Query 016770
Match_columns 383
No_of_seqs 125 out of 161
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_A Vesicle-associated memb 81.3 13 0.00044 29.7 9.7 68 14-82 13-84 (91)
2 4ev6_A Magnesium transport pro 77.0 17 0.00058 34.8 10.9 9 107-115 330-338 (339)
3 2iub_A CORA, divalent cation t 72.0 22 0.00074 34.5 10.3 26 53-78 294-319 (363)
4 1t3j_A Mitofusin 1; coiled coi 61.7 45 0.0016 27.2 8.5 51 29-83 45-95 (96)
5 3iv1_A Tumor susceptibility ge 47.7 83 0.0029 24.7 7.7 33 16-48 10-49 (78)
6 3chb_D Cholera toxin; toxin/re 42.5 8.5 0.00029 31.0 1.2 25 327-351 41-65 (104)
7 1gmj_A ATPase inhibitor; coile 41.4 36 0.0012 27.2 4.7 23 34-56 40-62 (84)
8 1sfc_A VAMP 2, protein (synapt 40.6 72 0.0025 25.6 6.6 48 12-60 29-83 (96)
9 2nps_A VAMP-4, vesicle-associa 39.6 1.2E+02 0.0039 23.0 7.3 48 13-61 15-62 (74)
10 1ltr_D ETB-R2, heat-labIle ent 31.7 14 0.00047 30.2 0.8 48 327-374 40-105 (113)
11 3b5n_A Synaptobrevin homolog 1 30.4 1.6E+02 0.0053 21.4 6.6 46 14-60 10-55 (61)
12 1n7s_C SNAP-25A; neuronal snar 27.1 2E+02 0.0069 22.1 6.9 48 13-60 5-52 (79)
13 2oxj_A Hybrid alpha/beta pepti 26.2 91 0.0031 20.9 3.9 27 22-48 6-32 (34)
14 1b44_D ETB-POL, protein (B-POL 25.9 18 0.00061 30.1 0.6 23 327-349 40-62 (129)
15 3m48_A General control protein 23.8 59 0.002 21.7 2.7 27 22-48 5-31 (33)
16 3pev_B Nucleoporin GLE1; RECA, 23.6 36 0.0012 32.8 2.3 43 12-54 9-55 (297)
17 1uo4_A General control protein 21.9 80 0.0027 21.2 3.0 27 22-48 6-32 (34)
18 3lay_A Zinc resistance-associa 21.1 1.1E+02 0.0039 27.1 4.9 15 33-47 91-105 (175)
19 3efg_A Protein SLYX homolog; x 20.6 2.4E+02 0.0082 21.7 6.1 34 36-69 26-59 (78)
20 3c3g_A Alpha/beta peptide with 20.4 1.3E+02 0.0043 20.1 3.7 27 22-48 5-31 (33)
21 1gl2_A Endobrevin; membrane pr 20.1 2.5E+02 0.0085 20.6 5.9 27 17-43 20-46 (65)
No 1
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=81.34 E-value=13 Score=29.67 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=42.5
Q ss_pred chHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--h--hhHHHHHHHHHHHHHHH
Q 016770 14 SFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERF--I--NKVTHLLGVLGFGGFCF 82 (383)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~--~--dKvsF~~GVl~i~~s~f 82 (383)
+++.+|.-|.+-.+|+.+..|+|+..-+++. .|+.+.....+++++..|- . =|...++|+..+++...
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~-~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i 84 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRAD-ALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667777777777777776666555 3455666666666665442 1 26666666666554433
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=77.04 E-value=17 Score=34.83 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=5.8
Q ss_pred hhhheeccc
Q 016770 107 WIYYRFKKW 115 (383)
Q Consensus 107 ~y~Y~k~~~ 115 (383)
++.+|||||
T Consensus 330 ~~~fkrk~W 338 (339)
T 4ev6_A 330 VYIFRRSGW 338 (339)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHcCC
Confidence 344677787
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=71.96 E-value=22 Score=34.46 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=11.6
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHH
Q 016770 53 KIAKQAEEHERFINKVTHLLGVLGFG 78 (383)
Q Consensus 53 ~i~~~~~~~~r~~dKvsF~~GVl~i~ 78 (383)
.++-+..+..+.+.-++-++-.++++
T Consensus 294 ~is~~~N~imk~LTiit~IflP~T~I 319 (363)
T 2iub_A 294 SVSNKTNEVMKVLTIIATIFMPLTFI 319 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 4
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=61.68 E-value=45 Score=27.22 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 016770 29 VVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVTHLLGVLGFGGFCFL 83 (383)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvsF~~GVl~i~~s~fl 83 (383)
|..+..+|+.+.++ |.+++.+++...++.-.+++|..+..+-|+-|-..||
T Consensus 45 Vd~t~~eL~~EI~~----L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~yL 95 (96)
T 1t3j_A 45 VDMTQKHLEEEIAR----LSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQFL 95 (96)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666554 4455677777777777799999999999999988875
No 5
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=47.72 E-value=83 Score=24.73 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=16.6
Q ss_pred HHHHHHHhhhh-------HHHHhhHHHHHHHHHHHHHHHH
Q 016770 16 GKVKQRFKDRS-------QKVVQTKAIMSKKAVQTKEMLS 48 (383)
Q Consensus 16 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 48 (383)
||+|+|+++.- +-.++|.+.|.+=..+++++++
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~ 49 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVT 49 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 57788876632 1123344445544444444443
No 6
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=42.51 E-value=8.5 Score=31.04 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=18.6
Q ss_pred hhhccCceeeEEechhhhHHHHHhh
Q 016770 327 AAIWNGGSFLLEVMPKQVILKEKKK 351 (383)
Q Consensus 327 ~svwNGAtyYidvFgkry~~ke~~k 351 (383)
.+--|||+|.+||=|.+-++.+++.
T Consensus 41 isf~ngatfqvevpgsqh~~sqk~~ 65 (104)
T 3chb_D 41 ITFKNGATFQVEVPGSQHIDSQKKA 65 (104)
T ss_dssp EECTTCCEEEECCCCTTSCHHHHHH
T ss_pred EEecCCcEEEEecCcchhhhhhhhH
Confidence 3456999999999998766555443
No 7
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=41.40 E-value=36 Score=27.21 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016770 34 AIMSKKAVQTKEMLSKQAVKIAK 56 (383)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~i~~ 56 (383)
|+|.+...++.+.++.....|..
T Consensus 40 EqL~~LKkkl~~el~~h~~ei~~ 62 (84)
T 1gmj_A 40 EQLAALKKHKENEISHHAKEIER 62 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443333333344444444433
No 8
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=40.63 E-value=72 Score=25.57 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=22.7
Q ss_pred CCchHHHHHHHhh-------hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016770 12 GDSFGKVKQRFKD-------RSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEE 60 (383)
Q Consensus 12 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 60 (383)
.|.+.++++.+.+ -.+|+.+..|+|+..-+++.+ |+.+.....+.+.+
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~-L~~~S~~F~k~A~k 83 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA-LQAGASQFETSAAK 83 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3455555555544 334444444555544444433 33444455555444
No 9
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=39.60 E-value=1.2e+02 Score=22.99 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=30.8
Q ss_pred CchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016770 13 DSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEH 61 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 61 (383)
++++.++.-|.+-.+++.+..|.|+..-+++.+ |+.+.....+.+.+.
T Consensus 15 ~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~-L~~~s~~F~~~a~~l 62 (74)
T 2nps_A 15 NQVDEVIDVMQENITKVIERGERLDELQDKSES-LSDNATAFSNRSKQL 62 (74)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 356666777777777777777777766666654 445555555555543
No 10
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=31.68 E-value=14 Score=30.25 Aligned_cols=48 Identities=23% Similarity=0.242 Sum_probs=29.8
Q ss_pred hhhccCceeeEEechhhhHHHHHhh-------hh-----------cCCCCCCCCcccccccccccc
Q 016770 327 AAIWNGGSFLLEVMPKQVILKEKKK-------AE-----------IQPAQPQRPQDQSLVLMENSI 374 (383)
Q Consensus 327 ~svwNGAtyYidvFgkry~~ke~~k-------~~-----------~~~~~~~~~~~~~~~~~~~~~ 374 (383)
.+--|||+|.+||=|.+-++.+++. ++ .-.|....|+....-.++|-+
T Consensus 40 isf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~klcvwnnktpnsiaai~~~~ly 105 (113)
T 1ltr_D 40 ITFKSGATFQVEVPGSQHIDSQKKAIERMKDTLRITYLTETKIDKLCVWNNKTPNSIAAISMEKLY 105 (113)
T ss_dssp EECTTSCEEEECCCSTTSCSHHHHHHHHHHHHHHHHHHTTCEEEEEEEETTSSSEEEEEEEEECCS
T ss_pred EEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchhheeeecCCCCchhhHhhHHhhh
Confidence 3456999999999997755444332 21 123456667766666565543
No 11
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=30.38 E-value=1.6e+02 Score=21.39 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=27.1
Q ss_pred chHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016770 14 SFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEE 60 (383)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 60 (383)
+++.++.-|.+-.+++.+..|.|+..-+++.+ |+.+.....+.+.+
T Consensus 10 ~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~-L~~~s~~F~~~a~~ 55 (61)
T 3b5n_A 10 EIDDTVGIMRDNINKVAERGERLTSIEDKADN-LAVSAQGFKRGANR 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 55666666666666777777776665555543 33444455555444
No 12
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=27.09 E-value=2e+02 Score=22.09 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=22.8
Q ss_pred CchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016770 13 DSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEE 60 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 60 (383)
++.+.++++..++.++-.++-...-+-+..++++-.+-++.+..+.++
T Consensus 5 ~~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eq 52 (79)
T 1n7s_C 5 NELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQ 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455566666655554444433334444445554444433444443333
No 13
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.23 E-value=91 Score=20.86 Aligned_cols=27 Identities=4% Similarity=0.264 Sum_probs=21.3
Q ss_pred HhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 016770 22 FKDRSQKVVQTKAIMSKKAVQTKEMLS 48 (383)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (383)
+.||+++..+-|+.|+.+-.++|++|.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 456777777888889988888888773
No 14
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=25.90 E-value=18 Score=30.14 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=17.1
Q ss_pred hhhccCceeeEEechhhhHHHHH
Q 016770 327 AAIWNGGSFLLEVMPKQVILKEK 349 (383)
Q Consensus 327 ~svwNGAtyYidvFgkry~~ke~ 349 (383)
.+--|||+|.+||=|.+-++.++
T Consensus 40 isf~ngatfqvevpgsqh~~sqk 62 (129)
T 1b44_D 40 ITFKSGATFQVEVPGSQHIDSQK 62 (129)
T ss_dssp EECTTSCEEEECCCCTTSCSTHH
T ss_pred EEecCCcEEEEecCcchhhhhhh
Confidence 34569999999999977554443
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.84 E-value=59 Score=21.66 Aligned_cols=27 Identities=4% Similarity=0.256 Sum_probs=20.2
Q ss_pred HhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 016770 22 FKDRSQKVVQTKAIMSKKAVQTKEMLS 48 (383)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (383)
+.||+++..+.|..|+.+-.++|+++.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 356777777777778888888888774
No 16
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=23.58 E-value=36 Score=32.82 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCchHHHHHHHhhhhHHH-Hh---hHHHHHHHHHHHHHHHHHHHHHH
Q 016770 12 GDSFGKVKQRFKDRSQKV-VQ---TKAIMSKKAVQTKEMLSKQAVKI 54 (383)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~i 54 (383)
+++|.+||+++++-++.+ .+ ++..+++...+.|..+.+-...|
T Consensus 9 ~~~~~~y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQL 55 (297)
T 3pev_B 9 SKMFWHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQL 55 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccc
Confidence 358999999998854444 23 35568888888888877666665
No 17
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.91 E-value=80 Score=21.16 Aligned_cols=27 Identities=11% Similarity=0.343 Sum_probs=20.2
Q ss_pred HhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 016770 22 FKDRSQKVVQTKAIMSKKAVQTKEMLS 48 (383)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (383)
+.||+++..+.|..|+.+-.++|++|.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 456777777777778888888887774
No 18
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.06 E-value=1.1e+02 Score=27.10 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 016770 33 KAIMSKKAVQTKEML 47 (383)
Q Consensus 33 ~~~~~~~~~~~~~~~ 47 (383)
++.+..+..++++.+
T Consensus 91 r~ql~akr~EL~aL~ 105 (175)
T 3lay_A 91 RQQLISKRYEYNALL 105 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 19
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.55 E-value=2.4e+02 Score=21.75 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 016770 36 MSKKAVQTKEMLSKQAVKIAKQAEEHERFINKVT 69 (383)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKvs 69 (383)
.++-..++++.+.+|...|++-.++...+.+|+.
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455558889999999999888888777777654
No 20
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.37 E-value=1.3e+02 Score=20.08 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=20.4
Q ss_pred HhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 016770 22 FKDRSQKVVQTKAIMSKKAVQTKEMLS 48 (383)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (383)
+.||+++..+-|..|+.+-.++|++|.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 456777777777778888888887763
No 21
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.15 E-value=2.5e+02 Score=20.56 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=11.4
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHHH
Q 016770 17 KVKQRFKDRSQKVVQTKAIMSKKAVQT 43 (383)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (383)
.++.-|.+-.+++.+..|.|+..-+++
T Consensus 20 evk~iM~~NI~~vL~RgekLd~L~~ks 46 (65)
T 1gl2_A 20 GVKNIMTQNVERILARGENLDHLRNKT 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333444444444444444443333
Done!