BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016772
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 77 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 134
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+
Sbjct: 355 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 414
Query: 135 LGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPD 186
L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+
Sbjct: 415 LNTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE 474
Query: 187 WKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCV 242
WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +
Sbjct: 475 WKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---I 531
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYS 300
L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYS
Sbjct: 532 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 591
Query: 301 YDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 347
Y G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 592 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 77 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 134
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+
Sbjct: 404 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 463
Query: 135 LGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPD 186
L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+
Sbjct: 464 LNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE 523
Query: 187 WKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCV 242
WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +
Sbjct: 524 WKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---I 580
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYS 300
L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYS
Sbjct: 581 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 640
Query: 301 YDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 347
Y G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 641 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 700
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 77 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 134
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+
Sbjct: 355 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 414
Query: 135 LGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPD 186
L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+
Sbjct: 415 LNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE 474
Query: 187 WKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCV 242
WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +
Sbjct: 475 WKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---I 531
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYS 300
L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYS
Sbjct: 532 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 591
Query: 301 YDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 347
Y G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 592 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 77 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 134
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+
Sbjct: 355 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 414
Query: 135 LGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPD 186
L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+
Sbjct: 415 LNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE 474
Query: 187 WKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCV 242
WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +
Sbjct: 475 WKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---I 531
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYS 300
L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYS
Sbjct: 532 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 591
Query: 301 YDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 347
Y G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 592 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 77 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 134
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+
Sbjct: 408 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 467
Query: 135 LGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPD 186
L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+
Sbjct: 468 LNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE 527
Query: 187 WKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCV 242
WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +
Sbjct: 528 WKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---I 584
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYS 300
L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYS
Sbjct: 585 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 644
Query: 301 YDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 347
Y G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 645 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 704
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 77 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 134
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+
Sbjct: 356 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 415
Query: 135 LGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPD 186
L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+
Sbjct: 416 LNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE 475
Query: 187 WKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCV 242
WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +
Sbjct: 476 WKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---I 532
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYS 300
L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYS
Sbjct: 533 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 592
Query: 301 YDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 347
Y G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 593 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 652
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 77 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 134
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+
Sbjct: 355 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 414
Query: 135 LGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPD 186
L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+
Sbjct: 415 LNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE 474
Query: 187 WKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCV 242
WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +
Sbjct: 475 WKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---I 531
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYS 300
L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYS
Sbjct: 532 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 591
Query: 301 YDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 347
Y G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 592 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 32/300 (10%)
Query: 77 HKVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIR 134
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+
Sbjct: 526 RQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIK 585
Query: 135 LGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPD 186
L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+
Sbjct: 586 LNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPE 645
Query: 187 WKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCV 242
WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +
Sbjct: 646 WKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---I 702
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYS 300
L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYS
Sbjct: 703 LLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 762
Query: 301 YDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 347
Y G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 763 YVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 13/301 (4%)
Query: 60 ISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLP---GGHGLM 116
I F + ++ L +VLQ++L +E ++ +S +SWD E G H L+
Sbjct: 470 IYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLL 529
Query: 117 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 176
GY +I LA+GLDI+L V I V+VT G + A V+V VPL +L+
Sbjct: 530 TPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKG 589
Query: 177 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVV--SDTSYGC-S 229
I+F P L + K AI+ LG GI KI + F FW + +F G V S + G +
Sbjct: 590 AIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFA 649
Query: 230 YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVS 287
F ++ H VL+ + AG+ + + D+ L+++ + P +Y V+
Sbjct: 650 VFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVT 709
Query: 288 HWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMA 346
W TD +YS+ G S + Y+ + + +FFAGEAT+ +P +V GA+ +G+
Sbjct: 710 RWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVRE 769
Query: 347 A 347
A
Sbjct: 770 A 770
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 13/301 (4%)
Query: 60 ISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLP---GGHGLM 116
I F + ++ L +VLQ++L +E ++ +S +SWD E G H L+
Sbjct: 478 IYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLL 537
Query: 117 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 176
GY +I LA+GLDI+L V I V+VT G + A V+V VPL +L+
Sbjct: 538 TPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKG 597
Query: 177 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVV--SDTSYGC-S 229
I+F P L + K AI+ LG GI KI + F FW + +F G V S + G +
Sbjct: 598 AIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFA 657
Query: 230 YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVS 287
F ++ H VL+ + AG+ + + D+ L+++ + P +Y V+
Sbjct: 658 VFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVT 717
Query: 288 HWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMA 346
W TD +YS+ G S + Y+ + + +FFAGEAT+ +P +V GA+ +G+
Sbjct: 718 RWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVRE 777
Query: 347 A 347
A
Sbjct: 778 A 778
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 13/301 (4%)
Query: 60 ISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLP---GGHGLM 116
I F + ++ L +VLQ++L +E ++ +S +SWD E G H L+
Sbjct: 490 IYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLL 549
Query: 117 VRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR 176
GY +I LA+GLDI+L V I V+VT G + A V+V VPL +L+
Sbjct: 550 TPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKG 609
Query: 177 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVV--SDTSYGC-S 229
I+F P L + K AI+ LG GI KI + F FW + +F G V S + G +
Sbjct: 610 AIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFA 669
Query: 230 YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVS 287
F ++ H VL+ + AG+ + + D+ L+++ + P +Y V+
Sbjct: 670 VFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVT 729
Query: 288 HWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMA 346
W TD +YS+ G S + Y+ + + +FFAGEAT+ +P +V GA+ +G+
Sbjct: 730 RWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVRE 789
Query: 347 A 347
A
Sbjct: 790 A 790
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 15/252 (5%)
Query: 120 YLPVINTLAKGLDIRLGHRVTKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKA 175
YL + K +D RL ++ K+ R GV V E + AD V+V+ LGVL++
Sbjct: 216 YLKTDDKSGKIVDPRL--QLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQS 273
Query: 176 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYF 231
I+F+P+LP WK AI + + KI + F + FWP + FL S Y +
Sbjct: 274 DLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQ 333
Query: 232 LNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHW 289
+ VL+ + +R IE+ SDE L+K+ P D LV W
Sbjct: 334 EFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRW 393
Query: 290 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE- 348
+D G++S VG + Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE
Sbjct: 394 WSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 453
Query: 349 --DCRMRVLERY 358
+C + + +Y
Sbjct: 454 LINCAQKKMCKY 465
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 15/252 (5%)
Query: 120 YLPVINTLAKGLDIRLGHRVTKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKA 175
YL + K +D RL ++ K+ R GV V E + AD V+V+ LGVL++
Sbjct: 216 YLKTDDKSGKIVDPRL--QLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQS 273
Query: 176 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYF 231
I+F+P+LP WK AI + + I + F + FWP + FL S Y +
Sbjct: 274 DLIQFKPKLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQ 333
Query: 232 LNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHW 289
+ VL+ + +R IE+ SDE L+K+ P D LV W
Sbjct: 334 EFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRW 393
Query: 290 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE- 348
+D G++S VG + Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE
Sbjct: 394 WSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 453
Query: 349 --DCRMRVLERY 358
+C + + +Y
Sbjct: 454 LINCAQKKMCKY 465
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 128/344 (37%), Gaps = 90/344 (26%)
Query: 84 LCR-MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRV 139
LCR +E W D + +S K G Y V+ +A+ ++L V
Sbjct: 167 LCRYLELWHGLDWKLLSAKD---TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEV 223
Query: 140 TKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKE 189
ITR V V E G + AD V++ VP VL I+F+P L +
Sbjct: 224 KSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQ 283
Query: 190 AAIDDLGVGIENKIIMHFDKVFWPN------------VEFLGVVSD-------------- 223
A D + G K+I F++ W N EF+ +V +
Sbjct: 284 DAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERE 343
Query: 224 -----TSYGC----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LK 272
TS C +F+NL K+TG + + L IE + ++ F+F Q L
Sbjct: 344 DSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLN 403
Query: 273 KILP------------------DASSPI--QYLVSHWGTDANSLGSYSYD---------T 303
KI+ +A+ P+ +VS+W D S G+YS
Sbjct: 404 KIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMV 463
Query: 304 VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 347
V S+ R+R FAGE T M G +GA+ +G A
Sbjct: 464 VAMSNGQDSRIR-------FAGEHTIMDGAGCAYGAWESGRREA 500
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 128/344 (37%), Gaps = 90/344 (26%)
Query: 84 LCR-MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRV 139
LCR +E W D + +S K G Y V+ +A+ ++L V
Sbjct: 167 LCRYLELWHGLDWKLLSAKD---TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEV 223
Query: 140 TKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKE 189
ITR V V E G + AD V++ VP VL I+F+P L +
Sbjct: 224 KSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQ 283
Query: 190 AAIDDLGVGIENKIIMHFDKVFWPN------------VEFLGVVSD-------------- 223
A D + G K+I F++ W N EF+ +V +
Sbjct: 284 DAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERE 343
Query: 224 -----TSYGC----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LK 272
TS C +F+NL K+TG + + L IE + ++ F+F Q L
Sbjct: 344 DSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLN 403
Query: 273 KILP------------------DASSPI--QYLVSHWGTDANSLGSYSYD---------T 303
KI+ +A+ P+ +VS+W D S G+YS
Sbjct: 404 KIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMV 463
Query: 304 VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 347
V S+ R+R FAGE T M G +GA+ +G A
Sbjct: 464 VAMSNGQDSRIR-------FAGEHTIMDGAGCAYGAWESGRREA 500
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 128/344 (37%), Gaps = 90/344 (26%)
Query: 84 LCR-MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRV 139
LCR +E W D + +S K G Y V+ +A+ ++L V
Sbjct: 167 LCRYLELWHGLDWKLLSAKD---TYFGHQGRAAFALNYDSVVQRIAQSFPQNWLKLSCEV 223
Query: 140 TKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKE 189
ITR V V E G + AD V++ VP VL I+F+P L +
Sbjct: 224 KSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQ 283
Query: 190 AAIDDLGVGIENKIIMHFDKVFWPN------------VEFLGVVSD-------------- 223
A D + G K+I F++ W N EF+ +V +
Sbjct: 284 DAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERE 343
Query: 224 -----TSYGC----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LK 272
TS C +F+NL K+TG + + L IE + ++ F+F Q L
Sbjct: 344 DSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLN 403
Query: 273 KILP------------------DASSPI--QYLVSHWGTDANSLGSYSYD---------T 303
KI+ +A+ P+ +VS+W D S G+YS
Sbjct: 404 KIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMV 463
Query: 304 VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 347
V S+ R+R FAGE T M G +GA+ +G A
Sbjct: 464 VAMSNGQDSRIR-------FAGEHTIMDGAGCAYGAWESGRREA 500
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 128/344 (37%), Gaps = 90/344 (26%)
Query: 84 LCR-MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRV 139
LCR +E W D + +S K G Y V+ +A+ ++L V
Sbjct: 167 LCRYLELWHGLDWKLLSAKD---TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEV 223
Query: 140 TKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKE 189
ITR V V E G + AD V++ VP VL I+F+P L +
Sbjct: 224 KSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQ 283
Query: 190 AAIDDLGVGIENKIIMHFDKVFWPN------------VEFLGVVSD-------------- 223
A D + G K+I F++ W N EF+ +V +
Sbjct: 284 DAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERE 343
Query: 224 -----TSYGC----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LK 272
TS C +F+NL K+TG + + L IE + ++ F+F Q L
Sbjct: 344 DSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLN 403
Query: 273 KILP------------------DASSPI--QYLVSHWGTDANSLGSYSYD---------T 303
KI+ +A+ P+ +VS+W D S G+YS
Sbjct: 404 KIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMV 463
Query: 304 VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 347
V S+ R+R FAGE T M G +GA+ +G A
Sbjct: 464 VAMSNGQDSRIR-------FAGEHTIMDGAGCAYGAWESGRREA 500
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 126/344 (36%), Gaps = 90/344 (26%)
Query: 84 LCR-MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRV 139
LCR +E W D + +S K G Y V+ +A+ ++L V
Sbjct: 167 LCRYLELWHGLDWKLLSAKD---TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEV 223
Query: 140 TKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVLKART---------IKFEPRLPDWKE 189
ITR V V E G + AD V++ VP VL I+F+P L +
Sbjct: 224 KSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQ 283
Query: 190 AAIDDLGVGIENKIIMHFDKVFWPN------------VEFLGVVSD-------------- 223
A D + G K+I F++ W N EF+ +V +
Sbjct: 284 DAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSXLERE 343
Query: 224 -----TSYGC----SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LK 272
TS C +F+NL K+TG + L IE + ++ F+F Q L
Sbjct: 344 DSQKHTSVTCWSQPLFFVNLSKSTGVASFXXLXQAPLTNHIESIREDKERLFSFFQPVLN 403
Query: 273 KI------------------LPDASSPI--QYLVSHWGTDANSLGSYSY---------DT 303
KI + +A+ P+ +VS+W D S G+YS
Sbjct: 404 KIXKCLDSEDVIDGXRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDXV 463
Query: 304 VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 347
V S+ R+R FAGE T G +GA+ +G A
Sbjct: 464 VAXSNGQDSRIR-------FAGEHTIXDGAGCAYGAWESGRREA 500
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 19/275 (6%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G S+ + +E GG G + + ++ G ++L H VT
Sbjct: 196 WYVKQCGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTH 246
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIEN 201
+ + + + + + V+ A+P L A+ I F P LP + I L +G
Sbjct: 247 VDQSSDNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVI 304
Query: 202 KIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEK 257
K +M++ + FW ++ G ++ D S L+ K G ++ ++ A + R + K
Sbjct: 305 KCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAK 363
Query: 258 MSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 314
+ E K+L +A P+ Y +W + S G Y+ Y G +
Sbjct: 364 LHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVI 423
Query: 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
R PV +FFAG T+ + G + GA G AA +
Sbjct: 424 RQPVGRIFFAGTETATKWSGYMEGAVEAGERAARE 458
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 19/275 (6%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G S+ + +E GG G + + ++ G ++L H VT
Sbjct: 185 WYVKQCGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTH 235
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIEN 201
+ + + + + + V+ A+P L A+ I F P LP + I L +G
Sbjct: 236 VDQSSDNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVI 293
Query: 202 KIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEK 257
K +M++ + FW ++ G ++ D S L+ K G ++ ++ A + R + K
Sbjct: 294 KCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAK 352
Query: 258 MSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 314
+ E K+L +A P+ Y +W + S G Y+ Y G +
Sbjct: 353 LHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVI 412
Query: 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
R PV +FFAG T+ + G + GA G AA +
Sbjct: 413 RQPVGRIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 19/275 (6%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G S+ + +E GG G + + ++ G ++L H VT
Sbjct: 185 WYVKQCGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTH 235
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIEN 201
+ + + + + + V+ A+P L A+ I F P LP + I L +G
Sbjct: 236 VDQSSDNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVI 293
Query: 202 KIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEK 257
K +M++ + FW ++ G ++ D S L+ K G ++ ++ A + R + K
Sbjct: 294 KCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAK 352
Query: 258 MSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 314
+ E K+L +A P+ Y +W + S G Y+ Y G +
Sbjct: 353 LHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVI 412
Query: 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
R PV +FFAG T+ + G + GA G AA +
Sbjct: 413 RQPVGRIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 14/228 (6%)
Query: 133 IRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWK 188
++ RV KI ++ V VT + + + AD V+V AR I+FEP LP K
Sbjct: 255 VKFNARVIKIQQNANQVTVTYQTPEKDTSSNTADYVIVCTT--SRAARRIQFEPPLPPKK 312
Query: 189 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 246
+ A+ + KI + FW + G S T Y+ N + +TG V++
Sbjct: 313 QHALRSVHYRSGTKIFLTCSSKFWEDDGIHGGKSTTDLPSRFIYYPNHNFSTGVGVIIAY 372
Query: 247 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 301
G A + + + A+ F L I IQ ++ W D ++G+ +
Sbjct: 373 GIGDDANFFQALKFKDCADIVFNDLSLIHQLPKEEIQSFCYPSMIQKWSLDKYAMGAITT 432
Query: 302 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
T + E L P +FFAGE T+ ++ G + +GL AA D
Sbjct: 433 FTPYQFQRFSEALTAPQGRIFFAGEYTAEAH-GWIDSTIKSGLTAARD 479
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 199
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 200 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 256
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 257 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 313
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGHMEGAVEAGERAARE 449
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 199
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 200 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 256
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 257 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 313
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 186 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 236
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 199
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 237 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 292
Query: 200 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 256
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 293 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 352
Query: 257 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 313
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 353 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 412
Query: 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 413 LRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 448
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 199
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 200 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 256
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 257 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 313
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGLMEGAVEAGERAARE 449
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 199
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 200 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 256
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 257 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 313
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGFMEGAVEAGERAARE 449
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 199
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 200 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 256
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 257 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 313
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGWMEGAVEAGERAARE 449
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 12/228 (5%)
Query: 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 187
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 188 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 244
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 245 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 301
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 302 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
G LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 12/228 (5%)
Query: 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 187
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 226 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 281
Query: 188 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 244
+ I + +G K I+++ + FW ++ G ++ +Y L+ K G + ++
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIM 341
Query: 245 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 301
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 342 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 401
Query: 302 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
G LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 402 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 87/223 (39%), Gaps = 13/223 (5%)
Query: 121 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKAR 176
LP A + L RV KI + V VT + + + AD V+V AR
Sbjct: 256 LPTSMYQAIQEKVHLNARVIKIQQDVKEVTVTYQTSEKETLSVTADYVIVCTT--SRAAR 313
Query: 177 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNL 234
IKFEP LP K A+ + KI + K FW + G S T Y+ N
Sbjct: 314 RIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDDGIHGGKSTTDLPSRFIYYPNH 373
Query: 235 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQ-----YLVSHW 289
+ G V++ G A E + E + L I IQ ++ W
Sbjct: 374 NFPNGVGVIIAYGIGDDANYFEALDFEDCGDIVINDLSLIHQLPKEEIQAICRPSMIQRW 433
Query: 290 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSY 332
D ++G + T + E L PVD ++FAGE T+ ++
Sbjct: 434 SLDKYAMGGITTFTPYQFQHFSEALTAPVDRIYFAGEYTAQAH 476
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 19/275 (6%)
Query: 82 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 141
WY+ + G A S+ + +E GG G + + ++ G ++L VT
Sbjct: 204 WYVRQCGG----TARIFSVTNGGQERKFVGGSGQVSEQIMGLL-----GDKVKLSSPVTY 254
Query: 142 ITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIEN 201
I + + V + + V+ A+P +L A+ I F+P LP + I L +G
Sbjct: 255 IDQTDDNIIVETLNHEHYECKYVISAIP-PILTAK-IHFKPELPPERNQLIQRLPMGAVI 312
Query: 202 KIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEK 257
K ++++ + FW ++ G ++ D + L+ K G ++ ++ A + R + K
Sbjct: 313 KCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADR-LAK 371
Query: 258 MSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 314
+ + K+L +A P+ Y +W + S G Y+ Y G +
Sbjct: 372 LHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVI 431
Query: 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
R PV ++FAG T+ + G + GA G AA +
Sbjct: 432 RQPVGRIYFAGTETATQWSGYMEGAVEAGERAARE 466
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 12/228 (5%)
Query: 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDW 187
G ++L V I + V V + + A V+ A+P LG+ I F P LP
Sbjct: 225 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMM 280
Query: 188 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLV 244
+ I + +G K I+++ + FW ++ G ++ + L+ K G + ++
Sbjct: 281 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAATLDDTKPEGNYAAIM 340
Query: 245 YMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-Y 301
AR + +++ E K+L +A P+ Y +W + S G Y+ Y
Sbjct: 341 GFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 400
Query: 302 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
G LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 401 FPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 448
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 14/228 (6%)
Query: 133 IRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWK 188
+ L +V KI ++ V V + + AD V+V R IKFEP LP K
Sbjct: 255 VHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRA--TRRIKFEPPLPPKK 312
Query: 189 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 246
A+ + KI + K FW + G S T Y+ N + +G V++
Sbjct: 313 AHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSRFIYYPNHNFTSGVGVIIAY 372
Query: 247 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 301
G A + + + A+ L I IQ ++ W D ++G +
Sbjct: 373 GIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPSMIQKWSLDKYAMGGITT 432
Query: 302 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 349
T + E L VD ++FAGE T+ ++ G + +GL AA D
Sbjct: 433 FTPYQFQHFSESLTASVDRIYFAGEHTAEAH-GWIDSTIKSGLRAARD 479
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 93/234 (39%), Gaps = 15/234 (6%)
Query: 128 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 187
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 188 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 242
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 299
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYTA 397
Query: 300 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353
S+D +G H R PV + F+ + G V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYGHVDGAVRMGQRTAADIIAR 450
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 17/212 (8%)
Query: 132 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 191
+IRL VT I + V VTV+ G F A +V+VA P+ R I F P LP+ + +
Sbjct: 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSV 276
Query: 192 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 251
I++ G KI++H + +E +G D + Y + ++ + +G
Sbjct: 277 IEEGHGGQGLKILIHV-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSF 332
Query: 252 -ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL 310
DI + D A + +++ + D W D G + VG+ +
Sbjct: 333 DPTDIGAVKD--AVLYYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRV 382
Query: 311 YERLRIPVDNLFFAGEATSMSYPGSVHGAFST 342
++ L P + F G S+ +PG + GA T
Sbjct: 383 HKELGEPAGRIHFVGSDVSLEFPGYIEGALET 414
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 17/212 (8%)
Query: 132 DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 191
+IRL VT I + V VTV+ G F A +V+VA P+ R I F P LP+ + +
Sbjct: 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSV 276
Query: 192 IDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 251
I++ G KI++H + +E +G D + Y + ++ + +G
Sbjct: 277 IEEGHGGQGLKILIHV-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSF 332
Query: 252 -ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL 310
DI + D A + +++ + D W D G + VG+ +
Sbjct: 333 DPTDIGAVKD--AVLYYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRV 382
Query: 311 YERLRIPVDNLFFAGEATSMSYPGSVHGAFST 342
++ L P + F G S+ +PG + GA T
Sbjct: 383 HKELGEPAGRIHFVGSDVSLEFPGYIEGALET 414
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 15/234 (6%)
Query: 128 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 187
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 188 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 242
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 299
LV + + A + ++S E L + L P A P+ Y S WG++ + G+Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGAYAA 397
Query: 300 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 15/234 (6%)
Query: 128 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 187
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 188 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 242
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 299
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAA 397
Query: 300 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 15/234 (6%)
Query: 128 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 187
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 188 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 242
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 243 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 299
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAA 397
Query: 300 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 14/231 (6%)
Query: 133 IRLGHRVTKITRHYIGVKVTVEG----GKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 188
+ +V KI ++ V V E + AD V+V + R IKF P L K
Sbjct: 255 VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV--RLIKFNPPLLPKK 312
Query: 189 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 246
A+ + KI + FW + G S T Y+ N + G V++
Sbjct: 313 AHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAY 372
Query: 247 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 301
G A + + + A+ F L I IQ ++ W D ++G +
Sbjct: 373 GIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITT 432
Query: 302 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352
T + + L ++FAGE T+ ++ G + +GL AA D +
Sbjct: 433 FTPYQFQHFSDPLTASQGRIYFAGEYTAQAH-GWIDSTIKSGLRAARDVNL 482
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 29/223 (13%)
Query: 135 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 194
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 195 LGVG--------IENKIIMHFDKVFWPNVEFLGVVSD--TSYGCSYFLNLHKATGHCVLV 244
V ++NK + + + +P + + D T G ++ + + H
Sbjct: 333 GHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHI--- 389
Query: 245 YMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 304
P + ++ + A F +L + +W D + G++ +
Sbjct: 390 -QPDEDVRETLKAVGQLAPGTFGVKRL-------------VFHNWVKDEFAKGAWFFSRP 435
Query: 305 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 347
G + + LR + FA ++ + + GA G AA
Sbjct: 436 GMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 11/214 (5%)
Query: 135 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 194
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 195 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 254
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 255 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 313
I+ D A QL + ++ LV H W D + G++ + G + +
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 347
LR + FA ++ + + GA G AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 9/213 (4%)
Query: 135 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 194
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 195 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 254
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 255 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL 314
I+ D A QL P + + +W D + G++ + G + + L
Sbjct: 389 IQPDEDVRETLKAVGQLA---PGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGL 445
Query: 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 347
R + FA ++ + + GA G AA
Sbjct: 446 REKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 90 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGV 149
W AE I L+ D+ +LP + R V +GL IR G RVT + G
Sbjct: 186 WHRLGAEVIVLEYMDR--ILPTMDLEVSRAAERVFKK--QGLTIRTGVRVTAVVPEAKGA 241
Query: 150 KVTVEGGKTFVADAVVVAV 168
+V +EGG+ AD V+VAV
Sbjct: 242 RVELEGGEVLEADRVLVAV 260
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 7/180 (3%)
Query: 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 189
G D+ L V I GV V E T A V++AVP + + F+P LP +
Sbjct: 228 GDDVVLNSPVRTIKWDENGVSVVSERA-TVNARFVIMAVPPNLYS--RVSFDPPLPRRQH 284
Query: 190 AAIDDLGVGIENKIIMHFDKVFWPNVEFLGV-VSDTSYGCSYFLNLHKATGHCVLVYMPA 248
+G+ K+ +D FW G S + + N + LV +
Sbjct: 285 QMHQHQSLGLVIKVHAVYDTPFWREEGLSGTGFSAGALVQEVYDNTNHGDSRGTLVGFVS 344
Query: 249 GQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSY--SYDTVG 305
+ A + ++S E + L D A +P Y S WG++ + G+Y SYD G
Sbjct: 345 DEKADAVFELSAEDRKKAILESIAGFLGDKALTPEVYYESDWGSEEWTRGAYASSYDLGG 404
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 129 KGLDIRLGHRVTKITRHYIGVKVT---VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 185
+G+D +LG +VT + G KVT V+GG+ DA VV + G R P
Sbjct: 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATG-----------RKP 300
Query: 186 DWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVY 245
+ GV ++++ + D+ F ++ + + D G HKA V V
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPXL---AHKAEDEGVAVA 357
Query: 246 -MPAGQ 250
+ AGQ
Sbjct: 358 EIIAGQ 363
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 125 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAV-PLGVLKART 177
N + +G DIRL RV +I G VK G ADAVV+A R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV 323
Query: 178 IKFEPRLPDWK 188
K++P+L +K
Sbjct: 324 SKYDPKLKGFK 334
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 125 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAV-PLGVLKART 177
N + +G DIRL RV +I G VK G ADAVV+A R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV 323
Query: 178 IKFEPRLPDWK 188
K++P+L +K
Sbjct: 324 SKYDPKLKGFK 334
>pdb|4FAI|A Chain A, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
pdb|4FAI|B Chain B, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
Length = 330
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 206 HFDKVFWPNVEFLGVVSDTSYGCSYFLNL 234
H+D + P VEFLG +D++ C+ LNL
Sbjct: 113 HYDSKYMPGVEFLG-ATDSAVPCAMLLNL 140
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 257 KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI 316
K+ A+ N + AS+ Q L+S WG +S SY D+ + L+
Sbjct: 89 KLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYP--------DVLKCLKA 140
Query: 317 PVDNLFFAGEATSMSYPGSV-HGAFSTGLMAAEDCR 351
P+ + + +YPG + F GL + C+
Sbjct: 141 PI----LSDSSCKSAYPGQITSNMFCAGLEGGDSCQ 172
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 24 VPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRP 68
+ LV EA I K T K H+ D+S +RA++ +FD P
Sbjct: 34 IADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHP 78
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 90 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVT--KITRHYI 147
W AE L++ DK LP + + L V+ +GL+IRLG RVT ++ + +
Sbjct: 199 WARLGAEVTVLEALDK--FLPAADEQIAKEALKVLTK--QGLNIRLGARVTASEVKKKQV 254
Query: 148 GVKVTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII 204
V T G +TF D ++VAV R P + D GV ++ +
Sbjct: 255 TVTFTDANGEQKETF--DKLIVAV-------------GRRPVTTDLLAADSGVTLDERGF 299
Query: 205 MHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLV 244
++ D +V + + D G + HKA+ V+V
Sbjct: 300 IYVDDHCKTSVPGVFAIGDVVRGA---MLAHKASEEGVMV 336
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 246 MPAGQLAR-DIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 304
MPA ++R D + D + F K+LP AS S WG A+ G+ D
Sbjct: 337 MPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASDTKLSRFSSWGLTAD--GNIKPDIA 394
Query: 305 GKSHDLYERLRIPVDNLFFAGEATSMSYP 333
D+ L +N + TSMS P
Sbjct: 395 APGQDI---LSSVANNKYAKLSGTSMSAP 420
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 122 PVI----NTLAKGLDIRLGHRVTKITRHYIGVKVTVEG 155
PVI N L KG+D+ GHRVT + Y+ V G
Sbjct: 5 PVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGG 42
>pdb|1QHZ|A Chain A, Native Tetragonal Structure Of The Endoglucanase Cel5a
From Bacillus Agaradhaerens
pdb|1QI0|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With Cellobiose
pdb|1QI2|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
2',4'-Dinitrophenyl 2-Deoxy-2-Fluoro-B- D-Cellotrioside
pdb|1E5J|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
Methyl-4ii-S-Alpha-Cellobiosyl-4ii-Thio
Beta-Cellobioside
pdb|2V38|A Chain A, Family 5 Endoglucanase Cel5a From Bacillus Agaradhaerens
In Complex With Cellobio-Derived Noeuromycin
Length = 305
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 42 ETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWY 83
+ D V EEH + +SI +V +R +++L+G++ LQWY
Sbjct: 1 DNDSVVEEHGQ-LSISNG-ELVNERGEQVQLKGMSSHGLQWY 40
>pdb|4A3H|A Chain A, 2',4' Dinitrophenyl-2-Deoxy-2-Fluro-B-D-Cellobioside
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhaerens At 1.6 A Resolution
pdb|5A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellobiosylENZYME INTERMEDIATE
COMPLEX Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.8 Angstroms Resolution
pdb|6A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
COMPLEX OF THE Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.6 Angstrom Resolution
pdb|7A3H|A Chain A, Native Endoglucanase Cel5a Catalytic Core Domain At 0.95
Angstroms Resolution
pdb|8A3H|A Chain A, Cellobiose-derived Imidazole Complex Of The
Endoglucanase Cel5a From Bacillus Agaradhaerens At 0.97
A Resolution
pdb|1HF6|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Orthorhombic Crystal Form In Complex With Cellotriose
pdb|1H11|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution
pdb|1H2J|A Chain A, Endoglucanase Cel5a In Complex With Unhydrolysed And
Covalently Linked 2,4-Dinitrophenyl-2-Deoxy-2-
Fluoro-Cellobioside At 1.15 A Resolution
pdb|1OCQ|A Chain A, Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution With
Cellobio-Derived Isofagomine
pdb|1W3K|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In
Complex With Cellobio Derived-tetrahydrooxazine
pdb|1W3L|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In
Complex With Cellotri Derived-Tetrahydrooxazine
Length = 303
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 42 ETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWY 83
+ D V EEH + +SI +V +R +++L+G++ LQWY
Sbjct: 1 DNDSVVEEHGQ-LSISNG-ELVNERGEQVQLKGMSSHGLQWY 40
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 135 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTI 178
LG R + R KVT G + A AV++A +G + R I
Sbjct: 84 LGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRI 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,616,820
Number of Sequences: 62578
Number of extensions: 490929
Number of successful extensions: 1341
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 71
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)