Query 016770
Match_columns 383
No_of_seqs 125 out of 161
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2895 Uncharacterized conser 100.0 6E-112 1E-116 818.9 16.2 365 2-377 9-406 (408)
2 PF10998 DUF2838: Protein of u 100.0 7.6E-53 1.7E-57 359.0 6.4 111 66-176 1-111 (111)
3 TIGR00383 corA magnesium Mg(2+ 83.5 19 0.00041 35.3 12.2 100 16-115 212-317 (318)
4 COG0598 CorA Mg2+ and Co2+ tra 82.4 15 0.00032 36.8 11.0 66 17-82 217-282 (322)
5 PF00957 Synaptobrevin: Synapt 78.2 24 0.00053 28.4 9.1 50 13-63 10-59 (89)
6 PF08172 CASP_C: CASP C termin 75.7 8.2 0.00018 37.8 6.7 47 19-72 88-134 (248)
7 PF05957 DUF883: Bacterial pro 71.8 27 0.00059 28.6 8.0 31 27-57 27-57 (94)
8 PF15175 SPATA24: Spermatogene 71.3 19 0.00041 33.0 7.3 42 13-54 3-50 (153)
9 PRK09546 zntB zinc transporter 69.2 75 0.0016 31.5 11.9 8 108-115 316-323 (324)
10 PF10166 DUF2368: Uncharacteri 68.6 60 0.0013 29.0 9.9 44 69-128 55-99 (131)
11 PF05957 DUF883: Bacterial pro 66.1 72 0.0016 26.1 9.5 15 12-26 26-40 (94)
12 PRK10404 hypothetical protein; 66.0 46 0.00099 28.3 8.3 22 28-49 35-56 (101)
13 PF02009 Rifin_STEVOR: Rifin/s 65.1 4.8 0.0001 40.5 2.6 48 7-54 29-77 (299)
14 KOG3251 Golgi SNAP receptor co 60.6 54 0.0012 31.7 8.6 68 11-84 127-208 (213)
15 PF03904 DUF334: Domain of unk 58.1 1.1E+02 0.0025 29.8 10.3 21 36-56 118-138 (230)
16 PF04420 CHD5: CHD5-like prote 57.9 25 0.00054 32.0 5.7 12 36-47 71-82 (161)
17 PF07798 DUF1640: Protein of u 57.6 93 0.002 28.5 9.4 15 14-28 88-102 (177)
18 PF07889 DUF1664: Protein of u 56.5 51 0.0011 29.3 7.2 38 19-56 38-75 (126)
19 COG4575 ElaB Uncharacterized c 56.5 73 0.0016 27.6 7.8 14 11-24 35-48 (104)
20 PF11166 DUF2951: Protein of u 56.4 52 0.0011 28.1 6.8 22 64-85 69-90 (98)
21 PF15188 CCDC-167: Coiled-coil 56.3 43 0.00094 27.9 6.3 65 14-84 20-84 (85)
22 PF14023 DUF4239: Protein of u 54.8 75 0.0016 29.4 8.4 48 9-56 83-130 (209)
23 PF03908 Sec20: Sec20; InterP 54.2 1.2E+02 0.0026 24.8 9.6 69 12-81 7-84 (92)
24 PRK11085 magnesium/nickel/coba 53.1 1.7E+02 0.0037 29.6 11.2 9 107-115 307-315 (316)
25 PTZ00046 rifin; Provisional 51.4 39 0.00084 35.0 6.4 47 8-54 50-97 (358)
26 PF00611 FCH: Fes/CIP4, and EF 50.0 96 0.0021 24.2 7.3 49 12-61 8-56 (91)
27 KOG3385 V-SNARE [Intracellular 49.7 29 0.00063 30.6 4.4 55 6-60 29-93 (118)
28 PHA01750 hypothetical protein 49.1 69 0.0015 25.7 6.0 29 16-44 26-55 (75)
29 TIGR01477 RIFIN variant surfac 47.4 43 0.00093 34.6 6.0 48 7-54 52-100 (353)
30 PHA00448 hypothetical protein 44.3 81 0.0018 25.3 5.7 45 20-64 21-68 (70)
31 KOG3080 Nucleolar protein-like 43.3 57 0.0012 33.1 6.0 15 10-24 177-191 (328)
32 PF10779 XhlA: Haemolysin XhlA 42.5 1.7E+02 0.0036 23.0 8.3 9 15-23 8-16 (71)
33 COG3883 Uncharacterized protei 42.4 55 0.0012 32.6 5.7 49 12-60 58-109 (265)
34 KOG2856 Adaptor protein PACSIN 42.0 1.4E+02 0.003 31.5 8.6 86 9-94 173-259 (472)
35 PRK01100 putative accessory ge 41.0 1.7E+02 0.0036 27.7 8.6 50 73-132 49-100 (210)
36 COG1422 Predicted membrane pro 39.5 1.3E+02 0.0029 28.8 7.5 24 11-34 70-93 (201)
37 COG5143 SNC1 Synaptobrevin/VAM 39.4 1.2E+02 0.0025 28.9 7.1 64 12-77 111-175 (190)
38 PF10158 LOH1CR12: Tumour supp 38.9 1.7E+02 0.0036 26.1 7.7 39 17-55 35-73 (131)
39 PF04678 DUF607: Protein of un 38.4 1.8E+02 0.0039 26.8 8.1 9 66-74 123-131 (180)
40 PF04799 Fzo_mitofusin: fzo-li 37.0 2.6E+02 0.0056 26.3 8.8 62 15-83 107-168 (171)
41 PF07889 DUF1664: Protein of u 36.7 2E+02 0.0044 25.6 7.8 57 13-69 50-106 (126)
42 PF05890 Ebp2: Eukaryotic rRNA 36.0 98 0.0021 30.8 6.3 22 11-32 116-137 (271)
43 PF04647 AgrB: Accessory gene 35.7 59 0.0013 29.4 4.5 53 70-132 34-88 (185)
44 KOG0860 Synaptobrevin/VAMP-lik 35.0 3.2E+02 0.0069 24.1 8.9 27 14-40 37-63 (116)
45 PF00631 G-gamma: GGL domain; 34.8 51 0.0011 25.6 3.4 35 32-66 3-37 (68)
46 PF01376 Enterotoxin_b: Heat-l 34.2 21 0.00045 29.9 1.1 23 328-350 41-63 (102)
47 PF11559 ADIP: Afadin- and alp 33.7 1.9E+02 0.0041 25.5 7.3 41 28-68 109-149 (151)
48 PRK10132 hypothetical protein; 32.6 3.3E+02 0.0071 23.5 9.2 21 28-48 42-62 (108)
49 PF12732 YtxH: YtxH-like prote 32.6 2.4E+02 0.0053 22.0 7.2 40 12-54 21-60 (74)
50 PF14235 DUF4337: Domain of un 32.5 2.1E+02 0.0045 26.2 7.4 7 67-73 112-118 (157)
51 KOG3091 Nuclear pore complex, 31.6 1.3E+02 0.0028 32.6 6.7 25 14-38 335-359 (508)
52 PF04102 SlyX: SlyX; InterPro 31.6 2.3E+02 0.0049 22.2 6.6 34 36-69 16-49 (69)
53 KOG2629 Peroxisomal membrane a 31.4 1.2E+02 0.0025 30.8 6.0 43 13-55 118-160 (300)
54 PRK14011 prefoldin subunit alp 31.2 1.3E+02 0.0028 27.2 5.8 53 7-59 82-137 (144)
55 PRK10884 SH3 domain-containing 30.5 2.9E+02 0.0062 26.4 8.3 7 70-76 174-180 (206)
56 COG5336 Uncharacterized protei 30.4 1.3E+02 0.0028 26.4 5.4 28 69-96 51-78 (116)
57 PF04568 IATP: Mitochondrial A 30.3 61 0.0013 27.7 3.3 7 11-17 50-56 (100)
58 PF07795 DUF1635: Protein of u 29.9 2.6E+02 0.0057 27.1 7.9 55 13-67 1-63 (214)
59 PF02388 FemAB: FemAB family; 29.2 1.6E+02 0.0035 30.5 6.9 54 11-64 240-295 (406)
60 PF01956 DUF106: Integral memb 29.1 2.4E+02 0.0053 25.2 7.3 22 67-88 91-120 (168)
61 PF02646 RmuC: RmuC family; I 29.1 1.3E+02 0.0028 30.0 6.0 53 12-65 12-64 (304)
62 PRK00846 hypothetical protein; 29.1 3.2E+02 0.007 22.3 7.4 33 37-69 26-58 (77)
63 PRK12765 flagellar capping pro 28.9 1.4E+02 0.0029 33.0 6.5 51 14-64 529-579 (595)
64 PF01618 MotA_ExbB: MotA/TolQ/ 28.9 1.6E+02 0.0034 25.7 5.9 61 10-78 13-74 (139)
65 PRK12585 putative monovalent c 28.7 1.2E+02 0.0027 29.0 5.4 18 51-68 148-165 (197)
66 PRK14159 heat shock protein Gr 28.4 2.1E+02 0.0046 26.7 6.9 49 2-54 19-67 (176)
67 PF01765 RRF: Ribosome recycli 26.5 2.1E+02 0.0045 26.0 6.4 29 32-60 131-159 (165)
68 PF13874 Nup54: Nucleoporin co 26.3 2.1E+02 0.0046 25.3 6.3 34 13-46 30-63 (141)
69 PF04420 CHD5: CHD5-like prote 25.9 3.5E+02 0.0076 24.5 7.7 36 39-74 67-102 (161)
70 cd07647 F-BAR_PSTPIP The F-BAR 25.8 5.2E+02 0.011 24.6 9.3 34 11-44 151-184 (239)
71 PF10168 Nup88: Nuclear pore c 25.1 70 0.0015 36.0 3.6 58 13-70 653-717 (717)
72 PF01452 Rota_NSP4: Rotavirus 23.9 87 0.0019 29.1 3.3 20 33-52 92-111 (173)
73 PF08372 PRT_C: Plant phosphor 23.6 2.1E+02 0.0045 26.4 5.7 35 36-70 57-91 (156)
74 PF08112 ATP-synt_E_2: ATP syn 23.1 3.3E+02 0.0072 21.0 5.7 23 34-56 18-40 (56)
75 cd07655 F-BAR_PACSIN The F-BAR 23.0 6.8E+02 0.015 24.2 9.6 78 12-90 167-246 (258)
76 KOG2629 Peroxisomal membrane a 22.8 3.5E+02 0.0075 27.6 7.5 39 9-47 125-163 (300)
77 KOG0859 Synaptobrevin/VAMP-lik 22.8 1.3E+02 0.0029 29.0 4.4 38 36-73 130-167 (217)
78 PRK04406 hypothetical protein; 22.7 4.1E+02 0.0089 21.4 7.4 33 36-68 23-55 (75)
79 COG4035 Predicted membrane pro 22.5 82 0.0018 27.0 2.7 30 61-90 37-86 (108)
80 cd00520 RRF Ribosome recycling 22.5 2.4E+02 0.0053 26.1 6.1 47 15-61 124-174 (179)
81 PRK11546 zraP zinc resistance 21.9 1.6E+02 0.0035 26.8 4.6 51 14-67 51-104 (143)
82 smart00793 AgrB Accessory gene 21.8 1.8E+02 0.0039 26.8 5.1 51 72-132 36-88 (184)
83 PF14584 DUF4446: Protein of u 21.8 1.5E+02 0.0032 27.0 4.4 45 10-54 39-83 (151)
84 PF10158 LOH1CR12: Tumour supp 21.6 2.9E+02 0.0063 24.6 6.2 17 52-68 97-113 (131)
85 cd07680 F-BAR_PACSIN1 The F-BA 21.6 6.9E+02 0.015 24.6 9.4 77 11-88 166-244 (258)
86 PRK08307 stage III sporulation 21.4 2.8E+02 0.0061 25.4 6.3 42 38-79 128-169 (171)
87 PRK00106 hypothetical protein; 21.3 2.9E+02 0.0063 30.2 7.2 13 162-174 376-388 (535)
88 PRK12704 phosphodiesterase; Pr 20.9 3E+02 0.0065 29.8 7.2 31 22-52 112-142 (520)
89 PHA02132 hypothetical protein 20.5 1.1E+02 0.0023 25.0 2.8 28 220-247 54-81 (86)
90 PF10779 XhlA: Haemolysin XhlA 20.5 4.2E+02 0.0091 20.7 9.2 7 18-24 4-10 (71)
91 TIGR03319 YmdA_YtgF conserved 20.4 2.6E+02 0.0056 30.2 6.6 10 165-174 358-367 (514)
92 PF10046 BLOC1_2: Biogenesis o 20.1 4.6E+02 0.01 21.8 6.8 18 49-66 66-83 (99)
No 1
>KOG2895 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.7e-112 Score=818.87 Aligned_cols=365 Identities=65% Similarity=1.102 Sum_probs=331.4
Q ss_pred CCccccccccCCchHHHHHHHhh-------------hhHHHHhhHHHHHHHH----------------HHHHHHHHHHHH
Q 016770 2 LSDETVEETNGDSFGKVKQRFKD-------------RSQKVVQTKAIMSKKA----------------VQTKEMLSKQAV 52 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 52 (383)
+.||+-++++.|+++..++|++| |+||+.|++|-++||+ .++++++++|.+
T Consensus 9 IddEdnns~gLds~~~f~d~f~~kvvskyYhgsHls~~~kk~q~~eg~srqkdshhPhHlnrsrsflql~~r~~~s~q~~ 88 (408)
T KOG2895|consen 9 IDDEDNNSNGLDSFDAFKDRFKDKVVSKYYHGSHLSRSKKKVQTREGLSRQKDSHHPHHLNRSRSFLQLQTREILSKQAV 88 (408)
T ss_pred ccccccCcccchhHHHHhhhhcccchheeecchhhhHHHHHHhhHHhhhhcccccCchhhhcchhhhhHHHHHhHHHHHH
Confidence 46899999999999999999999 9999999999999999 778899999999
Q ss_pred HHHHHHhhhhhhh-hhHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHhhhhhhhhhhheecccchhhhchhHHHHHHHH
Q 016770 53 KIAKQAEEHERFI-NKVTHLLGVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIYYRFKKWHYYLLDFCYYANTIFL 131 (383)
Q Consensus 53 ~i~~~~~~~~r~~-dKvsF~~GVl~i~~s~fl~G~~Pe~~~~~Yti~~~~lmPiR~y~Y~k~~~HYFLlDfCYfvN~l~l 131 (383)
+++|++++++|++ ||++|.+||+|++.+||++|++||++|+|||++++++||+|||||+++||||||+|||||+|+|++
T Consensus 89 ~~~~~~~~~~rF~neK~~~~~gv~~~~~~~fL~G~~Pe~~hl~Yti~~fV~~PlR~ytY~~kk~hYflaDFCY~~N~l~L 168 (408)
T KOG2895|consen 89 KIAKQAEEHERFINEKVTHLVGVLGFGGFCFLLGARPEDIHLVYTIFYFVFVPLRWYTYRFKKWHYFLADFCYYANTLFL 168 (408)
T ss_pred HhhcccccceeeeccchhhhhHHHHHHHHHHHhccCcccceeeeeeeeheeeeeeEEEEEeccceeehhHHHHHHhHHHH
Confidence 9999999999999 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCChhhHHHHHHhccCchhHHHHhhhcceeeccccchhhhhhhhhhhhhhhhhhccCcchhhccCCCCCcccCC
Q 016770 132 VDLLMYPKNEKLFMVCFSFAEGPLAWALIVWRCSLVFNSVDKIVSVLIHLLPGLVFFTIRWWNPESFAAMHPEGSSRRAS 211 (383)
Q Consensus 132 ~~iw~~P~s~~LF~~~F~la~GPLa~AIi~WRNSLVFHSiDK~TSlFIHi~Pplv~~~iRw~~~~~~~~~~p~~~~~~~s 211 (383)
++||+||.|.+||++||++|.||||||||+|||||||||+||+||||||++||+|+|+|||+.|.++..- ..
T Consensus 169 v~iwifP~s~~LF~~cfsf~~GtLawaVi~WRnSLvfhSiDKitS~fIH~~PplV~~tI~h~~p~~y~~d--------Rf 240 (408)
T KOG2895|consen 169 VDIWIFPKSEKLFMVCFSFAEGTLAWAVIVWRNSLVFHSIDKITSVFIHLLPPLVFFTIRHWNPATYATD--------RF 240 (408)
T ss_pred HHhhhcccchhHhhhhhhhccccceeeeeeeecceeEeccchhheeeeeccCceeEEEEeecCchhhhhh--------cC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988622 23
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhheeecceeccCCCcchhHHHHHhhhccccchhhhhhccCCCchhHHH
Q 016770 212 WPYVEDKSYLLTWLFLVPLGAYTLWQVLYFLIVNVLRRQRLVRDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNRMFM 291 (383)
Q Consensus 212 ~p~~~~~~~~~~~~~~~P~~~Y~iWQ~lY~~~i~v~rr~ki~~~~~~~TSf~~L~~~~~k~~~~~~~l~~~~~~~~~~~~ 291 (383)
||.++++.+..+|.+++|+++|++||++|++||+|.|. +.+++||||||||||++.. ++++..+++++.+|++.+.+|
T Consensus 241 p~~v~~k~~d~~~~~l~~s~~Y~lWQvlY~~fI~v~kq-~~i~~germTSf~~Lska~-~~n~kl~~l~~~lp~~~~~~~ 318 (408)
T KOG2895|consen 241 PPYVEDKAYDFTWLFLVPSVVYTLWQVLYFLFINVLKQ-RLIRDGERMTSFRELSKAE-KANNKLWQLSGLLPDQNRIWM 318 (408)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HhccCCcccchHHHHHHHH-hhcchHHhhcccCccccchhH
Confidence 45566777889999999999999999999999999874 5558889999999999654 445666799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCceeeEEechhhhHHHHHhh--hhcCCCCCCCCc-ccccc
Q 016770 292 YIAFQAIFTVATMALTVPIFLSYKLHVIFQILKISAAIWNGGSFLLEVMPKQVILKEKKK--AEIQPAQPQRPQ-DQSLV 368 (383)
Q Consensus 292 fm~~Q~~ytv~Tmll~~p~~~sy~~h~~fl~~if~~svwNGAtyYidvFgkry~~ke~~k--~~~~~~~~~~~~-~~~~~ 368 (383)
||++|++||+.||+||.|++.++.+|++|++++|+||+||||+|||||||||. ++|+++ .|+|+.+++--. +..|.
T Consensus 319 y~l~Qy~y~v~TMllc~~w~~~kl~~~~Fl~l~f~wavwNGasyyidv~grr~-~~e~e~l~q~lqp~~~~~~s~~avs~ 397 (408)
T KOG2895|consen 319 YILFQYIYTVATMLLCVPWFLSKLLHVIFLILKFSWAVWNGASYYIDVMGRRV-IQEEEKLKQELQPIEEQILSHEAVSH 397 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeehhhhhHHH-HHHHHHHHHhcCCChhhhcchhhcCC
Confidence 99999999999999999999999999999999999999999999999999998 555544 566655443222 44566
Q ss_pred ccccccccc
Q 016770 369 LMENSIETN 377 (383)
Q Consensus 369 ~~~~~~~~~ 377 (383)
+.||+++..
T Consensus 398 ~~~~~~~~~ 406 (408)
T KOG2895|consen 398 PTENEPKST 406 (408)
T ss_pred CcccCcCCC
Confidence 777777644
No 2
>PF10998 DUF2838: Protein of unknown function (DUF2838); InterPro: IPR021261 This bacterial family of proteins has no known function.
Probab=100.00 E-value=7.6e-53 Score=358.97 Aligned_cols=111 Identities=50% Similarity=1.040 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHhhhhhhhhhhheecccchhhhchhHHHHHHHHHHHhccCCChhhHH
Q 016770 66 NKVTHLLGVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIYYRFKKWHYYLLDFCYYANTIFLVDLLMYPKNEKLFM 145 (383)
Q Consensus 66 dKvsF~~GVl~i~~s~fl~G~~Pe~~~~~Yti~~~~lmPiR~y~Y~k~~~HYFLlDfCYfvN~l~l~~iw~~P~s~~LF~ 145 (383)
||++|++||+|+++++|++|++||++|++|+++++++||+|+++|||+||||||+|||||+|++++++||.+|+|++||+
T Consensus 1 dK~sF~~gV~~~~~~~~l~g~~P~~~~~~y~~~~~~l~p~R~~~Y~k~~~hYfl~D~CY~~N~l~l~~iw~~p~s~~lf~ 80 (111)
T PF10998_consen 1 DKISFVFGVLNILLTGFLLGARPEHFPYWYTVQLIVLMPLRFYTYRKKKWHYFLLDFCYFVNFLLLLFIWVFPKSPRLFR 80 (111)
T ss_pred CcEEEeHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeecHHHHHHHHHHHHHHccCCChHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCchhHHHHhhhcceeeccccchhh
Q 016770 146 VCFSFAEGPLAWALIVWRCSLVFNSVDKIVS 176 (383)
Q Consensus 146 ~~F~la~GPLa~AIi~WRNSLVFHSiDK~TS 176 (383)
+|||+|+|||+||||+|||||||||+||+||
T Consensus 81 ~~f~la~GpL~~Aii~wrNSlVfHS~dk~tS 111 (111)
T PF10998_consen 81 ACFCLANGPLAWAIITWRNSLVFHSIDKVTS 111 (111)
T ss_pred HHHHHccChHHHHHHHHcccccccchhhccC
Confidence 9999999999999999999999999999998
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=83.50 E-value=19 Score=35.25 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhc--ccCch---
Q 016770 16 GKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLGVLGFGGFCFLLG--ARPHD--- 90 (383)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~GVl~i~~s~fl~G--~~Pe~--- 90 (383)
+..++.++|=..+..+..+..+...+.+..+++-....++-+..+.-|.+.-++=++.+++++.+-|=|- ..||.
T Consensus 212 ~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~ 291 (318)
T TIGR00383 212 EEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWK 291 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccch
Confidence 4455566665555566666666666666666655566667777777777777887777777666655332 35652
Q ss_pred hHHHHHHHHhhhhhh-hhhhheeccc
Q 016770 91 IHYVYCLFYIIFVPL-RWIYYRFKKW 115 (383)
Q Consensus 91 ~~~~Yti~~~~lmPi-R~y~Y~k~~~ 115 (383)
+.+++++.++.++.+ =++.+|||||
T Consensus 292 ~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 292 YGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 223334333333332 2334667777
No 4
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=82.41 E-value=15 Score=36.75 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=39.7
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 016770 17 KVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLGVLGFGGFCF 82 (383)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~GVl~i~~s~f 82 (383)
..|..++|-.....|..|.++...+.+...+.--...|.-+..+..+++.=+|-++...+++.+-|
T Consensus 217 ~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiy 282 (322)
T COG0598 217 EDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFY 282 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccc
Confidence 345555555555555556666555555555555555666666666677777777766666665544
No 5
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=78.19 E-value=24 Score=28.39 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=30.2
Q ss_pred CchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016770 13 DSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHER 63 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r 63 (383)
++++.++.-|++-.++..+..|.|+..-+++. .|+.+.....+.+.+..|
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~-~L~~~a~~F~k~a~~l~r 59 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTE-ELSDNAKQFKKNAKKLKR 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH-HHHHHhHHHHHHHHHHHH
Confidence 35667777777777777777776665444443 344555566665555443
No 6
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.66 E-value=8.2 Score=37.77 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=38.7
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 016770 19 KQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLL 72 (383)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~ 72 (383)
|+|||+|. ..|+++..+.+..+++--..|++-....+++.+|+-|+-
T Consensus 88 RDRFR~Rn-------~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 88 RDRFRQRN-------AELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777666 668888888888888888899887777899999999873
No 7
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=71.78 E-value=27 Score=28.56 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=17.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016770 27 QKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQ 57 (383)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 57 (383)
++..+.++.+++..+++++.+.+.......+
T Consensus 27 ~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~ 57 (94)
T PF05957_consen 27 EKADEARDRAEEALDDARDRAEDAADQAREQ 57 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666665555544333
No 8
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=71.34 E-value=19 Score=32.97 Aligned_cols=42 Identities=26% Similarity=0.475 Sum_probs=36.5
Q ss_pred CchHHHHHHHhhhhHHHHhhHHHHHHHHHHHH------HHHHHHHHHH
Q 016770 13 DSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTK------EMLSKQAVKI 54 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i 54 (383)
+.++++++.+-+....+.+|+..|.++..+++ ++|+||+.|=
T Consensus 3 eE~~~~~~~l~~Ek~eHaKTK~lLake~EKLqfAlgeieiL~kQl~re 50 (153)
T PF15175_consen 3 EEFEAVEKKLEEEKAEHAKTKALLAKESEKLQFALGEIEILSKQLERE 50 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 57999999999988899999999988888887 7888888754
No 9
>PRK09546 zntB zinc transporter; Reviewed
Probab=69.21 E-value=75 Score=31.55 Aligned_cols=8 Identities=25% Similarity=0.804 Sum_probs=4.8
Q ss_pred hhheeccc
Q 016770 108 IYYRFKKW 115 (383)
Q Consensus 108 y~Y~k~~~ 115 (383)
+..||+||
T Consensus 316 ~~fkrk~W 323 (324)
T PRK09546 316 WWLKRSKW 323 (324)
T ss_pred HHHHhccc
Confidence 34666676
No 10
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=68.56 E-value=60 Score=28.99 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhcccCchhHHHHHHHHhhhhhhhhhh-heecccchhhhchhHHHHH
Q 016770 69 THLLGVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIY-YRFKKWHYYLLDFCYYANT 128 (383)
Q Consensus 69 sF~~GVl~i~~s~fl~G~~Pe~~~~~Yti~~~~lmPiR~y~-Y~k~~~HYFLlDfCYfvN~ 128 (383)
+|...|...+..++.-.+.|..+ ++++|+=++. | =.|+||=.+.
T Consensus 55 ~f~~l~~~~~~~~~~k~K~~~~l--------~PlvPL~fv~~Y--------q~D~ayG~kl 99 (131)
T PF10166_consen 55 SFYALAAVGLIAGAIKRKNPLFL--------IPLVPLTFVLGY--------QYDMAYGTKL 99 (131)
T ss_pred HHHHHHHHHHHHHHHhccCcchh--------hhHHHHHHHHHH--------HHHHHhhHHH
Confidence 34433334444455556666543 7888888765 4 3699997664
No 11
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=66.11 E-value=72 Score=26.06 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=8.5
Q ss_pred CCchHHHHHHHhhhh
Q 016770 12 GDSFGKVKQRFKDRS 26 (383)
Q Consensus 12 ~~~~~~~~~~~~~~~ 26 (383)
++..+..|+|+.++.
T Consensus 26 ~~~~~~~r~~~~~~~ 40 (94)
T PF05957_consen 26 GEKADEARDRAEEAL 40 (94)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666666665543
No 12
>PRK10404 hypothetical protein; Provisional
Probab=66.01 E-value=46 Score=28.33 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=9.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 016770 28 KVVQTKAIMSKKAVQTKEMLSK 49 (383)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~ 49 (383)
+..+.|++++...+.+++.+.+
T Consensus 35 ~~~~lR~r~~~~L~~ar~~l~~ 56 (101)
T PRK10404 35 KYVELKARAEKALDDVKKRVSQ 56 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 13
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=65.12 E-value=4.8 Score=40.48 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=40.3
Q ss_pred cccccCCchHHHHHHHhhh-hHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016770 7 VEETNGDSFGKVKQRFKDR-SQKVVQTKAIMSKKAVQTKEMLSKQAVKI 54 (383)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 54 (383)
.+-.||.+..+|.+.|.+| ++.++.=+|++.....+.||...|++++|
T Consensus 29 snYDNDPeMK~Vme~F~rqTsQRF~EYdErm~~kRqkcKEqcDKeIQKI 77 (299)
T PF02009_consen 29 SNYDNDPEMKSVMENFDRQTSQRFEEYDERMQEKRQKCKEQCDKEIQKI 77 (299)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcccccee
Confidence 4556899999999999886 45566667888888899999999999987
No 14
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.55 E-value=54 Score=31.66 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=38.9
Q ss_pred cCCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhhhhhhhhHHHHHHHHH
Q 016770 11 NGDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAV--------------KIAKQAEEHERFINKVTHLLGVLG 76 (383)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~i~~~~~~~~r~~dKvsF~~GVl~ 76 (383)
..|+|++-.+.+.|--.-=...-|.|.+|...++..= |.+. -|+|+.. -||+-|.+||..
T Consensus 127 ~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~-~ki~~~~ntLGlSn~ti~lIeRR~~-----~Dk~iF~~G~i~ 200 (213)
T KOG3251|consen 127 ENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQ-KKILDILNTLGLSNQTIRLIERRVR-----EDKIIFYGGVIL 200 (213)
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHH-----hhHHHHHHHHHH
Confidence 4567777777776643333334455655555444322 2222 2333333 399999999988
Q ss_pred HHHHHHHh
Q 016770 77 FGGFCFLL 84 (383)
Q Consensus 77 i~~s~fl~ 84 (383)
+++.=|++
T Consensus 201 ~~v~~yl~ 208 (213)
T KOG3251|consen 201 TLVIMYLF 208 (213)
T ss_pred HHHHHHHH
Confidence 77765543
No 15
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=58.13 E-value=1.1e+02 Score=29.84 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016770 36 MSKKAVQTKEMLSKQAVKIAK 56 (383)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~i~~ 56 (383)
+.+...+.++.+.+..+++..
T Consensus 118 ~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 118 AQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555433
No 16
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=57.88 E-value=25 Score=31.98 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 016770 36 MSKKAVQTKEML 47 (383)
Q Consensus 36 ~~~~~~~~~~~~ 47 (383)
++|+.+++++.+
T Consensus 71 l~Rk~~kl~~el 82 (161)
T PF04420_consen 71 LNRKLDKLEEEL 82 (161)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 17
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=57.63 E-value=93 Score=28.51 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=9.1
Q ss_pred chHHHHHHHhhhhHH
Q 016770 14 SFGKVKQRFKDRSQK 28 (383)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (383)
.+|+++++|++.-.+
T Consensus 88 eie~l~~~L~~ei~~ 102 (177)
T PF07798_consen 88 EIEKLRQELREEINK 102 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777777664433
No 18
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.51 E-value=51 Score=29.27 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016770 19 KQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAK 56 (383)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 56 (383)
||.|.|-...+.+.-|.+......+|+.|+.++.++++
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~ 75 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDD 75 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555556666555555544
No 19
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=56.47 E-value=73 Score=27.58 Aligned_cols=14 Identities=14% Similarity=0.385 Sum_probs=6.3
Q ss_pred cCCchHHHHHHHhh
Q 016770 11 NGDSFGKVKQRFKD 24 (383)
Q Consensus 11 ~~~~~~~~~~~~~~ 24 (383)
++|+.+++|.|...
T Consensus 35 a~~e~~~lR~r~~~ 48 (104)
T COG4575 35 AGDEAEELRSKAES 48 (104)
T ss_pred hhhHHHHHHHHHHH
Confidence 34444444444433
No 20
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=56.36 E-value=52 Score=28.08 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhc
Q 016770 64 FINKVTHLLGVLGFGGFCFLLG 85 (383)
Q Consensus 64 ~~dKvsF~~GVl~i~~s~fl~G 85 (383)
..|==..++|..+.+++.++++
T Consensus 69 ir~~KmwilGlvgTi~gsliia 90 (98)
T PF11166_consen 69 IRDIKMWILGLVGTIFGSLIIA 90 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455568899999888888775
No 21
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=56.33 E-value=43 Score=27.90 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=31.7
Q ss_pred chHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 016770 14 SFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLGVLGFGGFCFLL 84 (383)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~GVl~i~~s~fl~ 84 (383)
++|++-+|++++. --...|+.++++.+.+++.+++-=.++..-..+ +.=+|.+++..+++...+.
T Consensus 20 ~le~ve~rL~~~e-Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE-----NrK~~~ls~~l~~v~~LvY 84 (85)
T PF15188_consen 20 RLEAVESRLRRRE-LSPEARRSLEKELNELKEKLENNEKELKLLRKE-----NRKSMLLSVALFFVCFLVY 84 (85)
T ss_pred HHHHHHHHHcccC-CChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHc
Confidence 4445555554422 112233446666666666554332222221111 3447888887777666543
No 22
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=54.84 E-value=75 Score=29.38 Aligned_cols=48 Identities=4% Similarity=0.218 Sum_probs=24.5
Q ss_pred cccCCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016770 9 ETNGDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAK 56 (383)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 56 (383)
..+++.++++++.+.+=..+-...+....+-...++++...+..||+.
T Consensus 83 ~~~~~~l~~l~~~~~~~~p~~~~~~~~~~~~l~~l~~l~~~R~~Rl~~ 130 (209)
T PF14023_consen 83 PEASDALDRLWDALRALEPQTDAQEALQAEALSALNDLIDARRTRLSQ 130 (209)
T ss_pred hhhHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777777765422111112222333445666666666666654
No 23
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=54.20 E-value=1.2e+02 Score=24.78 Aligned_cols=69 Identities=9% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhh------hhhhhHHHHHHHHHHHHHH
Q 016770 12 GDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKE---MLSKQAVKIAKQAEEHE------RFINKVTHLLGVLGFGGFC 81 (383)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~------r~~dKvsF~~GVl~i~~s~ 81 (383)
.+++.+.++.|.+..++...+-+.|+...+.++. .....-..+. ..++.+ ...||+-..+|++-+++++
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~-~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v 84 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLK-KSRKLLKKLERRDKTDRILIFFAFLFFLLVV 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3578999999988887777777777666555443 2222111221 122221 1447777666665555444
No 24
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=53.08 E-value=1.7e+02 Score=29.62 Aligned_cols=9 Identities=33% Similarity=1.387 Sum_probs=5.2
Q ss_pred hhhheeccc
Q 016770 107 WIYYRFKKW 115 (383)
Q Consensus 107 ~y~Y~k~~~ 115 (383)
++..|+|||
T Consensus 307 ~~~f~rk~W 315 (316)
T PRK11085 307 YLYFKRKNW 315 (316)
T ss_pred HHHHHHccc
Confidence 334666676
No 25
>PTZ00046 rifin; Provisional
Probab=51.38 E-value=39 Score=35.03 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=40.4
Q ss_pred ccccCCchHHHHHHHhhh-hHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016770 8 EETNGDSFGKVKQRFKDR-SQKVVQTKAIMSKKAVQTKEMLSKQAVKI 54 (383)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 54 (383)
+-.||.+..+|.+.|.+| ++.++.=+|++.+++.+-||.-.|++|+|
T Consensus 50 nYDNDPeMK~Vme~F~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKI 97 (358)
T PTZ00046 50 NYDNDPEMKSVMENFDRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKI 97 (358)
T ss_pred CCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 556889999999999885 46677777889999999999999999988
No 26
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=50.00 E-value=96 Score=24.18 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=35.2
Q ss_pred CCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016770 12 GDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEH 61 (383)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 61 (383)
.|+++.+.+|+++..+-...-.+ .-+++..+.+.-++.+.+++++....
T Consensus 8 ~~g~~~l~~~~~~~~~~~~~l~~-~~keRa~lE~~Yak~L~kl~~~~~~~ 56 (91)
T PF00611_consen 8 WDGFEVLFKRLKQGIKLLEELAS-FFKERASLEEEYAKSLQKLAKKFKKK 56 (91)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46999999999997754444444 44555567777888888887766654
No 27
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.69 E-value=29 Score=30.55 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=34.5
Q ss_pred ccccccCCchHHHHHHHhhh----------hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016770 6 TVEETNGDSFGKVKQRFKDR----------SQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEE 60 (383)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 60 (383)
..+..|+++.|.+++|++.= ++-.+|.-+.++-..+.++..|++-+.+...-++.
T Consensus 29 ~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~ 93 (118)
T KOG3385|consen 29 SLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR 93 (118)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc
Confidence 34567888999999998651 11122333445666667777777777766555544
No 28
>PHA01750 hypothetical protein
Probab=49.09 E-value=69 Score=25.75 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhHHHHhhH-HHHHHHHHHHH
Q 016770 16 GKVKQRFKDRSQKVVQTK-AIMSKKAVQTK 44 (383)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 44 (383)
-|+|+-+||-.|+..+.. +.|..+...+|
T Consensus 26 lKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 26 LKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999776665543 22444444444
No 29
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=47.45 E-value=43 Score=34.63 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=40.6
Q ss_pred cccccCCchHHHHHHHhhh-hHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016770 7 VEETNGDSFGKVKQRFKDR-SQKVVQTKAIMSKKAVQTKEMLSKQAVKI 54 (383)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 54 (383)
.+-.||.+..+|.+.|.+| ++.++.=+|++.+++.+-||.-.|++|+|
T Consensus 52 ~nYDNDPeMK~Vm~nF~rqTsQRF~EYdERM~~kRqKcKeqCDKeIQKI 100 (353)
T TIGR01477 52 SNYDNDPEMKSVMEQFDRQTSQRFEEYDERMQEKRQKCKEQCDKEIQKI 100 (353)
T ss_pred ccCCCcHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhhHHhhchHHHHH
Confidence 3556889999999999885 45677777889999999999999999988
No 30
>PHA00448 hypothetical protein
Probab=44.31 E-value=81 Score=25.34 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=26.1
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhh
Q 016770 20 QRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQ---AVKIAKQAEEHERF 64 (383)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~r~ 64 (383)
+|++|.+++-.+.-..|.++.+.+.+--+.- +.+|+-++....+|
T Consensus 21 krl~~~Ar~~A~~A~~lakqs~~l~~aA~~~~~~AAriAakAq~l~kF 68 (70)
T PHA00448 21 KRLNDKARKDATRARRLAKQSRELSDAASAGVTEAARIAAKAQQLSKF 68 (70)
T ss_pred HHhhHHHHHhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 6777766666555555777777666554433 33555555444443
No 31
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=43.33 E-value=57 Score=33.14 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.3
Q ss_pred ccCCchHHHHHHHhh
Q 016770 10 TNGDSFGKVKQRFKD 24 (383)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (383)
-+|+..+|||+||-.
T Consensus 177 KSD~HMqKVr~~Li~ 191 (328)
T KOG3080|consen 177 KSDEHMQKVRQRLIK 191 (328)
T ss_pred hhHHHHHHHHHHHHH
Confidence 368899999999944
No 32
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=42.49 E-value=1.7e+02 Score=22.99 Aligned_cols=9 Identities=0% Similarity=0.541 Sum_probs=3.7
Q ss_pred hHHHHHHHh
Q 016770 15 FGKVKQRFK 23 (383)
Q Consensus 15 ~~~~~~~~~ 23 (383)
+++++.|++
T Consensus 8 l~~ie~~l~ 16 (71)
T PF10779_consen 8 LNRIETKLD 16 (71)
T ss_pred HHHHHHHHH
Confidence 334444443
No 33
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.42 E-value=55 Score=32.58 Aligned_cols=49 Identities=16% Similarity=0.311 Sum_probs=35.7
Q ss_pred CCchHHHHHHHhhhhHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016770 12 GDSFGKVKQRFKDRSQKVVQTKAI---MSKKAVQTKEMLSKQAVKIAKQAEE 60 (383)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~ 60 (383)
+.|.+.+..+..+..+++.++++. ++++...+++.+..|=..+.+|+|-
T Consensus 58 ~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 58 DNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888855 6667777777777776677666654
No 34
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=41.96 E-value=1.4e+02 Score=31.46 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=51.9
Q ss_pred cccCCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHhccc
Q 016770 9 ETNGDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEH-ERFINKVTHLLGVLGFGGFCFLLGAR 87 (383)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~r~~dKvsF~~GVl~i~~s~fl~G~~ 87 (383)
+-+.||+.|+++|...-+++|.+|+|+.++-...+.+-...-+...+..-++- ..=.+.+-|..+|+.=+=...=+.+.
T Consensus 173 Svspeq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v~~hldl~~~ 252 (472)
T KOG2856|consen 173 SVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKVQRHLDLSRN 252 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34568999999999888889999999988766666543332222222211111 01125677888887665555444444
Q ss_pred CchhHHH
Q 016770 88 PHDIHYV 94 (383)
Q Consensus 88 Pe~~~~~ 94 (383)
-.+-.++
T Consensus 253 ~~~~~ly 259 (472)
T KOG2856|consen 253 SSYSGLY 259 (472)
T ss_pred cchHHHH
Confidence 4444443
No 35
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=40.97 E-value=1.7e+02 Score=27.75 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHhhhhhhhhhh--heecccchhhhchhHHHHHHHHH
Q 016770 73 GVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIY--YRFKKWHYYLLDFCYYANTIFLV 132 (383)
Q Consensus 73 GVl~i~~s~fl~G~~Pe~~~~~Yti~~~~lmPiR~y~--Y~k~~~HYFLlDfCYfvN~l~l~ 132 (383)
....+++.|+++|..+|.+ +..+.++++|=+. ||.+.+ =-|+..+.+.++
T Consensus 49 k~i~il~i~~i~g~~~~tl-----i~~l~f~~lR~~aGG~Ha~s~-----~~C~I~S~iifv 100 (210)
T PRK01100 49 KFAIVYLIALVTGLLLQTV-----TVHLSFLWLRRYSFGLHATNS-----INCTLISLTMFV 100 (210)
T ss_pred HHHHHHHHHHHHChHHHHH-----HHHHHHHHHHhccCceecCCC-----cHHHHHHHHHHH
Confidence 4445567789999988854 4557888999777 676654 358887766554
No 36
>COG1422 Predicted membrane protein [Function unknown]
Probab=39.45 E-value=1.3e+02 Score=28.84 Aligned_cols=24 Identities=4% Similarity=0.250 Sum_probs=17.6
Q ss_pred cCCchHHHHHHHhhhhHHHHhhHH
Q 016770 11 NGDSFGKVKQRFKDRSQKVVQTKA 34 (383)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~ 34 (383)
+-|-.+++|+++++=.|+.+..+|
T Consensus 70 D~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 70 DQEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999886666666654
No 37
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=39.43 E-value=1.2e+02 Score=28.95 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=48.6
Q ss_pred CCchHHHHHH-HhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 016770 12 GDSFGKVKQR-FKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLGVLGF 77 (383)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~GVl~i 77 (383)
-++++++-+| -+|.+ ..-+-+.+.-+...+|..++|-+.++-++.++.+.+.||.+-..-+..+
T Consensus 111 ~~~~d~~~e~~y~d~s--~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~ 175 (190)
T COG5143 111 RVNIDKVIEKGYRDPS--IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKM 175 (190)
T ss_pred hhhHHHHHHhhcCCch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 4578888777 55533 3334566888888999999999999999999988899988876655443
No 38
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=38.88 E-value=1.7e+02 Score=26.10 Aligned_cols=39 Identities=8% Similarity=0.230 Sum_probs=20.0
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016770 17 KVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIA 55 (383)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 55 (383)
||+..|+.-++-+......|.++.+++...+++-...+.
T Consensus 35 R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~ 73 (131)
T PF10158_consen 35 RYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMV 73 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566555555554444455555555554444444443
No 39
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=38.45 E-value=1.8e+02 Score=26.84 Aligned_cols=9 Identities=33% Similarity=0.493 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 016770 66 NKVTHLLGV 74 (383)
Q Consensus 66 dKvsF~~GV 74 (383)
|.|+|.+|.
T Consensus 123 EPVTYfv~~ 131 (180)
T PF04678_consen 123 EPVTYFVGY 131 (180)
T ss_pred hhHHHHHhH
Confidence 334444333
No 40
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=37.03 E-value=2.6e+02 Score=26.26 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=38.9
Q ss_pred hHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 016770 15 FGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLGVLGFGGFCFL 83 (383)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~GVl~i~~s~fl 83 (383)
++....|+.+. +.++..+|+.+.++ +.+++.++++...+.-.+++|.++.-+=|.-+--.|+
T Consensus 107 L~~tf~rL~~~---Vd~~~~eL~~eI~~----L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL 168 (171)
T PF04799_consen 107 LSSTFARLCQQ---VDQTKNELEDEIKQ----LEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQYL 168 (171)
T ss_dssp ---HHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555443 34445556655554 4455567777777777889999999888887766664
No 41
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.69 E-value=2e+02 Score=25.55 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=29.9
Q ss_pred CchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 016770 13 DSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVT 69 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvs 69 (383)
-|+|.+-..+.+-+++..+.-+.++++.++.+++...--..+....+...+..+++.
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 366777666666444444444556666666665543333344444444444444443
No 42
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=35.95 E-value=98 Score=30.77 Aligned_cols=22 Identities=14% Similarity=0.406 Sum_probs=16.2
Q ss_pred cCCchHHHHHHHhhhhHHHHhh
Q 016770 11 NGDSFGKVKQRFKDRSQKVVQT 32 (383)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~ 32 (383)
.|++.+|||++|.+..+.+..+
T Consensus 116 SD~HM~KVr~kLl~~~~~ie~~ 137 (271)
T PF05890_consen 116 SDEHMEKVRQKLLKEQKRIEAS 137 (271)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999998755444433
No 43
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=35.67 E-value=59 Score=29.38 Aligned_cols=53 Identities=25% Similarity=0.533 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhcccCchhHHHHHHHHhhhhhhhhhh--heecccchhhhchhHHHHHHHHH
Q 016770 70 HLLGVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIY--YRFKKWHYYLLDFCYYANTIFLV 132 (383)
Q Consensus 70 F~~GVl~i~~s~fl~G~~Pe~~~~~Yti~~~~lmPiR~y~--Y~k~~~HYFLlDfCYfvN~l~l~ 132 (383)
-.+..+.+++.|+++|..||.+ +.++.++|+|-+. ||-+.+ --|+....+..+
T Consensus 34 ~li~~~~~l~i~~~~g~~~~~l-----i~l~~f~~lR~~sGG~Ha~t~-----~~C~i~s~~~~~ 88 (185)
T PF04647_consen 34 NLIKIIIILLIGLLLGMFPETL-----IFLLSFIPLRSFSGGYHAKTF-----FRCFIFSVLIFI 88 (185)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHHhcCCceeCCCC-----hHHHHHHHHHHH
Confidence 3445566778889999999853 5568899999777 666643 357776665544
No 44
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.03 E-value=3.2e+02 Score=24.14 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=17.4
Q ss_pred chHHHHHHHhhhhHHHHhhHHHHHHHH
Q 016770 14 SFGKVKQRFKDRSQKVVQTKAIMSKKA 40 (383)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (383)
|.|.+++=|++-..|+....|+|+..-
T Consensus 37 QvdeVv~IMr~NV~KVlER~ekL~~L~ 63 (116)
T KOG0860|consen 37 QVDEVVDIMRENVEKVLERGEKLDELD 63 (116)
T ss_pred HHHHHHHHHHHhHHHHHHhcchHHHHH
Confidence 556666667777777777766654433
No 45
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=34.76 E-value=51 Score=25.59 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016770 32 TKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFIN 66 (383)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~d 66 (383)
+++++.++..+++..+.....++++..++.+.+.+
T Consensus 3 ~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~ 37 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELERERIKVSKACKELIEYCE 37 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc
Confidence 44667777788888887766677887777666554
No 46
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=34.23 E-value=21 Score=29.88 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=14.4
Q ss_pred hhccCceeeEEechhhhHHHHHh
Q 016770 328 AIWNGGSFLLEVMPKQVILKEKK 350 (383)
Q Consensus 328 svwNGAtyYidvFgkry~~ke~~ 350 (383)
+--|||+|.+||=|.+-++.+++
T Consensus 41 tf~ngatfqvevpgsqhi~sqkk 63 (102)
T PF01376_consen 41 TFKNGATFQVEVPGSQHIDSQKK 63 (102)
T ss_dssp EETTS-EEEE--SSTTSTTTHHH
T ss_pred EecCCcEEEEecCCccchhhhHH
Confidence 44699999999999776544443
No 47
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.69 E-value=1.9e+02 Score=25.49 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=22.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 016770 28 KVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKV 68 (383)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKv 68 (383)
+....+|.+.|..+.++.+-++-.+.+-|+..+.+++-+++
T Consensus 109 ~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 109 KLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444555555555555555556666666666666654
No 48
>PRK10132 hypothetical protein; Provisional
Probab=32.63 E-value=3.3e+02 Score=23.51 Aligned_cols=21 Identities=5% Similarity=0.029 Sum_probs=10.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 016770 28 KVVQTKAIMSKKAVQTKEMLS 48 (383)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~ 48 (383)
+..+.|++++...+++++.+.
T Consensus 42 ~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 42 EAEAARRKAQALLKETRARMH 62 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555554
No 49
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=32.56 E-value=2.4e+02 Score=22.00 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=20.2
Q ss_pred CCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016770 12 GDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKI 54 (383)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 54 (383)
.++=++.|++++++.++.... ++....++++.+.++....
T Consensus 21 P~sG~e~R~~l~~~~~~~~~~---~~~~~~~~~~~~k~~~~~~ 60 (74)
T PF12732_consen 21 PKSGKETREKLKDKAEDLKDK---AKDLYEEAKEKVKEKAEET 60 (74)
T ss_pred CCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 345567788888876544333 3333334344344444443
No 50
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=32.54 E-value=2.1e+02 Score=26.20 Aligned_cols=7 Identities=0% Similarity=0.097 Sum_probs=2.5
Q ss_pred hHHHHHH
Q 016770 67 KVTHLLG 73 (383)
Q Consensus 67 KvsF~~G 73 (383)
.+....+
T Consensus 112 ~f~~a~~ 118 (157)
T PF14235_consen 112 RFDLAVA 118 (157)
T ss_pred hhHHHHH
Confidence 3333333
No 51
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.63 E-value=1.3e+02 Score=32.62 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=19.7
Q ss_pred chHHHHHHHhhhhHHHHhhHHHHHH
Q 016770 14 SFGKVKQRFKDRSQKVVQTKAIMSK 38 (383)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (383)
-||.++||+|-+.+.+.+-+++|++
T Consensus 335 GF~dL~~R~K~Q~q~~~~~r~ri~~ 359 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVKQHRIRINA 359 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999988888877765443
No 52
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.57 E-value=2.3e+02 Score=22.20 Aligned_cols=34 Identities=6% Similarity=0.168 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 016770 36 MSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVT 69 (383)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvs 69 (383)
.++-..++++.+.+|...|++-.++...+.+|+.
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455558888888888888887777777777664
No 53
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.41 E-value=1.2e+02 Score=30.83 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=24.8
Q ss_pred CchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016770 13 DSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIA 55 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 55 (383)
+++|+.|+-|.|...|+.++-..|..+..+..+.+.+|-.+++
T Consensus 118 ~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els 160 (300)
T KOG2629|consen 118 DKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELS 160 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666655555555555555555544443
No 54
>PRK14011 prefoldin subunit alpha; Provisional
Probab=31.19 E-value=1.3e+02 Score=27.23 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=23.1
Q ss_pred cccccCCchHHHHHHHhhhhHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016770 7 VEETNGDSFGKVKQRFKDRSQKVVQTK---AIMSKKAVQTKEMLSKQAVKIAKQAE 59 (383)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~ 59 (383)
|+-+.+|..+.+++|.++=.+...+.. +.+.++.+.+...|.+.++.+.+++.
T Consensus 82 VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~ 137 (144)
T PRK14011 82 LEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQA 137 (144)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444555555555544222222222 22334444444455555555554443
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.50 E-value=2.9e+02 Score=26.39 Aligned_cols=7 Identities=14% Similarity=-0.078 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 016770 70 HLLGVLG 76 (383)
Q Consensus 70 F~~GVl~ 76 (383)
|..|-+.
T Consensus 174 f~~Gg~v 180 (206)
T PRK10884 174 FMYGGGV 180 (206)
T ss_pred HHHchHH
Confidence 5555433
No 56
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.40 E-value=1.3e+02 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhcccCchhHHHHH
Q 016770 69 THLLGVLGFGGFCFLLGARPHDIHYVYC 96 (383)
Q Consensus 69 sF~~GVl~i~~s~fl~G~~Pe~~~~~Yt 96 (383)
.|+-|++.=.+.|+++-++-..=||.-.
T Consensus 51 efIsGilVGa~iG~llD~~agTsPwglI 78 (116)
T COG5336 51 EFISGILVGAGIGWLLDKFAGTSPWGLI 78 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 4888888777777766555444444333
No 57
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=30.30 E-value=61 Score=27.74 Aligned_cols=7 Identities=57% Similarity=1.156 Sum_probs=3.2
Q ss_pred cCCchHH
Q 016770 11 NGDSFGK 17 (383)
Q Consensus 11 ~~~~~~~ 17 (383)
+++.|.+
T Consensus 50 ag~~f~k 56 (100)
T PF04568_consen 50 AGGAFGK 56 (100)
T ss_dssp CCHHHHH
T ss_pred hCCccch
Confidence 3445544
No 58
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=29.92 E-value=2.6e+02 Score=27.13 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=31.9
Q ss_pred CchHHHHHHHhhhhHHHHhhH----HHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhh-hh
Q 016770 13 DSFGKVKQRFKDRSQKVVQTK----AIMSK---KAVQTKEMLSKQAVKIAKQAEEHERFI-NK 67 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~r~~-dK 67 (383)
++.|.+|+++..-.-+-+++| |.+.| +..++++.+.+-++.=+...++..+++ ++
T Consensus 1 ~s~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~ 63 (214)
T PF07795_consen 1 ESMEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEK 63 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888999876555555533 33433 334566666666655555555555544 44
No 59
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.22 E-value=1.6e+02 Score=30.48 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=24.8
Q ss_pred cCCchHHHHHHHhhhhHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016770 11 NGDSFGKVKQRFKDRSQKVVQTKAIMSK--KAVQTKEMLSKQAVKIAKQAEEHERF 64 (383)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~r~ 64 (383)
.++.++.+++++.+-.++..+.++++++ +.++-.+.+.+|.....|+.++.+.+
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566555555555555554433 11122223444444555544444333
No 60
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=29.14 E-value=2.4e+02 Score=25.24 Aligned_cols=22 Identities=18% Similarity=-0.002 Sum_probs=11.6
Q ss_pred hHHHHHHHHHH--------HHHHHHhcccC
Q 016770 67 KVTHLLGVLGF--------GGFCFLLGARP 88 (383)
Q Consensus 67 KvsF~~GVl~i--------~~s~fl~G~~P 88 (383)
|-.+..+|.++ +++|++.++-|
T Consensus 91 K~~~~~~v~~i~i~~wi~~~f~g~vv~klP 120 (168)
T PF01956_consen 91 KPMFVTMVPQIPIFYWINYFFSGFVVAKLP 120 (168)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhcceEEee
Confidence 44555555544 34455555666
No 61
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=29.08 E-value=1.3e+02 Score=30.02 Aligned_cols=53 Identities=9% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016770 12 GDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFI 65 (383)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~ 65 (383)
+|+++++++|+++..++..+..+.|.++..++++ ..++++.+.+.+....+.+
T Consensus 12 ~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~-~~~~~~~l~~~~~~L~~aL 64 (304)
T PF02646_consen 12 KEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSE-ANGEIQQLSQEASNLTSAL 64 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH
No 62
>PRK00846 hypothetical protein; Provisional
Probab=29.07 E-value=3.2e+02 Score=22.34 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 016770 37 SKKAVQTKEMLSKQAVKIAKQAEEHERFINKVT 69 (383)
Q Consensus 37 ~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvs 69 (383)
+.-...+++.+.++...|++-.++...+.||+-
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447788888888888887777777777654
No 63
>PRK12765 flagellar capping protein; Provisional
Probab=28.90 E-value=1.4e+02 Score=32.98 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=35.2
Q ss_pred chHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016770 14 SFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERF 64 (383)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~ 64 (383)
.|+...+.++++.|...+.+|.++++.+...+++.+|..+.+....+...+
T Consensus 529 ~l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf~alD~~i~~l~~t 579 (595)
T PRK12765 529 SLTKYDESLTNEIKSLTTSKESTQELIDTKYETMANKWLQYDSIIAKLEQQ 579 (595)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 566666666776666666668888888888888888877776655554333
No 64
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=28.90 E-value=1.6e+02 Score=25.68 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=28.0
Q ss_pred ccCCchHHHHHH-HhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 016770 10 TNGDSFGKVKQR-FKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLGVLGFG 78 (383)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~GVl~i~ 78 (383)
..++++-+...+ +.++.+..+..++.++++..+....+.+...- .+++-.++=.+|+++.+
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------l~~i~~~aP~lGLlGTv 74 (139)
T PF01618_consen 13 AGDNPFLRIGLAGLLVSGKSPEEIREAMEEALEREEERLERNLSI--------LRTIASIAPLLGLLGTV 74 (139)
T ss_pred hhhcHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHcchHH--------HHHHHHHHHHHHHHHHH
Confidence 334444444444 44444444444454554444444444333222 23334555566766643
No 65
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.74 E-value=1.2e+02 Score=28.97 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhhhhhhhH
Q 016770 51 AVKIAKQAEEHERFINKV 68 (383)
Q Consensus 51 ~~~i~~~~~~~~r~~dKv 68 (383)
..+|+++..+-+.-++|=
T Consensus 148 ~~~~~~~~~~~~~~~~~~ 165 (197)
T PRK12585 148 EEKIDEREDQEEQERERE 165 (197)
T ss_pred HHHHhhhhhhHHHHHHHH
Confidence 346776655555444443
No 66
>PRK14159 heat shock protein GrpE; Provisional
Probab=28.39 E-value=2.1e+02 Score=26.72 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCccccccccCCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016770 2 LSDETVEETNGDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKI 54 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 54 (383)
|.||....-+|+.+++.++++.+-..+..+..++.+ ..+.+..++...+
T Consensus 19 ~~~~~~~~~~~~~i~~l~~e~~elkd~~lR~~Adfe----N~rkR~~rE~e~~ 67 (176)
T PRK14159 19 LQDENLQNIEDVEQNKLQKDYDELKDKYMRANAEFE----NIKKRMEKEKLSA 67 (176)
T ss_pred hhhhhHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 345555566777778888777776555555555444 4444444444444
No 67
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=26.48 E-value=2.1e+02 Score=25.96 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016770 32 TKAIMSKKAVQTKEMLSKQAVKIAKQAEE 60 (383)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 60 (383)
+.++..+..++++++..+...+|+...++
T Consensus 131 s~D~~~~~~~~iq~l~~~~~~~id~~~~~ 159 (165)
T PF01765_consen 131 SEDDIKKLEKEIQKLTDKYIKKIDELLKK 159 (165)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555444333
No 68
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=26.32 E-value=2.1e+02 Score=25.29 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=13.3
Q ss_pred CchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHH
Q 016770 13 DSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEM 46 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (383)
-.|+.+++|++.+.+.+.+-++.|+.-.++++++
T Consensus 30 ~GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L 63 (141)
T PF13874_consen 30 IGFEDLKKRVEAQEEEIAQHRERLKEINDKLEEL 63 (141)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999998888888888777666666655
No 69
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.87 E-value=3.5e+02 Score=24.54 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 016770 39 KAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLGV 74 (383)
Q Consensus 39 ~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~GV 74 (383)
++.+++..++|--.++++..++...-..++.-.++.
T Consensus 67 kwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 67 KWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554445544444433333444444443
No 70
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.84 E-value=5.2e+02 Score=24.60 Aligned_cols=34 Identities=6% Similarity=0.004 Sum_probs=25.8
Q ss_pred cCCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHH
Q 016770 11 NGDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTK 44 (383)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (383)
.++++||+++|++.....+.+++++.....++++
T Consensus 151 ~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~ 184 (239)
T cd07647 151 QPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLE 184 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999988888888887666644443
No 71
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=25.09 E-value=70 Score=35.99 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=0.0
Q ss_pred CchHHHHHHHhhhhHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 016770 13 DSFGKVKQRFKDRSQKVVQTKAIMSK-------KAVQTKEMLSKQAVKIAKQAEEHERFINKVTH 70 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF 70 (383)
.+++++|+|++.+..+..+.++.-.+ |...++++|.++...|+....+..+..++++|
T Consensus 653 ~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~~ 717 (717)
T PF10168_consen 653 ASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIVNF 717 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
No 72
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=23.88 E-value=87 Score=29.07 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016770 33 KAIMSKKAVQTKEMLSKQAV 52 (383)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ 52 (383)
++.+++|+++.-..+.+|..
T Consensus 92 kDeie~qmdrivkemrrQle 111 (173)
T PF01452_consen 92 KDEIEKQMDRIVKEMRRQLE 111 (173)
T ss_dssp ---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333333
No 73
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=23.58 E-value=2.1e+02 Score=26.38 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 016770 36 MSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTH 70 (383)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF 70 (383)
+..+-+.++++..+--..+...|.+.||+..=+++
T Consensus 57 lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsW 91 (156)
T PF08372_consen 57 LRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSW 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444455544433222345555555555544443
No 74
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=23.07 E-value=3.3e+02 Score=20.99 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016770 34 AIMSKKAVQTKEMLSKQAVKIAK 56 (383)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~i~~ 56 (383)
..|+.+.+.+.+++++++++|-+
T Consensus 18 ~kLd~Kk~Eil~~ln~EY~kiLk 40 (56)
T PF08112_consen 18 SKLDEKKSEILSNLNMEYEKILK 40 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777788888888865
No 75
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=23.03 E-value=6.8e+02 Score=24.23 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=45.4
Q ss_pred CCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHhcccCc
Q 016770 12 GDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAV-KIAKQAEEHER-FINKVTHLLGVLGFGGFCFLLGARPH 89 (383)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~r-~~dKvsF~~GVl~i~~s~fl~G~~Pe 89 (383)
.+++||+++|+..+.+.+.+++++.....+++++.-.+ +. ..+..-+.... =-+.+.|+-..+.-..-+.=+...|+
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~-y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l~~~~~~~ 245 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPR-YMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRHLDLSTNPS 245 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 36899999999999999999998877777766655432 32 33221111111 01355565555544444433444444
Q ss_pred h
Q 016770 90 D 90 (383)
Q Consensus 90 ~ 90 (383)
.
T Consensus 246 ~ 246 (258)
T cd07655 246 F 246 (258)
T ss_pred H
Confidence 3
No 76
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.78 E-value=3.5e+02 Score=27.56 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=27.7
Q ss_pred cccCCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHH
Q 016770 9 ETNGDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEML 47 (383)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (383)
..=||++.++.+++++-.+.+.+.++.+..+.+.+-.-|
T Consensus 125 ~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L 163 (300)
T KOG2629|consen 125 RQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRAL 163 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999998877778887777766655443333
No 77
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.77 E-value=1.3e+02 Score=29.00 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 016770 36 MSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLG 73 (383)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~G 73 (383)
.+-|.++.|.++.+-+.++..+-++.|=+.||-...-|
T Consensus 130 vkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~ 167 (217)
T KOG0859|consen 130 VKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 167 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhh
Confidence 34455566666655555555555555557787665543
No 78
>PRK04406 hypothetical protein; Provisional
Probab=22.71 E-value=4.1e+02 Score=21.38 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 016770 36 MSKKAVQTKEMLSKQAVKIAKQAEEHERFINKV 68 (383)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKv 68 (383)
.++-..++++.+.+|-..|++-.++...+.+++
T Consensus 23 QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 23 QEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455777888888877777666665565655
No 79
>COG4035 Predicted membrane protein [Function unknown]
Probab=22.53 E-value=82 Score=26.97 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=23.2
Q ss_pred hhhhhhhHHHHHHHHH--------------------HHHHHHHhcccCch
Q 016770 61 HERFINKVTHLLGVLG--------------------FGGFCFLLGARPHD 90 (383)
Q Consensus 61 ~~r~~dKvsF~~GVl~--------------------i~~s~fl~G~~Pe~ 90 (383)
.||-+|+++-++.|++ +++.+|++|++|.+
T Consensus 37 ve~~iDp~aL~iaV~GwtiL~ns~~~~v~~~~~~ag~flig~v~gMRPGY 86 (108)
T COG4035 37 VEKGIDPFALAIAVFGWTILINSWMRSVPVPLYMAGCFLIGFVLGMRPGY 86 (108)
T ss_pred hhcCCChHHHHHHHhcceeeeeecccCCchHHHHHHHHHHHHhhccCCCC
Confidence 5667888888888763 56778888999875
No 80
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=22.46 E-value=2.4e+02 Score=26.09 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=22.2
Q ss_pred hHHHHHHHhhhhHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016770 15 FGKVKQRFKDRSQKVVQ----TKAIMSKKAVQTKEMLSKQAVKIAKQAEEH 61 (383)
Q Consensus 15 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 61 (383)
+..+|+...++.||..+ +.++..+..++++++..+-..+|++..+..
T Consensus 124 iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~~~K 174 (179)
T cd00520 124 IRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSK 174 (179)
T ss_pred HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 334444455555555555555555544443
No 81
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.92 E-value=1.6e+02 Score=26.79 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=25.1
Q ss_pred chHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhhh
Q 016770 14 SFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQ---AVKIAKQAEEHERFINK 67 (383)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~r~~dK 67 (383)
+++++.+++.++ ....|++|-.+..+++.+++.. -.+|.+.+.|...+++|
T Consensus 51 ~~q~I~~~f~~~---t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 51 AWQKIHNDFYAQ---TSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQS 104 (143)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 455555555443 4555555555555666555432 22444444444444433
No 82
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=21.84 E-value=1.8e+02 Score=26.76 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHHHhhhhhhhhhh--heecccchhhhchhHHHHHHHHH
Q 016770 72 LGVLGFGGFCFLLGARPHDIHYVYCLFYIIFVPLRWIY--YRFKKWHYYLLDFCYYANTIFLV 132 (383)
Q Consensus 72 ~GVl~i~~s~fl~G~~Pe~~~~~Yti~~~~lmPiR~y~--Y~k~~~HYFLlDfCYfvN~l~l~ 132 (383)
+.++.+++.|+++|..||.+ +..+.++++|=+. ||.+.+- -|+....+..+
T Consensus 36 ~~~~~~l~i~~~~g~~~~~l-----i~~~~f~~lR~~aGG~Ha~t~~-----~C~i~S~~~~~ 88 (184)
T smart00793 36 IKLIIVYGVALLLGVFLETL-----IVHLSFLFLRRFAGGAHAKSSL-----LCTLLSIIIFV 88 (184)
T ss_pred HHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhhCCceecCCcH-----HHHHHHHHHHH
Confidence 44555667789999988854 5558889999877 7776532 48877765443
No 83
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.81 E-value=1.5e+02 Score=27.04 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=24.9
Q ss_pred ccCCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016770 10 TNGDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKI 54 (383)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 54 (383)
.+++++|.+=.+..++..+..+..+.++++..++++.+....+++
T Consensus 39 ~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kv 83 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKV 83 (151)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceE
Confidence 445566666555555555555555556666665555554444433
No 84
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=21.64 E-value=2.9e+02 Score=24.58 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=6.4
Q ss_pred HHHHHHHhhhhhhhhhH
Q 016770 52 VKIAKQAEEHERFINKV 68 (383)
Q Consensus 52 ~~i~~~~~~~~r~~dKv 68 (383)
.++.....+.+..+|++
T Consensus 97 ~~~~~lL~~~v~~ie~L 113 (131)
T PF10158_consen 97 SRCQSLLNQTVPSIETL 113 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 85
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=21.64 E-value=6.9e+02 Score=24.64 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=49.8
Q ss_pred cCCchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHhcccC
Q 016770 11 NGDSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAV-KIAKQAEEHER-FINKVTHLLGVLGFGGFCFLLGARP 88 (383)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~r-~~dKvsF~~GVl~i~~s~fl~G~~P 88 (383)
.++++||++.|+..+.+.+.+++++......++++. ..+|. .....-++.-. =.+.+.|+-.+|...-..+=+...|
T Consensus 166 s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~-~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~~l~~~~~~ 244 (258)
T cd07680 166 TPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKT-TPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAESS 244 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccch
Confidence 467899999999999999999999888877777766 55554 22221111111 1257788877776555554443333
No 86
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=21.44 E-value=2.8e+02 Score=25.40 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 016770 38 KKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLGVLGFGG 79 (383)
Q Consensus 38 ~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~GVl~i~~ 79 (383)
|..+-+.+.|..+..+....+.+.+|..-.+-+.+|++.+++
T Consensus 128 k~i~L~~e~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIl 169 (171)
T PRK08307 128 KHIRLALEHLEREEEEAEEEQKKNEKMYKYLGFLAGLLIVIL 169 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 333444455555555555566666777777777777766543
No 87
>PRK00106 hypothetical protein; Provisional
Probab=21.25 E-value=2.9e+02 Score=30.21 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=8.3
Q ss_pred hhcceeeccccch
Q 016770 162 WRCSLVFNSVDKI 174 (383)
Q Consensus 162 WRNSLVFHSiDK~ 174 (383)
|+=+=.+||+.|+
T Consensus 376 a~~AGLLHDIGK~ 388 (535)
T PRK00106 376 ARRAGFLHDMGKA 388 (535)
T ss_pred HHHHHHHHhccCc
Confidence 3445557888777
No 88
>PRK12704 phosphodiesterase; Provisional
Probab=20.87 E-value=3e+02 Score=29.83 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=11.5
Q ss_pred HhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 016770 22 FKDRSQKVVQTKAIMSKKAVQTKEMLSKQAV 52 (383)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (383)
+.++.++..+.++.++++..++++...++..
T Consensus 112 L~~re~~Le~re~eLe~~~~~~~~~~~~~~~ 142 (520)
T PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQ 142 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344443333333333333
No 89
>PHA02132 hypothetical protein
Probab=20.46 E-value=1.1e+02 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhee
Q 016770 220 YLLTWLFLVPLGAYTLWQVLYFLIVNVL 247 (383)
Q Consensus 220 ~~~~~~~~~P~~~Y~iWQ~lY~~~i~v~ 247 (383)
++.....+.|+++|++|-++=+..+.|-
T Consensus 54 yg~ia~awlp~~~~l~~kl~ef~yikv~ 81 (86)
T PHA02132 54 YGMIAGAWLPLAIYLVCKLCEFTYIKVT 81 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeehhhhh
Confidence 3444456679999999999977666554
No 90
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.46 E-value=4.2e+02 Score=20.67 Aligned_cols=7 Identities=14% Similarity=0.629 Sum_probs=3.1
Q ss_pred HHHHHhh
Q 016770 18 VKQRFKD 24 (383)
Q Consensus 18 ~~~~~~~ 24 (383)
+++|+..
T Consensus 4 i~e~l~~ 10 (71)
T PF10779_consen 4 IKEKLNR 10 (71)
T ss_pred HHHHHHH
Confidence 4444433
No 91
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.36 E-value=2.6e+02 Score=30.24 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=6.7
Q ss_pred ceeeccccch
Q 016770 165 SLVFNSVDKI 174 (383)
Q Consensus 165 SLVFHSiDK~ 174 (383)
+=.+||+-|+
T Consensus 358 AGLLHDIGK~ 367 (514)
T TIGR03319 358 AGLLHDIGKA 367 (514)
T ss_pred HHHHHhcCcc
Confidence 5567777775
No 92
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.07 E-value=4.6e+02 Score=21.79 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 016770 49 KQAVKIAKQAEEHERFIN 66 (383)
Q Consensus 49 ~~~~~i~~~~~~~~r~~d 66 (383)
+++..|+++.++.+...+
T Consensus 66 ~~Id~Ie~~V~~LE~~v~ 83 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVY 83 (99)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555444433
Done!