BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016771
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YNS|A Chain A, Crystal Structure Of Human Enolase-Phosphatase E1 And Its
Complex With A Substrate Analog
Length = 261
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 160/246 (65%), Gaps = 9/246 (3%)
Query: 144 IVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVA 203
I+LDIEGTTTPI+FV ++LFPY +NV ++L ++ E Q D+ LLR Q E+D +
Sbjct: 13 ILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDAH--LD 70
Query: 204 GAVPIPPGDAGK----EEVIAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGE 259
GAVPIP +++I A+V NV + DRK TALKQLQGH+WR F + ++ E
Sbjct: 71 GAVPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRMKAE 130
Query: 260 VFDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRET 319
F DV A+ KW G KVYIYSSGS AQ+L+FG+S GD+ + + G FDT +G+K E+
Sbjct: 131 FFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVES 190
Query: 320 PSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHG--FKTI 377
SY +I +S+G + ILF+TDV +EA+AA+ A + V + +RPGN L ++ + I
Sbjct: 191 ESYRKIADSIGC-STNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLI 249
Query: 378 NSFAEI 383
SF+E+
Sbjct: 250 TSFSEL 255
>pdb|1ZS9|A Chain A, Crystal Structure Of Human Enolase-Phosphatase E1
Length = 261
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 9/246 (3%)
Query: 144 IVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVA 203
I+LDIEGTTTPI+FV ++LFPY +NV ++L ++ E Q D+ LLR Q E+D +
Sbjct: 13 ILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDAH--LD 70
Query: 204 GAVPIPPGDAGK----EEVIAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGE 259
GAVPIP ++ I A+V NV DRK TALKQLQGH WR F + + E
Sbjct: 71 GAVPIPAASGNGVDDLQQXIQAVVDNVCWQXSLDRKTTALKQLQGHXWRAAFTAGRXKAE 130
Query: 260 VFDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRET 319
F DV A+ KW G KVYIYSSGS AQ+L+FG+S GD+ + + G FDT +G+K E+
Sbjct: 131 FFADVVPAVRKWREAGXKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVES 190
Query: 320 PSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHG--FKTI 377
SY +I +S+G + ILF+TDV +EA+AA+ A + V + +RPGN L ++ + I
Sbjct: 191 ESYRKIADSIGC-STNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLI 249
Query: 378 NSFAEI 383
SF+E+
Sbjct: 250 TSFSEL 255
>pdb|2G80|A Chain A, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|B Chain B, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|C Chain C, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|D Chain D, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
Length = 253
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 38/245 (15%)
Query: 145 VLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVAG 204
+LDIEGT PISFV E LFPY + V + V DT ++ + + SQ D K+
Sbjct: 35 LLDIEGTVCPISFVKETLFPYFTNKVPQL--VQQDTRDSP--VSNILSQFHIDNKE---- 86
Query: 205 AVPIPPGDAGKEEVIAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDV 264
L A++ ++ D K LKQLQG++W G+ES +++ V+ D
Sbjct: 87 ----------------QLQAHILELVAKDVKDPILKQLQGYVWAHGYESGQIKAPVYADA 130
Query: 265 PEALEKWHSLGTKVYIYSSGSRLAQRLIFG--------NSNYGDLRKYLSGFFD-TAVGN 315
+ +++ +V+IYSSGS AQ+L+FG + DL Y+ G+FD G
Sbjct: 131 IDFIKR----KKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTSGK 186
Query: 316 KRETPSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHGFK 375
K ET SY I +G K SE+LF++D E AA G+ ++ RPGN P+P+ ++
Sbjct: 187 KTETQSYANILRDIGA-KASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQ 245
Query: 376 TINSF 380
+F
Sbjct: 246 VYKNF 250
>pdb|3UM9|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
pdb|3UM9|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
Length = 230
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 261 FDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRETP 320
F DVP+AL++ + G K I S+GSR + R + GNS + +L D K
Sbjct: 98 FADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDHLIS-VDEVRLFKPHQK 156
Query: 321 SYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVV 358
Y ++L + + SEILFV+ +AT AK G V
Sbjct: 157 VYELAMDTLHLGE-SEILFVSCNSWDATGAKYFGYPVC 193
>pdb|2IRP|A Chain A, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
pdb|2IRP|B Chain B, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
Length = 208
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 47 LAKAIDAYPKAT----AVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 94
LAK ++ Y K + L+R HG+Y WG S A E ++F+ +KL
Sbjct: 152 LAKEVENYFKTSEDKYGFLIRGHGLYTWGRSXEEALIHTEALEFIFECELKL 203
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 261 FDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRETP 320
F +VP++L + G K+ I S+GS + + ++ D +L D K +
Sbjct: 97 FSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLS-VDPVQVYKPDNR 155
Query: 321 SYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGN 365
Y +LG+D+ S ILFV+ +AT A+ G R GN
Sbjct: 156 VYELAEQALGLDR-SAILFVSSNAWDATGARYFGFPTCWINRTGN 199
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 265 PEALEKWHSLGTKVYIYS---SGSRLAQRLIFGNSNYGDLRKYLSGFF-DTAVGNKRETP 320
PE L LG + YS G L + I +G L ++L FF +A+G + P
Sbjct: 89 PEVLALARDLGQRYRXYSLNNEGRDLNEYRI---RTFG-LGEFLLAFFTSSALGVXKPNP 144
Query: 321 SYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISI 361
+ + +L +P E + V D Q AA+A G V +
Sbjct: 145 AXYRLGLTLAQVRPEEAVXVDDRLQNVQAARAVGXHAVQCV 185
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 261 FDDVPEALEKWHSLGTKVYIYSSGSRLAQRLIFGNSNYGDLRKYLSGFFDTAVGNKRETP 320
F +VP++L + G K+ I S+GS + + ++ D +L D K +
Sbjct: 97 FSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLS-VDPVQVYKPDNR 155
Query: 321 SYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGN 365
Y +LG+D+ S ILFV +AT A+ G R GN
Sbjct: 156 VYELAEQALGLDR-SAILFVASNAWDATGARYFGFPTCWINRTGN 199
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 224 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 283
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 337 AKVNPMLTADKQ--GLYKSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 390
Query: 284 GSRLAQRLIFGNSNYGDLRKY 304
G R + R + ++ G+ Y
Sbjct: 391 GKRQSNRGVAPDAMCGNAVMY 411
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 251 FESNELEG----EVFDDVPEALEKWHSLGTKVYIYSSGSRL 287
FE+++L G + DD+ EA +K H+LG + + + G +L
Sbjct: 143 FEASQLSGMDELKTVDDMIEAAKKIHALGAQYVVITGGGKL 183
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 224 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 283
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 284 GSRLAQRLIFGNSNYGDLRKY 304
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMCGNAVMY 389
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 224 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 283
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 284 GSRLAQRLIFGNSNYGDLRKY 304
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMCGNAVMY 389
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 224 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 283
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 284 GSRLAQRLIFGNSNYGDLRKY 304
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMCGNAVMY 389
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 224 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 283
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 284 GSRLAQRLIFGNSNYGDLRKY 304
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMCGNAVMY 389
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 224 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 283
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 332 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 385
Query: 284 GSRLAQRLIFGNSNYGDLRKY 304
G R + R + ++ G+ Y
Sbjct: 386 GKRQSNRGVAPDAMCGNAVMY 406
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 224 ANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVYIYSS 283
A V+ M+ AD++ L + H W G++ +G VF P W+ + S+
Sbjct: 315 AKVNPMLTADKQ--GLYRSDNHAWLFGWK----KGSVFQAGPSTAMNWYYTSGSGDVKSA 368
Query: 284 GSRLAQRLIFGNSNYGDLRKY 304
G R + R + ++ G+ Y
Sbjct: 369 GKRQSNRGVAPDAMSGNAVMY 389
>pdb|1G8J|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 209 PPGDAGKEEVIAALVAN-VDAMIKADRKITALKQLQGHIWRT 249
PPG A + +IAA +AN + M + D K Q +G W+T
Sbjct: 556 PPGTAMADCLIAARIANALRDMYQKDGKAEMAAQFEGFDWKT 597
>pdb|1G8K|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|E Chain E, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|G Chain G, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 209 PPGDAGKEEVIAALVAN-VDAMIKADRKITALKQLQGHIWRT 249
PPG A + +IAA +AN + M + D K Q +G W+T
Sbjct: 556 PPGTAMADCLIAARIANALRDMYQKDGKAEMAAQFEGFDWKT 597
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 257 EGEVFDDVPEALEKWHSLGTKVYIYSSGS-RLAQRLIFGNSNYGDLRKYLSGFFDTAVGN 315
E + D E LEK S G V I S+G+ + Q + + L LS D
Sbjct: 103 ELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSA--DDLKIY 160
Query: 316 KRETPSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHGFK 375
K + Y + LGV+ P+E+ FV+ + A G V R GN P E K
Sbjct: 161 KPDPRIYQFACDRLGVN-PNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFAPLK 219
Query: 376 -TINSFAEI 383
+NS +E+
Sbjct: 220 HQVNSLSEL 228
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 257 EGEVFDDVPEALEKWHSLGTKVYIYSSGS-RLAQRLIFGNSNYGDLRKYLSGFFDTAVGN 315
E + D E LEK S G V I S+G+ + Q + + L LS D
Sbjct: 103 ELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSA--DDLKIY 160
Query: 316 KRETPSYVEITNSLGVDKPSEILFVTDVYQEATAAKAAGLEVVISIRPGNGPLPENHGFK 375
K + Y + LGV+ P+E+ FV+ + A G V R GN P E K
Sbjct: 161 KPDPRIYQFACDRLGVN-PNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFAPLK 219
Query: 376 -TINSFAEI 383
+NS +E+
Sbjct: 220 HQVNSLSEL 228
>pdb|1IKO|P Chain P, Crystal Structure Of The Murine Ephrin-B2 Ectodomain
Length = 178
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 94 LHQLGLDWSTP----NHGPTRNFKLGLGSNGNVNTSAKAV 129
L ++G D S+ NHGPTR +L G+NG +T++ V
Sbjct: 135 LMKVGQDASSAGSARNHGPTRRPELEAGTNGRSSTTSPFV 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,152,739
Number of Sequences: 62578
Number of extensions: 523672
Number of successful extensions: 1506
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 28
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)