Query 016772
Match_columns 383
No_of_seqs 290 out of 2182
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02268 probable polyamine ox 100.0 2.3E-48 5E-53 377.3 39.2 342 13-354 93-434 (435)
2 PLN02976 amine oxidase 100.0 4.7E-46 1E-50 380.3 38.0 353 3-355 774-1187(1713)
3 PLN03000 amine oxidase 100.0 3.9E-46 8.4E-51 372.6 35.6 353 2-357 259-626 (881)
4 PLN02529 lysine-specific histo 100.0 1.3E-44 2.8E-49 361.0 37.2 351 2-355 235-599 (738)
5 PLN02328 lysine-specific histo 100.0 4.7E-44 1E-48 358.2 35.5 352 3-357 314-682 (808)
6 PLN02676 polyamine oxidase 100.0 1.1E-41 2.4E-46 331.7 36.8 345 2-355 101-474 (487)
7 PLN02568 polyamine oxidase 100.0 2.1E-41 4.6E-46 331.9 36.4 341 12-354 98-535 (539)
8 KOG0685 Flavin-containing amin 100.0 2E-40 4.2E-45 304.3 25.8 340 14-356 109-493 (498)
9 KOG0029 Amine oxidase [Seconda 100.0 8.2E-37 1.8E-41 294.4 28.5 282 75-356 171-461 (501)
10 COG1231 Monoamine oxidase [Ami 100.0 1.3E-33 2.7E-38 259.9 19.3 239 114-354 202-447 (450)
11 PF01593 Amino_oxidase: Flavin 100.0 2.9E-29 6.4E-34 243.1 21.9 235 115-351 206-450 (450)
12 TIGR00562 proto_IX_ox protopor 100.0 2.7E-28 5.9E-33 238.8 26.0 279 51-354 134-460 (462)
13 PRK12416 protoporphyrinogen ox 100.0 5.1E-28 1.1E-32 236.7 26.0 277 52-354 144-461 (463)
14 TIGR03467 HpnE squalene-associ 100.0 1.5E-27 3.2E-32 230.7 25.0 274 51-351 128-418 (419)
15 PLN02576 protoporphyrinogen ox 100.0 6.1E-27 1.3E-31 231.1 23.7 280 51-355 143-488 (496)
16 PRK11883 protoporphyrinogen ox 99.9 1.5E-25 3.2E-30 218.9 26.3 275 51-352 138-450 (451)
17 COG1232 HemY Protoporphyrinoge 99.9 4.4E-26 9.6E-31 215.2 20.9 314 12-351 85-443 (444)
18 TIGR02731 phytoene_desat phyto 99.9 1.3E-24 2.8E-29 212.1 22.6 279 52-351 146-453 (453)
19 PLN02612 phytoene desaturase 99.9 2.7E-24 5.8E-29 213.7 22.0 284 52-354 241-548 (567)
20 PRK07233 hypothetical protein; 99.9 3.3E-24 7.1E-29 208.3 19.4 278 52-355 130-432 (434)
21 PRK07208 hypothetical protein; 99.9 4.3E-21 9.4E-26 188.7 24.9 280 51-353 130-460 (479)
22 PLN02487 zeta-carotene desatur 99.9 8.4E-21 1.8E-25 186.8 22.4 282 51-355 227-554 (569)
23 TIGR02732 zeta_caro_desat caro 99.9 1.9E-20 4.1E-25 182.8 20.3 277 52-351 152-474 (474)
24 KOG1276 Protoporphyrinogen oxi 99.8 1.4E-18 3E-23 158.2 19.8 322 6-351 99-490 (491)
25 TIGR02733 desat_CrtD C-3',4' d 99.8 4.4E-18 9.6E-23 167.8 22.3 257 91-352 199-490 (492)
26 COG3380 Predicted NAD/FAD-depe 99.8 4.1E-19 8.9E-24 152.5 10.4 223 114-353 101-330 (331)
27 TIGR02734 crtI_fam phytoene de 99.7 1.3E-16 2.9E-21 157.7 17.3 260 88-353 185-491 (502)
28 TIGR02730 carot_isom carotene 99.7 1.5E-15 3.2E-20 149.7 22.1 240 110-353 218-491 (493)
29 COG2907 Predicted NAD/FAD-bind 99.4 3.4E-11 7.3E-16 107.6 16.2 147 50-211 147-307 (447)
30 KOG4254 Phytoene desaturase [C 99.2 4.1E-10 8.9E-15 104.0 16.2 236 110-353 253-545 (561)
31 COG1233 Phytoene dehydrogenase 99.1 3.8E-10 8.1E-15 110.9 12.0 80 93-172 195-281 (487)
32 COG3349 Uncharacterized conser 98.6 1.5E-07 3.4E-12 89.6 10.1 271 91-375 177-484 (485)
33 PF07156 Prenylcys_lyase: Pren 98.3 2.4E-05 5.2E-10 73.6 14.3 97 74-172 80-187 (368)
34 TIGR00031 UDP-GALP_mutase UDP- 98.1 0.00012 2.5E-09 69.3 15.9 98 73-174 140-249 (377)
35 PTZ00363 rab-GDP dissociation 98.0 6.9E-05 1.5E-09 72.5 12.4 58 112-169 223-287 (443)
36 TIGR01984 UbiH 2-polyprenyl-6- 97.5 0.0097 2.1E-07 56.8 17.9 42 130-171 120-161 (382)
37 TIGR01988 Ubi-OHases Ubiquinon 97.3 0.023 5E-07 54.2 18.3 40 131-170 122-161 (385)
38 PRK05732 2-octaprenyl-6-methox 97.0 0.059 1.3E-06 51.6 18.0 50 122-171 117-168 (395)
39 PRK07494 2-octaprenyl-6-methox 97.0 0.057 1.2E-06 51.6 17.5 185 133-352 128-316 (388)
40 PRK07333 2-octaprenyl-6-methox 97.0 0.084 1.8E-06 50.7 18.8 41 130-170 125-165 (403)
41 PRK09126 hypothetical protein; 97.0 0.078 1.7E-06 50.7 18.2 49 123-171 116-166 (392)
42 PRK08773 2-octaprenyl-3-methyl 96.9 0.12 2.5E-06 49.7 19.1 42 130-171 127-168 (392)
43 PRK05714 2-octaprenyl-3-methyl 96.9 0.16 3.5E-06 48.9 19.8 42 130-171 126-167 (405)
44 PRK08020 ubiF 2-octaprenyl-3-m 96.9 0.14 3E-06 49.1 19.1 50 122-171 117-168 (391)
45 COG0654 UbiH 2-polyprenyl-6-me 96.8 0.15 3.3E-06 48.8 18.4 193 131-354 120-316 (387)
46 PRK08850 2-octaprenyl-6-methox 96.7 0.21 4.5E-06 48.2 19.0 50 122-171 116-167 (405)
47 PRK07364 2-octaprenyl-6-methox 96.6 0.25 5.5E-06 47.6 18.4 41 130-170 136-179 (415)
48 TIGR02032 GG-red-SF geranylger 96.5 0.22 4.7E-06 45.3 16.8 42 130-171 105-147 (295)
49 PRK08849 2-octaprenyl-3-methyl 96.5 0.29 6.4E-06 46.7 18.2 42 130-171 125-166 (384)
50 PRK08013 oxidoreductase; Provi 96.4 0.68 1.5E-05 44.5 19.9 49 123-171 117-167 (400)
51 COG2081 Predicted flavoprotein 96.3 0.01 2.2E-07 55.4 6.7 56 114-169 103-164 (408)
52 PRK10015 oxidoreductase; Provi 96.3 0.21 4.6E-06 48.5 16.1 42 130-171 122-163 (429)
53 PF13738 Pyr_redox_3: Pyridine 96.3 0.0075 1.6E-07 51.9 5.5 47 124-170 88-136 (203)
54 TIGR02352 thiamin_ThiO glycine 96.2 0.33 7.2E-06 45.2 16.3 51 121-172 137-193 (337)
55 PRK07608 ubiquinone biosynthes 96.2 0.66 1.4E-05 44.2 18.6 40 131-171 127-166 (388)
56 PRK11259 solA N-methyltryptoph 95.9 0.88 1.9E-05 43.1 18.0 42 130-172 163-204 (376)
57 PRK10157 putative oxidoreducta 95.8 0.19 4.1E-06 48.8 13.1 42 130-171 122-163 (428)
58 PRK06996 hypothetical protein; 95.7 1.1 2.4E-05 43.1 17.8 40 130-169 129-171 (398)
59 PF01266 DAO: FAD dependent ox 95.6 0.02 4.4E-07 53.6 5.3 58 114-172 137-203 (358)
60 TIGR01377 soxA_mon sarcosine o 95.5 1.3 2.9E-05 42.0 17.7 41 130-171 159-199 (380)
61 PRK06184 hypothetical protein; 95.5 0.73 1.6E-05 45.8 16.3 50 123-172 115-168 (502)
62 PF05834 Lycopene_cycl: Lycope 95.4 2.6 5.6E-05 40.2 19.2 50 122-171 92-141 (374)
63 PF13454 NAD_binding_9: FAD-NA 95.4 0.042 9.1E-07 45.3 5.9 50 120-169 104-154 (156)
64 PRK06617 2-octaprenyl-6-methox 95.2 2.6 5.7E-05 40.1 18.4 40 131-171 120-159 (374)
65 TIGR03197 MnmC_Cterm tRNA U-34 95.1 0.041 8.8E-07 52.6 5.6 52 121-172 135-190 (381)
66 PRK06126 hypothetical protein; 95.0 1.6 3.5E-05 43.9 17.2 43 130-172 141-188 (545)
67 PRK06185 hypothetical protein; 94.9 2.2 4.9E-05 40.9 17.5 42 130-171 123-168 (407)
68 PRK07045 putative monooxygenas 94.8 2 4.3E-05 41.0 16.6 43 130-172 121-165 (388)
69 COG0644 FixC Dehydrogenases (f 94.8 1.3 2.9E-05 42.5 15.3 42 129-170 108-150 (396)
70 TIGR01989 COQ6 Ubiquinone bios 94.7 3.2 6.9E-05 40.5 17.8 50 122-171 122-182 (437)
71 PRK11445 putative oxidoreducta 94.6 3.7 8.1E-05 38.6 17.7 44 128-171 110-156 (351)
72 PF03486 HI0933_like: HI0933-l 94.5 0.081 1.8E-06 50.9 6.0 51 119-169 107-163 (409)
73 PF00996 GDI: GDP dissociation 94.3 0.58 1.3E-05 45.3 11.3 56 111-167 222-284 (438)
74 COG0579 Predicted dehydrogenas 93.8 0.16 3.4E-06 48.9 6.5 54 120-173 152-212 (429)
75 PRK07588 hypothetical protein; 93.3 0.17 3.6E-06 48.5 5.9 47 125-171 111-157 (391)
76 PRK08132 FAD-dependent oxidore 93.2 7.8 0.00017 39.0 17.9 49 123-171 131-184 (547)
77 TIGR01373 soxB sarcosine oxida 93.2 8.2 0.00018 37.1 18.2 42 130-172 197-240 (407)
78 COG2509 Uncharacterized FAD-de 93.2 0.19 4.1E-06 47.9 5.8 41 130-170 187-228 (486)
79 TIGR03219 salicylate_mono sali 92.7 0.26 5.6E-06 47.6 6.3 52 121-172 105-159 (414)
80 PRK07236 hypothetical protein; 92.7 0.28 6E-06 46.9 6.5 51 119-169 98-151 (386)
81 PTZ00383 malate:quinone oxidor 92.3 0.36 7.7E-06 47.8 6.7 42 131-173 232-274 (497)
82 TIGR01790 carotene-cycl lycope 92.2 10 0.00023 36.0 16.6 41 131-172 100-141 (388)
83 PRK11728 hydroxyglutarate oxid 91.9 0.41 8.8E-06 45.9 6.5 51 121-172 149-204 (393)
84 TIGR03862 flavo_PP4765 unchara 91.7 0.39 8.4E-06 45.6 5.9 52 117-170 82-139 (376)
85 PRK05868 hypothetical protein; 91.7 0.36 7.8E-06 46.0 5.7 43 129-171 117-159 (372)
86 PRK06847 hypothetical protein; 91.5 0.48 1E-05 45.0 6.5 42 130-171 121-162 (375)
87 PRK06753 hypothetical protein; 91.5 0.47 1E-05 45.0 6.4 51 121-171 98-151 (373)
88 COG0665 DadA Glycine/D-amino a 91.2 4.8 0.0001 38.2 13.1 51 121-172 156-212 (387)
89 TIGR00275 flavoprotein, HI0933 90.6 1 2.2E-05 43.4 7.8 51 119-170 103-158 (400)
90 PRK01747 mnmC bifunctional tRN 90.6 0.48 1E-05 48.8 5.9 52 121-172 408-463 (662)
91 PRK06834 hypothetical protein; 90.5 0.67 1.5E-05 45.9 6.6 41 130-170 114-154 (488)
92 PRK08294 phenol 2-monooxygenas 90.4 22 0.00047 36.6 17.5 41 131-171 158-209 (634)
93 PRK09897 hypothetical protein; 90.3 0.62 1.4E-05 46.5 6.1 40 131-170 124-164 (534)
94 PRK06116 glutathione reductase 90.1 0.72 1.6E-05 45.1 6.4 41 130-170 222-263 (450)
95 PLN02172 flavin-containing mon 90.1 0.75 1.6E-05 45.2 6.4 50 121-170 111-171 (461)
96 TIGR03329 Phn_aa_oxid putative 90.0 0.69 1.5E-05 45.4 6.2 40 130-171 197-236 (460)
97 PRK07846 mycothione reductase; 89.9 0.75 1.6E-05 45.1 6.3 42 129-170 219-260 (451)
98 PRK00711 D-amino acid dehydrog 89.8 0.78 1.7E-05 44.2 6.3 42 130-172 215-257 (416)
99 TIGR03452 mycothione_red mycot 89.4 0.99 2.1E-05 44.2 6.7 42 129-170 222-263 (452)
100 PRK07190 hypothetical protein; 89.3 0.88 1.9E-05 45.0 6.4 43 130-172 123-165 (487)
101 PRK08163 salicylate hydroxylas 89.3 0.83 1.8E-05 43.7 6.0 50 122-171 114-165 (396)
102 PRK13339 malate:quinone oxidor 89.2 0.91 2E-05 44.9 6.2 53 120-172 187-247 (497)
103 PRK12409 D-amino acid dehydrog 89.0 0.95 2.1E-05 43.6 6.2 43 130-172 211-258 (410)
104 PRK04965 NADH:flavorubredoxin 89.0 1 2.2E-05 43.0 6.3 41 130-170 197-237 (377)
105 PRK08243 4-hydroxybenzoate 3-m 88.6 23 0.0005 33.8 16.6 42 130-171 117-162 (392)
106 PRK13977 myosin-cross-reactive 88.6 1.5 3.3E-05 43.8 7.3 34 319-352 487-522 (576)
107 PLN02507 glutathione reductase 88.5 1.2 2.6E-05 44.3 6.6 41 130-170 258-298 (499)
108 PRK05249 soluble pyridine nucl 88.4 1.2 2.5E-05 43.8 6.4 41 130-170 230-270 (461)
109 TIGR03378 glycerol3P_GlpB glyc 88.0 1.3 2.9E-05 42.6 6.3 49 123-171 269-321 (419)
110 PLN02927 antheraxanthin epoxid 87.9 1.4 3E-05 45.1 6.7 52 121-172 194-248 (668)
111 PF00070 Pyr_redox: Pyridine n 87.9 0.69 1.5E-05 33.1 3.4 34 123-156 46-80 (80)
112 PRK06416 dihydrolipoamide dehy 87.4 1.3 2.7E-05 43.6 6.0 41 130-170 227-270 (462)
113 PRK07845 flavoprotein disulfid 87.4 1.5 3.2E-05 43.2 6.5 41 130-170 232-272 (466)
114 TIGR01292 TRX_reduct thioredox 87.3 1.6 3.4E-05 39.8 6.3 40 130-170 71-110 (300)
115 TIGR01350 lipoamide_DH dihydro 87.2 1.5 3.2E-05 43.1 6.4 42 130-171 225-268 (461)
116 PRK05257 malate:quinone oxidor 87.0 1.3 2.9E-05 43.8 5.9 51 122-172 188-246 (494)
117 TIGR01424 gluta_reduc_2 glutat 87.0 1.6 3.5E-05 42.7 6.5 41 130-170 221-261 (446)
118 PRK09754 phenylpropionate diox 86.7 1.6 3.5E-05 41.9 6.3 40 130-170 200-239 (396)
119 TIGR02485 CobZ_N-term precorri 85.9 2.2 4.7E-05 41.5 6.7 54 116-169 118-180 (432)
120 COG1249 Lpd Pyruvate/2-oxoglut 84.6 2.1 4.6E-05 41.8 5.9 39 131-169 229-269 (454)
121 TIGR03140 AhpF alkyl hydropero 84.4 2.7 5.7E-05 42.0 6.7 42 130-171 281-322 (515)
122 TIGR01320 mal_quin_oxido malat 84.1 2.3 5E-05 42.0 6.1 52 121-172 178-240 (483)
123 PLN02463 lycopene beta cyclase 84.1 2.5 5.4E-05 41.3 6.1 41 130-171 128-168 (447)
124 PRK05329 anaerobic glycerol-3- 83.9 3 6.5E-05 40.4 6.6 41 130-170 273-316 (422)
125 PF06039 Mqo: Malate:quinone o 83.8 2.9 6.4E-05 40.4 6.3 54 120-173 180-245 (488)
126 PRK15317 alkyl hydroperoxide r 83.7 2.9 6.2E-05 41.8 6.6 42 130-171 280-321 (517)
127 KOG2820 FAD-dependent oxidored 83.3 2.7 5.8E-05 38.8 5.5 45 130-174 167-214 (399)
128 PRK08010 pyridine nucleotide-d 83.1 3 6.5E-05 40.7 6.4 40 130-170 213-252 (441)
129 TIGR03364 HpnW_proposed FAD de 83.1 2.2 4.9E-05 40.2 5.4 47 121-172 149-197 (365)
130 COG0562 Glf UDP-galactopyranos 83.1 1.4 3E-05 40.3 3.6 91 74-174 141-243 (374)
131 PF00743 FMO-like: Flavin-bind 83.0 3.1 6.7E-05 41.6 6.4 40 132-171 102-149 (531)
132 PRK06183 mhpA 3-(3-hydroxyphen 82.7 2.6 5.6E-05 42.3 5.9 43 130-172 128-174 (538)
133 PF01134 GIDA: Glucose inhibit 82.4 3.7 7.9E-05 39.2 6.3 51 119-170 96-150 (392)
134 PRK14727 putative mercuric red 82.0 3.7 8E-05 40.6 6.6 41 130-171 242-282 (479)
135 TIGR01421 gluta_reduc_1 glutat 81.8 3.7 8E-05 40.2 6.4 41 130-170 221-263 (450)
136 PRK07818 dihydrolipoamide dehy 81.5 3.5 7.5E-05 40.6 6.2 41 130-170 227-271 (466)
137 PRK06475 salicylate hydroxylas 81.3 3.6 7.8E-05 39.5 6.1 43 130-172 122-167 (400)
138 PTZ00052 thioredoxin reductase 81.3 4 8.6E-05 40.6 6.5 41 130-170 236-276 (499)
139 PRK06327 dihydrolipoamide dehy 81.3 3.4 7.4E-05 40.8 6.0 41 130-170 238-282 (475)
140 TIGR01423 trypano_reduc trypan 81.3 4 8.6E-05 40.4 6.5 41 130-170 245-286 (486)
141 PRK07251 pyridine nucleotide-d 80.4 4.4 9.5E-05 39.5 6.4 40 130-170 212-251 (438)
142 PF03275 GLF: UDP-galactopyran 80.3 0.26 5.6E-06 42.2 -1.9 78 87-174 7-95 (204)
143 PRK14694 putative mercuric red 79.5 4.8 0.0001 39.6 6.4 40 130-170 232-271 (468)
144 PRK12266 glpD glycerol-3-phosp 79.1 4.2 9E-05 40.5 5.9 44 129-172 168-216 (508)
145 KOG1346 Programmed cell death 79.1 1.6 3.5E-05 41.3 2.7 40 130-169 407-446 (659)
146 PF13434 K_oxygenase: L-lysine 78.6 3.4 7.3E-05 38.8 4.8 39 131-169 294-338 (341)
147 TIGR02374 nitri_red_nirB nitri 78.3 4.8 0.0001 42.5 6.2 47 124-170 189-236 (785)
148 TIGR01813 flavo_cyto_c flavocy 78.2 5.5 0.00012 38.8 6.4 41 130-170 144-190 (439)
149 PRK12831 putative oxidoreducta 77.8 2.4 5.3E-05 41.6 3.7 41 314-356 422-462 (464)
150 PRK08274 tricarballylate dehyd 77.5 5.4 0.00012 39.2 6.1 54 116-169 126-189 (466)
151 PRK06175 L-aspartate oxidase; 77.5 5.7 0.00012 38.7 6.2 49 122-170 133-187 (433)
152 PRK13748 putative mercuric red 77.1 5.8 0.00013 40.0 6.3 40 130-170 324-363 (561)
153 PRK13369 glycerol-3-phosphate 76.6 5.5 0.00012 39.6 5.9 44 129-172 168-215 (502)
154 PRK06370 mercuric reductase; V 76.5 6.5 0.00014 38.6 6.4 41 130-170 226-269 (463)
155 PRK08244 hypothetical protein; 76.1 6.3 0.00014 39.0 6.2 41 130-170 114-157 (493)
156 PRK06481 fumarate reductase fl 75.9 7.5 0.00016 38.7 6.6 40 130-169 204-248 (506)
157 TIGR01438 TGR thioredoxin and 75.9 6.9 0.00015 38.7 6.3 41 130-170 234-277 (484)
158 PF00890 FAD_binding_2: FAD bi 75.3 6.1 0.00013 38.1 5.7 52 119-170 139-201 (417)
159 PRK06467 dihydrolipoamide dehy 74.9 6.9 0.00015 38.5 6.1 46 125-170 223-272 (471)
160 TIGR02053 MerA mercuric reduct 74.9 7.3 0.00016 38.2 6.2 41 130-170 221-264 (463)
161 PF13434 K_oxygenase: L-lysine 74.4 5 0.00011 37.7 4.6 48 122-169 99-156 (341)
162 PRK06134 putative FAD-binding 73.9 8.2 0.00018 39.2 6.4 42 130-171 231-277 (581)
163 PRK06115 dihydrolipoamide dehy 73.0 8.1 0.00018 38.0 6.0 41 130-170 229-274 (466)
164 TIGR03385 CoA_CoA_reduc CoA-di 72.9 8.2 0.00018 37.4 6.0 39 130-170 193-231 (427)
165 PRK12845 3-ketosteroid-delta-1 72.8 8.5 0.00018 38.9 6.2 53 116-169 213-275 (564)
166 PRK09564 coenzyme A disulfide 72.8 9.1 0.0002 37.3 6.3 40 130-170 205-244 (444)
167 PTZ00318 NADH dehydrogenase-li 72.6 7.9 0.00017 37.6 5.7 37 130-170 242-278 (424)
168 TIGR03169 Nterm_to_SelD pyridi 72.5 7.2 0.00016 36.8 5.4 37 130-170 205-241 (364)
169 KOG1439 RAB proteins geranylge 72.2 8.2 0.00018 36.5 5.3 56 113-169 224-286 (440)
170 PRK06912 acoL dihydrolipoamide 72.2 10 0.00023 37.1 6.6 41 130-170 225-266 (458)
171 PRK14989 nitrite reductase sub 72.1 9.2 0.0002 40.7 6.5 48 123-170 193-243 (847)
172 PRK09754 phenylpropionate diox 72.0 6.1 0.00013 37.9 4.8 41 129-171 71-111 (396)
173 TIGR03385 CoA_CoA_reduc CoA-di 70.9 7.3 0.00016 37.7 5.1 41 130-170 58-101 (427)
174 PRK12809 putative oxidoreducta 70.7 6.6 0.00014 40.4 4.9 42 314-357 596-637 (639)
175 PRK07538 hypothetical protein; 70.7 9 0.0002 36.9 5.7 41 132-172 120-165 (413)
176 PRK08071 L-aspartate oxidase; 70.4 7 0.00015 39.0 4.9 48 123-170 132-188 (510)
177 PF00732 GMC_oxred_N: GMC oxid 70.3 6.8 0.00015 35.7 4.5 47 123-169 199-255 (296)
178 KOG2404 Fumarate reductase, fl 70.2 8.5 0.00018 35.4 4.8 38 132-169 161-203 (477)
179 PRK11101 glpA sn-glycerol-3-ph 69.9 12 0.00026 37.6 6.6 43 130-172 163-211 (546)
180 PRK05976 dihydrolipoamide dehy 69.7 12 0.00027 36.8 6.5 42 130-171 235-280 (472)
181 COG0578 GlpA Glycerol-3-phosph 69.6 1.3E+02 0.0028 30.2 16.0 48 125-172 173-225 (532)
182 PRK12769 putative oxidoreducta 69.4 5.2 0.00011 41.2 3.9 40 314-355 613-652 (654)
183 TIGR03377 glycerol3P_GlpA glyc 69.0 11 0.00024 37.6 6.0 43 130-172 142-190 (516)
184 PRK12810 gltD glutamate syntha 69.0 7 0.00015 38.5 4.6 40 314-355 426-465 (471)
185 TIGR03862 flavo_PP4765 unchara 68.8 6.4 0.00014 37.5 4.0 39 315-353 333-374 (376)
186 PF01494 FAD_binding_3: FAD bi 68.7 8.5 0.00018 35.7 4.9 42 130-171 125-171 (356)
187 TIGR01316 gltA glutamate synth 68.3 5.9 0.00013 38.8 3.8 38 314-353 411-448 (449)
188 COG1252 Ndh NADH dehydrogenase 68.2 9.2 0.0002 36.7 4.9 42 125-170 217-260 (405)
189 PLN02697 lycopene epsilon cycl 68.0 13 0.00028 37.2 6.2 42 130-172 206-248 (529)
190 PRK06292 dihydrolipoamide dehy 68.0 14 0.00029 36.3 6.4 41 130-170 223-266 (460)
191 PRK09564 coenzyme A disulfide 67.9 9.3 0.0002 37.2 5.2 42 130-171 70-114 (444)
192 TIGR02374 nitri_red_nirB nitri 67.8 7.4 0.00016 41.1 4.7 40 130-171 68-107 (785)
193 COG2072 TrkA Predicted flavopr 66.4 12 0.00025 36.7 5.4 39 132-170 100-142 (443)
194 PRK12842 putative succinate de 66.2 15 0.00032 37.3 6.4 41 315-355 521-568 (574)
195 TIGR02028 ChlP geranylgeranyl 66.1 9.5 0.00021 36.6 4.7 37 319-355 270-309 (398)
196 COG1635 THI4 Ribulose 1,5-bisp 66.0 5.6 0.00012 34.6 2.7 40 316-355 216-260 (262)
197 PRK12843 putative FAD-binding 65.2 15 0.00033 37.2 6.2 42 315-356 526-574 (578)
198 PRK11749 dihydropyrimidine deh 65.2 8.3 0.00018 37.8 4.2 40 315-356 414-453 (457)
199 PRK13512 coenzyme A disulfide 65.2 14 0.0003 36.0 5.8 44 123-170 195-239 (438)
200 PRK12770 putative glutamate sy 65.1 8.9 0.00019 36.1 4.3 38 316-355 313-350 (352)
201 KOG2614 Kynurenine 3-monooxyge 65.0 77 0.0017 30.4 10.1 36 320-355 289-327 (420)
202 PRK05192 tRNA uridine 5-carbox 64.8 16 0.00035 37.1 6.1 41 130-171 115-156 (618)
203 TIGR00551 nadB L-aspartate oxi 64.5 13 0.00028 36.8 5.5 49 123-171 134-188 (488)
204 PLN02661 Putative thiazole syn 64.3 8 0.00017 36.4 3.7 41 316-356 284-329 (357)
205 COG0492 TrxB Thioredoxin reduc 64.0 15 0.00033 33.8 5.5 41 314-355 261-301 (305)
206 KOG1335 Dihydrolipoamide dehyd 63.9 16 0.00034 34.6 5.3 40 130-169 266-311 (506)
207 PRK12775 putative trifunctiona 63.6 13 0.00029 40.4 5.6 41 314-356 716-756 (1006)
208 PRK04176 ribulose-1,5-biphosph 63.4 9.5 0.00021 34.2 3.9 39 318-356 213-256 (257)
209 TIGR01292 TRX_reduct thioredox 63.3 6.8 0.00015 35.5 3.1 37 316-353 263-299 (300)
210 PRK07573 sdhA succinate dehydr 63.1 17 0.00038 37.3 6.2 41 130-170 184-230 (640)
211 PTZ00058 glutathione reductase 62.6 20 0.00043 36.2 6.4 41 130-170 292-334 (561)
212 TIGR01789 lycopene_cycl lycope 62.4 14 0.00029 35.2 5.0 46 122-171 90-137 (370)
213 KOG1399 Flavin-containing mono 62.3 18 0.00039 35.3 5.8 51 121-171 90-152 (448)
214 TIGR01318 gltD_gamma_fam gluta 61.6 13 0.00027 36.7 4.7 39 314-354 427-465 (467)
215 PRK07843 3-ketosteroid-delta-1 61.5 20 0.00044 36.2 6.3 38 315-352 511-555 (557)
216 PRK12834 putative FAD-binding 61.2 21 0.00045 36.0 6.3 38 315-352 501-548 (549)
217 PRK13512 coenzyme A disulfide 61.1 12 0.00027 36.4 4.6 42 130-171 72-116 (438)
218 PRK04965 NADH:flavorubredoxin 61.0 12 0.00027 35.4 4.5 39 130-171 72-110 (377)
219 PRK12771 putative glutamate sy 60.9 12 0.00025 37.9 4.5 39 315-355 406-444 (564)
220 TIGR01317 GOGAT_sm_gam glutama 60.5 12 0.00025 37.1 4.3 41 314-356 440-480 (485)
221 TIGR00292 thiazole biosynthesi 60.0 12 0.00027 33.4 4.0 37 318-354 212-253 (254)
222 PRK05945 sdhA succinate dehydr 59.8 23 0.00049 36.0 6.3 49 122-170 136-195 (575)
223 PF06100 Strep_67kDa_ant: Stre 59.8 59 0.0013 32.1 8.6 29 319-347 469-499 (500)
224 PRK12778 putative bifunctional 59.2 11 0.00024 39.6 4.1 39 315-355 712-750 (752)
225 TIGR01812 sdhA_frdA_Gneg succi 58.9 25 0.00054 35.5 6.5 41 130-170 143-189 (566)
226 PRK07512 L-aspartate oxidase; 58.8 16 0.00034 36.6 4.9 41 130-170 151-195 (513)
227 PRK14989 nitrite reductase sub 58.6 14 0.0003 39.4 4.6 40 130-171 73-112 (847)
228 TIGR01816 sdhA_forward succina 58.2 13 0.00029 37.6 4.3 49 122-170 120-179 (565)
229 PRK07121 hypothetical protein; 57.8 28 0.0006 34.5 6.5 38 315-352 446-489 (492)
230 PRK10262 thioredoxin reductase 57.7 18 0.0004 33.4 4.9 41 130-170 199-246 (321)
231 PRK12779 putative bifunctional 57.6 13 0.00028 40.1 4.3 39 315-355 589-627 (944)
232 PF07992 Pyr_redox_2: Pyridine 57.5 9.7 0.00021 32.2 2.8 50 122-171 63-121 (201)
233 PLN00093 geranylgeranyl diphos 57.4 15 0.00033 36.0 4.4 37 318-354 308-347 (450)
234 PRK06452 sdhA succinate dehydr 57.0 24 0.00051 35.8 5.9 41 130-170 150-196 (566)
235 TIGR02023 BchP-ChlP geranylger 56.9 17 0.00037 34.7 4.7 37 319-355 264-303 (388)
236 PRK12814 putative NADPH-depend 56.6 16 0.00034 37.8 4.6 41 314-356 462-502 (652)
237 PRK12842 putative succinate de 56.6 10 0.00023 38.4 3.3 50 121-170 214-273 (574)
238 PRK09078 sdhA succinate dehydr 56.4 16 0.00034 37.3 4.6 40 315-354 382-428 (598)
239 TIGR03169 Nterm_to_SelD pyridi 56.3 12 0.00026 35.3 3.5 39 130-171 68-106 (364)
240 PRK12837 3-ketosteroid-delta-1 56.2 26 0.00057 34.9 6.0 41 130-170 188-233 (513)
241 TIGR03140 AhpF alkyl hydropero 55.9 25 0.00054 35.1 5.8 47 124-170 394-448 (515)
242 PRK12844 3-ketosteroid-delta-1 55.7 27 0.00058 35.3 6.0 40 315-354 504-550 (557)
243 PRK08401 L-aspartate oxidase; 55.1 27 0.00058 34.4 5.8 48 122-171 121-174 (466)
244 PLN02546 glutathione reductase 55.1 31 0.00067 34.8 6.3 41 130-170 307-348 (558)
245 TIGR01816 sdhA_forward succina 54.9 32 0.00069 34.8 6.4 39 316-354 351-396 (565)
246 TIGR00292 thiazole biosynthesi 54.3 43 0.00094 29.9 6.5 42 130-171 114-169 (254)
247 PLN02464 glycerol-3-phosphate 53.1 2.8E+02 0.006 28.6 20.2 43 130-172 246-296 (627)
248 TIGR03143 AhpF_homolog putativ 52.7 21 0.00047 36.0 4.8 44 315-359 270-313 (555)
249 PRK06069 sdhA succinate dehydr 52.7 32 0.00068 35.0 6.0 50 122-171 142-199 (577)
250 PRK09231 fumarate reductase fl 52.6 32 0.00069 35.0 6.0 41 130-170 148-194 (582)
251 PLN00128 Succinate dehydrogena 52.6 20 0.00044 36.8 4.6 39 316-354 421-466 (635)
252 PRK08205 sdhA succinate dehydr 52.1 22 0.00047 36.2 4.7 40 315-354 372-418 (583)
253 KOG1336 Monodehydroascorbate/f 51.4 21 0.00046 34.6 4.2 40 130-171 141-180 (478)
254 KOG1336 Monodehydroascorbate/f 50.9 26 0.00055 34.1 4.6 42 130-171 269-312 (478)
255 PRK12843 putative FAD-binding 50.7 18 0.00039 36.8 3.9 41 130-170 235-280 (578)
256 PRK12844 3-ketosteroid-delta-1 49.9 18 0.00039 36.5 3.7 40 130-169 222-266 (557)
257 PRK04176 ribulose-1,5-biphosph 49.9 38 0.00083 30.3 5.5 41 130-170 118-171 (257)
258 PRK06452 sdhA succinate dehydr 49.9 26 0.00056 35.5 4.8 40 316-355 357-404 (566)
259 PRK12839 hypothetical protein; 49.6 44 0.00096 33.9 6.4 39 315-353 522-567 (572)
260 PRK08205 sdhA succinate dehydr 49.5 42 0.00091 34.1 6.3 41 130-170 154-204 (583)
261 PRK08275 putative oxidoreducta 49.4 42 0.00091 33.9 6.3 40 314-354 365-404 (554)
262 TIGR01811 sdhA_Bsu succinate d 49.4 42 0.00091 34.3 6.3 40 315-354 380-425 (603)
263 PRK09853 putative selenate red 49.2 20 0.00044 38.7 4.1 38 315-354 804-841 (1019)
264 PRK13984 putative oxidoreducta 49.1 23 0.0005 36.1 4.4 39 314-355 564-602 (604)
265 PRK06263 sdhA succinate dehydr 49.1 34 0.00074 34.4 5.6 40 315-354 358-403 (543)
266 TIGR02485 CobZ_N-term precorri 49.1 23 0.00049 34.4 4.2 39 315-353 384-429 (432)
267 TIGR03315 Se_ygfK putative sel 48.8 19 0.00042 38.9 3.9 37 315-353 802-838 (1012)
268 PTZ00139 Succinate dehydrogena 48.8 22 0.00047 36.5 4.1 40 315-354 399-445 (617)
269 PRK07804 L-aspartate oxidase; 48.8 36 0.00079 34.2 5.7 49 122-170 145-208 (541)
270 PRK12835 3-ketosteroid-delta-1 48.5 46 0.001 33.9 6.4 40 315-354 524-570 (584)
271 PRK12839 hypothetical protein; 48.5 20 0.00043 36.3 3.8 40 130-169 228-273 (572)
272 PRK07803 sdhA succinate dehydr 48.3 39 0.00084 34.7 5.9 40 131-170 166-211 (626)
273 PRK06069 sdhA succinate dehydr 48.1 24 0.00051 35.8 4.3 39 316-354 369-414 (577)
274 PRK08626 fumarate reductase fl 48.0 43 0.00094 34.6 6.2 41 130-170 172-218 (657)
275 PTZ00153 lipoamide dehydrogena 47.9 44 0.00094 34.6 6.1 42 129-170 367-425 (659)
276 PRK12835 3-ketosteroid-delta-1 47.8 24 0.00053 35.8 4.3 41 130-170 227-273 (584)
277 TIGR02360 pbenz_hydroxyl 4-hyd 47.8 39 0.00085 32.3 5.6 34 319-352 279-315 (390)
278 PRK06134 putative FAD-binding 47.8 18 0.0004 36.7 3.4 40 315-354 525-571 (581)
279 PRK06481 fumarate reductase fl 47.6 21 0.00046 35.5 3.8 40 315-354 458-503 (506)
280 PRK06854 adenylylsulfate reduc 47.5 47 0.001 34.0 6.3 44 313-356 390-433 (608)
281 PF03486 HI0933_like: HI0933-l 47.3 19 0.00042 34.7 3.3 33 316-348 373-408 (409)
282 TIGR01810 betA choline dehydro 47.3 24 0.00052 35.4 4.2 41 130-170 208-253 (532)
283 PRK08958 sdhA succinate dehydr 47.0 28 0.00062 35.4 4.6 39 316-354 378-423 (588)
284 PRK09078 sdhA succinate dehydr 46.9 48 0.001 33.9 6.2 49 122-170 150-210 (598)
285 PTZ00318 NADH dehydrogenase-li 46.4 25 0.00054 34.1 4.0 41 316-356 306-349 (424)
286 PRK08274 tricarballylate dehyd 46.0 26 0.00056 34.4 4.1 40 316-355 416-462 (466)
287 PRK08641 sdhA succinate dehydr 45.7 30 0.00065 35.2 4.6 41 315-355 365-411 (589)
288 COG2081 Predicted flavoprotein 45.6 23 0.00049 33.7 3.3 39 315-353 365-406 (408)
289 PRK07121 hypothetical protein; 45.4 25 0.00054 34.9 3.9 51 120-170 176-237 (492)
290 PRK12810 gltD glutamate syntha 45.0 46 0.00099 32.8 5.7 43 128-170 341-398 (471)
291 PRK10262 thioredoxin reductase 44.9 17 0.00036 33.7 2.5 42 314-356 275-316 (321)
292 TIGR01812 sdhA_frdA_Gneg succi 44.8 31 0.00067 34.9 4.6 40 316-355 357-403 (566)
293 PRK07803 sdhA succinate dehydr 44.8 18 0.00039 37.1 2.8 39 316-354 403-447 (626)
294 COG1251 NirB NAD(P)H-nitrite r 44.6 27 0.00058 36.0 3.9 39 130-170 73-111 (793)
295 PRK06263 sdhA succinate dehydr 44.6 31 0.00068 34.7 4.5 41 130-170 148-195 (543)
296 PRK06116 glutathione reductase 44.6 27 0.00058 34.1 4.0 37 314-352 291-327 (450)
297 PRK05675 sdhA succinate dehydr 44.1 34 0.00074 34.7 4.7 50 121-170 126-187 (570)
298 COG0446 HcaD Uncharacterized N 43.9 49 0.0011 31.4 5.6 42 130-171 192-236 (415)
299 PRK09231 fumarate reductase fl 43.8 34 0.00073 34.8 4.6 41 315-355 368-415 (582)
300 TIGR01421 gluta_reduc_1 glutat 43.8 29 0.00063 33.9 4.0 36 314-351 291-326 (450)
301 TIGR02462 pyranose_ox pyranose 43.3 46 0.001 33.4 5.4 41 130-170 228-277 (544)
302 TIGR00136 gidA glucose-inhibit 43.2 64 0.0014 32.9 6.3 40 131-171 112-153 (617)
303 PRK07843 3-ketosteroid-delta-1 43.2 25 0.00054 35.5 3.6 40 130-169 222-266 (557)
304 COG0445 GidA Flavin-dependent 43.1 24 0.00052 35.1 3.2 37 135-171 119-157 (621)
305 COG3486 IucD Lysine/ornithine 43.0 55 0.0012 31.4 5.4 40 132-171 294-339 (436)
306 TIGR01176 fum_red_Fp fumarate 42.8 58 0.0013 33.1 6.1 41 130-170 147-193 (580)
307 PTZ00306 NADH-dependent fumara 42.8 50 0.0011 36.7 6.0 43 315-357 857-905 (1167)
308 PF12831 FAD_oxidored: FAD dep 42.7 8.1 0.00018 37.5 0.0 56 120-175 92-153 (428)
309 KOG2844 Dimethylglycine dehydr 42.7 36 0.00079 34.7 4.4 84 88-172 145-243 (856)
310 PRK05945 sdhA succinate dehydr 42.0 38 0.00081 34.4 4.6 40 315-354 367-413 (575)
311 TIGR01424 gluta_reduc_2 glutat 41.8 31 0.00067 33.7 3.9 37 314-352 289-325 (446)
312 PRK13984 putative oxidoreducta 41.7 53 0.0011 33.5 5.7 50 121-170 467-536 (604)
313 PRK15317 alkyl hydroperoxide r 41.6 23 0.0005 35.4 3.0 43 314-357 472-514 (517)
314 PRK12845 3-ketosteroid-delta-1 41.5 27 0.00058 35.4 3.5 37 315-351 519-562 (564)
315 PRK09077 L-aspartate oxidase; 41.4 35 0.00077 34.2 4.3 39 315-353 363-408 (536)
316 PRK12834 putative FAD-binding 41.3 30 0.00064 34.9 3.7 39 130-168 166-223 (549)
317 PRK05675 sdhA succinate dehydr 40.9 71 0.0015 32.4 6.4 39 316-354 360-405 (570)
318 PRK12814 putative NADPH-depend 40.4 66 0.0014 33.2 6.2 50 121-170 366-435 (652)
319 PF04820 Trp_halogenase: Trypt 40.1 58 0.0013 32.0 5.5 53 119-172 155-211 (454)
320 PTZ00139 Succinate dehydrogena 40.0 74 0.0016 32.7 6.4 40 130-169 180-226 (617)
321 PRK06175 L-aspartate oxidase; 39.9 36 0.00077 33.2 4.0 39 316-354 342-387 (433)
322 PRK14727 putative mercuric red 39.1 33 0.00071 33.9 3.6 37 314-352 309-345 (479)
323 PRK07395 L-aspartate oxidase; 38.6 47 0.001 33.5 4.7 41 130-170 149-195 (553)
324 PRK07512 L-aspartate oxidase; 38.5 46 0.00099 33.2 4.6 40 315-354 351-397 (513)
325 PRK12837 3-ketosteroid-delta-1 38.4 26 0.00057 34.9 2.8 37 315-351 466-509 (513)
326 TIGR01423 trypano_reduc trypan 37.8 40 0.00086 33.4 4.0 37 314-352 314-350 (486)
327 PRK11749 dihydropyrimidine deh 37.8 61 0.0013 31.7 5.3 42 129-170 324-385 (457)
328 PRK07057 sdhA succinate dehydr 37.7 41 0.00088 34.3 4.1 39 316-354 381-426 (591)
329 PRK13748 putative mercuric red 37.7 35 0.00077 34.4 3.7 36 314-351 391-426 (561)
330 COG1251 NirB NAD(P)H-nitrite r 37.6 29 0.00062 35.8 2.9 48 123-170 193-241 (793)
331 COG3486 IucD Lysine/ornithine 37.0 64 0.0014 30.9 4.8 51 119-169 99-154 (436)
332 TIGR00551 nadB L-aspartate oxi 36.9 46 0.001 32.9 4.3 39 315-353 343-388 (488)
333 PRK05335 tRNA (uracil-5-)-meth 36.9 50 0.0011 32.1 4.3 35 317-354 329-363 (436)
334 PRK14694 putative mercuric red 36.4 39 0.00085 33.2 3.7 37 314-352 298-334 (468)
335 PRK15458 tagatose 6-phosphate 36.1 85 0.0018 30.2 5.6 63 297-361 57-124 (426)
336 PRK02106 choline dehydrogenase 36.0 53 0.0012 33.2 4.6 40 130-169 215-259 (560)
337 PRK08071 L-aspartate oxidase; 35.9 49 0.0011 33.0 4.3 39 315-353 342-387 (510)
338 TIGR02023 BchP-ChlP geranylger 35.4 75 0.0016 30.2 5.4 40 130-170 106-153 (388)
339 PRK06370 mercuric reductase; V 35.3 46 0.00099 32.6 4.0 38 313-352 296-333 (463)
340 PRK15052 D-tagatose-1,6-bispho 35.2 91 0.002 29.9 5.6 63 297-361 54-121 (421)
341 PLN02507 glutathione reductase 34.9 43 0.00094 33.3 3.7 37 314-352 326-362 (499)
342 TIGR00275 flavoprotein, HI0933 34.8 28 0.00061 33.4 2.3 32 316-347 365-399 (400)
343 TIGR01176 fum_red_Fp fumarate 34.8 50 0.0011 33.6 4.2 40 315-354 367-413 (580)
344 PRK07818 dihydrolipoamide dehy 34.5 45 0.00097 32.8 3.7 37 314-352 299-335 (466)
345 TIGR03143 AhpF_homolog putativ 33.9 96 0.0021 31.3 6.1 39 130-170 74-112 (555)
346 PRK08958 sdhA succinate dehydr 33.8 1.1E+02 0.0023 31.3 6.4 50 122-171 144-205 (588)
347 PRK05249 soluble pyridine nucl 33.7 46 0.00099 32.6 3.7 37 314-352 298-334 (461)
348 PLN02661 Putative thiazole syn 33.7 1.1E+02 0.0025 28.8 6.0 49 121-169 176-241 (357)
349 COG2509 Uncharacterized FAD-de 33.4 45 0.00097 32.4 3.3 39 314-354 445-483 (486)
350 TIGR02810 agaZ_gatZ D-tagatose 33.2 1E+02 0.0023 29.5 5.6 63 297-361 53-120 (420)
351 TIGR01811 sdhA_Bsu succinate d 33.1 66 0.0014 32.9 4.7 40 130-169 147-193 (603)
352 PRK06292 dihydrolipoamide dehy 32.9 47 0.001 32.5 3.6 37 314-352 294-330 (460)
353 COG1249 Lpd Pyruvate/2-oxoglut 32.8 56 0.0012 32.0 4.0 37 314-352 298-334 (454)
354 PRK06467 dihydrolipoamide dehy 32.7 47 0.001 32.7 3.5 37 314-352 300-336 (471)
355 KOG1346 Programmed cell death 32.5 55 0.0012 31.5 3.7 47 123-171 264-310 (659)
356 PRK12770 putative glutamate sy 32.1 91 0.002 29.2 5.3 49 122-170 215-284 (352)
357 KOG3851 Sulfide:quinone oxidor 31.9 37 0.00081 31.4 2.4 60 110-171 79-144 (446)
358 COG1252 Ndh NADH dehydrogenase 31.6 77 0.0017 30.5 4.6 39 318-356 291-333 (405)
359 PTZ00306 NADH-dependent fumara 31.2 52 0.0011 36.6 3.9 40 130-169 561-617 (1167)
360 COG4716 Myosin-crossreactive a 31.2 77 0.0017 30.1 4.3 60 2-62 112-172 (587)
361 PF08013 Tagatose_6_P_K: Tagat 30.4 1E+02 0.0022 29.7 5.0 79 279-361 41-124 (424)
362 PRK06115 dihydrolipoamide dehy 30.2 55 0.0012 32.2 3.6 37 314-352 301-337 (466)
363 PRK06416 dihydrolipoamide dehy 29.8 58 0.0013 31.8 3.7 37 314-352 297-333 (462)
364 PRK08401 L-aspartate oxidase; 29.6 74 0.0016 31.3 4.4 38 315-352 320-364 (466)
365 PRK06327 dihydrolipoamide dehy 29.6 60 0.0013 32.0 3.7 37 314-352 310-346 (475)
366 KOG0405 Pyridine nucleotide-di 29.6 98 0.0021 29.2 4.7 54 116-169 224-284 (478)
367 TIGR02053 MerA mercuric reduct 29.3 61 0.0013 31.7 3.7 37 314-352 292-328 (463)
368 TIGR01316 gltA glutamate synth 29.1 1.3E+02 0.0029 29.3 6.1 43 128-170 321-385 (449)
369 TIGR03452 mycothione_red mycot 29.1 61 0.0013 31.7 3.7 37 314-352 291-327 (452)
370 PRK06854 adenylylsulfate reduc 29.0 93 0.002 31.8 5.1 40 131-170 148-193 (608)
371 PRK08275 putative oxidoreducta 28.7 76 0.0016 32.0 4.3 41 130-170 151-198 (554)
372 PLN00128 Succinate dehydrogena 28.5 1.2E+02 0.0026 31.3 5.7 41 130-170 201-248 (635)
373 PRK08626 fumarate reductase fl 28.4 87 0.0019 32.4 4.7 39 317-355 385-430 (657)
374 PRK07057 sdhA succinate dehydr 28.3 1.4E+02 0.0029 30.5 6.1 49 122-170 149-209 (591)
375 PRK12831 putative oxidoreducta 28.0 1.4E+02 0.0031 29.3 6.0 46 125-170 327-394 (464)
376 PRK07845 flavoprotein disulfid 27.8 68 0.0015 31.5 3.7 37 314-352 300-336 (466)
377 TIGR01318 gltD_gamma_fam gluta 27.7 1.5E+02 0.0032 29.2 6.1 46 125-170 329-396 (467)
378 PRK07846 mycothione reductase; 27.6 69 0.0015 31.3 3.7 37 314-352 288-324 (451)
379 TIGR01350 lipoamide_DH dihydro 27.5 68 0.0015 31.4 3.7 36 315-352 296-331 (461)
380 PLN02815 L-aspartate oxidase 27.3 98 0.0021 31.6 4.8 40 315-354 387-433 (594)
381 PLN02546 glutathione reductase 27.3 67 0.0014 32.5 3.6 37 314-352 376-412 (558)
382 TIGR01438 TGR thioredoxin and 27.2 78 0.0017 31.3 4.0 38 314-352 306-343 (484)
383 TIGR01372 soxA sarcosine oxida 26.6 1.2E+02 0.0025 33.2 5.5 40 130-169 365-408 (985)
384 PF01494 FAD_binding_3: FAD bi 26.5 99 0.0021 28.4 4.5 36 319-354 291-329 (356)
385 PRK09077 L-aspartate oxidase; 26.4 1.5E+02 0.0032 29.8 5.9 48 123-170 144-205 (536)
386 PF01134 GIDA: Glucose inhibit 26.2 70 0.0015 30.7 3.3 34 318-354 355-388 (392)
387 PLN02815 L-aspartate oxidase 25.4 98 0.0021 31.6 4.4 40 130-169 170-219 (594)
388 PRK07573 sdhA succinate dehydr 24.6 1.2E+02 0.0026 31.3 4.9 35 315-349 416-456 (640)
389 PLN02852 ferredoxin-NADP+ redu 24.3 81 0.0018 31.3 3.5 41 315-356 383-423 (491)
390 PRK07190 hypothetical protein; 24.2 99 0.0021 30.6 4.2 34 319-352 275-311 (487)
391 PRK12771 putative glutamate sy 24.2 2E+02 0.0043 29.1 6.4 50 121-170 310-378 (564)
392 PRK06912 acoL dihydrolipoamide 24.2 83 0.0018 30.8 3.6 36 314-351 293-328 (458)
393 COG3573 Predicted oxidoreducta 23.7 16 0.00034 33.9 -1.4 36 315-351 503-549 (552)
394 TIGR02360 pbenz_hydroxyl 4-hyd 23.1 1.1E+02 0.0025 29.0 4.3 42 130-171 117-162 (390)
395 TIGR01372 soxA sarcosine oxida 23.0 1.1E+02 0.0023 33.6 4.4 35 318-355 438-472 (985)
396 PRK06847 hypothetical protein; 22.7 1E+02 0.0022 29.0 3.8 33 319-351 282-317 (375)
397 PTZ00052 thioredoxin reductase 22.0 1.2E+02 0.0026 30.2 4.2 37 315-352 304-340 (499)
398 COG0492 TrxB Thioredoxin reduc 21.9 99 0.0021 28.5 3.4 49 122-172 62-115 (305)
399 PF03550 LolB: Outer membrane 21.5 1.4E+02 0.0031 24.3 4.0 27 135-161 41-67 (157)
400 PF11423 Repressor_Mnt: Regula 20.8 79 0.0017 17.7 1.5 25 251-275 3-27 (30)
401 PRK08010 pyridine nucleotide-d 20.3 1.2E+02 0.0025 29.5 3.8 36 314-351 280-315 (441)
402 COG0029 NadB Aspartate oxidase 20.3 1.2E+02 0.0027 29.8 3.7 55 120-174 136-199 (518)
403 PRK09853 putative selenate red 20.2 2E+02 0.0043 31.5 5.5 49 122-171 713-778 (1019)
No 1
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=2.3e-48 Score=377.32 Aligned_cols=342 Identities=82% Similarity=1.333 Sum_probs=293.2
Q ss_pred ceeEEcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHhhhhhcC
Q 016772 13 SYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFA 92 (383)
Q Consensus 13 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (383)
++.+++..++++|++....+...+..+++...+.......|+|+++++++++.+.+.++.++++++++++++.++.++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (435)
T PLN02268 93 SYALFDMDGNQVPQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFA 172 (435)
T ss_pred ccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhC
Confidence 45566778889999888888777777776665543334568999999987765544344456888999888777788899
Q ss_pred CCCCccChhccccccccCCCceeccCChHHHHHHHHccCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 93 ADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 93 ~~~~~~S~~~~~~~~~~~g~~~~~~gG~~~l~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
.+++++|+..+..+..+.|.+..+.+||++|+++|+++++|++|++|++|.+.+++|.|++.+|+++.||+||+|+|+++
T Consensus 173 ~~~~~ls~~~~~~~~~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~ 252 (435)
T PLN02268 173 ADADTISLKSWDQEELLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGV 252 (435)
T ss_pred CChHhCchhhcCCccccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHH
Confidence 99999999887654445666778999999999999999999999999999999999999999998899999999999999
Q ss_pred HhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCCCCCCcceeecCCCCceeEeeeccCCCCCceEEEEecchhh
Q 016772 173 LKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLA 252 (383)
Q Consensus 173 l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a 252 (383)
|+...+.|.|+||+.++++++++.|++..|+++.|+++||++..++|.+.+....+.++.+.....+.++|++++.|+.+
T Consensus 253 l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a 332 (435)
T PLN02268 253 LKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLA 332 (435)
T ss_pred HhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHH
Confidence 98766889999999999999999999999999999999998767777766544445555555445567788899999988
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCCCC
Q 016772 253 RDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSY 332 (383)
Q Consensus 253 ~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~~~ 332 (383)
..+.+++++++++.++++|.++||...+|+.+.+++|..|||++|+|++..+|.....++.+++|+++||||||+|+..+
T Consensus 333 ~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~ 412 (435)
T PLN02268 333 RDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDF 412 (435)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcc
Confidence 99999999999999999999999876789999999999999999999998999877778889999999999999999988
Q ss_pred CchhhHHHHHHHHHHHHHHHHH
Q 016772 333 PGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 333 ~g~v~gA~~SG~~aA~~i~~~l 354 (383)
.|+||||++||+|||++|++.|
T Consensus 413 ~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 413 PGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred cccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 2
>PLN02976 amine oxidase
Probab=100.00 E-value=4.7e-46 Score=380.30 Aligned_cols=353 Identities=35% Similarity=0.594 Sum_probs=281.4
Q ss_pred ccccccccCCceeEEcCCCCccCHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCcHHHHHHHHHccCc------h----
Q 016772 3 GVAEDIYSFCSYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRP------E---- 69 (383)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~s~~~~l~~~~~~~~------~---- 69 (383)
|+...........+....|.++|.+....+...+..+++....... ....|+|++++|...+.+.. .
T Consensus 774 Gl~l~~~~~~~~~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~~~~~~~~~~~~~ 853 (1713)
T PLN02976 774 GLELTVLNSDCPLYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMPRPGVDIDET 853 (1713)
T ss_pred CCccccccCCCceeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhhhccccccccchh
Confidence 3333333333334455889999999999998888888876643211 23358899999985332110 0
Q ss_pred ----------------------------hhhhhHHHHHHHHHHHhhhhhcCCCCCccChhcccc---ccccCCCceeccC
Q 016772 70 ----------------------------LRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDK---EELLPGGHGLMVR 118 (383)
Q Consensus 70 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~---~~~~~g~~~~~~g 118 (383)
.-.....+.+++|++..+...++.+++++|+.++.. +..+.|.++.+.|
T Consensus 854 ~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~fgG~~~rIkG 933 (1713)
T PLN02976 854 ELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGAHCMIKG 933 (1713)
T ss_pred hcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhcccccccCCCceEEeCC
Confidence 001123345566666544444688999999988763 2345667888999
Q ss_pred ChHHHHHHHHccCCcccCceeEEEEec----------CCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHH
Q 016772 119 GYLPVINTLAKGLDIRLGHRVTKITRH----------YIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 188 (383)
Q Consensus 119 G~~~l~~~L~~~l~I~l~~~V~~I~~~----------~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~ 188 (383)
||++|+++|++.++|+||++|++|.+. +++|.|+|.+|+++.||+||+|+|+++|+...+.|.|+||..+
T Consensus 934 GYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~K 1013 (1713)
T PLN02976 934 GYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWK 1013 (1713)
T ss_pred CHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHH
Confidence 999999999999999999999999984 3679999999989999999999999999876789999999999
Q ss_pred HHHHhhcCCcccceEEEEcCCCCCCC-CCcceeecCC---CCceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHH
Q 016772 189 EAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDT---SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAA 264 (383)
Q Consensus 189 ~~ai~~~~~~~~~kv~l~~~~~~w~~-~~~~g~~~~~---~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~ 264 (383)
.++|++++||.+.||+|.|+++||+. .+++|..... ...+..+++...+.+.++|++|+.|..+..+..+++++++
T Consensus 1014 qaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~V 1093 (1713)
T PLN02976 1014 YSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHV 1093 (1713)
T ss_pred HHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHH
Confidence 99999999999999999999999975 4667754321 1112334444445566799999999988889999999999
Q ss_pred HHHHHHHHHhCCC--CCCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCCC-EEEeccccCCCCCchhhHHHH
Q 016772 265 NFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFS 341 (383)
Q Consensus 265 ~~v~~~L~~~~~~--~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~-l~faG~~~~~~~~g~v~gA~~ 341 (383)
+.++++|+++||. .+.|..+.+++|..|||++|+|++..+|.....+..+++|+++ |||||++|+..|+||||||++
T Consensus 1094 e~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIe 1173 (1713)
T PLN02976 1094 NHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMM 1173 (1713)
T ss_pred HHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHH
Confidence 9999999999985 4689999999999999999999999999877778889999976 999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 016772 342 TGLMAAEDCRMRVL 355 (383)
Q Consensus 342 SG~~aA~~i~~~l~ 355 (383)
||+|||++|+..+.
T Consensus 1174 SG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1174 SGLREAVRIIDILN 1187 (1713)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 3
>PLN03000 amine oxidase
Probab=100.00 E-value=3.9e-46 Score=372.59 Aligned_cols=353 Identities=31% Similarity=0.480 Sum_probs=280.4
Q ss_pred CccccccccCCceeEEcCCCCccCHHHHHHHHHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHccCchhhhhhHHHH
Q 016772 2 YGVAEDIYSFCSYALFDMDGNQVPQELVTKVGEAFESILKETDKVR---EEHDEDMSIQRAISIVFDRRPELRLEGLAHK 78 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~s~~~~l~~~~~~~~~~~~~~~~~~ 78 (383)
+|+...... +.+.+|..+|++++++....+...+..+++.+.+.+ .....|+|++++++.+.... ..........
T Consensus 259 lgl~l~~~~-~~~~ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D~SLg~aLe~~~~~~-g~~~t~e~~~ 336 (881)
T PLN03000 259 LGSSLYKVR-DKCPLYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQVS-GNDVATEEMG 336 (881)
T ss_pred cCCceeecC-CCCeEEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcCCcHHHHHHHHHHHH-cccCCHHHHH
Confidence 345444333 345567789999998877776666777766554432 22345889988765322111 0001122345
Q ss_pred HHHHHHHhhhhhcCCCCCccChhccccc--cccCCCceeccCChHHHHHHHHccCCcccCceeEEEEecCCeeEEEECCC
Q 016772 79 VLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGG 156 (383)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~S~~~~~~~--~~~~g~~~~~~gG~~~l~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~G 156 (383)
+++|++..++..++.+.+.+|+..+.+. ..+.+.++.++|||++|+++|++.++|++|++|++|.+.+++|.|++.++
T Consensus 337 Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~~~dgV~V~~~~~ 416 (881)
T PLN03000 337 LFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQ 416 (881)
T ss_pred HHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhCCcccCCcEEEEEECCCeEEEEECCc
Confidence 6677766566667788888888776542 23456688899999999999999999999999999999999999987654
Q ss_pred cEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCCCC-CCcceeecCCCC---ceeEee
Q 016772 157 KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSY---GCSYFL 232 (383)
Q Consensus 157 ~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-~~~~g~~~~~~~---~~~~~~ 232 (383)
++.||+||+|+|+++|+...|.|.|+||+.++++|++++||.+.||++.|+++||+. .+.+|.+.+... ....++
T Consensus 417 -~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~ 495 (881)
T PLN03000 417 -VYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFY 495 (881)
T ss_pred -EEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEe
Confidence 799999999999999998789999999999999999999999999999999999964 477888754321 123344
Q ss_pred eccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCC----CCCCcEEEEccCCCCCCCCCcCCCCCCCCCh
Q 016772 233 NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSH 308 (383)
Q Consensus 233 ~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~----~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~ 308 (383)
+..+..+.++|++|+.|+.+..++.++++++++.++++|+++|+. .++|+.+.+++|.+|||++|+|++..+|...
T Consensus 496 s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~ 575 (881)
T PLN03000 496 SYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASG 575 (881)
T ss_pred CCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCch
Confidence 444445677999999999999999999999999999999999962 4678999999999999999999999999887
Q ss_pred HHHHHHhCCC--CCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 016772 309 DLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 357 (383)
Q Consensus 309 ~~~~~~~~p~--~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~ 357 (383)
..++.+++|+ ++||||||+|+..|+||||||++||+|||++|++.+..+
T Consensus 576 ~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~ 626 (881)
T PLN03000 576 DDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKAR 626 (881)
T ss_pred HHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhc
Confidence 7889999996 589999999999899999999999999999999987643
No 4
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1.3e-44 Score=360.95 Aligned_cols=351 Identities=32% Similarity=0.498 Sum_probs=277.9
Q ss_pred CccccccccCCceeEEcCCCCccCHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCcHHHHHHHHHccCchhhhhhHHHH
Q 016772 2 YGVAEDIYSFCSYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHDEDMSIQRAISIVFDRRPELRLEGLAHK 78 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~s~~~~l~~~~~~~~~~~~~~~~~~ 78 (383)
+|+..... +..+.+|..+|.+++.+....+...+..+++...+... ....|+|+++++++...... .......++
T Consensus 235 lgl~~~~~-~~~~~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~-~~~t~~e~~ 312 (738)
T PLN02529 235 LSIPLHKV-RDNCPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYG-VARSTEERQ 312 (738)
T ss_pred hCCCcccc-CCCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhhhc-cCCCHHHHH
Confidence 45555544 34566788899999887666555556666655433221 23458899999975321110 011234567
Q ss_pred HHHHHHHhhhhhcCCCCCccChhccccc--cccCCCceeccCChHHHHHHHHccCCcccCceeEEEEecCCeeEEEECCC
Q 016772 79 VLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGG 156 (383)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~S~~~~~~~--~~~~g~~~~~~gG~~~l~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~G 156 (383)
+++|++..++..++.+++.+|+..|.+. ..+.|.+..+.|||++|+++|+++++|+||++|++|.+.+++|+|++. +
T Consensus 313 ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t~-~ 391 (738)
T PLN02529 313 LLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIAG-S 391 (738)
T ss_pred HHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEEC-C
Confidence 8888876666777888999999887643 334567889999999999999999999999999999999999999864 4
Q ss_pred cEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCCCC-CCcceeecCCC--C-ceeEee
Q 016772 157 KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTS--Y-GCSYFL 232 (383)
Q Consensus 157 ~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-~~~~g~~~~~~--~-~~~~~~ 232 (383)
+++.||+||+|+|+++|++..+.|.|+||+.++++|++++||++.||++.|+++||++ .+.+|.+.... . ....+.
T Consensus 392 ~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~ 471 (738)
T PLN02529 392 QVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFY 471 (738)
T ss_pred EEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEe
Confidence 5799999999999999997778999999999999999999999999999999999964 45777764321 1 122233
Q ss_pred eccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCC----CCCCcEEEEccCCCCCCCCCcCCCCCCCCCh
Q 016772 233 NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKSH 308 (383)
Q Consensus 233 ~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~----~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~ 308 (383)
+.....+.++|++|+.|+.+..+..++++++++.++++|+++|+. .+.|..+..++|.+|||++|+|++..++...
T Consensus 472 ~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~ 551 (738)
T PLN02529 472 GYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSG 551 (738)
T ss_pred cCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCch
Confidence 333344557899999999999999999999999999999999963 3578899999999999999999998887765
Q ss_pred HHHHHHhCCC-CCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 309 DLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 309 ~~~~~~~~p~-~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
..+..+++|+ ++||||||+|+..|+|+||||++||+|||++|++.+.
T Consensus 552 ~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 552 SDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVAR 599 (738)
T ss_pred hHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHh
Confidence 5567788885 7899999999999999999999999999999998764
No 5
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=4.7e-44 Score=358.21 Aligned_cols=352 Identities=30% Similarity=0.491 Sum_probs=279.0
Q ss_pred ccccccccCCceeEEcCCCCccCHHHHHHHHHHHHHHHHHHHHHHh-----hCCCCCcHHHHHHHHHccCchhhhhhHHH
Q 016772 3 GVAEDIYSFCSYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE-----EHDEDMSIQRAISIVFDRRPELRLEGLAH 77 (383)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~s~~~~l~~~~~~~~~~~~~~~~~ 77 (383)
|+.....+ ..+.+|..+|..++......+...+..+++...+.+. ....|+|++++++++- +..+...+...+
T Consensus 314 gl~~~~~~-~~~~~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D~SLg~~le~~~-~~~~~~~~~~e~ 391 (808)
T PLN02328 314 GLPLHKVR-DICPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFR-HVYKVAEDPQER 391 (808)
T ss_pred CCceEecC-CCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccCcCHHHHHHHHh-hhhccCCCHHHH
Confidence 44433332 4566777889998877766666666777665433321 1335889999997531 111111123345
Q ss_pred HHHHHHHHhhhhhcCCCCCccChhccccc--cccCCCceeccCChHHHHHHHHccCCcccCceeEEEEecCCeeEEEECC
Q 016772 78 KVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEG 155 (383)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~~--~~~~g~~~~~~gG~~~l~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~ 155 (383)
.+++|++..++..++.+.+.+|+..+.+. ..+.+.++.+.|||++|+++|++.++|++|++|++|.+.+++|.|+ .+
T Consensus 392 ~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dgV~V~-~~ 470 (808)
T PLN02328 392 MLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIVY-AG 470 (808)
T ss_pred HHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCeEEEE-eC
Confidence 67787776666677888888998776532 2344668889999999999999999999999999999999998884 56
Q ss_pred CcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCCCC-CCcceeecCCCC--c-eeEe
Q 016772 156 GKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSY--G-CSYF 231 (383)
Q Consensus 156 G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-~~~~g~~~~~~~--~-~~~~ 231 (383)
|+++.||+||+|+|+++|+...+.|.|+||+.++++|++++||++.||++.|+++||+. .+.+|.+.+... . ...+
T Consensus 471 G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf 550 (808)
T PLN02328 471 GQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLF 550 (808)
T ss_pred CeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEE
Confidence 77899999999999999987778999999999999999999999999999999999964 466787754221 1 2334
Q ss_pred eeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCC----CCCCcEEEEccCCCCCCCCCcCCCCCCCCC
Q 016772 232 LNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQYLVSHWGTDANSLGSYSYDTVGKS 307 (383)
Q Consensus 232 ~~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~----~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~ 307 (383)
++.....+.++|++|++|+.+..+.+++++++++.++++|+++|+. .+.|..+.+++|.++||++|+|++..+|..
T Consensus 551 ~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~ 630 (808)
T PLN02328 551 YSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSS 630 (808)
T ss_pred ecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCc
Confidence 4444445667999999999999999999999999999999999963 357899999999999999999999999887
Q ss_pred hHHHHHHhCCC--CCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 016772 308 HDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 357 (383)
Q Consensus 308 ~~~~~~~~~p~--~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~ 357 (383)
...++.+++|+ ++||||||+|+..++|+||||++||+|||++|++.+..+
T Consensus 631 ~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~ 682 (808)
T PLN02328 631 GDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRR 682 (808)
T ss_pred hhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhc
Confidence 66778888985 589999999999889999999999999999999987655
No 6
>PLN02676 polyamine oxidase
Probab=100.00 E-value=1.1e-41 Score=331.69 Aligned_cols=345 Identities=27% Similarity=0.406 Sum_probs=255.0
Q ss_pred CccccccccCC--ceeEEcCCCCccCHHHHHHHHHHHHHHHHHHHHHHh----hCCCCCcHHHH--HHHHHccCchhhhh
Q 016772 2 YGVAEDIYSFC--SYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE----EHDEDMSIQRA--ISIVFDRRPELRLE 73 (383)
Q Consensus 2 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~s~~~~--l~~~~~~~~~~~~~ 73 (383)
+|+.....+++ ...+|..+|+.++.+....+...+..+.+.+..... ...+|.|+.+. +.+.+ ..
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---~~---- 173 (487)
T PLN02676 101 LKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQRLFGQV---PK---- 173 (487)
T ss_pred cCCceeecCccccceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHHHHhhC---CC----
Confidence 45555444333 455677788888876655555555544443322221 12346676433 32211 00
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCCccChhcccc---ccccCCCceec--cCChHHHHHHHHccC-----------CcccCc
Q 016772 74 GLAHKVLQWYLCRMEGWFAADAETISLKSWDK---EELLPGGHGLM--VRGYLPVINTLAKGL-----------DIRLGH 137 (383)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~---~~~~~g~~~~~--~gG~~~l~~~L~~~l-----------~I~l~~ 137 (383)
.......+++.. ...++.+++++|+..+.. +...++...++ ++|+++|+++|++.+ +|+||+
T Consensus 174 ~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~ 251 (487)
T PLN02676 174 TPLEMVIDYYNY--DYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNK 251 (487)
T ss_pred CHHHHHHHHHhc--cceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCC
Confidence 111122332221 123688999999987542 12233345555 689999999999854 499999
Q ss_pred eeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCCCCC-C
Q 016772 138 RVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-E 216 (383)
Q Consensus 138 ~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~-~ 216 (383)
+|++|.+++++|+|+|.+|++++||+||+|+|+++|+...+.|.|+||+.++++++++.||...|+++.|+++||++. .
T Consensus 252 ~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~ 331 (487)
T PLN02676 252 VVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPG 331 (487)
T ss_pred EeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCC
Confidence 999999999999999999989999999999999999876789999999999999999999999999999999999752 2
Q ss_pred cceeecCC-CCc-eeEeeecc-CCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCC-CCCCcEEEEccCCCC
Q 016772 217 FLGVVSDT-SYG-CSYFLNLH-KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTD 292 (383)
Q Consensus 217 ~~g~~~~~-~~~-~~~~~~~~-~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~-~~~~~~~~~~~W~~~ 292 (383)
..+..... ... ...+.... .+++.++|++++.++.+..+..+++++.++.++++|+++||. .+.|+.+..++|.+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~d 411 (487)
T PLN02676 332 TEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPEATDILVPRWWSN 411 (487)
T ss_pred ceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCcceEEecccCCC
Confidence 22221111 110 01111111 123446888888898888999999999999999999999975 678899999999999
Q ss_pred CCCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 293 ANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 293 ~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
||++|+|++.++|......+.+++|+++||||||+|+..|.|+||||++||+|||++|++.+.
T Consensus 412 p~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 412 RFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred CCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999987777889999999999999999998999999999999999999998764
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=2.1e-41 Score=331.94 Aligned_cols=341 Identities=30% Similarity=0.395 Sum_probs=258.5
Q ss_pred CceeEEcCCCCccCHHHHHHHHHHHHHHHHHHHHHH---------------------hhCCCCCcHHHHHHHHHcc----
Q 016772 12 CSYALFDMDGNQVPQELVTKVGEAFESILKETDKVR---------------------EEHDEDMSIQRAISIVFDR---- 66 (383)
Q Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~d~s~~~~l~~~~~~---- 66 (383)
+...+++.+|..++++....+...+..+++...... .....+.|+++|+++.+.+
T Consensus 98 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l~~~~~~ 177 (539)
T PLN02568 98 DRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGLDAYWDS 177 (539)
T ss_pred ccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHHHHHHhh
Confidence 356788999999999998888888888876543211 0012356999999875532
Q ss_pred Cchhh--------hhh-HHHHHHHHHHHhhhhhcCCCCCccChhccc---cccccCCCceeccCChHHHHHHHHccCC--
Q 016772 67 RPELR--------LEG-LAHKVLQWYLCRMEGWFAADAETISLKSWD---KEELLPGGHGLMVRGYLPVINTLAKGLD-- 132 (383)
Q Consensus 67 ~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~---~~~~~~g~~~~~~gG~~~l~~~L~~~l~-- 132 (383)
..+.. .++ ..+.++.++.. ++. ...++.++|...+. .+..+.|.+..+.||+++|+++|++.++
T Consensus 178 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~e~-~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~ 255 (539)
T PLN02568 178 VSADEQIKGYGGWSRKLLEEAIFTMHEN-TQR-TYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLPPG 255 (539)
T ss_pred cccchhhccccchhHHHHHHHHHHHHHH-hhc-cccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhCCCC
Confidence 10000 001 11233333332 221 23556665555432 2334566788899999999999999885
Q ss_pred -cccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcC----CcccCCCCcHHHHHHHhhcCCcccceEEEEc
Q 016772 133 -IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKAR----TIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 207 (383)
Q Consensus 133 -I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~----~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~ 207 (383)
|++|++|++|.+.+++|+|++.+|+++.||+||+|+|+++|+.. .+.|.|+||+.++++|++++||.+.|+++.|
T Consensus 256 ~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f 335 (539)
T PLN02568 256 TIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVEL 335 (539)
T ss_pred EEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEe
Confidence 99999999999999999999999988999999999999999863 2589999999999999999999999999999
Q ss_pred CCCCCCC------CCcceeecCCCC------ceeEee----eccC-CCCCceEEEEecchhhHHHhcCCHHHHHHHHHHH
Q 016772 208 DKVFWPN------VEFLGVVSDTSY------GCSYFL----NLHK-ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ 270 (383)
Q Consensus 208 ~~~~w~~------~~~~g~~~~~~~------~~~~~~----~~~~-~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~ 270 (383)
+++||.. ...++.+..... ...++. +..+ ..+.++|++|+.|+.|..++.++++++++.+++.
T Consensus 336 ~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~ 415 (539)
T PLN02568 336 SPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTT 415 (539)
T ss_pred cCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHH
Confidence 9999852 112222211110 001110 1111 2356799999999999999999999999999999
Q ss_pred HHHhCCC-C----------------------CCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCC--------
Q 016772 271 LKKILPD-A----------------------SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-------- 319 (383)
Q Consensus 271 L~~~~~~-~----------------------~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~-------- 319 (383)
|+++||. . ..|+.+.+++|.+|||++|+|++.++|.....++.+++|++
T Consensus 416 L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~ 495 (539)
T PLN02568 416 LSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQA 495 (539)
T ss_pred HHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHHHhCccccccccccc
Confidence 9999974 1 35789999999999999999999999988777889999975
Q ss_pred -----CEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 016772 320 -----NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 320 -----~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
+||||||+|+..|+||||||++||+|||++|++..
T Consensus 496 ~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 496 GGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred cCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999998764
No 8
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2e-40 Score=304.26 Aligned_cols=340 Identities=28% Similarity=0.367 Sum_probs=264.1
Q ss_pred eeEEcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHcc----Cchhh-hhhHHHHHHHHHHHhhh
Q 016772 14 YALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDR----RPELR-LEGLAHKVLQWYLCRME 88 (383)
Q Consensus 14 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~ 88 (383)
+.....+|+.+|....+.+.+....+....++. ...+..-|+++++...+.. ..+.. ...+..++++.|+....
T Consensus 109 ~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~SvG~~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~ 187 (498)
T KOG0685|consen 109 NFHTRSNGEVVPEELLDELNEITVTLSDKLREA-EIAHDEGSVGEYLNSEFWDELRGPENPEIDKTLAEEILNVYFKVEC 187 (498)
T ss_pred eeEEEecCccCcHHHHHHHHHHHHhhhhhcccc-cccCccccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhe
Confidence 445567899999999988887666555443321 1113456899998743322 11111 12456677777777655
Q ss_pred hhcCC-CCCccChhccccccccCC--CceeccCChHHHHHHHHccC-----------CcccCceeEEEEecC-CeeEEEE
Q 016772 89 GWFAA-DAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKGL-----------DIRLGHRVTKITRHY-IGVKVTV 153 (383)
Q Consensus 89 ~~~~~-~~~~~S~~~~~~~~~~~g--~~~~~~gG~~~l~~~L~~~l-----------~I~l~~~V~~I~~~~-~~v~V~~ 153 (383)
.+.++ +.+++|+..+..+..++| .......|+..+.+.|++.+ +|+++++|.+|.+++ +.|.|+|
T Consensus 188 ~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c 267 (498)
T KOG0685|consen 188 SITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRC 267 (498)
T ss_pred eeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEE
Confidence 66555 789999999887777777 56678899999999999854 266669999999986 5599999
Q ss_pred CCCcEEEcCEEEEecChHHHhcC-CcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCCCC-CCcceeecCCCC-----
Q 016772 154 EGGKTFVADAVVVAVPLGVLKAR-TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSY----- 226 (383)
Q Consensus 154 ~~G~~~~ad~VI~t~p~~~l~~~-~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-~~~~g~~~~~~~----- 226 (383)
.||+.+.||+||||+|+++|+.. ...|.|+||..|++||+++++|++.|+||.|++|||+. ...+..+.....
T Consensus 268 ~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r 347 (498)
T KOG0685|consen 268 SDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELR 347 (498)
T ss_pred eCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHh
Confidence 99999999999999999999974 34699999999999999999999999999999999964 344444432211
Q ss_pred --------ceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEEEccCCCCCCCC
Q 016772 227 --------GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSL 296 (383)
Q Consensus 227 --------~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~--~~~~~~~~~~~W~~~~~~~ 296 (383)
....|.... ....+|.+|+.|..+..+++++||++.+.++..|++++++ ++.|..+.++.|..+|+++
T Consensus 348 ~~~~~w~~~~~~f~~v~--~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~fr 425 (498)
T KOG0685|consen 348 STLDAWEEDIMGFQPVS--WAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFR 425 (498)
T ss_pred hhhHHHHhhceEEEEcC--cchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccC
Confidence 011222221 1235899999999999999999999999999999999984 8899999999999999999
Q ss_pred CcCCCCCCCCChHHHHHHhCCC--------CCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 297 GSYSYDTVGKSHDLYERLRIPV--------DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 297 g~y~~~~~g~~~~~~~~~~~p~--------~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
|+|||.++|........++.|+ +.|.||||+||..+++|+|||++||+|.|+++++....
T Consensus 426 GSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 426 GSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred ceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHh
Confidence 9999999987655555555442 25899999999999999999999999999999885443
No 9
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.2e-37 Score=294.45 Aligned_cols=282 Identities=48% Similarity=0.788 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCccChhccccccccCC--CceeccCChHHHHHHHHccCCcccCceeEEEEecCCe-eEE
Q 016772 75 LAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG-VKV 151 (383)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~g--~~~~~~gG~~~l~~~L~~~l~I~l~~~V~~I~~~~~~-v~V 151 (383)
....++.|++..++..+....+.++...+.....+++ .+..+.+|+..++.+|+++++|+++++|..|.+.+++ +.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~~~~~ 250 (501)
T KOG0029|consen 171 EADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDGAVKV 250 (501)
T ss_pred hhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEecCCceEE
Confidence 3445777877777777788888888888876544433 4688999999999999999999999999999998777 455
Q ss_pred EECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCC-CCCCcceeecCCCCcee-
Q 016772 152 TVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS- 229 (383)
Q Consensus 152 ~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w-~~~~~~g~~~~~~~~~~- 229 (383)
++.++..+.+|+||+|+|+++|+...+.|.|+||..+.++|+++++|.+.||.+.|++.|| ++.+++|.+........
T Consensus 251 ~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~ 330 (501)
T KOG0029|consen 251 TVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGL 330 (501)
T ss_pred EEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccch
Confidence 5555656999999999999999988899999999999999999999999999999999999 67788998876654444
Q ss_pred -EeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCC--CCCCCcEEEEccCCCCCCCCCcCCCCCCCC
Q 016772 230 -YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGK 306 (383)
Q Consensus 230 -~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~--~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~ 306 (383)
.|++..+..+.++|+.++.+..+..+..++++++++.++..|+++|+ ..++|++..+++|..++++.|+|++..++.
T Consensus 331 ~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~ 410 (501)
T KOG0029|consen 331 FTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGS 410 (501)
T ss_pred hhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCC
Confidence 45666666677789999999888999999999999999999999999 478999999999999999999999999988
Q ss_pred ChHHHHHHhCCCCC-EEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 307 SHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 307 ~~~~~~~~~~p~~~-l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
....++.+++|+.+ +||||++|...|.|+|+||+.||.++|..|++.+..
T Consensus 411 ~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 411 DGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred ChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 77778999999988 999999999999999999999999999999998873
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=259.93 Aligned_cols=239 Identities=27% Similarity=0.396 Sum_probs=203.4
Q ss_pred eeccCChHHHHHHHHccC--CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHH
Q 016772 114 GLMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAA 191 (383)
Q Consensus 114 ~~~~gG~~~l~~~L~~~l--~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~a 191 (383)
....|||+.|++++++.+ .|+++++|.+|.+.+++|+|++.+..++.+|+||||+|+.+|. .|.|.|.+|+.++++
T Consensus 202 ~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a 279 (450)
T COG1231 202 LQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQA 279 (450)
T ss_pred hccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHH
Confidence 334499999999999988 5999999999999999999999984589999999999999987 689999999999999
Q ss_pred HhhcCCcccceEEEEcCCCCCCCCC-cceeecCCCC-ceeEeeeccCCCCCceEEE-EecchhhHHHhcCCHHHHHHHHH
Q 016772 192 IDDLGVGIENKIIMHFDKVFWPNVE-FLGVVSDTSY-GCSYFLNLHKATGHCVLVY-MPAGQLARDIEKMSDEAAANFAF 268 (383)
Q Consensus 192 i~~~~~~~~~kv~l~~~~~~w~~~~-~~g~~~~~~~-~~~~~~~~~~~~g~~~l~~-~~~g~~a~~~~~~~~ee~~~~v~ 268 (383)
++.+.|++.+|+.+.|+++||++.+ +.|....+.. ....+++....+|..+|.. |..|+.+..|..+++++.++.++
T Consensus 280 ~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl 359 (450)
T COG1231 280 AKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVL 359 (450)
T ss_pred hcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHH
Confidence 9999999999999999999997766 5554432222 2222333222366777776 66688899999999999999999
Q ss_pred HHHHHhCCC-CCCCcEE-EEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCCCCCchhhHHHHHHHHH
Q 016772 269 TQLKKILPD-ASSPIQY-LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 346 (383)
Q Consensus 269 ~~L~~~~~~-~~~~~~~-~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~a 346 (383)
..+.++||+ ...+.+. ...+|.++||+.|++..+.+|+.....+.+..|.++|+|||+++.+.++|+++||++||++|
T Consensus 360 ~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~A 439 (450)
T COG1231 360 ARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRA 439 (450)
T ss_pred HhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHH
Confidence 999999995 5566655 77899999999998888999998888899999999999999777777899999999999999
Q ss_pred HHHHHHHH
Q 016772 347 AEDCRMRV 354 (383)
Q Consensus 347 A~~i~~~l 354 (383)
|.+|...+
T Consensus 440 A~ei~~~l 447 (450)
T COG1231 440 AAEIHALL 447 (450)
T ss_pred HHHHHHhh
Confidence 99998765
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.97 E-value=2.9e-29 Score=243.11 Aligned_cols=235 Identities=37% Similarity=0.538 Sum_probs=193.1
Q ss_pred eccCChHHHHHHHHc--cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHH
Q 016772 115 LMVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 192 (383)
Q Consensus 115 ~~~gG~~~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai 192 (383)
...|++..+...+.+ +.+|++|++|++|..++++|.|++.+|++++||+||+|+|+..+.. +.+.|++|..+++++
T Consensus 206 ~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~ 283 (450)
T PF01593_consen 206 VGMGGLSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAI 283 (450)
T ss_dssp EETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHH
T ss_pred ecccchhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccc
Confidence 345666666666665 3479999999999999999999999999999999999999999984 788999999999999
Q ss_pred hhcCCcccceEEEEcCCCCCCCC-CcceeecCCC--CceeEeeeccCC--CCCceEEEEecchhhHHHhcCCHHHHHHHH
Q 016772 193 DDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS--YGCSYFLNLHKA--TGHCVLVYMPAGQLARDIEKMSDEAAANFA 267 (383)
Q Consensus 193 ~~~~~~~~~kv~l~~~~~~w~~~-~~~g~~~~~~--~~~~~~~~~~~~--~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v 267 (383)
++++|.+..||++.|+.+||+.. ..++.+..+. ....+......+ .+..+++.++.++.+..+..++++++.+.+
T Consensus 284 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~ 363 (450)
T PF01593_consen 284 ENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERV 363 (450)
T ss_dssp HTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHH
T ss_pred cccccCcceeEEEeeecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHH
Confidence 99999999999999999999654 5666665443 222222222222 245688888888877889999999999999
Q ss_pred HHHHHHhCCC--CCCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCC-CCEEEeccccCCCCCchhhHHHHHHH
Q 016772 268 FTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGL 344 (383)
Q Consensus 268 ~~~L~~~~~~--~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~-~~l~faG~~~~~~~~g~v~gA~~SG~ 344 (383)
+++|+++++. .++|.++.+++|.++++..++|++..++.....++.+.+|+ +||||||+++++.+.|+++||+.||+
T Consensus 364 ~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~ 443 (450)
T PF01593_consen 364 LDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGR 443 (450)
T ss_dssp HHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHH
Confidence 9999999983 56778889999999999999999888776545788899999 59999999999987799999999999
Q ss_pred HHHHHHH
Q 016772 345 MAAEDCR 351 (383)
Q Consensus 345 ~aA~~i~ 351 (383)
+||++|+
T Consensus 444 ~aA~~il 450 (450)
T PF01593_consen 444 RAAEEIL 450 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999986
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.96 E-value=2.7e-28 Score=238.79 Aligned_cols=279 Identities=20% Similarity=0.280 Sum_probs=214.0
Q ss_pred CCCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhcccc-----c------------cc----
Q 016772 51 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK-----E------------EL---- 108 (383)
Q Consensus 51 ~~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~-----~------------~~---- 108 (383)
..|+|+.+|+++ .+++++.+.++.+ +.++|+.+++++|+.+... + ..
T Consensus 134 ~~d~s~~e~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 202 (462)
T TIGR00562 134 GKDESVEEFVRR-----------RFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQ 202 (462)
T ss_pred CCCcCHHHHHHH-----------hcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCc
Confidence 457999999986 3566788878776 7899999999999875320 0 00
Q ss_pred ------c---CCC-ceeccCChHHHHHHHHccC---CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhc
Q 016772 109 ------L---PGG-HGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA 175 (383)
Q Consensus 109 ------~---~g~-~~~~~gG~~~l~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~ 175 (383)
+ .+. ..++.||+++|+++|++.+ +|++|++|++|.+++++|.|++.+|+++.||+||+|+|++.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ 282 (462)
T TIGR00562 203 GSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG 282 (462)
T ss_pred cccccccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH
Confidence 0 111 3568999999999999876 49999999999999899999888888899999999999999864
Q ss_pred CCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCCCC-CCcceeecCCCC----ceeEeeec----cCCCCCceEEEE
Q 016772 176 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-VEFLGVVSDTSY----GCSYFLNL----HKATGHCVLVYM 246 (383)
Q Consensus 176 ~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-~~~~g~~~~~~~----~~~~~~~~----~~~~g~~~l~~~ 246 (383)
. .|++|+...++++++.|+++.++.+.|++++|+. ...+|++.+... ....+++. ..+++..+++++
T Consensus 283 l----l~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~ 358 (462)
T TIGR00562 283 L----LSELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAY 358 (462)
T ss_pred H----hcccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEE
Confidence 3 3668888889999999999999999999998853 355777765431 12223321 124556678888
Q ss_pred ecchhhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEccCCCCCCCCCcCCCCCCCCChHHH----HHHhCCCCCEE
Q 016772 247 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLY----ERLRIPVDNLF 322 (383)
Q Consensus 247 ~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~----~~~~~p~~~l~ 322 (383)
+.+..+..+.+++++++++.++++|.++++....|..+.+++|. ++.+.| .+|+. ... +.+..+.++|+
T Consensus 359 ~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~---~a~P~~---~~g~~-~~~~~i~~~l~~~~~~l~ 431 (462)
T TIGR00562 359 IGGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWH---RAIPQY---HVGHD-QRLKEARELLESAYPGVF 431 (462)
T ss_pred eCCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEcc---ccCCCC---CCChH-HHHHHHHHHHHhhCCCEE
Confidence 88877777888999999999999999999754458888999994 444444 55542 222 23445557999
Q ss_pred EeccccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 016772 323 FAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 323 faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
+||+++.. .++++|+.||.++|++|++.+
T Consensus 432 l~G~~~~g---~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 432 LTGNSFEG---VGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred EeccccCC---CcHHHHHHHHHHHHHHHHHhh
Confidence 99999864 489999999999999998764
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.96 E-value=5.1e-28 Score=236.69 Aligned_cols=277 Identities=15% Similarity=0.194 Sum_probs=203.9
Q ss_pred CCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhccc-c---c---------------ccc--
Q 016772 52 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD-K---E---------------ELL-- 109 (383)
Q Consensus 52 ~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~-~---~---------------~~~-- 109 (383)
+++|+.+|+++ .+++++.+.++.+ +.++|+.+++++|+.+.. . . ..+
T Consensus 144 ~~~sv~~~l~~-----------~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 212 (463)
T PRK12416 144 KDTSLALFLES-----------FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQS 212 (463)
T ss_pred CCCCHHHHHHH-----------hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCC
Confidence 57899999986 3466677777776 678899999999986421 1 0 000
Q ss_pred C--CCceeccCChHHHHHHHHccC---CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCC
Q 016772 110 P--GGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRL 184 (383)
Q Consensus 110 ~--g~~~~~~gG~~~l~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~L 184 (383)
. ....+++|||++|+++|++.+ +|++|++|++|++++++|.|++.+|+.+.||+||+|+|++++.. +.+.|++
T Consensus 213 ~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l 290 (463)
T PRK12416 213 AGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNEL 290 (463)
T ss_pred CCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcch
Confidence 1 124578999999999999987 49999999999999999999888888899999999999999864 3455655
Q ss_pred cHHHHHHHhhcCCcccceEEEEcCCCCCC-CCCcceeecCCCCc----eeEeee-ccC--CCCCceEEE-Eec--chhhH
Q 016772 185 PDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSYG----CSYFLN-LHK--ATGHCVLVY-MPA--GQLAR 253 (383)
Q Consensus 185 p~~~~~ai~~~~~~~~~kv~l~~~~~~w~-~~~~~g~~~~~~~~----~~~~~~-~~~--~~g~~~l~~-~~~--g~~a~ 253 (383)
+ ..++++.+.++.++++.|+.++|. ..+.+|++.+.... ...+.+ ... .++..+++. ++. ++.++
T Consensus 291 ~----~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~ 366 (463)
T PRK12416 291 N----EQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYE 366 (463)
T ss_pred h----HHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCch
Confidence 4 356788899999999999988773 23567887654321 111211 111 223345544 443 35667
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEccCCCCCCCCCcCCCCCCCCChH---HHHHHhCCCCCEEEeccccCC
Q 016772 254 DIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHD---LYERLRIPVDNLFFAGEATSM 330 (383)
Q Consensus 254 ~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~---~~~~~~~p~~~l~faG~~~~~ 330 (383)
.+.+++++++.+.++++|+++||...+|+.+.+++|.. +.+.| .+++... ..+.+..+.++|++||+++.+
T Consensus 367 ~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~---a~P~y---~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g 440 (463)
T PRK12416 367 TIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKD---LMPKY---HLEHNQAVQSLQEKMMNLYPNIYLAGASYYG 440 (463)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccc---cCCCc---CcCHHHHHHHHHHHHHhhCCCeEEecccccc
Confidence 78889999999999999999998766888999999954 34444 3443221 123445566899999999876
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHH
Q 016772 331 SYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 331 ~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
.+|++|+.||+++|++|++.+
T Consensus 441 ---~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 441 ---VGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999998764
No 14
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.96 E-value=1.5e-27 Score=230.66 Aligned_cols=274 Identities=23% Similarity=0.274 Sum_probs=194.5
Q ss_pred CCCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhccccc--c-cc----CCCceeccCChHH
Q 016772 51 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKE--E-LL----PGGHGLMVRGYLP 122 (383)
Q Consensus 51 ~~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~~--~-~~----~g~~~~~~gG~~~ 122 (383)
..++|+.+|+++.+ +++++.+.++.+ +.+.|+.+++++|+.++... . .. .....+++||+++
T Consensus 128 ~~~~s~~~~l~~~~----------~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 197 (419)
T TIGR03467 128 LDDTTVGDWLQAAG----------QSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSE 197 (419)
T ss_pred cCCCCHHHHHHHcC----------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHH
Confidence 45789999998632 355677767776 67889999999999865421 1 11 1235678899988
Q ss_pred HHHH-HHc-----cCCcccCceeEEEEecCCeeEEEE-CCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhc
Q 016772 123 VINT-LAK-----GLDIRLGHRVTKITRHYIGVKVTV-EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 195 (383)
Q Consensus 123 l~~~-L~~-----~l~I~l~~~V~~I~~~~~~v~V~~-~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~ 195 (383)
++.. |++ +.+|++|++|++|..++++|.++. .+|+.+.||+||+|+|++++..+. |+ +.+.++++++
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll----~~--~~~~~~l~~~ 271 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLL----PG--EDLGALLTAL 271 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhC----CC--chHHHHHhhc
Confidence 6644 654 457999999999999988866543 467789999999999999987531 22 1456788999
Q ss_pred CCcccceEEEEcCCCCCCCCCcceeecCCCCceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhC
Q 016772 196 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL 275 (383)
Q Consensus 196 ~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~ 275 (383)
.|+++.++++.|++++|.+.+..+..... ....+.....+.....+.+++.+ +..+..++++++.+.++++|.+++
T Consensus 272 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~ 347 (419)
T TIGR03467 272 GYSPITTVHLRLDRAVRLPAPMVGLVGGL--AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAF 347 (419)
T ss_pred CCcceEEEEEEeCCCcCCCCCeeeecCCc--eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998655555654321 12222222222223455555443 456778899999999999999999
Q ss_pred CCC--CCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHH
Q 016772 276 PDA--SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 276 ~~~--~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~ 351 (383)
|.. ..+....+.+|....+ .+ .+|.. ..++.+.+|.++||||||+++++++++||||+.||.+||++|+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~-----~~-~~g~~-~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 348 PRVAGAKPLWARVIKEKRATF-----AA-TPGLN-RLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred CccccCCccceEEEEccCCcc-----cc-CCccc-ccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 863 3455556667754332 22 23321 2334456788999999999999888999999999999999886
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=99.95 E-value=6.1e-27 Score=231.11 Aligned_cols=280 Identities=19% Similarity=0.242 Sum_probs=205.5
Q ss_pred CCCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhccccc-----c------------c----
Q 016772 51 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKE-----E------------L---- 108 (383)
Q Consensus 51 ~~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~~-----~------------~---- 108 (383)
..|+|+.+|+++ ++++++++.++.+ +.++|+.+++++|+...... . .
T Consensus 143 ~~~~sv~~~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~ 211 (496)
T PLN02576 143 GREESVGEFVRR-----------HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAK 211 (496)
T ss_pred CCCCcHHHHHHH-----------hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhc
Confidence 468999999987 4577888888887 78999999999999753210 0 0
Q ss_pred ---------------cCCCceeccCChHHHHHHHHccCC---cccCceeEEEEecCCe-eEEEE--CCC-cEEEcCEEEE
Q 016772 109 ---------------LPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIG-VKVTV--EGG-KTFVADAVVV 166 (383)
Q Consensus 109 ---------------~~g~~~~~~gG~~~l~~~L~~~l~---I~l~~~V~~I~~~~~~-v~V~~--~~G-~~~~ad~VI~ 166 (383)
..+....++|||++|+++|++.+. |++|++|++|++.+++ |.|++ .+| +++.||+||+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~ 291 (496)
T PLN02576 212 KNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVM 291 (496)
T ss_pred ccccccccccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEE
Confidence 001246789999999999999874 9999999999998886 65544 355 3699999999
Q ss_pred ecChHHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCCCC-------CCcceeecCCCCc---e-eEeeec-
Q 016772 167 AVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN-------VEFLGVVSDTSYG---C-SYFLNL- 234 (383)
Q Consensus 167 t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~-------~~~~g~~~~~~~~---~-~~~~~~- 234 (383)
|+|+.++..+. +++++...+++.++.|.++.+|.+.|++++|.. ...+|.+.+.... . ..+.+.
T Consensus 292 a~P~~~l~~ll----~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~ 367 (496)
T PLN02576 292 TAPLYVVSEML----RPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSL 367 (496)
T ss_pred CCCHHHHHHHh----cccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCc
Confidence 99999988542 335566788999999999999999999998853 2356665443211 1 122221
Q ss_pred c---CCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEEEccCCCCCCCCCcCCCCCCCCChH
Q 016772 235 H---KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHD 309 (383)
Q Consensus 235 ~---~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~--~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~ 309 (383)
. .+++..++++|+++..+..+.+++++++.+.++++|++++|. ...|....+++|.. +.+.| .+|+..
T Consensus 368 ~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~---a~P~~---~~g~~~- 440 (496)
T PLN02576 368 FPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPK---AIPQY---LLGHLD- 440 (496)
T ss_pred CCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCc---ccCCC---CcCHHH-
Confidence 1 134455677888887778888899999999999999999984 23677777889953 33333 444422
Q ss_pred HHHHHh---CCC--CCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 310 LYERLR---IPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 310 ~~~~~~---~p~--~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
..+.+. .+. ++|++||+++.. .++++|+.||.++|++|++.+.
T Consensus 441 ~~~~~~~~l~~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 441 VLEAAEKMEKDLGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred HHHHHHHHHHhcCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 222222 222 699999999985 4899999999999999987753
No 16
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.95 E-value=1.5e-25 Score=218.87 Aligned_cols=275 Identities=20% Similarity=0.230 Sum_probs=196.5
Q ss_pred CCCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhcccc--------cc-----------c--
Q 016772 51 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK--------EE-----------L-- 108 (383)
Q Consensus 51 ~~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~--------~~-----------~-- 108 (383)
..|+|+++|+.+ .+++.+++.++.+ +.++|+.+++++|+..... .. .
T Consensus 138 ~~~~s~~e~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (451)
T PRK11883 138 GQDQSVGAFFRR-----------RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEK 206 (451)
T ss_pred CCCcCHHHHHHH-----------hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccC
Confidence 457899999976 3456677777776 6789999999999865310 00 0
Q ss_pred -cCC-CceeccCChHHHHHHHHccCC---cccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCC
Q 016772 109 -LPG-GHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 183 (383)
Q Consensus 109 -~~g-~~~~~~gG~~~l~~~L~~~l~---I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~ 183 (383)
..+ ...+++|||++|+++|++.++ |++|++|++|..++++|.|++.+|+++.||+||+|+|++++..+ .+.
T Consensus 207 ~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~~~-- 282 (451)
T PRK11883 207 KKTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--FVA-- 282 (451)
T ss_pred CCCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--ccC--
Confidence 012 235789999999999999774 99999999999998899888888989999999999999998864 222
Q ss_pred CcHHHHHHHhhcCCcccceEEEEcCCCCCCCCCcceeecCC--CCc--eeEeeec----cCCCCCceEEEEecchhhHHH
Q 016772 184 LPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT--SYG--CSYFLNL----HKATGHCVLVYMPAGQLARDI 255 (383)
Q Consensus 184 Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~--~~~--~~~~~~~----~~~~g~~~l~~~~~g~~a~~~ 255 (383)
+...++++++.|+++.++++.|+++++.....++++.+. ... ...+.+. ..+++..++..+.+.......
T Consensus 283 --~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~ 360 (451)
T PRK11883 283 --PPAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAV 360 (451)
T ss_pred --hhHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchh
Confidence 234678899999999999999999864333445554332 111 1112221 123344344444433333445
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCC---CCCEEEeccccCCCC
Q 016772 256 EKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP---VDNLFFAGEATSMSY 332 (383)
Q Consensus 256 ~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p---~~~l~faG~~~~~~~ 332 (383)
..++++++++.++++|+++++....+..+.+++|.. +|+...++. ......+..+ +++|||||+++.+
T Consensus 361 ~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~------a~p~~~~~~-~~~~~~l~~~l~~~~~l~~aG~~~~g-- 431 (451)
T PRK11883 361 VDATDEELVAFVLADLSKVMGITGDPEFTIVQRWKE------AMPQYGVGH-IERVAELRAGLPHYPGLYVAGASFEG-- 431 (451)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCc------cCCCCCccH-HHHHHHHHHhhhhCCCEEEECcccCC--
Confidence 678999999999999999998545677888999954 344445554 2333333332 5699999999864
Q ss_pred CchhhHHHHHHHHHHHHHHH
Q 016772 333 PGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 333 ~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++++|+.||+++|++|++
T Consensus 432 -~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 432 -VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred -ccHHHHHHHHHHHHHHHHh
Confidence 4799999999999999875
No 17
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.95 E-value=4.4e-26 Score=215.17 Aligned_cols=314 Identities=21% Similarity=0.261 Sum_probs=229.0
Q ss_pred CceeEEcCCCCccCHHHHHHHHHHHHH----HHHHHHHHH----hhCCCCCcHHHHHHHHHccCchhhhhhHHHHHHHHH
Q 016772 12 CSYALFDMDGNQVPQELVTKVGEAFES----ILKETDKVR----EEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWY 83 (383)
Q Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 83 (383)
.+|+|++++.+++|...++.++..... +.....+.. .....|.|+++|+++ ++++++++.+
T Consensus 85 ~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~-----------~fG~ev~~~~ 153 (444)
T COG1232 85 RKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRR-----------RFGEEVVERF 153 (444)
T ss_pred cceEeeCCcEEECCccceeecCCccccchhHHHHHHHhhhcccCCCCCCCcCHHHHHHH-----------HHhHHHHHHH
Confidence 458999999999999888877654331 111222221 234579999999987 6799999999
Q ss_pred HHh-hhhhcCCCCCccChhccc-c----c---ccc---------------CCCceeccCChHHHHHHHHccC--CcccCc
Q 016772 84 LCR-MEGWFAADAETISLKSWD-K----E---ELL---------------PGGHGLMVRGYLPVINTLAKGL--DIRLGH 137 (383)
Q Consensus 84 ~~~-~~~~~~~~~~~~S~~~~~-~----~---~~~---------------~g~~~~~~gG~~~l~~~L~~~l--~I~l~~ 137 (383)
+.+ ++++|+++++++|+..+. . + ... .+...+++||+++|+++|++.+ +|++++
T Consensus 154 ~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~ 233 (444)
T COG1232 154 IEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGT 233 (444)
T ss_pred HHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhceeecc
Confidence 988 899999999999998422 1 0 000 1235678999999999999977 488999
Q ss_pred eeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCC-CCCC
Q 016772 138 RVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVE 216 (383)
Q Consensus 138 ~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w-~~~~ 216 (383)
+|++|..+..++.+.+.+|+.++||.||+|+|++.+.... ++ ........++.+.+...|.+.++++-- ...+
T Consensus 234 ~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll----~~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~ 307 (444)
T COG1232 234 EVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLL----GD--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPD 307 (444)
T ss_pred eeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHc----CC--cchhhhhhhccccceEEEEEEeccccccCCCC
Confidence 9999999987788888889899999999999999987543 32 223567888888777778888887521 2235
Q ss_pred cceeecCCCCc----eeEeeec---cCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEccC
Q 016772 217 FLGVVSDTSYG----CSYFLNL---HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHW 289 (383)
Q Consensus 217 ~~g~~~~~~~~----~~~~~~~---~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~W 289 (383)
.+|++.++... +.+..+. ..|.|+.++.+.+.++..+....++|||+++.+++.|.++++...+|..+.+++|
T Consensus 308 ~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~ 387 (444)
T COG1232 308 GYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPVFVEVTRW 387 (444)
T ss_pred ceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcchhheeeeec
Confidence 56666543322 2222222 2345676777887776666677788999999999999999987677888888899
Q ss_pred CCCCCCCCcCCCCCCCCChH---HHHHHhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHH
Q 016772 290 GTDANSLGSYSYDTVGKSHD---LYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 290 ~~~~~~~g~y~~~~~g~~~~---~~~~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~ 351 (383)
+++++.| .+|+... .+..+..-+++|+.+|.+... -++++++.+|..||++++
T Consensus 388 ---~~~~PqY---~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 388 ---KYAMPQY---EVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred ---cccCCcc---chhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 5566666 5665322 123333333689999998865 279999999999999875
No 18
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.93 E-value=1.3e-24 Score=212.13 Aligned_cols=279 Identities=19% Similarity=0.231 Sum_probs=186.1
Q ss_pred CCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhccccc--ccc---CCC-ceeccCC-hHHH
Q 016772 52 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKE--ELL---PGG-HGLMVRG-YLPV 123 (383)
Q Consensus 52 ~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~~--~~~---~g~-~~~~~gG-~~~l 123 (383)
+++|+.+|+++. ++++.+.+.++.+ ..++++.+++++|+.++... ..+ .+. .....|| ++.+
T Consensus 146 ~~~s~~~~l~~~----------~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l 215 (453)
T TIGR02731 146 DKYTVTEWLRKQ----------GVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERL 215 (453)
T ss_pred ccCCHHHHHHHc----------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHH
Confidence 578999998752 2344455545555 56778899999999875411 101 111 1223333 3445
Q ss_pred HHHHHc-----cCCcccCceeEEEEecCCe-e-EEEECCCc-----EEEcCEEEEecChHHHhcCCcccCCCCc-HHHHH
Q 016772 124 INTLAK-----GLDIRLGHRVTKITRHYIG-V-KVTVEGGK-----TFVADAVVVAVPLGVLKARTIKFEPRLP-DWKEA 190 (383)
Q Consensus 124 ~~~L~~-----~l~I~l~~~V~~I~~~~~~-v-~V~~~~G~-----~~~ad~VI~t~p~~~l~~~~i~f~p~Lp-~~~~~ 190 (383)
+++|.+ +.+|++|++|++|...+++ + .|++.+|+ ++.||+||+|+|++.+..++ .+.++ ....+
T Consensus 216 ~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL---~~~~~~~~~~~ 292 (453)
T TIGR02731 216 CQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLL---PQPWKQMPFFQ 292 (453)
T ss_pred HHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhC---chhhhcCHHHH
Confidence 555544 4579999999999875544 4 36665554 78999999999999876431 22222 23445
Q ss_pred HHhhcCCcccceEEEEcCCCCCCCCCcceeecCCCCceeEee-e----ccCCCCCceEEEEecchhhHHHhcCCHHHHHH
Q 016772 191 AIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFL-N----LHKATGHCVLVYMPAGQLARDIEKMSDEAAAN 265 (383)
Q Consensus 191 ai~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~-~----~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~ 265 (383)
.++++.++++.|+++.|++++|... .+.+ ...+......+ + ...+++. .++.++.+. +..+..++++++++
T Consensus 293 ~~~~~~~~~~~~v~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~s~~~~~~~~~~~-~l~~~~~~~-~~~~~~~~~ee~~~ 368 (453)
T TIGR02731 293 KLNGLEGVPVINVHIWFDRKLTTVD-HLLF-SRSPLLSVYADMSETCKEYADPDK-SMLELVFAP-AADWIGRSDEEIID 368 (453)
T ss_pred HhhcCCCCcEEEEEEEEccccCCCC-ceee-eCCCcceeecchhhhChhhcCCCC-eEEEEEecC-hhhhhcCCHHHHHH
Confidence 6677788899999999999987532 1111 11111111110 0 0112333 444333332 35678899999999
Q ss_pred HHHHHHHHhCCCC---CCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCCCCCchhhHHHHH
Q 016772 266 FAFTQLKKILPDA---SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFST 342 (383)
Q Consensus 266 ~v~~~L~~~~~~~---~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~~~~g~v~gA~~S 342 (383)
.++++|+++||.. ..+.++..++|.++||+. | ...+| .....+.+++|++||||||++++..|+|+||||++|
T Consensus 369 ~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~-~~~pg-~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~S 444 (453)
T TIGR02731 369 ATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--Y-KTTPG-RQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLS 444 (453)
T ss_pred HHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--e-ccCCC-ChhhCccccCccCCEEEeehhccCcccccHHHHHHH
Confidence 9999999999852 246777788999999984 4 23456 345667788999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 016772 343 GLMAAEDCR 351 (383)
Q Consensus 343 G~~aA~~i~ 351 (383)
|++||++|+
T Consensus 445 G~~AA~~v~ 453 (453)
T TIGR02731 445 GKLCAQAIV 453 (453)
T ss_pred HHHHHHHhC
Confidence 999999873
No 19
>PLN02612 phytoene desaturase
Probab=99.93 E-value=2.7e-24 Score=213.69 Aligned_cols=284 Identities=18% Similarity=0.175 Sum_probs=180.7
Q ss_pred CCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHhhhhhcCCCCCccChhcccc--ccccC---C-CceeccCCh-HHHH
Q 016772 52 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDK--EELLP---G-GHGLMVRGY-LPVI 124 (383)
Q Consensus 52 ~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~--~~~~~---g-~~~~~~gG~-~~l~ 124 (383)
+++|+.+|+++.. ..+++.+++++.+ +.+.++.+++++|+.++.. ...+. + ...++.|+. ..|+
T Consensus 241 d~~Sv~e~l~~~~------~~~~~~~~~~~~l---~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~ 311 (567)
T PLN02612 241 DGLSVKEWMRKQG------VPDRVNDEVFIAM---SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC 311 (567)
T ss_pred CcCcHHHHHHhcC------CCHHHHHHHHHHH---HHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHH
Confidence 4689999987621 0012333444433 4566788999999987552 11111 1 123344554 4555
Q ss_pred HHHHc-----cCCcccCceeEEEEecCCe--eEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCC
Q 016772 125 NTLAK-----GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGV 197 (383)
Q Consensus 125 ~~L~~-----~l~I~l~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~ 197 (383)
+.|++ +.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..++.+.-... .+....+.++++.+
T Consensus 312 ~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~--~~~~~~~~l~~l~~ 389 (567)
T PLN02612 312 MPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW--KEIPYFKKLDKLVG 389 (567)
T ss_pred HHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh--cCcHHHHHHHhcCC
Confidence 66554 4579999999999986655 337777898899999999999999875321111 11233455667888
Q ss_pred cccceEEEEcCCCCCCCCCcceeecCCC-CceeEee-e----ccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHH
Q 016772 198 GIENKIIMHFDKVFWPNVEFLGVVSDTS-YGCSYFL-N----LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQL 271 (383)
Q Consensus 198 ~~~~kv~l~~~~~~w~~~~~~g~~~~~~-~~~~~~~-~----~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L 271 (383)
.++.++++.|++++|..... .+.... ......+ + .+.+++..++.+. .+ .+.+|.+++++++++.++++|
T Consensus 390 ~~v~~v~l~~dr~~~~~~~~--~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~-~~-~a~~~~~~sdeei~e~vl~~L 465 (567)
T PLN02612 390 VPVINVHIWFDRKLKNTYDH--LLFSRSPLLSVYADMSTTCKEYYDPNKSMLELV-FA-PAEEWISRSDEDIIDATMKEL 465 (567)
T ss_pred CCeEEEEEEECcccCCCCCc--eeecCCCCceeehhhhhcchhhcCCCCeEEEEE-EE-cChhhhcCCHHHHHHHHHHHH
Confidence 88999999999999853221 222111 1111111 0 0112334444433 33 467888999999999999999
Q ss_pred HHhCCCCCCC----cEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCCCCCchhhHHHHHHHHHH
Q 016772 272 KKILPDASSP----IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 347 (383)
Q Consensus 272 ~~~~~~~~~~----~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA 347 (383)
+++||....+ ..+....+...|++. |.. .++. ...++.+++|++|||||||+|...|.++|+||+.||++||
T Consensus 466 ~~lfp~~~~~~~~~~~i~~~~~v~~P~a~--~~~-~pg~-~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA 541 (567)
T PLN02612 466 AKLFPDEISADQSKAKILKYHVVKTPRSV--YKT-VPNC-EPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCA 541 (567)
T ss_pred HHHCCcccccccCCceEEEEEEeccCCce--EEe-CCCC-cccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHH
Confidence 9999863221 222333344445432 221 2222 1234556789999999999999988999999999999999
Q ss_pred HHHHHHH
Q 016772 348 EDCRMRV 354 (383)
Q Consensus 348 ~~i~~~l 354 (383)
++|++.+
T Consensus 542 ~~I~~~~ 548 (567)
T PLN02612 542 QSIVQDY 548 (567)
T ss_pred HHHHHHh
Confidence 9998775
No 20
>PRK07233 hypothetical protein; Provisional
Probab=99.92 E-value=3.3e-24 Score=208.35 Aligned_cols=278 Identities=19% Similarity=0.199 Sum_probs=189.3
Q ss_pred CCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhccccc---cc------cCCCceeccCChH
Q 016772 52 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKE---EL------LPGGHGLMVRGYL 121 (383)
Q Consensus 52 ~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~~---~~------~~g~~~~~~gG~~ 121 (383)
.++|+.+|+.+. .+.++++.++.+ +...++.+++++|+.++... .. ......+++||++
T Consensus 130 ~~~s~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~ 198 (434)
T PRK07233 130 DKVPAEEWLRRW-----------SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFA 198 (434)
T ss_pred ccccHHHHHHHh-----------cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHH
Confidence 468999998763 234455556665 67889999999999764311 00 0123567999999
Q ss_pred HHHHHHHccC-----CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcC
Q 016772 122 PVINTLAKGL-----DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLG 196 (383)
Q Consensus 122 ~l~~~L~~~l-----~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~ 196 (383)
.|+++|++.+ +|++|++|++|+.+++++.+.+.+|+.++||+||+|+|+..+..+ .|++++...+.++.+.
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~l----l~~~~~~~~~~~~~~~ 274 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARL----VPDLPADVLARLRRID 274 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhh----cCCCcHHHHhhhcccC
Confidence 9999998744 699999999999888887655567778999999999999988743 2667777778888999
Q ss_pred CcccceEEEEcCCCCCCCCCcceeecCC-CCce-eEee-ecc---CCCCCceE--EEEecchhhHHHhcCCHHHHHHHHH
Q 016772 197 VGIENKIIMHFDKVFWPNVEFLGVVSDT-SYGC-SYFL-NLH---KATGHCVL--VYMPAGQLARDIEKMSDEAAANFAF 268 (383)
Q Consensus 197 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~-~~~~-~~~~-~~~---~~~g~~~l--~~~~~g~~a~~~~~~~~ee~~~~v~ 268 (383)
+.+..++++.++++.++ .+.-..... .... .... +.. .+++..++ .+++.+.. .+..++++++++.++
T Consensus 275 ~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 350 (434)
T PRK07233 275 YQGVVCMVLKLRRPLTD--YYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFL 350 (434)
T ss_pred ccceEEEEEEecCCCCC--CceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHH
Confidence 98888899999987532 111111111 1111 1111 111 12344443 23444332 255778999999999
Q ss_pred HHHHHhCCCC--CCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCCCCCchhhHHHHHHHHH
Q 016772 269 TQLKKILPDA--SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 346 (383)
Q Consensus 269 ~~L~~~~~~~--~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~a 346 (383)
++|++++|.. ..+....+.+| +++.+.| .+|. ...++.+.+|++||||||+.+...+.++|++|+.||++|
T Consensus 351 ~~L~~~~p~~~~~~~~~~~~~r~---~~a~~~~---~~g~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~a 423 (434)
T PRK07233 351 SYLRKMFPDFDRDDVRAVRISRA---PYAQPIY---EPGY-LDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRV 423 (434)
T ss_pred HHHHHhCCCCChhheeeEEEEEe---ccccccc---cCch-hhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHH
Confidence 9999999853 22344444444 6665554 3442 233455677889999999965444556999999999999
Q ss_pred HHHHHHHHH
Q 016772 347 AEDCRMRVL 355 (383)
Q Consensus 347 A~~i~~~l~ 355 (383)
|++|++.++
T Consensus 424 A~~i~~~~~ 432 (434)
T PRK07233 424 AREILEDRR 432 (434)
T ss_pred HHHHhhhhc
Confidence 999988764
No 21
>PRK07208 hypothetical protein; Provisional
Probab=99.89 E-value=4.3e-21 Score=188.70 Aligned_cols=280 Identities=18% Similarity=0.115 Sum_probs=187.6
Q ss_pred CCCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhcccccc--------------c-------
Q 016772 51 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKEE--------------L------- 108 (383)
Q Consensus 51 ~~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~~~--------------~------- 108 (383)
.+++|+.+|+.+ ++++.+.+.++.+ ..++|+.+++++|+.++.... .
T Consensus 130 ~~~~s~~e~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (479)
T PRK07208 130 KEEDSFEDWVIN-----------RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRR 198 (479)
T ss_pred CCCCCHHHHHHH-----------hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhccccccc
Confidence 357999999986 4577788888876 678999999999997533100 0
Q ss_pred ----c---CCCceeccCChHHHHHHHHccC-----CcccCceeEEEEecCCee-E-EEE--CCCc--EEEcCEEEEecCh
Q 016772 109 ----L---PGGHGLMVRGYLPVINTLAKGL-----DIRLGHRVTKITRHYIGV-K-VTV--EGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 109 ----~---~g~~~~~~gG~~~l~~~L~~~l-----~I~l~~~V~~I~~~~~~v-~-V~~--~~G~--~~~ad~VI~t~p~ 170 (383)
. .....+++||+++|+++|++.+ +|++|++|++|..+++++ . ++. .+|+ .+.||+||+|+|+
T Consensus 199 ~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 199 NKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred CCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 0 0123467899999999998744 699999999999987763 2 332 2453 5899999999999
Q ss_pred HHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCCCCCCcceeecCCCCc---eeEee---eccCCCCCc-eE
Q 016772 171 GVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG---CSYFL---NLHKATGHC-VL 243 (383)
Q Consensus 171 ~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~---~~~~~---~~~~~~g~~-~l 243 (383)
..+... +.|++|+...++++++.+.++.++++.|+++.+.... ..++.+.... ...+. +...|++.. .+
T Consensus 279 ~~l~~~---l~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l 354 (479)
T PRK07208 279 RELVAA---LDPPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDN-WIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWL 354 (479)
T ss_pred HHHHHh---cCCCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCc-eEEecCCCCccceecccccCCcccCCCCCceEE
Confidence 988753 2366788888889999999999999999987543222 1222221110 11111 111244442 22
Q ss_pred EE-EecchhhHHHhcCCHHHHHHHHHHHHHHhCCC-CCCCcEEEEccCCCCCCCCCcCCCCCCCCChHH--HHHHhCCCC
Q 016772 244 VY-MPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL--YERLRIPVD 319 (383)
Q Consensus 244 ~~-~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~-~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~--~~~~~~p~~ 319 (383)
.+ +... ....+++++++++++.++++|.++... ...+....+.+| +++.+.| .+++.... ...+.++.+
T Consensus 355 ~~~~~~~-~~~~~~~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~---~~a~P~y---~~~~~~~~~~~~~~~~~~~ 427 (479)
T PRK07208 355 GLEYFCF-EGDDLWNMSDEDLIALAIQELARLGLIRPADVEDGFVVRV---PKAYPVY---DGTYERNVEIIRDLLDHFP 427 (479)
T ss_pred EEEEEcc-CCCccccCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEe---cCcccCC---CchHHHHHHHHHHHHHhcC
Confidence 21 2211 123455789999999999999997322 234566667777 4455544 34442211 122346678
Q ss_pred CEEEeccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 016772 320 NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 320 ~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 353 (383)
||++||++....+ .++++|+.||.++|++|++.
T Consensus 428 ~l~laGr~~~~~~-~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 428 NLHLVGRNGMHRY-NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred Cceeecccccccc-CChhHHHHHHHHHHHHHhcC
Confidence 9999998876654 49999999999999988765
No 22
>PLN02487 zeta-carotene desaturase
Probab=99.87 E-value=8.4e-21 Score=186.81 Aligned_cols=282 Identities=16% Similarity=0.051 Sum_probs=188.2
Q ss_pred CCCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhccccc-cc----c-CCCceeccCChHH-
Q 016772 51 DEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDKE-EL----L-PGGHGLMVRGYLP- 122 (383)
Q Consensus 51 ~~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~~-~~----~-~g~~~~~~gG~~~- 122 (383)
.+++|+.+|++++. ..+++++.|+.+ +.+.++.+++++|+.++..- .. . .+...+++||+..
T Consensus 227 ~d~~sv~~~l~r~~----------g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~ 296 (569)
T PLN02487 227 LDDISFSDWFTSHG----------GTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVR 296 (569)
T ss_pred ccCCcHHHHHHHhC----------CCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHH
Confidence 34689999998743 223477888887 67889999999999875421 11 1 1235678999995
Q ss_pred HHHHHHcc-----CCcccCceeEEEEecC--Ce---e-EEEE---CCCcEEEcCEEEEecChHHHhcCCcccCCCCcHH-
Q 016772 123 VINTLAKG-----LDIRLGHRVTKITRHY--IG---V-KVTV---EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW- 187 (383)
Q Consensus 123 l~~~L~~~-----l~I~l~~~V~~I~~~~--~~---v-~V~~---~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~- 187 (383)
|++.+++. .+|+++++|++|..++ ++ + .|++ .+++.+.||+||+|+|+..++++. |+....
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Ll----p~~~~~~ 372 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLL----PEQWREY 372 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhC----Cchhhcc
Confidence 88888764 4799999999999863 22 3 3555 344578999999999999987542 443221
Q ss_pred -HHHHHhhcCCcccceEEEEcCCCCCCCC---------Ccceee----cCCCCceeEee---e----ccCCCCCceEEEE
Q 016772 188 -KEAAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGVV----SDTSYGCSYFL---N----LHKATGHCVLVYM 246 (383)
Q Consensus 188 -~~~ai~~~~~~~~~kv~l~~~~~~w~~~---------~~~g~~----~~~~~~~~~~~---~----~~~~~g~~~l~~~ 246 (383)
....+..+...++..++|.|+++.-... ...|.- .......+..+ + ++.......|.++
T Consensus 373 ~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~v 452 (569)
T PLN02487 373 EFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAV 452 (569)
T ss_pred HHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEE
Confidence 2467777878888889999997543110 111110 01111111111 0 1111123456555
Q ss_pred ecchhhHHHhcCCHHHHHHHHHHHHHHhCCCCC--CCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEe
Q 016772 247 PAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFA 324 (383)
Q Consensus 247 ~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~~~--~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~fa 324 (383)
+.. +..+..++++++++.++++|.++||... .+....+.+..+.-|. ..||. ...++..++|++|||+|
T Consensus 453 is~--a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~------~~pg~-~~~RP~~~T~~~nl~LA 523 (569)
T PLN02487 453 LTP--GDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYR------EAPGM-DPFRPDQKTPISNFFLA 523 (569)
T ss_pred EcC--CccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceec------cCCCc-cccCCCCCCCCCCEEEe
Confidence 554 3567789999999999999999998632 2444444444433222 23433 22346678899999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 325 GEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 325 G~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
||+|...|+.+||||+.||++||+.|++...
T Consensus 524 GD~t~~~yPat~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 524 GSYTKQDYIDSMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred CcccccCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887653
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.86 E-value=1.9e-20 Score=182.76 Aligned_cols=277 Identities=17% Similarity=0.106 Sum_probs=177.1
Q ss_pred CCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhcccc------ccccCCCceeccCChHH--
Q 016772 52 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK------EELLPGGHGLMVRGYLP-- 122 (383)
Q Consensus 52 ~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~------~~~~~g~~~~~~gG~~~-- 122 (383)
+++|+.+|++++. ..+.+++.|+.+ +.+.++.+++++|+..+.. .........+++||++.
T Consensus 152 ~~~t~~~~l~~~~----------~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l 221 (474)
T TIGR02732 152 DKISFAEWFLSHG----------GSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYL 221 (474)
T ss_pred ccccHHHHHHHcC----------CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhH
Confidence 4689999998742 233477888887 7788999999999986531 11111134456666544
Q ss_pred ---HHHHHHc-cCCcccCceeEEEEecC--Ce---eE-EEECCC---cEEEcCEEEEecChHHHhcCCcccCCCCc--HH
Q 016772 123 ---VINTLAK-GLDIRLGHRVTKITRHY--IG---VK-VTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLP--DW 187 (383)
Q Consensus 123 ---l~~~L~~-~l~I~l~~~V~~I~~~~--~~---v~-V~~~~G---~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp--~~ 187 (383)
+++.|.+ +.+|+++++|++|..++ ++ ++ |++.+| +++.||+||+|+|++.++.+. |+++ ..
T Consensus 222 ~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll----~~~~~~~~ 297 (474)
T TIGR02732 222 TKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLL----PQEWRQFE 297 (474)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhC----ChhhhcCH
Confidence 6666655 55799999999998854 22 32 345433 568999999999999987642 3322 12
Q ss_pred HHHHHhhcCCcccceEEEEcCCCCCCCC---------Cccee---e-cCCCCceeEee----ec--cCCCCCc-eEEEEe
Q 016772 188 KEAAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGV---V-SDTSYGCSYFL----NL--HKATGHC-VLVYMP 247 (383)
Q Consensus 188 ~~~ai~~~~~~~~~kv~l~~~~~~w~~~---------~~~g~---~-~~~~~~~~~~~----~~--~~~~g~~-~l~~~~ 247 (383)
....+..+.+.++..|+|.|+++.-... +..+. + .......+..+ .. ..+.+.. ++.+++
T Consensus 298 ~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (474)
T TIGR02732 298 EFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVL 377 (474)
T ss_pred HHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEE
Confidence 4567888899999999999987432110 00000 0 00000011111 00 1112232 344444
Q ss_pred cchhhHHHhcCCHHHHHHHHHHHHHHhCCCCC--CCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEec
Q 016772 248 AGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAG 325 (383)
Q Consensus 248 ~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~~~--~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG 325 (383)
.. +..+.+++++++++.++++|+++||... .+....+.+..+.-+. ..||.. ..++..++|++|||+||
T Consensus 378 ~~--~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~------~~pg~~-~~~P~~~t~~~~l~lAG 448 (474)
T TIGR02732 378 TP--GDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYR------EAPGMD-PFRPDQKTPISNFFLAG 448 (474)
T ss_pred eC--hhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceec------cCCCCc-ccCCCCCCCCCCeEEec
Confidence 43 3467779999999999999999998632 3344434444332222 234432 23455678889999999
Q ss_pred cccCCCCCchhhHHHHHHHHHHHHHH
Q 016772 326 EATSMSYPGSVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 326 ~~~~~~~~g~v~gA~~SG~~aA~~i~ 351 (383)
|++...|+.+||||+.||++||+.|+
T Consensus 449 D~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 449 SYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cccccCchHHHhHHHHHHHHHHHHhC
Confidence 99999999999999999999999763
No 24
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.82 E-value=1.4e-18 Score=158.17 Aligned_cols=322 Identities=18% Similarity=0.152 Sum_probs=222.3
Q ss_pred cccccCCceeEEcCCCCccCHHHHHHHHHH----HHHHHHH-HH-HHHh---hCCCCCcHHHHHHHHHccCchhhhhhHH
Q 016772 6 EDIYSFCSYALFDMDGNQVPQELVTKVGEA----FESILKE-TD-KVRE---EHDEDMSIQRAISIVFDRRPELRLEGLA 76 (383)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~-~~-~~~~---~~~~d~s~~~~l~~~~~~~~~~~~~~~~ 76 (383)
+++++.++++|+......+|..+...+... ...+... .. .+++ .+..|+|+.+|.+| +|+
T Consensus 99 ~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~R-----------rfG 167 (491)
T KOG1276|consen 99 SHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFARR-----------RFG 167 (491)
T ss_pred CChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHHH-----------hhh
Confidence 567888999999999999999887633221 1122211 11 1222 24569999999987 578
Q ss_pred HHHHHHHHHh-hhhhcCCCCCccChhcccc-----cccc-------------------------------CCCceeccCC
Q 016772 77 HKVLQWYLCR-MEGWFAADAETISLKSWDK-----EELL-------------------------------PGGHGLMVRG 119 (383)
Q Consensus 77 ~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~-----~~~~-------------------------------~g~~~~~~gG 119 (383)
+++.++++++ +.|+|++|++++|++.... +..+ .-..+.++||
T Consensus 168 ~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gG 247 (491)
T KOG1276|consen 168 KEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGG 247 (491)
T ss_pred HHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhh
Confidence 9999999987 8999999999999986321 1000 0114568899
Q ss_pred hHHHHHHHHccC-----CcccCceeEEEEecC-CeeEEEE--CCCc-EEEcCEEEEecChHHHhcCCcccCCCCcHHHHH
Q 016772 120 YLPVINTLAKGL-----DIRLGHRVTKITRHY-IGVKVTV--EGGK-TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEA 190 (383)
Q Consensus 120 ~~~l~~~L~~~l-----~I~l~~~V~~I~~~~-~~v~V~~--~~G~-~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ 190 (383)
++.++++|.+.+ .|.++.++..+.... ++|.+++ .++. ....+++..|+|..++..+. |.+.+....
T Consensus 248 le~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll----~~~~~sls~ 323 (491)
T KOG1276|consen 248 LETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLL----RGLQNSLSN 323 (491)
T ss_pred HhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhc----cccchhhhh
Confidence 999999999876 478888998887644 4466554 4453 35667777799999987643 555555678
Q ss_pred HHhhcCCcccceEEEEcCCCC-CCCCCcceeecCCCC-----c-eeEeeeccC--CCCCceEEEEecchhhHH--HhcCC
Q 016772 191 AIDDLGVGIENKIIMHFDKVF-WPNVEFLGVVSDTSY-----G-CSYFLNLHK--ATGHCVLVYMPAGQLARD--IEKMS 259 (383)
Q Consensus 191 ai~~~~~~~~~kv~l~~~~~~-w~~~~~~g~~~~~~~-----~-~~~~~~~~~--~~g~~~l~~~~~g~~a~~--~~~~~ 259 (383)
++..+.|.++..|.+.|+++- -.+..+||.+.|... . ...|++..- .++.+.++++++|.+... ....+
T Consensus 324 ~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~~~S 403 (491)
T KOG1276|consen 324 ALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLAVPS 403 (491)
T ss_pred hhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccCcCCCCC
Confidence 899999999999999998863 345678999987321 1 234444322 233346777776655443 23458
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEEccCCCCCCCCCcCCCCCCCCChHH---HHHHhC-CCCCEEEeccccCCCCCch
Q 016772 260 DEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL---YERLRI-PVDNLFFAGEATSMSYPGS 335 (383)
Q Consensus 260 ~ee~~~~v~~~L~~~~~~~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~---~~~~~~-p~~~l~faG~~~~~~~~g~ 335 (383)
.|++++.+.+.|.++++....|....++-|.+ +.+. +.+|+.... ..-+.+ +-.+|+++|.+..+ -.
T Consensus 404 ~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~---ciPq---y~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~G---v~ 474 (491)
T KOG1276|consen 404 PEELVNAVTSALQKMLGISNKPVSVNVHLWKN---CIPQ---YTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGG---VS 474 (491)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccccceehhh---cccc---eecchHHHHHHHHHHHHhCCCCceEeeccccCC---CC
Confidence 89999999999999998755677666666632 3333 366664321 122222 33589999999987 38
Q ss_pred hhHHHHHHHHHHHHHH
Q 016772 336 VHGAFSTGLMAAEDCR 351 (383)
Q Consensus 336 v~gA~~SG~~aA~~i~ 351 (383)
+..+|+||+++|.+++
T Consensus 475 vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 475 VGDCIESGRKTAVEVI 490 (491)
T ss_pred hhHHHHhhHHHHHhhc
Confidence 9999999999998764
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.80 E-value=4.4e-18 Score=167.78 Aligned_cols=257 Identities=15% Similarity=0.072 Sum_probs=158.5
Q ss_pred cCCCCCccChhccc---cccccCCCceeccCChHHHHHHHHccC-----CcccCceeEEEEecCCeeE-EEECCC-----
Q 016772 91 FAADAETISLKSWD---KEELLPGGHGLMVRGYLPVINTLAKGL-----DIRLGHRVTKITRHYIGVK-VTVEGG----- 156 (383)
Q Consensus 91 ~~~~~~~~S~~~~~---~~~~~~g~~~~~~gG~~~l~~~L~~~l-----~I~l~~~V~~I~~~~~~v~-V~~~~G----- 156 (383)
.+.++++.++.+.. ......++.++++||+++|+++|++.+ +|++|++|++|..+++++. |.+.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~ 278 (492)
T TIGR02733 199 SQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQED 278 (492)
T ss_pred ccCChhhhhHHHHHHHhhccccCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCce
Confidence 45667788876532 222223456789999999999998854 5999999999998877532 433333
Q ss_pred cEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCCcc-cceEEEEcCCCC--CCCCCcceeecCCCCceeE---
Q 016772 157 KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI-ENKIIMHFDKVF--WPNVEFLGVVSDTSYGCSY--- 230 (383)
Q Consensus 157 ~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~-~~kv~l~~~~~~--w~~~~~~g~~~~~~~~~~~--- 230 (383)
+++.||+||+|+|+..+..+ + ..|.+|+...+.++++.+++ ..++++.+++.. +.....+..+.........
T Consensus 279 ~~~~ad~VI~~~~~~~~~~l-l-~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 356 (492)
T TIGR02733 279 LNVKADDVVANLPPQSLLEL-L-GPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSLFVSIS 356 (492)
T ss_pred EEEECCEEEECCCHHHHHHh-c-CcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceEEEEeC
Confidence 57899999999999988752 2 33567777777788888766 447889998732 1111112211111110000
Q ss_pred -eeeccCCCCCceEEEEecchh-------hHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEc----cCCCCCCC-CC
Q 016772 231 -FLNLHKATGHCVLVYMPAGQL-------ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVS----HWGTDANS-LG 297 (383)
Q Consensus 231 -~~~~~~~~g~~~l~~~~~g~~-------a~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~----~W~~~~~~-~g 297 (383)
.++...|+|+.++++.+..+. ..+|... ++++.+.+++.|++.+|++.+.+..... +|.+.... .|
T Consensus 357 ~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~-k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G 435 (492)
T TIGR02733 357 QEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAK-KKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQG 435 (492)
T ss_pred CccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCc
Confidence 011234566767655443321 1223332 4668899999999999875544433221 34332111 23
Q ss_pred cC-CCCC-CCCChHHHHHHhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 298 SY-SYDT-VGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 298 ~y-~~~~-~g~~~~~~~~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+. .... +.+........++|++||||||+++++ ++++.||+.||+.+|+.|++
T Consensus 436 ~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~p--G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 436 IVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHP--GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred EECCCCcCccccCCcCCCCCCCCCCeEEecCccCC--CCcHHHHHHHHHHHHHHHhh
Confidence 22 1111 111111112225789999999999998 46899999999999999875
No 26
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.79 E-value=4.1e-19 Score=152.52 Aligned_cols=223 Identities=18% Similarity=0.148 Sum_probs=162.5
Q ss_pred eeccCChHHHHHHHHccCCcccCceeEEEEecCCeeEEEECCC-cEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHH
Q 016772 114 GLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 192 (383)
Q Consensus 114 ~~~~gG~~~l~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai 192 (383)
+.-.-||++|++.|+..++|+++++|++|.+.++.|++++++| +...+|.||+|+|.+++..++....-.+|++.+.++
T Consensus 101 yvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~ 180 (331)
T COG3380 101 YVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAAL 180 (331)
T ss_pred cccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhh
Confidence 4456799999999999999999999999999999999999766 568999999999999987654333456888899999
Q ss_pred hhcCCcccceEEEEcCCCCCCCCCcceeecCC-CCceeEeeec---cCCCCCceEEEEecchhhHHHhcCCHHHHHHHHH
Q 016772 193 DDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT-SYGCSYFLNL---HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAF 268 (383)
Q Consensus 193 ~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~-~~~~~~~~~~---~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~ 268 (383)
..+.|.+...+.+.|+.+.-. +..|...+. +......++. +.+.+. ++++-...+++....+.++|+.+..+.
T Consensus 181 a~V~y~Pc~s~~lg~~q~l~~--P~~G~~vdg~~laWla~d~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~ 257 (331)
T COG3380 181 ADVVYAPCWSAVLGYPQPLDR--PWPGNFVDGHPLAWLARDASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALR 257 (331)
T ss_pred ccceehhHHHHHhcCCccCCC--CCCCcccCCCeeeeeeccccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHH
Confidence 999999999899999876432 222222221 1111111212 123333 677777777888888888888876666
Q ss_pred HHHHHhCCC-CCCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHH-hCCCCCEEEeccccCCCCCchhhHHHHHHHHH
Q 016772 269 TQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL-RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMA 346 (383)
Q Consensus 269 ~~L~~~~~~-~~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~-~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~a 346 (383)
.....+.++ .++|.....++| +|+.+.-.... +.+ ..+-.+||+|||++++ |-+|||.+||..+
T Consensus 258 aA~~~~~~~~~~~p~~s~~H~W---rYA~P~~~~~~--------~~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAa 323 (331)
T COG3380 258 AAAQELDGDRLPEPDWSDAHRW---RYAIPNDAVAG--------PPLDADRELPLYACGDWCAG---GRVEGAVLSGLAA 323 (331)
T ss_pred HhhhhccCCCCCcchHHHhhcc---ccccccccccC--------CccccCCCCceeeecccccC---cchhHHHhccHHH
Confidence 666666664 678888888999 66644322111 111 1333579999999987 6999999999999
Q ss_pred HHHHHHH
Q 016772 347 AEDCRMR 353 (383)
Q Consensus 347 A~~i~~~ 353 (383)
|++|++.
T Consensus 324 A~~i~~~ 330 (331)
T COG3380 324 ADHILNG 330 (331)
T ss_pred HHHHHhc
Confidence 9999875
No 27
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.72 E-value=1.3e-16 Score=157.71 Aligned_cols=260 Identities=15% Similarity=0.060 Sum_probs=156.5
Q ss_pred hhhcCCCCCccChhccc-cccccCCCceeccCChHHHHHHHHc-----cCCcccCceeEEEEecCCe-eEEEECCCcEEE
Q 016772 88 EGWFAADAETISLKSWD-KEELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFV 160 (383)
Q Consensus 88 ~~~~~~~~~~~S~~~~~-~~~~~~g~~~~~~gG~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~V~~~~G~~~~ 160 (383)
..+++.++++.++.+.. ......++.+++.||++.++++|++ +.+|+++++|++|..++++ +.|++.+|+++.
T Consensus 185 ~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 185 ALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLD 264 (502)
T ss_pred ceeeccCcccchHHHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEE
Confidence 34567888887765433 2223345677899999999999987 4479999999999988776 468888888899
Q ss_pred cCEEEEecChHHHhcCCcccCCCC-cHHHHHHHhhcCCc-ccceEEEEcC---CCCCCCCC-cceee-------------
Q 016772 161 ADAVVVAVPLGVLKARTIKFEPRL-PDWKEAAIDDLGVG-IENKIIMHFD---KVFWPNVE-FLGVV------------- 221 (383)
Q Consensus 161 ad~VI~t~p~~~l~~~~i~f~p~L-p~~~~~ai~~~~~~-~~~kv~l~~~---~~~w~~~~-~~g~~------------- 221 (383)
||+||+|+++..+...++ .+.. ++...+.++++.++ +..++++.++ +++ +... ...++
T Consensus 265 ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 341 (502)
T TIGR02734 265 ADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHW-PQLAHHTLCFGPRYKELFDEIFR 341 (502)
T ss_pred CCEEEECCcHHHHHHHhc--CccccccccccccccCCcCCeeeEEEEeeccccCcC-CCcCceeEecCcCHHHHHHHHhc
Confidence 999999999977654322 2333 22333455666643 4566788887 332 2111 11111
Q ss_pred ----cCCCCceeEe----eeccCCCCCceEEEEecchhh----HHHhcCCHHHHHHHHHHHHHHh-CCCCCCCcEEEEc-
Q 016772 222 ----SDTSYGCSYF----LNLHKATGHCVLVYMPAGQLA----RDIEKMSDEAAANFAFTQLKKI-LPDASSPIQYLVS- 287 (383)
Q Consensus 222 ----~~~~~~~~~~----~~~~~~~g~~~l~~~~~g~~a----~~~~~~~~ee~~~~v~~~L~~~-~~~~~~~~~~~~~- 287 (383)
...+...... ++...|+|+.++.+++..+.. ..|.. ..+++.+.+++.|++. +|+..+.+.....
T Consensus 342 ~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~ 420 (502)
T TIGR02734 342 KGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSV-EGPRYRDRILAYLEERAIPGLRDRIVVERTF 420 (502)
T ss_pred CCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCCChhHheEEEEEc
Confidence 0011111111 112345676666555433211 12322 2567899999999998 8875443333221
Q ss_pred ---cCCCCCCC-CCcCCCCC--CCCChHHHHH-HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 016772 288 ---HWGTDANS-LGSYSYDT--VGKSHDLYER-LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 288 ---~W~~~~~~-~g~y~~~~--~g~~~~~~~~-~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 353 (383)
+|.+.... .|+..... ..+....++. ..+|++|||+||+++++ ++++.||+.||+.+|+.|++.
T Consensus 421 TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~p--G~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 421 TPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHP--GAGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred CHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCC--CCCHHHHHHHHHHHHHHHHhh
Confidence 33321111 23221111 1111111221 24678999999999998 468999999999999999875
No 28
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.71 E-value=1.5e-15 Score=149.75 Aligned_cols=240 Identities=19% Similarity=0.182 Sum_probs=144.8
Q ss_pred CCCceeccCChHHHHHHHHcc-----CCcccCceeEEEEecCCee-EEEECCCcEEEcCEEEEecChHHHhcCCcccCCC
Q 016772 110 PGGHGLMVRGYLPVINTLAKG-----LDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 183 (383)
Q Consensus 110 ~g~~~~~~gG~~~l~~~L~~~-----l~I~l~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~ 183 (383)
.++.+++.||++.|+++|++. .+|+++++|++|..+++++ .|++.+|++++||+||+|+.+..+...++. ...
T Consensus 218 ~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~ 296 (493)
T TIGR02730 218 YGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AEN 296 (493)
T ss_pred cceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccc
Confidence 356678999999999999874 4699999999999887665 478888988999999999977654322221 122
Q ss_pred CcHHHHHHHhhcCCc-ccceEEEEcCCCCCCCC-CcceeecC------CCCc-ee-E----eeeccCCCCCceEEEEecc
Q 016772 184 LPDWKEAAIDDLGVG-IENKIIMHFDKVFWPNV-EFLGVVSD------TSYG-CS-Y----FLNLHKATGHCVLVYMPAG 249 (383)
Q Consensus 184 Lp~~~~~ai~~~~~~-~~~kv~l~~~~~~w~~~-~~~g~~~~------~~~~-~~-~----~~~~~~~~g~~~l~~~~~g 249 (383)
+++.....++++.++ +..++++.++...-+.. ...-.+.+ .... .. . .++...|+|+.++.+++..
T Consensus 297 ~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~ 376 (493)
T TIGR02730 297 LPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPS 376 (493)
T ss_pred cchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCC
Confidence 344333445566554 46678888887432110 00001100 0001 11 1 1122245676676665532
Q ss_pred hhh-------HHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEc----cCCCC-CCCCCcCCCCCCCCChHHH--HHHh
Q 016772 250 QLA-------RDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVS----HWGTD-ANSLGSYSYDTVGKSHDLY--ERLR 315 (383)
Q Consensus 250 ~~a-------~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~----~W~~~-~~~~g~y~~~~~g~~~~~~--~~~~ 315 (383)
+.. .+|... ++++.+.+++.|++++|+..+.+..... +|.+. -...|+|...+........ +..+
T Consensus 377 ~~~~w~~~~~~~y~~~-k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~ 455 (493)
T TIGR02730 377 SMEDWQGLSPKDYEAK-KEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNR 455 (493)
T ss_pred ChhhccCCCcHHHHHH-HHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCC
Confidence 221 123222 5678899999999999875444333321 33321 1124555321110001111 2346
Q ss_pred CCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 353 (383)
+|++|||+||+++++ ++++.||+.||+.+|+.|+..
T Consensus 456 t~i~gLyl~G~~~~p--G~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 456 TAIPGLYCVGDSCFP--GQGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCCCCeEEecCcCCC--CCCHHHHHHHHHHHHHHHHhh
Confidence 889999999999988 469999999999999999865
No 29
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.36 E-value=3.4e-11 Score=107.59 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=113.2
Q ss_pred CCCCCcHHHHHHHHHccCchhhhhhHHHHHHHHHHHh-hhhhcCCCCCccChhccc---c----c---cccCCCce-ecc
Q 016772 50 HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD---K----E---ELLPGGHG-LMV 117 (383)
Q Consensus 50 ~~~d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~---~----~---~~~~g~~~-~~~ 117 (383)
...++|+++||++ .++++.+.+.|+-| ..++|+++..+++..... . . .....+.+ .+.
T Consensus 147 ~~~~~tl~~~L~~----------~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ 216 (447)
T COG2907 147 GQGDTTLAQYLKQ----------RNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVA 216 (447)
T ss_pred cCCCccHHHHHHh----------cCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcc
Confidence 3457899999986 36899999999988 688999999998875421 1 0 11122333 477
Q ss_pred CChHHHHHHHHccCC--cccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhc
Q 016772 118 RGYLPVINTLAKGLD--IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 195 (383)
Q Consensus 118 gG~~~l~~~L~~~l~--I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~ 195 (383)
||...-++.|++++. |.++++|..|..-.++|.|+..+|+..++|+||+++.+.+...++ ++-.++.++.+..+
T Consensus 217 ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL----~e~sp~e~qll~a~ 292 (447)
T COG2907 217 GGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL----DEPSPEERQLLGAL 292 (447)
T ss_pred cchHHHHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc----CCCCHHHHHHHHhh
Confidence 999999999999985 999999999999999999988899989999999999999865432 33344556699999
Q ss_pred CCcccceEEEEcCCCC
Q 016772 196 GVGIENKIIMHFDKVF 211 (383)
Q Consensus 196 ~~~~~~kv~l~~~~~~ 211 (383)
.|.....|. .-+..+
T Consensus 293 ~Ys~n~aVl-htd~~l 307 (447)
T COG2907 293 RYSANTAVL-HTDASL 307 (447)
T ss_pred hhhhceeEE-eecccc
Confidence 998877444 445443
No 30
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.23 E-value=4.1e-10 Score=103.96 Aligned_cols=236 Identities=19% Similarity=0.157 Sum_probs=138.2
Q ss_pred CCCceeccCChHHHHHHHHccC-----CcccCceeEEEEecCCeeE-EEECCCcEEEcCEEEEecChHHHhcCCcccCCC
Q 016772 110 PGGHGLMVRGYLPVINTLAKGL-----DIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVLKARTIKFEPR 183 (383)
Q Consensus 110 ~g~~~~~~gG~~~l~~~L~~~l-----~I~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~ 183 (383)
.++-.|+.|||+.+.+++++.+ +|.+++.|.+|..++++++ |..+||+++++..||+++.+...-..++. .-.
T Consensus 253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp-~e~ 331 (561)
T KOG4254|consen 253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP-GEA 331 (561)
T ss_pred CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC-Ccc
Confidence 4556789999999999999855 6999999999999887755 88999999999999999988765421211 123
Q ss_pred CcHHHHHHHhhcCC-cccce----EEEEcCCCCC---CCCCcceee--------------------cCCCCc----eeEe
Q 016772 184 LPDWKEAAIDDLGV-GIENK----IIMHFDKVFW---PNVEFLGVV--------------------SDTSYG----CSYF 231 (383)
Q Consensus 184 Lp~~~~~ai~~~~~-~~~~k----v~l~~~~~~w---~~~~~~g~~--------------------~~~~~~----~~~~ 231 (383)
||.+. .++++.+ .++.| .|+..+..-- +...+.-.+ ...+.. .+..
T Consensus 332 LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~l 409 (561)
T KOG4254|consen 332 LPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSL 409 (561)
T ss_pred CCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccccc
Confidence 66654 5666643 33333 3444332210 000000000 000000 0112
Q ss_pred eeccCCCCCceEEEEecchhhHHHhcCC-------HHHHHHHHHHHHHHhCCCCCCCcEEE-E-ccCCCCCC---CCCcC
Q 016772 232 LNLHKATGHCVLVYMPAGQLARDIEKMS-------DEAAANFAFTQLKKILPDASSPIQYL-V-SHWGTDAN---SLGSY 299 (383)
Q Consensus 232 ~~~~~~~g~~~l~~~~~g~~a~~~~~~~-------~ee~~~~v~~~L~~~~~~~~~~~~~~-~-~~W~~~~~---~~g~y 299 (383)
++...|+++.++..|+.... .+|+... .++..+++++.+++++|+...-+... + +-=..+.+ .+|.|
T Consensus 410 Dptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn~ 488 (561)
T KOG4254|consen 410 DPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGNI 488 (561)
T ss_pred CCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCcc
Confidence 33344677777777665432 2333332 46788999999999998743332221 1 11111111 23444
Q ss_pred CCCCCCCChH--HHH-----HHhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 016772 300 SYDTVGKSHD--LYE-----RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 300 ~~~~~g~~~~--~~~-----~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 353 (383)
...+.+.... .++ ..++|+++||+||+.+++ +|+|.+|- |+.+|...+..
T Consensus 489 ~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afP--GgGV~a~a--G~~~A~~a~~~ 545 (561)
T KOG4254|consen 489 FHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFP--GGGVMAAA--GRLAAHSAILD 545 (561)
T ss_pred cCcccccccccccCCccccccCCCCCCceEEecCCCCC--CCCccccc--hhHHHHHHhhh
Confidence 3322222111 122 337899999999999999 46777764 88888776554
No 31
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.13 E-value=3.8e-10 Score=110.86 Aligned_cols=80 Identities=28% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCCCccChhc-cccccccCCCceeccCChHHHHHHHHc-----cCCcccCceeEEEEecCCe-eEEEECCCcEEEcCEEE
Q 016772 93 ADAETISLKS-WDKEELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVV 165 (383)
Q Consensus 93 ~~~~~~S~~~-~~~~~~~~g~~~~~~gG~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI 165 (383)
.++...++.. +.......++..+++|||+.|+++|++ +.+|+++++|++|..++++ +.+++.+|+.+++|.||
T Consensus 195 ~~p~~~~a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv 274 (487)
T COG1233 195 APPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVV 274 (487)
T ss_pred CCCCchhHHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeE
Confidence 5666666222 223344567788999999999999998 5689999999999998875 67888888779999999
Q ss_pred EecChHH
Q 016772 166 VAVPLGV 172 (383)
Q Consensus 166 ~t~p~~~ 172 (383)
++.....
T Consensus 275 ~~~~~~~ 281 (487)
T COG1233 275 SNADPAL 281 (487)
T ss_pred ecCchhh
Confidence 9998843
No 32
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.5e-07 Score=89.62 Aligned_cols=271 Identities=19% Similarity=0.102 Sum_probs=146.1
Q ss_pred cCCCCCccChhccccc------cccCCC-ceeccCChH-----HHHHHHHc-cCCcccCceeEEEEecCCe-----eEEE
Q 016772 91 FAADAETISLKSWDKE------ELLPGG-HGLMVRGYL-----PVINTLAK-GLDIRLGHRVTKITRHYIG-----VKVT 152 (383)
Q Consensus 91 ~~~~~~~~S~~~~~~~------~~~~g~-~~~~~gG~~-----~l~~~L~~-~l~I~l~~~V~~I~~~~~~-----v~V~ 152 (383)
...+++..|++.++.. ....+. ...+.|+.. .+.+.+-+ +.+++.+.+|+.|...... +.+.
T Consensus 177 ~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~ 256 (485)
T COG3349 177 TFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGD 256 (485)
T ss_pred cccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeee
Confidence 3468888998765421 011111 223344422 33444442 4479999999999876521 2232
Q ss_pred ECCCc---EEEcCEEEEecChHHHhcCCcccCCC-Cc-HHHHHHHhhcCCcccceEEEEcCCCCC-CCC--Ccceee---
Q 016772 153 VEGGK---TFVADAVVVAVPLGVLKARTIKFEPR-LP-DWKEAAIDDLGVGIENKIIMHFDKVFW-PNV--EFLGVV--- 221 (383)
Q Consensus 153 ~~~G~---~~~ad~VI~t~p~~~l~~~~i~f~p~-Lp-~~~~~ai~~~~~~~~~kv~l~~~~~~w-~~~--~~~g~~--- 221 (383)
.. +. ...++.++.+.....++... |. -+ ......+..++.-++.++.+.|+..-| ... .-++..
T Consensus 257 ~~-~~~~e~~~~~~~~~~~~v~~~~~~~----ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~ 331 (485)
T COG3349 257 VT-GPEQEQQAALAVVDAFAVQRFKRDL----PSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLL 331 (485)
T ss_pred ec-CcceEeeehhhhhcccccchHhhcC----cccccccccccccccccccceeEEEEeecCccccccccchhhhhhccc
Confidence 22 42 34556666666666655321 21 11 111234556677788899999986333 211 100000
Q ss_pred -cCCCCceeEee------eccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCC-CCCCcEEEEccCCCCC
Q 016772 222 -SDTSYGCSYFL------NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDA 293 (383)
Q Consensus 222 -~~~~~~~~~~~------~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~-~~~~~~~~~~~W~~~~ 293 (383)
...+......+ ...++.....+...+. .+..+...+++++.....+.+...+|. ........+.+
T Consensus 332 ~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~----- 404 (485)
T COG3349 332 WSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLV----- 404 (485)
T ss_pred cccccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchhhHHHHHHHHhhhcCCchhccccccccee-----
Confidence 00011111111 0111111111211111 123455667889999999999977775 22221111111
Q ss_pred CCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCcccccCCCcc
Q 016772 294 NSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETP 373 (383)
Q Consensus 294 ~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~~~~~~~~~~~~~~~~~ 373 (383)
..-+.....+|.. ..++...+|+.|++++||++...+.++||+|..||++||+.|++.+...-.+....+-.+..+..
T Consensus 405 -~~q~~~~~~pgs~-~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~~~~~~~~~~~~~~~~v 482 (485)
T COG3349 405 -NQQSLYGLAPGSY-HYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHHAPLDRRDLSDPAPFGV 482 (485)
T ss_pred -ccccccccCCCcc-ccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhhcCccccccccCcCchhh
Confidence 1111122234432 34566678999999999999998889999999999999999999887665633334665555554
Q ss_pred cc
Q 016772 374 IS 375 (383)
Q Consensus 374 ~~ 375 (383)
++
T Consensus 483 l~ 484 (485)
T COG3349 483 LR 484 (485)
T ss_pred cc
Confidence 43
No 33
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.26 E-value=2.4e-05 Score=73.57 Aligned_cols=97 Identities=23% Similarity=0.261 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHh-hhhhcCCCCCccChhccc-cccccCCCceeccCChHHHHHHHHc--cCCcccCceeEEE-EecCCe
Q 016772 74 GLAHKVLQWYLCR-MEGWFAADAETISLKSWD-KEELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKI-TRHYIG 148 (383)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~-~~~~~~g~~~~~~gG~~~l~~~L~~--~l~I~l~~~V~~I-~~~~~~ 148 (383)
+++..+.+-++.. +...||.+. ++++..-. ......++.+.++||..+|++.|.+ +.++ +|++|++| ...+++
T Consensus 80 gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~ 157 (368)
T PF07156_consen 80 GISERFINELVQAATRVNYGQNV-NIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDG 157 (368)
T ss_pred CCCHHHHHHHHHhheEeeccccc-chhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCC
Confidence 3445555545444 566677753 45544322 1111346788999999999999987 4578 99999999 444444
Q ss_pred ---eEEEECC--C-cEEEcCEEEEecChHH
Q 016772 149 ---VKVTVEG--G-KTFVADAVVVAVPLGV 172 (383)
Q Consensus 149 ---v~V~~~~--G-~~~~ad~VI~t~p~~~ 172 (383)
+.|+..+ + ..-.+|+||+|+|+..
T Consensus 158 ~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 158 YSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred ceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 3454432 2 2345799999999954
No 34
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.13 E-value=0.00012 Score=69.30 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHh-hhhhcCCCCCccChhcccc--------ccccC-CCceeccCChHHHHHHHHcc--CCcccCceeE
Q 016772 73 EGLAHKVLQWYLCR-MEGWFAADAETISLKSWDK--------EELLP-GGHGLMVRGYLPVINTLAKG--LDIRLGHRVT 140 (383)
Q Consensus 73 ~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~--------~~~~~-g~~~~~~gG~~~l~~~L~~~--l~I~l~~~V~ 140 (383)
..+++.+.+.|+.+ ....||.+|+++++.++.. ...+. .-.+++++|+.+|+++|.+. ++|+||+.+.
T Consensus 140 ~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~ 219 (377)
T TIGR00031 140 QLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHIN 219 (377)
T ss_pred HHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCCCEEEeCCccc
Confidence 36899999999887 7889999999999986531 11111 12567899999999999975 8999999888
Q ss_pred EEEecCCeeEEEECCCcEEEcCEEEEecChHHHh
Q 016772 141 KITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 174 (383)
Q Consensus 141 ~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~ 174 (383)
.++..++++.+. ++ .+. +.||.|.|++.+-
T Consensus 220 ~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 220 LLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLF 249 (377)
T ss_pred eeeccccceeec--cc-ccc-CcEEEecCchHHH
Confidence 888655555442 23 333 8899999998754
No 35
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.02 E-value=6.9e-05 Score=72.52 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=48.1
Q ss_pred CceeccCChHHHHHHHHc-----cCCcccCceeEEEEecCCe--eEEEECCCcEEEcCEEEEecC
Q 016772 112 GHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVP 169 (383)
Q Consensus 112 ~~~~~~gG~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~t~p 169 (383)
+..++.+|++.|+++|++ +..++|+++|++|..++++ +.|++.+|+++.|++||+..+
T Consensus 223 p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 223 PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred cceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 346788999999999985 3469999999999987644 558888999999999998544
No 36
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.48 E-value=0.0097 Score=56.78 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=37.4
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++++++|++|..++++|.|++.+|++++||.||.|....
T Consensus 120 gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 120 NIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 567999999999998888899988888889999999998765
No 37
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.32 E-value=0.023 Score=54.18 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=35.4
Q ss_pred CCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 131 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
++|+++++|++|..++++|.|++.+|++++||.||.|.-.
T Consensus 122 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~ 161 (385)
T TIGR01988 122 VTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGA 161 (385)
T ss_pred cEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCC
Confidence 6799999999999988889898889988999999987654
No 38
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.04 E-value=0.059 Score=51.63 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=39.9
Q ss_pred HHHHHHHc--cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 122 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.|.+.+.+ +++|+++++|++|..++++|.|++.+|..++||.||.|.-..
T Consensus 117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 34444443 457899999999998888899988888889999999987654
No 39
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.00 E-value=0.057 Score=51.64 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=92.5
Q ss_pred cccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCCCCC
Q 016772 133 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 212 (383)
Q Consensus 133 I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w 212 (383)
.+++++|++|..+++++.|++.+|++++||.||.|.-..-.-+..+ ..+. ....|+... +...++.+.
T Consensus 128 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~--g~~~--------~~~~~~~~~-~~~~v~~~~- 195 (388)
T PRK07494 128 TRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAA--GIGV--------RTWSYPQKA-LVLNFTHSR- 195 (388)
T ss_pred EEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhc--CCCc--------eecCCCCEE-EEEEEeccC-
Confidence 4889999999998899999888898899999998876532111011 1100 011222211 222332221
Q ss_pred CCCCc-ceeecCCCCceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEccCCC
Q 016772 213 PNVEF-LGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGT 291 (383)
Q Consensus 213 ~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~W~~ 291 (383)
+.... .-...+. ....+... +++...++.....+...++...+++++.+.+.+.+..+++.. . ...+
T Consensus 196 ~~~~~~~~~~~~~--g~~~~~Pl--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~--~~~~-- 263 (388)
T PRK07494 196 PHQNVSTEFHTEG--GPFTQVPL--PGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQSMLGKL----T--LEPG-- 263 (388)
T ss_pred CCCCEEEEEeCCC--CcEEEEEC--CCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCCe----E--EccC--
Confidence 11111 0011111 11111111 222222332223333345556777777777766666655431 1 1000
Q ss_pred CCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCC---CCCchhhHHHHHHHHHHHHHHH
Q 016772 292 DANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 292 ~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~---~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
...| +... ...+... -+|+.++||+.|. ..+.+++.|++.+...|+.+..
T Consensus 264 ----~~~~---~l~~--~~~~~~~--~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~ 316 (388)
T PRK07494 264 ----RQAW---PLSG--QVAHRFA--AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVED 316 (388)
T ss_pred ----CcEe---echH--HHHHhhc--cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHh
Confidence 0111 1100 0111222 2699999999664 3334888888888888877653
No 40
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.00 E-value=0.084 Score=50.73 Aligned_cols=41 Identities=32% Similarity=0.398 Sum_probs=36.4
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..+++++.|++.+|++++||.||.|.-.
T Consensus 125 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~ 165 (403)
T PRK07333 125 GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGA 165 (403)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCC
Confidence 56799999999999988889898888888999999999754
No 41
>PRK09126 hypothetical protein; Provisional
Probab=96.97 E-value=0.078 Score=50.75 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=39.8
Q ss_pred HHHHHHc--cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 123 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 123 l~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
|.+++.+ +++|+.+++|+++..+++++.|++.+|++++||.||.|.-..
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCC
Confidence 3444432 567999999999998888888888889899999999988753
No 42
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.95 E-value=0.12 Score=49.65 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=36.7
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++|+.+++|++|..+++++.|++.+|++++||.||.|.-..
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~ 168 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAA 168 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 467999999999999888898988888889999999998653
No 43
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.91 E-value=0.16 Score=48.87 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=36.6
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++|+.+++|++|..++++|.|++.+|++++||.||.|.-..
T Consensus 126 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~ 167 (405)
T PRK05714 126 DIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGAN 167 (405)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 457899999999999888899988899889999999987654
No 44
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.89 E-value=0.14 Score=49.09 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=39.6
Q ss_pred HHHHHHHc--cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 122 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.|.+++.+ +++|+.+++|++|..+++++.|++.+|++++||.||.|.-..
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGAN 168 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 34444433 557889999999998888888888888889999999997654
No 45
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.78 E-value=0.15 Score=48.77 Aligned_cols=193 Identities=17% Similarity=0.156 Sum_probs=97.2
Q ss_pred CCcccCceeEEEEecCCeeEEEEC-CCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhcCCcccceEEEEcCC
Q 016772 131 LDIRLGHRVTKITRHYIGVKVTVE-GGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDK 209 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VI~t~p~~~l~~~~i~f~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~ 209 (383)
++++.+++|+.++.+++.|.|+.. +|++++||.||-|=-.+-.-+.... .+ ......|.... +.+.++.
T Consensus 120 v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~-~~--------~~~~~~y~~~~-l~~~~~~ 189 (387)
T COG0654 120 VTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAG-IA--------EFSGRDYGQTA-LVANVEP 189 (387)
T ss_pred cEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcC-CC--------CccCCCCCceE-EEEEeec
Confidence 579999999999999999888888 9999999999887654432221110 00 01111233322 2222222
Q ss_pred CCCCCCCcceeecCCCCceeEeeeccCCCCCceEEEEecchhhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEccC
Q 016772 210 VFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHW 289 (383)
Q Consensus 210 ~~w~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~W 289 (383)
..+..........+.. ...+.+. ++....++.+.....+.....+++++. ...+.+.++............|
T Consensus 190 ~~~~~~~~~~~~~~~~--~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~ 261 (387)
T COG0654 190 EEPHEGRAGERFTHAG--PFALLPL--PDNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQRRLGERDPLGRVTLVSS 261 (387)
T ss_pred CCCCCCeEEEEecCCC--ceEEEec--CCCceeEEEECChhhHHHHhcCCHHHH----HHHHHHhcCcccccceEEEccc
Confidence 1111111111111111 1111111 112223333333444556666776655 5566667765211111122121
Q ss_pred CCCCCCCCcCCCCCCCCChHHHHHHhCCCCCEEEeccccCC---CCCchhhHHHHHHHHHHHHHHHHH
Q 016772 290 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 290 ~~~~~~~g~y~~~~~g~~~~~~~~~~~p~~~l~faG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
. -.| +... ...+.+.. +++.++||+-|. ..+.+++-|++-+...|+.+.+..
T Consensus 262 ~------~~~---pl~~--~~a~~~~~--~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~ 316 (387)
T COG0654 262 R------SAF---PLSL--RVAERYRR--GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAP 316 (387)
T ss_pred c------ccc---cccc--hhhhheec--CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHh
Confidence 1 111 1111 11122222 689999999664 333588888888888888776654
No 46
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.72 E-value=0.21 Score=48.16 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=40.3
Q ss_pred HHHHHHHc--cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 122 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.|.+++.+ +++|+++++|++|..+++++.|++.+|++++||.||.|--..
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGAN 167 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 34444443 467999999999998888899999899899999999998653
No 47
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.56 E-value=0.25 Score=47.65 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=32.6
Q ss_pred cCCcccCceeEEEEecCCeeEEEECC-C--cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEG-G--KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~-G--~~~~ad~VI~t~p~ 170 (383)
+++++++++|++|..+++++.|++.+ + .+++||.||.|--.
T Consensus 136 ~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~ 179 (415)
T PRK07364 136 NITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGA 179 (415)
T ss_pred CcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCC
Confidence 35689999999999888888877653 2 36999999988654
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.52 E-value=0.22 Score=45.35 Aligned_cols=42 Identities=33% Similarity=0.343 Sum_probs=33.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECC-CcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEG-GKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VI~t~p~~ 171 (383)
+++++++++|++|..+++++.+...+ +.+++||.||.|.-..
T Consensus 105 gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 105 GAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred CCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 46799999999999888887765443 4579999999998764
No 49
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.50 E-value=0.29 Score=46.74 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=37.2
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++|+.+++|++++.++++++|++.+|.+++||.||.|.-..
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~ 166 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGAN 166 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 357999999999999889999999999999999999987654
No 50
>PRK08013 oxidoreductase; Provisional
Probab=96.36 E-value=0.68 Score=44.53 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=39.4
Q ss_pred HHHHHHc--cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 123 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 123 l~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
|.+++.+ +++|+++++|++|..++++|.|+..+|++++||.||-|--..
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~ 167 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGAN 167 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCC
Confidence 3444443 467999999999998888899988899899999999886544
No 51
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.34 E-value=0.01 Score=55.45 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=48.5
Q ss_pred eecc-CChHHHHHHHHcc-----CCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecC
Q 016772 114 GLMV-RGYLPVINTLAKG-----LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 169 (383)
Q Consensus 114 ~~~~-gG~~~l~~~L~~~-----l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p 169 (383)
.++. ...++|+++|.+. ++|+++++|.+|..++.+..|.+.+|+++.||.+|+|+-
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 3444 7789999999764 579999999999999988999999998899999999974
No 52
>PRK10015 oxidoreductase; Provisional
Probab=96.31 E-value=0.21 Score=48.52 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=32.5
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++|+.+++|+.|..+++++.+...++.+++||.||.|.-..
T Consensus 122 Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 122 GAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred CCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 568999999999988777776333345579999999997654
No 53
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.30 E-value=0.0075 Score=51.93 Aligned_cols=47 Identities=38% Similarity=0.531 Sum_probs=34.4
Q ss_pred HHHHHc--cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 124 INTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 124 ~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
.+.+++ +++|+++++|++|.+++++|.|++.+|++++||+||+|+-.
T Consensus 88 l~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 88 LQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 344444 44799999999999999999999999988999999999974
No 54
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.17 E-value=0.33 Score=45.15 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=40.5
Q ss_pred HHHHHHHHc-----cCCcccCceeEEEEecCCeeE-EEECCCcEEEcCEEEEecChHH
Q 016772 121 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 121 ~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
..++..|++ +++|+.+++|++|..++++|. |.+.+| .+.||+||+|+-...
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 455555543 567999999999998877764 777777 799999999998865
No 55
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.16 E-value=0.66 Score=44.24 Aligned_cols=40 Identities=23% Similarity=0.121 Sum_probs=34.1
Q ss_pred CCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 131 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
++++ ++.|++|..+++++.|++.+|.+++||.||.|.-..
T Consensus 127 v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 127 LTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAH 166 (388)
T ss_pred cEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCC
Confidence 4577 999999998888898988888889999999887653
No 56
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.89 E-value=0.88 Score=43.15 Aligned_cols=42 Identities=33% Similarity=0.392 Sum_probs=36.8
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
+++|+++++|++|..+++++.|++.+| .+.||+||+|+....
T Consensus 163 gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 163 GAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred CCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 568999999999999888888988888 799999999998753
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.78 E-value=0.19 Score=48.84 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=33.6
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++|+.+++|++|..+++++.+.+.+|.+++||.||.|.-..
T Consensus 122 Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 122 GAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred CCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 568999999999988777775444566689999999998543
No 58
>PRK06996 hypothetical protein; Provisional
Probab=95.68 E-value=1.1 Score=43.05 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=33.1
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCC---cEEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~t~p 169 (383)
+++++++++|++|+.++++|+|+..+| ++++||.||-|--
T Consensus 129 g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 129 PVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred CCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 356899999999998888998887754 5799999998844
No 59
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.56 E-value=0.02 Score=53.60 Aligned_cols=58 Identities=33% Similarity=0.304 Sum_probs=45.5
Q ss_pred eeccCC---hHHHHHHHHc-----cCCcccCceeEEEEecCCeeE-EEECCCcEEEcCEEEEecChHH
Q 016772 114 GLMVRG---YLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 114 ~~~~gG---~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
+...+| ...++++|.+ +++|+.+++|++|..++++|+ |.+.+|+ +.||+||+|+-+..
T Consensus 137 ~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 137 FFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp EETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred cccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 345566 6777777765 468999999999999999998 9999996 99999999987654
No 60
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.51 E-value=1.3 Score=41.99 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=35.2
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++.+++|++|..+++++.|++.+| ++.||.||+|+...
T Consensus 159 g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred CCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 567999999999998888888888777 79999999998764
No 61
>PRK06184 hypothetical protein; Provisional
Probab=95.48 E-value=0.73 Score=45.80 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=38.5
Q ss_pred HHHHHHc-cCCcccCceeEEEEecCCeeEEEE---CCCcEEEcCEEEEecChHH
Q 016772 123 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 123 l~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VI~t~p~~~ 172 (383)
|.+++.+ +++|+++++|++|+.++++|+|+. .++++++||+||.|.-..-
T Consensus 115 L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 115 LRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 3344433 568999999999999888887766 5667899999999976553
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=95.40 E-value=2.6 Score=40.15 Aligned_cols=50 Identities=36% Similarity=0.320 Sum_probs=40.6
Q ss_pred HHHHHHHccCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 122 PVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.+.+.+.+...+.+++.|++|...++++.|++.+|+.++|+.||-+.++.
T Consensus 92 ~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 92 FLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 34444443345889999999999988888999999999999999998854
No 63
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.37 E-value=0.042 Score=45.30 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=38.4
Q ss_pred hHHHHHHHHccCCc-ccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecC
Q 016772 120 YLPVINTLAKGLDI-RLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 169 (383)
Q Consensus 120 ~~~l~~~L~~~l~I-~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p 169 (383)
++.+.+.+.++++| +...+|+.|...++++.|.+.+|..+.||+||+|+-
T Consensus 104 ~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 104 FDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred HHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 34444444334443 467899999999999999999999999999999974
No 64
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.17 E-value=2.6 Score=40.05 Aligned_cols=40 Identities=3% Similarity=0.064 Sum_probs=34.0
Q ss_pred CCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 131 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
++++.+++|++|..++++|.|++.++ +++||.||.|--..
T Consensus 120 v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 120 ITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred cEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCC
Confidence 46889999999998888998888777 89999999887544
No 65
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.05 E-value=0.041 Score=52.58 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=42.5
Q ss_pred HHHHHHHHc----cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 121 LPVINTLAK----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 121 ~~l~~~L~~----~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
..++.+|++ +++|+.+++|++|+.+++++.|++.+|..+.||+||+|+-...
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 455555544 5579999999999988888889998887799999999987764
No 66
>PRK06126 hypothetical protein; Provisional
Probab=95.01 E-value=1.6 Score=43.86 Aligned_cols=43 Identities=37% Similarity=0.536 Sum_probs=33.8
Q ss_pred cCCcccCceeEEEEecCCeeEEEE---CCCc--EEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTV---EGGK--TFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~---~~G~--~~~ad~VI~t~p~~~ 172 (383)
+++|+++++|++|..++++|.++. .+|+ +++||.||.|.-..-
T Consensus 141 ~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 141 GVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred CceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 468999999999999888877654 3453 689999999876543
No 67
>PRK06185 hypothetical protein; Provisional
Probab=94.94 E-value=2.2 Score=40.93 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=32.3
Q ss_pred cCCcccCceeEEEEecCCee---EEEECCCc-EEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGV---KVTVEGGK-TFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v---~V~~~~G~-~~~ad~VI~t~p~~ 171 (383)
+++++.+++|+++..+++++ .+.+.+|+ +++||.||.|.-..
T Consensus 123 ~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~ 168 (407)
T PRK06185 123 NFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRH 168 (407)
T ss_pred CcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCc
Confidence 46799999999999887765 33445664 79999999998554
No 68
>PRK07045 putative monooxygenase; Reviewed
Probab=94.80 E-value=2 Score=41.01 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=34.9
Q ss_pred cCCcccCceeEEEEecCCee--EEEECCCcEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGV--KVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v--~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
+++|+++++|+.|..+++++ .|++.+|+++++|.||.|--..-
T Consensus 121 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 121 NVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred CeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 35699999999999876663 57888898999999998876543
No 69
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=94.78 E-value=1.3 Score=42.45 Aligned_cols=42 Identities=33% Similarity=0.388 Sum_probs=33.5
Q ss_pred ccCCcccCceeEEEEecCCeeEEEE-CCCcEEEcCEEEEecCh
Q 016772 129 KGLDIRLGHRVTKITRHYIGVKVTV-EGGKTFVADAVVVAVPL 170 (383)
Q Consensus 129 ~~l~I~l~~~V~~I~~~~~~v~V~~-~~G~~~~ad~VI~t~p~ 170 (383)
.+.+++.+++|+.+..+++++.+.. .++.+++|+.||.|.-+
T Consensus 108 aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 108 AGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred cCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 3668999999999999988866444 33367999999999844
No 70
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.66 E-value=3.2 Score=40.45 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=38.1
Q ss_pred HHHHHHHc----cCCcccCceeEEEEec-------CCeeEEEECCCcEEEcCEEEEecChH
Q 016772 122 PVINTLAK----GLDIRLGHRVTKITRH-------YIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~----~l~I~l~~~V~~I~~~-------~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.|.+.+.+ +++++++++|++|+.+ +++|.|++.+|++++||.||-|--..
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~ 182 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSN 182 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCC
Confidence 34555544 2579999999999753 45688888999999999999886543
No 71
>PRK11445 putative oxidoreductase; Provisional
Probab=94.64 E-value=3.7 Score=38.63 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=35.4
Q ss_pred HccCCcccCceeEEEEecCCeeEEEE-CCCc--EEEcCEEEEecChH
Q 016772 128 AKGLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPLG 171 (383)
Q Consensus 128 ~~~l~I~l~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VI~t~p~~ 171 (383)
..++++++++.|++|..+++++.|++ .+|+ +++||.||.|.-..
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 34678999999999998888888775 5664 68999999887654
No 72
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=94.47 E-value=0.081 Score=50.88 Aligned_cols=51 Identities=29% Similarity=0.478 Sum_probs=36.6
Q ss_pred ChHHHHHHHHc-----cCCcccCceeEEEEecCCe-eEEEECCCcEEEcCEEEEecC
Q 016772 119 GYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVP 169 (383)
Q Consensus 119 G~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~t~p 169 (383)
-...+++.|.+ +++|+++++|.+|..++++ +.|.+.+++.+.||+||+|+-
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE---
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC
Confidence 46778888865 5679999999999998888 778886777899999999963
No 73
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.27 E-value=0.58 Score=45.28 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=40.9
Q ss_pred CCceeccCChHHHHHHHHc-----cCCcccCceeEEEEecCC-eeE-EEECCCcEEEcCEEEEe
Q 016772 111 GGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYI-GVK-VTVEGGKTFVADAVVVA 167 (383)
Q Consensus 111 g~~~~~~gG~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~-~v~-V~~~~G~~~~ad~VI~t 167 (383)
++..++.-|.+.|++++.+ +....||++|.+|..+++ ++. |.+ +|+++.|++||+.
T Consensus 222 sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 222 SPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp SSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred CCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 4566788899999999987 335899999999998544 444 554 7889999999964
No 74
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=93.85 E-value=0.16 Score=48.87 Aligned_cols=54 Identities=26% Similarity=0.306 Sum_probs=42.0
Q ss_pred hHHHHHHHHc-----cCCcccCceeEEEEecCCe-eEEEECCCcE-EEcCEEEEecChHHH
Q 016772 120 YLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKT-FVADAVVVAVPLGVL 173 (383)
Q Consensus 120 ~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~V~~~~G~~-~~ad~VI~t~p~~~l 173 (383)
+..+..+|++ +..|+||++|+.|+..+++ ..+.+.+|++ ++|+.||.+.....+
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 4445555543 5679999999999999885 4577888866 999999999987654
No 75
>PRK07588 hypothetical protein; Provisional
Probab=93.34 E-value=0.17 Score=48.50 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=39.1
Q ss_pred HHHHccCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 125 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 125 ~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++..+++|+++++|++|+.++++|.|++.+|++++||.||.|--..
T Consensus 111 ~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 111 TAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred HhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 33334467999999999999889999999999889999999887654
No 76
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=93.24 E-value=7.8 Score=38.97 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=36.0
Q ss_pred HHHHHHc--cCCcccCceeEEEEecCCeeEEEE--CCCc-EEEcCEEEEecChH
Q 016772 123 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTV--EGGK-TFVADAVVVAVPLG 171 (383)
Q Consensus 123 l~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~--~~G~-~~~ad~VI~t~p~~ 171 (383)
|.+++.+ +++|+++++|+++..++++|.++. .+|. +++||.||.|.-..
T Consensus 131 L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~ 184 (547)
T PRK08132 131 LVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGAR 184 (547)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCC
Confidence 3444443 357999999999999888877654 3554 68999999988543
No 77
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=93.23 E-value=8.2 Score=37.05 Aligned_cols=42 Identities=33% Similarity=0.204 Sum_probs=32.5
Q ss_pred cCCcccCceeEEEEec-CCee-EEEECCCcEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRH-YIGV-KVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~-~~~v-~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
+++++.+++|++|... ++++ .|++.+| .+.|++||+++....
T Consensus 197 Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 197 GVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred CCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 5689999999999864 4554 4778888 699999988876543
No 78
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=93.22 E-value=0.19 Score=47.92 Aligned_cols=41 Identities=32% Similarity=0.310 Sum_probs=35.2
Q ss_pred cCCcccCceeEEEEecCCeeE-EEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|..|..+++.+. |.+.+|+++.||+||+|+--
T Consensus 187 G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 187 GGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred CcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 458999999999999888654 77889999999999999853
No 79
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=92.74 E-value=0.26 Score=47.61 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=42.9
Q ss_pred HHHHHHHHccC---CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 121 LPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 121 ~~l~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
..|.+.|.+.+ .++++++|++|..++++|.|++.+|++++||.||.|--..-
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 35667776655 48999999999988888999988998899999999976543
No 80
>PRK07236 hypothetical protein; Provisional
Probab=92.73 E-value=0.28 Score=46.93 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=43.2
Q ss_pred ChHHHHHHHHccC---CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecC
Q 016772 119 GYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 169 (383)
Q Consensus 119 G~~~l~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p 169 (383)
++..+.+.|.+.+ +|+++++|++|..++++|+|++.+|++++||.||.|--
T Consensus 98 ~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG 151 (386)
T PRK07236 98 SWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADG 151 (386)
T ss_pred CHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCC
Confidence 5667777777654 59999999999998889999999999999999999843
No 81
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=92.30 E-value=0.36 Score=47.77 Aligned_cols=42 Identities=29% Similarity=0.219 Sum_probs=34.7
Q ss_pred CCcccCceeEEEEec-CCeeEEEECCCcEEEcCEEEEecChHHH
Q 016772 131 LDIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVL 173 (383)
Q Consensus 131 l~I~l~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VI~t~p~~~l 173 (383)
++|+++++|+.|..+ ++.+.|++.+| ++.||.||+++-...+
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 468999999999987 44577888888 6999999999976553
No 82
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=92.17 E-value=10 Score=36.03 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=33.0
Q ss_pred CCcccCceeEEEEec-CCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 131 LDIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 131 l~I~l~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
+.+ +++.|+.+..+ ++.+.|++.+|++++||.||.|.....
T Consensus 100 v~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 100 VLW-LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cEE-EccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 445 46789998877 556778888888899999999998764
No 83
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=91.92 E-value=0.41 Score=45.92 Aligned_cols=51 Identities=31% Similarity=0.433 Sum_probs=41.0
Q ss_pred HHHHHHHHc-----cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 121 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 121 ~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
..+.++|.+ +++|+++++|++|..+++++.|.+.+| ++.||.||+|+....
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 556666643 557999999999998888888888777 799999999987653
No 84
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=91.71 E-value=0.39 Score=45.58 Aligned_cols=52 Identities=25% Similarity=0.257 Sum_probs=39.7
Q ss_pred cCChHHHHHHHHc-----cCCcccCceeEEEEecCCeeEEEECCC-cEEEcCEEEEecCh
Q 016772 117 VRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPL 170 (383)
Q Consensus 117 ~gG~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~t~p~ 170 (383)
.+-.+.++++|.+ +++|+++++|++| +++++.|.+.++ ..+.||+||+|+--
T Consensus 82 S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence 4567888888875 5679999999999 344577776543 46999999999853
No 85
>PRK05868 hypothetical protein; Validated
Probab=91.66 E-value=0.36 Score=45.98 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=36.7
Q ss_pred ccCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 129 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 129 ~~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.+++|+++++|++|+.++++|+|+..+|++++||.||-|--..
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence 3567999999999998888899999999899999999876543
No 86
>PRK06847 hypothetical protein; Provisional
Probab=91.53 E-value=0.48 Score=45.00 Aligned_cols=42 Identities=45% Similarity=0.428 Sum_probs=37.2
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++|+++++|++|..+++++.|++.+|+++.||.||.|.-..
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 567999999999998888888888899899999999998654
No 87
>PRK06753 hypothetical protein; Provisional
Probab=91.50 E-value=0.47 Score=45.01 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHHccC---CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 121 LPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 121 ~~l~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
..|.+.|.+.+ +|+++++|++|+.++++|.|++.+|+++++|.||-|--..
T Consensus 98 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~ 151 (373)
T PRK06753 98 QTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIH 151 (373)
T ss_pred HHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcc
Confidence 44556665544 5999999999998888899999999889999999887644
No 88
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.24 E-value=4.8 Score=38.18 Aligned_cols=51 Identities=33% Similarity=0.325 Sum_probs=37.7
Q ss_pred HHHHHHHHc-----c-CCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 121 LPVINTLAK-----G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 121 ~~l~~~L~~-----~-l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
..++++|++ + ..+..+++|..+..+++.+.|.|.+|+ +.||+||+|+-...
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 345555554 2 247779999999885345678898886 99999999998764
No 89
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=90.61 E-value=1 Score=43.38 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=39.7
Q ss_pred ChHHHHHHHHc-----cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 119 GYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 119 G~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
....+.+.|.+ +++|+++++|++|..+++.+.|++ +++.+.||+||+|+..
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGG 158 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCC
Confidence 34566666654 457999999999988777777777 4557999999999975
No 90
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.58 E-value=0.48 Score=48.84 Aligned_cols=52 Identities=27% Similarity=0.362 Sum_probs=41.9
Q ss_pred HHHHHHHHc----cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 121 LPVINTLAK----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 121 ~~l~~~L~~----~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
..++++|.+ +++|+.+++|++|..++++|.|.+.+|..+.||.||+|+-...
T Consensus 408 ~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 355566544 3678899999999988888989888887788999999988764
No 91
>PRK06834 hypothetical protein; Provisional
Probab=90.52 E-value=0.67 Score=45.88 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=36.1
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..++++|.|++.+|++++||+||.|.-.
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~ 154 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGG 154 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCC
Confidence 46799999999999998999988888888999999998754
No 92
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=90.40 E-value=22 Score=36.57 Aligned_cols=41 Identities=24% Similarity=0.191 Sum_probs=29.8
Q ss_pred CCcccCceeEEEEecCC---eeEEEEC------CC--cEEEcCEEEEecChH
Q 016772 131 LDIRLGHRVTKITRHYI---GVKVTVE------GG--KTFVADAVVVAVPLG 171 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~---~v~V~~~------~G--~~~~ad~VI~t~p~~ 171 (383)
++++++++|++++.+++ +|+|+.. +| ++++||+||-|=-..
T Consensus 158 v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~ 209 (634)
T PRK08294 158 LEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGAR 209 (634)
T ss_pred eEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCc
Confidence 35789999999987643 3766653 35 579999999876543
No 93
>PRK09897 hypothetical protein; Provisional
Probab=90.33 E-value=0.62 Score=46.45 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=33.7
Q ss_pred CCcccCceeEEEEecCCeeEEEECC-CcEEEcCEEEEecCh
Q 016772 131 LDIRLGHRVTKITRHYIGVKVTVEG-GKTFVADAVVVAVPL 170 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VI~t~p~ 170 (383)
+.|+.+++|+.|..+++++.|++.+ |..+.||+||+|+--
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 4677899999999988899888755 467999999999853
No 94
>PRK06116 glutathione reductase; Validated
Probab=90.11 E-value=0.72 Score=45.11 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=34.3
Q ss_pred cCCcccCceeEEEEecCCe-eEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..++++ +.|++.+|+++.||.||+++-.
T Consensus 222 GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 222 GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 5679999999999876555 7788888888999999999753
No 95
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.11 E-value=0.75 Score=45.15 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=37.6
Q ss_pred HHHHHHHHc-----cCC--cccCceeEEEEecCCeeEEEECCC--c--EEEcCEEEEecCh
Q 016772 121 LPVINTLAK-----GLD--IRLGHRVTKITRHYIGVKVTVEGG--K--TFVADAVVVAVPL 170 (383)
Q Consensus 121 ~~l~~~L~~-----~l~--I~l~~~V~~I~~~~~~v~V~~~~G--~--~~~ad~VI~t~p~ 170 (383)
..+.+.|.+ ++. |+++++|++|+..+++|.|++.++ . +..+|+||+|+-.
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccC
Confidence 445555543 454 899999999999888898887543 2 4579999999875
No 96
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=90.02 E-value=0.69 Score=45.44 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=32.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++|+.+++|++|.. ++.+.|+|.+| .+.||+||+|+-..
T Consensus 197 Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 197 GVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred CCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence 568999999999985 45577888888 69999999998654
No 97
>PRK07846 mycothione reductase; Reviewed
Probab=89.95 E-value=0.75 Score=45.05 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=35.6
Q ss_pred ccCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 129 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 129 ~~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
++++++++++|++|+.+++++.|.+.+|+.+.+|.||+++..
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 260 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR 260 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC
Confidence 456799999999998777777788888888999999999865
No 98
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=89.78 E-value=0.78 Score=44.22 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=34.5
Q ss_pred cCCcccCceeEEEEecCCeeE-EEECCCcEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
+++|+++++|++|..+++++. |++.+| ++.||+||+|+....
T Consensus 215 G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 215 GVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 567999999999998877764 677665 799999999998753
No 99
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=89.44 E-value=0.99 Score=44.24 Aligned_cols=42 Identities=40% Similarity=0.556 Sum_probs=35.7
Q ss_pred ccCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 129 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 129 ~~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++++++++.|++|..+++++.|++.+|+++.+|.||+++..
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 356799999999998877778787778888999999999864
No 100
>PRK07190 hypothetical protein; Provisional
Probab=89.33 E-value=0.88 Score=45.02 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=37.3
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
+++|+++++|++|..++++|.+++.+|++++|++||.|.-..-
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 5689999999999999889888888888899999999986543
No 101
>PRK08163 salicylate hydroxylase; Provisional
Probab=89.27 E-value=0.83 Score=43.73 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=39.3
Q ss_pred HHHHHHHc--cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 122 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.|.+.+.+ +++++++++|++|..++++|.|++.+|+++.||.||.|.-..
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVK 165 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcC
Confidence 34444433 257899999999998888898988889889999999987554
No 102
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=89.18 E-value=0.91 Score=44.88 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=39.1
Q ss_pred hHHHHHHHHc--cCCcccCceeEEEEec-CCeeEEE---ECCCc--EEEcCEEEEecChHH
Q 016772 120 YLPVINTLAK--GLDIRLGHRVTKITRH-YIGVKVT---VEGGK--TFVADAVVVAVPLGV 172 (383)
Q Consensus 120 ~~~l~~~L~~--~l~I~l~~~V~~I~~~-~~~v~V~---~~~G~--~~~ad~VI~t~p~~~ 172 (383)
..+|.+++.+ +++|+++++|+.|..+ +++|+|+ +.+|+ +++||+||+|+-...
T Consensus 187 ~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 187 TRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 3455555532 5689999999999987 6677765 44553 689999999997765
No 103
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.99 E-value=0.95 Score=43.62 Aligned_cols=43 Identities=37% Similarity=0.515 Sum_probs=33.8
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCC-----cEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGG-----KTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VI~t~p~~~ 172 (383)
+++|+.+++|++|..++++|.+.+.++ .+++||+||+|+-...
T Consensus 211 G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 211 GVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 567999999999998777777654332 3689999999998754
No 104
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=88.98 E-value=1 Score=42.98 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=35.5
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++++++++|++|..+++++.|++.+|+++.||.||+++..
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 56799999999999877777788889989999999999764
No 105
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=88.62 E-value=23 Score=33.81 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=31.4
Q ss_pred cCCcccCceeEEEEe-cCCeeEEEE-CCCc--EEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITR-HYIGVKVTV-EGGK--TFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~-~~~~v~V~~-~~G~--~~~ad~VI~t~p~~ 171 (383)
+++++++++|++|.. +++++.|+. .+|+ +++||.||-|--..
T Consensus 117 gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~ 162 (392)
T PRK08243 117 GGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFH 162 (392)
T ss_pred CCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCC
Confidence 568999999999986 556666665 4664 68999888776543
No 106
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=88.61 E-value=1.5 Score=43.83 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=26.2
Q ss_pred CCEEEeccccCCCCC--chhhHHHHHHHHHHHHHHH
Q 016772 319 DNLFFAGEATSMSYP--GSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 319 ~~l~faG~~~~~~~~--g~v~gA~~SG~~aA~~i~~ 352 (383)
.||-|.|..+-...- =+++-++++|+.|+-.++.
T Consensus 487 ~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 487 TNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred ceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 589999987664211 2899999999999987764
No 107
>PLN02507 glutathione reductase
Probab=88.55 E-value=1.2 Score=44.30 Aligned_cols=41 Identities=32% Similarity=0.523 Sum_probs=35.3
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|..+++++.|.+.+|+++.+|.||+++..
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 56899999999998777778788888888999999999864
No 108
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=88.36 E-value=1.2 Score=43.82 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=35.1
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..+++++.+++.+|+.+++|.||+++..
T Consensus 230 gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 270 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR 270 (461)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC
Confidence 56799999999998777778787778888999999999864
No 109
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=88.05 E-value=1.3 Score=42.55 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=36.3
Q ss_pred HHHHHHc-cCCcccCceeEEEEecCCeeE-EEECCC--cEEEcCEEEEecChH
Q 016772 123 VINTLAK-GLDIRLGHRVTKITRHYIGVK-VTVEGG--KTFVADAVVVAVPLG 171 (383)
Q Consensus 123 l~~~L~~-~l~I~l~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VI~t~p~~ 171 (383)
|.+++.+ +.+|+.+++|.+|..++++++ |.+.++ ..++||+||+|+-..
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 3344333 447889999999998888876 565665 479999999997654
No 110
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=87.88 E-value=1.4 Score=45.13 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=42.7
Q ss_pred HHHHHHHHccC---CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 121 LPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 121 ~~l~~~L~~~l---~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
..|.+.|.+.+ .++++++|++|..++++|+|++.+|+++++|.||.|--..-
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 45777777765 27899999999998899999999998899999998876543
No 111
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=87.87 E-value=0.69 Score=33.06 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=26.9
Q ss_pred HHHHHHc-cCCcccCceeEEEEecCCeeEEEECCC
Q 016772 123 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG 156 (383)
Q Consensus 123 l~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~G 156 (383)
+.+.|.+ +++|++|+.|++|..+++++.|+++||
T Consensus 46 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 46 LEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 3444433 578999999999999988877888876
No 112
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.38 E-value=1.3 Score=43.57 Aligned_cols=41 Identities=41% Similarity=0.588 Sum_probs=34.0
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCC---cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..+++++.+.+.+| +.+.+|.||+++..
T Consensus 227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 567999999999998777777776665 67999999999765
No 113
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=87.37 E-value=1.5 Score=43.21 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=34.8
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|+.+++++.|.+.+|+.+.+|.||+++..
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC
Confidence 46789999999998777778787778888999999998764
No 114
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=87.29 E-value=1.6 Score=39.81 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=34.6
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
++++++ +.|++|+..++++.|++.+|+.+.+|+||+|+-.
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC
Confidence 457878 8999999888888888888888999999999975
No 115
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=87.19 E-value=1.5 Score=43.07 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=34.8
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCC--cEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VI~t~p~~ 171 (383)
+++|++++.|++|..+++++.+.+.+| +++.+|.||+++...
T Consensus 225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 567999999999998877887777667 479999999998653
No 116
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=87.03 E-value=1.3 Score=43.81 Aligned_cols=51 Identities=35% Similarity=0.526 Sum_probs=36.1
Q ss_pred HHHHHHHc-c-CCcccCceeEEEEecCCe-eEEEE---CCCc--EEEcCEEEEecChHH
Q 016772 122 PVINTLAK-G-LDIRLGHRVTKITRHYIG-VKVTV---EGGK--TFVADAVVVAVPLGV 172 (383)
Q Consensus 122 ~l~~~L~~-~-l~I~l~~~V~~I~~~~~~-v~V~~---~~G~--~~~ad~VI~t~p~~~ 172 (383)
.|.+++.+ + ++|+++++|++|..++++ |.|++ .+|+ +++||+||+++....
T Consensus 188 aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 188 QLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 33444433 3 689999999999986654 66654 3353 689999999987764
No 117
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=87.01 E-value=1.6 Score=42.65 Aligned_cols=41 Identities=37% Similarity=0.472 Sum_probs=34.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
++++++++.|++|...++++.|++.+|+.+.+|.||+++..
T Consensus 221 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 221 GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 56799999999998776777777778888999999999864
No 118
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=86.74 E-value=1.6 Score=41.86 Aligned_cols=40 Identities=25% Similarity=0.455 Sum_probs=33.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|.. ++.+.|++.+|+++.||.||+++..
T Consensus 200 GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 200 GVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 678999999999976 4567788888989999999998864
No 119
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=85.89 E-value=2.2 Score=41.54 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=38.7
Q ss_pred ccCChHHHHHHHHc-----cCCcccCceeEEEEec--CCeeE-EEEC-CCcEEEcCEEEEecC
Q 016772 116 MVRGYLPVINTLAK-----GLDIRLGHRVTKITRH--YIGVK-VTVE-GGKTFVADAVVVAVP 169 (383)
Q Consensus 116 ~~gG~~~l~~~L~~-----~l~I~l~~~V~~I~~~--~~~v~-V~~~-~G~~~~ad~VI~t~p 169 (383)
..+|...+++.|.+ +++|+++++|++|..+ ++.|. |.+. ++..+.|+.||+|+-
T Consensus 118 ~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 118 LRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 34566677777754 4579999999999876 34443 4443 345799999999986
No 120
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=84.64 E-value=2.1 Score=41.79 Aligned_cols=39 Identities=44% Similarity=0.572 Sum_probs=33.8
Q ss_pred CCcccCceeEEEEecCCeeEEEECCCc--EEEcCEEEEecC
Q 016772 131 LDIRLGHRVTKITRHYIGVKVTVEGGK--TFVADAVVVAVP 169 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~~v~V~~~~G~--~~~ad~VI~t~p 169 (383)
++|+++++|++++..++++.|++++|+ .+++|.|++|+-
T Consensus 229 v~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 229 VKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIG 269 (454)
T ss_pred eEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccC
Confidence 469999999999988887888888775 688999999984
No 121
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=84.42 E-value=2.7 Score=42.01 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=36.3
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++++++|++|..+++.+.|++.+|+.+.+|+||+|+-..
T Consensus 281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 467899999999998777788888888889999999999764
No 122
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=84.14 E-value=2.3 Score=42.01 Aligned_cols=52 Identities=31% Similarity=0.386 Sum_probs=37.0
Q ss_pred HHHHHHHHc-----cCCcccCceeEEEEecCC-eeEEEE---CCC--cEEEcCEEEEecChHH
Q 016772 121 LPVINTLAK-----GLDIRLGHRVTKITRHYI-GVKVTV---EGG--KTFVADAVVVAVPLGV 172 (383)
Q Consensus 121 ~~l~~~L~~-----~l~I~l~~~V~~I~~~~~-~v~V~~---~~G--~~~~ad~VI~t~p~~~ 172 (383)
..+.++|.+ +++|+++++|++|..+++ +|.|++ .+| .+++||+||+|+-...
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 455555543 567999999999998654 566643 334 3689999999997654
No 123
>PLN02463 lycopene beta cyclase
Probab=84.10 E-value=2.5 Score=41.34 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=34.2
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++ +++|++|...++++.|++.+|++++||.||.|.-..
T Consensus 128 GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 128 GVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred CCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 45554 679999999888899999999889999999998543
No 124
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=83.92 E-value=3 Score=40.39 Aligned_cols=41 Identities=20% Similarity=0.002 Sum_probs=31.9
Q ss_pred cCCcccCceeEEEEecCCeeEE-EECCC--cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKV-TVEGG--KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V-~~~~G--~~~~ad~VI~t~p~ 170 (383)
+++|+++++|+++..+++++.+ .+.+| ..++||+||+|+--
T Consensus 273 Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 273 GGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 5579999999999988777663 44455 35899999999764
No 125
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=83.82 E-value=2.9 Score=40.39 Aligned_cols=54 Identities=30% Similarity=0.414 Sum_probs=39.4
Q ss_pred hHHHHHHHHc------cCCcccCceeEEEEecCCe-eEEEEC-----CCcEEEcCEEEEecChHHH
Q 016772 120 YLPVINTLAK------GLDIRLGHRVTKITRHYIG-VKVTVE-----GGKTFVADAVVVAVPLGVL 173 (383)
Q Consensus 120 ~~~l~~~L~~------~l~I~l~~~V~~I~~~~~~-v~V~~~-----~G~~~~ad~VI~t~p~~~l 173 (383)
++.|.+.|.+ ++++++|++|+.|++.+++ |.|++. +..++.|+.|++..--..|
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 4555555543 3579999999999998877 877653 2257999999998855443
No 126
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=83.71 E-value=2.9 Score=41.77 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=36.6
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++++++|++|...++.+.|++.+|+.+.||+||+|+-..
T Consensus 280 gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 280 DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 457889999999999877888888888889999999999874
No 127
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=83.34 E-value=2.7 Score=38.84 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=37.4
Q ss_pred cCCcccCceeEEEEe---cCCeeEEEECCCcEEEcCEEEEecChHHHh
Q 016772 130 GLDIRLGHRVTKITR---HYIGVKVTVEGGKTFVADAVVVAVPLGVLK 174 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~---~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~ 174 (383)
++.++-+..|+.++. ++..|.|+|.+|..|.|+.+|+|+-+..-+
T Consensus 167 G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 167 GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred CeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 446899999999885 344578999999889999999999998754
No 128
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=83.13 E-value=3 Score=40.67 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=32.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++++++++|++|..+++++.+.+.+| ++.+|.||+++..
T Consensus 213 gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 213 GVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 568999999999998777777777666 5899999999753
No 129
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=83.12 E-value=2.2 Score=40.25 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=35.4
Q ss_pred HHHHHHHHc--cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 121 LPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 121 ~~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
..|.+++.+ +++|+.+++|++|+.. .|++.+| .++||+||+|+-...
T Consensus 149 ~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 455555543 6789999999999642 5777777 478999999998753
No 130
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=83.09 E-value=1.4 Score=40.35 Aligned_cols=91 Identities=13% Similarity=0.256 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHh-hhhhcCCCCCccChhcccc--------ccccCCC-ceeccCChHHHHHHHHc--cCCcccCceeEE
Q 016772 74 GLAHKVLQWYLCR-MEGWFAADAETISLKSWDK--------EELLPGG-HGLMVRGYLPVINTLAK--GLDIRLGHRVTK 141 (383)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~~--------~~~~~g~-~~~~~gG~~~l~~~L~~--~l~I~l~~~V~~ 141 (383)
.+++.+.+.|+.. ...-||.+|.++.+..... ...|... .+.+++|+-++++.|++ .++|+||+.-..
T Consensus 141 ~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd~~~ 220 (374)
T COG0562 141 LVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTDFFD 220 (374)
T ss_pred HHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCCCceEEecCcHHH
Confidence 4678888888875 6778999999999865321 1122222 45689999999999998 778999988666
Q ss_pred EEecCCeeEEEECCCcEEEcCEEEEecChHHHh
Q 016772 142 ITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 174 (383)
Q Consensus 142 I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~l~ 174 (383)
|..... + ..+..||-|-|+..+-
T Consensus 221 ~~~~~~--------~--~~~~~VvytG~iD~~F 243 (374)
T COG0562 221 VKDQLR--------A--IPFAPVVYTGPIDAYF 243 (374)
T ss_pred Hhhhhc--------c--cCCCceEEecchHhhh
Confidence 643321 1 3455899999998753
No 131
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=83.03 E-value=3.1 Score=41.63 Aligned_cols=40 Identities=40% Similarity=0.320 Sum_probs=29.8
Q ss_pred CcccCceeEEEEecC-----CeeEEEECC-Cc--EEEcCEEEEecChH
Q 016772 132 DIRLGHRVTKITRHY-----IGVKVTVEG-GK--TFVADAVVVAVPLG 171 (383)
Q Consensus 132 ~I~l~~~V~~I~~~~-----~~v~V~~~~-G~--~~~ad~VI~t~p~~ 171 (383)
.|++|++|++|++.+ ++|.|++.+ |+ +..+|+||+|+-..
T Consensus 102 ~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 102 HIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp GEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred eEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 399999999999864 358888754 42 35789999998543
No 132
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=82.70 E-value=2.6 Score=42.31 Aligned_cols=43 Identities=35% Similarity=0.411 Sum_probs=35.1
Q ss_pred cCCcccCceeEEEEecCCeeEEEEC--CC--cEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VI~t~p~~~ 172 (383)
+++|+++++|++|..++++|+|++. +| ++++||.||-|--..-
T Consensus 128 gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 128 HVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANS 174 (538)
T ss_pred CcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCch
Confidence 5679999999999999999887765 56 4689999998876543
No 133
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=82.38 E-value=3.7 Score=39.16 Aligned_cols=51 Identities=29% Similarity=0.324 Sum_probs=37.0
Q ss_pred ChHHHHHHHHcc---CCcccCceeEEEEecCCeeE-EEECCCcEEEcCEEEEecCh
Q 016772 119 GYLPVINTLAKG---LDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 119 G~~~l~~~L~~~---l~I~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~t~p~ 170 (383)
-++..+....+. +.| ....|+.|..++++|. |.+.+|+.+.||.||+|+-.
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 345444444333 456 4689999999988876 89999999999999999976
No 134
>PRK14727 putative mercuric reductase; Provisional
Probab=82.05 E-value=3.7 Score=40.57 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=33.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++|+++++|++|..+++++.|.+.+| ++.||.||+++...
T Consensus 242 GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence 567999999999987777777777666 68999999998764
No 135
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=81.79 E-value=3.7 Score=40.19 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=32.8
Q ss_pred cCCcccCceeEEEEecCCe-eEEEECCC-cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIG-VKVTVEGG-KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~-v~V~~~~G-~~~~ad~VI~t~p~ 170 (383)
++++++++.|++|..++++ +.|++.+| +.+.+|.||+++..
T Consensus 221 gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 221 GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR 263 (450)
T ss_pred CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC
Confidence 5679999999999875444 66777777 56999999999864
No 136
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=81.54 E-value=3.5 Score=40.58 Aligned_cols=41 Identities=34% Similarity=0.467 Sum_probs=31.7
Q ss_pred cCCcccCceeEEEEecCCeeEEEEC--CC--cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVE--GG--KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..+++++.+++. +| +++.+|.||+++-.
T Consensus 227 gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 227 GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 5689999999999876666655543 56 36999999999753
No 137
>PRK06475 salicylate hydroxylase; Provisional
Probab=81.35 E-value=3.6 Score=39.48 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=33.4
Q ss_pred cCCcccCceeEEEEecCCeeEEEE---CCCcEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VI~t~p~~~ 172 (383)
+++|+++++|++|..++++|.|+. .++++++||.||-|=-..-
T Consensus 122 ~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 122 GIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred CcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 357999999999998888887765 3345789999998865543
No 138
>PTZ00052 thioredoxin reductase; Provisional
Probab=81.30 E-value=4 Score=40.59 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=34.0
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
++++++++.|++|...++++.|...+|+++.+|.||+++..
T Consensus 236 GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 276 (499)
T PTZ00052 236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR 276 (499)
T ss_pred CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC
Confidence 56799999999998766667777778888999999999864
No 139
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=81.30 E-value=3.4 Score=40.76 Aligned_cols=41 Identities=34% Similarity=0.550 Sum_probs=32.2
Q ss_pred cCCcccCceeEEEEecCCeeEEEECC--C--cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEG--G--KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~--G--~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|..+++++.|...+ | +.+.+|.||+++..
T Consensus 238 gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred CcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 56799999999998877777665433 3 46899999999864
No 140
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=81.30 E-value=4 Score=40.43 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=32.5
Q ss_pred cCCcccCceeEEEEecCCe-eEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|..++++ +.|++.+|+.+.+|.||+++-.
T Consensus 245 GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 245 GINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 4579999999999876544 5577677878999999998753
No 141
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=80.41 E-value=4.4 Score=39.46 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=32.3
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++++++++|++|+.+++++.+++ +|+++.+|.||+++-.
T Consensus 212 GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 212 GITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 578999999999987666666654 4668999999998754
No 142
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=80.27 E-value=0.26 Score=42.15 Aligned_cols=78 Identities=17% Similarity=0.295 Sum_probs=49.3
Q ss_pred hhhhcCCCCCccChhcccc--------ccccCCC-ceeccCChHHHHHHHH--ccCCcccCceeEEEEecCCeeEEEECC
Q 016772 87 MEGWFAADAETISLKSWDK--------EELLPGG-HGLMVRGYLPVINTLA--KGLDIRLGHRVTKITRHYIGVKVTVEG 155 (383)
Q Consensus 87 ~~~~~~~~~~~~S~~~~~~--------~~~~~g~-~~~~~gG~~~l~~~L~--~~l~I~l~~~V~~I~~~~~~v~V~~~~ 155 (383)
...-||.+|+++++...-. ...+... .+.+++|+..+.+.|. .+++|+||+....+.. .
T Consensus 7 T~KQWg~~p~eL~~~v~~RvPvr~~~d~~YF~d~yQgiP~~GYT~~fe~mL~h~~I~v~l~td~~~~~~----------~ 76 (204)
T PF03275_consen 7 TKKQWGVDPEELDASVIKRVPVRFSYDDRYFNDKYQGIPKDGYTKMFENMLDHPNIEVRLNTDFFDIIE----------F 76 (204)
T ss_dssp HHHHHTSSGGGSBCCCCSCS-BBSSS--BS--SSEEEEETTHHHHHHHHHC-STTEEEECS--GGGCHH----------H
T ss_pred CHHHcCCChHHCCHHHhcCCceeeCCCCccccChhhhCchhCHHHHHHHHhCCCceEEEcCCCHHHhhc----------c
Confidence 4566889999988854321 1122222 4578999999999998 4778888875554432 1
Q ss_pred CcEEEcCEEEEecChHHHh
Q 016772 156 GKTFVADAVVVAVPLGVLK 174 (383)
Q Consensus 156 G~~~~ad~VI~t~p~~~l~ 174 (383)
+....+|.||.|.|++.+-
T Consensus 77 ~~~~~~~~viyTG~iDe~F 95 (204)
T PF03275_consen 77 GGEPYADKVIYTGPIDEYF 95 (204)
T ss_dssp HCCCTEEEEEE-S-HHHHT
T ss_pred cccccCCeEEEeCCHHHHh
Confidence 1234579999999999864
No 143
>PRK14694 putative mercuric reductase; Provisional
Probab=79.45 E-value=4.8 Score=39.63 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=32.3
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|..+++.+.+.+.++ ++.+|.||+++..
T Consensus 232 GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 271 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGR 271 (468)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCC
Confidence 467999999999987766666766555 6999999998854
No 144
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=79.15 E-value=4.2 Score=40.53 Aligned_cols=44 Identities=36% Similarity=0.284 Sum_probs=34.8
Q ss_pred ccCCcccCceeEEEEecCCeeEEEECC---Cc--EEEcCEEEEecChHH
Q 016772 129 KGLDIRLGHRVTKITRHYIGVKVTVEG---GK--TFVADAVVVAVPLGV 172 (383)
Q Consensus 129 ~~l~I~l~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VI~t~p~~~ 172 (383)
.+++|+.+++|++|..+++++.|++.+ |+ ++.|+.||.|+-+..
T Consensus 168 ~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 168 RGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred cCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 367899999999998887777666543 53 689999999998754
No 145
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=79.12 E-value=1.6 Score=41.31 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=36.4
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p 169 (383)
++.|+-|+.|+++......+.+...||.+++.|.||+++-
T Consensus 407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG 446 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVG 446 (659)
T ss_pred CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEec
Confidence 5679999999999998888999999999999999999984
No 146
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=78.63 E-value=3.4 Score=38.84 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCcccCceeEEEEecCC-eeEEEECC---C--cEEEcCEEEEecC
Q 016772 131 LDIRLGHRVTKITRHYI-GVKVTVEG---G--KTFVADAVVVAVP 169 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~-~v~V~~~~---G--~~~~ad~VI~t~p 169 (383)
+.|+.+++|+++...++ ++.+++.+ | ..+++|+||+||-
T Consensus 294 ~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred eEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 46889999999999884 78877654 2 4689999999974
No 147
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=78.27 E-value=4.8 Score=42.50 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=36.2
Q ss_pred HHHHHc-cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 124 INTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 124 ~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
.+.|.+ +++|++++.|++|..++....|++.+|+.+.+|.||+++..
T Consensus 189 ~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 189 QRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 334433 67899999999997654445577889989999999999864
No 148
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=78.22 E-value=5.5 Score=38.75 Aligned_cols=41 Identities=32% Similarity=0.315 Sum_probs=29.8
Q ss_pred cCCcccCceeEEEEecC-Ce---eEEEECCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHY-IG---VKVTVEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~-~~---v~V~~~~G~--~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..++ ++ |.+.+.+|+ .+.+|.||+|+-.
T Consensus 144 gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 144 GIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred CCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 56899999999999864 33 334444554 4789999999753
No 149
>PRK12831 putative oxidoreductase; Provisional
Probab=77.84 E-value=2.4 Score=41.65 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=33.8
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
+++..+++|.+||.+.+ ...+..|+..|+.||..|.+.|..
T Consensus 422 ~~Ts~pgVfAaGD~~~g--~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 422 GLTSKEGVFAGGDAVTG--AATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CccCCCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHHHHhcC
Confidence 34557899999999875 458899999999999999887743
No 150
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=77.52 E-value=5.4 Score=39.21 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=37.9
Q ss_pred ccCChHHHHHHHHc-----cCCcccCceeEEEEecCCeeE-EEE--CCC--cEEEcCEEEEecC
Q 016772 116 MVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTV--EGG--KTFVADAVVVAVP 169 (383)
Q Consensus 116 ~~gG~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~--~~G--~~~~ad~VI~t~p 169 (383)
+.+|...+++.|.+ +++|+++++|++|..++++|. |.+ .+| ..+.|+.||+|+-
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCC
Confidence 34444556666654 467999999999998777654 443 233 3589999999985
No 151
>PRK06175 L-aspartate oxidase; Provisional
Probab=77.46 E-value=5.7 Score=38.65 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=33.6
Q ss_pred HHHHHHHc--cCCcccCceeEEEEecCCeeE-EE-ECCCc--EEEcCEEEEecCh
Q 016772 122 PVINTLAK--GLDIRLGHRVTKITRHYIGVK-VT-VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 122 ~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V~-~~~G~--~~~ad~VI~t~p~ 170 (383)
.|.+.+.+ +++|+++++|+.|..++++|. |. ..+|+ .+.|+.||+|+--
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 44444442 578999999999987666543 22 23443 5899999999854
No 152
>PRK13748 putative mercuric reductase; Provisional
Probab=77.14 E-value=5.8 Score=40.02 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=32.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|..+++.+.+.+.+| ++.+|.||+++..
T Consensus 324 gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 324 GIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC
Confidence 567999999999987777777777666 6999999999864
No 153
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.64 E-value=5.5 Score=39.63 Aligned_cols=44 Identities=25% Similarity=0.127 Sum_probs=35.3
Q ss_pred ccCCcccCceeEEEEecCCeeEEEECCC----cEEEcCEEEEecChHH
Q 016772 129 KGLDIRLGHRVTKITRHYIGVKVTVEGG----KTFVADAVVVAVPLGV 172 (383)
Q Consensus 129 ~~l~I~l~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VI~t~p~~~ 172 (383)
.+.+|+.+++|++|..+++.+.|++.++ .++.|+.||.|+-++.
T Consensus 168 ~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 168 RGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred CCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 3668999999999998877777766554 3589999999998754
No 154
>PRK06370 mercuric reductase; Validated
Probab=76.51 E-value=6.5 Score=38.59 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=31.1
Q ss_pred cCCcccCceeEEEEecCCeeEEEE--C-CCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTV--E-GGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~--~-~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..+++++.|.. . ++..+.+|.||+++..
T Consensus 226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 226 GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 567999999999988766654433 2 3457999999999864
No 155
>PRK08244 hypothetical protein; Provisional
Probab=76.10 E-value=6.3 Score=39.02 Aligned_cols=41 Identities=32% Similarity=0.379 Sum_probs=33.0
Q ss_pred cCCcccCceeEEEEecCCeeEEEEC--CC-cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVE--GG-KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~--~G-~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..++++|.|+.. +| ++++||.||.|--.
T Consensus 114 gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~ 157 (493)
T PRK08244 114 GVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGA 157 (493)
T ss_pred CCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCC
Confidence 5679999999999988888776543 56 47999999988744
No 156
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=75.87 E-value=7.5 Score=38.70 Aligned_cols=40 Identities=38% Similarity=0.405 Sum_probs=30.3
Q ss_pred cCCcccCceeEEEEecCCee---EEEECCC--cEEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRHYIGV---KVTVEGG--KTFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v---~V~~~~G--~~~~ad~VI~t~p 169 (383)
+++|+++++|++|..++++| .+...+| ..+.||.||+++-
T Consensus 204 gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 204 KIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred CCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 56899999999998776654 3434444 3589999999984
No 157
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=75.86 E-value=6.9 Score=38.71 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=32.2
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCC---cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|...++++.|+..+| +++.+|.||+++..
T Consensus 234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 567999999999987666666665554 37999999999864
No 158
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=75.27 E-value=6.1 Score=38.06 Aligned_cols=52 Identities=35% Similarity=0.416 Sum_probs=35.8
Q ss_pred ChHHHHHHHHcc-----CCcccCceeEEEEecCCeeE-EEE---CCCc--EEEcCEEEEecCh
Q 016772 119 GYLPVINTLAKG-----LDIRLGHRVTKITRHYIGVK-VTV---EGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 119 G~~~l~~~L~~~-----l~I~l~~~V~~I~~~~~~v~-V~~---~~G~--~~~ad~VI~t~p~ 170 (383)
+-..+++.|.+. ++|+++++|+++..++++|+ |.. .+|+ .+.|++||+|+--
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 456667767653 47999999999999888765 333 3564 5789999999843
No 159
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=74.93 E-value=6.9 Score=38.54 Aligned_cols=46 Identities=35% Similarity=0.416 Sum_probs=33.8
Q ss_pred HHHHccCCcccCceeEEEEecCCeeEEEECC--C--cEEEcCEEEEecCh
Q 016772 125 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEG--G--KTFVADAVVVAVPL 170 (383)
Q Consensus 125 ~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~--G--~~~~ad~VI~t~p~ 170 (383)
+.|.+.++|++++.|++|...++++.|++.+ | +++.+|.||+++..
T Consensus 223 ~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 223 KRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred HHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence 3343346789999999998777777666533 2 36999999999865
No 160
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=74.90 E-value=7.3 Score=38.22 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=31.5
Q ss_pred cCCcccCceeEEEEecCCeeEEEEC---CCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVE---GGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~---~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..+++++.+++. +++++.+|.||+++..
T Consensus 221 gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 221 GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 5689999999999877666555543 2357999999999754
No 161
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=74.35 E-value=5 Score=37.72 Aligned_cols=48 Identities=33% Similarity=0.452 Sum_probs=32.5
Q ss_pred HHHHHHHccC--CcccCceeEEEEecCCe----eEEEEC----CCcEEEcCEEEEecC
Q 016772 122 PVINTLAKGL--DIRLGHRVTKITRHYIG----VKVTVE----GGKTFVADAVVVAVP 169 (383)
Q Consensus 122 ~l~~~L~~~l--~I~l~~~V~~I~~~~~~----v~V~~~----~G~~~~ad~VI~t~p 169 (383)
.-.+-.++.+ .++++++|++|...+++ +.|++. +++++.|++||+++.
T Consensus 99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp HHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred HHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 3334445554 39999999999986643 778773 346899999999876
No 162
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=73.88 E-value=8.2 Score=39.17 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=30.4
Q ss_pred cCCcccCceeEEEEecCCeeE-E--EECCCc-EEEc-CEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-V--TVEGGK-TFVA-DAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V--~~~~G~-~~~a-d~VI~t~p~~ 171 (383)
+++|+++++|++|..++++|. | .+.++. .+.| +.||+|+-..
T Consensus 231 Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 231 GVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 568999999999887766643 3 333443 4788 9999998543
No 163
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=72.99 E-value=8.1 Score=38.01 Aligned_cols=41 Identities=41% Similarity=0.582 Sum_probs=31.1
Q ss_pred cCCcccCceeEEEEecCCeeEEEEC---C--CcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVE---G--GKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~---~--G~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|..+++++.++.. + ++.+.+|.||+++..
T Consensus 229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR 274 (466)
T ss_pred CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC
Confidence 5679999999999876666654432 2 357999999999864
No 164
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=72.94 E-value=8.2 Score=37.40 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=31.2
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
++++++++.|++|..++ .+ +...+|+++.+|.||++++.
T Consensus 193 gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 193 EINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGI 231 (427)
T ss_pred CCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCc
Confidence 57899999999997643 33 45567888999999999875
No 165
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=72.82 E-value=8.5 Score=38.90 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=35.2
Q ss_pred ccCChHHHHHHHHc-----cCCcccCceeEEEEecCCeeE-EE-ECCCc--EEEc-CEEEEecC
Q 016772 116 MVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VT-VEGGK--TFVA-DAVVVAVP 169 (383)
Q Consensus 116 ~~gG~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~-~~~G~--~~~a-d~VI~t~p 169 (383)
..+| ..|+++|.+ +++|+++++|+++..++++|. |. ..+|. .+.| +.||+|+-
T Consensus 213 ~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtG 275 (564)
T PRK12845 213 AAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAG 275 (564)
T ss_pred cCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecC
Confidence 3455 777777755 457999999999887655554 32 23443 3556 58999873
No 166
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=72.82 E-value=9.1 Score=37.26 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=29.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|..+++.+.+.+.++ ++.||.||+++..
T Consensus 205 gI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~ 244 (444)
T PRK09564 205 GVELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGV 244 (444)
T ss_pred CCEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCC
Confidence 578999999999975433334555544 7999999998874
No 167
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=72.58 E-value=7.9 Score=37.56 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.1
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|+++++|++|.. ++ |++.+|+++.||.||+++..
T Consensus 242 gV~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 242 GVDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccCC
Confidence 578999999999963 33 55678889999999998763
No 168
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=72.52 E-value=7.2 Score=36.81 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=30.1
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
++++++++.|++|.. + .|++.+|+++.+|.||+++..
T Consensus 205 gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 205 GIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred CCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCC
Confidence 578999999999853 3 366678889999999999874
No 169
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=72.21 E-value=8.2 Score=36.55 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=40.6
Q ss_pred ceeccCChHHHHHHHHc-----cCCcccCceeEEEEecCCe-eE-EEECCCcEEEcCEEEEecC
Q 016772 113 HGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VK-VTVEGGKTFVADAVVVAVP 169 (383)
Q Consensus 113 ~~~~~gG~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~-V~~~~G~~~~ad~VI~t~p 169 (383)
..++..|.+.|++.+++ +....||+++.+|....++ +. |+. .++...+..||+-.+
T Consensus 224 ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~-~~~v~~~k~vi~dpS 286 (440)
T KOG1439|consen 224 YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKS-GGEVAKCKKVICDPS 286 (440)
T ss_pred ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEec-CCceeecceEEecCc
Confidence 45788999999999987 3479999999999984444 33 333 344677777776543
No 170
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=72.16 E-value=10 Score=37.10 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=30.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCC-cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|+.+++.+.+...++ .++.+|.||+++..
T Consensus 225 GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 225 GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCC
Confidence 568999999999987666555554322 36899999999864
No 171
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=72.13 E-value=9.2 Score=40.67 Aligned_cols=48 Identities=10% Similarity=0.255 Sum_probs=36.1
Q ss_pred HHHHHHc-cCCcccCceeEEEEecCC--eeEEEECCCcEEEcCEEEEecCh
Q 016772 123 VINTLAK-GLDIRLGHRVTKITRHYI--GVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 123 l~~~L~~-~l~I~l~~~V~~I~~~~~--~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+.+.|.+ +++|++++.|++|..+++ ...|++.+|+.+.+|.||+++..
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 3444433 678999999999976432 34577789999999999999854
No 172
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=72.02 E-value=6.1 Score=37.91 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=33.2
Q ss_pred ccCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 129 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 129 ~~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.++++++++.|+.|+.++.. |++.+|+.+.+|++|+|+-..
T Consensus 71 ~~i~~~~g~~V~~id~~~~~--v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTRE--LVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred CCCEEEcCCEEEEEECCCCE--EEECCCCEEEcCEEEEccCCC
Confidence 46789999999999876544 556678889999999998654
No 173
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=70.87 E-value=7.3 Score=37.74 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=32.8
Q ss_pred cCCcccCceeEEEEecCCeeEEEECC-CcEEE--cCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEG-GKTFV--ADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~-G~~~~--ad~VI~t~p~ 170 (383)
++++++++.|++|+.+++.+.+...+ ++.+. +|+||+|+-.
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCC
Confidence 56788999999999887777776543 45677 9999999865
No 174
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=70.71 E-value=6.6 Score=40.37 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=34.8
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 357 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~ 357 (383)
+++..+++|.+||...+ ...+.-|+..|++||+.|...|.++
T Consensus 596 ~~Ts~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred cccCCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567899999999875 4578899999999999999887654
No 175
>PRK07538 hypothetical protein; Provisional
Probab=70.66 E-value=9 Score=36.90 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=31.3
Q ss_pred CcccCceeEEEEecCCeeEEEECCC-----cEEEcCEEEEecChHH
Q 016772 132 DIRLGHRVTKITRHYIGVKVTVEGG-----KTFVADAVVVAVPLGV 172 (383)
Q Consensus 132 ~I~l~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VI~t~p~~~ 172 (383)
.|+++++|++|..+++++.+.+.++ ++++||.||-|--..-
T Consensus 120 ~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 120 AVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred EEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence 4999999999998877766655432 4799999988875543
No 176
>PRK08071 L-aspartate oxidase; Provisional
Probab=70.43 E-value=7 Score=38.99 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=33.5
Q ss_pred HHHHHH----ccCCcccCceeEEEEecCCeeE-EEE--CCCc--EEEcCEEEEecCh
Q 016772 123 VINTLA----KGLDIRLGHRVTKITRHYIGVK-VTV--EGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 123 l~~~L~----~~l~I~l~~~V~~I~~~~~~v~-V~~--~~G~--~~~ad~VI~t~p~ 170 (383)
+.++|. .+++|+.+++|++|..++++|. |.+ .+|+ .+.|++||+|+--
T Consensus 132 i~~~L~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 132 LLEHLLQELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 444443 4678999999999987666544 333 3443 5789999999844
No 177
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=70.27 E-value=6.8 Score=35.69 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=32.7
Q ss_pred HHHHHHc-cCCcccCceeEEEEec--CCe---eEEEECCCc----EEEcCEEEEecC
Q 016772 123 VINTLAK-GLDIRLGHRVTKITRH--YIG---VKVTVEGGK----TFVADAVVVAVP 169 (383)
Q Consensus 123 l~~~L~~-~l~I~l~~~V~~I~~~--~~~---v~V~~~~G~----~~~ad~VI~t~p 169 (383)
|..++.+ +++|+.++.|++|..+ +++ |.+...++. .+.++.||++.-
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAG 255 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAG 255 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SH
T ss_pred cchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccC
Confidence 5566655 6789999999999664 444 445555554 467899999874
No 178
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=70.24 E-value=8.5 Score=35.43 Aligned_cols=38 Identities=34% Similarity=0.422 Sum_probs=29.5
Q ss_pred CcccCceeEEEEecCCeeE-EE--ECCCc--EEEcCEEEEecC
Q 016772 132 DIRLGHRVTKITRHYIGVK-VT--VEGGK--TFVADAVVVAVP 169 (383)
Q Consensus 132 ~I~l~~~V~~I~~~~~~v~-V~--~~~G~--~~~ad~VI~t~p 169 (383)
+|.+|++|+.|..++++|. |. ..+|+ .+.+|+||+++-
T Consensus 161 ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatG 203 (477)
T KOG2404|consen 161 KILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATG 203 (477)
T ss_pred hhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecC
Confidence 6999999999998888764 43 34553 578999998874
No 179
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=69.91 E-value=12 Score=37.63 Aligned_cols=43 Identities=33% Similarity=0.200 Sum_probs=33.0
Q ss_pred cCCcccCceeEEEEecCCeeE-EEE---CCC--cEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTV---EGG--KTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~---~~G--~~~~ad~VI~t~p~~~ 172 (383)
+++|+.+++|++|..++++|. |++ .+| ..+.||.||.|+-+..
T Consensus 163 Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 163 GAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 668999999999998877653 443 233 3689999999998764
No 180
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=69.69 E-value=12 Score=36.77 Aligned_cols=42 Identities=36% Similarity=0.414 Sum_probs=31.0
Q ss_pred cCCcccCceeEEEEe-cCCeeE-EEECCC--cEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITR-HYIGVK-VTVEGG--KTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~-~~~~v~-V~~~~G--~~~~ad~VI~t~p~~ 171 (383)
+++|++++.|++|.. +++++. +.+.+| +.+.+|.||+++...
T Consensus 235 gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 235 GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 568999999999985 234444 444566 368999999998754
No 181
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=69.57 E-value=1.3e+02 Score=30.20 Aligned_cols=48 Identities=31% Similarity=0.217 Sum_probs=35.3
Q ss_pred HHHHccCCcccCceeEEEEecCCeeEEEECC---Cc--EEEcCEEEEecChHH
Q 016772 125 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEG---GK--TFVADAVVVAVPLGV 172 (383)
Q Consensus 125 ~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VI~t~p~~~ 172 (383)
++-..+.+|...++|+++..+++-+-|.+.| |+ .++|+.||.|+-+++
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred HHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 3334466899999999999998832344432 43 489999999998876
No 182
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=69.44 E-value=5.2 Score=41.24 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=33.4
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
+++..+++|.+||.+.+ ...+..|+..|+.||+.|.+.|.
T Consensus 613 ~~Ts~~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 613 YQTSNPKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cccCCCCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhC
Confidence 35667899999999865 45789999999999999988764
No 183
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=69.02 E-value=11 Score=37.59 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=32.9
Q ss_pred cCCcccCceeEEEEecCCeeE-EEE---CCC--cEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTV---EGG--KTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~---~~G--~~~~ad~VI~t~p~~~ 172 (383)
+++|+.+++|++|..+++++. |++ .+| ..+.|+.||.|+-+..
T Consensus 142 Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 142 GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 568999999999998877643 443 234 3689999999997754
No 184
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=69.00 E-value=7 Score=38.51 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=33.1
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
+++..+++|.+||.+.+ ...+..|+..|+.||..|.+.|.
T Consensus 426 ~~Ts~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 426 YQTSNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccCCCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHh
Confidence 44567899999999875 34788999999999999988774
No 185
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=68.80 E-value=6.4 Score=37.47 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=29.4
Q ss_pred hCCCCCEEEeccccCCC-C-Cc-hhhHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMS-Y-PG-SVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~-~-~g-~v~gA~~SG~~aA~~i~~~ 353 (383)
..-+++||||||-..-. . +| .++-|+.||..|++.+..-
T Consensus 333 Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~ 374 (376)
T TIGR03862 333 LKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSW 374 (376)
T ss_pred cccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 44578999999986541 1 22 6899999999999887653
No 186
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=68.72 E-value=8.5 Score=35.68 Aligned_cols=42 Identities=45% Similarity=0.548 Sum_probs=31.0
Q ss_pred cCCcccCceeEEEEecCCeeEEEEC---CCc--EEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVE---GGK--TFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~---~G~--~~~ad~VI~t~p~~ 171 (383)
+++|+++++|+.+..+++++.++.. +|+ +++||.||-|--..
T Consensus 125 gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~ 171 (356)
T PF01494_consen 125 GVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAH 171 (356)
T ss_dssp TEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT
T ss_pred hhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcc
Confidence 4579999999999998888765432 342 68999999886543
No 187
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=68.30 E-value=5.9 Score=38.79 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=31.0
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 353 (383)
+++..+++|.+||.+.+ ...+.-|+..|+.||..|.+.
T Consensus 411 ~~Ts~~~VfA~GD~~~g--~~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILG--AATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CccCCCCEEEecCCCCC--cHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999865 457889999999999998754
No 188
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=68.17 E-value=9.2 Score=36.68 Aligned_cols=42 Identities=40% Similarity=0.593 Sum_probs=31.4
Q ss_pred HHHHc-cCCcccCceeEEEEecCCeeEEEECCCc-EEEcCEEEEecCh
Q 016772 125 NTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPL 170 (383)
Q Consensus 125 ~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VI~t~p~ 170 (383)
+.|.+ +++|+++++|++|+. ++ |++.+|+ .+.|+.||.|+-.
T Consensus 217 ~~L~~~GV~v~l~~~Vt~v~~--~~--v~~~~g~~~I~~~tvvWaaGv 260 (405)
T COG1252 217 RALEKLGVEVLLGTPVTEVTP--DG--VTLKDGEEEIPADTVVWAAGV 260 (405)
T ss_pred HHHHHCCCEEEcCCceEEECC--Cc--EEEccCCeeEecCEEEEcCCC
Confidence 34443 678999999999974 44 4555666 5999999999854
No 189
>PLN02697 lycopene epsilon cyclase
Probab=68.03 E-value=13 Score=37.24 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=33.1
Q ss_pred cCCcccCceeEEEEecCCeeE-EEECCCcEEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
++++ ++++|++|..+++++. +++.+|.++.||.||.|.-..-
T Consensus 206 GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 206 GVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred CCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 4456 7889999998777765 4567788899999999987654
No 190
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=68.01 E-value=14 Score=36.27 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=30.0
Q ss_pred cCCcccCceeEEEEecCC-eeEEEECCC--cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYI-GVKVTVEGG--KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~-~v~V~~~~G--~~~~ad~VI~t~p~ 170 (383)
.++|+++++|++|+.+++ ++.++..+| +++.+|.||+++..
T Consensus 223 ~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 223 EFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred ccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 367889999999987654 455543333 46999999998754
No 191
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=67.92 E-value=9.3 Score=37.19 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=33.3
Q ss_pred cCCcccCceeEEEEecCCeeEEEEC-CCcEEE--cCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVE-GGKTFV--ADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~-~G~~~~--ad~VI~t~p~~ 171 (383)
++++++++.|++|+.+++.|.+... +|+.++ +|++|+|+-..
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 5678899999999988888777642 355666 99999999753
No 192
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=67.81 E-value=7.4 Score=41.10 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=33.2
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++++++|+.|+.+.. .|++.+|+.+.+|++|+|+-..
T Consensus 68 gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCC
Confidence 678999999999987654 4667788889999999999753
No 193
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=66.42 E-value=12 Score=36.69 Aligned_cols=39 Identities=36% Similarity=0.310 Sum_probs=31.7
Q ss_pred CcccCceeEEEEecCC--eeEEEECCCcE--EEcCEEEEecCh
Q 016772 132 DIRLGHRVTKITRHYI--GVKVTVEGGKT--FVADAVVVAVPL 170 (383)
Q Consensus 132 ~I~l~~~V~~I~~~~~--~v~V~~~~G~~--~~ad~VI~t~p~ 170 (383)
.|++++.|+.+.++.+ .+.|++.+|.. ++||.||+|+-.
T Consensus 100 ~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 100 QIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred EEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 5899999999887654 58899988765 459999999865
No 194
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=66.23 E-value=15 Score=37.27 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=31.3
Q ss_pred hCCCCCEEEeccccCCC----C---CchhhHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMS----Y---PGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~----~---~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
.+|+++||-||+.+... | +.++-.|+.+|+.|++.+.+.+.
T Consensus 521 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 521 GTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred CCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Confidence 46899999999876432 2 22577799999999999877653
No 195
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=66.07 E-value=9.5 Score=36.64 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=30.5
Q ss_pred CCEEEeccccCC---CCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 319 DNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 319 ~~l~faG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
+|+.++||+-+. -.++++.-|+.||..||+.+.+.+.
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 689999999554 3457999999999999999987653
No 196
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=66.02 E-value=5.6 Score=34.57 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=29.9
Q ss_pred CCCCCEEEeccccCCC-----CCchhhHHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMS-----YPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~-----~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
+-.+|||+||-+++.. .+...-|-+.||++||+.|++.|.
T Consensus 216 eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 216 EVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 3358999999886532 223556668999999999998875
No 197
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=65.17 E-value=15 Score=37.25 Aligned_cols=42 Identities=26% Similarity=0.470 Sum_probs=31.0
Q ss_pred hCCCCCEEEeccccCCC----CC--c-hhhHHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMS----YP--G-SVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~----~~--g-~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
-+|+++||-||+.+... |. | ++-.|+.+|+.|++.+.+.+..
T Consensus 526 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~ 574 (578)
T PRK12843 526 GQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTLA 574 (578)
T ss_pred CCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhhc
Confidence 46899999999876432 21 2 4566899999999998776543
No 198
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=65.16 E-value=8.3 Score=37.80 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=32.8
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
.+..+++|.+||...+ ...+..|+..|+.||+.|.+.|..
T Consensus 414 ~Ts~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 414 RTSLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred ccCCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456799999998854 347888999999999999888754
No 199
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=65.15 E-value=14 Score=36.01 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=32.6
Q ss_pred HHHHHHc-cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 123 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 123 l~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+.+.|.+ +++++++++|++|+. . .|++.+|+.+.+|.||+++..
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC
Confidence 3444443 578999999999963 2 355667888999999999865
No 200
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=65.10 E-value=8.9 Score=36.08 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=31.6
Q ss_pred CCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
+..+++|.+||.+.. ...+..|+..|..||+.|.+.|.
T Consensus 313 t~~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 313 TSREGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred cCCCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHHh
Confidence 446799999998874 35788999999999999988774
No 201
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=65.01 E-value=77 Score=30.40 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=28.4
Q ss_pred CEEEeccccCC---CCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 320 NLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 320 ~l~faG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
|+.++||+.|+ .++.++..|++-+...|+.+-+...
T Consensus 289 ~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 289 NVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred eEEEecccccccCCcccccccchHHHHHHHHHHHHHhcc
Confidence 89999999886 3445888899998888887666544
No 202
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=64.78 E-value=16 Score=37.08 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=33.1
Q ss_pred cCCcccCceeEEEEecCCeeE-EEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~t~p~~ 171 (383)
++.| +.+.|+.|..++++|. |.+.+|..+.|+.||+|+-..
T Consensus 115 nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 115 NLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 3555 5678999888777765 888899899999999999763
No 203
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=64.55 E-value=13 Score=36.81 Aligned_cols=49 Identities=24% Similarity=0.144 Sum_probs=33.9
Q ss_pred HHHHHHc--cCCcccCceeEEEEecCCeeE-EEECC-C--cEEEcCEEEEecChH
Q 016772 123 VINTLAK--GLDIRLGHRVTKITRHYIGVK-VTVEG-G--KTFVADAVVVAVPLG 171 (383)
Q Consensus 123 l~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V~~~~-G--~~~~ad~VI~t~p~~ 171 (383)
|.+.+.+ +++|+.++.|++|..++++|. |.+.+ + ..+.|+.||+|+--.
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 4444433 468999999999987766654 43322 3 368999999998654
No 204
>PLN02661 Putative thiazole synthesis
Probab=64.32 E-value=8 Score=36.36 Aligned_cols=41 Identities=12% Similarity=-0.009 Sum_probs=31.2
Q ss_pred CCCCCEEEeccccCCC-----CCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMS-----YPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~-----~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
+=+++||.+|-+.... .+...-|-+.||++||+.|++.|..
T Consensus 284 ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 284 EVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred cccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 3368999999886532 2235666788999999999999864
No 205
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=64.03 E-value=15 Score=33.82 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=31.7
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
+++.++++|-|||-+...+. -+-.|.-.|-.||..+.+.|.
T Consensus 261 ~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 261 METSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred cccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhh
Confidence 56778999999999988533 566777788888887776654
No 206
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=63.92 E-value=16 Score=34.65 Aligned_cols=40 Identities=35% Similarity=0.581 Sum_probs=31.0
Q ss_pred cCCcccCceeEEEEecCC-eeEEEEC---CC--cEEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRHYI-GVKVTVE---GG--KTFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~-~v~V~~~---~G--~~~~ad~VI~t~p 169 (383)
+++++|++.|..++.+++ .|.|... +| ++++||.+.+++-
T Consensus 266 gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc
Confidence 568999999999999888 4555433 23 4689999988874
No 207
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=63.59 E-value=13 Score=40.37 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=34.6
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
+++.++++|.+||.+.+ ..++..|+..|+.||..|.+.|..
T Consensus 716 ~~Ts~pgVFAaGDv~~G--~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTG--GATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcCCC--ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667899999999865 458899999999999999988753
No 208
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=63.40 E-value=9.5 Score=34.21 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=29.4
Q ss_pred CCCEEEeccccCCC-----CCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 318 VDNLFFAGEATSMS-----YPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 318 ~~~l~faG~~~~~~-----~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
+++||.||-+.... .+...-|-+.||++||+.|++.|..
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 57999999875532 2235566788999999999998753
No 209
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=63.31 E-value=6.8 Score=35.54 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 353 (383)
+..+++|.+||.+... ...+..|+..|+.||..|.+.
T Consensus 263 t~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 263 TSVPGVFAAGDVRDKG-YRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred cCCCCEEEeecccCcc-hhhhhhhhhhHHHHHHHHHhh
Confidence 4467999999998731 347888999999999988753
No 210
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=63.15 E-value=17 Score=37.33 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=30.8
Q ss_pred cCCcccCceeEEEEecCCeeE-EEE---CCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTV---EGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~---~~G~--~~~ad~VI~t~p~ 170 (383)
+++|++++.|+.+..++++|. |.. .+|+ .+.|++||+|+--
T Consensus 184 gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 184 TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 578999999999987766654 333 2453 5899999999854
No 211
>PTZ00058 glutathione reductase; Provisional
Probab=62.59 E-value=20 Score=36.24 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=30.7
Q ss_pred cCCcccCceeEEEEecCC-eeEEEECC-CcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYI-GVKVTVEG-GKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~-~v~V~~~~-G~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|..+++ ++.+...+ ++++.+|.||+++..
T Consensus 292 GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 567999999999986543 46555434 457999999999753
No 212
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=62.41 E-value=14 Score=35.21 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=33.0
Q ss_pred HHHHHHHccC--CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 122 PVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~~l--~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.+-+.+.+.+ .|+++++|++| +.++|++ .+|++++||.||-+.+..
T Consensus 90 ~f~~~l~~~l~~~i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 90 RFHEGLLQAFPEGVILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHHhhcccEEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCC
Confidence 3444444432 38889999999 3455555 678899999999999865
No 213
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.29 E-value=18 Score=35.31 Aligned_cols=51 Identities=25% Similarity=0.204 Sum_probs=38.2
Q ss_pred HHHHHHH---HccC----CcccCceeEEEEecC-CeeEEEECCC----cEEEcCEEEEecChH
Q 016772 121 LPVINTL---AKGL----DIRLGHRVTKITRHY-IGVKVTVEGG----KTFVADAVVVAVPLG 171 (383)
Q Consensus 121 ~~l~~~L---~~~l----~I~l~~~V~~I~~~~-~~v~V~~~~G----~~~~ad~VI~t~p~~ 171 (383)
..+.+.| ++.. .|++++.|..+...+ ++|.|++.++ +...+|.||+|+--.
T Consensus 90 ~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 90 REVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred HHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 3444444 5544 399999999999888 6899887544 468899999998665
No 214
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=61.63 E-value=13 Score=36.72 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=31.7
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
+++..+++|.+||...+ ...+..|+..|+.||+.|.+.|
T Consensus 427 ~~T~~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 427 YQTTNPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred ccCCCCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHHHh
Confidence 34556799999999875 3477889999999999988765
No 215
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=61.51 E-value=20 Score=36.16 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=28.9
Q ss_pred hCCCCCEEEeccccCC----CCC--c-hhhHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~----~~~--g-~v~gA~~SG~~aA~~i~~ 352 (383)
.+|+++||-||+.+.. .|. | ++-.|+.+|+.|++.+.+
T Consensus 511 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 511 GSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 4689999999999743 122 2 566789999999998754
No 216
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=61.21 E-value=21 Score=35.99 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=28.5
Q ss_pred hCCCCCEEEeccccC----C--CC----CchhhHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATS----M--SY----PGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 315 ~~p~~~l~faG~~~~----~--~~----~g~v~gA~~SG~~aA~~i~~ 352 (383)
-+|+++||-||+... . .+ +.++-.|+.+|+.|++.+.+
T Consensus 501 g~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 501 GTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 468999999999974 1 11 33567789999999998653
No 217
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=61.14 E-value=12 Score=36.35 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=32.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECC-Cc--EEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEG-GK--TFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~-G~--~~~ad~VI~t~p~~ 171 (383)
+++++++++|++|+.+++.|.+.+.+ ++ ++.+|++|+|+-..
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 67788999999999988888776643 22 36899999998653
No 218
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=60.98 E-value=12 Score=35.44 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=30.6
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++++++|++|+.++.. |++ +|..+.+|++|+|+-..
T Consensus 72 gv~~~~~~~V~~id~~~~~--v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQV--VKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred CCEEECCCEEEEEECCCCE--EEE-CCeEEeCCEEEECCCCC
Confidence 5678899999999876553 444 56689999999999753
No 219
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=60.88 E-value=12 Score=37.91 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=33.1
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
.+.++++|.+||.+.+ +.++..|+..|++||..|.+.|.
T Consensus 406 ~ts~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 406 MTGRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred cCCCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHc
Confidence 4556899999999874 46889999999999999988875
No 220
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=60.52 E-value=12 Score=37.11 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=33.0
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
+++..+++|.+||.+.+ ...+..|+..|+.||..|.+.|..
T Consensus 440 ~~Ts~~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred ceECCCCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567899999998765 347788999999999999887753
No 221
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=60.03 E-value=12 Score=33.44 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=28.2
Q ss_pred CCCEEEeccccCCC-----CCchhhHHHHHHHHHHHHHHHHH
Q 016772 318 VDNLFFAGEATSMS-----YPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 318 ~~~l~faG~~~~~~-----~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
+++||.||-+.... .+...-|-+.||++||+.|++.|
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 57999999886532 22355667889999999999876
No 222
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.83 E-value=23 Score=35.98 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=34.4
Q ss_pred HHHHHHHc-----cCCcccCceeEEEEecCCeeE-E---EECCCc--EEEcCEEEEecCh
Q 016772 122 PVINTLAK-----GLDIRLGHRVTKITRHYIGVK-V---TVEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 122 ~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V---~~~~G~--~~~ad~VI~t~p~ 170 (383)
.|.+.|.+ +++|..++.|+++..++++|. | ...+|+ .+.|++||+|+--
T Consensus 136 ~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 136 AILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 45555544 467999999999987666543 2 234564 5899999999855
No 223
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=59.81 E-value=59 Score=32.05 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=21.4
Q ss_pred CCEEEeccccCCCCC--chhhHHHHHHHHHH
Q 016772 319 DNLFFAGEATSMSYP--GSVHGAFSTGLMAA 347 (383)
Q Consensus 319 ~~l~faG~~~~~~~~--g~v~gA~~SG~~aA 347 (383)
.||-|.|..+....- =+++-++++|+.|+
T Consensus 469 ~NlafiGQFvE~p~D~vfT~EYSVRtA~~AV 499 (500)
T PF06100_consen 469 TNLAFIGQFVEIPRDTVFTVEYSVRTAQEAV 499 (500)
T ss_pred ceeEEEEcccccCCCEEEEEeehhhhhhhhc
Confidence 589999988765211 27888888888775
No 224
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=59.19 E-value=11 Score=39.56 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=32.7
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
++..+++|.+||...+ ...+..|+..|+.||..|.+.|.
T Consensus 712 ~Ts~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 712 QSSIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556799999999875 45889999999999999988764
No 225
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=58.85 E-value=25 Score=35.54 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=31.1
Q ss_pred cCCcccCceeEEEEecCCeeE-EE---ECCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~---~~~G~--~~~ad~VI~t~p~ 170 (383)
+++|+.+++|++|..++++|. |. ..+|+ .+.|+.||+|+--
T Consensus 143 gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 143 GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 568999999999987776653 32 24564 5899999999864
No 226
>PRK07512 L-aspartate oxidase; Provisional
Probab=58.75 E-value=16 Score=36.55 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=29.4
Q ss_pred cCCcccCceeEEEEecCCeeE-EEEC-CCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTVE-GGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~~-~G~--~~~ad~VI~t~p~ 170 (383)
+++|+.+++|+.|..++++|. |... ++. .+.|+.||+|+--
T Consensus 151 gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 151 SITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGG 195 (513)
T ss_pred CCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCC
Confidence 468999999999877666543 3322 232 5899999999854
No 227
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=58.58 E-value=14 Score=39.42 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=32.7
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++++++|++|+.+.. .|++.+|+.+.+|++|+|+-..
T Consensus 73 gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 73 GIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCC
Confidence 678999999999987643 4667788889999999999653
No 228
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=58.22 E-value=13 Score=37.56 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=34.2
Q ss_pred HHHHHHHc-----cCCcccCceeEEEEecCCeeE-EE---ECCCc--EEEcCEEEEecCh
Q 016772 122 PVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 122 ~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~---~~~G~--~~~ad~VI~t~p~ 170 (383)
.|++.|.+ +++|..+++|+++..++++|. |. ..+|+ .+.|++||+|+--
T Consensus 120 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG 179 (565)
T TIGR01816 120 AILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGG 179 (565)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence 45555543 467999999999987666654 32 23564 5789999999854
No 229
>PRK07121 hypothetical protein; Validated
Probab=57.82 E-value=28 Score=34.49 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=28.8
Q ss_pred hCCCCCEEEeccccCCCC------CchhhHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSY------PGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~------~g~v~gA~~SG~~aA~~i~~ 352 (383)
-+|+++||-||+.+...+ +.++-.|+.+|+.|++.+.+
T Consensus 446 g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 446 GAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred CCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 468999999999754321 23677799999999998754
No 230
>PRK10262 thioredoxin reductase; Provisional
Probab=57.67 E-value=18 Score=33.36 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=28.5
Q ss_pred cCCcccCceeEEEEecCCeeE-EEECC------CcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTVEG------GKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~~~------G~~~~ad~VI~t~p~ 170 (383)
++++++++.|++|..+++++. |++.+ .+++.+|.||+++..
T Consensus 199 gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 199 NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred CeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 456889999999986654432 33322 136999999998864
No 231
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=57.63 E-value=13 Score=40.08 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=32.7
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
.+..+++|.+||...+ ...+.-|+..|+.||+.|...|.
T Consensus 589 ~Ts~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 589 RTSIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred ccCCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556799999999876 45899999999999999987654
No 232
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=57.53 E-value=9.7 Score=32.15 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=35.8
Q ss_pred HHHHHH-HccCCcccCceeEEEEecCCe-----eEE---EECCCcEEEcCEEEEecChH
Q 016772 122 PVINTL-AKGLDIRLGHRVTKITRHYIG-----VKV---TVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L-~~~l~I~l~~~V~~I~~~~~~-----v~V---~~~~G~~~~ad~VI~t~p~~ 171 (383)
.+.+.+ ..++++++++.|.+|...... +.+ .+.++.++.+|+||+|+-..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 455555 345678899999999987774 233 23456689999999999843
No 233
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=57.45 E-value=15 Score=35.97 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=30.3
Q ss_pred CCCEEEeccccCC---CCCchhhHHHHHHHHHHHHHHHHH
Q 016772 318 VDNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 318 ~~~l~faG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
.+|+.++||+.+. -.++++.-|+.||..||+.+.+.+
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 3589999998553 345699999999999999998765
No 234
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=57.04 E-value=24 Score=35.77 Aligned_cols=41 Identities=17% Similarity=0.061 Sum_probs=30.4
Q ss_pred cCCcccCceeEEEEecCCeeE-EEE---CCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTV---EGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~---~~G~--~~~ad~VI~t~p~ 170 (383)
+++|.++++|+++..++++|. |.. .+|+ .+.|++||+|+--
T Consensus 150 gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 150 NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 467999999999998777654 432 2343 5789999999854
No 235
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=56.90 E-value=17 Score=34.65 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=30.3
Q ss_pred CCEEEeccccCC---CCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 319 DNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 319 ~~l~faG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
++++++||+-+. ..++++.-|+.||..+|+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 579999999664 3446899999999999999987653
No 236
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=56.64 E-value=16 Score=37.79 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=33.8
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
+.+..+++|.+||...+ ...+..|+..|+.||..|.+.|..
T Consensus 462 ~~Ts~pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 462 LQTSVAGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CcCCCCCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567899999999865 457889999999999999888763
No 237
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=56.61 E-value=10 Score=38.39 Aligned_cols=50 Identities=28% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHHHHHHc-----cCCcccCceeEEEEecCCeeE-EEE--CCCc-EEEcC-EEEEecCh
Q 016772 121 LPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTV--EGGK-TFVAD-AVVVAVPL 170 (383)
Q Consensus 121 ~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~--~~G~-~~~ad-~VI~t~p~ 170 (383)
..|++.|.+ +++|+++++|++|..++++|. |.. .+++ .+.++ .||+|+--
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg 273 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGG 273 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCC
Confidence 445555543 568999999999998877654 433 3443 46785 78888753
No 238
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.43 E-value=16 Score=37.29 Aligned_cols=40 Identities=28% Similarity=0.228 Sum_probs=30.2
Q ss_pred hCCCCCEEEeccccCCCCCc-------hhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 354 (383)
.+++++||-|||.+..+..| ++-.|+..|++|++.+.+.+
T Consensus 382 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 382 DAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred CCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 36899999999986521112 67788999999999877654
No 239
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=56.28 E-value=12 Score=35.30 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=30.2
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++.+ +|++|+.+++. |.+.+|+++.+|++|+|+-..
T Consensus 68 gv~~~~~-~v~~id~~~~~--V~~~~g~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 68 GARFVIA-EATGIDPDRRK--VLLANRPPLSYDVLSLDVGST 106 (364)
T ss_pred CCEEEEE-EEEEEecccCE--EEECCCCcccccEEEEccCCC
Confidence 5666664 89999887664 666788889999999998654
No 240
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=56.23 E-value=26 Score=34.92 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=29.2
Q ss_pred cCCcccCceeEEEEecCCeeE-EE-ECCCc--EEEcC-EEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VT-VEGGK--TFVAD-AVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~-~~~G~--~~~ad-~VI~t~p~ 170 (383)
+++|+++++|+++..++++|. |. ..+|+ .+.|+ .||+|+--
T Consensus 188 gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG 233 (513)
T PRK12837 188 NARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGG 233 (513)
T ss_pred CCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCC
Confidence 568999999999988766654 32 23443 47886 79988844
No 241
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=55.89 E-value=25 Score=35.12 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=32.8
Q ss_pred HHHHH--ccCCcccCceeEEEEecCCeeE-EEECC---C--cEEEcCEEEEecCh
Q 016772 124 INTLA--KGLDIRLGHRVTKITRHYIGVK-VTVEG---G--KTFVADAVVVAVPL 170 (383)
Q Consensus 124 ~~~L~--~~l~I~l~~~V~~I~~~~~~v~-V~~~~---G--~~~~ad~VI~t~p~ 170 (383)
.+.|. ++++|++++.|++|..+++++. |++.+ | +.+.||.||+++-.
T Consensus 394 ~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 394 QDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred HHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 44444 2678999999999987655543 54432 2 46899999998754
No 242
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=55.72 E-value=27 Score=35.32 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=30.4
Q ss_pred hCCCCCEEEeccccCCC----C---CchhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMS----Y---PGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~----~---~g~v~gA~~SG~~aA~~i~~~l 354 (383)
.+|+++||-||+.+... | +.++-.|+.+|+.|++.+.+.+
T Consensus 504 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~ 550 (557)
T PRK12844 504 GSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGAR 550 (557)
T ss_pred CCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhcc
Confidence 46899999999876432 2 2367789999999999886653
No 243
>PRK08401 L-aspartate oxidase; Provisional
Probab=55.07 E-value=27 Score=34.36 Aligned_cols=48 Identities=23% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHc-----cCCcccCceeEEEEecCCeeE-EEECCCcEEEcCEEEEecChH
Q 016772 122 PVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~-----~l~I~l~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.+.+.|.+ ++++..+ .|+.+..++++|. |.+ +|+.+.|+.||+|+--.
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGF 174 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcC
Confidence 45555543 4567665 7888876666664 444 56689999999998553
No 244
>PLN02546 glutathione reductase
Probab=55.07 E-value=31 Score=34.84 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=30.4
Q ss_pred cCCcccCceeEEEEecCC-eeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYI-GVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++|++++.|++|...++ .+.|.+.+++...+|.||+++..
T Consensus 307 GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~ 348 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGR 348 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecc
Confidence 567999999999986433 45566666654558999998864
No 245
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=54.94 E-value=32 Score=34.83 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=29.5
Q ss_pred CCCCCEEEeccccCCCCCc-------hhhHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 354 (383)
+++++||-|||.+..+..| ++-.|+.+|++|++.+.+..
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~ 396 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYA 396 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999986422122 67788999999999876553
No 246
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=54.31 E-value=43 Score=29.93 Aligned_cols=42 Identities=26% Similarity=0.198 Sum_probs=30.4
Q ss_pred cCCcccCceeEEEEecCC--eeE-EEEC-----------CCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYI--GVK-VTVE-----------GGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~--~v~-V~~~-----------~G~~~~ad~VI~t~p~~ 171 (383)
+++|+.++.|+.|..+++ +|. |.+. +...++|+.||.|+...
T Consensus 114 GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 114 GAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred CCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 567999999999988766 333 3332 22468999999999743
No 247
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=53.06 E-value=2.8e+02 Score=28.60 Aligned_cols=43 Identities=21% Similarity=0.084 Sum_probs=31.1
Q ss_pred cCCcccCceeEEEEec--CCeeE-EEE---CCCc--EEEcCEEEEecChHH
Q 016772 130 GLDIRLGHRVTKITRH--YIGVK-VTV---EGGK--TFVADAVVVAVPLGV 172 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~--~~~v~-V~~---~~G~--~~~ad~VI~t~p~~~ 172 (383)
+.+|+.+++|++|..+ ++++. |+. .+|+ .+.||.||+|+-+..
T Consensus 246 Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 246 GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 5579999999999876 34433 332 2343 579999999998764
No 248
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=52.74 E-value=21 Score=35.96 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=32.7
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYG 359 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~~~ 359 (383)
++..+++|.+||.+... ...+..|+..|..||..|...|.+...
T Consensus 270 ~Ts~p~IyAaGDv~~~~-~~~v~~A~~~G~~Aa~~i~~~l~~~~~ 313 (555)
T TIGR03143 270 ETNVPGVYAAGDLRPKE-LRQVVTAVADGAIAATSAERYVKELKE 313 (555)
T ss_pred ccCCCCEEEceeccCCC-cchheeHHhhHHHHHHHHHHHHHhhhh
Confidence 34567999999987542 235678999999999999877754333
No 249
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.66 E-value=32 Score=34.95 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=34.3
Q ss_pred HHHHHHHc--cCCcccCceeEEEEecCCeeE-E---EECCCc--EEEcCEEEEecChH
Q 016772 122 PVINTLAK--GLDIRLGHRVTKITRHYIGVK-V---TVEGGK--TFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V---~~~~G~--~~~ad~VI~t~p~~ 171 (383)
.|.+.+.+ +++|+.++.|+++..++++|. | ...+|+ .+.|+.||+|+--.
T Consensus 142 ~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 142 TLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 34444433 567999999999987666543 2 224564 57999999998553
No 250
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=52.60 E-value=32 Score=34.96 Aligned_cols=41 Identities=24% Similarity=0.121 Sum_probs=30.5
Q ss_pred cCCcccCceeEEEEecCCeeE----EEECCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK----VTVEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~----V~~~~G~--~~~ad~VI~t~p~ 170 (383)
+++|..++.|+++..++++|. +...+|+ .+.|+.||+|+--
T Consensus 148 ~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 148 QIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred CcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 457889999999988766654 2334663 6899999999854
No 251
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=52.59 E-value=20 Score=36.79 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=29.6
Q ss_pred CCCCCEEEeccccCC-CCC------chhhHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 316 ~p~~~l~faG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l 354 (383)
+++++||-|||.+.. .++ .++-.|+..|++|++.+.+.+
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 679999999998642 222 167788999999999876653
No 252
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.09 E-value=22 Score=36.16 Aligned_cols=40 Identities=25% Similarity=0.195 Sum_probs=29.9
Q ss_pred hCCCCCEEEeccccCCCCCc-------hhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l 354 (383)
.+++++||-|||.+..+..| ++-.|+..|++|++.+.+.+
T Consensus 372 ~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 372 TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 36799999999986522112 67778999999999876654
No 253
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=51.38 E-value=21 Score=34.63 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=34.5
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
++++++++.|++++..... |.+.+|+.+.+++.|+|+-..
T Consensus 141 gIe~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATGSS 180 (478)
T ss_pred CceEEEcceeEEeeccccE--EEeCCCceeecceEEEeecCc
Confidence 5689999999999987765 678899999999999998763
No 254
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=50.93 E-value=26 Score=34.10 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=34.5
Q ss_pred cCCcccCceeEEEEecCC-ee-EEEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYI-GV-KVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~-~v-~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
++++.+++.+.++.-+.+ +| .|...+|.++.||-||+-+-..
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence 457999999999987663 44 4889999999999999988654
No 255
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=50.69 E-value=18 Score=36.75 Aligned_cols=41 Identities=29% Similarity=0.269 Sum_probs=28.8
Q ss_pred cCCcccCceeEEEEecCCeeE-EEE-CCCc--EEEc-CEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTV-EGGK--TFVA-DAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~-~~G~--~~~a-d~VI~t~p~ 170 (383)
+++|+++++|+++..++++|. |.. .+|+ .+.| +.||+|+-.
T Consensus 235 Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 235 GVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred CCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCC
Confidence 568999999999887666654 433 3443 4676 689998743
No 256
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=49.89 E-value=18 Score=36.52 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=28.8
Q ss_pred cCCcccCceeEEEEecCCeeE-EEE-CCCc--EEEcC-EEEEecC
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTV-EGGK--TFVAD-AVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~-~~G~--~~~ad-~VI~t~p 169 (383)
+++|+++++|++|..++++|. |.. .+|+ .+.|+ .||+|+-
T Consensus 222 gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtG 266 (557)
T PRK12844 222 GVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASG 266 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecC
Confidence 568999999999998776654 333 3453 46784 7999874
No 257
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=49.89 E-value=38 Score=30.30 Aligned_cols=41 Identities=29% Similarity=0.179 Sum_probs=29.1
Q ss_pred cCCcccCceeEEEEecCC-eeE-EEEC-----------CCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYI-GVK-VTVE-----------GGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~-~v~-V~~~-----------~G~~~~ad~VI~t~p~ 170 (383)
+++|++++.|+.|..+++ ++. |.+. +...++|+.||.|+-.
T Consensus 118 Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 118 GAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred CCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 567999999999987665 432 2221 2246899999999854
No 258
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.87 E-value=26 Score=35.51 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=30.4
Q ss_pred CC-CCCEEEeccccCCCCCc-------hhhHHHHHHHHHHHHHHHHHH
Q 016772 316 IP-VDNLFFAGEATSMSYPG-------SVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 316 ~p-~~~l~faG~~~~~~~~g-------~v~gA~~SG~~aA~~i~~~l~ 355 (383)
++ +++||-|||....+..| ++-+|+..|++|++.+.+.+.
T Consensus 357 t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 357 NPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred cCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 66 99999999986522222 678899999999998876553
No 259
>PRK12839 hypothetical protein; Provisional
Probab=49.60 E-value=44 Score=33.89 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=29.5
Q ss_pred hCCCCCEEEeccccCC----CC---CchhhHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM----SY---PGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~----~~---~g~v~gA~~SG~~aA~~i~~~ 353 (383)
-+||++||-||+.+.. .| +.++-.|+.+|+.|++.+.+.
T Consensus 522 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 522 DTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred CCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 4689999999997543 22 236778999999999987643
No 260
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.50 E-value=42 Score=34.12 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=29.6
Q ss_pred cCCcccCceeEEEEecC----CeeE-EE---ECCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHY----IGVK-VT---VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~----~~v~-V~---~~~G~--~~~ad~VI~t~p~ 170 (383)
+++|..++.|++|..++ ++|. |. ..+|+ .+.|++||+|+--
T Consensus 154 gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 204 (583)
T PRK08205 154 GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGG 204 (583)
T ss_pred CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCC
Confidence 46799999999998665 4443 32 24564 5789999999854
No 261
>PRK08275 putative oxidoreductase; Provisional
Probab=49.38 E-value=42 Score=33.87 Aligned_cols=40 Identities=30% Similarity=0.441 Sum_probs=30.6
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
.++.+++||-|||..... .-.+-+|+..|++|++.+.+.+
T Consensus 365 ~~t~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 365 AETTVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CccCCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHH
Confidence 357799999999976532 2367778899999999876654
No 262
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=49.35 E-value=42 Score=34.31 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=29.2
Q ss_pred hCCCCCEEEeccccCCCCC------chhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYP------GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~------g~v~gA~~SG~~aA~~i~~~l 354 (383)
++.+++||.|||.....++ .++-.|+..|++|++.+.+..
T Consensus 380 ~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 380 MTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred cccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999997533221 366778889999998876643
No 263
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=49.23 E-value=20 Score=38.69 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=31.5
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
++..+++|.+||.... ++++..|+..|+.||+.|+..+
T Consensus 804 qTs~pgVFAaGD~a~G--p~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 804 ETSLTNVYMIGDVQRG--PSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred ccCCCCEEEEeccccC--chHHHHHHHHHHHHHHHHhhhc
Confidence 4556799999998764 4688999999999999998654
No 264
>PRK13984 putative oxidoreductase; Provisional
Probab=49.13 E-value=23 Score=36.13 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=30.8
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
+++.++++|.+||.+.. . .+-.|+..|+.||+.|.+.|.
T Consensus 564 ~~Ts~~gVfAaGD~~~~--~-~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHG--P-DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CccCCCCEEEecCcCCc--h-HHHHHHHHHHHHHHHHHHHhc
Confidence 34567899999999875 2 345689999999999987763
No 265
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.12 E-value=34 Score=34.39 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=30.0
Q ss_pred hCCCCCEEEeccccCCCC------CchhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSY------PGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~------~g~v~gA~~SG~~aA~~i~~~l 354 (383)
++|+++||-|||.+...+ +.++-.|+.+|++|++.+.+.+
T Consensus 358 ~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 358 ETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred cccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 378999999999754322 1256678999999999987654
No 266
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=49.11 E-value=23 Score=34.43 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=28.7
Q ss_pred hCCCCCEEEeccccCC-----CC--CchhhHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM-----SY--PGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~-----~~--~g~v~gA~~SG~~aA~~i~~~ 353 (383)
.+|+++||-||+.+.. .| +.++-.|+..|+.|++.+.+.
T Consensus 384 g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 384 AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 4689999999986532 11 235677899999999987653
No 267
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=48.79 E-value=19 Score=38.88 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=30.6
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~ 353 (383)
.+..+++|.+||...+ ++++..|+..|+.||..|+..
T Consensus 802 ~Ts~pgVFAaGD~a~G--P~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 802 ETNITNVFVIGDANRG--PATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred ccCCCCEEEEeCcCCC--ccHHHHHHHHHHHHHHHHhcc
Confidence 3456799999998764 468999999999999999754
No 268
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=48.77 E-value=22 Score=36.48 Aligned_cols=40 Identities=28% Similarity=0.160 Sum_probs=29.6
Q ss_pred hCCCCCEEEeccccCCC-CC------chhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~-~~------g~v~gA~~SG~~aA~~i~~~l 354 (383)
.+++++||-|||....+ ++ .++-.|+..|++|++.+.+..
T Consensus 399 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 399 DKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 35799999999986421 21 267778999999999876543
No 269
>PRK07804 L-aspartate oxidase; Provisional
Probab=48.77 E-value=36 Score=34.21 Aligned_cols=49 Identities=27% Similarity=0.190 Sum_probs=32.8
Q ss_pred HHHHHHHc-----cCCcccCceeEEEEecCC-e---eEEE-----ECCC-cEEEcCEEEEecCh
Q 016772 122 PVINTLAK-----GLDIRLGHRVTKITRHYI-G---VKVT-----VEGG-KTFVADAVVVAVPL 170 (383)
Q Consensus 122 ~l~~~L~~-----~l~I~l~~~V~~I~~~~~-~---v~V~-----~~~G-~~~~ad~VI~t~p~ 170 (383)
.|.+.|.+ +++|+.++.|++|..+++ + +.+. ..+| ..+.|+.||+|+--
T Consensus 145 ~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 145 EVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 45555543 467999999999987654 3 3333 1233 35899999999854
No 270
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=48.53 E-value=46 Score=33.85 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=30.2
Q ss_pred hCCCCCEEEeccccCC----CCC--c-hhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~----~~~--g-~v~gA~~SG~~aA~~i~~~l 354 (383)
-+|+++||-||+.... .|. | ++-.|+.+|+.|++.+.+.+
T Consensus 524 g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 524 DSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred CCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 4689999999988543 122 2 46778999999999987654
No 271
>PRK12839 hypothetical protein; Provisional
Probab=48.45 E-value=20 Score=36.33 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=27.6
Q ss_pred cCCcccCceeEEEEec-CCeeE---EEECCCc--EEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRH-YIGVK---VTVEGGK--TFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~-~~~v~---V~~~~G~--~~~ad~VI~t~p 169 (383)
+++|+++++|++|..+ +++|. +...+|+ ...++.||+|+-
T Consensus 228 Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtG 273 (572)
T PRK12839 228 GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATG 273 (572)
T ss_pred CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCC
Confidence 5689999999999765 44443 3444554 234589999884
No 272
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=48.30 E-value=39 Score=34.74 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCcccCceeEEEEecCCeeE-EE---ECCCc--EEEcCEEEEecCh
Q 016772 131 LDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~~v~-V~---~~~G~--~~~ad~VI~t~p~ 170 (383)
++|..+++|+++..++++|. |. ..+|+ .+.|++||+|+--
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 78999999999987666543 22 23564 5799999999864
No 273
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=48.05 E-value=24 Score=35.84 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=29.2
Q ss_pred CCCCCEEEeccccCC-CCC------chhhHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 316 ~p~~~l~faG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l 354 (383)
+|+++||-|||.+.. .++ .++-.|+.+|++|++.+.+.+
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 579999999998652 121 256778999999999876654
No 274
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=47.98 E-value=43 Score=34.59 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=30.8
Q ss_pred cCCcccCceeEEEEecCCee---EEEE-CCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGV---KVTV-EGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v---~V~~-~~G~--~~~ad~VI~t~p~ 170 (383)
+++|+.+++|++|..++++| .+.+ .+|+ .+.|++||+|+--
T Consensus 172 gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 172 GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 56899999999998876663 3433 4664 4689999999854
No 275
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=47.90 E-value=44 Score=34.55 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=30.2
Q ss_pred ccCCcccCceeEEEEecCCe--eEEEECC-------C--------cEEEcCEEEEecCh
Q 016772 129 KGLDIRLGHRVTKITRHYIG--VKVTVEG-------G--------KTFVADAVVVAVPL 170 (383)
Q Consensus 129 ~~l~I~l~~~V~~I~~~~~~--v~V~~~~-------G--------~~~~ad~VI~t~p~ 170 (383)
++++|++++.|++|...+++ +.|.+.+ | +++.+|.||+++-.
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr 425 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR 425 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc
Confidence 35789999999999876543 5554321 1 26999999999854
No 276
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=47.82 E-value=24 Score=35.82 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=28.4
Q ss_pred cCCcccCceeEEEEecC-CeeE-EEE-CCCc--EEEcC-EEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHY-IGVK-VTV-EGGK--TFVAD-AVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~-~~v~-V~~-~~G~--~~~ad-~VI~t~p~ 170 (383)
+++|+++++|++|..++ ++|+ |.. .+|+ .+.|+ .||+|+--
T Consensus 227 gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGG 273 (584)
T PRK12835 227 GVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGG 273 (584)
T ss_pred CceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCc
Confidence 56899999999999864 4453 332 3443 47787 69998743
No 277
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=47.81 E-value=39 Score=32.25 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=27.4
Q ss_pred CCEEEeccccCC---CCCchhhHHHHHHHHHHHHHHH
Q 016772 319 DNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 319 ~~l~faG~~~~~---~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++.++||+.|. ..+.+++.|++.+...|+.+..
T Consensus 279 grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~ 315 (390)
T TIGR02360 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLE 315 (390)
T ss_pred CCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHH
Confidence 689999999775 2334899999999999987754
No 278
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=47.75 E-value=18 Score=36.68 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=29.7
Q ss_pred hCCCCCEEEeccccCC----CC---CchhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM----SY---PGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~----~~---~g~v~gA~~SG~~aA~~i~~~l 354 (383)
-+||++||-||+.+.. .| +.++-.|+.+|+.|++.+.+.+
T Consensus 525 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 525 GQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred CCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 4689999999986432 12 2267779999999999887643
No 279
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=47.65 E-value=21 Score=35.51 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=30.0
Q ss_pred hCCCCCEEEeccccCCCC------CchhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSY------PGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~------~g~v~gA~~SG~~aA~~i~~~l 354 (383)
-+|+++||-||+.+...+ +.++-.|+.+|+.|++.+.+..
T Consensus 458 g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 458 GSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred CCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 368999999999754322 2356778999999999887653
No 280
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=47.53 E-value=47 Score=33.99 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=32.6
Q ss_pred HHhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 313 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 313 ~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
..++.+++||-|||.......+...+++..|+.+++.+.+.+..
T Consensus 390 ~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 390 NRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34677899999999875433346778888899999888766543
No 281
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=47.34 E-value=19 Score=34.71 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=24.6
Q ss_pred CCCCCEEEeccccCCC--CCc-hhhHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMS--YPG-SVHGAFSTGLMAAE 348 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~--~~g-~v~gA~~SG~~aA~ 348 (383)
..++|||||||-..-. -+| .++-|+.||..|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 4478999999987642 112 58999999999986
No 282
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=47.28 E-value=24 Score=35.36 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=29.7
Q ss_pred cCCcccCceeEEEEecCCeeE-EEEC-CCc---EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTVE-GGK---TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~~-~G~---~~~ad~VI~t~p~ 170 (383)
+++|+.++.|++|..++++++ |.+. +|. ...++.||++.-.
T Consensus 208 nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 208 NLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGA 253 (532)
T ss_pred CeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence 478999999999998876543 4443 222 3589999998744
No 283
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.03 E-value=28 Score=35.39 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCCCEEEeccccCC-CCC------chhhHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 316 ~p~~~l~faG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l 354 (383)
+++++||-|||.+.. .++ .++-.|+..|++|++.+.+.+
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 689999999997642 111 256778999999999876654
No 284
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.95 E-value=48 Score=33.87 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=33.9
Q ss_pred HHHHHHHc-----cCCcccCceeEEEEecC-CeeE-EE---ECCCc--EEEcCEEEEecCh
Q 016772 122 PVINTLAK-----GLDIRLGHRVTKITRHY-IGVK-VT---VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 122 ~l~~~L~~-----~l~I~l~~~V~~I~~~~-~~v~-V~---~~~G~--~~~ad~VI~t~p~ 170 (383)
.|++.|.+ +++|..+++|+++..++ ++|. |. ..+|+ .+.|++||+|+--
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 35555543 56899999999998765 4443 32 24664 5789999999854
No 285
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=46.42 E-value=25 Score=34.07 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=32.1
Q ss_pred CCCCCEEEeccccCCC---CCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~---~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
+..+++|.+||..... .+....-|+..|..+|+.|.+.+..
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 3568999999998742 2346778999999999999888743
No 286
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=45.99 E-value=26 Score=34.39 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCCCCEEEeccccCC-C----C--CchhhHHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSM-S----Y--PGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 316 ~p~~~l~faG~~~~~-~----~--~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
+|+++||-||+.+.. . + +.++-.|+.+|+.|++.+.+...
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 589999999997543 1 1 23567789999999998876543
No 287
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.68 E-value=30 Score=35.23 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=30.2
Q ss_pred hCCCCCEEEeccccCCCCC------chhhHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYP------GSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~------g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
.+++++||-|||.+...++ .++-.|+..|++|++.+.+.+.
T Consensus 365 ~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 365 MTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred CeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999998643221 2566788899999998776543
No 288
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=45.64 E-value=23 Score=33.73 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=28.6
Q ss_pred hCCCCCEEEeccccCC-CCCc--hhhHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM-SYPG--SVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~-~~~g--~v~gA~~SG~~aA~~i~~~ 353 (383)
.+-+++||||||-..- .|-| .+.-|+.||..|++.+.+.
T Consensus 365 sk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~ 406 (408)
T COG2081 365 SKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAW 406 (408)
T ss_pred hhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhh
Confidence 3457899999987553 1222 5778999999999887654
No 289
>PRK07121 hypothetical protein; Validated
Probab=45.44 E-value=25 Score=34.86 Aligned_cols=51 Identities=29% Similarity=0.303 Sum_probs=34.1
Q ss_pred hHHHHHHHHc-----cCCcccCceeEEEEecC-CeeE-EEE-CCCc--EEEc-CEEEEecCh
Q 016772 120 YLPVINTLAK-----GLDIRLGHRVTKITRHY-IGVK-VTV-EGGK--TFVA-DAVVVAVPL 170 (383)
Q Consensus 120 ~~~l~~~L~~-----~l~I~l~~~V~~I~~~~-~~v~-V~~-~~G~--~~~a-d~VI~t~p~ 170 (383)
-..+.+.|.+ +++|+++++|++|..++ ++|. |.. .+|+ .+.| +.||+|+--
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 3456666544 46799999999998764 3443 333 2332 4788 999999853
No 290
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=45.02 E-value=46 Score=32.80 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=30.9
Q ss_pred HccCCcccCceeEEEEecCCeeE-EEE-----CCC---------cEEEcCEEEEecCh
Q 016772 128 AKGLDIRLGHRVTKITRHYIGVK-VTV-----EGG---------KTFVADAVVVAVPL 170 (383)
Q Consensus 128 ~~~l~I~l~~~V~~I~~~~~~v~-V~~-----~~G---------~~~~ad~VI~t~p~ 170 (383)
.+++++++++.+++|..++++|+ |+. .+| +++.||.||+++..
T Consensus 341 ~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 45789999999999976556553 322 122 46899999999863
No 291
>PRK10262 thioredoxin reductase; Provisional
Probab=44.91 E-value=17 Score=33.65 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=32.5
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
+++.++++|.|||.+...+ ..+-.|+-.|..||..|.+.+..
T Consensus 275 ~~t~~~~VyA~GD~~~~~~-~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIY-RQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred cccCCCCEEECeeccCCCc-ceEEEEehhHHHHHHHHHHHHHh
Confidence 4566789999999986532 35556899999999998887754
No 292
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=44.84 E-value=31 Score=34.87 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCCCEEEeccccCC-CCC------chhhHHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 316 ~p~~~l~faG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
+++++||-|||.... .++ .++-.|+.+|++|++.+.+.+.
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 789999999997642 121 2677889999999999876553
No 293
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.83 E-value=18 Score=37.14 Aligned_cols=39 Identities=26% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCCCEEEeccccCCCCC------chhhHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMSYP------GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~~~------g~v~gA~~SG~~aA~~i~~~l 354 (383)
+++++||-|||.+...++ .++-.|+..|++|++.+.+.+
T Consensus 403 t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~ 447 (626)
T PRK07803 403 ATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYV 447 (626)
T ss_pred eecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHh
Confidence 679999999997543211 267788999999999877654
No 294
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=44.61 E-value=27 Score=35.98 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=33.0
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
+++++.+.+|+.|...+.. |+++.|..+.+|.+|+|+-.
T Consensus 73 ~i~L~~~~~v~~idr~~k~--V~t~~g~~~~YDkLilATGS 111 (793)
T COG1251 73 GITLYTGEKVIQIDRANKV--VTTDAGRTVSYDKLIIATGS 111 (793)
T ss_pred CcEEEcCCeeEEeccCcce--EEccCCcEeecceeEEecCc
Confidence 5679999999999876654 77889999999999998854
No 295
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.56 E-value=31 Score=34.65 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=30.4
Q ss_pred cCCcccCceeEEEEecCCe-eE-EE--E-CCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIG-VK-VT--V-EGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~-v~-V~--~-~~G~--~~~ad~VI~t~p~ 170 (383)
+++|+++++|+++..++++ |. |. . .+|+ .+.|+.||+|+--
T Consensus 148 gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 148 RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 4689999999999876654 43 32 2 4564 5899999999854
No 296
>PRK06116 glutathione reductase; Validated
Probab=44.55 E-value=27 Score=34.09 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=29.7
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++.++++|.+||.+.. ....+-|+..|+.||+.|+.
T Consensus 291 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGR--VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcCCCCEEEEeecCCC--cCcHHHHHHHHHHHHHHHhC
Confidence 34567899999998854 34788999999999998863
No 297
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.12 E-value=34 Score=34.66 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHHHc-----cCCcccCceeEEEEec-CCeeE-EE---ECCCc--EEEcCEEEEecCh
Q 016772 121 LPVINTLAK-----GLDIRLGHRVTKITRH-YIGVK-VT---VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 121 ~~l~~~L~~-----~l~I~l~~~V~~I~~~-~~~v~-V~---~~~G~--~~~ad~VI~t~p~ 170 (383)
..|.+.|.+ +++|..+++++++..+ +++|. |. ..+|+ .+.|++||+|+--
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 345555543 5679999999999875 45543 32 24564 4789999999854
No 298
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=43.89 E-value=49 Score=31.36 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=33.5
Q ss_pred cCCcccCceeEEEEecCCeeE---EEECCCcEEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITRHYIGVK---VTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~---V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+++++++..|.+|....+.+. +...++..+.+|.++++++..
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 356899999999998776543 566778889999999998653
No 299
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=43.77 E-value=34 Score=34.79 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=30.2
Q ss_pred hCCCCCEEEeccccCC-CCC------chhhHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
++++++||-|||.+.. .++ .++-.|+..|++|++.+.+.+.
T Consensus 368 ~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 368 ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred ccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 4789999999997542 111 2567788999999998876543
No 300
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=43.76 E-value=29 Score=33.94 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=29.6
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~ 351 (383)
+++.++++|.+||.+.. ....+-|+..|+.+|+.|+
T Consensus 291 ~~T~~p~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGK--VELTPVAIAAGRKLSERLF 326 (450)
T ss_pred CcCCCCCEEEEEecCCC--cccHHHHHHHHHHHHHHHh
Confidence 34557899999998865 3578899999999999886
No 301
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=43.25 E-value=46 Score=33.44 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=29.4
Q ss_pred cCCcccCceeEEEEecCC---eeE---EEEC-CCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYI---GVK---VTVE-GGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~---~v~---V~~~-~G~--~~~ad~VI~t~p~ 170 (383)
.++|++++.|++|..+++ +|+ +.+. +|+ ++.|+.||+|+-.
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAaga 277 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGA 277 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCc
Confidence 368999999999998643 343 3332 353 4899999999853
No 302
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=43.15 E-value=64 Score=32.91 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCcccCceeEEEEec-CCee-EEEECCCcEEEcCEEEEecChH
Q 016772 131 LDIRLGHRVTKITRH-YIGV-KVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 131 l~I~l~~~V~~I~~~-~~~v-~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+.++ ...|+.+..+ ++++ .|.+.+|..+.||.||+|+-..
T Consensus 112 V~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 112 LSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF 153 (617)
T ss_pred cEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence 3454 4577777655 4454 4888889889999999999775
No 303
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=43.15 E-value=25 Score=35.50 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=28.6
Q ss_pred cCCcccCceeEEEEecCCeeE-EEE-CCCc--EEEcC-EEEEecC
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTV-EGGK--TFVAD-AVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~-~~G~--~~~ad-~VI~t~p 169 (383)
+++|+++++|++|..++++|. |.. .+|+ .+.|+ .||+|+.
T Consensus 222 gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtG 266 (557)
T PRK07843 222 GVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASG 266 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccC
Confidence 568999999999988766654 333 2443 47786 6999764
No 304
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=43.13 E-value=24 Score=35.07 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=27.9
Q ss_pred cCceeEEEEecCCe-eE-EEECCCcEEEcCEEEEecChH
Q 016772 135 LGHRVTKITRHYIG-VK-VTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 135 l~~~V~~I~~~~~~-v~-V~~~~G~~~~ad~VI~t~p~~ 171 (383)
+...|+.+..+++. |. |.|.+|..+.|++||+|+-.-
T Consensus 119 ~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 119 LQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred hHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 44556666665553 54 889999999999999998654
No 305
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.97 E-value=55 Score=31.35 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=31.4
Q ss_pred CcccCceeEEEEecCCe-eEEEEC---CC--cEEEcCEEEEecChH
Q 016772 132 DIRLGHRVTKITRHYIG-VKVTVE---GG--KTFVADAVVVAVPLG 171 (383)
Q Consensus 132 ~I~l~~~V~~I~~~~~~-v~V~~~---~G--~~~~ad~VI~t~p~~ 171 (383)
.++-++.|++++..++| +.+++. .| ++++.|+||+|+--.
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 58889999999998877 766543 22 578999999999765
No 306
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=42.84 E-value=58 Score=33.10 Aligned_cols=41 Identities=27% Similarity=0.097 Sum_probs=30.2
Q ss_pred cCCcccCceeEEEEecCCeeE-E---EECCC--cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-V---TVEGG--KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V---~~~~G--~~~~ad~VI~t~p~ 170 (383)
++.+..++.|+.+..++++|. | ...+| ..+.|+.||+|+--
T Consensus 147 ~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 147 QIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred CCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 356888999999988776654 2 23466 35889999999844
No 307
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=42.78 E-value=50 Score=36.71 Aligned_cols=43 Identities=26% Similarity=0.272 Sum_probs=31.9
Q ss_pred hCCCCCEEEeccccCCCC------CchhhHHHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSY------PGSVHGAFSTGLMAAEDCRMRVLER 357 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~------~g~v~gA~~SG~~aA~~i~~~l~~~ 357 (383)
.+|+++||-||+.+...+ +.++-.|+..|+.|++.+.+.+.++
T Consensus 857 ~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~ 905 (1167)
T PTZ00306 857 RRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKK 905 (1167)
T ss_pred CceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 368999999999754321 2245668999999999998877543
No 308
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=42.74 E-value=8.1 Score=37.53 Aligned_cols=56 Identities=30% Similarity=0.440 Sum_probs=0.0
Q ss_pred hHHHHHHHHc--cCCcccCceeEEEEecCCeeE-EEEC--CC-cEEEcCEEEEecChHHHhc
Q 016772 120 YLPVINTLAK--GLDIRLGHRVTKITRHYIGVK-VTVE--GG-KTFVADAVVVAVPLGVLKA 175 (383)
Q Consensus 120 ~~~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V~~~--~G-~~~~ad~VI~t~p~~~l~~ 175 (383)
+..+.+.+.+ +++|++++.|..+..++++|. |++. +| .++.||.||=|+--..|..
T Consensus 92 ~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~ 153 (428)
T PF12831_consen 92 FKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAA 153 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344444443 678999999999999887654 4443 34 5699999999987655543
No 309
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=42.65 E-value=36 Score=34.72 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=56.4
Q ss_pred hhhcCCCCCccChhccc------cccccCCCceeccCC---hHHHHHHHHc-----cCCcccCceeEEEEecCCe-eEEE
Q 016772 88 EGWFAADAETISLKSWD------KEELLPGGHGLMVRG---YLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVT 152 (383)
Q Consensus 88 ~~~~~~~~~~~S~~~~~------~~~~~~g~~~~~~gG---~~~l~~~L~~-----~l~I~l~~~V~~I~~~~~~-v~V~ 152 (383)
..++|....-+|-.... .-....++.+.+.+| -..+..+|+. +..|.-|++|++|....++ +.|.
T Consensus 145 g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVe 224 (856)
T KOG2844|consen 145 GKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVE 224 (856)
T ss_pred hhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCcccee
Confidence 44567666666654322 112234555556666 2445666654 3469999999999987666 4598
Q ss_pred ECCCcEEEcCEEEEecChHH
Q 016772 153 VEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 153 ~~~G~~~~ad~VI~t~p~~~ 172 (383)
|..| .+++.+||-++-.+.
T Consensus 225 T~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 225 TPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred ccCc-ceecceEEechhHHH
Confidence 9889 689999999987765
No 310
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.03 E-value=38 Score=34.40 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=29.9
Q ss_pred hCCCCCEEEeccccCC-CC------CchhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM-SY------PGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~-~~------~g~v~gA~~SG~~aA~~i~~~l 354 (383)
.+++++||-|||.+.. .+ +.++-.|+.+|++|++.+.+..
T Consensus 367 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 367 DGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 3579999999998652 12 1257788999999999876544
No 311
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=41.80 E-value=31 Score=33.67 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=30.4
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++.++++|.+||.+.. ....+-|...|+.+|+.|+.
T Consensus 289 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTDR--INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccCCC--ccchhHHHHHHHHHHHHHhc
Confidence 45567899999999875 35788999999999998864
No 312
>PRK13984 putative oxidoreductase; Provisional
Probab=41.74 E-value=53 Score=33.52 Aligned_cols=50 Identities=28% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHHHccCCcccCceeEEEEecCCeeE-EEE--------CCC-----------cEEEcCEEEEecCh
Q 016772 121 LPVINTLAKGLDIRLGHRVTKITRHYIGVK-VTV--------EGG-----------KTFVADAVVVAVPL 170 (383)
Q Consensus 121 ~~l~~~L~~~l~I~l~~~V~~I~~~~~~v~-V~~--------~~G-----------~~~~ad~VI~t~p~ 170 (383)
..+.+++.++++|++++.+++|..++++++ |++ .+| .++.+|.||+++-.
T Consensus 467 ~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~ 536 (604)
T PRK13984 467 EEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQ 536 (604)
T ss_pred HHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCC
Confidence 344555667888999988888865555543 221 112 36899999998754
No 313
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=41.56 E-value=23 Score=35.35 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=33.6
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 357 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~~ 357 (383)
+++.++++|.|||.++..+ ..+.-|+..|..||..+.+.|.+.
T Consensus 472 l~Ts~p~IyAaGDv~~~~~-k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 472 GATSVPGVFAAGDCTTVPY-KQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred CCCCCCCEEECccccCCCC-CEEEEhhhhHHHHHHHHHHHHhhc
Confidence 3456789999999987643 357888999999999988877543
No 314
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=41.50 E-value=27 Score=35.35 Aligned_cols=37 Identities=27% Similarity=0.565 Sum_probs=28.4
Q ss_pred hCCCCCEEEeccccCC----CCC--c-hhhHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~----~~~--g-~v~gA~~SG~~aA~~i~ 351 (383)
-+|+++||-||+.+.. .|. | ++-.|+.+|+.|++.+.
T Consensus 519 g~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 519 GSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred CCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 4689999999988643 222 2 67789999999999875
No 315
>PRK09077 L-aspartate oxidase; Provisional
Probab=41.37 E-value=35 Score=34.24 Aligned_cols=39 Identities=31% Similarity=0.311 Sum_probs=29.4
Q ss_pred hCCCCCEEEeccccC-CCC------CchhhHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATS-MSY------PGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 315 ~~p~~~l~faG~~~~-~~~------~g~v~gA~~SG~~aA~~i~~~ 353 (383)
++++++||-|||... ..+ +.++-.|+..|++|++.+.+.
T Consensus 363 ~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 363 RTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred ccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 368999999999863 222 136777888999999988764
No 316
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=41.27 E-value=30 Score=34.90 Aligned_cols=39 Identities=31% Similarity=0.314 Sum_probs=28.7
Q ss_pred cCCcccCceeEEEEecCCeeE-EEE---CC--------------C-cEEEcCEEEEec
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTV---EG--------------G-KTFVADAVVVAV 168 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~---~~--------------G-~~~~ad~VI~t~ 168 (383)
+++|+++++++++..++++|. |.. .+ + ..+.|+.||+|+
T Consensus 166 gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILAT 223 (549)
T PRK12834 166 LVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTS 223 (549)
T ss_pred CceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeC
Confidence 378999999999987766654 432 11 2 257899999998
No 317
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.91 E-value=71 Score=32.37 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=28.9
Q ss_pred CCCCCEEEeccccCC-CCC------chhhHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 316 ~p~~~l~faG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l 354 (383)
+++++||-|||.... .++ .++-.|+..|++|++.+.+.+
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 479999999997642 111 256778999999999876554
No 318
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=40.36 E-value=66 Score=33.23 Aligned_cols=50 Identities=28% Similarity=0.369 Sum_probs=34.7
Q ss_pred HHHHHHHHccCCcccCceeEEEEecCCeeEEEE---C---------------CCc--EEEcCEEEEecCh
Q 016772 121 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTV---E---------------GGK--TFVADAVVVAVPL 170 (383)
Q Consensus 121 ~~l~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~---~---------------~G~--~~~ad~VI~t~p~ 170 (383)
..+-+++.++++|++++.+++|..+++++.++. . +|+ .+.+|.||+++..
T Consensus 366 ~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 366 AEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred HHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 345566677889999999999987666543321 1 122 5899999999874
No 319
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=40.10 E-value=58 Score=31.96 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=34.1
Q ss_pred ChHHHHHHHH--ccCCcccCceeEEEEecCCe-e-EEEECCCcEEEcCEEEEecChHH
Q 016772 119 GYLPVINTLA--KGLDIRLGHRVTKITRHYIG-V-KVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 119 G~~~l~~~L~--~~l~I~l~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
-+..+....+ .+++++.+ .|+.|..++++ + .|++.+|++++||.||=|+-...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 3555544443 36777766 47777776655 4 48899999999999998887643
No 320
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=40.00 E-value=74 Score=32.65 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=29.3
Q ss_pred cCCcccCceeEEEEe-cCCeeE-EE---ECCCc--EEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITR-HYIGVK-VT---VEGGK--TFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~-~~~~v~-V~---~~~G~--~~~ad~VI~t~p 169 (383)
+++|..+++|+++.. ++++|. |. ..+|+ .+.|++||+|+-
T Consensus 180 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 180 DCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred CCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 568999999999887 455543 32 24564 578999999993
No 321
>PRK06175 L-aspartate oxidase; Provisional
Probab=39.94 E-value=36 Score=33.15 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=29.2
Q ss_pred CCCCCEEEeccccC-CCC------CchhhHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATS-MSY------PGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 316 ~p~~~l~faG~~~~-~~~------~g~v~gA~~SG~~aA~~i~~~l 354 (383)
+|+++||-|||.+. ..+ +.++-.|+..|++|++.+...+
T Consensus 342 t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 342 TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999864 211 1356778899999999886543
No 322
>PRK14727 putative mercuric reductase; Provisional
Probab=39.08 E-value=33 Score=33.87 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=30.3
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++.++++|-+||.+.. +..++-|+..|+.||+.|+.
T Consensus 309 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 309 METSAPDIYAAGDCSDL--PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred eecCCCCEEEeeecCCc--chhhhHHHHHHHHHHHHHcC
Confidence 45667899999999865 35788999999999998863
No 323
>PRK07395 L-aspartate oxidase; Provisional
Probab=38.61 E-value=47 Score=33.51 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=29.3
Q ss_pred cCCcccCceeEEEEecC--CeeE-EE-ECCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHY--IGVK-VT-VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~--~~v~-V~-~~~G~--~~~ad~VI~t~p~ 170 (383)
+++|+++++|+++..++ ++|. |. ..+|. .+.|+.||+|+--
T Consensus 149 gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 149 NIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred CcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 56899999999998763 4443 32 23554 3789999999865
No 324
>PRK07512 L-aspartate oxidase; Provisional
Probab=38.49 E-value=46 Score=33.23 Aligned_cols=40 Identities=30% Similarity=0.199 Sum_probs=28.6
Q ss_pred hCCCCCEEEeccccCC-CCC------chhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l 354 (383)
++++++||-|||.... .++ .++-.|+..|++|++.+.+..
T Consensus 351 ~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 351 RSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred ccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999998632 111 145667889999999876653
No 325
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=38.41 E-value=26 Score=34.93 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=28.1
Q ss_pred hCCCCCEEEeccccCC----CCC--c-hhhHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM----SYP--G-SVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~----~~~--g-~v~gA~~SG~~aA~~i~ 351 (383)
-+|+++||-||+.+.. .|. | ++-.|+..|+.|++.+.
T Consensus 466 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa 509 (513)
T PRK12837 466 GRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMA 509 (513)
T ss_pred CCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHh
Confidence 4689999999998533 222 2 37889999999999774
No 326
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=37.83 E-value=40 Score=33.43 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=30.4
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.. ...++-|+..|+.+|+.|+.
T Consensus 314 l~Ts~~~IyA~GDv~~~--~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 314 SRTNVPNIYAIGDVTDR--VMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 44567899999999875 35788899999999998863
No 327
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=37.76 E-value=61 Score=31.74 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=29.7
Q ss_pred ccCCcccCceeEEEEecCCe---eEEEE-----------------CCCcEEEcCEEEEecCh
Q 016772 129 KGLDIRLGHRVTKITRHYIG---VKVTV-----------------EGGKTFVADAVVVAVPL 170 (383)
Q Consensus 129 ~~l~I~l~~~V~~I~~~~~~---v~V~~-----------------~~G~~~~ad~VI~t~p~ 170 (383)
++++|++++.|++|..++++ |.+.. .+++++.||.||+++..
T Consensus 324 ~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 324 EGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred CCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 36789999999999866544 44321 12346899999998864
No 328
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.72 E-value=41 Score=34.30 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.3
Q ss_pred CCCCCEEEeccccCC-CCC------chhhHHHHHHHHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSM-SYP------GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 316 ~p~~~l~faG~~~~~-~~~------g~v~gA~~SG~~aA~~i~~~l 354 (383)
+++++||-|||.+.. .++ .++-.|+..|++|++.+.+..
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 479999999998642 121 267788999999999886543
No 329
>PRK13748 putative mercuric reductase; Provisional
Probab=37.66 E-value=35 Score=34.36 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=30.1
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~ 351 (383)
+++.++++|.+||.+.. ...++-|+..|+.||..|+
T Consensus 391 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 391 MRTSVPHIYAAGDCTDQ--PQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred cccCCCCEEEeeecCCC--ccchhHHHHHHHHHHHHHc
Confidence 45667899999999875 3578899999999999885
No 330
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=37.58 E-value=29 Score=35.81 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=36.7
Q ss_pred HHHHHHc-cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 123 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 123 l~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
|.+.|.+ ++++++++-+++|..++....|..+||..+.||-||.++-.
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred HHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc
Confidence 3344433 55899999999998754445689999999999999999843
No 331
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.05 E-value=64 Score=30.93 Aligned_cols=51 Identities=27% Similarity=0.328 Sum_probs=35.0
Q ss_pred ChHHHHHHHHccC-CcccCceeEEEEecCC--eeE--EEECCCcEEEcCEEEEecC
Q 016772 119 GYLPVINTLAKGL-DIRLGHRVTKITRHYI--GVK--VTVEGGKTFVADAVVVAVP 169 (383)
Q Consensus 119 G~~~l~~~L~~~l-~I~l~~~V~~I~~~~~--~v~--V~~~~G~~~~ad~VI~t~p 169 (383)
=+....+--++.+ .+++|++|+.|...+. .+. |.+.++.+++|+++|+++-
T Consensus 99 Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G 154 (436)
T COG3486 99 EYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVG 154 (436)
T ss_pred HHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccC
Confidence 3444455555566 4999999997743222 233 6777888999999999874
No 332
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=36.94 E-value=46 Score=32.95 Aligned_cols=39 Identities=31% Similarity=0.319 Sum_probs=29.0
Q ss_pred hCCCCCEEEeccccC-CCC------CchhhHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATS-MSY------PGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 315 ~~p~~~l~faG~~~~-~~~------~g~v~gA~~SG~~aA~~i~~~ 353 (383)
++++++||-|||... ..+ +.++-.|+..|++|++.+.+.
T Consensus 343 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 343 RTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 478999999999853 211 235677889999999987654
No 333
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=36.88 E-value=50 Score=32.10 Aligned_cols=35 Identities=34% Similarity=0.512 Sum_probs=25.4
Q ss_pred CCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 016772 317 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 317 p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
.++||||||+-+... |+. -|..+|..|+..+...+
T Consensus 329 ~~~~l~~AGqi~g~~--Gy~-ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 329 KRPNLFFAGQITGVE--GYV-ESAASGLLAGINAARLA 363 (436)
T ss_pred CCCCEEeeeeecCch--HHH-HHHHHHHHHHHHHHHHh
Confidence 357999999998652 344 56678888887765544
No 334
>PRK14694 putative mercuric reductase; Provisional
Probab=36.36 E-value=39 Score=33.18 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=30.3
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++.++++|.+||.+.. ...++-|...|+.||..|+.
T Consensus 298 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQ--PQFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cccCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHhcC
Confidence 45567899999999875 45788999999999998753
No 335
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=36.11 E-value=85 Score=30.19 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=37.2
Q ss_pred CcCCCCCCCCChHHHHHHhC----CCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH-HHHHHhCCC
Q 016772 297 GSYSYDTVGKSHDLYERLRI----PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM-RVLERYGEL 361 (383)
Q Consensus 297 g~y~~~~~g~~~~~~~~~~~----p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~-~l~~~~~~~ 361 (383)
|+|+.+.|.....+...++. |.++++|+||+..|. .|-+--...+...|++++. .+...|.++
T Consensus 57 GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn--~Wq~lpa~eAM~~A~~li~ayV~AGF~kI 124 (426)
T PRK15458 57 GGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPN--RWQNLPAAQAMANADDLIKSYVAAGFKKI 124 (426)
T ss_pred CCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHHHHcCCceE
Confidence 88977766544444444432 445799999999983 2334444455555555443 345566554
No 336
>PRK02106 choline dehydrogenase; Validated
Probab=36.01 E-value=53 Score=33.16 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=29.1
Q ss_pred cCCcccCceeEEEEecCCeeE-EEE--CCCc--EEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRHYIGVK-VTV--EGGK--TFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~-V~~--~~G~--~~~ad~VI~t~p 169 (383)
+++|+.++.|++|..++++++ |++ .++. .+.++.||++.-
T Consensus 215 nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaG 259 (560)
T PRK02106 215 NLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAG 259 (560)
T ss_pred CcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccC
Confidence 478999999999998866543 443 3332 367999999874
No 337
>PRK08071 L-aspartate oxidase; Provisional
Probab=35.91 E-value=49 Score=33.02 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=28.0
Q ss_pred hCCCCCEEEeccccCC-CC------CchhhHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM-SY------PGSVHGAFSTGLMAAEDCRMR 353 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~-~~------~g~v~gA~~SG~~aA~~i~~~ 353 (383)
++++++||-|||.... .+ +.++-.|+..|++|++.+...
T Consensus 342 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 342 ETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 3789999999998642 11 125667788999999887543
No 338
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=35.44 E-value=75 Score=30.24 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=29.4
Q ss_pred cCCcccCceeEEEEecCCeeEEEECC------C--cEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEG------G--KTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~------G--~~~~ad~VI~t~p~ 170 (383)
+++++. ..|++|..+++++.|++.+ | .+++||.||.|.-.
T Consensus 106 G~~v~~-~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 106 GAELIH-GLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGA 153 (388)
T ss_pred CCEEEe-eEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCC
Confidence 557754 4699998888888776542 2 36899999988754
No 339
>PRK06370 mercuric reductase; Validated
Probab=35.28 E-value=46 Score=32.64 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 313 RLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 313 ~~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
.+++.++++|.+||.+.. ....+.|...|+.||+.|+.
T Consensus 296 ~l~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 296 QLRTTNPGIYAAGDCNGR--GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 345667899999999865 34678899999999999864
No 340
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=35.18 E-value=91 Score=29.91 Aligned_cols=63 Identities=10% Similarity=0.143 Sum_probs=35.5
Q ss_pred CcCCCCCCCCChHHHHHHhC----CCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH-HHHHHhCCC
Q 016772 297 GSYSYDTVGKSHDLYERLRI----PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM-RVLERYGEL 361 (383)
Q Consensus 297 g~y~~~~~g~~~~~~~~~~~----p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~-~l~~~~~~~ 361 (383)
|+|+.+.|.....+...++. |.++++|+||+..|. -|-+.-...+...|++++. .+...|.++
T Consensus 54 GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn--~Wq~~pa~eAM~~A~~li~ayV~AGF~kI 121 (421)
T PRK15052 54 GGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLGPN--CWQQEPADAAMEKSVELVKAYVRAGFSKI 121 (421)
T ss_pred CCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHHHHcCCceE
Confidence 88877766544444444432 345799999999982 2333333444444554433 345555544
No 341
>PLN02507 glutathione reductase
Probab=34.85 E-value=43 Score=33.27 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=30.2
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++.++++|.+||.+.. ....+-|...|+.+|+.|+.
T Consensus 326 ~~Ts~p~IyAiGDv~~~--~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 326 SRTNIPSIWAIGDVTNR--INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CcCCCCCEEEeeEcCCC--CccHHHHHHHHHHHHHHHcC
Confidence 45667899999999975 34788999999999998753
No 342
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=34.77 E-value=28 Score=33.44 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=24.0
Q ss_pred CCCCCEEEeccccCCC-CC-c-hhhHHHHHHHHHH
Q 016772 316 IPVDNLFFAGEATSMS-YP-G-SVHGAFSTGLMAA 347 (383)
Q Consensus 316 ~p~~~l~faG~~~~~~-~~-g-~v~gA~~SG~~aA 347 (383)
.-+++||||||-+.-. .. | .++-|+.||..|+
T Consensus 365 k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 365 KLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred cCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 3467999999986541 12 2 6888999999886
No 343
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=34.76 E-value=50 Score=33.58 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=29.4
Q ss_pred hCCCCCEEEeccccCC-CC-----C-chhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSM-SY-----P-GSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~-~~-----~-g~v~gA~~SG~~aA~~i~~~l 354 (383)
++++++||-|||..+. .+ + .++-+|+..|++|++.+.+..
T Consensus 367 ~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 367 ETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred ccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 4789999999997532 12 1 266778999999999876543
No 344
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=34.47 E-value=45 Score=32.76 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=30.2
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.. ....+-|...|+.||+.|+.
T Consensus 299 ~~Ts~p~IyAiGD~~~~--~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 299 MRTNVPHIYAIGDVTAK--LQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cccCCCCEEEEeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 45567899999999864 35788999999999998863
No 345
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=33.94 E-value=96 Score=31.30 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=29.9
Q ss_pred cCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~ 170 (383)
++++ ++++|+.|..+++.+.|.+.+| .+.+|+||+|+-.
T Consensus 74 gv~~-~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa 112 (555)
T TIGR03143 74 GVKF-LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGA 112 (555)
T ss_pred CCEE-eccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCC
Confidence 3455 4788999988766667777776 6899999999854
No 346
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=33.80 E-value=1.1e+02 Score=31.30 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=33.8
Q ss_pred HHHHHHHc-----cCCcccCceeEEEEec-CCeeE-EE---ECCCc--EEEcCEEEEecChH
Q 016772 122 PVINTLAK-----GLDIRLGHRVTKITRH-YIGVK-VT---VEGGK--TFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~-----~l~I~l~~~V~~I~~~-~~~v~-V~---~~~G~--~~~ad~VI~t~p~~ 171 (383)
.|+..|.+ +++|.+++.|+++..+ +++|. |. ..+|+ .+.|++||+|+--.
T Consensus 144 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 144 ALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 45555543 4579999999999875 45543 32 23564 47899999998543
No 347
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=33.70 E-value=46 Score=32.55 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=29.5
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.. ....+.|+..|+.||+.|+.
T Consensus 298 ~~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 298 YQTAVPHIYAVGDVIGF--PSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred cccCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 34557899999998754 34788899999999998863
No 348
>PLN02661 Putative thiazole synthesis
Probab=33.67 E-value=1.1e+02 Score=28.82 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=33.3
Q ss_pred HHHHHHHHc--cCCcccCceeEEEEecCCeeE-EEE------CC--C------cEEEcCEEEEecC
Q 016772 121 LPVINTLAK--GLDIRLGHRVTKITRHYIGVK-VTV------EG--G------KTFVADAVVVAVP 169 (383)
Q Consensus 121 ~~l~~~L~~--~l~I~l~~~V~~I~~~~~~v~-V~~------~~--G------~~~~ad~VI~t~p 169 (383)
..|.++..+ +++|+.++.|+.+..+++++. |.. .+ + ..+.|++||+|+-
T Consensus 176 stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 176 STIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 445554443 568999999999988777643 321 11 1 2589999999995
No 349
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=33.38 E-value=45 Score=32.40 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=32.5
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
+.+.+.+||-+||.... .+++..|-.+|..+|+.|+.+.
T Consensus 445 ~~t~i~gLy~aGdGAG~--argI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 445 LSTSIKGLYPAGDGAGL--ARGIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred ceeeecceEEccccccc--cchhHHHhhhhHHHHHHHHHHh
Confidence 56678899999998654 6789999999999999987654
No 350
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=33.18 E-value=1e+02 Score=29.52 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=35.6
Q ss_pred CcCCCCCCCCChHHHHHHhC----CCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH-HHHHHhCCC
Q 016772 297 GSYSYDTVGKSHDLYERLRI----PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM-RVLERYGEL 361 (383)
Q Consensus 297 g~y~~~~~g~~~~~~~~~~~----p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~-~l~~~~~~~ 361 (383)
|+|+.+.|.....+...++. |.++++|+||+..|. .|-+--...+...|++++. .+...|.++
T Consensus 53 GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn--~Wq~lpa~eAM~~A~~li~ayV~AGF~kI 120 (420)
T TIGR02810 53 GGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPN--PWQHLPADEAMAKAAALVDAYVEAGFTKI 120 (420)
T ss_pred CCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHHHHcCCceE
Confidence 88877766544444444432 345799999999983 1233333444444554433 345555544
No 351
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=33.08 E-value=66 Score=32.91 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=28.8
Q ss_pred cCCcccCceeEEEEecCC-eeE-EE--E-CCCc--EEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRHYI-GVK-VT--V-EGGK--TFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~-~v~-V~--~-~~G~--~~~ad~VI~t~p 169 (383)
+++|+++++|+++..+++ +|. |. . .+|+ .+.|+.||+|+-
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATG 193 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATG 193 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 468999999999987543 443 33 2 2453 578999999984
No 352
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=32.87 E-value=47 Score=32.45 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=29.9
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.. ....+-|+..|+.||..|+.
T Consensus 294 ~~ts~~~IyA~GD~~~~--~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 294 TQTSVPGIYAAGDVNGK--PPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cccCCCCEEEEEecCCC--ccchhHHHHHHHHHHHHhcC
Confidence 44567899999999875 34678899999999998864
No 353
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=32.82 E-value=56 Score=32.03 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=31.3
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++.++++|-+||.+... ...|-|...|+.||++|+.
T Consensus 298 ~~Tnvp~IyA~GDV~~~~--~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 298 MTTNVPGIYAIGDVIGGP--MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred cccCCCCEEEeeccCCCc--ccHhHHHHHHHHHHHHHhC
Confidence 345578999999998773 3899999999999999885
No 354
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.67 E-value=47 Score=32.72 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=29.6
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.. +...+.|...|+.||+.|+.
T Consensus 300 ~~t~~p~VyAiGDv~~~--~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQ--PMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cccCCCCEEEehhhcCC--cccHHHHHHHHHHHHHHHcC
Confidence 45567899999998754 34788999999999998863
No 355
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=32.45 E-value=55 Score=31.46 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=35.6
Q ss_pred HHHHHHccCCcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 123 VINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 123 l~~~L~~~l~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
|+++.--++-+..+..|++|..++.. |+.+||.++.+|.+++++-..
T Consensus 264 Lp~~~nGGvAvl~G~kvvkid~~d~~--V~LnDG~~I~YdkcLIATG~~ 310 (659)
T KOG1346|consen 264 LPKAVNGGVAVLRGRKVVKIDEEDKK--VILNDGTTIGYDKCLIATGVR 310 (659)
T ss_pred CcccccCceEEEeccceEEeecccCe--EEecCCcEeehhheeeecCcC
Confidence 33333335568999999999987776 556799999999999998543
No 356
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=32.12 E-value=91 Score=29.23 Aligned_cols=49 Identities=20% Similarity=0.049 Sum_probs=30.9
Q ss_pred HHHHHHHc-cCCcccCceeEEEEecCCeeEEE--------------------ECCCcEEEcCEEEEecCh
Q 016772 122 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVT--------------------VEGGKTFVADAVVVAVPL 170 (383)
Q Consensus 122 ~l~~~L~~-~l~I~l~~~V~~I~~~~~~v~V~--------------------~~~G~~~~ad~VI~t~p~ 170 (383)
.+.+.|.+ +++|++++.|++|..++....|. +.+++.+.+|.||+++..
T Consensus 215 ~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 215 YEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 34444543 57888999999987543211232 122357899999998765
No 357
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=31.92 E-value=37 Score=31.42 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=38.9
Q ss_pred CCCceeccCChHHHHHHHHcc---CC---cccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChH
Q 016772 110 PGGHGLMVRGYLPVINTLAKG---LD---IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 110 ~g~~~~~~gG~~~l~~~L~~~---l~---I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~ 171 (383)
..+...+-||+.+|-..=.+. ++ ......|++.+.+.+. |.+.+|+++..|+.|+|+-+.
T Consensus 79 QPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P~~N~--v~t~gg~eIsYdylviA~Giq 144 (446)
T KOG3851|consen 79 QPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNPDKNT--VVTRGGEEISYDYLVIAMGIQ 144 (446)
T ss_pred CcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCCCcCe--EEccCCcEEeeeeEeeeeece
Confidence 333344556787776543322 11 2233778887766555 678889999999999998764
No 358
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=31.60 E-value=77 Score=30.51 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=33.1
Q ss_pred CCCEEEeccccCCCC----CchhhHHHHHHHHHHHHHHHHHHH
Q 016772 318 VDNLFFAGEATSMSY----PGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 318 ~~~l~faG~~~~~~~----~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
.+++|-+||...... +++.+.|+..|.-+|+.|.+.+..
T Consensus 291 ~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 291 HPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 578999999976543 689999999999999999988754
No 359
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=31.23 E-value=52 Score=36.61 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=29.1
Q ss_pred cCCcccCceeEEEEecC-----C----eeE-E--EEC---CCc--EEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRHY-----I----GVK-V--TVE---GGK--TFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~-----~----~v~-V--~~~---~G~--~~~ad~VI~t~p 169 (383)
+++|+++++|+++..++ + +|. | ... +|+ .+.|++||+|+-
T Consensus 561 gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATG 617 (1167)
T PTZ00306 561 RVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATG 617 (1167)
T ss_pred CcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecC
Confidence 67899999999998753 2 343 3 333 564 578999999984
No 360
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=31.20 E-value=77 Score=30.14 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=34.3
Q ss_pred CccccccccCCceeEEcCCCCccCHHHHHHHHH-HHHHHHHHHHHHHhhCCCCCcHHHHHHH
Q 016772 2 YGVAEDIYSFCSYALFDMDGNQVPQELVTKVGE-AFESILKETDKVREEHDEDMSIQRAISI 62 (383)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~s~~~~l~~ 62 (383)
|.++.+-....++.+.+++|+++..+-...+.. ....+.+.... ..+.-.|.++.+++++
T Consensus 112 y~~d~~dPn~s~cRli~k~g~rv~ddg~~tl~~~~~~ei~kL~~t-~EE~L~~~tI~d~Fse 172 (587)
T COG4716 112 YWLDKDDPNSSNCRLIHKRGRRVDDDGSFTLNNKARKEIIKLLMT-PEEKLDDLTIEDWFSE 172 (587)
T ss_pred HhccCCCCCccceeeeeccccccccccccccChhhHHHHHHHHcC-cHHhcCCccHHHhhhH
Confidence 566677777888999999999887654333321 11111111100 1223357788888764
No 361
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=30.38 E-value=1e+02 Score=29.69 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCCcEEEEccCCCCCCCCCcCCCCCCCCChHHHHHHhC----CCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHH-
Q 016772 279 SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI----PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR- 353 (383)
Q Consensus 279 ~~~~~~~~~~W~~~~~~~g~y~~~~~g~~~~~~~~~~~----p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~- 353 (383)
..|+-+..+.-.=|. .|+|+.+.|..+..+...++. |.++++|+||+..|. .+-+---..+..-|++++.+
T Consensus 41 ~~pvLiEAT~NQVnq--~GGYTGmtP~dF~~~V~~iA~~~g~~~~~iiLGGDHLGP~--~w~~lpaeeAM~~A~~li~ay 116 (424)
T PF08013_consen 41 DSPVLIEATSNQVNQ--FGGYTGMTPADFRDFVREIADEVGFPRDRIILGGDHLGPN--PWQHLPAEEAMAKAKELIRAY 116 (424)
T ss_dssp -S-EEEEEETTTCST--T-TTTTB-HHHHHHHHHHHHHHCT--GGGEEEEEEEESSC--CCTTSBHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccccccc--cCCcCCCCHHHHHHHHHHHHHHcCCchhhEEecCCCCCcc--cccCCCHHHHHHHHHHHHHHH
Confidence 345555554322222 488876655333333333332 345799999999993 23444445666666665544
Q ss_pred HHHHhCCC
Q 016772 354 VLERYGEL 361 (383)
Q Consensus 354 l~~~~~~~ 361 (383)
....|.++
T Consensus 117 v~AGF~KI 124 (424)
T PF08013_consen 117 VEAGFTKI 124 (424)
T ss_dssp HCTT--EE
T ss_pred HHcCCceE
Confidence 33444433
No 362
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.23 E-value=55 Score=32.16 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=30.3
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.. +...+-|...|+.+|+.|+.
T Consensus 301 ~~Ts~~~IyA~GD~~~~--~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 301 HRTSVPGVWVIGDVTSG--PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred eecCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 45667899999999875 34788999999999998864
No 363
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.80 E-value=58 Score=31.85 Aligned_cols=37 Identities=32% Similarity=0.418 Sum_probs=30.0
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|-+||.+.. ....+-|+..|+.+|+.|+.
T Consensus 297 ~~t~~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 297 LRTNVPNIYAIGDIVGG--PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CccCCCCEEEeeecCCC--cchHHHHHHHHHHHHHHHcC
Confidence 34567899999999864 35788999999999998864
No 364
>PRK08401 L-aspartate oxidase; Provisional
Probab=29.61 E-value=74 Score=31.28 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=27.2
Q ss_pred hCCCCCEEEeccccC-CCCC------chhhHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATS-MSYP------GSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 315 ~~p~~~l~faG~~~~-~~~~------g~v~gA~~SG~~aA~~i~~ 352 (383)
++++++||-|||.+. ..++ .++-.|+..|++|++.+.+
T Consensus 320 ~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 320 RTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 378999999999864 2111 1344578889999988754
No 365
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=29.59 E-value=60 Score=31.97 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=29.4
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.. +...+-|...|..||+.|..
T Consensus 310 ~~Ts~~~VyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRG--PMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CccCCCCEEEEEeccCC--cchHHHHHHHHHHHHHHHcC
Confidence 34557899999999865 24788899999999998753
No 366
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.57 E-value=98 Score=29.16 Aligned_cols=54 Identities=24% Similarity=0.390 Sum_probs=39.1
Q ss_pred ccCChHHHHHHHH------ccCCcccCceeEEEEecCCe-eEEEECCCcEEEcCEEEEecC
Q 016772 116 MVRGYLPVINTLA------KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVP 169 (383)
Q Consensus 116 ~~gG~~~l~~~L~------~~l~I~l~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~t~p 169 (383)
+..|++.++..+. +++.+|.++.|+++....++ ..+.+..|....+|.++.|+-
T Consensus 224 vLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiG 284 (478)
T KOG0405|consen 224 VLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIG 284 (478)
T ss_pred hhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEec
Confidence 3467766655443 25679999999999887776 445666776667999999984
No 367
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=29.29 E-value=61 Score=31.74 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=30.2
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|-+||.+.. ....+-|...|+.||+.|+.
T Consensus 292 ~~Ts~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 292 LRTSNPGIYAAGDVTGG--LQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred ccCCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHhcC
Confidence 45667899999999876 34678899999999998864
No 368
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=29.14 E-value=1.3e+02 Score=29.29 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=29.1
Q ss_pred HccCCcccCceeEEEEecC-CeeE-EEEC---------CC-----------cEEEcCEEEEecCh
Q 016772 128 AKGLDIRLGHRVTKITRHY-IGVK-VTVE---------GG-----------KTFVADAVVVAVPL 170 (383)
Q Consensus 128 ~~~l~I~l~~~V~~I~~~~-~~v~-V~~~---------~G-----------~~~~ad~VI~t~p~ 170 (383)
.++++|++++.+++|..++ ++++ |++. +| ..+.||.||+++-.
T Consensus 321 ~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 321 EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 3477899999999997643 3442 3321 23 26899999998854
No 369
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=29.10 E-value=61 Score=31.71 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=29.7
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.+ ....+-|...|+.+|+.|+.
T Consensus 291 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 291 GRTSARGVWALGDVSSP--YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred cccCCCCEEEeecccCc--ccChhHHHHHHHHHHHHhcC
Confidence 45567899999999876 34678899999999998864
No 370
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=29.02 E-value=93 Score=31.85 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=30.3
Q ss_pred CCcccCceeEEEEecCCeeE-E---EECCCc--EEEcCEEEEecCh
Q 016772 131 LDIRLGHRVTKITRHYIGVK-V---TVEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 131 l~I~l~~~V~~I~~~~~~v~-V---~~~~G~--~~~ad~VI~t~p~ 170 (383)
++|+.+++|+.|..++++|. | .+.+|+ .+.|+.||+|+--
T Consensus 148 V~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 148 DNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 78999999999987666543 2 234553 5899999999964
No 371
>PRK08275 putative oxidoreductase; Provisional
Probab=28.68 E-value=76 Score=32.04 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=30.0
Q ss_pred cCCcccCceeEEEEec-CCeeE-EE---ECCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRH-YIGVK-VT---VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~-~~~v~-V~---~~~G~--~~~ad~VI~t~p~ 170 (383)
+++|+.++.|++|..+ ++++. |. ..+|+ .+.|+.||+|+--
T Consensus 151 gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (554)
T PRK08275 151 RVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGA 198 (554)
T ss_pred CCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCC
Confidence 5689999999999876 44443 32 34564 4789999999854
No 372
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=28.46 E-value=1.2e+02 Score=31.31 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=29.5
Q ss_pred cCCcccCceeEEEEec-CCeeE-EE--E-CCCc--EEEcCEEEEecCh
Q 016772 130 GLDIRLGHRVTKITRH-YIGVK-VT--V-EGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~-~~~v~-V~--~-~~G~--~~~ad~VI~t~p~ 170 (383)
+++|..++.|+++..+ +++|. |. . .+|+ .+.|++||+|+--
T Consensus 201 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 201 NTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred CCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 5679999999998765 45543 32 2 3564 5789999999854
No 373
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=28.38 E-value=87 Score=32.40 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=28.6
Q ss_pred CCCCEEEeccccCCC-CC------chhhHHHHHHHHHHHHHHHHHH
Q 016772 317 PVDNLFFAGEATSMS-YP------GSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 317 p~~~l~faG~~~~~~-~~------g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
++++||-|||....+ ++ .++-.|+..|++|++.+.+.+.
T Consensus 385 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 385 GLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred ccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999986421 11 2567788899999998876543
No 374
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.27 E-value=1.4e+02 Score=30.53 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=33.3
Q ss_pred HHHHHHHc-----cCCcccCceeEEEEecC-CeeE-EE---ECCCc--EEEcCEEEEecCh
Q 016772 122 PVINTLAK-----GLDIRLGHRVTKITRHY-IGVK-VT---VEGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 122 ~l~~~L~~-----~l~I~l~~~V~~I~~~~-~~v~-V~---~~~G~--~~~ad~VI~t~p~ 170 (383)
.|.+.|.+ +++|..++.|+++..++ ++|. |. ..+|+ .+.|++||+|+--
T Consensus 149 ~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 149 ALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 45555544 56799999999988753 4443 32 23554 5789999999854
No 375
>PRK12831 putative oxidoreductase; Provisional
Probab=28.02 E-value=1.4e+02 Score=29.34 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=30.4
Q ss_pred HHHHccCCcccCceeEEEEecC-CeeE-EEEC------------------CCc--EEEcCEEEEecCh
Q 016772 125 NTLAKGLDIRLGHRVTKITRHY-IGVK-VTVE------------------GGK--TFVADAVVVAVPL 170 (383)
Q Consensus 125 ~~L~~~l~I~l~~~V~~I~~~~-~~v~-V~~~------------------~G~--~~~ad~VI~t~p~ 170 (383)
++..++++|++++.+++|..++ +++. |.+. +|+ .+.||.||+++..
T Consensus 327 ~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 327 HAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred HHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 3445678899999999987543 3332 2221 222 5899999998864
No 376
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=27.80 E-value=68 Score=31.54 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=29.9
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.. ....+.|...|..||+.++.
T Consensus 300 ~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 300 SRTSVPGIYAAGDCTGV--LPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred cccCCCCEEEEeeccCC--ccchhHHHHHHHHHHHHHcC
Confidence 45567899999999865 34788999999999988763
No 377
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=27.68 E-value=1.5e+02 Score=29.18 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHHHccCCcccCceeEEEEecC-CeeE-EEE---C------CC-----------cEEEcCEEEEecCh
Q 016772 125 NTLAKGLDIRLGHRVTKITRHY-IGVK-VTV---E------GG-----------KTFVADAVVVAVPL 170 (383)
Q Consensus 125 ~~L~~~l~I~l~~~V~~I~~~~-~~v~-V~~---~------~G-----------~~~~ad~VI~t~p~ 170 (383)
++..+++++++++.+++|..++ ++++ |++ . +| ..+.||.||+++-.
T Consensus 329 ~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 329 NAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred HHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 3335678899999999997543 3332 221 1 12 36899999988753
No 378
>PRK07846 mycothione reductase; Reviewed
Probab=27.60 E-value=69 Score=31.32 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=29.6
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+.. ....+-|...|+.+|+.|+.
T Consensus 288 ~~Ts~p~IyA~GD~~~~--~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 288 QRTSAEGVFALGDVSSP--YQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred cccCCCCEEEEeecCCC--ccChhHHHHHHHHHHHHHcC
Confidence 45667899999999876 34678899999999998863
No 379
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=27.51 E-value=68 Score=31.35 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=29.3
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
++..+++|.+||.+.. ....+.|+..|+.+|+.|..
T Consensus 296 ~t~~~~IyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 296 RTNVPGIYAIGDVIGG--PMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred ccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 4456899999999865 34788899999999998864
No 380
>PLN02815 L-aspartate oxidase
Probab=27.31 E-value=98 Score=31.59 Aligned_cols=40 Identities=20% Similarity=0.138 Sum_probs=29.1
Q ss_pred hCCCCCEEEeccccC-CCC------CchhhHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATS-MSY------PGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 315 ~~p~~~l~faG~~~~-~~~------~g~v~gA~~SG~~aA~~i~~~l 354 (383)
++++++||-|||... ..+ +.++-.|+..|++|++.+.+.+
T Consensus 387 ~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 387 ETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred ceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999864 222 1256678889999999876543
No 381
>PLN02546 glutathione reductase
Probab=27.28 E-value=67 Score=32.50 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=30.0
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++.+++||-+||.+.. ....+-|+..|+.+|+.|+.
T Consensus 376 l~Ts~p~IYAaGDv~~~--~~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 376 SRTSVPSIWAVGDVTDR--INLTPVALMEGGALAKTLFG 412 (558)
T ss_pred ceeCCCCEEEeeccCCC--cccHHHHHHHHHHHHHHHcC
Confidence 44567899999999976 35788999999999998764
No 382
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=27.22 E-value=78 Score=31.33 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=29.5
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+++..+++|.+||.+... ....+-|+..|+.+|+.|+.
T Consensus 306 ~~Ts~p~IyA~GDv~~~~-~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 306 EQTNVPYIYAVGDILEDK-QELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cccCCCCEEEEEEecCCC-ccchHHHHHHHHHHHHHHhc
Confidence 445678999999987532 24678899999999999864
No 383
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=26.58 E-value=1.2e+02 Score=33.21 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=28.5
Q ss_pred cCCcccCceeEEEEecCC--eeEEEE--CCCcEEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRHYI--GVKVTV--EGGKTFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~~--~v~V~~--~~G~~~~ad~VI~t~p 169 (383)
+++|++++.|++|..++. +|++.. .+++++.||.|+++..
T Consensus 365 GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G 408 (985)
T TIGR01372 365 GIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGG 408 (985)
T ss_pred CCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCC
Confidence 567999999999975443 234432 2456799999999974
No 384
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=26.52 E-value=99 Score=28.40 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=27.7
Q ss_pred CCEEEeccccCC---CCCchhhHHHHHHHHHHHHHHHHH
Q 016772 319 DNLFFAGEATSM---SYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 319 ~~l~faG~~~~~---~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
+++.+.||+.|. ..+.+++-|+++|...|+.|.+.+
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~ 329 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAAL 329 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHh
Confidence 589999999775 334489999999999998876653
No 385
>PRK09077 L-aspartate oxidase; Provisional
Probab=26.39 E-value=1.5e+02 Score=29.84 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=31.8
Q ss_pred HHHHHHc--cCCcccCceeEEEEecC------CeeE-EE--E-CCCc--EEEcCEEEEecCh
Q 016772 123 VINTLAK--GLDIRLGHRVTKITRHY------IGVK-VT--V-EGGK--TFVADAVVVAVPL 170 (383)
Q Consensus 123 l~~~L~~--~l~I~l~~~V~~I~~~~------~~v~-V~--~-~~G~--~~~ad~VI~t~p~ 170 (383)
|.+.+.+ +++|..+++|+.+..++ ++|. |. . .+|+ .+.|+.||+|+--
T Consensus 144 L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 205 (536)
T PRK09077 144 LVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGG 205 (536)
T ss_pred HHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCC
Confidence 4444433 57899999999987643 4443 33 2 3454 5799999999844
No 386
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=26.15 E-value=70 Score=30.67 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=23.7
Q ss_pred CCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 016772 318 VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 354 (383)
Q Consensus 318 ~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 354 (383)
++||||||+-+.. -|+.+. .-+|..|+..+...+
T Consensus 355 ~~~lf~AGqi~G~--~Gy~ea-aa~G~~ag~na~~~~ 388 (392)
T PF01134_consen 355 IPGLFFAGQINGT--EGYEEA-AAQGLIAGINAARRL 388 (392)
T ss_dssp SBTEEE-GGGGTB---SHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCceECCCCcch--hHHHHH-HHHHHHHHHHHHHHH
Confidence 7899999999876 345554 458888887766554
No 387
>PLN02815 L-aspartate oxidase
Probab=25.41 E-value=98 Score=31.60 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=28.0
Q ss_pred cCCcccCceeEEEEecC-Ce---eE-EE---ECCCc--EEEcCEEEEecC
Q 016772 130 GLDIRLGHRVTKITRHY-IG---VK-VT---VEGGK--TFVADAVVVAVP 169 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~~~-~~---v~-V~---~~~G~--~~~ad~VI~t~p 169 (383)
+++|..+++|+++..++ ++ |. |. ..+|+ .+.|++||+|+-
T Consensus 170 ~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 170 NITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred CCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 46799999999988753 32 32 32 23564 468999999985
No 388
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.60 E-value=1.2e+02 Score=31.30 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=25.0
Q ss_pred hCCCCCEEEeccccCCCCCc------hhhHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPG------SVHGAFSTGLMAAED 349 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g------~v~gA~~SG~~aA~~ 349 (383)
++.+++||-|||.+...+++ ++-+|+..|++|++.
T Consensus 416 ~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 416 MSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred ccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 46799999999975433222 366678888888866
No 389
>PLN02852 ferredoxin-NADP+ reductase
Probab=24.32 E-value=81 Score=31.31 Aligned_cols=41 Identities=7% Similarity=0.023 Sum_probs=33.9
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 356 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~~ 356 (383)
.++++++|.+|+...+. .|-|-.++..|..+|+.|++.+..
T Consensus 383 ~T~ipGvyAaGDi~~Gp-~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 383 ADTEPGLYVVGWLKRGP-TGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ccCCCCEEEeeeEecCC-CCeeeecHhhHHHHHHHHHHHHHc
Confidence 46678999999998864 357888899999999999988765
No 390
>PRK07190 hypothetical protein; Provisional
Probab=24.24 E-value=99 Score=30.63 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=24.4
Q ss_pred CCEEEeccccCC--C-CCchhhHHHHHHHHHHHHHHH
Q 016772 319 DNLFFAGEATSM--S-YPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 319 ~~l~faG~~~~~--~-~~g~v~gA~~SG~~aA~~i~~ 352 (383)
+|++++||+.|. . .+.+|+.+++.+...+..+..
T Consensus 275 gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~ 311 (487)
T PRK07190 275 DRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNM 311 (487)
T ss_pred CcEEEEecccccCCCccccchhhhHHHHHHHHHHHHH
Confidence 699999999764 2 223788888777777766543
No 391
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=24.20 E-value=2e+02 Score=29.06 Aligned_cols=50 Identities=28% Similarity=0.355 Sum_probs=32.8
Q ss_pred HHHHHHHHccCCcccCceeEEEEecCCee---E---EEE----CCC---------cEEEcCEEEEecCh
Q 016772 121 LPVINTLAKGLDIRLGHRVTKITRHYIGV---K---VTV----EGG---------KTFVADAVVVAVPL 170 (383)
Q Consensus 121 ~~l~~~L~~~l~I~l~~~V~~I~~~~~~v---~---V~~----~~G---------~~~~ad~VI~t~p~ 170 (383)
..+-++..++++|++++.+++|..+++++ . +.. .+| .++.+|.||+++..
T Consensus 310 ~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 310 EEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred HHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 34444555678899999999997655442 1 211 222 36899999999874
No 392
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=24.16 E-value=83 Score=30.81 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=29.0
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~ 351 (383)
+++..+++|.+||.+.. ....+-|+..|+.||..+.
T Consensus 293 ~~ts~~~VyA~GD~~~~--~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 293 MQTNVPHIYACGDVIGG--IQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred eecCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHHc
Confidence 34557899999999864 3578889999999998875
No 393
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=23.71 E-value=16 Score=33.89 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=24.9
Q ss_pred hCCCCCEEEeccccCCCCCchhh-----------HHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVH-----------GAFSTGLMAAEDCR 351 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~-----------gA~~SG~~aA~~i~ 351 (383)
-+|+++||-|||....+ +|++| ||+.||+.|.+.+.
T Consensus 503 GqPvpgLyAaGEvAGFG-GGG~HGY~ALEGTFLGgCiFSGRaAGRaaa 549 (552)
T COG3573 503 GQPVPGLYAAGEVAGFG-GGGVHGYRALEGTFLGGCIFSGRAAGRAAA 549 (552)
T ss_pred CCCCcchhhcchhcccC-CCcccchhhhccceecceeecchhhhhhhc
Confidence 36889999999986653 33444 46778877766543
No 394
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=23.15 E-value=1.1e+02 Score=29.04 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=29.8
Q ss_pred cCCcccCceeEEEEe-cCCeeEEEEC-CCc--EEEcCEEEEecChH
Q 016772 130 GLDIRLGHRVTKITR-HYIGVKVTVE-GGK--TFVADAVVVAVPLG 171 (383)
Q Consensus 130 ~l~I~l~~~V~~I~~-~~~~v~V~~~-~G~--~~~ad~VI~t~p~~ 171 (383)
++.++++++++.+.. +++++.|+.. +|+ +++||.||-|=-..
T Consensus 117 g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~ 162 (390)
T TIGR02360 117 GLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFH 162 (390)
T ss_pred CCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCc
Confidence 456899999888754 5556666664 774 68999888776543
No 395
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=23.05 E-value=1.1e+02 Score=33.56 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016772 318 VDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 355 (383)
Q Consensus 318 ~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 355 (383)
++++|.|||.+.. ..+..|+.+|..||..|+..+.
T Consensus 438 v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 438 VQGCILAGAANGL---FGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred CCCeEEeeccCCc---cCHHHHHHHHHHHHHHHHHHcC
Confidence 5799999998754 4677899999999998877653
No 396
>PRK06847 hypothetical protein; Provisional
Probab=22.71 E-value=1e+02 Score=28.99 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=26.3
Q ss_pred CCEEEeccccCCC---CCchhhHHHHHHHHHHHHHH
Q 016772 319 DNLFFAGEATSMS---YPGSVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 319 ~~l~faG~~~~~~---~~g~v~gA~~SG~~aA~~i~ 351 (383)
+++.++||+.|.. .+.+++.|++.+...|+.+.
T Consensus 282 grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~ 317 (375)
T PRK06847 282 GRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELA 317 (375)
T ss_pred CeEEEEechhccCCCCccccHHHHHHHHHHHHHHHh
Confidence 6899999997752 34588999999988887764
No 397
>PTZ00052 thioredoxin reductase; Provisional
Probab=21.95 E-value=1.2e+02 Score=30.18 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=29.3
Q ss_pred hCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHHH
Q 016772 315 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 352 (383)
Q Consensus 315 ~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 352 (383)
++..+++|.+||.+... +...+-|+..|+.+|+.|+.
T Consensus 304 ~Ts~p~IyAiGDv~~~~-~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 304 CTNIPNIFAVGDVVEGR-PELTPVAIKAGILLARRLFK 340 (499)
T ss_pred cCCCCCEEEEEEecCCC-cccHHHHHHHHHHHHHHHhC
Confidence 45578999999987532 35788999999999998864
No 398
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.90 E-value=99 Score=28.53 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=34.8
Q ss_pred HHHHHHHccC-----CcccCceeEEEEecCCeeEEEECCCcEEEcCEEEEecChHH
Q 016772 122 PVINTLAKGL-----DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 172 (383)
Q Consensus 122 ~l~~~L~~~l-----~I~l~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~t~p~~~ 172 (383)
.|.+.+.+.. ++.. ..|.+++..++...|+|.+|+ ++|++||+|+-...
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 4555555432 3333 677777766656789999996 99999999998764
No 399
>PF03550 LolB: Outer membrane lipoprotein LolB; InterPro: IPR004565 This protein, LolB, is known so far only in the gamma subdivision of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. In Escherichia coli, lipoproteins are anchored to the periplasmic side of either the inner or outer membrane through N-terminal lipids, depending on the lipoprotein-sorting signal present at position 2 []. Five Lol proteins are involved in the sorting and outer membrane localization of lipoproteins. LolCDE, an ATP binding cassette (ABC) transporter, in the inner membrane releases outer membrane-directed lipoproteins from the inner membrane in an ATP-dependent manner, leading to the formation of a water-soluble complex between the lipoprotein and LolA. The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which is essential for the anchoring of lipoproteins to the outer membrane.; GO: 0015031 protein transport, 0009279 cell outer membrane; PDB: 1IWM_B 1IWN_A.
Probab=21.47 E-value=1.4e+02 Score=24.31 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=20.0
Q ss_pred cCceeEEEEecCCeeEEEECCCcEEEc
Q 016772 135 LGHRVTKITRHYIGVKVTVEGGKTFVA 161 (383)
Q Consensus 135 l~~~V~~I~~~~~~v~V~~~~G~~~~a 161 (383)
|++.+.+|..+++.+++.+.+|+.+.+
T Consensus 41 lG~~~~~l~~~~~~~~L~~~~g~~~~a 67 (157)
T PF03550_consen 41 LGQTVARLEGDPQGATLIDSDGQTYQA 67 (157)
T ss_dssp TS-EEEEEEEETTEEEEE-TTS-EEEE
T ss_pred CCccEEEEEECCCEEEEEECCCcEEec
Confidence 678889999999999998888876654
No 400
>PF11423 Repressor_Mnt: Regulatory protein Mnt; InterPro: IPR024421 Mnt is a repressor which is involved in the genetic switch between lysogenic and lytic growth in bacteriophage P22. The C-terminal domain of the protein consists of a dimer of two antiparallel coiled coils with a right handed twist, which is both stronger and has closer inter-helical separation compared with those found in left-handed coiled coils []. This entry is represented by Bacteriophage P22, Mnt. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 1QEY_C 1MNT_B.
Probab=20.77 E-value=79 Score=17.66 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=16.8
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHhC
Q 016772 251 LARDIEKMSDEAAANFAFTQLKKIL 275 (383)
Q Consensus 251 ~a~~~~~~~~ee~~~~v~~~L~~~~ 275 (383)
.|+.+.+.-.+.+.+.+.+.|+.+|
T Consensus 3 dAER~Ad~qse~vkk~VfetLK~~Y 27 (30)
T PF11423_consen 3 DAERLADQQSEMVKKMVFETLKDMY 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445544444677888888888876
No 401
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=20.31 E-value=1.2e+02 Score=29.53 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=29.1
Q ss_pred HhCCCCCEEEeccccCCCCCchhhHHHHHHHHHHHHHH
Q 016772 314 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 351 (383)
Q Consensus 314 ~~~p~~~l~faG~~~~~~~~g~v~gA~~SG~~aA~~i~ 351 (383)
+++..+++|-+||.+.. ....+-|+..|+.+++.|+
T Consensus 280 ~~Ts~~~IyA~GD~~~~--~~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 280 LHTTADNIWAMGDVTGG--LQFTYISLDDYRIVRDELL 315 (441)
T ss_pred cccCCCCEEEeeecCCC--ccchhHHHHHHHHHHHHHc
Confidence 45667899999999875 3578889989999998875
No 402
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=20.26 E-value=1.2e+02 Score=29.83 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=35.1
Q ss_pred hHHHHHHHHc--cCCcccCceeEEEEecCC-ee---EEEECCC--cEEEcCEEEEec-ChHHHh
Q 016772 120 YLPVINTLAK--GLDIRLGHRVTKITRHYI-GV---KVTVEGG--KTFVADAVVVAV-PLGVLK 174 (383)
Q Consensus 120 ~~~l~~~L~~--~l~I~l~~~V~~I~~~~~-~v---~V~~~~G--~~~~ad~VI~t~-p~~~l~ 174 (383)
|..|.++..+ +++|.-++.+..|..+++ .+ .+...++ ..+.|+.||+|+ -.+.|.
T Consensus 136 ~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 136 MTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred HHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 4445555544 567888888888888877 33 3333333 468899999987 444443
No 403
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=20.15 E-value=2e+02 Score=31.47 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHHHHHccCCcccCceeEEEEecCCeeE-----------------EEECCCcEEEcCEEEEecChH
Q 016772 122 PVINTLAKGLDIRLGHRVTKITRHYIGVK-----------------VTVEGGKTFVADAVVVAVPLG 171 (383)
Q Consensus 122 ~l~~~L~~~l~I~l~~~V~~I~~~~~~v~-----------------V~~~~G~~~~ad~VI~t~p~~ 171 (383)
.+-+++.+++++++++.+++|.. ++++. +.+.++.++.||.||+++...
T Consensus 713 Ele~AleeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 713 EYEEALEDGVEFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HHHHHHHcCCEEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 34455566778888888888853 22221 223344579999999998653
Done!