAGWDRRVRIYN 335
D A+A D+ ++I+N
Sbjct: 250 DGTKIASASADKTIKIWN 267
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 298 VIKKEINLERP-------GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA 350
V+ NL+R I+ P + ++ D +++I++ + GS L H A
Sbjct: 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA 182
Query: 351 TCNAVSFSSDCKLMASASEDSTVALWE 377
T ++ + + SAS D T+ LWE
Sbjct: 183 TVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 233 VLAGYEDGSILVWDIRNPGIPL 254
+ AGYE+G + WD+R+P P+
Sbjct: 306 IYAGYENGMLAQWDLRSPECPV 327
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 298 VIKKEINLERP-------GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA 350
V+ NL+R I+ P + ++ D +++I++ + GS L H A
Sbjct: 120 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA 179
Query: 351 TCNAVSFSSDCKLMASASEDSTVALWE 377
T ++ + + SAS D T+ LWE
Sbjct: 180 TVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 233 VLAGYEDGSILVWDIRNPGIPL 254
+ AGYE+G + WD+R+P P+
Sbjct: 303 IYAGYENGMLAQWDLRSPECPV 324
>pdb|3T5Q|A Chain A, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|B Chain B, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|E Chain E, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|G Chain G, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|I Chain I, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|K Chain K, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
Length = 353
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 75 GLNKVISQGRDGTVKCWDIENGGLSSN-----PSLTI 106
G N+ GRDG V+ WD++N L SN PSLT+
Sbjct: 161 GGNQGARAGRDGVVRVWDVKNAELLSNQFGTMPSLTL 197
>pdb|3T5N|A Chain A, 1.8a Crystal Structure Of Lassa Virus Nucleoprotein In
Complex With Ssrna
Length = 354
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 75 GLNKVISQGRDGTVKCWDIENGGLSSN-----PSLTI 106
G N+ GRDG V+ WD++N L SN PSLT+
Sbjct: 162 GGNQGARAGRDGVVRVWDVKNAELLSNQFGTMPSLTL 198
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 23/186 (12%)
Query: 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 230
Y+AV G +EV++WD+ +R + +S R ++ +Y+ S
Sbjct: 80 NYLAV-GTSSAEVQLWDVQQQKRLRNMTSHS----------ARVGSLSWNSYILS----- 123
Query: 231 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 290
+G G I D+R + + H + V L SGG D + ++
Sbjct: 124 ----SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 291 DHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGW--DRRVRIYNYRKGSALAILKY 347
G V + + + + P S + AT G DR +RI+N G+ L+ +
Sbjct: 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239
Query: 348 HHATCN 353
H C+
Sbjct: 240 HSQVCS 245
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 330 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379
++ I+ Y + +A LK H + +++ S D +ASA+ D T+ LW +
Sbjct: 265 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 23/185 (12%)
Query: 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 231
Y+AV G +EV++WD+ +R + +S R ++ +Y+ S
Sbjct: 161 YLAV-GTSSAEVQLWDVQQQKRLRNMTSHSA----------RVGSLSWNSYILS------ 203
Query: 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 291
+G G I D+R + + H + V L SGG D + ++
Sbjct: 204 ---SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260
Query: 292 HSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGW--DRRVRIYNYRKGSALAILKYH 348
G V + + + + P S + AT G DR +RI+N G+ L+ + H
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 349 HATCN 353
C+
Sbjct: 321 SQVCS 325
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 333 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379
I+ Y + +A LK H + +++ S D +ASA+ D T+ LW +
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 23/185 (12%)
Query: 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 231
Y+AV G +EV++WD+ +R + +S R ++ +Y+ S
Sbjct: 172 YLAV-GTSSAEVQLWDVQQQKRLRNMTSHSA----------RVGSLSWNSYILS------ 214
Query: 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 291
+G G I D+R + + H + V L SGG D + ++
Sbjct: 215 ---SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 271
Query: 292 HSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGW--DRRVRIYNYRKGSALAILKYH 348
G V + + + + P S + AT G DR +RI+N G+ L+ + H
Sbjct: 272 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 349 HATCN 353
C+
Sbjct: 332 SQVCS 336
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 333 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379
I+ Y + +A LK H + +++ S D +ASA+ D T+ LW +
Sbjct: 359 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 405
>pdb|3MWP|A Chain A, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|B Chain B, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|C Chain C, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWT|A Chain A, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|B Chain B, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|C Chain C, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MX2|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX5|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Utp
Length = 577
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 75 GLNKVISQGRDGTVKCWDIENGGLSSN-----PSLTI 106
G N+ GRDG V+ WD++N L +N PSLT+
Sbjct: 156 GGNQGARAGRDGVVRVWDVKNAELLNNQFGTMPSLTL 192
>pdb|2OOI|A Chain A, The Crystal Structure Of Gene Product Sa0254 From
Staphylocococcus Aureus Subsp. Aureus N315
pdb|2OOI|B Chain B, The Crystal Structure Of Gene Product Sa0254 From
Staphylocococcus Aureus Subsp. Aureus N315
Length = 162
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 136 YEREVGETVDTD----SLCDSKESNRSFEI-IDDVPAEGPKYMAVAGEQLSEVEIWDLNT 190
Y +E+ + ++ D S+ D ESN I D+ + V SE + L+T
Sbjct: 70 YHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDI------FFNVDKLTSSEASLLQLST 123
Query: 191 AERCTRLHQN--SCGGSPNFSSKGRGMCMAVQAYLPSK 226
E C R HQ + G P SS Q Y+PSK
Sbjct: 124 GEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSK 161
>pdb|4IFU|A Chain A, Crystal Structure Of Treponema Pallidum Tp0796 Fad
Processing Protein, Apo Form
pdb|4IFW|A Chain A, Crystal Structure Of Treponema Pallidum Tp0796 Fad
Processing Protein, Adp Inhibited Form
pdb|4IFX|A Chain A, Crystal Structure Of Treponema Pallidum Tp0796 Fad
Processing Protein, Fad Substrate Bound Form
pdb|4IFZ|A Chain A, Crystal Structure Of Treponema Pallidum Tp0796 Fad
Processing Protein, Mn(ii)-amp Product Bound Form
pdb|4IG1|A Chain A, Crystal Structure Of Treponema Pallidum Tp0796 Fad
Processing Protein, Mg(ii)-amp Product Bound Form
Length = 340
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 296 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 337
SC + +E PG+ I PD ++ A+AG RVR+ + R
Sbjct: 298 SCALLREF----PGVDALFIFPDKRVRASAGIVDRVRVLDAR 335
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 83 GRDGTVKCWDIENGGLSSN-----PSLTI 106
GRDG V+ WD++N L +N PSLT+
Sbjct: 156 GRDGVVRVWDVKNAELLNNQFGTMPSLTL 184
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 277 ISGGADQKIVLYNLDHSTGSCVIKKEI----NLERPGISGTSIRPDSKIAATAGWDRRVR 332
I+G DQ VL+++ + E + +S S+ + I+ + D VR
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC--DTTVR 231
Query: 333 IYNYRKGS-ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382
+++ R S A+ H N+V F D + + S+D T L+++ H
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 21 VTDVCFHQTKPILFAGTTGGELRIWDTV 48
VT V F + +LFAG + G+ +WDT+
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTL 328
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWD 46
PV++L+ H A + +V FH + P LF + G L WD
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVH 260
V G +DG + +WD+R +P++ +K H
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAH 279
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
H V DVC+ +F + ++WD ++ + + H A + P+
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHDAPVKTIHWIKAPNYSC 143
Query: 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114
V++ D T+K WD SSNP + ++ +C
Sbjct: 144 --VMTGSWDKTLKFWDTR----SSNPMMVLQLPERCYC 175
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 328 DRRVRIYNYRKGSALA---ILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378
D+++ I++ R + ++ H A N +SF+ + ++A+ S D TVALW+L
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG-IVSVATGPSIGL 76
A VTDV + K IL A +G + +W+ ++ ++ + H IV + S G
Sbjct: 94 EAGVTDVAWVSEKGILVASDSGA-VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG- 151
Query: 77 NKVISQGRDGTVKCWDI 93
+ +S G+D +VK WD+
Sbjct: 152 TQAVSGGKDFSVKVWDL 168
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 139 EVGETVDTDSLCDSKESNRSFE-IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 197
E+ E ++ +SL +K + + I+ + AV+G + V++WDL +++
Sbjct: 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL--SQKAVLK 175
Query: 198 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250
N+ N C+A P K F L+ EDG IL+WD R P
Sbjct: 176 SYNAHSSEVN--------CVAA---CPGKDTIF---LSCGEDGRILLWDTRKP 214
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 328 DRRVRIYNYRKGSALA---ILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378
D+++ I++ R + ++ H A N +SF+ + ++A+ S D TVALW+L
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 346 KYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378
K H A F+ C LMA++S D+TV LW+L
Sbjct: 200 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDL 233
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 346 KYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378
K H A F+ C LMA++S D+TV LW+L
Sbjct: 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDL 234
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 210 SKGRGMCMAVQAYLPSKSQGFVNV-----LAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 264
+KG +C+ + Y+ KS F + L DGS+ WD PG+ A+ P
Sbjct: 337 AKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGL---AIYDFTNPD 393
Query: 265 LCLSIDESCNGGISGGAD 282
C + G ++ G D
Sbjct: 394 ACKWYADKLKGLVAXGVD 411
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 328 DRRVRIYNYRKGSALA---ILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378
D+++ I++ R + + H A N +SF+ + ++A+ S D TVALW+L
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 328 DRRVRIYNYRKGSALA---ILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378
D+++ I++ R + + H A N +SF+ + ++A+ S D TVALW+L
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 311
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79
+V+ +C + +L GTT G + IWD ++ + SW I V G N V
Sbjct: 216 AVSSICIDEECCVLILGTTRGIIDIWD-IRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV 274
Query: 80 ISQG 83
I G
Sbjct: 275 IVVG 278
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 328 DRRVRIYNYRKGSALA---ILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378
D+++ I++ R + + H A N +SF+ + ++A+ S D TVALW+L
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 309
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 208 FSSKGRGMCMAVQAYLPSKSQGFVNV-----LAGYEDGSILVWDIRNPGIPLTAMKVHLE 262
+KG +C+ + Y+ KS F + L DGS+ WD PG+ A+
Sbjct: 335 LKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGL---AIYDFTN 391
Query: 263 PVLCLSIDESCNGGISGGAD 282
P C + G ++ G D
Sbjct: 392 PDACKWYADKLKGLVAMGVD 411
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 208 FSSKGRGMCMAVQAYLPSKSQGFVNV-----LAGYEDGSILVWDIRNPGIPLTAMKVHLE 262
+KG +C+ + Y+ KS F + L DGS+ WD PG+ A+
Sbjct: 335 LKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGL---AIYDFTN 391
Query: 263 PVLCLSIDESCNGGISGGAD 282
P C + G ++ G D
Sbjct: 392 PDACKWYADKLKGLVAMGVD 411
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 328 DRRVRIYNYRKGSALA---ILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378
D+++ I++ R + + H A N +SF+ + ++A+ S D TVALW+L
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 286 VLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328
+ Y L ++G V++ IN++ G+S + KIA W+
Sbjct: 263 IAYTLKDASGKAVLQDAINIKSRGLSNFIAFDEKKIAEVKAWN 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,317,244
Number of Sequences: 62578
Number of extensions: 507262
Number of successful extensions: 1666
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 509
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)