Query 016770
Match_columns 383
No_of_seqs 125 out of 161
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 03:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016770.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016770hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3chbd_ b.40.2.1 (D:) Cholera 42.0 4.1 0.0003 30.9 1.2 25 327-351 40-64 (103)
2 d1oedb_ f.36.1.1 (B:) Acetylch 37.9 5.2 0.00038 34.0 1.4 28 63-90 217-245 (250)
3 d1s96a_ c.37.1.1 (A:) Guanylat 37.5 14 0.001 30.8 4.2 35 34-68 168-202 (205)
4 d2csga1 b.82.2.12 (A:3-419) Hy 29.2 9.8 0.00072 36.1 1.9 42 13-61 14-55 (417)
5 d1oede_ f.36.1.1 (E:) Acetylch 27.1 17 0.0012 30.7 3.0 17 64-80 228-244 (260)
6 d1bg1a2 b.2.5.5 (A:322-575) ST 21.1 11 0.00083 33.5 0.5 15 153-167 149-163 (254)
7 d1oeda_ f.36.1.1 (A:) Acetylch 17.6 30 0.0022 28.6 2.5 18 64-81 195-212 (227)
8 d1oedc_ f.36.1.1 (C:) Acetylch 17.3 21 0.0015 29.9 1.4 17 63-79 227-243 (260)
9 d1urua_ a.238.1.1 (A:) Amphiph 16.7 73 0.0054 25.0 4.8 20 7-26 6-25 (217)
10 d1dd5a_ d.67.3.1 (A:) Ribosome 15.6 1.7E+02 0.012 23.8 6.9 29 33-61 149-177 (184)
No 1
>d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=42.00 E-value=4.1 Score=30.92 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=18.6
Q ss_pred hhhccCceeeEEechhhhHHHHHhh
Q 016770 327 AAIWNGGSFLLEVMPKQVILKEKKK 351 (383)
Q Consensus 327 ~svwNGAtyYidvFgkry~~ke~~k 351 (383)
.+--|||+|.+||=|.+-++.+++.
T Consensus 40 isf~ngatfqvevpgsqh~~sqk~~ 64 (103)
T d3chbd_ 40 ITFKNGATFQVEVPGSQHIDSQKKA 64 (103)
T ss_dssp EECTTCCEEEECCCCTTSCHHHHHH
T ss_pred EEecCCcEEEEecCcchhhhhhhhH
Confidence 3456999999999998766555443
No 2
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=37.89 E-value=5.2 Score=33.96 Aligned_cols=28 Identities=7% Similarity=0.034 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHhcccCch
Q 016770 63 RFINKVTHLLGVLGFG-GFCFLLGARPHD 90 (383)
Q Consensus 63 r~~dKvsF~~GVl~i~-~s~fl~G~~Pe~ 90 (383)
+-+|++.|++.++.++ .|..++...|..
T Consensus 217 ~VlDRlfl~lF~l~~vi~t~~i~l~ap~~ 245 (250)
T d1oedb_ 217 MVADRLFLYVFFVICSIGTFSIFLDASHN 245 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 3468899887665444 444555555543
No 3
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}
Probab=37.45 E-value=14 Score=30.82 Aligned_cols=35 Identities=14% Similarity=0.384 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 016770 34 AIMSKKAVQTKEMLSKQAVKIAKQAEEHERFINKV 68 (383)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~dKv 68 (383)
+++++-..++++++..+..+++++..++.++++|+
T Consensus 168 ddl~~a~~el~~iI~~e~~k~~~q~~~~~~~i~~l 202 (205)
T d1s96a_ 168 DDFDTALTDLKTIIRAERLRMSRQKQRHDALISKL 202 (205)
T ss_dssp SSHHHHHHHHHHHHHHHHTBHHHHHHHTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45777677777777666667777777777777775
No 4
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=29.22 E-value=9.8 Score=36.12 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=29.1
Q ss_pred CchHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016770 13 DSFGKVKQRFKDRSQKVVQTKAIMSKKAVQTKEMLSKQAVKIAKQAEEH 61 (383)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 61 (383)
..+..+|+.|+.+. +++++-++++.+.|.+++..|.+...+.
T Consensus 14 ~~i~~~K~~Lr~~~-------~~~~~~f~~l~~~i~~ev~eI~~l~~~G 55 (417)
T d2csga1 14 AAIRQMKQALRAQI-------GDVQAVFDRLSATIAARVAEINDLKAQG 55 (417)
T ss_dssp HHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc-------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778888887766 3366667777778888888886654433
No 5
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=27.10 E-value=17 Score=30.70 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHHHHH
Q 016770 64 FINKVTHLLGVLGFGGF 80 (383)
Q Consensus 64 ~~dKvsF~~GVl~i~~s 80 (383)
-+|++++++.++.++++
T Consensus 228 viDR~~l~vF~~~~~i~ 244 (260)
T d1oede_ 228 VIDKACFWIALLLFSIG 244 (260)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46888888777665543
No 6
>d1bg1a2 b.2.5.5 (A:322-575) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.11 E-value=11 Score=33.49 Aligned_cols=15 Identities=47% Similarity=0.822 Sum_probs=12.9
Q ss_pred CchhHHHHhhhccee
Q 016770 153 GPLAWALIVWRCSLV 167 (383)
Q Consensus 153 GPLa~AIi~WRNSLV 167 (383)
.|.|||.|+|-|++-
T Consensus 149 ~~~AwATIlWdNafs 163 (254)
T d1bg1a2 149 MPNAWASILWYNMLT 163 (254)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CcCceeEeeEccccc
Confidence 478999999999863
No 7
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=17.61 E-value=30 Score=28.60 Aligned_cols=18 Identities=11% Similarity=-0.228 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 016770 64 FINKVTHLLGVLGFGGFC 81 (383)
Q Consensus 64 ~~dKvsF~~GVl~i~~s~ 81 (383)
-+|+++|++.++.+++++
T Consensus 195 viDRi~~~~F~l~~ii~~ 212 (227)
T d1oeda_ 195 VIDHILLCVFMLICIIGT 212 (227)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478888888776655543
No 8
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=17.28 E-value=21 Score=29.88 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHHHHH
Q 016770 63 RFINKVTHLLGVLGFGG 79 (383)
Q Consensus 63 r~~dKvsF~~GVl~i~~ 79 (383)
+-+|++.|++.++.+++
T Consensus 227 ~ViDRlfl~lF~i~~vi 243 (260)
T d1oedc_ 227 QTIDRLSMFIITPVMVL 243 (260)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34688888877765444
No 9
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=16.69 E-value=73 Score=25.02 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=15.7
Q ss_pred cccccCCchHHHHHHHhhhh
Q 016770 7 VEETNGDSFGKVKQRFKDRS 26 (383)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (383)
++.|.|++||...+++++-.
T Consensus 6 ~~~T~D~~fe~~~~~~~~~e 25 (217)
T d1urua_ 6 VDRTADEIFDDHLNNFNRQQ 25 (217)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHH
Confidence 34456899999999998855
No 10
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=15.60 E-value=1.7e+02 Score=23.80 Aligned_cols=29 Identities=7% Similarity=0.016 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016770 33 KAIMSKKAVQTKEMLSKQAVKIAKQAEEH 61 (383)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 61 (383)
.++..+..++++++..+...+|+...+..
T Consensus 149 eD~~k~~~~~iq~ltd~~~~~id~~~~~K 177 (184)
T d1dd5a_ 149 EDDAKRLENEIQKLTDEFIEKLDEVFEIK 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544433
Done!