Query 016774
Match_columns 383
No_of_seqs 189 out of 1923
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 7.4E-42 1.6E-46 329.6 35.8 302 20-381 150-469 (470)
2 KOG4693 Uncharacterized conser 100.0 9E-43 1.9E-47 291.4 23.1 300 38-383 13-348 (392)
3 PLN02153 epithiospecifier prot 100.0 4.3E-41 9.3E-46 313.1 35.1 306 18-380 4-339 (341)
4 KOG1230 Protein containing rep 100.0 5.2E-38 1.1E-42 277.3 19.9 259 88-381 62-341 (521)
5 PLN02193 nitrile-specifier pro 100.0 3E-36 6.6E-41 290.6 33.3 293 41-381 113-411 (470)
6 KOG0379 Kelch repeat-containin 100.0 1.2E-36 2.6E-41 292.5 28.7 276 36-355 58-341 (482)
7 PLN02153 epithiospecifier prot 100.0 2.7E-35 5.8E-40 274.2 29.5 260 78-380 5-284 (341)
8 TIGR03548 mutarot_permut cycli 100.0 4.1E-35 8.8E-40 271.0 30.2 273 37-360 2-317 (323)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 5.7E-35 1.2E-39 272.9 30.8 266 35-357 4-332 (346)
10 KOG4441 Proteins containing BT 100.0 5E-35 1.1E-39 285.6 28.0 260 36-356 273-532 (571)
11 KOG4441 Proteins containing BT 100.0 5.1E-35 1.1E-39 285.5 26.3 252 14-327 304-555 (571)
12 KOG4693 Uncharacterized conser 100.0 1.2E-35 2.7E-40 248.7 18.3 246 15-286 48-313 (392)
13 PHA02713 hypothetical protein; 100.0 1.1E-34 2.4E-39 284.3 25.6 250 14-327 275-542 (557)
14 PRK14131 N-acetylneuraminic ac 100.0 9.3E-34 2E-38 266.7 28.9 264 36-357 26-354 (376)
15 KOG0379 Kelch repeat-containin 100.0 3.6E-34 7.9E-39 275.4 26.1 231 87-358 55-287 (482)
16 PHA02713 hypothetical protein; 100.0 2.5E-33 5.5E-38 274.7 28.2 247 50-357 259-523 (557)
17 KOG4152 Host cell transcriptio 100.0 1.2E-33 2.6E-38 255.5 21.4 312 18-380 14-363 (830)
18 PHA03098 kelch-like protein; P 100.0 2.5E-32 5.3E-37 269.5 28.2 249 17-327 270-520 (534)
19 KOG1230 Protein containing rep 100.0 9.9E-33 2.2E-37 244.0 20.1 247 36-305 64-345 (521)
20 TIGR03548 mutarot_permut cycli 100.0 2.6E-31 5.6E-36 245.7 25.7 232 21-294 51-322 (323)
21 KOG4152 Host cell transcriptio 100.0 2.4E-32 5.2E-37 247.2 18.0 291 14-326 60-389 (830)
22 PHA03098 kelch-like protein; P 100.0 1E-30 2.2E-35 258.0 27.3 224 79-357 273-498 (534)
23 TIGR03547 muta_rot_YjhT mutatr 100.0 2.2E-30 4.9E-35 241.9 26.5 242 18-299 38-345 (346)
24 PRK14131 N-acetylneuraminic ac 100.0 6.1E-30 1.3E-34 240.8 24.9 242 20-300 61-368 (376)
25 PHA02790 Kelch-like protein; P 100.0 5.2E-28 1.1E-32 234.1 26.9 203 45-300 268-470 (480)
26 PHA02790 Kelch-like protein; P 100.0 3.7E-26 8.1E-31 221.1 25.1 190 98-356 267-456 (480)
27 COG3055 Uncharacterized protei 99.9 1.8E-19 3.9E-24 158.2 22.3 285 36-370 34-373 (381)
28 COG3055 Uncharacterized protei 99.8 1.4E-17 3E-22 146.4 19.5 254 11-300 60-374 (381)
29 KOG2437 Muskelin [Signal trans 99.7 7.6E-19 1.6E-23 159.7 1.4 333 20-379 238-611 (723)
30 KOG2437 Muskelin [Signal trans 99.7 6.8E-17 1.5E-21 147.1 6.9 195 78-287 237-459 (723)
31 PF03089 RAG2: Recombination a 99.2 4.8E-09 1E-13 90.1 20.0 189 89-290 19-234 (337)
32 PF03089 RAG2: Recombination a 99.2 3.5E-09 7.6E-14 90.9 17.8 142 150-300 21-190 (337)
33 PF13964 Kelch_6: Kelch motif 99.1 2.4E-10 5.1E-15 74.4 6.0 50 92-151 1-50 (50)
34 PLN02772 guanylate kinase 99.1 1E-09 2.2E-14 100.9 10.2 89 90-188 22-110 (398)
35 PF13964 Kelch_6: Kelch motif 99.0 9.2E-10 2E-14 71.6 6.3 50 150-206 1-50 (50)
36 PLN02772 guanylate kinase 99.0 4.8E-09 1.1E-13 96.5 11.4 88 147-242 21-109 (398)
37 PF13418 Kelch_4: Galactose ox 98.9 1.5E-09 3.3E-14 70.3 3.9 45 150-198 1-45 (49)
38 PF13415 Kelch_3: Galactose ox 98.9 4.8E-09 1E-13 67.8 5.9 47 216-272 1-48 (49)
39 PF13415 Kelch_3: Galactose ox 98.9 5.1E-09 1.1E-13 67.7 5.8 47 162-214 2-49 (49)
40 PF13418 Kelch_4: Galactose ox 98.8 3.6E-09 7.7E-14 68.5 4.2 44 205-250 1-44 (49)
41 PF07646 Kelch_2: Kelch motif; 98.8 1.7E-08 3.8E-13 65.2 5.7 45 92-143 1-47 (49)
42 PF13854 Kelch_5: Kelch motif 98.7 3.4E-08 7.3E-13 61.4 4.9 38 89-126 1-39 (42)
43 PF01344 Kelch_1: Kelch motif; 98.7 1.8E-08 4E-13 64.5 3.8 45 92-143 1-45 (47)
44 PF01344 Kelch_1: Kelch motif; 98.7 2.7E-08 5.8E-13 63.7 4.4 44 150-198 1-44 (47)
45 PF13854 Kelch_5: Kelch motif 98.7 5.4E-08 1.2E-12 60.4 5.0 40 147-187 1-41 (42)
46 PF07646 Kelch_2: Kelch motif; 98.6 1E-07 2.3E-12 61.5 5.7 44 150-198 1-46 (49)
47 smart00612 Kelch Kelch domain. 98.3 2E-06 4.3E-11 54.8 4.9 46 163-215 1-46 (47)
48 smart00612 Kelch Kelch domain. 98.1 3.8E-06 8.2E-11 53.4 4.0 46 104-160 1-46 (47)
49 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.002 4.4E-08 56.3 17.4 145 122-300 49-197 (243)
50 PF07250 Glyoxal_oxid_N: Glyox 97.7 0.0055 1.2E-07 53.6 17.7 147 78-250 54-205 (243)
51 PRK11138 outer membrane biogen 96.3 1.1 2.3E-05 42.8 26.7 203 43-302 64-276 (394)
52 PF12768 Rax2: Cortical protei 95.8 0.46 1E-05 42.7 14.5 119 165-298 2-121 (281)
53 TIGR01640 F_box_assoc_1 F-box 95.4 1.6 3.5E-05 38.0 19.8 197 14-242 17-229 (230)
54 TIGR01640 F_box_assoc_1 F-box 95.3 1.8 4E-05 37.6 18.8 150 120-298 15-174 (230)
55 PF12768 Rax2: Cortical protei 94.3 0.76 1.7E-05 41.3 11.4 105 221-355 2-110 (281)
56 PRK13684 Ycf48-like protein; P 93.7 6 0.00013 36.8 23.4 204 78-355 117-322 (334)
57 PF07893 DUF1668: Protein of u 93.6 4.5 9.8E-05 37.7 15.6 133 101-269 75-225 (342)
58 PRK11138 outer membrane biogen 91.7 12 0.00027 35.5 25.9 195 41-301 113-313 (394)
59 KOG2055 WD40 repeat protein [G 91.0 11 0.00023 35.9 14.0 107 102-242 269-375 (514)
60 PLN00033 photosystem II stabil 90.4 17 0.00036 34.7 25.4 113 193-354 271-389 (398)
61 PF07893 DUF1668: Protein of u 90.0 16 0.00035 34.0 15.5 54 159-226 74-127 (342)
62 PRK13684 Ycf48-like protein; P 89.0 19 0.00042 33.4 18.8 161 78-284 160-322 (334)
63 PF14870 PSII_BNR: Photosynthe 88.9 18 0.0004 33.0 21.3 248 19-355 45-295 (302)
64 KOG2055 WD40 repeat protein [G 88.8 22 0.00048 33.8 14.4 106 161-301 268-375 (514)
65 TIGR03300 assembly_YfgL outer 86.6 29 0.00062 32.6 25.9 158 43-250 60-217 (377)
66 PF08268 FBA_3: F-box associat 82.8 20 0.00044 27.8 12.0 80 163-251 7-88 (129)
67 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.7 54 0.0012 32.6 17.4 77 156-250 65-147 (527)
68 PF13360 PQQ_2: PQQ-like domai 82.5 31 0.00066 29.7 22.6 153 98-301 32-192 (238)
69 PF13088 BNR_2: BNR repeat-lik 82.0 23 0.0005 31.5 11.3 160 157-351 114-275 (275)
70 cd00216 PQQ_DH Dehydrogenases 81.9 55 0.0012 32.2 22.6 134 94-250 53-192 (488)
71 PF13360 PQQ_2: PQQ-like domai 80.1 38 0.00081 29.1 23.4 192 45-302 33-232 (238)
72 PF12217 End_beta_propel: Cata 78.7 47 0.001 29.4 19.7 278 44-356 21-334 (367)
73 TIGR03300 assembly_YfgL outer 77.1 65 0.0014 30.2 24.7 189 45-301 102-298 (377)
74 cd00216 PQQ_DH Dehydrogenases 75.8 85 0.0018 30.9 23.8 184 41-250 54-273 (488)
75 PF08268 FBA_3: F-box associat 75.5 36 0.00077 26.4 10.9 73 216-298 5-77 (129)
76 COG4880 Secreted protein conta 74.7 77 0.0017 30.2 12.0 78 42-130 380-460 (603)
77 PF13088 BNR_2: BNR repeat-lik 74.6 61 0.0013 28.7 15.7 131 134-280 143-275 (275)
78 PRK11028 6-phosphogluconolacto 74.2 71 0.0015 29.3 19.9 16 339-354 179-194 (330)
79 TIGR03075 PQQ_enz_alc_DH PQQ-d 73.9 81 0.0017 31.4 13.2 132 96-251 63-199 (527)
80 PF12217 End_beta_propel: Cata 72.8 68 0.0015 28.4 18.2 228 42-286 78-335 (367)
81 PF14870 PSII_BNR: Photosynthe 68.1 97 0.0021 28.3 22.2 246 19-356 4-253 (302)
82 PLN00033 photosystem II stabil 65.5 1.3E+02 0.0028 28.8 25.6 203 20-284 74-300 (398)
83 cd00094 HX Hemopexin-like repe 62.1 95 0.0021 26.1 16.4 60 161-242 110-176 (194)
84 KOG0310 Conserved WD40 repeat- 61.4 1.6E+02 0.0035 28.4 12.5 113 155-301 73-185 (487)
85 PRK04792 tolB translocation pr 60.8 1.7E+02 0.0036 28.5 15.0 61 178-251 242-302 (448)
86 PF05096 Glu_cyclase_2: Glutam 59.5 1.3E+02 0.0028 26.8 11.1 105 160-301 54-158 (264)
87 KOG0646 WD40 repeat protein [G 55.0 2E+02 0.0044 27.6 14.3 25 270-300 283-307 (476)
88 KOG0649 WD40 repeat protein [G 53.6 1.6E+02 0.0034 26.0 13.8 111 102-250 126-242 (325)
89 PRK04792 tolB translocation pr 49.8 2.5E+02 0.0055 27.2 17.3 97 178-301 286-383 (448)
90 PRK04922 tolB translocation pr 49.4 2.5E+02 0.0054 27.0 19.7 61 177-250 227-287 (433)
91 TIGR02800 propeller_TolB tol-p 48.5 2.4E+02 0.0052 26.6 18.4 97 178-300 258-354 (417)
92 PRK00178 tolB translocation pr 48.3 2.5E+02 0.0055 26.8 20.4 60 178-251 223-283 (430)
93 PRK05137 tolB translocation pr 48.3 2.6E+02 0.0056 26.9 19.0 61 178-251 226-286 (435)
94 KOG2321 WD40 repeat protein [G 45.4 3.3E+02 0.0071 27.3 12.1 121 89-242 130-259 (703)
95 KOG0310 Conserved WD40 repeat- 44.8 3E+02 0.0065 26.7 12.2 137 100-286 163-301 (487)
96 KOG2048 WD40 repeat protein [G 44.1 3.6E+02 0.0078 27.4 11.3 135 152-334 431-567 (691)
97 PRK11028 6-phosphogluconolacto 43.8 2.5E+02 0.0055 25.5 24.0 9 234-242 149-157 (330)
98 PF08450 SGL: SMP-30/Gluconola 43.6 2.2E+02 0.0047 24.7 15.8 110 161-300 11-123 (246)
99 PF02191 OLF: Olfactomedin-lik 41.7 2.5E+02 0.0054 24.9 14.4 162 36-223 66-237 (250)
100 PF15525 DUF4652: Domain of un 41.1 2.2E+02 0.0047 24.0 10.9 67 175-250 85-155 (200)
101 PF10282 Lactonase: Lactonase, 40.7 3E+02 0.0065 25.5 18.9 114 207-353 145-263 (345)
102 TIGR02658 TTQ_MADH_Hv methylam 39.0 3.3E+02 0.0072 25.5 13.5 72 103-188 13-87 (352)
103 PF02897 Peptidase_S9_N: Proly 38.5 3.5E+02 0.0076 25.6 10.6 154 154-352 127-293 (414)
104 KOG0649 WD40 repeat protein [G 37.4 2.9E+02 0.0063 24.4 15.1 124 135-284 98-226 (325)
105 PF14583 Pectate_lyase22: Olig 36.6 3.8E+02 0.0082 25.5 13.5 208 49-301 47-273 (386)
106 cd00094 HX Hemopexin-like repe 36.6 2.5E+02 0.0055 23.5 15.0 108 162-301 63-176 (194)
107 TIGR02800 propeller_TolB tol-p 32.9 4.2E+02 0.0092 24.9 18.4 59 178-250 214-273 (417)
108 TIGR03866 PQQ_ABC_repeats PQQ- 32.7 3.4E+02 0.0073 23.7 23.6 103 103-242 43-146 (300)
109 TIGR03866 PQQ_ABC_repeats PQQ- 31.8 3.5E+02 0.0075 23.6 24.2 9 234-242 180-188 (300)
110 PF13540 RCC1_2: Regulator of 31.7 63 0.0014 17.8 2.5 18 152-169 8-25 (30)
111 KOG2321 WD40 repeat protein [G 31.6 5.5E+02 0.012 25.8 10.5 73 149-242 132-206 (703)
112 KOG0278 Serine/threonine kinas 30.7 1E+02 0.0022 27.2 4.7 55 160-226 234-288 (334)
113 KOG0289 mRNA splicing factor [ 30.5 5E+02 0.011 25.0 13.0 73 151-242 348-420 (506)
114 smart00155 PLDc Phospholipase 30.4 80 0.0017 16.9 2.8 23 265-287 3-25 (28)
115 PF08950 DUF1861: Protein of u 30.4 2.1E+02 0.0046 25.7 6.6 61 46-111 34-95 (298)
116 PRK04043 tolB translocation pr 27.8 5.5E+02 0.012 24.7 18.5 60 178-251 257-317 (419)
117 PF15525 DUF4652: Domain of un 27.8 3.7E+02 0.0081 22.7 10.0 69 115-198 84-156 (200)
118 KOG4649 PQQ (pyrrolo-quinoline 27.0 4.6E+02 0.01 23.5 9.2 102 211-352 16-120 (354)
119 TIGR03074 PQQ_membr_DH membran 25.9 8E+02 0.017 25.9 15.2 173 54-248 141-351 (764)
120 COG1520 FOG: WD40-like repeat 24.3 5.8E+02 0.013 23.7 19.6 155 99-302 65-219 (370)
121 TIGR02658 TTQ_MADH_Hv methylam 23.1 6.3E+02 0.014 23.7 24.7 60 274-356 258-321 (352)
122 PF10282 Lactonase: Lactonase, 22.9 6.1E+02 0.013 23.4 21.1 161 152-357 145-314 (345)
123 PF14830 Haemocyan_bet_s: Haem 22.4 73 0.0016 23.8 2.1 27 100-126 34-60 (103)
124 KOG0268 Sof1-like rRNA process 21.1 3E+02 0.0065 25.8 6.0 56 276-360 284-339 (433)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=7.4e-42 Score=329.56 Aligned_cols=302 Identities=21% Similarity=0.313 Sum_probs=242.6
Q ss_pred ccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCC-CCCceEEEEeccCcccccceEEcCC--CCCC-CCcc
Q 016774 20 SVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGR-HLDDTWVAYVGNDFQGMLKWQKVNS--GIPS-GRFG 95 (383)
Q Consensus 20 ~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~-~~~~~~~~~~~~~~~~~~~W~~~~~--~~p~-~r~~ 95 (383)
..+|.++...+.. |.||.+|++++++++|||+||...... ..+++|+|++..+ +|+.++. ..|. +|.+
T Consensus 150 ~~~W~~~~~~~~~---P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~-----~W~~~~~~g~~P~~~~~~ 221 (470)
T PLN02193 150 LGKWIKVEQKGEG---PGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETR-----TWSISPATGDVPHLSCLG 221 (470)
T ss_pred hceEEEcccCCCC---CCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCC-----EEEeCCCCCCCCCCcccc
Confidence 3799999877666 899999999999999999999754333 4478999999555 9998753 2343 4678
Q ss_pred eeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCC
Q 016774 96 HTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGL 175 (383)
Q Consensus 96 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~ 175 (383)
|++++++++||||||... ...++++|+||+ .+++|+++.+.+..|.+|+.|+++..++ +|||+||.+.. .
T Consensus 222 ~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~-------~t~~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~~~~-~ 291 (470)
T PLN02193 222 VRMVSIGSTLYVFGGRDA-SRQYNGFYSFDT-------TTNEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGVSAT-A 291 (470)
T ss_pred eEEEEECCEEEEECCCCC-CCCCccEEEEEC-------CCCEEEEcCcCCCCCCCccceEEEEECC-EEEEECCCCCC-C
Confidence 999999999999999864 345889999999 6999999987666689999999988877 99999998543 3
Q ss_pred cccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccc
Q 016774 176 RLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL 254 (383)
Q Consensus 176 ~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~ 254 (383)
.++++++||+.++ +|++++ ....|.+|..|+++.+ +++||++||... ...+++++||+.+ ++|+++.
T Consensus 292 ~~~~~~~yd~~t~----~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g--~~~~dv~~yD~~t--~~W~~~~--- 359 (470)
T PLN02193 292 RLKTLDSYNIVDK----KWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNG--CEVDDVHYYDPVQ--DKWTQVE--- 359 (470)
T ss_pred CcceEEEEECCCC----EEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCC--CccCceEEEECCC--CEEEEec---
Confidence 5789999999999 999997 3446788999999988 599999999742 3468999999999 9999995
Q ss_pred cCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC--------CCCCCCcEEEEEcCCCcccccccccccccccccccceeec
Q 016774 255 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLR 326 (383)
Q Consensus 255 ~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 326 (383)
..+..|.+|..|++++ .+++|||+||... .....+++|+||+. +.+|+++.
T Consensus 360 --~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~------------------t~~W~~~~ 418 (470)
T PLN02193 360 --TFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE------------------TLQWERLD 418 (470)
T ss_pred --cCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEcC------------------cCEEEEcc
Confidence 4456789999999886 8999999999853 12346799999998 78899887
Q ss_pred cCC---CCCCCccceeee--ecCCCcEEEEEcCccCCccccCCCccccccCeeeEEEeec
Q 016774 327 AEG---YKPNCRSFHRAC--PDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP 381 (383)
Q Consensus 327 ~~~---~~p~~r~~~~~~--~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (383)
..+ ..|.+|..|+++ .+...+.+++|||..+.. +..+|+|.|+++.
T Consensus 419 ~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~---------~~~~D~~~~~~~~ 469 (470)
T PLN02193 419 KFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTN---------DRFDDLFFYGIDS 469 (470)
T ss_pred cCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcc---------ccccceEEEecCC
Confidence 543 467888777543 233345699999996532 3448999998864
No 2
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=9e-43 Score=291.43 Aligned_cols=300 Identities=27% Similarity=0.441 Sum_probs=248.6
Q ss_pred CCcccceeeeCCEEEEEccccCCCC----CCCceEEEEeccCcccccceEEcCC------------CCCCCCcceeEEEE
Q 016774 38 PRASHSLNFVSNCLVLFGGGCEGGR----HLDDTWVAYVGNDFQGMLKWQKVNS------------GIPSGRFGHTCVVI 101 (383)
Q Consensus 38 ~r~~~~~~~~~~~i~v~GG~~~~~~----~~~~~~~~~~~~~~~~~~~W~~~~~------------~~p~~r~~~~~~~~ 101 (383)
.|..|+++.++++||-|||+..+.. .-=|+..++..+ .+|.+++. ..|-.|++|+.+.+
T Consensus 13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~-----~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y 87 (392)
T KOG4693|consen 13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAEN-----YRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY 87 (392)
T ss_pred ccccceeeeecceEEecCCcccccccccCCcceeEEeeccc-----eeEEecCcccccccccCCCCccchhhcCceEEEE
Confidence 7899999999999999999866522 112566677644 49999864 13568999999999
Q ss_pred CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC-Ccccce
Q 016774 102 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG-LRLGDT 180 (383)
Q Consensus 102 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~-~~~~~~ 180 (383)
++++||.||+++....-|-+|+||+ +++.|.+....+..|..|.+|++|+.++ .+|||||+..+. ..++|+
T Consensus 88 ~d~~yvWGGRND~egaCN~Ly~fDp-------~t~~W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 88 QDKAYVWGGRNDDEGACNLLYEFDP-------ETNVWKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDAQRFSQDT 159 (392)
T ss_pred cceEEEEcCccCcccccceeeeecc-------ccccccccceeeecCCccCCceeeEECc-EEEEecChHHHHHhhhccc
Confidence 9999999999986667788999999 7999999999999999999999999999 999999985443 567899
Q ss_pred EEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCC--------CCccccEEEEEcccCccceEEec
Q 016774 181 WVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVG--------YEVLNDVWFLDVYEGFFKWVQIP 251 (383)
Q Consensus 181 ~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~--------~~~~~~v~~~~~~~~~~~W~~i~ 251 (383)
+.+|+.|- +|..+. .+..|.-|-.|+++++ ++.+|||||+.+. ..+.+.|..+|+.+ ..|...+
T Consensus 160 h~ld~~Tm----tWr~~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T--~aW~r~p 232 (392)
T KOG4693|consen 160 HVLDFATM----TWREMHTKGDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLAT--GAWTRTP 232 (392)
T ss_pred eeEeccce----eeeehhccCCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcceeEEEeccc--cccccCC
Confidence 99999986 999998 5667778899999999 4999999999432 23556789999999 9999985
Q ss_pred ccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC-CCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCC
Q 016774 252 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGY 330 (383)
Q Consensus 252 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 330 (383)
.....|..|++|++.+ .++++|+|||+++. +...+|+|.||+. +..|..+.+.|.
T Consensus 233 -----~~~~~P~GRRSHS~fv-Yng~~Y~FGGYng~ln~HfndLy~FdP~------------------t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 233 -----ENTMKPGGRRSHSTFV-YNGKMYMFGGYNGTLNVHFNDLYCFDPK------------------TSMWSVISVRGK 288 (392)
T ss_pred -----CCCcCCCcccccceEE-EcceEEEecccchhhhhhhcceeecccc------------------cchheeeeccCC
Confidence 6677899999999998 99999999999875 4558999999998 789999999999
Q ss_pred CCCCccceeeeecCCCcEEEEEcCccCCc---cccC------CCccccccCeeeEEEeeccC
Q 016774 331 KPNCRSFHRACPDYSGRYLYVFGGMVDGL---VQPA------DTSGLRFDGRLLLVELVPLL 383 (383)
Q Consensus 331 ~p~~r~~~~~~~~~~~~~l~v~GG~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~ 383 (383)
.|.+|.-+.+++. ++++|+|||-++.. +.+. +...+.=.+||..||++|+|
T Consensus 289 ~P~aRRRqC~~v~--g~kv~LFGGTsP~~~~~~Spt~~~G~~~~~~LiD~SDLHvLDF~PsL 348 (392)
T KOG4693|consen 289 YPSARRRQCSVVS--GGKVYLFGGTSPLPCHPLSPTNYNGMISPSGLIDLSDLHVLDFAPSL 348 (392)
T ss_pred CCCcccceeEEEE--CCEEEEecCCCCCCCCCCCccccCCCCCcccccccccceeeecChhH
Confidence 9999998888777 89999999997521 1111 11222225899999999975
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.3e-41 Score=313.08 Aligned_cols=306 Identities=20% Similarity=0.305 Sum_probs=236.0
Q ss_pred ccccceeeeecCC-CCCCCCCCCcccceeeeCCEEEEEccccCC-CCCCCceEEEEeccCcccccceEEcCCCCCCC---
Q 016774 18 LESVSCRNISDAD-GDLVLPNPRASHSLNFVSNCLVLFGGGCEG-GRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSG--- 92 (383)
Q Consensus 18 ~~~~~W~~~~~~~-~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~--- 92 (383)
+....|.++...+ .. |.||.+|++++++++|||+||.... ....+++|+||+..+ +|++++...+.+
T Consensus 4 ~~~~~W~~~~~~~~~~---P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~p~~~ 75 (341)
T PLN02153 4 TLQGGWIKVEQKGGKG---PGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTH-----TWSIAPANGDVPRIS 75 (341)
T ss_pred ccCCeEEEecCCCCCC---CCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCC-----EEEEcCccCCCCCCc
Confidence 3567899997653 34 8999999999999999999997543 334579999999655 999886433223
Q ss_pred CcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCC--CCCCccccceeEEECCcEEEEEccc
Q 016774 93 RFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGS--IAPPARGAHAACCIDNRKMVIHAGI 170 (383)
Q Consensus 93 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~--~~p~~r~~~~~~~~~~~~i~v~GG~ 170 (383)
+.+|++++++++||||||... ...++++++||+ .+++|+.+...+ ..|.+|..|+++..++ +|||+||.
T Consensus 76 ~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~-------~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iyv~GG~ 146 (341)
T PLN02153 76 CLGVRMVAVGTKLYIFGGRDE-KREFSDFYSYDT-------VKNEWTFLTKLDEEGGPEARTFHSMASDEN-HVYVFGGV 146 (341)
T ss_pred cCceEEEEECCEEEEECCCCC-CCccCcEEEEEC-------CCCEEEEeccCCCCCCCCCceeeEEEEECC-EEEEECCc
Confidence 447999999999999999864 345789999999 699999886532 2478999999988777 99999998
Q ss_pred CCCC-----CcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCC-------CCccccEEE
Q 016774 171 GLYG-----LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVG-------YEVLNDVWF 237 (383)
Q Consensus 171 ~~~~-----~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~-------~~~~~~v~~ 237 (383)
...+ ..++++++||+.++ +|++++ ....|.+|.+|+++.+ +++|||+||.... ....+++++
T Consensus 147 ~~~~~~~~~~~~~~v~~yd~~~~----~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~ 221 (341)
T PLN02153 147 SKGGLMKTPERFRTIEAYNIADG----KWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQF 221 (341)
T ss_pred cCCCccCCCcccceEEEEECCCC----eEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEE
Confidence 5432 23578999999999 999998 3334578999999888 5999999986421 123578999
Q ss_pred EEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC--------CCCCCCcEEEEEcCCCccccccc
Q 016774 238 LDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTSVQQ 309 (383)
Q Consensus 238 ~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~~~d~~~~~~~~~~~ 309 (383)
||+.+ ++|+++. ..+..|.+|..|++++ .+++|||+||... .....+++|+||++
T Consensus 222 yd~~~--~~W~~~~-----~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--------- 284 (341)
T PLN02153 222 FDPAS--GKWTEVE-----TTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--------- 284 (341)
T ss_pred EEcCC--CcEEecc-----ccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEEEEEcC---------
Confidence 99999 9999995 4456799999999886 8999999999742 23346799999998
Q ss_pred ccccccccccccceeeccCCC--CCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEEee
Q 016774 310 SMLDSRGLLLNMWKRLRAEGY--KPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 380 (383)
Q Consensus 310 ~~~~~~~~~~~~W~~~~~~~~--~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (383)
+.+|+.+...+. +|.+|..++++.+...++|||+||..+.. +..+|+|.+++-
T Consensus 285 ---------~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~---------~~~~~~~~~~~~ 339 (341)
T PLN02153 285 ---------TLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTN---------ERTDDLYFYAVN 339 (341)
T ss_pred ---------ccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCC---------ccccceEEEecc
Confidence 678998865433 44555556677776667999999996642 223678887653
No 4
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=5.2e-38 Score=277.33 Aligned_cols=259 Identities=25% Similarity=0.412 Sum_probs=217.3
Q ss_pred CCCCCCcceeEEEECCE--EEEEcCccCCCC---CccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCc
Q 016774 88 GIPSGRFGHTCVVIGDC--LVLFGGINDRGN---RHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNR 162 (383)
Q Consensus 88 ~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~---~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 162 (383)
.+|++|...++++...+ |++|||...+++ ..|++|.|++ .+++|+++...+ .|+||.+|.++++..+
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~-------k~~eWkk~~spn-~P~pRsshq~va~~s~ 133 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNT-------KKNEWKKVVSPN-APPPRSSHQAVAVPSN 133 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEec-------cccceeEeccCC-CcCCCccceeEEeccC
Confidence 47889999999987544 999999876554 4799999999 799999998765 8999999999999877
Q ss_pred EEEEEcccCCCC-----CcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCC---CCCcccc
Q 016774 163 KMVIHAGIGLYG-----LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGV---GYEVLND 234 (383)
Q Consensus 163 ~i~v~GG~~~~~-----~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~---~~~~~~~ 234 (383)
.+|+|||.-... -...|+|.||+.++ +|+++.....|.+|.+|-+++. .++|+||||+.+ ...++||
T Consensus 134 ~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr----kweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyND 208 (521)
T KOG1230|consen 134 ILWLFGGEFASPNQEQFHHYKDLWLFDLKTR----KWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYND 208 (521)
T ss_pred eEEEeccccCCcchhhhhhhhheeeeeeccc----hheeeccCCCCCCCccceeEEe-eeeEEEEcceecCCCceEEeee
Confidence 999999963322 13679999999999 9999997789999999999999 599999999843 3347999
Q ss_pred EEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC--------CCCCCCcEEEEEcCCCcccc
Q 016774 235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTS 306 (383)
Q Consensus 235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~~~d~~~~~~~~ 306 (383)
||+||+++ .+|+++. +++..|.||.+|+..+..++.|||+||++. .+...+|+|.++++...
T Consensus 209 vy~FdLdt--ykW~Kle-----psga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~--- 278 (521)
T KOG1230|consen 209 VYAFDLDT--YKWSKLE-----PSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGR--- 278 (521)
T ss_pred eEEEeccc--eeeeecc-----CCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCC---
Confidence 99999999 9999996 677789999999999877999999999963 25567999999998421
Q ss_pred cccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEEeec
Q 016774 307 VQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP 381 (383)
Q Consensus 307 ~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (383)
+. ...|+++.+.|..|.||.+++.++.. .++-+.|||.-+-... .++....|.+||+.||++.
T Consensus 279 ---------~d-Kw~W~kvkp~g~kPspRsgfsv~va~-n~kal~FGGV~D~eee-eEsl~g~F~NDLy~fdlt~ 341 (521)
T KOG1230|consen 279 ---------ED-KWVWTKVKPSGVKPSPRSGFSVAVAK-NHKALFFGGVCDLEEE-EESLSGEFFNDLYFFDLTR 341 (521)
T ss_pred ---------Cc-ceeEeeccCCCCCCCCCCceeEEEec-CCceEEecceeccccc-chhhhhhhhhhhhheeccc
Confidence 11 57899999999999999999998885 4589999999663333 4555558999999999863
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3e-36 Score=290.59 Aligned_cols=293 Identities=18% Similarity=0.259 Sum_probs=222.4
Q ss_pred ccceeeeCCEEEEEccccCCCCCCCceEEEEecc-CcccccceEEcCC--CCCCCCcceeEEEECCEEEEEcCccCCCC-
Q 016774 41 SHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGN-DFQGMLKWQKVNS--GIPSGRFGHTCVVIGDCLVLFGGINDRGN- 116 (383)
Q Consensus 41 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~- 116 (383)
+...+..+++|+.|+|.... .++.+-.|..+. ......+|.++.. ..|.+|.+|++++++++|||+||......
T Consensus 113 g~~f~~~~~~ivgf~G~~~~--~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~ 190 (470)
T PLN02193 113 GVKFVLQGGKIVGFHGRSTD--VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQP 190 (470)
T ss_pred CCEEEEcCCeEEEEeccCCC--cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCC
Confidence 34444457899999996433 244443442221 1112359999864 35889999999999999999999854333
Q ss_pred CccceeeeecccccCCcccccEEEccCCCCCCCc-cccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceE
Q 016774 117 RHNDTWIGQIACHENLGITLSWRLLDVGSIAPPA-RGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQ 195 (383)
Q Consensus 117 ~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~-r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~ 195 (383)
..+++|+||+ .+++|+.++..+..|.+ |.+|+++.+++ +|||+||.... ..++++|+||+.++ +|+
T Consensus 191 ~~~~v~~yD~-------~~~~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~-~~~ndv~~yD~~t~----~W~ 257 (470)
T PLN02193 191 IDKHLYVFDL-------ETRTWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDAS-RQYNGFYSFDTTTN----EWK 257 (470)
T ss_pred eeCcEEEEEC-------CCCEEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCC-CCCccEEEEECCCC----EEE
Confidence 4578999999 68999988766555553 56788888877 99999998543 46899999999999 999
Q ss_pred Ecc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEc
Q 016774 196 QLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLIL 274 (383)
Q Consensus 196 ~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~ 274 (383)
+++ ....|.+|..|+++.+ +++|||+||.. ....+++++.||+.+ ++|+.++ ..+..|.+|.+|++++ .
T Consensus 258 ~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~-~~~~~~~~~~yd~~t--~~W~~~~-----~~~~~~~~R~~~~~~~-~ 327 (470)
T PLN02193 258 LLTPVEEGPTPRSFHSMAAD-EENVYVFGGVS-ATARLKTLDSYNIVD--KKWFHCS-----TPGDSFSIRGGAGLEV-V 327 (470)
T ss_pred EcCcCCCCCCCccceEEEEE-CCEEEEECCCC-CCCCcceEEEEECCC--CEEEeCC-----CCCCCCCCCCCcEEEE-E
Confidence 997 2334889999999988 59999999985 344678999999999 9999985 3445778899998886 7
Q ss_pred CCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcC
Q 016774 275 GGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGG 354 (383)
Q Consensus 275 ~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG 354 (383)
+++||++||.++. ..+++++||+. +.+|+++.+.+..|.+|..|+++.+ +++|||+||
T Consensus 328 ~gkiyviGG~~g~--~~~dv~~yD~~------------------t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG 385 (470)
T PLN02193 328 QGKVWVVYGFNGC--EVDDVHYYDPV------------------QDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGG 385 (470)
T ss_pred CCcEEEEECCCCC--ccCceEEEECC------------------CCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECC
Confidence 8999999998753 36899999998 7899999877778999999999888 789999999
Q ss_pred ccCCccccCCCccccccCeeeEEEeec
Q 016774 355 MVDGLVQPADTSGLRFDGRLLLVELVP 381 (383)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (383)
......... ...-.+.+|+|.||+..
T Consensus 386 ~~~~~~~~~-~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 386 EIAMDPLAH-VGPGQLTDGTFALDTET 411 (470)
T ss_pred ccCCccccc-cCccceeccEEEEEcCc
Confidence 964221111 11113556788887653
No 6
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=292.55 Aligned_cols=276 Identities=33% Similarity=0.587 Sum_probs=239.8
Q ss_pred CCCCcccceeeeCCEEEEEccccCCCCCCC-ceEEEEeccCcccccceEEcC--CCCCCCCcceeEEEECCEEEEEcCcc
Q 016774 36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLD-DTWVAYVGNDFQGMLKWQKVN--SGIPSGRFGHTCVVIGDCLVLFGGIN 112 (383)
Q Consensus 36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~-~~~~~~~~~~~~~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~ 112 (383)
|.+|++|+++.+++++|||||........+ |+|+++.... .|.... ...|.+|++|+++.++++||+|||..
T Consensus 58 p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~-----~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 58 PIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQ-----LWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred cchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCc-----ccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 999999999999999999999766544433 6999999554 898753 45688999999999999999999998
Q ss_pred CCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccC
Q 016774 113 DRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFG 192 (383)
Q Consensus 113 ~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~ 192 (383)
.....+++++.||+ .+.+|..+...+.+|++|.+|+++..++ ++|||||.+..+...+++|+||+.+.
T Consensus 133 ~~~~~~~~l~~~d~-------~t~~W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~ndl~i~d~~~~---- 200 (482)
T KOG0379|consen 133 KKYRNLNELHSLDL-------STRTWSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLNDLHIYDLETS---- 200 (482)
T ss_pred CCCCChhheEeccC-------CCCcEEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceeeeeeeccccc----
Confidence 65666899999999 5999999999998999999999999997 99999999877668999999999998
Q ss_pred ceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEE
Q 016774 193 SWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSAT 271 (383)
Q Consensus 193 ~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~ 271 (383)
+|+++. .++.|.||.+|+++++ +++++|+||.+....+++|+|.||+.+ ..|.++. ..+..|.+|++|+.+
T Consensus 201 ~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~--~~W~~~~-----~~g~~p~~R~~h~~~ 272 (482)
T KOG0379|consen 201 TWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLST--WEWKLLP-----TGGDLPSPRSGHSLT 272 (482)
T ss_pred cceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeeccc--ceeeecc-----ccCCCCCCcceeeeE
Confidence 999999 7788999999999999 588898888876778999999999999 9999874 789999999999999
Q ss_pred EEcCCEEEEEcCcCCCCC-CCCcEEEEEcCCCcccccccccccccccccccceeeccCC-CCCCCccceeeeecCCC--c
Q 016774 272 LILGGRVLIYGGEDSARR-RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEG-YKPNCRSFHRACPDYSG--R 347 (383)
Q Consensus 272 ~~~~~~l~i~GG~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~~p~~r~~~~~~~~~~~--~ 347 (383)
+ .+.+++|+||...... .+.++|.|+++ +..|..+...+ ..|.+|..|.++..... .
T Consensus 273 ~-~~~~~~l~gG~~~~~~~~l~~~~~l~~~------------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
T KOG0379|consen 273 V-SGDHLLLFGGGTDPKQEPLGDLYGLDLE------------------TLVWSKVESVGVVRPSPRLGHAAELIDELGKD 333 (482)
T ss_pred E-ECCEEEEEcCCccccccccccccccccc------------------ccceeeeeccccccccccccccceeeccCCcc
Confidence 4 9999999999977533 68899999998 67899988766 77889999888877333 3
Q ss_pred EEEEEcCc
Q 016774 348 YLYVFGGM 355 (383)
Q Consensus 348 ~l~v~GG~ 355 (383)
.+.++||.
T Consensus 334 ~~~~~~~~ 341 (482)
T KOG0379|consen 334 GLGILGGN 341 (482)
T ss_pred ceeeecCc
Confidence 56666764
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.7e-35 Score=274.16 Aligned_cols=260 Identities=22% Similarity=0.337 Sum_probs=199.6
Q ss_pred cccceEEcCC---CCCCCCcceeEEEECCEEEEEcCccCC-CCCccceeeeecccccCCcccccEEEccCCCCCCCc-cc
Q 016774 78 GMLKWQKVNS---GIPSGRFGHTCVVIGDCLVLFGGINDR-GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPA-RG 152 (383)
Q Consensus 78 ~~~~W~~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~-r~ 152 (383)
...+|.++.. ..|.+|.+|++++++++|||+||.... ....+++++||+ .+++|+++.+.+..|.. +.
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~-------~~~~W~~~~~~~~~p~~~~~ 77 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDF-------NTHTWSIAPANGDVPRISCL 77 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEEC-------CCCEEEEcCccCCCCCCccC
Confidence 3448998864 268899999999999999999998543 334689999999 68999998765434443 34
Q ss_pred cceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEccc---CCCCCCCCCceEEEEcCCEEEEEcccCCCC
Q 016774 153 AHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVT---HPSPPARSGHSLTRIGGNRTVLFGGRGVGY 229 (383)
Q Consensus 153 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~---~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~ 229 (383)
+|+++.+++ +||+|||.... ..++++++||+.++ +|+.++. ...|.+|..|+++.. +++|||+||.....
T Consensus 78 ~~~~~~~~~-~iyv~GG~~~~-~~~~~v~~yd~~t~----~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~ 150 (341)
T PLN02153 78 GVRMVAVGT-KLYIFGGRDEK-REFSDFYSYDTVKN----EWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGG 150 (341)
T ss_pred ceEEEEECC-EEEEECCCCCC-CccCcEEEEECCCC----EEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCC
Confidence 677888887 99999998544 35789999999998 9999872 123889999999988 59999999985321
Q ss_pred -----CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC-------CCCCCcEEEE
Q 016774 230 -----EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-------RRRKDDFWVL 297 (383)
Q Consensus 230 -----~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~-------~~~~~~~~~~ 297 (383)
..++++++||+.+ ++|+.++ ..+..|.+|.+|++++ .+++|||+||.... ....+++++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~--~~W~~l~-----~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~y 222 (341)
T PLN02153 151 LMKTPERFRTIEAYNIAD--GKWVQLP-----DPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFF 222 (341)
T ss_pred ccCCCcccceEEEEECCC--CeEeeCC-----CCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEE
Confidence 2457899999999 9999985 3444568899998886 89999999997521 1225789999
Q ss_pred EcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEE
Q 016774 298 DTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLV 377 (383)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~ 377 (383)
|++ +.+|+++...+.+|.+|..|+++++ +++||||||....... .+.....+.+++|.|
T Consensus 223 d~~------------------~~~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~~~-~~~~~~~~~n~v~~~ 281 (341)
T PLN02153 223 DPA------------------SGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPDLK-GHLGPGTLSNEGYAL 281 (341)
T ss_pred EcC------------------CCcEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCccc-cccccccccccEEEE
Confidence 988 7899999877788999999999888 7899999998532221 111112345677777
Q ss_pred Eee
Q 016774 378 ELV 380 (383)
Q Consensus 378 ~~~ 380 (383)
|++
T Consensus 282 d~~ 284 (341)
T PLN02153 282 DTE 284 (341)
T ss_pred EcC
Confidence 764
No 8
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=4.1e-35 Score=271.04 Aligned_cols=273 Identities=16% Similarity=0.243 Sum_probs=204.5
Q ss_pred CCCcccceeeeCCEEEEEccccCCCC---------CCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEE
Q 016774 37 NPRASHSLNFVSNCLVLFGGGCEGGR---------HLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVL 107 (383)
Q Consensus 37 ~~r~~~~~~~~~~~i~v~GG~~~~~~---------~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv 107 (383)
..++++.++++++.|||+||...+.. ..+++++++. . ....+|..+. .+|.+|..+++++++++||+
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~-~--~~~~~W~~~~-~lp~~r~~~~~~~~~~~lyv 77 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKD-E--NSNLKWVKDG-QLPYEAAYGASVSVENGIYY 77 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEec-C--CCceeEEEcc-cCCccccceEEEEECCEEEE
Confidence 36788999999999999999865532 3457777762 1 1234799887 47889988888999999999
Q ss_pred EcCccCCCCCccceeeeecccccCCcccccEE-EccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEecc
Q 016774 108 FGGINDRGNRHNDTWIGQIACHENLGITLSWR-LLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELS 186 (383)
Q Consensus 108 ~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~ 186 (383)
+||... ...++++++||+ .+.+|+ +....+.+|.+|..|+++.+++ +|||+||.. .+..++++++||+.
T Consensus 78 iGG~~~-~~~~~~v~~~d~-------~~~~w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG~~-~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 78 IGGSNS-SERFSSVYRITL-------DESKEELICETIGNLPFTFENGSACYKDG-TLYVGGGNR-NGKPSNKSYLFNLE 147 (323)
T ss_pred EcCCCC-CCCceeEEEEEE-------cCCceeeeeeEcCCCCcCccCceEEEECC-EEEEEeCcC-CCccCceEEEEcCC
Confidence 999864 445789999999 477772 1122233788999999988887 999999974 33457899999999
Q ss_pred CCcccCceEEcccCCCC-CCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCc
Q 016774 187 ENFCFGSWQQLVTHPSP-PARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPR 265 (383)
Q Consensus 187 ~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r 265 (383)
++ +|++++ ++| .+|..|+++.+ +++|||+||... ....++++||+.+ ++|+.+... .....|..+
T Consensus 148 ~~----~W~~~~--~~p~~~r~~~~~~~~-~~~iYv~GG~~~--~~~~~~~~yd~~~--~~W~~~~~~---~~~~~p~~~ 213 (323)
T TIGR03548 148 TQ----EWFELP--DFPGEPRVQPVCVKL-QNELYVFGGGSN--IAYTDGYKYSPKK--NQWQKVADP---TTDSEPISL 213 (323)
T ss_pred CC----CeeECC--CCCCCCCCcceEEEE-CCEEEEEcCCCC--ccccceEEEecCC--CeeEECCCC---CCCCCceec
Confidence 99 999997 555 47888888888 599999999853 2346789999999 999998410 011234445
Q ss_pred eeeEEEEEcCCEEEEEcCcCCCC-------------------------------CCCCcEEEEEcCCCcccccccccccc
Q 016774 266 VGHSATLILGGRVLIYGGEDSAR-------------------------------RRKDDFWVLDTKAIPFTSVQQSMLDS 314 (383)
Q Consensus 266 ~~~~~~~~~~~~l~i~GG~~~~~-------------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~ 314 (383)
.+++++++.+++||++||.+... ...+++++||++
T Consensus 214 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~-------------- 279 (323)
T TIGR03548 214 LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR-------------- 279 (323)
T ss_pred cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC--------------
Confidence 55665555789999999987421 012567777777
Q ss_pred cccccccceeeccCCCCC-CCccceeeeecCCCcEEEEEcCccCCcc
Q 016774 315 RGLLLNMWKRLRAEGYKP-NCRSFHRACPDYSGRYLYVFGGMVDGLV 360 (383)
Q Consensus 315 ~~~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~~~l~v~GG~~~~~~ 360 (383)
+++|+.+.. +| .+|.+++++.+ +++||++||.....+
T Consensus 280 ----~~~W~~~~~---~p~~~r~~~~~~~~--~~~iyv~GG~~~pg~ 317 (323)
T TIGR03548 280 ----TGKWKSIGN---SPFFARCGAALLLT--GNNIFSINGELKPGV 317 (323)
T ss_pred ----CCeeeEccc---ccccccCchheEEE--CCEEEEEeccccCCc
Confidence 789998864 55 58888888877 889999999865443
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5.7e-35 Score=272.88 Aligned_cols=266 Identities=18% Similarity=0.257 Sum_probs=198.5
Q ss_pred CCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCC-CCCcceeEEEECCEEEEEcCccC
Q 016774 35 LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIP-SGRFGHTCVVIGDCLVLFGGIND 113 (383)
Q Consensus 35 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~ 113 (383)
+|.||..+++++++++|||+||.. .++++++++.. .+.+|.+++. +| .+|..|++++++++|||+||...
T Consensus 4 lp~~~~~~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~---~~~~W~~l~~-~p~~~R~~~~~~~~~~~iYv~GG~~~ 74 (346)
T TIGR03547 4 LPVGFKNGTGAIIGDKVYVGLGSA-----GTSWYKLDLKK---PSKGWQKIAD-FPGGPRNQAVAAAIDGKLYVFGGIGK 74 (346)
T ss_pred CCccccCceEEEECCEEEEEcccc-----CCeeEEEECCC---CCCCceECCC-CCCCCcccceEEEECCEEEEEeCCCC
Confidence 388999999989999999999952 25788888632 3348999974 55 58999999999999999999853
Q ss_pred CC-----CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC--------------
Q 016774 114 RG-----NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG-------------- 174 (383)
Q Consensus 114 ~~-----~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~-------------- 174 (383)
.. ..++++++||+ .+++|+++.. ..|.+|.+|+++...+++||++||.+...
T Consensus 75 ~~~~~~~~~~~~v~~Yd~-------~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 145 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDP-------KKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKD 145 (346)
T ss_pred CCCCCcceecccEEEEEC-------CCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCcc
Confidence 22 24788999999 6999999863 25677778877733444999999975210
Q ss_pred -------------------CcccceEEEeccCCcccCceEEcccCCCCC-CCCCceEEEEcCCEEEEEcccCCCCCcccc
Q 016774 175 -------------------LRLGDTWVLELSENFCFGSWQQLVTHPSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLND 234 (383)
Q Consensus 175 -------------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~ 234 (383)
..++++++||+.++ +|+.++ ++|. +|..|+++.+ +++|||+||.........+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~----~W~~~~--~~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 218 (346)
T TIGR03547 146 SEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN----QWRNLG--ENPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAE 218 (346)
T ss_pred chhhhhhHHHHhCCChhHcCccceEEEEECCCC----ceeECc--cCCCCcCCCceEEEE-CCEEEEEeeeeCCCccchh
Confidence 01378999999999 999997 6675 6888888888 5999999998533333356
Q ss_pred EEEEEcccCccceEEecccccCCCCCCCCCc-------eeeEEEEEcCCEEEEEcCcCCCCC----------------CC
Q 016774 235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPR-------VGHSATLILGGRVLIYGGEDSARR----------------RK 291 (383)
Q Consensus 235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r-------~~~~~~~~~~~~l~i~GG~~~~~~----------------~~ 291 (383)
++.|+++.+.++|+.+. .+|.+| .+|++++ .+++||++||.+.... ..
T Consensus 219 ~~~y~~~~~~~~W~~~~--------~m~~~r~~~~~~~~~~~a~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 289 (346)
T TIGR03547 219 VKQYLFTGGKLEWNKLP--------PLPPPKSSSQEGLAGAFAGI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKA 289 (346)
T ss_pred eEEEEecCCCceeeecC--------CCCCCCCCccccccEEeeeE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCce
Confidence 77776643227999983 455544 4555554 8999999999863211 11
Q ss_pred CcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774 292 DDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD 357 (383)
Q Consensus 292 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~ 357 (383)
..+.+||++ +++|+.+.+ +|.+|..++++++ +++|||+||...
T Consensus 290 ~~~e~yd~~------------------~~~W~~~~~---lp~~~~~~~~~~~--~~~iyv~GG~~~ 332 (346)
T TIGR03547 290 WSSEVYALD------------------NGKWSKVGK---LPQGLAYGVSVSW--NNGVLLIGGENS 332 (346)
T ss_pred eEeeEEEec------------------CCcccccCC---CCCCceeeEEEEc--CCEEEEEeccCC
Confidence 245667766 789998865 8889988877666 899999999854
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5e-35 Score=285.58 Aligned_cols=260 Identities=23% Similarity=0.332 Sum_probs=226.7
Q ss_pred CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCC
Q 016774 36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRG 115 (383)
Q Consensus 36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 115 (383)
+.+|....- ...+.||++||........+.+..|++..+ +|..+. .+|.+|..+++++++++||++||.+.+.
T Consensus 273 ~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-----~w~~~a-~m~~~r~~~~~~~~~~~lYv~GG~~~~~ 345 (571)
T KOG4441|consen 273 QSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTN-----EWSSLA-PMPSPRCRVGVAVLNGKLYVVGGYDSGS 345 (571)
T ss_pred cCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcC-----cEeecC-CCCcccccccEEEECCEEEEEccccCCC
Confidence 445544443 566899999997765677888899999655 999998 4889999999999999999999997545
Q ss_pred CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceE
Q 016774 116 NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQ 195 (383)
Q Consensus 116 ~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~ 195 (383)
..++.+++||+ .+++|..+++ +..+|..++++.+++ .||+.||.+.. ..++.+.+||+.++ +|+
T Consensus 346 ~~l~~ve~YD~-------~~~~W~~~a~---M~~~R~~~~v~~l~g-~iYavGG~dg~-~~l~svE~YDp~~~----~W~ 409 (571)
T KOG4441|consen 346 DRLSSVERYDP-------RTNQWTPVAP---MNTKRSDFGVAVLDG-KLYAVGGFDGE-KSLNSVECYDPVTN----KWT 409 (571)
T ss_pred cccceEEEecC-------CCCceeccCC---ccCccccceeEEECC-EEEEEeccccc-cccccEEEecCCCC----ccc
Confidence 67899999999 5889999877 779999999999998 99999999633 57889999999999 999
Q ss_pred EcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcC
Q 016774 196 QLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILG 275 (383)
Q Consensus 196 ~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~ 275 (383)
.+. +++.+|.+|+++.+ +++||++||.+.....++.+.+||+.+ ++|+.+ ..++.+|.++++++ .+
T Consensus 410 ~va--~m~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t--~~W~~~--------~~M~~~R~~~g~a~-~~ 475 (571)
T KOG4441|consen 410 PVA--PMLTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPET--NTWTLI--------APMNTRRSGFGVAV-LN 475 (571)
T ss_pred ccC--CCCcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCC--Cceeec--------CCcccccccceEEE-EC
Confidence 998 78889999999999 599999999976666899999999999 999999 68999999999887 99
Q ss_pred CEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCc
Q 016774 276 GRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM 355 (383)
Q Consensus 276 ~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~ 355 (383)
++||++||+++ ....+.+.+||++ +++|+.+.+ ++.+|..++++++ ++++|++||.
T Consensus 476 ~~iYvvGG~~~-~~~~~~VE~ydp~------------------~~~W~~v~~---m~~~rs~~g~~~~--~~~ly~vGG~ 531 (571)
T KOG4441|consen 476 GKIYVVGGFDG-TSALSSVERYDPE------------------TNQWTMVAP---MTSPRSAVGVVVL--GGKLYAVGGF 531 (571)
T ss_pred CEEEEECCccC-CCccceEEEEcCC------------------CCceeEccc---CccccccccEEEE--CCEEEEEecc
Confidence 99999999998 5557779999998 789999955 8899999999888 8999999996
Q ss_pred c
Q 016774 356 V 356 (383)
Q Consensus 356 ~ 356 (383)
.
T Consensus 532 ~ 532 (571)
T KOG4441|consen 532 D 532 (571)
T ss_pred c
Confidence 3
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.1e-35 Score=285.54 Aligned_cols=252 Identities=19% Similarity=0.301 Sum_probs=222.9
Q ss_pred hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCC
Q 016774 14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGR 93 (383)
Q Consensus 14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r 93 (383)
+.|++.+++|..++.. |.+|..+++++++++||++||.+.+...++.+++||...+ +|++++ .++.+|
T Consensus 304 e~yd~~~~~w~~~a~m------~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~-----~W~~~a-~M~~~R 371 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPM------PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN-----QWTPVA-PMNTKR 371 (571)
T ss_pred EEecCCcCcEeecCCC------CcccccccEEEECCEEEEEccccCCCcccceEEEecCCCC-----ceeccC-CccCcc
Confidence 5789999999999876 7899999999999999999997656678899999999665 899987 489999
Q ss_pred cceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCC
Q 016774 94 FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLY 173 (383)
Q Consensus 94 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~ 173 (383)
.+++++++++.||++||.+ +...++.+++||+ .+++|+.+.+ ++.+|++|+++..++ +||++||.+..
T Consensus 372 ~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp-------~~~~W~~va~---m~~~r~~~gv~~~~g-~iYi~GG~~~~ 439 (571)
T KOG4441|consen 372 SDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDP-------VTNKWTPVAP---MLTRRSGHGVAVLGG-KLYIIGGGDGS 439 (571)
T ss_pred ccceeEEECCEEEEEeccc-cccccccEEEecC-------CCCcccccCC---CCcceeeeEEEEECC-EEEEEcCcCCC
Confidence 9999999999999999987 4566889999999 6999999877 667999999999988 99999998655
Q ss_pred CCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEeccc
Q 016774 174 GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYE 253 (383)
Q Consensus 174 ~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~ 253 (383)
...++.+.+||+.++ +|+.++ +++.+|.+|.++++ +++||++||.+. ......+.+||+.+ ++|+.+
T Consensus 440 ~~~l~sve~YDP~t~----~W~~~~--~M~~~R~~~g~a~~-~~~iYvvGG~~~-~~~~~~VE~ydp~~--~~W~~v--- 506 (571)
T KOG4441|consen 440 SNCLNSVECYDPETN----TWTLIA--PMNTRRSGFGVAVL-NGKIYVVGGFDG-TSALSSVERYDPET--NQWTMV--- 506 (571)
T ss_pred ccccceEEEEcCCCC----ceeecC--CcccccccceEEEE-CCEEEEECCccC-CCccceEEEEcCCC--CceeEc---
Confidence 558999999999999 999999 89999999999999 699999999975 55667799999999 999999
Q ss_pred ccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeecc
Q 016774 254 LQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA 327 (383)
Q Consensus 254 ~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 327 (383)
..++.+|..+++++ .++++|++||+++. ..++.+..||++ +++|+.+..
T Consensus 507 -----~~m~~~rs~~g~~~-~~~~ly~vGG~~~~-~~l~~ve~ydp~------------------~d~W~~~~~ 555 (571)
T KOG4441|consen 507 -----APMTSPRSAVGVVV-LGGKLYAVGGFDGN-NNLNTVECYDPE------------------TDTWTEVTE 555 (571)
T ss_pred -----ccCccccccccEEE-ECCEEEEEecccCc-cccceeEEcCCC------------------CCceeeCCC
Confidence 67888888888776 99999999998874 457888888887 789998854
No 12
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=248.68 Aligned_cols=246 Identities=22% Similarity=0.359 Sum_probs=209.5
Q ss_pred hccccccceeeeec-------CCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEc--
Q 016774 15 VTQLESVSCRNISD-------ADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKV-- 85 (383)
Q Consensus 15 ~~~~~~~~W~~~~~-------~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-- 85 (383)
+++..+..|.++++ ..+...+|..|.+|+.+.+++++||+||.++....++-++.||+ +++.|++.
T Consensus 48 ~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp-----~t~~W~~p~v 122 (392)
T KOG4693|consen 48 VLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDP-----ETNVWKKPEV 122 (392)
T ss_pred EeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecc-----ccccccccce
Confidence 44567788988755 12333457889999999999999999999888888898999998 45599975
Q ss_pred CCCCCCCCcceeEEEECCEEEEEcCccCC-CCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEE
Q 016774 86 NSGIPSGRFGHTCVVIGDCLVLFGGINDR-GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKM 164 (383)
Q Consensus 86 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i 164 (383)
++..|.+|.+|++|++++..|||||..+. ....++++++|+ .+.+|..+.+.+.+|.-|..|+++.++. .+
T Consensus 123 ~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~-------~TmtWr~~~Tkg~PprwRDFH~a~~~~~-~M 194 (392)
T KOG4693|consen 123 EGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDF-------ATMTWREMHTKGDPPRWRDFHTASVIDG-MM 194 (392)
T ss_pred eeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEec-------cceeeeehhccCCCchhhhhhhhhhccc-eE
Confidence 45689999999999999999999998654 345789999999 6999999999999999999999999986 99
Q ss_pred EEEcccCCCC--------CcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCC-CCcccc
Q 016774 165 VIHAGIGLYG--------LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVG-YEVLND 234 (383)
Q Consensus 165 ~v~GG~~~~~--------~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~-~~~~~~ 234 (383)
|||||..+.. ..-+.+..+|+.|+ .|...+ ....|..|..|++..+ +++||||||.+.. ..-++|
T Consensus 195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~----aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~Hfnd 269 (392)
T KOG4693|consen 195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATG----AWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFND 269 (392)
T ss_pred EEeccccccCCCccchhhhhcceeEEEecccc----ccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcc
Confidence 9999986432 23567889999999 999988 5567899999999999 6999999999532 235789
Q ss_pred EEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC
Q 016774 235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS 286 (383)
Q Consensus 235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~ 286 (383)
+|.||+.+ ..|+.|. ..+..|.+|+.+|+++ .++++|+|||.+.
T Consensus 270 Ly~FdP~t--~~W~~I~-----~~Gk~P~aRRRqC~~v-~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 270 LYCFDPKT--SMWSVIS-----VRGKYPSARRRQCSVV-SGGKVYLFGGTSP 313 (392)
T ss_pred eeeccccc--chheeee-----ccCCCCCcccceeEEE-ECCEEEEecCCCC
Confidence 99999999 9999996 7899999999999997 9999999999864
No 13
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=284.32 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=209.0
Q ss_pred hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCC
Q 016774 14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGR 93 (383)
Q Consensus 14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r 93 (383)
..|++.+.+|..+++. |.+|..+++++++++|||+||........+++++|++..+ +|..+++ +|.+|
T Consensus 275 ~~yd~~~~~W~~l~~m------p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-----~W~~~~~-m~~~R 342 (557)
T PHA02713 275 LVYNINTMEYSVISTI------PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENK-----IHVELPP-MIKNR 342 (557)
T ss_pred EEEeCCCCeEEECCCC------CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCC-----eEeeCCC-Ccchh
Confidence 4589999999999754 7789999999999999999996544455788999999655 9999874 78899
Q ss_pred cceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCC
Q 016774 94 FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLY 173 (383)
Q Consensus 94 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~ 173 (383)
..+++++++++||++||.+. ....+++++||+ .+++|+.+++ +|.+|..|+++..++ +||++||.+..
T Consensus 343 ~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp-------~~~~W~~~~~---mp~~r~~~~~~~~~g-~IYviGG~~~~ 410 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNG-TNVERTIECYTM-------GDDKWKMLPD---MPIALSSYGMCVLDQ-YIYIIGGRTEH 410 (557)
T ss_pred hceeEEEECCEEEEECCcCC-CCCCceEEEEEC-------CCCeEEECCC---CCcccccccEEEECC-EEEEEeCCCcc
Confidence 99999999999999999854 345778999999 6999999876 889999999988877 99999997532
Q ss_pred C-----------------CcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEE
Q 016774 174 G-----------------LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 236 (383)
Q Consensus 174 ~-----------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~ 236 (383)
. ..++.+++||+.++ +|+.++ +++.+|..++++++ +++||++||........+.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td----~W~~v~--~m~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve 483 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN----IWETLP--NFWTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIF 483 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCC----eEeecC--CCCcccccCcEEEE-CCEEEEEeCCCCCCccceeEE
Confidence 1 12578999999999 999998 88899999999999 599999999853333345689
Q ss_pred EEEcccCcc-ceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccccccccccccc
Q 016774 237 FLDVYEGFF-KWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSR 315 (383)
Q Consensus 237 ~~~~~~~~~-~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 315 (383)
+||+++ . +|+.+ ..+|.+|..+++++ .+++||++||.++. ..+.+||+.
T Consensus 484 ~Ydp~~--~~~W~~~--------~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~----~~~e~yd~~--------------- 533 (557)
T PHA02713 484 RYNTNT--YNGWELI--------TTTESRLSALHTIL-HDNTIMMLHCYESY----MLQDTFNVY--------------- 533 (557)
T ss_pred EecCCC--CCCeeEc--------cccCcccccceeEE-ECCEEEEEeeecce----eehhhcCcc---------------
Confidence 999996 5 89999 68999999999887 89999999999873 356677776
Q ss_pred ccccccceeecc
Q 016774 316 GLLLNMWKRLRA 327 (383)
Q Consensus 316 ~~~~~~W~~~~~ 327 (383)
+++|+.+.+
T Consensus 534 ---~~~W~~~~~ 542 (557)
T PHA02713 534 ---TYEWNHICH 542 (557)
T ss_pred ---cccccchhh
Confidence 889998755
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=9.3e-34 Score=266.71 Aligned_cols=264 Identities=19% Similarity=0.221 Sum_probs=195.9
Q ss_pred CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccC-C
Q 016774 36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGIND-R 114 (383)
Q Consensus 36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~ 114 (383)
|.||..+++++++++|||+||.. .+.++.+++.. .+.+|.+++..+..+|.+|+++.++++|||+||... .
T Consensus 26 P~~~~~~~~~~~~~~iyv~gG~~-----~~~~~~~d~~~---~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~ 97 (376)
T PRK14131 26 PVPFKNGTGAIDNNTVYVGLGSA-----GTSWYKLDLNA---PSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTN 97 (376)
T ss_pred CcCccCCeEEEECCEEEEEeCCC-----CCeEEEEECCC---CCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCC
Confidence 88998889999999999999952 23578888742 234899987433358999999999999999999864 1
Q ss_pred ----CCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC----------------
Q 016774 115 ----GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG---------------- 174 (383)
Q Consensus 115 ----~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~---------------- 174 (383)
...++++|+||+ .+++|+++.. ..|.++.+|+++.+.+++||++||.....
T Consensus 98 ~~~~~~~~~~v~~YD~-------~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~ 168 (376)
T PRK14131 98 SEGSPQVFDDVYKYDP-------KTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKT 168 (376)
T ss_pred CCCceeEcccEEEEeC-------CCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchh
Confidence 134689999999 6999999874 24677788887774455999999974210
Q ss_pred -----------------CcccceEEEeccCCcccCceEEcccCCCCC-CCCCceEEEEcCCEEEEEcccCCCCCccccEE
Q 016774 175 -----------------LRLGDTWVLELSENFCFGSWQQLVTHPSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 236 (383)
Q Consensus 175 -----------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~ 236 (383)
...+++++||+.++ +|+.+. ++|. +|..|+++.+ +++||++||.........+++
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~----~W~~~~--~~p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~ 241 (376)
T PRK14131 169 PKDKINDAYFDKKPEDYFFNKEVLSYDPSTN----QWKNAG--ESPFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVK 241 (376)
T ss_pred hhhhhHHHHhcCChhhcCcCceEEEEECCCC----eeeECC--cCCCCCCCcceEEEE-CCEEEEEeeeECCCcCChhhe
Confidence 02478999999999 999987 6674 6788888888 599999999754333345566
Q ss_pred EE--EcccCccceEEecccccCCCCCCCCCce--------eeEEEEEcCCEEEEEcCcCCCCCC-------------C--
Q 016774 237 FL--DVYEGFFKWVQIPYELQNIPAGFSLPRV--------GHSATLILGGRVLIYGGEDSARRR-------------K-- 291 (383)
Q Consensus 237 ~~--~~~~~~~~W~~i~~~~~~~~~~~p~~r~--------~~~~~~~~~~~l~i~GG~~~~~~~-------------~-- 291 (383)
.| |+++ .+|+.+. .+|.+|. ++.++ +.+++|||+||.+....+ .
T Consensus 242 ~~~~~~~~--~~W~~~~--------~~p~~~~~~~~~~~~~~~a~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 310 (376)
T PRK14131 242 QGKFTGNN--LKWQKLP--------DLPPAPGGSSQEGVAGAFAG-YSNGVLLVAGGANFPGARENYQNGKLYAHEGLKK 310 (376)
T ss_pred EEEecCCC--cceeecC--------CCCCCCcCCcCCccceEece-eECCEEEEeeccCCCCChhhhhcCCcccccCCcc
Confidence 54 5567 8999983 4555542 22234 389999999998632210 1
Q ss_pred -CcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774 292 -DDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD 357 (383)
Q Consensus 292 -~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~ 357 (383)
..+.+||++ +++|+.+.. +|.+|..++++++ +++|||+||...
T Consensus 311 ~~~~e~yd~~------------------~~~W~~~~~---lp~~r~~~~av~~--~~~iyv~GG~~~ 354 (376)
T PRK14131 311 SWSDEIYALV------------------NGKWQKVGE---LPQGLAYGVSVSW--NNGVLLIGGETA 354 (376)
T ss_pred eeehheEEec------------------CCcccccCc---CCCCccceEEEEe--CCEEEEEcCCCC
Confidence 234567776 789998754 8999998887777 889999999854
No 15
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=275.40 Aligned_cols=231 Identities=30% Similarity=0.511 Sum_probs=206.2
Q ss_pred CCCCCCCcceeEEEECCEEEEEcCccCCCCCcc-ceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEE
Q 016774 87 SGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHN-DTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMV 165 (383)
Q Consensus 87 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~ 165 (383)
...|.+|.+|+++.+++++|||||........+ ++|++|+ .+..|.+....+..|.+|++|+++.+++ +||
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~-------~~~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~ 126 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDL-------ESQLWTKPAATGDEPSPRYGHSLSAVGD-KLY 126 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeec-------CCcccccccccCCCCCcccceeEEEECC-eEE
Confidence 346889999999999999999999865443333 5999999 6899999999999999999999999998 999
Q ss_pred EEcccCCCCCcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCc
Q 016774 166 IHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGF 244 (383)
Q Consensus 166 v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~ 244 (383)
+|||.......+++++.||+.|+ +|..+. .+..|++|.+|+++.++ +++|||||.+......+++|+||+++
T Consensus 127 lfGG~~~~~~~~~~l~~~d~~t~----~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~-- 199 (482)
T KOG0379|consen 127 LFGGTDKKYRNLNELHSLDLSTR----TWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLET-- 199 (482)
T ss_pred EEccccCCCCChhheEeccCCCC----cEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeecccc--
Confidence 99998754556899999999999 999998 55679999999999995 99999999986666899999999999
Q ss_pred cceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccccccccccccccccccccee
Q 016774 245 FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKR 324 (383)
Q Consensus 245 ~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~ 324 (383)
.+|+++. ..+..|.||.+|++++ .+++++++||.+.....++|+|+||+. +..|..
T Consensus 200 ~~W~~~~-----~~g~~P~pR~gH~~~~-~~~~~~v~gG~~~~~~~l~D~~~ldl~------------------~~~W~~ 255 (482)
T KOG0379|consen 200 STWSELD-----TQGEAPSPRYGHAMVV-VGNKLLVFGGGDDGDVYLNDVHILDLS------------------TWEWKL 255 (482)
T ss_pred ccceecc-----cCCCCCCCCCCceEEE-ECCeEEEEeccccCCceecceEeeecc------------------cceeee
Confidence 9999996 7889999999999997 899999999988667789999999999 678998
Q ss_pred eccCCCCCCCccceeeeecCCCcEEEEEcCccCC
Q 016774 325 LRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDG 358 (383)
Q Consensus 325 ~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~ 358 (383)
+.+.+..|.+|++|.++.. +++++|+||..+.
T Consensus 256 ~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 256 LPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP 287 (482)
T ss_pred ccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence 8888999999999999855 8999999999775
No 16
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=274.74 Aligned_cols=247 Identities=14% Similarity=0.143 Sum_probs=203.1
Q ss_pred EEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccc
Q 016774 50 CLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACH 129 (383)
Q Consensus 50 ~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 129 (383)
.+++.||. . ......+++|++..+ +|..++ .+|.+|..|++++++++||++||........+++++||+
T Consensus 259 ~l~~~~g~-~-~~~~~~v~~yd~~~~-----~W~~l~-~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~--- 327 (557)
T PHA02713 259 CLVCHDTK-Y-NVCNPCILVYNINTM-----EYSVIS-TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINI--- 327 (557)
T ss_pred EEEEecCc-c-ccCCCCEEEEeCCCC-----eEEECC-CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEEC---
Confidence 45555552 1 122346788998555 999997 478899999999999999999997544445788999999
Q ss_pred cCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCc
Q 016774 130 ENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGH 209 (383)
Q Consensus 130 ~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~ 209 (383)
.+++|..+++ +|.+|..|+++.+++ +||++||.+.. ..++++++||+.++ +|+.++ ++|.+|..|
T Consensus 328 ----~~n~W~~~~~---m~~~R~~~~~~~~~g-~IYviGG~~~~-~~~~sve~Ydp~~~----~W~~~~--~mp~~r~~~ 392 (557)
T PHA02713 328 ----ENKIHVELPP---MIKNRCRFSLAVIDD-TIYAIGGQNGT-NVERTIECYTMGDD----KWKMLP--DMPIALSSY 392 (557)
T ss_pred ----CCCeEeeCCC---CcchhhceeEEEECC-EEEEECCcCCC-CCCceEEEEECCCC----eEEECC--CCCcccccc
Confidence 5899998876 789999999998888 99999998533 35788999999999 999998 889999999
Q ss_pred eEEEEcCCEEEEEcccCCCC-----------------CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEE
Q 016774 210 SLTRIGGNRTVLFGGRGVGY-----------------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL 272 (383)
Q Consensus 210 ~~~~~~~~~i~v~GG~~~~~-----------------~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~ 272 (383)
+++.+ +++||++||..... ...+.+++||+.+ ++|+.+ ..++.+|..+++++
T Consensus 393 ~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t--d~W~~v--------~~m~~~r~~~~~~~ 461 (557)
T PHA02713 393 GMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN--NIWETL--------PNFWTGTIRPGVVS 461 (557)
T ss_pred cEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCC--CeEeec--------CCCCcccccCcEEE
Confidence 99998 59999999985321 1257899999999 999998 57889999998886
Q ss_pred EcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccccccccccccccccc-ccceeeccCCCCCCCccceeeeecCCCcEEEE
Q 016774 273 ILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLL-NMWKRLRAEGYKPNCRSFHRACPDYSGRYLYV 351 (383)
Q Consensus 273 ~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v 351 (383)
.+++||++||.++.....+.+++||++ + ++|+.+.+ +|.+|..++++++ +++||+
T Consensus 462 -~~~~IYv~GG~~~~~~~~~~ve~Ydp~------------------~~~~W~~~~~---m~~~r~~~~~~~~--~~~iyv 517 (557)
T PHA02713 462 -HKDDIYVVCDIKDEKNVKTCIFRYNTN------------------TYNGWELITT---TESRLSALHTILH--DNTIMM 517 (557)
T ss_pred -ECCEEEEEeCCCCCCccceeEEEecCC------------------CCCCeeEccc---cCcccccceeEEE--CCEEEE
Confidence 899999999987543334557889887 6 69999865 9999999999999 899999
Q ss_pred EcCccC
Q 016774 352 FGGMVD 357 (383)
Q Consensus 352 ~GG~~~ 357 (383)
+||...
T Consensus 518 ~Gg~~~ 523 (557)
T PHA02713 518 LHCYES 523 (557)
T ss_pred Eeeecc
Confidence 999854
No 17
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.2e-33 Score=255.55 Aligned_cols=312 Identities=25% Similarity=0.421 Sum_probs=245.6
Q ss_pred ccccceeeeec-CCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEc--CCCCCCCCc
Q 016774 18 LESVSCRNISD-ADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKV--NSGIPSGRF 94 (383)
Q Consensus 18 ~~~~~W~~~~~-~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~p~~r~ 94 (383)
+....|+.+.. .++. |.||-+|.++++..-|+||||.+++ ..+++.+|+...+ +|... .++.|++..
T Consensus 14 ~~~~rWrrV~~~tGPv---PrpRHGHRAVaikELiviFGGGNEG--iiDELHvYNTatn-----qWf~PavrGDiPpgcA 83 (830)
T KOG4152|consen 14 KNVVRWRRVQQSTGPV---PRPRHGHRAVAIKELIVIFGGGNEG--IIDELHVYNTATN-----QWFAPAVRGDIPPGCA 83 (830)
T ss_pred hcccceEEEecccCCC---CCccccchheeeeeeEEEecCCccc--chhhhhhhccccc-----eeecchhcCCCCCchh
Confidence 44567998854 4555 9999999999999999999998776 4578888888554 99853 577899999
Q ss_pred ceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEcc----CCCCCCCccccceeEEECCcEEEEEccc
Q 016774 95 GHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLD----VGSIAPPARGAHAACCIDNRKMVIHAGI 170 (383)
Q Consensus 95 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~----~~~~~p~~r~~~~~~~~~~~~i~v~GG~ 170 (383)
.|.++..+++||+|||..+-+++.||+|.+..+ .-.|+++. ..+.+|.||-+|+....++ +.|+|||.
T Consensus 84 A~GfvcdGtrilvFGGMvEYGkYsNdLYELQas-------RWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGL 155 (830)
T KOG4152|consen 84 AFGFVCDGTRILVFGGMVEYGKYSNDLYELQAS-------RWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGL 155 (830)
T ss_pred hcceEecCceEEEEccEeeeccccchHHHhhhh-------hhhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEeccc
Confidence 999999999999999999999999999988773 77788876 3467899999999999997 99999997
Q ss_pred CCCC--------CcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEc-----CCEEEEEcccCCCCCccccEE
Q 016774 171 GLYG--------LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIG-----GNRTVLFGGRGVGYEVLNDVW 236 (383)
Q Consensus 171 ~~~~--------~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~-----~~~i~v~GG~~~~~~~~~~v~ 236 (383)
..+. .+++|+|+++++-+..-+.|+..- .+..|.+|-.|+++.+. ..+++|+||.. ...+.|+|
T Consensus 156 aNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~--G~RLgDLW 233 (830)
T KOG4152|consen 156 ANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS--GCRLGDLW 233 (830)
T ss_pred cccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc--ccccccee
Confidence 4221 368999999998665667898776 77899999999999882 24599999983 45688999
Q ss_pred EEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC-----CCC--------CCcEEEEEcCCCc
Q 016774 237 FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-----RRR--------KDDFWVLDTKAIP 303 (383)
Q Consensus 237 ~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~-----~~~--------~~~~~~~d~~~~~ 303 (383)
.+|+++ .+|.+.. ..+..|.||.-|++.+ +++++|||||.... ... .+.+-+++++
T Consensus 234 ~Ldl~T--l~W~kp~-----~~G~~PlPRSLHsa~~-IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld--- 302 (830)
T KOG4152|consen 234 TLDLDT--LTWNKPS-----LSGVAPLPRSLHSATT-IGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD--- 302 (830)
T ss_pred EEecce--eeccccc-----ccCCCCCCccccccee-ecceeEEecceeeeeccccccccccceeeeccceeeeeec---
Confidence 999999 9999996 6789999999999997 89999999997421 111 2334444544
Q ss_pred ccccccccccccccccccceeeccC----CCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEEe
Q 016774 304 FTSVQQSMLDSRGLLLNMWKRLRAE----GYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVEL 379 (383)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~W~~~~~~----~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (383)
+..|+.+... ...|++|.+|.++++ +.++||..|..-- ..+-..+++- .|+|-||.
T Consensus 303 ---------------t~~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtRlYiWSGRDGY--rKAwnnQVCC-kDlWyLdT 362 (830)
T KOG4152|consen 303 ---------------TMAWETLLMDTLEDNTIPRARAGHCAVAI--GTRLYIWSGRDGY--RKAWNNQVCC-KDLWYLDT 362 (830)
T ss_pred ---------------chheeeeeeccccccccccccccceeEEe--ccEEEEEeccchh--hHhhccccch-hhhhhhcc
Confidence 6778876432 347999999999999 8999999998421 1122223232 46777776
Q ss_pred e
Q 016774 380 V 380 (383)
Q Consensus 380 ~ 380 (383)
+
T Consensus 363 e 363 (830)
T KOG4152|consen 363 E 363 (830)
T ss_pred c
Confidence 4
No 18
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=269.49 Aligned_cols=249 Identities=18% Similarity=0.224 Sum_probs=203.8
Q ss_pred cccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcce
Q 016774 17 QLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGH 96 (383)
Q Consensus 17 ~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~ 96 (383)
+....+|..+... | .+..++++++++.|||+||........++++.|++.++ +|.+++ .+|.+|..|
T Consensus 270 ~~~~~~~~~~~~~------~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-----~W~~~~-~~~~~R~~~ 336 (534)
T PHA03098 270 YSPLSEINTIIDI------H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK-----SWNKVP-ELIYPRKNP 336 (534)
T ss_pred chhhhhcccccCc------c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCC-----eeeECC-CCCcccccc
Confidence 4444556655321 2 24556888899999999998666666789999999555 999887 478899999
Q ss_pred eEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCc
Q 016774 97 TCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLR 176 (383)
Q Consensus 97 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~ 176 (383)
+++.++++||++||... ....+++++||+ .+++|+.+++ +|.+|..|+++..++ +||++||....+..
T Consensus 337 ~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~-------~~~~W~~~~~---lp~~r~~~~~~~~~~-~iYv~GG~~~~~~~ 404 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYN-SISLNTVESWKP-------GESKWREEPP---LIFPRYNPCVVNVNN-LIYVIGGISKNDEL 404 (534)
T ss_pred eEEEECCEEEEEeCCCC-CEecceEEEEcC-------CCCceeeCCC---cCcCCccceEEEECC-EEEEECCcCCCCcc
Confidence 99999999999999863 445788999999 6999998765 788999999988877 99999997655556
Q ss_pred ccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCC--ccccEEEEEcccCccceEEecccc
Q 016774 177 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYE--VLNDVWFLDVYEGFFKWVQIPYEL 254 (383)
Q Consensus 177 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~--~~~~v~~~~~~~~~~~W~~i~~~~ 254 (383)
++++++||+.++ +|+.++ ++|.+|.+|+++.+ +++||++||...... .++.+++||+.+ ++|+.+
T Consensus 405 ~~~v~~yd~~t~----~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~~~---- 471 (534)
T PHA03098 405 LKTVECFSLNTN----KWSKGS--PLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVT--NKWTEL---- 471 (534)
T ss_pred cceEEEEeCCCC----eeeecC--CCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCC--CceeeC----
Confidence 789999999999 999997 78889999999988 599999999853322 356799999999 999999
Q ss_pred cCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeecc
Q 016774 255 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA 327 (383)
Q Consensus 255 ~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 327 (383)
..+|.+|..+++++ .+++||++||.+... ..+++++||++ +++|+.+..
T Consensus 472 ----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~-~~~~v~~yd~~------------------~~~W~~~~~ 520 (534)
T PHA03098 472 ----SSLNFPRINASLCI-FNNKIYVVGGDKYEY-YINEIEVYDDK------------------TNTWTLFCK 520 (534)
T ss_pred ----CCCCcccccceEEE-ECCEEEEEcCCcCCc-ccceeEEEeCC------------------CCEEEecCC
Confidence 46788899888886 799999999997643 36789999998 788988754
No 19
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=9.9e-33 Score=243.99 Aligned_cols=247 Identities=23% Similarity=0.444 Sum_probs=204.8
Q ss_pred CCCCcccceeee--CCEEEEEccccCCC---CCCCceEEEEeccCcccccceEEcC-CCCCCCCcceeEEEEC-CEEEEE
Q 016774 36 PNPRASHSLNFV--SNCLVLFGGGCEGG---RHLDDTWVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVIG-DCLVLF 108 (383)
Q Consensus 36 p~~r~~~~~~~~--~~~i~v~GG~~~~~---~~~~~~~~~~~~~~~~~~~~W~~~~-~~~p~~r~~~~~~~~~-~~iyv~ 108 (383)
|.||...++++. .+-+++|||-.... ..++|+|.|+..++ +|+++. +..|+||++|.++++. +.+|||
T Consensus 64 PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~-----eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 64 PSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKN-----EWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecccc-----ceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 999999998876 56999999964432 35689999998665 999984 4578999999999997 779999
Q ss_pred cCccC-C----CCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC---Ccccce
Q 016774 109 GGIND-R----GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG---LRLGDT 180 (383)
Q Consensus 109 GG~~~-~----~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~ 180 (383)
||... + .....|+|+||+ .+.+|+++...+ .|.||++|.+++... ++++|||.-... .++||+
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~-------~trkweql~~~g-~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDv 209 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDL-------KTRKWEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDV 209 (521)
T ss_pred ccccCCcchhhhhhhhheeeeee-------ccchheeeccCC-CCCCCccceeEEeee-eEEEEcceecCCCceEEeeee
Confidence 99752 1 224789999999 799999999877 999999999999888 999999974332 468999
Q ss_pred EEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccC--------CCCCccccEEEEEccc---CccceE
Q 016774 181 WVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRG--------VGYEVLNDVWFLDVYE---GFFKWV 248 (383)
Q Consensus 181 ~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~--------~~~~~~~~v~~~~~~~---~~~~W~ 248 (383)
|+||+++= +|+++. .+..|.||++|++.+..++.|||.||.. ......+|+|.++++. +.-.|.
T Consensus 210 y~FdLdty----kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~ 285 (521)
T KOG1230|consen 210 YAFDLDTY----KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWT 285 (521)
T ss_pred EEEeccce----eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEe
Confidence 99999996 999998 5557999999999998779999999982 2345678999999976 234689
Q ss_pred EecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC--------CCCCCCcEEEEEcCCCccc
Q 016774 249 QIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFT 305 (383)
Q Consensus 249 ~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~~~d~~~~~~~ 305 (383)
++. ..+..|.||.++++++..+++.+.|||... .+...+|+|.||++...|.
T Consensus 286 kvk-----p~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~ 345 (521)
T KOG1230|consen 286 KVK-----PSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWS 345 (521)
T ss_pred ecc-----CCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhh
Confidence 996 789999999999999888889999999743 2456899999999965554
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.6e-31 Score=245.66 Aligned_cols=232 Identities=18% Similarity=0.251 Sum_probs=181.0
Q ss_pred cceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccce----EEcCCCCCCCCcce
Q 016774 21 VSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKW----QKVNSGIPSGRFGH 96 (383)
Q Consensus 21 ~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W----~~~~~~~p~~r~~~ 96 (383)
.+|..+... |.||..+++++++++||++||.. .....+++++|++..+ +| +.++ .+|.+|..|
T Consensus 51 ~~W~~~~~l------p~~r~~~~~~~~~~~lyviGG~~-~~~~~~~v~~~d~~~~-----~w~~~~~~~~-~lp~~~~~~ 117 (323)
T TIGR03548 51 LKWVKDGQL------PYEAAYGASVSVENGIYYIGGSN-SSERFSSVYRITLDES-----KEELICETIG-NLPFTFENG 117 (323)
T ss_pred eeEEEcccC------CccccceEEEEECCEEEEEcCCC-CCCCceeEEEEEEcCC-----ceeeeeeEcC-CCCcCccCc
Confidence 368887543 88998888899999999999964 3456789999998654 55 5655 478899999
Q ss_pred eEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCC-CccccceeEEECCcEEEEEcccCCCCC
Q 016774 97 TCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAP-PARGAHAACCIDNRKMVIHAGIGLYGL 175 (383)
Q Consensus 97 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~~i~v~GG~~~~~~ 175 (383)
++++++++|||+||... ....+++++||+ .+++|++++. +| .+|..|+++..++ +|||+||.+..
T Consensus 118 ~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~-------~~~~W~~~~~---~p~~~r~~~~~~~~~~-~iYv~GG~~~~-- 183 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRN-GKPSNKSYLFNL-------ETQEWFELPD---FPGEPRVQPVCVKLQN-ELYVFGGGSNI-- 183 (323)
T ss_pred eEEEECCEEEEEeCcCC-CccCceEEEEcC-------CCCCeeECCC---CCCCCCCcceEEEECC-EEEEEcCCCCc--
Confidence 99999999999999743 445789999999 6999999865 44 4688888877777 99999997432
Q ss_pred cccceEEEeccCCcccCceEEcccC---CCCCCCCCceEEEEcCCEEEEEcccCCCC-----------------------
Q 016774 176 RLGDTWVLELSENFCFGSWQQLVTH---PSPPARSGHSLTRIGGNRTVLFGGRGVGY----------------------- 229 (383)
Q Consensus 176 ~~~~~~~~d~~~~~~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~i~v~GG~~~~~----------------------- 229 (383)
...++++||++++ +|++++.. ..|.++..++++.+.+++||++||.+...
T Consensus 184 ~~~~~~~yd~~~~----~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (323)
T TIGR03548 184 AYTDGYKYSPKKN----QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEY 259 (323)
T ss_pred cccceEEEecCCC----eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 3567899999999 99999721 24555556666666579999999985211
Q ss_pred --------CccccEEEEEcccCccceEEecccccCCCCCCC-CCceeeEEEEEcCCEEEEEcCcCCCCCCCCcE
Q 016774 230 --------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFS-LPRVGHSATLILGGRVLIYGGEDSARRRKDDF 294 (383)
Q Consensus 230 --------~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p-~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~ 294 (383)
.+.+++++||+.+ ++|+.+. .+| .+|.++++++ .+++||++||....+.+.+++
T Consensus 260 ~~~~~~~~~~~~~v~~yd~~~--~~W~~~~--------~~p~~~r~~~~~~~-~~~~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 260 FLKPPEWYNWNRKILIYNVRT--GKWKSIG--------NSPFFARCGAALLL-TGNNIFSINGELKPGVRTPDI 322 (323)
T ss_pred hCCCccccCcCceEEEEECCC--CeeeEcc--------cccccccCchheEE-ECCEEEEEeccccCCcCCcCc
Confidence 1236799999999 9999983 455 5888888876 899999999998776666554
No 21
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.4e-32 Score=247.22 Aligned_cols=291 Identities=25% Similarity=0.444 Sum_probs=230.0
Q ss_pred hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCC------
Q 016774 14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNS------ 87 (383)
Q Consensus 14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~------ 87 (383)
++|+-.+++|..-...++. |.+.+.|..+..+.+||+|||+.+-.+..+|+|.+.. .-+.|+++..
T Consensus 60 HvYNTatnqWf~PavrGDi---PpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQa-----sRWeWkrlkp~~p~nG 131 (830)
T KOG4152|consen 60 HVYNTATNQWFAPAVRGDI---PPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQA-----SRWEWKRLKPKTPKNG 131 (830)
T ss_pred hhhccccceeecchhcCCC---CCchhhcceEecCceEEEEccEeeeccccchHHHhhh-----hhhhHhhcCCCCCCCC
Confidence 5678889999988888887 9999999999999999999999999999999987766 4458988752
Q ss_pred CCCCCCcceeEEEECCEEEEEcCccCCC--------CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEE
Q 016774 88 GIPSGRFGHTCVVIGDCLVLFGGINDRG--------NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCI 159 (383)
Q Consensus 88 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~ 159 (383)
.+|.+|.+|+..+++++.|+|||..... +++||+|+++++.- ..-.-|+.....+..|.||..|.++..
T Consensus 132 ~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~G---sgvv~W~ip~t~Gv~P~pRESHTAViY 208 (830)
T KOG4152|consen 132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPG---SGVVAWDIPITYGVLPPPRESHTAVIY 208 (830)
T ss_pred CCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccC---CceEEEecccccCCCCCCcccceeEEE
Confidence 3577999999999999999999975321 25899999998411 235679998888999999999999886
Q ss_pred C-----CcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccC-------
Q 016774 160 D-----NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRG------- 226 (383)
Q Consensus 160 ~-----~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~------- 226 (383)
. ..++||+||+ .+.++.|+|.+|++|= .|.+.+ .+-.|.+|..|+++.++ +++|||||.-
T Consensus 209 ~eKDs~~skmvvyGGM--~G~RLgDLW~Ldl~Tl----~W~kp~~~G~~PlPRSLHsa~~IG-nKMyvfGGWVPl~~~~~ 281 (830)
T KOG4152|consen 209 TEKDSKKSKMVVYGGM--SGCRLGDLWTLDLDTL----TWNKPSLSGVAPLPRSLHSATTIG-NKMYVFGGWVPLVMDDV 281 (830)
T ss_pred EeccCCcceEEEEccc--ccccccceeEEeccee----ecccccccCCCCCCcccccceeec-ceeEEecceeeeecccc
Confidence 1 2379999996 5668999999999985 999998 77789999999999995 9999999981
Q ss_pred ------CCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCC------CCcE
Q 016774 227 ------VGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRR------KDDF 294 (383)
Q Consensus 227 ------~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~------~~~~ 294 (383)
....+.+.+-++|+++ ..|+.+-.++++... .|.+|.+||++. ++.++||..|.++.... ..|+
T Consensus 282 ~~~~hekEWkCTssl~clNldt--~~W~tl~~d~~ed~t-iPR~RAGHCAvA-igtRlYiWSGRDGYrKAwnnQVCCkDl 357 (830)
T KOG4152|consen 282 KVATHEKEWKCTSSLACLNLDT--MAWETLLMDTLEDNT-IPRARAGHCAVA-IGTRLYIWSGRDGYRKAWNNQVCCKDL 357 (830)
T ss_pred ccccccceeeeccceeeeeecc--hheeeeeeccccccc-cccccccceeEE-eccEEEEEeccchhhHhhccccchhhh
Confidence 1233567888999999 999998755554332 899999999997 89999999999876433 4789
Q ss_pred EEEEcCCCcccccccccccccccccccceeec
Q 016774 295 WVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLR 326 (383)
Q Consensus 295 ~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 326 (383)
|.+|++..+..+-.+.--...+..+-+|-.+.
T Consensus 358 WyLdTekPp~P~~VQL~rA~tNSlevsW~~V~ 389 (830)
T KOG4152|consen 358 WYLDTEKPPPPARVQLVRANTNSLEVSWGAVA 389 (830)
T ss_pred hhhcccCCCCCceEEEEecccceeEEechhhc
Confidence 99999865432111111222333455565553
No 22
>PHA03098 kelch-like protein; Provisional
Probab=99.98 E-value=1e-30 Score=257.95 Aligned_cols=224 Identities=18% Similarity=0.249 Sum_probs=186.0
Q ss_pred ccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEE
Q 016774 79 MLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACC 158 (383)
Q Consensus 79 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~ 158 (383)
..+|..+.. .| .+..|++++++++||++||........+++++||+ .+++|..++. +|.+|..|+++.
T Consensus 273 ~~~~~~~~~-~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~-------~~~~W~~~~~---~~~~R~~~~~~~ 340 (534)
T PHA03098 273 LSEINTIID-IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDT-------KTKSWNKVPE---LIYPRKNPGVTV 340 (534)
T ss_pred hhhcccccC-cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeC-------CCCeeeECCC---CCcccccceEEE
Confidence 347777642 22 34557899999999999998765656789999999 6999998765 778999999998
Q ss_pred ECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEE
Q 016774 159 IDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL 238 (383)
Q Consensus 159 ~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~ 238 (383)
.++ +||++||.. ....++++++||+.++ +|+.++ ++|.+|..|+++.+ +++||++||........+++++|
T Consensus 341 ~~~-~lyv~GG~~-~~~~~~~v~~yd~~~~----~W~~~~--~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~y 411 (534)
T PHA03098 341 FNN-RIYVIGGIY-NSISLNTVESWKPGES----KWREEP--PLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECF 411 (534)
T ss_pred ECC-EEEEEeCCC-CCEecceEEEEcCCCC----ceeeCC--CcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEE
Confidence 877 999999986 3346789999999999 999988 78899999999988 59999999975555567899999
Q ss_pred EcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCC--CCCcEEEEEcCCCcccccccccccccc
Q 016774 239 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR--RKDDFWVLDTKAIPFTSVQQSMLDSRG 316 (383)
Q Consensus 239 ~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 316 (383)
|+.+ ++|+.+ ..+|.+|.+|++++ .+++||++||.+.... ..+++++||++
T Consensus 412 d~~t--~~W~~~--------~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~---------------- 464 (534)
T PHA03098 412 SLNT--NKWSKG--------SPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPV---------------- 464 (534)
T ss_pred eCCC--Ceeeec--------CCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCC----------------
Confidence 9999 999998 46889999998886 8999999999865332 25669999988
Q ss_pred cccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774 317 LLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD 357 (383)
Q Consensus 317 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~ 357 (383)
+++|+.+.. +|.+|..++++.. +++|||+||...
T Consensus 465 --~~~W~~~~~---~~~~r~~~~~~~~--~~~iyv~GG~~~ 498 (534)
T PHA03098 465 --TNKWTELSS---LNFPRINASLCIF--NNKIYVVGGDKY 498 (534)
T ss_pred --CCceeeCCC---CCcccccceEEEE--CCEEEEEcCCcC
Confidence 789998865 7788998888877 789999999864
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.98 E-value=2.2e-30 Score=241.89 Aligned_cols=242 Identities=21% Similarity=0.290 Sum_probs=183.7
Q ss_pred ccccceeeeecCCCCCCCC-CCCcccceeeeCCEEEEEccccCCC-----CCCCceEEEEeccCcccccceEEcCCCCCC
Q 016774 18 LESVSCRNISDADGDLVLP-NPRASHSLNFVSNCLVLFGGGCEGG-----RHLDDTWVAYVGNDFQGMLKWQKVNSGIPS 91 (383)
Q Consensus 18 ~~~~~W~~~~~~~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~-----~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~ 91 (383)
+...+|++++.. | .+|..+++++++++|||+||..... ...+++++||+..+ +|++++..+|.
T Consensus 38 ~~~~~W~~l~~~------p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~-----~W~~~~~~~p~ 106 (346)
T TIGR03547 38 KPSKGWQKIADF------PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN-----SWQKLDTRSPV 106 (346)
T ss_pred CCCCCceECCCC------CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC-----EEecCCCCCCC
Confidence 356789998754 5 4899999999999999999974322 24678999999655 99998744567
Q ss_pred CCcceeEE-EECCEEEEEcCccCCC---------------------------------CCccceeeeecccccCCccccc
Q 016774 92 GRFGHTCV-VIGDCLVLFGGINDRG---------------------------------NRHNDTWIGQIACHENLGITLS 137 (383)
Q Consensus 92 ~r~~~~~~-~~~~~iyv~GG~~~~~---------------------------------~~~~~~~~~d~~~~~~~~~~~~ 137 (383)
+|.+|+++ +++++||++||..... ...+++++||+ .+++
T Consensus 107 ~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp-------~t~~ 179 (346)
T TIGR03547 107 GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDP-------STNQ 179 (346)
T ss_pred cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEEC-------CCCc
Confidence 78888777 6899999999975310 01378999999 6999
Q ss_pred EEEccCCCCCCC-ccccceeEEECCcEEEEEcccCCCCCcccceEEEec--cCCcccCceEEcccCCCCCCC-------C
Q 016774 138 WRLLDVGSIAPP-ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLEL--SENFCFGSWQQLVTHPSPPAR-------S 207 (383)
Q Consensus 138 W~~~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~--~~~~~~~~W~~~~~~~~p~~r-------~ 207 (383)
|+.+.+ +|. +|..|+++..++ +|||+||....+....+++.|++ +++ +|+.++ ++|.+| .
T Consensus 180 W~~~~~---~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~----~W~~~~--~m~~~r~~~~~~~~ 249 (346)
T TIGR03547 180 WRNLGE---NPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKL----EWNKLP--PLPPPKSSSQEGLA 249 (346)
T ss_pred eeECcc---CCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCc----eeeecC--CCCCCCCCcccccc
Confidence 999865 554 677888777776 99999997544434456666654 666 999998 455443 4
Q ss_pred CceEEEEcCCEEEEEcccCCCC----------------CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEE
Q 016774 208 GHSLTRIGGNRTVLFGGRGVGY----------------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSAT 271 (383)
Q Consensus 208 ~~~~~~~~~~~i~v~GG~~~~~----------------~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~ 271 (383)
+|+++.+ +++||++||..... .....+.+||+++ ++|+.+ ..+|.+|..++++
T Consensus 250 ~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~--~~W~~~--------~~lp~~~~~~~~~ 318 (346)
T TIGR03547 250 GAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN--GKWSKV--------GKLPQGLAYGVSV 318 (346)
T ss_pred EEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC--Cccccc--------CCCCCCceeeEEE
Confidence 5656777 69999999984211 0123578999999 999998 5789999888766
Q ss_pred EEcCCEEEEEcCcCCCCCCCCcEEEEEc
Q 016774 272 LILGGRVLIYGGEDSARRRKDDFWVLDT 299 (383)
Q Consensus 272 ~~~~~~l~i~GG~~~~~~~~~~~~~~d~ 299 (383)
+ .+++|||+||.+..+...++++.+-.
T Consensus 319 ~-~~~~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 319 S-WNNGVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred E-cCCEEEEEeccCCCCCEeeeEEEEEe
Confidence 5 89999999999887778888887653
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=6.1e-30 Score=240.81 Aligned_cols=242 Identities=21% Similarity=0.260 Sum_probs=182.2
Q ss_pred ccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccC-C----CCCCCceEEEEeccCcccccceEEcCCCCCCCCc
Q 016774 20 SVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCE-G----GRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRF 94 (383)
Q Consensus 20 ~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~-~----~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~ 94 (383)
+.+|+++.... ..+|.++++++++++|||+||... . ....+++|+||...+ +|++++...|.+|.
T Consensus 61 ~~~W~~l~~~p-----~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n-----~W~~~~~~~p~~~~ 130 (376)
T PRK14131 61 SKGWTKIAAFP-----GGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN-----SWQKLDTRSPVGLA 130 (376)
T ss_pred CCCeEECCcCC-----CCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC-----EEEeCCCCCCCccc
Confidence 57899886431 248999999999999999999754 1 134689999999655 99999754567778
Q ss_pred ceeEEE-ECCEEEEEcCccCC---C------------------------------CCccceeeeecccccCCcccccEEE
Q 016774 95 GHTCVV-IGDCLVLFGGINDR---G------------------------------NRHNDTWIGQIACHENLGITLSWRL 140 (383)
Q Consensus 95 ~~~~~~-~~~~iyv~GG~~~~---~------------------------------~~~~~~~~~d~~~~~~~~~~~~W~~ 140 (383)
+|++++ .+++||++||.... . ...+++++||+ .+++|+.
T Consensus 131 ~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~-------~t~~W~~ 203 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDP-------STNQWKN 203 (376)
T ss_pred ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEEC-------CCCeeeE
Confidence 888877 79999999997531 0 12478999999 6999999
Q ss_pred ccCCCCCCC-ccccceeEEECCcEEEEEcccCCCCCcccceEE--EeccCCcccCceEEcccCCCCCCCC--------Cc
Q 016774 141 LDVGSIAPP-ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWV--LELSENFCFGSWQQLVTHPSPPARS--------GH 209 (383)
Q Consensus 141 ~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~--~d~~~~~~~~~W~~~~~~~~p~~r~--------~~ 209 (383)
+.+ +|. +|..|+++..++ +|||+||....+....++|. ||++++ +|+.++ ++|.+|. ++
T Consensus 204 ~~~---~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~----~W~~~~--~~p~~~~~~~~~~~~~~ 273 (376)
T PRK14131 204 AGE---SPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNL----KWQKLP--DLPPAPGGSSQEGVAGA 273 (376)
T ss_pred CCc---CCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCc----ceeecC--CCCCCCcCCcCCccceE
Confidence 765 554 677777777776 99999997544444556654 456777 999998 5555553 22
Q ss_pred eEEEEcCCEEEEEcccCCCCC----------------ccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEE
Q 016774 210 SLTRIGGNRTVLFGGRGVGYE----------------VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI 273 (383)
Q Consensus 210 ~~~~~~~~~i~v~GG~~~~~~----------------~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~ 273 (383)
.++++ +++|||+||...... ....+.+||+++ ++|+.+ ..+|.+|..+++++
T Consensus 274 ~a~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~--~~W~~~--------~~lp~~r~~~~av~- 341 (376)
T PRK14131 274 FAGYS-NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN--GKWQKV--------GELPQGLAYGVSVS- 341 (376)
T ss_pred eceeE-CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC--Cccccc--------CcCCCCccceEEEE-
Confidence 24556 599999999742210 012467899999 999988 57899999887665
Q ss_pred cCCEEEEEcCcCCCCCCCCcEEEEEcC
Q 016774 274 LGGRVLIYGGEDSARRRKDDFWVLDTK 300 (383)
Q Consensus 274 ~~~~l~i~GG~~~~~~~~~~~~~~d~~ 300 (383)
.+++|||+||........++++.|+.+
T Consensus 342 ~~~~iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 342 WNNGVLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred eCCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence 899999999987766778999999987
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=5.2e-28 Score=234.08 Aligned_cols=203 Identities=17% Similarity=0.186 Sum_probs=171.8
Q ss_pred eeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeee
Q 016774 45 NFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIG 124 (383)
Q Consensus 45 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 124 (383)
+..++.||++||... ....+.++.|++..+ +|..+++ +|.+|..++++.++++||++||... .+.+++|
T Consensus 268 ~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~-----~W~~~~~-m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~y 336 (480)
T PHA02790 268 THVGEVVYLIGGWMN-NEIHNNAIAVNYISN-----NWIPIPP-MNSPRLYASGVPANNKLYVVGGLPN----PTSVERW 336 (480)
T ss_pred EEECCEEEEEcCCCC-CCcCCeEEEEECCCC-----EEEECCC-CCchhhcceEEEECCEEEEECCcCC----CCceEEE
Confidence 448999999999643 345678999999555 9999974 7889999999999999999999753 2568999
Q ss_pred ecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCC
Q 016774 125 QIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPP 204 (383)
Q Consensus 125 d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~ 204 (383)
|+ .+++|..+++ +|.+|..|+++..++ +||++||.... .+.+.+||+.++ +|+.++ ++|.
T Consensus 337 dp-------~~n~W~~~~~---l~~~r~~~~~~~~~g-~IYviGG~~~~---~~~ve~ydp~~~----~W~~~~--~m~~ 396 (480)
T PHA02790 337 FH-------GDAAWVNMPS---LLKPRCNPAVASINN-VIYVIGGHSET---DTTTEYLLPNHD----QWQFGP--STYY 396 (480)
T ss_pred EC-------CCCeEEECCC---CCCCCcccEEEEECC-EEEEecCcCCC---CccEEEEeCCCC----EEEeCC--CCCC
Confidence 98 5899999876 788999999988887 99999997422 367899999999 999998 7888
Q ss_pred CCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCc
Q 016774 205 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGE 284 (383)
Q Consensus 205 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~ 284 (383)
+|..|+++++ +++||++||. +.+||+++ ++|+.+ .++|.+|.++++++ .+++||++||.
T Consensus 397 ~r~~~~~~~~-~~~IYv~GG~---------~e~ydp~~--~~W~~~--------~~m~~~r~~~~~~v-~~~~IYviGG~ 455 (480)
T PHA02790 397 PHYKSCALVF-GRRLFLVGRN---------AEFYCESS--NTWTLI--------DDPIYPRDNPELII-VDNKLLLIGGF 455 (480)
T ss_pred ccccceEEEE-CCEEEEECCc---------eEEecCCC--CcEeEc--------CCCCCCccccEEEE-ECCEEEEECCc
Confidence 9999999988 5999999984 56799999 999999 57889999998887 89999999998
Q ss_pred CCCCCCCCcEEEEEcC
Q 016774 285 DSARRRKDDFWVLDTK 300 (383)
Q Consensus 285 ~~~~~~~~~~~~~d~~ 300 (383)
+... ..+.+++||++
T Consensus 456 ~~~~-~~~~ve~Yd~~ 470 (480)
T PHA02790 456 YRGS-YIDTIEVYNNR 470 (480)
T ss_pred CCCc-ccceEEEEECC
Confidence 7533 35779999998
No 26
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=3.7e-26 Score=221.14 Aligned_cols=190 Identities=16% Similarity=0.211 Sum_probs=161.6
Q ss_pred EEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcc
Q 016774 98 CVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL 177 (383)
Q Consensus 98 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~ 177 (383)
.+..++.||++||... ....+.+++||+ .+++|..+++ +|.+|..++++..++ +||++||.+. .
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp-------~~~~W~~~~~---m~~~r~~~~~v~~~~-~iYviGG~~~----~ 330 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNY-------ISNNWIPIPP---MNSPRLYASGVPANN-KLYVVGGLPN----P 330 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEEC-------CCCEEEECCC---CCchhhcceEEEECC-EEEEECCcCC----C
Confidence 3458999999999854 345678999999 5899999876 778999999888877 9999999742 2
Q ss_pred cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCC
Q 016774 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 257 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~ 257 (383)
+.+++||+.++ +|+.++ ++|.+|..|+++.+ +++||++||.... .+.+.+||+.+ ++|+.+
T Consensus 331 ~sve~ydp~~n----~W~~~~--~l~~~r~~~~~~~~-~g~IYviGG~~~~---~~~ve~ydp~~--~~W~~~------- 391 (480)
T PHA02790 331 TSVERWFHGDA----AWVNMP--SLLKPRCNPAVASI-NNVIYVIGGHSET---DTTTEYLLPNH--DQWQFG------- 391 (480)
T ss_pred CceEEEECCCC----eEEECC--CCCCCCcccEEEEE-CCEEEEecCcCCC---CccEEEEeCCC--CEEEeC-------
Confidence 56899999998 999998 88999999999998 6999999998532 35789999999 999998
Q ss_pred CCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccc
Q 016774 258 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSF 337 (383)
Q Consensus 258 ~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~ 337 (383)
..+|.+|.+|++++ .+++||++||. +.+||++ +++|+.+.+ +|.+|..
T Consensus 392 -~~m~~~r~~~~~~~-~~~~IYv~GG~---------~e~ydp~------------------~~~W~~~~~---m~~~r~~ 439 (480)
T PHA02790 392 -PSTYYPHYKSCALV-FGRRLFLVGRN---------AEFYCES------------------SNTWTLIDD---PIYPRDN 439 (480)
T ss_pred -CCCCCccccceEEE-ECCEEEEECCc---------eEEecCC------------------CCcEeEcCC---CCCCccc
Confidence 57889999998886 89999999984 4578876 789998865 8899999
Q ss_pred eeeeecCCCcEEEEEcCcc
Q 016774 338 HRACPDYSGRYLYVFGGMV 356 (383)
Q Consensus 338 ~~~~~~~~~~~l~v~GG~~ 356 (383)
++++++ +++||++||..
T Consensus 440 ~~~~v~--~~~IYviGG~~ 456 (480)
T PHA02790 440 PELIIV--DNKLLLIGGFY 456 (480)
T ss_pred cEEEEE--CCEEEEECCcC
Confidence 999888 88999999985
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.85 E-value=1.8e-19 Score=158.21 Aligned_cols=285 Identities=19% Similarity=0.233 Sum_probs=203.6
Q ss_pred CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCC
Q 016774 36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRG 115 (383)
Q Consensus 36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 115 (383)
|.+-...+...+++.+||-=|. .-...+.+|+.. ....|+++..-+-.+|.+..+++++++||+|||.....
T Consensus 34 Pvg~KnG~Ga~ig~~~YVGLGs-----~G~afy~ldL~~---~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~ 105 (381)
T COG3055 34 PVGFKNGAGALIGDTVYVGLGS-----AGTAFYVLDLKK---PGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSV 105 (381)
T ss_pred CccccccccceecceEEEEecc-----CCccceehhhhc---CCCCceEcccCCCcccccchheeeCCeEEEeeccccCC
Confidence 8888888888899999987662 123456666644 33499999877788999999999999999999975322
Q ss_pred ----CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC-----------------
Q 016774 116 ----NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG----------------- 174 (383)
Q Consensus 116 ----~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~----------------- 174 (383)
+.++++|+||+ .+++|+++.+. .|....+|.++...+.+++++||.+..-
T Consensus 106 ~~~~~~~nd~Y~y~p-------~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 106 SSSPQVFNDAYRYDP-------STNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA 176 (381)
T ss_pred CCCceEeeeeEEecC-------CCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence 34899999999 59999999765 5777888888888888999999985220
Q ss_pred ----------------CcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEE
Q 016774 175 ----------------LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL 238 (383)
Q Consensus 175 ----------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~ 238 (383)
....+++.|++.++ +|+.+-. ....++++ ++++..++++.++-|...+......++++
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n----~W~~~G~-~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~ 250 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTN----QWRNLGE-NPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQA 250 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccc----hhhhcCc-CcccCccC-cceeecCCeEEEEcceecCCccccceeEE
Confidence 12457899999999 9998862 22345566 45556578899999986666667778888
Q ss_pred EcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC------------------CCCCCcEEEEEcC
Q 016774 239 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA------------------RRRKDDFWVLDTK 300 (383)
Q Consensus 239 ~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~------------------~~~~~~~~~~d~~ 300 (383)
+...+..+|..+......... -+....++=.- ..++.+++.||-+-. ..-.++||++|
T Consensus 251 ~~~~~~~~w~~l~~lp~~~~~-~~eGvAGaf~G-~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-- 326 (381)
T COG3055 251 DFGGDNLKWLKLSDLPAPIGS-NKEGVAGAFSG-KSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-- 326 (381)
T ss_pred EeccCceeeeeccCCCCCCCC-Cccccceeccc-eeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--
Confidence 888766899998522221111 12333333222 267889999986521 11247899999
Q ss_pred CCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccc
Q 016774 301 AIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRF 370 (383)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 370 (383)
++.|+.+ +.+|.++.+-.+ +..++.||++||...+.......+.+..
T Consensus 327 ------------------~g~Wk~~---GeLp~~l~YG~s--~~~nn~vl~IGGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 327 ------------------NGSWKIV---GELPQGLAYGVS--LSYNNKVLLIGGETSGGKATTRVYSLSW 373 (381)
T ss_pred ------------------CCceeee---cccCCCccceEE--EecCCcEEEEccccCCCeeeeeEEEEEE
Confidence 5799988 558887664333 3347899999999887765555544443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.79 E-value=1.4e-17 Score=146.41 Aligned_cols=254 Identities=18% Similarity=0.291 Sum_probs=185.5
Q ss_pred hhhhhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCC----CCCCCceEEEEeccCcccccceEEcC
Q 016774 11 LYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEG----GRHLDDTWVAYVGNDFQGMLKWQKVN 86 (383)
Q Consensus 11 ~~~~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~----~~~~~~~~~~~~~~~~~~~~~W~~~~ 86 (383)
||+.-++.....|+++..-. -.+|.+..++.++++||||||.-.. .+..+|+|.|+...+ +|.++.
T Consensus 60 fy~ldL~~~~k~W~~~a~Fp-----G~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n-----sW~kl~ 129 (381)
T COG3055 60 FYVLDLKKPGKGWTKIADFP-----GGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN-----SWHKLD 129 (381)
T ss_pred ceehhhhcCCCCceEcccCC-----CcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC-----hhheec
Confidence 44444555667899886443 2389999999999999999996432 345688999998665 999998
Q ss_pred CCCCCCCcceeEEEECC-EEEEEcCccCC---------------------------------CCCccceeeeecccccCC
Q 016774 87 SGIPSGRFGHTCVVIGD-CLVLFGGINDR---------------------------------GNRHNDTWIGQIACHENL 132 (383)
Q Consensus 87 ~~~p~~r~~~~~~~~~~-~iyv~GG~~~~---------------------------------~~~~~~~~~~d~~~~~~~ 132 (383)
...|....+++++.+++ +||++||.+.. -....+++.|++
T Consensus 130 t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p------ 203 (381)
T COG3055 130 TRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDP------ 203 (381)
T ss_pred cccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccccc------
Confidence 88899999999999998 79999997521 001233556666
Q ss_pred cccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCC-----CCCC
Q 016774 133 GITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSP-----PARS 207 (383)
Q Consensus 133 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p-----~~r~ 207 (383)
.++.|+.+-.. +-.++++ +++...++++.++-|.-..+.+...++++++..+ ..+|..+...+.| ...+
T Consensus 204 -~~n~W~~~G~~--pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~--~~~w~~l~~lp~~~~~~~eGvA 277 (381)
T COG3055 204 -STNQWRNLGEN--PFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD--NLKWLKLSDLPAPIGSNKEGVA 277 (381)
T ss_pred -ccchhhhcCcC--cccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccC--ceeeeeccCCCCCCCCCccccc
Confidence 69999976432 2234555 4445555589999998777778888999998744 4689999721211 3344
Q ss_pred CceEEEEcCCEEEEEcccC------------------CCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeE
Q 016774 208 GHSLTRIGGNRTVLFGGRG------------------VGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS 269 (383)
Q Consensus 208 ~~~~~~~~~~~i~v~GG~~------------------~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~ 269 (383)
++-.-.. ++.+++.||.. ....+.++||.|| . ..|+.+ +.+|.++....
T Consensus 278 Gaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~--g~Wk~~--------GeLp~~l~YG~ 344 (381)
T COG3055 278 GAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--N--GSWKIV--------GELPQGLAYGV 344 (381)
T ss_pred eecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--C--Cceeee--------cccCCCccceE
Confidence 5555555 58899999982 1233567899998 5 889999 89999887766
Q ss_pred EEEEcCCEEEEEcCcCCCCCCCCcEEEEEcC
Q 016774 270 ATLILGGRVLIYGGEDSARRRKDDFWVLDTK 300 (383)
Q Consensus 270 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~ 300 (383)
++. .++.+|++||.+..+.+..+|+.+-..
T Consensus 345 s~~-~nn~vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 345 SLS-YNNKVLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred EEe-cCCcEEEEccccCCCeeeeeEEEEEEc
Confidence 665 899999999999988888888877654
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.72 E-value=7.6e-19 Score=159.70 Aligned_cols=333 Identities=19% Similarity=0.251 Sum_probs=211.2
Q ss_pred ccceeeeecCC----CCCCCCCCCcccceeeeCC--EEEEEccccCCCCCCCceEEEEeccCcccccceEEcC--CCCCC
Q 016774 20 SVSCRNISDAD----GDLVLPNPRASHSLNFVSN--CLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVN--SGIPS 91 (383)
Q Consensus 20 ~~~W~~~~~~~----~~~~~p~~r~~~~~~~~~~--~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~p~ 91 (383)
...|.++.... ..+..|..|.+|.++...+ ++|++||.+ +-+.+.|.|.|....+ .|+.++ +..|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e~-----~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKEN-----QWTCINRDTEGPG 311 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCcc-----eeEEeecCCCCCc
Confidence 34688776554 1122399999999998754 999999964 4467899999999665 999875 45789
Q ss_pred CCcceeEEEECC--EEEEEcCccCCC-----CCccceeeeecccccCCcccccEEEccCCC---CCCCccccceeEEECC
Q 016774 92 GRFGHTCVVIGD--CLVLFGGINDRG-----NRHNDTWIGQIACHENLGITLSWRLLDVGS---IAPPARGAHAACCIDN 161 (383)
Q Consensus 92 ~r~~~~~~~~~~--~iyv~GG~~~~~-----~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~---~~p~~r~~~~~~~~~~ 161 (383)
.|..|.|+..-. ++|+.|-+-... ..-.|+|.||+ .++.|..+.... ..|...+.|.+++.++
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi-------~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~ 384 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDI-------DTNTWMLLSEDTAADGGPKLVFDHQMCVDSE 384 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEec-------CCceeEEecccccccCCcceeecceeeEecC
Confidence 999999999866 699999754221 12578999999 499999887332 3788999999999877
Q ss_pred -cEEEEEcccCCCC--CcccceEEEeccCCcccCceEEccc---C-----CCCCCCCCceEEEEc-CCEEEEEcccCCCC
Q 016774 162 -RKMVIHAGIGLYG--LRLGDTWVLELSENFCFGSWQQLVT---H-----PSPPARSGHSLTRIG-GNRTVLFGGRGVGY 229 (383)
Q Consensus 162 -~~i~v~GG~~~~~--~~~~~~~~~d~~~~~~~~~W~~~~~---~-----~~p~~r~~~~~~~~~-~~~i~v~GG~~~~~ 229 (383)
+.+||+||+.... .....+|.||+... .|.++.. . .....|.+|++-... ++.+|++||... .
T Consensus 385 k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~----~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s-~ 459 (723)
T KOG2437|consen 385 KHMIYVFGGRILTCNEPQFSGLYAFNCQCQ----TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS-K 459 (723)
T ss_pred cceEEEecCeeccCCCccccceEEEecCCc----cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc-c
Confidence 2499999975332 45778999999998 9998871 0 123468888877664 356889998853 3
Q ss_pred CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEE-EcCCEEEEEcCcCCC-----CCCCCcEEEEEcCCCc
Q 016774 230 EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL-ILGGRVLIYGGEDSA-----RRRKDDFWVLDTKAIP 303 (383)
Q Consensus 230 ~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~-~~~~~l~i~GG~~~~-----~~~~~~~~~~d~~~~~ 303 (383)
.-++-.+.|++.. .+=..++--........|++-...-+.. -....|...-|+... ....+.+|+|++.+..
T Consensus 460 ~El~L~f~y~I~~--E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~ 537 (723)
T KOG2437|consen 460 TELNLFFSYDIDS--EHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNS 537 (723)
T ss_pred eEEeehhcceecc--ccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccc
Confidence 3344455666554 2222221000111111222211111111 134567777777543 2246789999998655
Q ss_pred ccccccccccccccccccceeecc-----CCCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEE
Q 016774 304 FTSVQQSMLDSRGLLLNMWKRLRA-----EGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVE 378 (383)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~ 378 (383)
|.-+..-.....|.. .-..+.- .-..|.+|.+|+.+++....-.|.+||... -+.+..-..+|-|.++
T Consensus 538 w~cI~~I~~~~~d~d--tvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~-----~~~~~~m~l~dfW~l~ 610 (723)
T KOG2437|consen 538 WSCIYKIDQAAKDND--TVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPG-----KSCSPKMRLDDFWSLK 610 (723)
T ss_pred hhhHhhhHHhhccCC--ceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCC-----CCCCchhhhhhHHHHh
Confidence 543332221111111 1112110 123578999998888776778999999943 2223333345666655
Q ss_pred e
Q 016774 379 L 379 (383)
Q Consensus 379 ~ 379 (383)
|
T Consensus 611 I 611 (723)
T KOG2437|consen 611 I 611 (723)
T ss_pred h
Confidence 4
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.67 E-value=6.8e-17 Score=147.13 Aligned_cols=195 Identities=19% Similarity=0.342 Sum_probs=149.3
Q ss_pred cccceEEcCC---------CCCCCCcceeEEEECC--EEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCC
Q 016774 78 GMLKWQKVNS---------GIPSGRFGHTCVVIGD--CLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSI 146 (383)
Q Consensus 78 ~~~~W~~~~~---------~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~ 146 (383)
....|.+++. ..|..|.+|.|+...+ .||++||+++ -+.+.|.|.|.. ..+.|..+...+.
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG-~~~l~DFW~Y~v-------~e~~W~~iN~~t~ 308 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG-TQDLADFWAYSV-------KENQWTCINRDTE 308 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc-chhHHHHHhhcC-------CcceeEEeecCCC
Confidence 4448887642 3588999999999865 6999999965 456889999999 5889999988888
Q ss_pred CCCccccceeEEE-CCcEEEEEcccCCCC-----CcccceEEEeccCCcccCceEEcc----cCCCCCCCCCceEEEEcC
Q 016774 147 APPARGAHAACCI-DNRKMVIHAGIGLYG-----LRLGDTWVLELSENFCFGSWQQLV----THPSPPARSGHSLTRIGG 216 (383)
Q Consensus 147 ~p~~r~~~~~~~~-~~~~i~v~GG~~~~~-----~~~~~~~~~d~~~~~~~~~W~~~~----~~~~p~~r~~~~~~~~~~ 216 (383)
.|..|.+|.++.. ...++|+.|-+-... ...+|+|+||.+++ .|..+. ....|...+.|.+++.+
T Consensus 309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~----~W~~ls~dt~~dGGP~~vfDHqM~Vd~- 383 (723)
T KOG2437|consen 309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN----TWMLLSEDTAADGGPKLVFDHQMCVDS- 383 (723)
T ss_pred CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc----eeEEecccccccCCcceeecceeeEec-
Confidence 9999999999885 335899998753221 23579999999999 999998 23578899999999995
Q ss_pred CE--EEEEcccCC--CCCccccEEEEEcccCccceEEeccccc--CCCCCCCCCceeeEEEEE-cCCEEEEEcCcCCC
Q 016774 217 NR--TVLFGGRGV--GYEVLNDVWFLDVYEGFFKWVQIPYELQ--NIPAGFSLPRVGHSATLI-LGGRVLIYGGEDSA 287 (383)
Q Consensus 217 ~~--i~v~GG~~~--~~~~~~~v~~~~~~~~~~~W~~i~~~~~--~~~~~~p~~r~~~~~~~~-~~~~l~i~GG~~~~ 287 (383)
++ +||+||+.. ....+..+|.|+... ..|..+..... ..-......|.+|++-.. .+..+|++||....
T Consensus 384 ~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~--~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 384 EKHMIYVFGGRILTCNEPQFSGLYAFNCQC--QTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred CcceEEEecCeeccCCCccccceEEEecCC--ccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 55 999999932 334677899999999 99987752111 111223456788888765 56789999998654
No 31
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.20 E-value=4.8e-09 Score=90.08 Aligned_cols=189 Identities=14% Similarity=0.123 Sum_probs=121.2
Q ss_pred CCCCCcceeEEEE-C------CEEEEEcCccCCCCCccceeeeeccccc-CCcccccEEEccCCCCCCCccccceeEEE-
Q 016774 89 IPSGRFGHTCVVI-G------DCLVLFGGINDRGNRHNDTWIGQIACHE-NLGITLSWRLLDVGSIAPPARGAHAACCI- 159 (383)
Q Consensus 89 ~p~~r~~~~~~~~-~------~~iyv~GG~~~~~~~~~~~~~~d~~~~~-~~~~~~~W~~~~~~~~~p~~r~~~~~~~~- 159 (383)
+|+.|.- +++.+ + ...+|.||++.+....+.+|++.+.... +...+....+....++.|.+|++|++.++
T Consensus 19 LPPLR~P-Av~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~ 97 (337)
T PF03089_consen 19 LPPLRCP-AVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVH 97 (337)
T ss_pred CCCCCCc-cEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEE
Confidence 4666654 44444 1 1277889998888888899998886554 45557777888888999999999998876
Q ss_pred --CCcEEEEEcccCCCC--C-----------cccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcc
Q 016774 160 --DNRKMVIHAGIGLYG--L-----------RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG 224 (383)
Q Consensus 160 --~~~~i~v~GG~~~~~--~-----------~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG 224 (383)
++...++|||+..-. + ....++.+|++.+ -++.-....+-.....|-+.+- ++.+|++||
T Consensus 98 SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG----C~tah~lpEl~dG~SFHvslar-~D~VYilGG 172 (337)
T PF03089_consen 98 SRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG----CCTAHTLPELQDGQSFHVSLAR-NDCVYILGG 172 (337)
T ss_pred ECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc----ccccccchhhcCCeEEEEEEec-CceEEEEcc
Confidence 344689999975221 1 1235788998876 5554433355566777877776 699999999
Q ss_pred cCCCCC-ccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEE--cCCEEEEEcCcCCCCCC
Q 016774 225 RGVGYE-VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI--LGGRVLIYGGEDSARRR 290 (383)
Q Consensus 225 ~~~~~~-~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~--~~~~l~i~GG~~~~~~~ 290 (383)
+..... ....++++.++- -.=+.. -....++....-.++++. .....+|+||+..+.+.
T Consensus 173 Hsl~sd~Rpp~l~rlkVdL--llGSP~-----vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQK 234 (337)
T PF03089_consen 173 HSLESDSRPPRLYRLKVDL--LLGSPA-----VSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQK 234 (337)
T ss_pred EEccCCCCCCcEEEEEEee--cCCCce-----eEEEECCCCceEeeeeEeecCCCceEEEeccccccee
Confidence 943322 233567766543 100000 011223444444444443 45779999999765443
No 32
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.17 E-value=3.5e-09 Score=90.92 Aligned_cols=142 Identities=20% Similarity=0.270 Sum_probs=101.7
Q ss_pred ccccceeEEECC------cEEEEEcccCCCCCcccceEEEeccCCcc----cCceEEcc-cCCCCCCCCCceEEEE---c
Q 016774 150 ARGAHAACCIDN------RKMVIHAGIGLYGLRLGDTWVLELSENFC----FGSWQQLV-THPSPPARSGHSLTRI---G 215 (383)
Q Consensus 150 ~r~~~~~~~~~~------~~i~v~GG~~~~~~~~~~~~~~d~~~~~~----~~~W~~~~-~~~~p~~r~~~~~~~~---~ 215 (383)
|..+.|.+.+.+ ...++.||+.+++..++.+|++..+++.. ++.+++.. .+..|.+|++|++.++ +
T Consensus 21 PLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrG 100 (337)
T PF03089_consen 21 PLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRG 100 (337)
T ss_pred CCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECC
Confidence 334555555521 35778899999988899999999887642 33344444 7889999999998877 3
Q ss_pred CCEEEEEcccCC-------------CCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEc
Q 016774 216 GNRTVLFGGRGV-------------GYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYG 282 (383)
Q Consensus 216 ~~~i~v~GG~~~-------------~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~G 282 (383)
+...++|||+.- --.....|+.+|++- ...+.- ....+..+...|.+.+ -++.+|++|
T Consensus 101 Kta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleF--GC~tah------~lpEl~dG~SFHvsla-r~D~VYilG 171 (337)
T PF03089_consen 101 KTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEF--GCCTAH------TLPELQDGQSFHVSLA-RNDCVYILG 171 (337)
T ss_pred cEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccc--cccccc------cchhhcCCeEEEEEEe-cCceEEEEc
Confidence 345899999821 111345789999998 777665 2356677788898886 899999999
Q ss_pred CcCCC-CCCCCcEEEEEcC
Q 016774 283 GEDSA-RRRKDDFWVLDTK 300 (383)
Q Consensus 283 G~~~~-~~~~~~~~~~d~~ 300 (383)
|..-. +.+...++.+..+
T Consensus 172 GHsl~sd~Rpp~l~rlkVd 190 (337)
T PF03089_consen 172 GHSLESDSRPPRLYRLKVD 190 (337)
T ss_pred cEEccCCCCCCcEEEEEEe
Confidence 98754 3456678887765
No 33
>PF13964 Kelch_6: Kelch motif
Probab=99.10 E-value=2.4e-10 Score=74.43 Aligned_cols=50 Identities=34% Similarity=0.601 Sum_probs=44.5
Q ss_pred CCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCcc
Q 016774 92 GRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPAR 151 (383)
Q Consensus 92 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r 151 (383)
+|.+|++++++++|||+||........+++++||+ ++++|+++.+ +|.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~-------~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDP-------ETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcC-------CCCcEEECCC---CCCCC
Confidence 68999999999999999998776677999999999 7999999875 67776
No 34
>PLN02772 guanylate kinase
Probab=99.05 E-value=1e-09 Score=100.92 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=78.8
Q ss_pred CCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcc
Q 016774 90 PSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAG 169 (383)
Q Consensus 90 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG 169 (383)
..++..|+++.+++++||+||.++.+...+.+++||. .+.+|......|..|.||.+|+++.+++++|+|+++
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~-------~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDK-------ITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEEC-------CCCcEecccccCCCCCCCCcceEEEECCceEEEEeC
Confidence 4488999999999999999999886657899999999 699999999999999999999999998889999998
Q ss_pred cCCCCCcccceEEEeccCC
Q 016774 170 IGLYGLRLGDTWVLELSEN 188 (383)
Q Consensus 170 ~~~~~~~~~~~~~~d~~~~ 188 (383)
....+ +++|.+.++|.
T Consensus 95 ~~~~~---~~~w~l~~~t~ 110 (398)
T PLN02772 95 GSAPD---DSIWFLEVDTP 110 (398)
T ss_pred CCCCc---cceEEEEcCCH
Confidence 65443 78999998885
No 35
>PF13964 Kelch_6: Kelch motif
Probab=99.02 E-value=9.2e-10 Score=71.62 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=44.2
Q ss_pred ccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCC
Q 016774 150 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPAR 206 (383)
Q Consensus 150 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r 206 (383)
||..|+++.+++ +|||+||.......++++++||+.++ +|++++ ++|.+|
T Consensus 1 pR~~~s~v~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~--~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGG-KIYVFGGYDNSGKYSNDVERYDPETN----TWEQLP--PMPTPR 50 (50)
T ss_pred CCccCEEEEECC-EEEEECCCCCCCCccccEEEEcCCCC----cEEECC--CCCCCC
Confidence 688999999888 99999998664668999999999999 999998 777776
No 36
>PLN02772 guanylate kinase
Probab=98.97 E-value=4.8e-09 Score=96.52 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=76.9
Q ss_pred CCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEccc
Q 016774 147 APPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGR 225 (383)
Q Consensus 147 ~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~ 225 (383)
.+.|+.+|+++.+++ ++||+||.+..+...+++++||..+. +|.... .+..|.+|.+|+++++++++|+|+++.
T Consensus 21 ~~~~~~~~tav~igd-k~yv~GG~~d~~~~~~~v~i~D~~t~----~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 21 GVKPKNRETSVTIGD-KTYVIGGNHEGNTLSIGVQILDKITN----NWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred cCCCCCcceeEEECC-EEEEEcccCCCccccceEEEEECCCC----cEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 456888999999998 99999998776557889999999998 999988 789999999999999999999999877
Q ss_pred CCCCCccccEEEEEccc
Q 016774 226 GVGYEVLNDVWFLDVYE 242 (383)
Q Consensus 226 ~~~~~~~~~v~~~~~~~ 242 (383)
... -+++|.+.+.+
T Consensus 96 ~~~---~~~~w~l~~~t 109 (398)
T PLN02772 96 SAP---DDSIWFLEVDT 109 (398)
T ss_pred CCC---ccceEEEEcCC
Confidence 432 36799999987
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.90 E-value=1.5e-09 Score=70.28 Aligned_cols=45 Identities=27% Similarity=0.612 Sum_probs=30.6
Q ss_pred ccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc
Q 016774 150 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 198 (383)
Q Consensus 150 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 198 (383)
||++|+++.+.+++|||+||.+..+..++++|+||++++ +|++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~----~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN----TWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT----EEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC----EEEECC
Confidence 699999999976799999999877678999999999999 999996
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.89 E-value=4.8e-09 Score=67.81 Aligned_cols=47 Identities=43% Similarity=0.808 Sum_probs=42.1
Q ss_pred CCEEEEEcccC-CCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEE
Q 016774 216 GNRTVLFGGRG-VGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL 272 (383)
Q Consensus 216 ~~~i~v~GG~~-~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~ 272 (383)
+++||||||.. .....++++|+||+.+ .+|+++ ++.|.+|.+|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~--~~W~~~--------~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDT--NTWTRI--------GDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCC--CEEEEC--------CCCCCCccceEEEE
Confidence 47899999997 4677899999999999 999998 67899999999986
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.88 E-value=5.1e-09 Score=67.68 Aligned_cols=47 Identities=40% Similarity=0.780 Sum_probs=41.3
Q ss_pred cEEEEEcccC-CCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEE
Q 016774 162 RKMVIHAGIG-LYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRI 214 (383)
Q Consensus 162 ~~i~v~GG~~-~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 214 (383)
++|||+||.+ .....++++|+||++++ +|+++. +.|.+|.+|+++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~----~W~~~~--~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTN----TWTRIG--DLPPPRSGHTATVI 49 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCC----EEEECC--CCCCCccceEEEEC
Confidence 4899999997 35678999999999998 999995 88999999999864
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.85 E-value=3.6e-09 Score=68.52 Aligned_cols=44 Identities=39% Similarity=0.770 Sum_probs=30.8
Q ss_pred CCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774 205 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 250 (383)
Q Consensus 205 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i 250 (383)
||.+|+++.++++.|||+||.......++++|+||+++ ++|+++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~--~~W~~~ 44 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIET--NTWTRL 44 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTT--TEEEE-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCC--CEEEEC
Confidence 69999999997799999999976667999999999999 999998
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.78 E-value=1.7e-08 Score=65.17 Aligned_cols=45 Identities=33% Similarity=0.705 Sum_probs=39.7
Q ss_pred CCcceeEEEECCEEEEEcCc--cCCCCCccceeeeecccccCCcccccEEEccC
Q 016774 92 GRFGHTCVVIGDCLVLFGGI--NDRGNRHNDTWIGQIACHENLGITLSWRLLDV 143 (383)
Q Consensus 92 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~ 143 (383)
+|.+|++++++++|||+||. .......+++++||+ ++.+|+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~-------~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDT-------ETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEEC-------CCCEEeecCC
Confidence 68999999999999999999 344566899999999 7999999875
No 42
>PF13854 Kelch_5: Kelch motif
Probab=98.70 E-value=3.4e-08 Score=61.38 Aligned_cols=38 Identities=37% Similarity=0.805 Sum_probs=34.5
Q ss_pred CCCCCcceeEEEECCEEEEEcCccC-CCCCccceeeeec
Q 016774 89 IPSGRFGHTCVVIGDCLVLFGGIND-RGNRHNDTWIGQI 126 (383)
Q Consensus 89 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~ 126 (383)
+|.+|.+|+++.++++|||+||... .....+++|+||+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l 39 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDL 39 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEEC
Confidence 4889999999999999999999983 6677999999998
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.70 E-value=1.8e-08 Score=64.53 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=40.5
Q ss_pred CCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccC
Q 016774 92 GRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDV 143 (383)
Q Consensus 92 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~ 143 (383)
||.+|++++++++|||+||.......++++++||+ .+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-------~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDP-------ETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEET-------TTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeC-------CCCEEEEcCC
Confidence 68999999999999999999886778999999999 6999999864
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.69 E-value=2.7e-08 Score=63.75 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=39.5
Q ss_pred ccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc
Q 016774 150 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 198 (383)
Q Consensus 150 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 198 (383)
||..|+++.+++ +||++||.......++++++||+.++ +|++++
T Consensus 1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETN----TWEELP 44 (47)
T ss_dssp -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTT----EEEEEE
T ss_pred CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCC----EEEEcC
Confidence 688999999888 99999999776678999999999999 999987
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.66 E-value=5.4e-08 Score=60.45 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=35.4
Q ss_pred CCCccccceeEEECCcEEEEEcccCC-CCCcccceEEEeccC
Q 016774 147 APPARGAHAACCIDNRKMVIHAGIGL-YGLRLGDTWVLELSE 187 (383)
Q Consensus 147 ~p~~r~~~~~~~~~~~~i~v~GG~~~-~~~~~~~~~~~d~~~ 187 (383)
+|.+|++|+++.+++ +|||+||... ....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~-~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGN-NIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECC-EEEEEcCccCCCCCEECcEEEEECCC
Confidence 488999999999987 9999999973 667899999999876
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.62 E-value=1e-07 Score=61.51 Aligned_cols=44 Identities=30% Similarity=0.586 Sum_probs=38.6
Q ss_pred ccccceeEEECCcEEEEEccc--CCCCCcccceEEEeccCCcccCceEEcc
Q 016774 150 ARGAHAACCIDNRKMVIHAGI--GLYGLRLGDTWVLELSENFCFGSWQQLV 198 (383)
Q Consensus 150 ~r~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 198 (383)
||.+|+++..++ +|||+||. .......++++.||++++ +|+.++
T Consensus 1 ~r~~hs~~~~~~-kiyv~GG~~~~~~~~~~~~v~~~d~~t~----~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDG-KIYVFGGYGTDNGGSSSNDVWVFDTETN----QWTELS 46 (49)
T ss_pred CccceEEEEECC-EEEEECCcccCCCCcccceeEEEECCCC----EEeecC
Confidence 688999998888 99999999 444467899999999999 999987
No 47
>smart00612 Kelch Kelch domain.
Probab=98.25 E-value=2e-06 Score=54.76 Aligned_cols=46 Identities=33% Similarity=0.537 Sum_probs=39.4
Q ss_pred EEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEc
Q 016774 163 KMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIG 215 (383)
Q Consensus 163 ~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 215 (383)
+||++||... ...++++++||+.++ +|+.++ ++|.+|..|+++.++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~~~----~W~~~~--~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPETN----KWTPLP--SMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCCCC----eEccCC--CCCCccccceEEEeC
Confidence 4899999854 356889999999999 999988 889999999988773
No 48
>smart00612 Kelch Kelch domain.
Probab=98.12 E-value=3.8e-06 Score=53.44 Aligned_cols=46 Identities=24% Similarity=0.428 Sum_probs=38.0
Q ss_pred EEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEEC
Q 016774 104 CLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCID 160 (383)
Q Consensus 104 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 160 (383)
+||++||... ....+++++||+ .+++|+.+.+ +|.+|..|+++.++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~-------~~~~W~~~~~---~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDP-------ETNKWTPLPS---MPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECC-------CCCeEccCCC---CCCccccceEEEeC
Confidence 4899999864 456789999999 6999998765 78999999888765
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.86 E-value=0.002 Score=56.27 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=87.7
Q ss_pred eeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCC
Q 016774 122 WIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP 201 (383)
Q Consensus 122 ~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~ 201 (383)
..||+ .+++++.+.. ..-..+.+.+.+.|+.+++.||... + ...+..|++.+...+-.|.+... .
T Consensus 49 ~~yD~-------~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~-G--~~~ir~~~p~~~~~~~~w~e~~~-~ 113 (243)
T PF07250_consen 49 VEYDP-------NTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDND-G--NKAIRIFTPCTSDGTCDWTESPN-D 113 (243)
T ss_pred EEEec-------CCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCc-c--ccceEEEecCCCCCCCCceECcc-c
Confidence 35777 5888887754 2344455555667889999999743 2 34567777765111227887762 3
Q ss_pred CCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcc-c---CccceEEecccccCCCCCCCCCceeeEEEEEcCCE
Q 016774 202 SPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVY-E---GFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGR 277 (383)
Q Consensus 202 ~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~-~---~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~ 277 (383)
+-.+|-..++..+.+++++|+||.... .+.|-+. . ....|..+. ......+...+=+.-+ ..+++
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~----~~~~~~~~nlYP~~~l-lPdG~ 182 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLS----QTSDTLPNNLYPFVHL-LPDGN 182 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecch----hhhccCccccCceEEE-cCCCC
Confidence 778899999999999999999998521 2222222 1 001222221 1111233333334333 48999
Q ss_pred EEEEcCcCCCCCCCCcEEEEEcC
Q 016774 278 VLIYGGEDSARRRKDDFWVLDTK 300 (383)
Q Consensus 278 l~i~GG~~~~~~~~~~~~~~d~~ 300 (383)
|++++... ..+||..
T Consensus 183 lFi~an~~--------s~i~d~~ 197 (243)
T PF07250_consen 183 LFIFANRG--------SIIYDYK 197 (243)
T ss_pred EEEEEcCC--------cEEEeCC
Confidence 99999863 3577876
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.71 E-value=0.0055 Score=53.58 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=85.0
Q ss_pred cccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeE
Q 016774 78 GMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAAC 157 (383)
Q Consensus 78 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~ 157 (383)
.+++++.+....-.=-++++ ..-++++.+.||..+.. +.+-.|+... ...+..|.+.... +..+|.+.+++
T Consensus 54 ~tn~~rpl~v~td~FCSgg~-~L~dG~ll~tGG~~~G~---~~ir~~~p~~---~~~~~~w~e~~~~--m~~~RWYpT~~ 124 (243)
T PF07250_consen 54 NTNTFRPLTVQTDTFCSGGA-FLPDGRLLQTGGDNDGN---KAIRIFTPCT---SDGTCDWTESPND--MQSGRWYPTAT 124 (243)
T ss_pred CCCcEEeccCCCCCcccCcC-CCCCCCEEEeCCCCccc---cceEEEecCC---CCCCCCceECccc--ccCCCccccce
Confidence 44477776422222222222 22356799999986532 3455677642 1135678876432 77899999999
Q ss_pred EECCcEEEEEcccCCCCCcccceEEEeccC--CcccCceEEcc--cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccc
Q 016774 158 CIDNRKMVIHAGIGLYGLRLGDTWVLELSE--NFCFGSWQQLV--THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLN 233 (383)
Q Consensus 158 ~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~--~~~~~~W~~~~--~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~ 233 (383)
.+.|++++|+||.. +..+.|-+.. ......|..+. ....+...+=+ +..+.+++||+++...
T Consensus 125 ~L~DG~vlIvGG~~------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~-~~llPdG~lFi~an~~------- 190 (243)
T PF07250_consen 125 TLPDGRVLIVGGSN------NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPF-VHLLPDGNLFIFANRG------- 190 (243)
T ss_pred ECCCCCEEEEeCcC------CCcccccCCccCCCCceeeecchhhhccCccccCce-EEEcCCCCEEEEEcCC-------
Confidence 99999999999975 2234443331 11112333232 11223333333 4455579999998863
Q ss_pred cEEEEEcccCccce-EEe
Q 016774 234 DVWFLDVYEGFFKW-VQI 250 (383)
Q Consensus 234 ~v~~~~~~~~~~~W-~~i 250 (383)
-.+||..+ +++ +.+
T Consensus 191 -s~i~d~~~--n~v~~~l 205 (243)
T PF07250_consen 191 -SIIYDYKT--NTVVRTL 205 (243)
T ss_pred -cEEEeCCC--CeEEeeC
Confidence 46788888 766 444
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.30 E-value=1.1 Score=42.77 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=106.0
Q ss_pred ceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCC-------CCCCCcceeEEEECCEEEEEcCccCCC
Q 016774 43 SLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSG-------IPSGRFGHTCVVIGDCLVLFGGINDRG 115 (383)
Q Consensus 43 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-------~p~~r~~~~~~~~~~~iyv~GG~~~~~ 115 (383)
+.++.++++|+.... ..++.++..+ ....|+.-... ...++...+.++.++++|+.+. .
T Consensus 64 sPvv~~~~vy~~~~~-------g~l~ald~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~--- 129 (394)
T PRK11138 64 HPAVAYNKVYAADRA-------GLVKALDADT---GKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-K--- 129 (394)
T ss_pred ccEEECCEEEEECCC-------CeEEEEECCC---CcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-C---
Confidence 345678899987642 3567777644 33488753211 0112333456677888887542 1
Q ss_pred CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceE
Q 016774 116 NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQ 195 (383)
Q Consensus 116 ~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~ 195 (383)
..++.+|.. +-+..|+.-... +. ..+.+.. ++.+|+..+ ...++.+|++++ +..|+
T Consensus 130 ---g~l~ald~~-----tG~~~W~~~~~~-----~~-~ssP~v~-~~~v~v~~~-------~g~l~ald~~tG--~~~W~ 185 (394)
T PRK11138 130 ---GQVYALNAE-----DGEVAWQTKVAG-----EA-LSRPVVS-DGLVLVHTS-------NGMLQALNESDG--AVKWT 185 (394)
T ss_pred ---CEEEEEECC-----CCCCcccccCCC-----ce-ecCCEEE-CCEEEEECC-------CCEEEEEEccCC--CEeee
Confidence 248889872 135678764321 11 1222333 447777432 235899999876 45687
Q ss_pred EcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCc---eeeEEEE
Q 016774 196 QLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPR---VGHSATL 272 (383)
Q Consensus 196 ~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r---~~~~~~~ 272 (383)
.-...+....+...+-+.. ++.+|+..+. ..++.+|++++...|+.-.. ...+.....| ...+.+
T Consensus 186 ~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~---~~~~~~~~~~~~~~~~sP~- 253 (394)
T PRK11138 186 VNLDVPSLTLRGESAPATA-FGGAIVGGDN-------GRVSAVLMEQGQLIWQQRIS---QPTGATEIDRLVDVDTTPV- 253 (394)
T ss_pred ecCCCCcccccCCCCCEEE-CCEEEEEcCC-------CEEEEEEccCChhhheeccc---cCCCccchhcccccCCCcE-
Confidence 6542111111222233334 4666554332 24888998886667975310 0001000011 112223
Q ss_pred EcCCEEEEEcCcCCCCCCCCcEEEEEcCCC
Q 016774 273 ILGGRVLIYGGEDSARRRKDDFWVLDTKAI 302 (383)
Q Consensus 273 ~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~ 302 (383)
+.++.+|+.+. + ..++.+|+.+-
T Consensus 254 v~~~~vy~~~~-~------g~l~ald~~tG 276 (394)
T PRK11138 254 VVGGVVYALAY-N------GNLVALDLRSG 276 (394)
T ss_pred EECCEEEEEEc-C------CeEEEEECCCC
Confidence 36788887552 2 25889998743
No 52
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.81 E-value=0.46 Score=42.71 Aligned_cols=119 Identities=9% Similarity=0.057 Sum_probs=67.8
Q ss_pred EEEcccCCCCC-cccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccC
Q 016774 165 VIHAGIGLYGL-RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEG 243 (383)
Q Consensus 165 ~v~GG~~~~~~-~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~ 243 (383)
||-|-....+. ....+-.||+.+. +|..+..+ ... .-..+....++++|+.|-..........+-.||..+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~----qW~~~g~~--i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~- 73 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNS----QWSSPGNG--ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN- 73 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCC----EeecCCCC--ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC-
Confidence 34333444443 4567899999998 99988622 211 123344445677777776543332345689999999
Q ss_pred ccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEE
Q 016774 244 FFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLD 298 (383)
Q Consensus 244 ~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d 298 (383)
.+|+.+... ....+|.+.............+++.|.. ..+ ..-+..||
T Consensus 74 -~~w~~~~~~---~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~d 121 (281)
T PF12768_consen 74 -QTWSSLGGG---SSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYD 121 (281)
T ss_pred -CeeeecCCc---ccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEc
Confidence 999998510 0124566653333322134467777776 222 23355565
No 53
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.43 E-value=1.6 Score=37.99 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=99.8
Q ss_pred hhccccccceeeeecCCCCCCCCCCCccc-ceeee----CC-EEEEEccccCCCCCCCceEEEEeccCcccccceEEcCC
Q 016774 14 QVTQLESVSCRNISDADGDLVLPNPRASH-SLNFV----SN-CLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNS 87 (383)
Q Consensus 14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~-~~~~~----~~-~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 87 (383)
.++||.+.+|+.++..... +.....+ ...-+ ++ +|+.+.... .......+.+|+... .+|+.+..
T Consensus 17 ~V~NP~T~~~~~LP~~~~~---~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~-----~~Wr~~~~ 87 (230)
T TIGR01640 17 VVWNPSTGQSRWLPTPKSR---RSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGS-----NSWRTIEC 87 (230)
T ss_pred EEECCCCCCEEecCCCCCc---ccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCC-----CCcccccc
Confidence 3678999999999643211 0001111 11111 22 666665421 111234566777744 49999864
Q ss_pred CCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEE-ccCCCCCCCccc----cceeEEECCc
Q 016774 88 GIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRL-LDVGSIAPPARG----AHAACCIDNR 162 (383)
Q Consensus 88 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~-~~~~~~~p~~r~----~~~~~~~~~~ 162 (383)
.++........+.+++.+|-+.-.... .....+..||+ .+.+|.. +.. |..+. ....+..+ +
T Consensus 88 ~~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl-------~~E~f~~~i~~----P~~~~~~~~~~~L~~~~-G 154 (230)
T TIGR01640 88 SPPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDV-------SSERFKEFIPL----PCGNSDSVDYLSLINYK-G 154 (230)
T ss_pred CCCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEc-------ccceEeeeeec----CccccccccceEEEEEC-C
Confidence 333222222366778888877643221 11125888999 5888984 442 22221 12233344 4
Q ss_pred EEEEEcccCCCCCcccceEEEe-ccCCcccCceEEcccCCC-CCCCC---CceEEEEcCCEEEEEcccCCCCCccccEEE
Q 016774 163 KMVIHAGIGLYGLRLGDTWVLE-LSENFCFGSWQQLVTHPS-PPARS---GHSLTRIGGNRTVLFGGRGVGYEVLNDVWF 237 (383)
Q Consensus 163 ~i~v~GG~~~~~~~~~~~~~~d-~~~~~~~~~W~~~~~~~~-p~~r~---~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~ 237 (383)
++-++...... ..-++|.++ ...+ .|++.-.-+. +.+.. ........+++|++.-... . ..-+..
T Consensus 155 ~L~~v~~~~~~--~~~~IWvl~d~~~~----~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~---~~~~~~ 224 (230)
T TIGR01640 155 KLAVLKQKKDT--NNFDLWVLNDAGKQ----EWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N---PFYIFY 224 (230)
T ss_pred EEEEEEecCCC--CcEEEEEECCCCCC----ceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C---ceEEEE
Confidence 77666543211 124788886 3344 7997652121 11111 1234444567877765431 0 113788
Q ss_pred EEccc
Q 016774 238 LDVYE 242 (383)
Q Consensus 238 ~~~~~ 242 (383)
||+.+
T Consensus 225 y~~~~ 229 (230)
T TIGR01640 225 YNVGE 229 (230)
T ss_pred EeccC
Confidence 88765
No 54
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.26 E-value=1.8 Score=37.63 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=79.7
Q ss_pred ceeeeecccccCCcccccEEEccCCCCCCCccccc-eeEEE----CCcEEEEEcccCCCCCcccceEEEeccCCcccCce
Q 016774 120 DTWIGQIACHENLGITLSWRLLDVGSIAPPARGAH-AACCI----DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSW 194 (383)
Q Consensus 120 ~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~-~~~~~----~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W 194 (383)
.+++.|+ .|.+|..++.....+.....+ ..... ++-+++.+.... .......+.+|++.++ .|
T Consensus 15 ~~~V~NP-------~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~~----~W 82 (230)
T TIGR01640 15 RLVVWNP-------STGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGSN----SW 82 (230)
T ss_pred cEEEECC-------CCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCCC----Cc
Confidence 5788888 599999986422100001111 11111 122455444321 1112356889999998 99
Q ss_pred EEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEE-ecccccCCCCCCCCCce----eeE
Q 016774 195 QQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQ-IPYELQNIPAGFSLPRV----GHS 269 (383)
Q Consensus 195 ~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~-i~~~~~~~~~~~p~~r~----~~~ 269 (383)
..+... .+........+.+ ++.+|-+.-.... .....|..||+.+ .+|.. ++ +|..+. ...
T Consensus 83 r~~~~~-~~~~~~~~~~v~~-~G~lyw~~~~~~~-~~~~~IvsFDl~~--E~f~~~i~---------~P~~~~~~~~~~~ 148 (230)
T TIGR01640 83 RTIECS-PPHHPLKSRGVCI-NGVLYYLAYTLKT-NPDYFIVSFDVSS--ERFKEFIP---------LPCGNSDSVDYLS 148 (230)
T ss_pred cccccC-CCCccccCCeEEE-CCEEEEEEEECCC-CCcEEEEEEEccc--ceEeeeee---------cCccccccccceE
Confidence 998721 1111112225566 5777776543211 1112699999999 99995 64 222221 222
Q ss_pred EEEEcCCEEEEEcCcCCCCCCCCcEEEEE
Q 016774 270 ATLILGGRVLIYGGEDSARRRKDDFWVLD 298 (383)
Q Consensus 270 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~d 298 (383)
.+ ..+++|-++....... .-++|+++
T Consensus 149 L~-~~~G~L~~v~~~~~~~--~~~IWvl~ 174 (230)
T TIGR01640 149 LI-NYKGKLAVLKQKKDTN--NFDLWVLN 174 (230)
T ss_pred EE-EECCEEEEEEecCCCC--cEEEEEEC
Confidence 33 3678888776543211 24788876
No 55
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.29 E-value=0.76 Score=41.35 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=60.7
Q ss_pred EEccc-CCCCC-ccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEE
Q 016774 221 LFGGR-GVGYE-VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLD 298 (383)
Q Consensus 221 v~GG~-~~~~~-~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d 298 (383)
++||. ..... ....+..||+++ .+|..+. .--.... ..+....+++||+.|-+...+.....+-.||
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~--~qW~~~g--------~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd 70 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDN--SQWSSPG--------NGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYD 70 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCC--CEeecCC--------CCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEe
Confidence 35554 32222 466799999999 9999983 2222222 2222225778888887665553455678888
Q ss_pred cCCCcccccccccccccccccccceeeccC--CCCCCCccceeeeecCCCcEEEEEcCc
Q 016774 299 TKAIPFTSVQQSMLDSRGLLLNMWKRLRAE--GYKPNCRSFHRACPDYSGRYLYVFGGM 355 (383)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~~p~~r~~~~~~~~~~~~~l~v~GG~ 355 (383)
.+ +.+|..+... ...|.+-.. -.....+..++++.|..
T Consensus 71 ~~------------------~~~w~~~~~~~s~~ipgpv~a-~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 71 FK------------------NQTWSSLGGGSSNSIPGPVTA-LTFISNDGSNFWVAGRS 110 (281)
T ss_pred cC------------------CCeeeecCCcccccCCCcEEE-EEeeccCCceEEEecee
Confidence 88 6788877552 134433221 11122345677777765
No 56
>PRK13684 Ycf48-like protein; Provisional
Probab=93.67 E-value=6 Score=36.77 Aligned_cols=204 Identities=11% Similarity=0.104 Sum_probs=97.4
Q ss_pred cccceEEcCCCCCCCCcceeEEEECC-EEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCcccccee
Q 016774 78 GMLKWQKVNSGIPSGRFGHTCVVIGD-CLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAA 156 (383)
Q Consensus 78 ~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~ 156 (383)
...+|+++......+.....+..+++ .+++.|.. . .+++=+- .-.+|+.+... ..-..+..
T Consensus 117 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-G------~i~~S~D-------gG~tW~~~~~~----~~g~~~~i 178 (334)
T PRK13684 117 GGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-G------AIYRTTD-------GGKNWEALVED----AAGVVRNL 178 (334)
T ss_pred CCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-c------eEEEECC-------CCCCceeCcCC----CcceEEEE
Confidence 44599988532112222233444443 36655532 1 2332221 36789987542 12223344
Q ss_pred EEECCcEEEEEcccCCCCCcccceEEE-eccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccE
Q 016774 157 CCIDNRKMVIHAGIGLYGLRLGDTWVL-ELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDV 235 (383)
Q Consensus 157 ~~~~~~~i~v~GG~~~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v 235 (383)
....++.+++.|.. + .++.- +-... +|+.+. .+..+..+++....++.++++|... .
T Consensus 179 ~~~~~g~~v~~g~~---G----~i~~s~~~gg~----tW~~~~---~~~~~~l~~i~~~~~g~~~~vg~~G--------~ 236 (334)
T PRK13684 179 RRSPDGKYVAVSSR---G----NFYSTWEPGQT----AWTPHQ---RNSSRRLQSMGFQPDGNLWMLARGG--------Q 236 (334)
T ss_pred EECCCCeEEEEeCC---c----eEEEEcCCCCC----eEEEee---CCCcccceeeeEcCCCCEEEEecCC--------E
Confidence 44455445544432 2 23332 33334 799885 2444555556666668888887653 2
Q ss_pred EEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccccccccccccc
Q 016774 236 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSR 315 (383)
Q Consensus 236 ~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 315 (383)
.++....+..+|+.+. .........-+++....++.+++.|..-. ++ .....
T Consensus 237 ~~~~s~d~G~sW~~~~------~~~~~~~~~l~~v~~~~~~~~~~~G~~G~-------v~-~S~d~-------------- 288 (334)
T PRK13684 237 IRFNDPDDLESWSKPI------IPEITNGYGYLDLAYRTPGEIWAGGGNGT-------LL-VSKDG-------------- 288 (334)
T ss_pred EEEccCCCCCcccccc------CCccccccceeeEEEcCCCCEEEEcCCCe-------EE-EeCCC--------------
Confidence 3332122226899763 11010111123333324667888775421 22 21111
Q ss_pred ccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCc
Q 016774 316 GLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM 355 (383)
Q Consensus 316 ~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~ 355 (383)
..+|+.+......|. ..+.+ +..++++.++.|..
T Consensus 289 ---G~tW~~~~~~~~~~~--~~~~~-~~~~~~~~~~~G~~ 322 (334)
T PRK13684 289 ---GKTWEKDPVGEEVPS--NFYKI-VFLDPEKGFVLGQR 322 (334)
T ss_pred ---CCCCeECCcCCCCCc--ceEEE-EEeCCCceEEECCC
Confidence 468998754222332 22334 33356788888865
No 57
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.57 E-value=4.5 Score=37.70 Aligned_cols=133 Identities=16% Similarity=0.157 Sum_probs=75.1
Q ss_pred ECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCc----
Q 016774 101 IGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLR---- 176 (383)
Q Consensus 101 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~---- 176 (383)
.+++|+..+.. ..+.+||. ++..-...+. ++.+...-.++.+++ +||++.........
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt-------~t~av~~~P~---l~~pk~~pisv~VG~-~LY~m~~~~~~~~~~~~~ 136 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDT-------DTRAVATGPR---LHSPKRCPISVSVGD-KLYAMDRSPFPEPAGRPD 136 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEEC-------CCCeEeccCC---CCCCCcceEEEEeCC-eEEEeeccCccccccCcc
Confidence 37888888664 23778998 4555554332 444455556677787 69999876322211
Q ss_pred --ccceEEEec----cCCcccCceEEcccCCCCCCCC-------CceEEEEcCCEEEE-EcccCCCCCccccEEEEEccc
Q 016774 177 --LGDTWVLEL----SENFCFGSWQQLVTHPSPPARS-------GHSLTRIGGNRTVL-FGGRGVGYEVLNDVWFLDVYE 242 (383)
Q Consensus 177 --~~~~~~~d~----~~~~~~~~W~~~~~~~~p~~r~-------~~~~~~~~~~~i~v-~GG~~~~~~~~~~v~~~~~~~ 242 (383)
.=++..|+. ........|+.++ +.|..+. ..+-+++++..|+| .-|.. ...|.||+.+
T Consensus 137 ~~~FE~l~~~~~~~~~~~~~~w~W~~LP--~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~ 208 (342)
T PF07893_consen 137 FPCFEALVYRPPPDDPSPEESWSWRSLP--PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTES 208 (342)
T ss_pred ceeEEEeccccccccccCCCcceEEcCC--CCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCC
Confidence 112333331 1223456788876 2232221 12222334577777 43331 2379999999
Q ss_pred CccceEEecccccCCCCCCCCCceeeE
Q 016774 243 GFFKWVQIPYELQNIPAGFSLPRVGHS 269 (383)
Q Consensus 243 ~~~~W~~i~~~~~~~~~~~p~~r~~~~ 269 (383)
.+|+++ +++..|-.+.+
T Consensus 209 --~~W~~~--------GdW~LPF~G~a 225 (342)
T PF07893_consen 209 --HEWRKH--------GDWMLPFHGQA 225 (342)
T ss_pred --cceeec--------cceecCcCCcc
Confidence 999999 56666655443
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.74 E-value=12 Score=35.50 Aligned_cols=195 Identities=14% Similarity=0.192 Sum_probs=102.6
Q ss_pred ccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccc
Q 016774 41 SHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHND 120 (383)
Q Consensus 41 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 120 (383)
....+..++++|+.+. ...++.+|..+ ....|+.-... . ...+-++.++.+|+..+. ..
T Consensus 113 ~~~~~v~~~~v~v~~~-------~g~l~ald~~t---G~~~W~~~~~~---~-~~ssP~v~~~~v~v~~~~-------g~ 171 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE-------KGQVYALNAED---GEVAWQTKVAG---E-ALSRPVVSDGLVLVHTSN-------GM 171 (394)
T ss_pred ccccEEECCEEEEEcC-------CCEEEEEECCC---CCCcccccCCC---c-eecCCEEECCEEEEECCC-------CE
Confidence 3445566888886432 23577787644 33488754211 1 122335567778875432 24
Q ss_pred eeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccC
Q 016774 121 TWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTH 200 (383)
Q Consensus 121 ~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~ 200 (383)
++.+|.. +-+..|+.-.... ....+...+.+...+ .+|+..+ ...++.+|..++ ...|+.....
T Consensus 172 l~ald~~-----tG~~~W~~~~~~~-~~~~~~~~sP~v~~~-~v~~~~~-------~g~v~a~d~~~G--~~~W~~~~~~ 235 (394)
T PRK11138 172 LQALNES-----DGAVKWTVNLDVP-SLTLRGESAPATAFG-GAIVGGD-------NGRVSAVLMEQG--QLIWQQRISQ 235 (394)
T ss_pred EEEEEcc-----CCCEeeeecCCCC-cccccCCCCCEEECC-EEEEEcC-------CCEEEEEEccCC--hhhheecccc
Confidence 8889982 1245687643211 001111223333344 6666432 135788888775 4468653211
Q ss_pred CCCC------CCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEc
Q 016774 201 PSPP------ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLIL 274 (383)
Q Consensus 201 ~~p~------~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~ 274 (383)
+... .....+.+.. ++.+|+.+.. ..++.+|+.++...|+.-. +. .. ..+ ..
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~-------~~---~~---~~~-~~ 293 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVV-GGVVYALAYN-------GNLVALDLRSGQIVWKREY-------GS---VN---DFA-VD 293 (394)
T ss_pred CCCccchhcccccCCCcEEE-CCEEEEEEcC-------CeEEEEECCCCCEEEeecC-------CC---cc---CcE-EE
Confidence 1000 0111233344 5777765432 2589999998666797641 11 11 123 36
Q ss_pred CCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774 275 GGRVLIYGGEDSARRRKDDFWVLDTKA 301 (383)
Q Consensus 275 ~~~l~i~GG~~~~~~~~~~~~~~d~~~ 301 (383)
++.||+.... ..++.+|.++
T Consensus 294 ~~~vy~~~~~-------g~l~ald~~t 313 (394)
T PRK11138 294 GGRIYLVDQN-------DRVYALDTRG 313 (394)
T ss_pred CCEEEEEcCC-------CeEEEEECCC
Confidence 8888886532 3588999874
No 59
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=90.99 E-value=11 Score=35.87 Aligned_cols=107 Identities=12% Similarity=0.142 Sum_probs=62.1
Q ss_pred CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceE
Q 016774 102 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTW 181 (383)
Q Consensus 102 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 181 (383)
+....+++|+.. =+|.||+ ++.+-+++.+....+ .+..+...+..++.++++-|.. .-++
T Consensus 269 G~~~i~~s~rrk------y~ysyDl-------e~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~------G~I~ 328 (514)
T KOG2055|consen 269 GHSVIFTSGRRK------YLYSYDL-------ETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNN------GHIH 328 (514)
T ss_pred CceEEEecccce------EEEEeec-------cccccccccCCCCcc-cchhheeEecCCCCeEEEcccC------ceEE
Confidence 343777777643 3789999 788888887654333 2333333332333566666642 3467
Q ss_pred EEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEccc
Q 016774 182 VLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE 242 (383)
Q Consensus 182 ~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~ 242 (383)
.+...|+ .|..-- .++......+.... ...|++.||.+ .||++|+..
T Consensus 329 lLhakT~----eli~s~--KieG~v~~~~fsSd-sk~l~~~~~~G-------eV~v~nl~~ 375 (514)
T KOG2055|consen 329 LLHAKTK----ELITSF--KIEGVVSDFTFSSD-SKELLASGGTG-------EVYVWNLRQ 375 (514)
T ss_pred eehhhhh----hhhhee--eeccEEeeEEEecC-CcEEEEEcCCc-------eEEEEecCC
Confidence 7766665 543221 22322333333333 36788888875 599999988
No 60
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.43 E-value=17 Score=34.71 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=57.6
Q ss_pred ceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccc-----eEEecccccCCCCCCCCCcee
Q 016774 193 SWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK-----WVQIPYELQNIPAGFSLPRVG 267 (383)
Q Consensus 193 ~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~-----W~~i~~~~~~~~~~~p~~r~~ 267 (383)
.|+.+. .+..+...++....++.+++.|... .++.-+... .. |+++. .+..+..
T Consensus 271 ~W~~~~---~~~~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~G--~~~~~~~f~~~~---------~~~~~~~ 329 (398)
T PLN00033 271 YWQPHN---RASARRIQNMGWRADGGLWLLTRGG-------GLYVSKGTG--LTEEDFDFEEAD---------IKSRGFG 329 (398)
T ss_pred ceEEec---CCCccceeeeeEcCCCCEEEEeCCc-------eEEEecCCC--Ccccccceeecc---------cCCCCcc
Confidence 389886 3334444455555568888887553 233333333 43 44442 2222332
Q ss_pred eEEEEE-cCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCC
Q 016774 268 HSATLI-LGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSG 346 (383)
Q Consensus 268 ~~~~~~-~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 346 (383)
...+.. .++.+++.|..-. ++.-... ..+|+++......+...+ .+.+...
T Consensus 330 l~~v~~~~d~~~~a~G~~G~-------v~~s~D~------------------G~tW~~~~~~~~~~~~ly---~v~f~~~ 381 (398)
T PLN00033 330 ILDVGYRSKKEAWAAGGSGI-------LLRSTDG------------------GKSWKRDKGADNIAANLY---SVKFFDD 381 (398)
T ss_pred eEEEEEcCCCcEEEEECCCc-------EEEeCCC------------------CcceeEccccCCCCccee---EEEEcCC
Confidence 222323 5677888886521 2222211 568998764333333333 3343445
Q ss_pred cEEEEEcC
Q 016774 347 RYLYVFGG 354 (383)
Q Consensus 347 ~~l~v~GG 354 (383)
++.|+.|-
T Consensus 382 ~~g~~~G~ 389 (398)
T PLN00033 382 KKGFVLGN 389 (398)
T ss_pred CceEEEeC
Confidence 78888883
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.03 E-value=16 Score=34.00 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=34.8
Q ss_pred ECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccC
Q 016774 159 IDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRG 226 (383)
Q Consensus 159 ~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~ 226 (383)
+.+++|+..+.. ..+.+||.++. .-...+ .+..+...-.++.++ ++||++....
T Consensus 74 l~gskIv~~d~~-------~~t~vyDt~t~----av~~~P--~l~~pk~~pisv~VG-~~LY~m~~~~ 127 (342)
T PF07893_consen 74 LHGSKIVAVDQS-------GRTLVYDTDTR----AVATGP--RLHSPKRCPISVSVG-DKLYAMDRSP 127 (342)
T ss_pred ecCCeEEEEcCC-------CCeEEEECCCC----eEeccC--CCCCCCcceEEEEeC-CeEEEeeccC
Confidence 344488887553 33899999987 444444 344444455667775 7799998763
No 62
>PRK13684 Ycf48-like protein; Provisional
Probab=89.02 E-value=19 Score=33.40 Aligned_cols=161 Identities=10% Similarity=0.065 Sum_probs=79.5
Q ss_pred cccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeee-ecccccCCcccccEEEccCCCCCCCcccccee
Q 016774 78 GMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIG-QIACHENLGITLSWRLLDVGSIAPPARGAHAA 156 (383)
Q Consensus 78 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~-d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~ 156 (383)
...+|+++.... .-..+.+....+..++..|... .++.- |- ...+|+.+.. +..+.-+++
T Consensus 160 gG~tW~~~~~~~--~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~-------gg~tW~~~~~----~~~~~l~~i 220 (334)
T PRK13684 160 GGKNWEALVEDA--AGVVRNLRRSPDGKYVAVSSRG------NFYSTWEP-------GQTAWTPHQR----NSSRRLQSM 220 (334)
T ss_pred CCCCceeCcCCC--cceEEEEEECCCCeEEEEeCCc------eEEEEcCC-------CCCeEEEeeC----CCcccceee
Confidence 445999886322 2234455555555445444322 13322 22 2467988743 334445555
Q ss_pred EEECCcEEEEEcccCCCCCcccceEEE-eccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccE
Q 016774 157 CCIDNRKMVIHAGIGLYGLRLGDTWVL-ELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDV 235 (383)
Q Consensus 157 ~~~~~~~i~v~GG~~~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v 235 (383)
....++.+++.|.. + ..++ +.+.. -.|+.+...........+++....++.+++.|... .+
T Consensus 221 ~~~~~g~~~~vg~~---G-----~~~~~s~d~G---~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G-------~v 282 (334)
T PRK13684 221 GFQPDGNLWMLARG---G-----QIRFNDPDDL---ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG-------TL 282 (334)
T ss_pred eEcCCCCEEEEecC---C-----EEEEccCCCC---CccccccCCccccccceeeEEEcCCCCEEEEcCCC-------eE
Confidence 55566678888643 2 1223 22322 38987642111111222334444456788887653 13
Q ss_pred EEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCc
Q 016774 236 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGE 284 (383)
Q Consensus 236 ~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~ 284 (383)
+.-.-.. .+|+.++ .....| .....++...+++.|+.|..
T Consensus 283 ~~S~d~G--~tW~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 283 LVSKDGG--KTWEKDP-----VGEEVP--SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred EEeCCCC--CCCeECC-----cCCCCC--cceEEEEEeCCCceEEECCC
Confidence 3322233 7899983 112222 22333443367788887754
No 63
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.87 E-value=18 Score=32.97 Aligned_cols=248 Identities=14% Similarity=0.138 Sum_probs=103.5
Q ss_pred cccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeE
Q 016774 19 ESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTC 98 (383)
Q Consensus 19 ~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~ 98 (383)
.-.+|......... +......++...++..+|.|-. -.++...+ ...+|++++-..+.+-..+.+
T Consensus 45 GG~tW~~~~~~~~~---~~~~~l~~I~f~~~~g~ivG~~---------g~ll~T~D---gG~tW~~v~l~~~lpgs~~~i 109 (302)
T PF14870_consen 45 GGKTWQPVSLDLDN---PFDYHLNSISFDGNEGWIVGEP---------GLLLHTTD---GGKTWERVPLSSKLPGSPFGI 109 (302)
T ss_dssp TTSS-EE-----S--------EEEEEEEETTEEEEEEET---------TEEEEESS---TTSS-EE----TT-SS-EEEE
T ss_pred CCccccccccCCCc---cceeeEEEEEecCCceEEEcCC---------ceEEEecC---CCCCcEEeecCCCCCCCeeEE
Confidence 34578887644322 2111122333457788887631 12333322 455999986333444444555
Q ss_pred EEE-CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcc
Q 016774 99 VVI-GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL 177 (383)
Q Consensus 99 ~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~ 177 (383)
..+ .+.+.++|.. + .+|+=.= .-.+|+.+.... .-.........++.+++.+-.
T Consensus 110 ~~l~~~~~~l~~~~---G----~iy~T~D-------gG~tW~~~~~~~----~gs~~~~~r~~dG~~vavs~~------- 164 (302)
T PF14870_consen 110 TALGDGSAELAGDR---G----AIYRTTD-------GGKTWQAVVSET----SGSINDITRSSDGRYVAVSSR------- 164 (302)
T ss_dssp EEEETTEEEEEETT---------EEEESS-------TTSSEEEEE-S--------EEEEEE-TTS-EEEEETT-------
T ss_pred EEcCCCcEEEEcCC---C----cEEEeCC-------CCCCeeEcccCC----cceeEeEEECCCCcEEEEECc-------
Confidence 554 4457777643 1 2443221 377899876421 111222333466666655532
Q ss_pred cceE-EEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccC
Q 016774 178 GDTW-VLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN 256 (383)
Q Consensus 178 ~~~~-~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~ 256 (383)
..++ ..|+-.. .|+... .+..|...++....++.++++. .+. .+.+=+...+..+|++-.
T Consensus 165 G~~~~s~~~G~~----~w~~~~---r~~~~riq~~gf~~~~~lw~~~-~Gg------~~~~s~~~~~~~~w~~~~----- 225 (302)
T PF14870_consen 165 GNFYSSWDPGQT----TWQPHN---RNSSRRIQSMGFSPDGNLWMLA-RGG------QIQFSDDPDDGETWSEPI----- 225 (302)
T ss_dssp SSEEEEE-TT-S----S-EEEE-----SSS-EEEEEE-TTS-EEEEE-TTT------EEEEEE-TTEEEEE---B-----
T ss_pred ccEEEEecCCCc----cceEEc---cCccceehhceecCCCCEEEEe-CCc------EEEEccCCCCcccccccc-----
Confidence 2233 4456555 798885 4455777777777777888765 321 133333112226787741
Q ss_pred CCCCCCCCceeeEEEEE-cCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCc
Q 016774 257 IPAGFSLPRVGHSATLI-LGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR 335 (383)
Q Consensus 257 ~~~~~p~~r~~~~~~~~-~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r 335 (383)
...+...++.--+.. .++.+++.||... ..+..+. -.+|++.......|..-
T Consensus 226 --~~~~~~~~~~ld~a~~~~~~~wa~gg~G~--------l~~S~Dg-----------------GktW~~~~~~~~~~~n~ 278 (302)
T PF14870_consen 226 --IPIKTNGYGILDLAYRPPNEIWAVGGSGT--------LLVSTDG-----------------GKTWQKDRVGENVPSNL 278 (302)
T ss_dssp ---TTSS--S-EEEEEESSSS-EEEEESTT---------EEEESST-----------------TSS-EE-GGGTTSSS--
T ss_pred --CCcccCceeeEEEEecCCCCEEEEeCCcc--------EEEeCCC-----------------CccceECccccCCCCce
Confidence 112222333222222 5678999888742 1222221 56899887643444433
Q ss_pred cceeeeecCCCcEEEEEcCc
Q 016774 336 SFHRACPDYSGRYLYVFGGM 355 (383)
Q Consensus 336 ~~~~~~~~~~~~~l~v~GG~ 355 (383)
+ ..+.+ ..++-+|+|-.
T Consensus 279 ~--~i~f~-~~~~gf~lG~~ 295 (302)
T PF14870_consen 279 Y--RIVFV-NPDKGFVLGQD 295 (302)
T ss_dssp ---EEEEE-ETTEEEEE-ST
T ss_pred E--EEEEc-CCCceEEECCC
Confidence 2 33333 45788998854
No 64
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=88.80 E-value=22 Score=33.83 Aligned_cols=106 Identities=9% Similarity=0.074 Sum_probs=59.2
Q ss_pred CcE-EEEEcccCCCCCcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEE
Q 016774 161 NRK-MVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL 238 (383)
Q Consensus 161 ~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~ 238 (383)
++. .++++|. ..-+|.||+.+. +-+++. ....+..-.....+.. ++.++++-|... .|+.+
T Consensus 268 ~G~~~i~~s~r------rky~ysyDle~a----k~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G------~I~lL 330 (514)
T KOG2055|consen 268 NGHSVIFTSGR------RKYLYSYDLETA----KVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNG------HIHLL 330 (514)
T ss_pred CCceEEEeccc------ceEEEEeecccc----ccccccCCCCcccchhheeEecC-CCCeEEEcccCc------eEEee
Confidence 434 6777774 234899999998 777776 2222321111223334 455677766632 47788
Q ss_pred EcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774 239 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 301 (383)
Q Consensus 239 ~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~ 301 (383)
...+ ..|..- -..+-.....+ .......|++.||.. +||++|+..
T Consensus 331 hakT--~eli~s--------~KieG~v~~~~-fsSdsk~l~~~~~~G-------eV~v~nl~~ 375 (514)
T KOG2055|consen 331 HAKT--KELITS--------FKIEGVVSDFT-FSSDSKELLASGGTG-------EVYVWNLRQ 375 (514)
T ss_pred hhhh--hhhhhe--------eeeccEEeeEE-EecCCcEEEEEcCCc-------eEEEEecCC
Confidence 7777 666321 11122222222 222445677777763 599999984
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.56 E-value=29 Score=32.64 Aligned_cols=158 Identities=14% Similarity=0.087 Sum_probs=82.4
Q ss_pred ceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCcccee
Q 016774 43 SLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTW 122 (383)
Q Consensus 43 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 122 (383)
+.+..++++|+.+.. ..++.++..+ ....|+.-... +...+.++.++.+|+.+. + ..++
T Consensus 60 ~p~v~~~~v~v~~~~-------g~v~a~d~~t---G~~~W~~~~~~----~~~~~p~v~~~~v~v~~~-~------g~l~ 118 (377)
T TIGR03300 60 QPAVAGGKVYAADAD-------GTVVALDAET---GKRLWRVDLDE----RLSGGVGADGGLVFVGTE-K------GEVI 118 (377)
T ss_pred ceEEECCEEEEECCC-------CeEEEEEccC---CcEeeeecCCC----CcccceEEcCCEEEEEcC-C------CEEE
Confidence 445567787776541 3577787644 33478754221 122234455667776443 1 2588
Q ss_pred eeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCC
Q 016774 123 IGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPS 202 (383)
Q Consensus 123 ~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~ 202 (383)
.+|.. +-+..|+.... ... ....+. .++.+|+..+ ...++.+|++++ +..|+.....+.
T Consensus 119 ald~~-----tG~~~W~~~~~-----~~~-~~~p~v-~~~~v~v~~~-------~g~l~a~d~~tG--~~~W~~~~~~~~ 177 (377)
T TIGR03300 119 ALDAE-----DGKELWRAKLS-----SEV-LSPPLV-ANGLVVVRTN-------DGRLTALDAATG--ERLWTYSRVTPA 177 (377)
T ss_pred EEECC-----CCcEeeeeccC-----cee-ecCCEE-ECCEEEEECC-------CCeEEEEEcCCC--ceeeEEccCCCc
Confidence 89872 13456875422 111 122223 3447776432 245899998875 356875541111
Q ss_pred CCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774 203 PPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 250 (383)
Q Consensus 203 p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i 250 (383)
...+...+.+.. ++.+ ++|... ..++.+|++++...|+.-
T Consensus 178 ~~~~~~~sp~~~-~~~v-~~~~~~------g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 178 LTLRGSASPVIA-DGGV-LVGFAG------GKLVALDLQTGQPLWEQR 217 (377)
T ss_pred eeecCCCCCEEE-CCEE-EEECCC------CEEEEEEccCCCEeeeec
Confidence 111222333444 3544 444432 158899998755678653
No 66
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=82.76 E-value=20 Score=27.82 Aligned_cols=80 Identities=10% Similarity=0.093 Sum_probs=48.0
Q ss_pred EEEEEcccCCCCCcccceEEEeccCCcccCceEEcccC-CCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEE-c
Q 016774 163 KMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTH-PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD-V 240 (383)
Q Consensus 163 ~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~-~ 240 (383)
.+|-..-. .......+..||+.+. +|..++.. ...........+.+ +++|-++.-........-++|+++ .
T Consensus 7 vly~~a~~--~~~~~~~IvsFDv~~E----~f~~i~~P~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 7 VLYWLAWS--EDSDNNVIVSFDVRSE----KFRFIKLPEDPYSSDCSSTLIEY-KGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEEeEEEE--CCCCCcEEEEEEcCCc----eEEEEEeeeeeccccCccEEEEe-CCeEEEEEecCCCCcceEEEEEeecc
Confidence 55555443 2234567999999999 99888721 12234445556666 477666544422212234789986 3
Q ss_pred ccCccceEEec
Q 016774 241 YEGFFKWVQIP 251 (383)
Q Consensus 241 ~~~~~~W~~i~ 251 (383)
.. ..|++..
T Consensus 80 ~k--~~Wsk~~ 88 (129)
T PF08268_consen 80 EK--QEWSKKH 88 (129)
T ss_pred cc--ceEEEEE
Confidence 34 7899874
No 67
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.66 E-value=54 Score=32.63 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=43.0
Q ss_pred eEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCC-CCCC-----CCCceEEEEcCCEEEEEcccCCCC
Q 016774 156 ACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP-SPPA-----RSGHSLTRIGGNRTVLFGGRGVGY 229 (383)
Q Consensus 156 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~-~p~~-----r~~~~~~~~~~~~i~v~GG~~~~~ 229 (383)
.++.+ +.||+... ...++.+|.+++ +..|+.-...+ ...+ ......++. ++++|+....
T Consensus 65 Pvv~~-g~vyv~s~-------~g~v~AlDa~TG--k~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~d---- 129 (527)
T TIGR03075 65 PLVVD-GVMYVTTS-------YSRVYALDAKTG--KELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLD---- 129 (527)
T ss_pred CEEEC-CEEEEECC-------CCcEEEEECCCC--ceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCC----
Confidence 33444 48888543 235899998876 45787654111 0000 011112333 4666653221
Q ss_pred CccccEEEEEcccCccceEEe
Q 016774 230 EVLNDVWFLDVYEGFFKWVQI 250 (383)
Q Consensus 230 ~~~~~v~~~~~~~~~~~W~~i 250 (383)
..++.+|.+++...|+.-
T Consensus 130 ---g~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 130 ---ARLVALDAKTGKVVWSKK 147 (527)
T ss_pred ---CEEEEEECCCCCEEeecc
Confidence 259999999877889764
No 68
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=82.53 E-value=31 Score=29.68 Aligned_cols=153 Identities=16% Similarity=0.229 Sum_probs=82.0
Q ss_pred EEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcc
Q 016774 98 CVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL 177 (383)
Q Consensus 98 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~ 177 (383)
.+..++++|+..+ ...++++|.. +-+..|+.-.. .+ .....+ ..++.+|+...-
T Consensus 32 ~~~~~~~v~~~~~-------~~~l~~~d~~-----tG~~~W~~~~~-----~~-~~~~~~-~~~~~v~v~~~~------- 85 (238)
T PF13360_consen 32 AVPDGGRVYVASG-------DGNLYALDAK-----TGKVLWRFDLP-----GP-ISGAPV-VDGGRVYVGTSD------- 85 (238)
T ss_dssp EEEETTEEEEEET-------TSEEEEEETT-----TSEEEEEEECS-----SC-GGSGEE-EETTEEEEEETT-------
T ss_pred EEEeCCEEEEEcC-------CCEEEEEECC-----CCCEEEEeecc-----cc-ccceee-ecccccccccce-------
Confidence 3447888888842 2358999972 13567876432 11 111233 344478776521
Q ss_pred cceEEEeccCCcccCceEE-cccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccC
Q 016774 178 GDTWVLELSENFCFGSWQQ-LVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN 256 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~-~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~ 256 (383)
+.++.+|..++ +..|+. ... ..+..........+.++.+++.... ..++.+|+.++...|+.-.
T Consensus 86 ~~l~~~d~~tG--~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------g~l~~~d~~tG~~~w~~~~----- 150 (238)
T PF13360_consen 86 GSLYALDAKTG--KVLWSIYLTS-SPPAGVRSSSSPAVDGDRLYVGTSS-------GKLVALDPKTGKLLWKYPV----- 150 (238)
T ss_dssp SEEEEEETTTS--CEEEEEEE-S-SCTCSTB--SEEEEETTEEEEEETC-------SEEEEEETTTTEEEEEEES-----
T ss_pred eeeEecccCCc--ceeeeecccc-ccccccccccCceEecCEEEEEecc-------CcEEEEecCCCcEEEEeec-----
Confidence 26999997776 568984 432 1121222222333334666555432 2589999998667787752
Q ss_pred CCCCCCCC-------ceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774 257 IPAGFSLP-------RVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 301 (383)
Q Consensus 257 ~~~~~p~~-------r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~ 301 (383)
...+.. ... +..++.++.+|+..+... +..+|+++
T Consensus 151 --~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~g~-------~~~~d~~t 192 (238)
T PF13360_consen 151 --GEPRGSSPISSFSDIN-GSPVISDGRVYVSSGDGR-------VVAVDLAT 192 (238)
T ss_dssp --STT-SS--EEEETTEE-EEEECCTTEEEEECCTSS-------EEEEETTT
T ss_pred --CCCCCCcceeeecccc-cceEEECCEEEEEcCCCe-------EEEEECCC
Confidence 111110 111 223335677777765532 56678874
No 69
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=81.99 E-value=23 Score=31.49 Aligned_cols=160 Identities=13% Similarity=0.195 Sum_probs=79.8
Q ss_pred EEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCce-EEEEcCCEEEEEcccCCCCCccccE
Q 016774 157 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHS-LTRIGGNRTVLFGGRGVGYEVLNDV 235 (383)
Q Consensus 157 ~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~-~~~~~~~~i~v~GG~~~~~~~~~~v 235 (383)
+...++.+++. ..............++-+.+ .+|+...... ........ .+...++.|+++--.. ... .+
T Consensus 114 i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G---~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~ 184 (275)
T PF13088_consen 114 IQLPDGRLIAP-YYHESGGSFSAFVYYSDDGG---KTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GND---DI 184 (275)
T ss_dssp EEECTTEEEEE-EEEESSCEEEEEEEEESSTT---SSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SST---EE
T ss_pred eEecCCCEEEE-EeeccccCcceEEEEeCCCC---ceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CCC---cE
Confidence 34456677776 22111222444556666655 4898887211 21123333 3344667888775442 111 44
Q ss_pred EEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEE-EEcCCCcccccccccccc
Q 016774 236 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWV-LDTKAIPFTSVQQSMLDS 314 (383)
Q Consensus 236 ~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~ 314 (383)
+.........+|+... ...+|.+.....++...++.++++...... ...+.+ +....
T Consensus 185 ~~~~S~D~G~TWs~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---r~~l~l~~S~D~------------- 242 (275)
T PF13088_consen 185 YISRSTDGGRTWSPPQ------PTNLPNPNSSISLVRLSDGRLLLVYNNPDG---RSNLSLYVSEDG------------- 242 (275)
T ss_dssp EEEEESSTTSS-EEEE------EEECSSCCEEEEEEECTTSEEEEEEECSST---SEEEEEEEECTT-------------
T ss_pred EEEEECCCCCcCCCce------ecccCcccCCceEEEcCCCCEEEEEECCCC---CCceEEEEEeCC-------------
Confidence 4444443347899863 234566666555555467788877773211 112222 22221
Q ss_pred cccccccceeeccCCCCCCCccceeeeecCCCcEEEE
Q 016774 315 RGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYV 351 (383)
Q Consensus 315 ~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v 351 (383)
..+|.........+...+++...+...+++|+|
T Consensus 243 ----g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 243 ----GKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ----CEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred ----CCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 568887654322333445555555544567775
No 70
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=81.94 E-value=55 Score=32.20 Aligned_cols=134 Identities=15% Similarity=0.099 Sum_probs=68.3
Q ss_pred cceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCC-CCCCcc-ccceeEEECCcEEEEEcccC
Q 016774 94 FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGS-IAPPAR-GAHAACCIDNRKMVIHAGIG 171 (383)
Q Consensus 94 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~-~~p~~r-~~~~~~~~~~~~i~v~GG~~ 171 (383)
...+-++.++++|+.... ..++.+|.. +-+..|+.-.... ....+. .....+..+++++|+...
T Consensus 53 ~~~sPvv~~g~vy~~~~~-------g~l~AlD~~-----tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-- 118 (488)
T cd00216 53 QEGTPLVVDGDMYFTTSH-------SALFALDAA-----TGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-- 118 (488)
T ss_pred cccCCEEECCEEEEeCCC-------CcEEEEECC-----CChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--
Confidence 334456778888886542 257888872 1256687643221 001111 111122223247776432
Q ss_pred CCCCcccceEEEeccCCcccCceEEcccCCC-CCCCCCceEEEEcCCEEEEEcccCCCC---CccccEEEEEcccCccce
Q 016774 172 LYGLRLGDTWVLELSENFCFGSWQQLVTHPS-PPARSGHSLTRIGGNRTVLFGGRGVGY---EVLNDVWFLDVYEGFFKW 247 (383)
Q Consensus 172 ~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~~~~~~~~~~W 247 (383)
...++.+|.++. +..|+.-..... +......+.++. ++.+| +|...... .....++.||.+++...|
T Consensus 119 -----~g~v~AlD~~TG--~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 119 -----DGRLVALDAETG--KQVWKFGNNDQVPPGYTMTGAPTIV-KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred -----CCeEEEEECCCC--CEeeeecCCCCcCcceEecCCCEEE-CCEEE-EeccccccccCCCCcEEEEEECCCCceee
Confidence 246899998876 457876541111 111112233344 35544 44332111 123469999999877889
Q ss_pred EEe
Q 016774 248 VQI 250 (383)
Q Consensus 248 ~~i 250 (383)
+.-
T Consensus 190 ~~~ 192 (488)
T cd00216 190 RFY 192 (488)
T ss_pred Eee
Confidence 764
No 71
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=80.09 E-value=38 Score=29.12 Aligned_cols=192 Identities=17% Similarity=0.187 Sum_probs=102.5
Q ss_pred eeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeee
Q 016774 45 NFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIG 124 (383)
Q Consensus 45 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 124 (383)
+..++++|+..+ ...++.++..+ ....|+.-.. .+........++.+|+.... +.++.+
T Consensus 33 ~~~~~~v~~~~~-------~~~l~~~d~~t---G~~~W~~~~~----~~~~~~~~~~~~~v~v~~~~-------~~l~~~ 91 (238)
T PF13360_consen 33 VPDGGRVYVASG-------DGNLYALDAKT---GKVLWRFDLP----GPISGAPVVDGGRVYVGTSD-------GSLYAL 91 (238)
T ss_dssp EEETTEEEEEET-------TSEEEEEETTT---SEEEEEEECS----SCGGSGEEEETTEEEEEETT-------SEEEEE
T ss_pred EEeCCEEEEEcC-------CCEEEEEECCC---CCEEEEeecc----ccccceeeecccccccccce-------eeeEec
Confidence 336778888742 35778888744 3347876431 22222257778888887621 158888
Q ss_pred ecccccCCcccccEE-EccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCC
Q 016774 125 QIACHENLGITLSWR-LLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSP 203 (383)
Q Consensus 125 d~~~~~~~~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p 203 (383)
|.. +-+..|+ ...... +.+........+.++.+|+... ...++.+|++++ +..|+... ..+
T Consensus 92 d~~-----tG~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG--~~~w~~~~--~~~ 153 (238)
T PF13360_consen 92 DAK-----TGKVLWSIYLTSSP--PAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTG--KLLWKYPV--GEP 153 (238)
T ss_dssp ETT-----TSCEEEEEEE-SSC--TCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTT--EEEEEEES--STT
T ss_pred ccC-----Ccceeeeecccccc--ccccccccCceEecCEEEEEec-------cCcEEEEecCCC--cEEEEeec--CCC
Confidence 862 2366788 443321 1222222222333436666542 356899999876 44566543 222
Q ss_pred CCCC-------CceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCC
Q 016774 204 PARS-------GHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGG 276 (383)
Q Consensus 204 ~~r~-------~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~ 276 (383)
.... ..+...+.++.+|+..+.. .+..+|+.++...|+.. +.. ........++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~~~w~~~-----------~~~--~~~~~~~~~~ 213 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGEKLWSKP-----------ISG--IYSLPSVDGG 213 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTEEEEEEC-----------SS---ECECEECCCT
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCCCEEEEec-----------CCC--ccCCceeeCC
Confidence 1111 0122333356788777653 16667988843348432 111 1111223667
Q ss_pred EEEEEcCcCCCCCCCCcEEEEEcCCC
Q 016774 277 RVLIYGGEDSARRRKDDFWVLDTKAI 302 (383)
Q Consensus 277 ~l~i~GG~~~~~~~~~~~~~~d~~~~ 302 (383)
.||+.. .+ ..++.+|+++.
T Consensus 214 ~l~~~~-~~------~~l~~~d~~tG 232 (238)
T PF13360_consen 214 TLYVTS-SD------GRLYALDLKTG 232 (238)
T ss_dssp EEEEEE-TT------TEEEEEETTTT
T ss_pred EEEEEe-CC------CEEEEEECCCC
Confidence 777766 32 45899999864
No 72
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=78.70 E-value=47 Score=29.39 Aligned_cols=278 Identities=14% Similarity=0.126 Sum_probs=114.5
Q ss_pred eeeeCCEEEE--EccccCCCCCCCceEEEEeccCcccccceEEcC------CC-CCCCCcceeEEEECCEEEEEcC-ccC
Q 016774 44 LNFVSNCLVL--FGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVN------SG-IPSGRFGHTCVVIGDCLVLFGG-IND 113 (383)
Q Consensus 44 ~~~~~~~i~v--~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~------~~-~p~~r~~~~~~~~~~~iyv~GG-~~~ 113 (383)
+.++++-||. ++|..-+-..+.-.|+-..+ .+.+|+..+ .. +...-..++|.+++|++|..=- +.-
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgD----dG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~ 96 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGD----DGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTV 96 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESS----TTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEET
T ss_pred ceeecCeeecccccccccCccceEEEEEEecC----CCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhh
Confidence 4456666653 34433333333444544332 334777532 11 1223345677789999887643 222
Q ss_pred CCCCccceeeeecccccCCcccccEEEccCCCCCCC-------ccccceeEEECCcEEEEEcccCCC--CCcccceEEEe
Q 016774 114 RGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPP-------ARGAHAACCIDNRKMVIHAGIGLY--GLRLGDTWVLE 184 (383)
Q Consensus 114 ~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~-------~r~~~~~~~~~~~~i~v~GG~~~~--~~~~~~~~~~d 184 (383)
.+..+.....+|---. .+..|++-.... .|. ...-|+.+.+++ .-|.+|=.+.+ ...+.-++.-+
T Consensus 97 a~~km~~~~Lw~RpMF----~~spW~~teL~~-~~~~~~a~~~vTe~HSFa~i~~-~~fA~GyHnGD~sPRe~G~~yfs~ 170 (367)
T PF12217_consen 97 ASNKMVRAELWSRPMF----HDSPWRITELGT-IASFTSAGVAVTELHSFATIDD-NQFAVGYHNGDVSPRELGFLYFSD 170 (367)
T ss_dssp TT--EEEEEEEEEE-S----TTS--EEEEEES--TT--------SEEEEEEE-SS-S-EEEEEEE-SSSS-EEEEEEETT
T ss_pred hhhhhhhhhhhccccc----ccCCceeeeccc-ccccccccceeeeeeeeeEecC-CceeEEeccCCCCcceeeEEEecc
Confidence 2222322333332111 467887654322 222 334567777777 44565532211 11222222211
Q ss_pred ccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCC
Q 016774 185 LSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLP 264 (383)
Q Consensus 185 ~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~ 264 (383)
.-..+..+.=.+++. .....-+-.|+-.+ ++.||+.--...+...-+.+.+-+... ..|+.+.+ |.
T Consensus 171 ~~~sp~~~vrr~i~s-ey~~~AsEPCvkyY-~g~LyLtTRgt~~~~~GS~L~rs~d~G--~~w~slrf---------p~- 236 (367)
T PF12217_consen 171 AFASPGVFVRRIIPS-EYERNASEPCVKYY-DGVLYLTTRGTLPTNPGSSLHRSDDNG--QNWSSLRF---------PN- 236 (367)
T ss_dssp TTT-TT--EEEE--G-GG-TTEEEEEEEEE-TTEEEEEEEES-TTS---EEEEESSTT--SS-EEEE----------TT-
T ss_pred cccCCcceeeeechh-hhccccccchhhhh-CCEEEEEEcCcCCCCCcceeeeecccC--Cchhhccc---------cc-
Confidence 111111112222321 12222223344455 699998864434555666788888878 89999852 21
Q ss_pred ceeeEEE--EEcCCEEEEEcCcCCCC------------CCCCcEEEEEcCCCcccccccccccccccccccceeeccC--
Q 016774 265 RVGHSAT--LILGGRVLIYGGEDSAR------------RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE-- 328 (383)
Q Consensus 265 r~~~~~~--~~~~~~l~i~GG~~~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-- 328 (383)
...|+-. ..+++.||+||-....+ ......+..... |..+.+.+-.|..+..+
T Consensus 237 nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~n-----------v~~W~~d~~ew~nitdqIY 305 (367)
T PF12217_consen 237 NVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVN-----------VSDWSLDDVEWVNITDQIY 305 (367)
T ss_dssp ---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEE-----------TTT---TT---EEEEE-BB
T ss_pred cccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEee-----------cccCCccceEEEEeeccee
Confidence 1222222 23899999999653211 112233333332 33445567778877643
Q ss_pred -CCCCCCccceeeeecCCCcEEEEEcCcc
Q 016774 329 -GYKPNCRSFHRACPDYSGRYLYVFGGMV 356 (383)
Q Consensus 329 -~~~p~~r~~~~~~~~~~~~~l~v~GG~~ 356 (383)
|.....-.+-+++.+.++=-.|+|||..
T Consensus 306 qG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 306 QGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp --SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccccccccccceeEEEECCEEEEEecCcc
Confidence 4455555666776666665678999984
No 73
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=77.06 E-value=65 Score=30.20 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=95.4
Q ss_pred eeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeee
Q 016774 45 NFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIG 124 (383)
Q Consensus 45 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 124 (383)
+..++.+|+.+. ...++.++..+ ....|+.-... . ...+.+..++++|+..+. ..++.+
T Consensus 102 ~v~~~~v~v~~~-------~g~l~ald~~t---G~~~W~~~~~~---~-~~~~p~v~~~~v~v~~~~-------g~l~a~ 160 (377)
T TIGR03300 102 GADGGLVFVGTE-------KGEVIALDAED---GKELWRAKLSS---E-VLSPPLVANGLVVVRTND-------GRLTAL 160 (377)
T ss_pred EEcCCEEEEEcC-------CCEEEEEECCC---CcEeeeeccCc---e-eecCCEEECCEEEEECCC-------CeEEEE
Confidence 344667665432 23677777643 33478754321 1 123334456777775431 248888
Q ss_pred ecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCC
Q 016774 125 QIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPP 204 (383)
Q Consensus 125 d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~ 204 (383)
|.. ..+..|+...... ....+...+.+..++ .+| +|.. ...++.+|+.++ +..|+.-. ..+.
T Consensus 161 d~~-----tG~~~W~~~~~~~-~~~~~~~~sp~~~~~-~v~-~~~~------~g~v~ald~~tG--~~~W~~~~--~~~~ 222 (377)
T TIGR03300 161 DAA-----TGERLWTYSRVTP-ALTLRGSASPVIADG-GVL-VGFA------GGKLVALDLQTG--QPLWEQRV--ALPK 222 (377)
T ss_pred EcC-----CCceeeEEccCCC-ceeecCCCCCEEECC-EEE-EECC------CCEEEEEEccCC--CEeeeecc--ccCC
Confidence 882 1245687543211 001122223333343 554 3332 135889998775 34676432 1111
Q ss_pred CC--------CCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCC
Q 016774 205 AR--------SGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGG 276 (383)
Q Consensus 205 ~r--------~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~ 276 (383)
.. ...+.+.. ++.+|+.... ..++.||++++...|+.-. .. ..+.+ ..++
T Consensus 223 g~~~~~~~~~~~~~p~~~-~~~vy~~~~~-------g~l~a~d~~tG~~~W~~~~-------~~------~~~p~-~~~~ 280 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVD-GGQVYAVSYQ-------GRVAALDLRSGRVLWKRDA-------SS------YQGPA-VDDN 280 (377)
T ss_pred CCCchhhhhccCCccEEE-CCEEEEEEcC-------CEEEEEECCCCcEEEeecc-------CC------ccCce-EeCC
Confidence 11 11222333 5777765432 2489999988666786531 11 11222 3678
Q ss_pred EEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774 277 RVLIYGGEDSARRRKDDFWVLDTKA 301 (383)
Q Consensus 277 ~l~i~GG~~~~~~~~~~~~~~d~~~ 301 (383)
++|+... ...++.+|..+
T Consensus 281 ~vyv~~~-------~G~l~~~d~~t 298 (377)
T TIGR03300 281 RLYVTDA-------DGVVVALDRRS 298 (377)
T ss_pred EEEEECC-------CCeEEEEECCC
Confidence 8887642 23588888864
No 74
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=75.78 E-value=85 Score=30.88 Aligned_cols=184 Identities=13% Similarity=0.064 Sum_probs=88.1
Q ss_pred ccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCC---CC-CCcceeEEEEC-CEEEEEcCccCCC
Q 016774 41 SHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGI---PS-GRFGHTCVVIG-DCLVLFGGINDRG 115 (383)
Q Consensus 41 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~---p~-~r~~~~~~~~~-~~iyv~GG~~~~~ 115 (383)
..+-++.++++|+.... ..++.++..+ ....|+.-.... .. +-.....+..+ ++||+...
T Consensus 54 ~~sPvv~~g~vy~~~~~-------g~l~AlD~~t---G~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~----- 118 (488)
T cd00216 54 EGTPLVVDGDMYFTTSH-------SALFALDAAT---GKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF----- 118 (488)
T ss_pred ccCCEEECCEEEEeCCC-------CcEEEEECCC---ChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-----
Confidence 34455678888886541 4667777643 334787532111 00 11112234445 77776432
Q ss_pred CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC---CcccceEEEeccCCcccC
Q 016774 116 NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG---LRLGDTWVLELSENFCFG 192 (383)
Q Consensus 116 ~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~~~~d~~~~~~~~ 192 (383)
...++.+|.. +-+..|+.-......+......+.++.+ +.+|+ |..+... .....++.+|..|+ +.
T Consensus 119 --~g~v~AlD~~-----TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~~v~v-g~~~~~~~~~~~~g~v~alD~~TG--~~ 187 (488)
T cd00216 119 --DGRLVALDAE-----TGKQVWKFGNNDQVPPGYTMTGAPTIVK-KLVII-GSSGAEFFACGVRGALRAYDVETG--KL 187 (488)
T ss_pred --CCeEEEEECC-----CCCEeeeecCCCCcCcceEecCCCEEEC-CEEEE-eccccccccCCCCcEEEEEECCCC--ce
Confidence 1258888872 2356788643211000101122333333 35554 3221110 12457899999886 45
Q ss_pred ceEEcccCCCC--CC--------------CCCceEEEE-cCCEEEEEcccCC-----------CCCccccEEEEEcccCc
Q 016774 193 SWQQLVTHPSP--PA--------------RSGHSLTRI-GGNRTVLFGGRGV-----------GYEVLNDVWFLDVYEGF 244 (383)
Q Consensus 193 ~W~~~~~~~~p--~~--------------r~~~~~~~~-~~~~i~v~GG~~~-----------~~~~~~~v~~~~~~~~~ 244 (383)
.|+.-...+.+ .+ ....+.++. .++.+|+-.+... .....+.++.+|++++.
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 67654311111 00 011122222 2244554433210 11234479999999977
Q ss_pred cceEEe
Q 016774 245 FKWVQI 250 (383)
Q Consensus 245 ~~W~~i 250 (383)
..|+.-
T Consensus 268 ~~W~~~ 273 (488)
T cd00216 268 VKWFYQ 273 (488)
T ss_pred EEEEee
Confidence 889864
No 75
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=75.55 E-value=36 Score=26.43 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=42.2
Q ss_pred CCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEE
Q 016774 216 GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFW 295 (383)
Q Consensus 216 ~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~ 295 (383)
++.+|-..-. .....+.|..||+.+ .+|+.++.+ ............+. .+++|-++.-........-++|
T Consensus 5 nGvly~~a~~--~~~~~~~IvsFDv~~--E~f~~i~~P-----~~~~~~~~~~~L~~-~~G~L~~v~~~~~~~~~~~~iW 74 (129)
T PF08268_consen 5 NGVLYWLAWS--EDSDNNVIVSFDVRS--EKFRFIKLP-----EDPYSSDCSSTLIE-YKGKLALVSYNDQGEPDSIDIW 74 (129)
T ss_pred CcEEEeEEEE--CCCCCcEEEEEEcCC--ceEEEEEee-----eeeccccCccEEEE-eCCeEEEEEecCCCCcceEEEE
Confidence 4566555443 223345699999999 999999511 11122223333333 7788777655443222345789
Q ss_pred EEE
Q 016774 296 VLD 298 (383)
Q Consensus 296 ~~d 298 (383)
+++
T Consensus 75 vLe 77 (129)
T PF08268_consen 75 VLE 77 (129)
T ss_pred Eee
Confidence 997
No 76
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=74.69 E-value=77 Score=30.24 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=47.9
Q ss_pred cceeeeCCEEEEE---ccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCc
Q 016774 42 HSLNFVSNCLVLF---GGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRH 118 (383)
Q Consensus 42 ~~~~~~~~~i~v~---GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 118 (383)
+++..+++.+=+. |-+....+..+++|.+|.+-+ ---++.+..|-.|. +++-.++|.+|++-=+. .
T Consensus 380 f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~ln-----vvGkltGl~~gERI-YAvRf~gdv~yiVTfrq-----t 448 (603)
T COG4880 380 FDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLN-----VVGKLTGLAPGERI-YAVRFVGDVLYIVTFRQ-----T 448 (603)
T ss_pred ccCcccceEEEEEeeecccccCCCccceeEEEcCCCc-----EEEEEeccCCCceE-EEEEEeCceEEEEEEec-----c
Confidence 3444445533333 333455677899999987544 33355554566676 35556788899885432 4
Q ss_pred cceeeeeccccc
Q 016774 119 NDTWIGQIACHE 130 (383)
Q Consensus 119 ~~~~~~d~~~~~ 130 (383)
+.+++.|+++++
T Consensus 449 DPlfviDlsNPe 460 (603)
T COG4880 449 DPLFVIDLSNPE 460 (603)
T ss_pred CceEEEEcCCCC
Confidence 568899997554
No 77
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=74.57 E-value=61 Score=28.69 Aligned_cols=131 Identities=12% Similarity=0.073 Sum_probs=65.2
Q ss_pred ccccEEEccCCCCCCCccccceeE-EECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEE
Q 016774 134 ITLSWRLLDVGSIAPPARGAHAAC-CIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLT 212 (383)
Q Consensus 134 ~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~ 212 (383)
.-.+|+...... +.....+.+. ...++.++++--.. ... .-.+....+.+ .+|+.......|.+.....++
T Consensus 143 ~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G---~TWs~~~~~~~~~~~~~~~~~ 214 (275)
T PF13088_consen 143 GGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGG---RTWSPPQPTNLPNPNSSISLV 214 (275)
T ss_dssp TTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTT---SS-EEEEEEECSSCCEEEEEE
T ss_pred CCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCC---CcCCCceecccCcccCCceEE
Confidence 366798876521 2223333333 34667888875432 111 33444444433 589987633556666666666
Q ss_pred EEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeE-EEEEcCCEEEE
Q 016774 213 RIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS-ATLILGGRVLI 280 (383)
Q Consensus 213 ~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~-~~~~~~~~l~i 280 (383)
...++.++++...... . ..+.++-...+..+|+... .....+...++.. ++...+++|+|
T Consensus 215 ~~~~g~~~~~~~~~~~-r--~~l~l~~S~D~g~tW~~~~-----~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 215 RLSDGRLLLVYNNPDG-R--SNLSLYVSEDGGKTWSRPK-----TIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ECTTSEEEEEEECSST-S--EEEEEEEECTTCEEEEEEE-----EEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EcCCCCEEEEEECCCC-C--CceEEEEEeCCCCcCCccE-----EEeCCCCCcEECCeeEEeCCCcCCC
Confidence 6667788888773211 1 1222222222238898763 1112222234433 33335678876
No 78
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=74.22 E-value=71 Score=29.25 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=9.9
Q ss_pred eeeecCCCcEEEEEcC
Q 016774 339 RACPDYSGRYLYVFGG 354 (383)
Q Consensus 339 ~~~~~~~~~~l~v~GG 354 (383)
.+++..++..+|+.-.
T Consensus 179 ~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 179 HMVFHPNQQYAYCVNE 194 (330)
T ss_pred eEEECCCCCEEEEEec
Confidence 3445566777777754
No 79
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=73.89 E-value=81 Score=31.43 Aligned_cols=132 Identities=9% Similarity=0.038 Sum_probs=67.8
Q ss_pred eeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCC--CCC---CccccceeEEECCcEEEEEccc
Q 016774 96 HTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGS--IAP---PARGAHAACCIDNRKMVIHAGI 170 (383)
Q Consensus 96 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~--~~p---~~r~~~~~~~~~~~~i~v~GG~ 170 (383)
.+-++.++.||+.... +.++.+|.. +-+..|+.-.... ..+ ........ .+.++++|+...
T Consensus 63 stPvv~~g~vyv~s~~-------g~v~AlDa~-----TGk~lW~~~~~~~~~~~~~~~~~~~~rg~-av~~~~v~v~t~- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------SRVYALDAK-----TGKELWKYDPKLPDDVIPVMCCDVVNRGV-ALYDGKVFFGTL- 128 (527)
T ss_pred cCCEEECCEEEEECCC-------CcEEEEECC-----CCceeeEecCCCCcccccccccccccccc-eEECCEEEEEcC-
Confidence 4455678889886542 248888872 2256787643211 001 00111122 333447776321
Q ss_pred CCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774 171 GLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 250 (383)
Q Consensus 171 ~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i 250 (383)
-..++.+|.+|+ +..|+.-............+-++. ++.+|+-.... .......|+.||.+++...|+.-
T Consensus 129 ------dg~l~ALDa~TG--k~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 ------DARLVALDAKTG--KVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ------CCEEEEEECCCC--CEEeecccccccccccccCCcEEE-CCEEEEeeccc-ccCCCcEEEEEECCCCceeEecc
Confidence 245899999876 556775431111001112223344 46665532221 11233469999999977789765
Q ss_pred c
Q 016774 251 P 251 (383)
Q Consensus 251 ~ 251 (383)
.
T Consensus 199 ~ 199 (527)
T TIGR03075 199 T 199 (527)
T ss_pred C
Confidence 4
No 80
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=72.80 E-value=68 Score=28.40 Aligned_cols=228 Identities=15% Similarity=0.128 Sum_probs=88.2
Q ss_pred cceeeeCCEEEEEcc-ccCCCCCCCceEEEEeccCcccccceEEcC-CCCCC-------CCcceeEEEECCEEEEEcCcc
Q 016774 42 HSLNFVSNCLVLFGG-GCEGGRHLDDTWVAYVGNDFQGMLKWQKVN-SGIPS-------GRFGHTCVVIGDCLVLFGGIN 112 (383)
Q Consensus 42 ~~~~~~~~~i~v~GG-~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~~p~-------~r~~~~~~~~~~~iyv~GG~~ 112 (383)
.++-+++|++|.+=- ..-....+....+++--.. ....|++.. +..|. ...-|+.|.+++.-|.+|=.+
T Consensus 78 mSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF--~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHn 155 (367)
T PF12217_consen 78 MSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMF--HDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHN 155 (367)
T ss_dssp B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-S--TTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE
T ss_pred eeeeeecceeeEEEeehhhhhhhhhhhhhhccccc--ccCCceeeecccccccccccceeeeeeeeeEecCCceeEEecc
Confidence 456678998887632 1222222233333332222 334776532 11222 446688999988877887544
Q ss_pred CCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccC
Q 016774 113 DRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFG 192 (383)
Q Consensus 113 ~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~ 192 (383)
+... -.++=.+-.+. ..+.....-.+..+.. . .+-+.--|+-..++.+|+.---......-+.+.+-+....
T Consensus 156 GD~s-PRe~G~~yfs~-~~~sp~~~vrr~i~se-y-~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~---- 227 (367)
T PF12217_consen 156 GDVS-PRELGFLYFSD-AFASPGVFVRRIIPSE-Y-ERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQ---- 227 (367)
T ss_dssp -SSS-S-EEEEEEETT-TTT-TT--EEEE--GG-G--TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTS----
T ss_pred CCCC-cceeeEEEecc-cccCCcceeeeechhh-h-ccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCC----
Confidence 3221 12222222211 1111222222221110 1 1111112223345588887432222233445666666555
Q ss_pred ceEEcccCCCCCCCCCce---EEEEcCCEEEEEcccCC---------CCCc---cccEE--EEEccc---CccceEEecc
Q 016774 193 SWQQLVTHPSPPARSGHS---LTRIGGNRTVLFGGRGV---------GYEV---LNDVW--FLDVYE---GFFKWVQIPY 252 (383)
Q Consensus 193 ~W~~~~~~~~p~~r~~~~---~~~~~~~~i~v~GG~~~---------~~~~---~~~v~--~~~~~~---~~~~W~~i~~ 252 (383)
.|+.+. .|. ...|+ -+.+ ++.|||||-.-. ...+ ....+ +.++.. +...|..|.-
T Consensus 228 ~w~slr---fp~-nvHhtnlPFakv-gD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitd 302 (367)
T PF12217_consen 228 NWSSLR---FPN-NVHHTNLPFAKV-GDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITD 302 (367)
T ss_dssp S-EEEE----TT----SS---EEEE-TTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE
T ss_pred chhhcc---ccc-cccccCCCceee-CCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeec
Confidence 898886 221 11222 3455 599999996510 0001 11222 222221 1255666631
Q ss_pred cccCCCCCCCCCceeeEEEEEcCCEE-EEEcCcCC
Q 016774 253 ELQNIPAGFSLPRVGHSATLILGGRV-LIYGGEDS 286 (383)
Q Consensus 253 ~~~~~~~~~p~~r~~~~~~~~~~~~l-~i~GG~~~ 286 (383)
+--.+.....-.+.+++++.++-| |+|||.+-
T Consensus 303 --qIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 303 --QIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp ---BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred --ceeccccccccccceeEEEECCEEEEEecCccc
Confidence 111233333445566666677765 58999863
No 81
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=68.13 E-value=97 Score=28.31 Aligned_cols=246 Identities=14% Similarity=0.140 Sum_probs=103.8
Q ss_pred cccceeeeecCCCCCCCCCCCcccceee-eCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCC--Ccc
Q 016774 19 ESVSCRNISDADGDLVLPNPRASHSLNF-VSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSG--RFG 95 (383)
Q Consensus 19 ~~~~W~~~~~~~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~--r~~ 95 (383)
....|+.+....+ ..-..+.. ..++-|++|-. . .++...+ ...+|.......+.+ ...
T Consensus 4 ~~~~W~~v~l~t~-------~~l~dV~F~d~~~G~~VG~~-------g--~il~T~D---GG~tW~~~~~~~~~~~~~~l 64 (302)
T PF14870_consen 4 SGNSWQQVSLPTD-------KPLLDVAFVDPNHGWAVGAY-------G--TILKTTD---GGKTWQPVSLDLDNPFDYHL 64 (302)
T ss_dssp SS--EEEEE-S-S-------S-EEEEEESSSS-EEEEETT-------T--EEEEESS---TTSS-EE-----S-----EE
T ss_pred cCCCcEEeecCCC-------CceEEEEEecCCEEEEEecC-------C--EEEEECC---CCccccccccCCCccceeeE
Confidence 4567999875432 12233333 35688888742 1 2233322 445999875333322 223
Q ss_pred eeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCC
Q 016774 96 HTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGL 175 (383)
Q Consensus 96 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~ 175 (383)
.++...++..||+|-. + + ++-.. ..-.+|+++......| -..+....++++.++++|..
T Consensus 65 ~~I~f~~~~g~ivG~~---g-----~-ll~T~-----DgG~tW~~v~l~~~lp--gs~~~i~~l~~~~~~l~~~~----- 123 (302)
T PF14870_consen 65 NSISFDGNEGWIVGEP---G-----L-LLHTT-----DGGKTWERVPLSSKLP--GSPFGITALGDGSAELAGDR----- 123 (302)
T ss_dssp EEEEEETTEEEEEEET---T-----E-EEEES-----STTSS-EE----TT-S--S-EEEEEEEETTEEEEEETT-----
T ss_pred EEEEecCCceEEEcCC---c-----e-EEEec-----CCCCCcEEeecCCCCC--CCeeEEEEcCCCcEEEEcCC-----
Confidence 3444457778888632 1 1 12220 1478999986432122 23344555666678877642
Q ss_pred cccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEE-EEEcccCccceEEecccc
Q 016774 176 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW-FLDVYEGFFKWVQIPYEL 254 (383)
Q Consensus 176 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~-~~~~~~~~~~W~~i~~~~ 254 (383)
..+|+-.=.-. +|+.+... . .-....+....++.+++++-.+ .++ ..+.-. ..|+...
T Consensus 124 --G~iy~T~DgG~----tW~~~~~~--~-~gs~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~--~~w~~~~--- 182 (302)
T PF14870_consen 124 --GAIYRTTDGGK----TWQAVVSE--T-SGSINDITRSSDGRYVAVSSRG-------NFYSSWDPGQ--TTWQPHN--- 182 (302)
T ss_dssp ----EEEESSTTS----SEEEEE-S-------EEEEEE-TTS-EEEEETTS-------SEEEEE-TT---SS-EEEE---
T ss_pred --CcEEEeCCCCC----CeeEcccC--C-cceeEeEEECCCCcEEEEECcc-------cEEEEecCCC--ccceEEc---
Confidence 33555433344 99988621 1 1222334455567777777554 233 345444 6798884
Q ss_pred cCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCC
Q 016774 255 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNC 334 (383)
Q Consensus 255 ~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~ 334 (383)
.+..|+-.++....++.|+++. .-+ .+..-+.... ...|.+... ..+..
T Consensus 183 ------r~~~~riq~~gf~~~~~lw~~~-~Gg------~~~~s~~~~~----------------~~~w~~~~~--~~~~~ 231 (302)
T PF14870_consen 183 ------RNSSRRIQSMGFSPDGNLWMLA-RGG------QIQFSDDPDD----------------GETWSEPII--PIKTN 231 (302)
T ss_dssp --------SSS-EEEEEE-TTS-EEEEE-TTT------EEEEEE-TTE----------------EEEE---B---TTSS-
T ss_pred ------cCccceehhceecCCCCEEEEe-CCc------EEEEccCCCC----------------ccccccccC--CcccC
Confidence 3344544445444677887765 211 1333331110 457876332 11233
Q ss_pred ccceeeeecCCCcEEEEEcCcc
Q 016774 335 RSFHRACPDYSGRYLYVFGGMV 356 (383)
Q Consensus 335 r~~~~~~~~~~~~~l~v~GG~~ 356 (383)
.+++-.......+.+++.||..
T Consensus 232 ~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 232 GYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -S-EEEEEESSSS-EEEEESTT
T ss_pred ceeeEEEEecCCCCEEEEeCCc
Confidence 3333333444568999999884
No 82
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=65.51 E-value=1.3e+02 Score=28.77 Aligned_cols=203 Identities=11% Similarity=0.084 Sum_probs=95.7
Q ss_pred ccceeeeecCCCCCCCCCCCcccceee---eCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCC----CCCC
Q 016774 20 SVSCRNISDADGDLVLPNPRASHSLNF---VSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSG----IPSG 92 (383)
Q Consensus 20 ~~~W~~~~~~~~~~~~p~~r~~~~~~~---~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~p~~ 92 (383)
-.+|+++..+-. + .+.-..+.. ..++.+++|-. -.++.... ...+|.+.... ....
T Consensus 74 G~~W~q~~~p~~----~-~~~L~~V~F~~~d~~~GwAVG~~---------G~IL~T~D---GG~tW~~~~~~~~~~~~~~ 136 (398)
T PLN00033 74 SSEWEQVDLPID----P-GVVLLDIAFVPDDPTHGFLLGTR---------QTLLETKD---GGKTWVPRSIPSAEDEDFN 136 (398)
T ss_pred CCccEEeecCCC----C-CCceEEEEeccCCCCEEEEEcCC---------CEEEEEcC---CCCCceECccCcccccccc
Confidence 347998864321 1 112233333 23478888752 12333322 44589875311 1111
Q ss_pred CcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCC
Q 016774 93 RFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGL 172 (383)
Q Consensus 93 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~ 172 (383)
....++...++..|++|-. + .+|-.. ..-.+|+++......|.. .+......++..++.|..
T Consensus 137 ~~l~~v~f~~~~g~~vG~~---G------~il~T~-----DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~-- 198 (398)
T PLN00033 137 YRFNSISFKGKEGWIIGKP---A------ILLHTS-----DGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE-- 198 (398)
T ss_pred cceeeeEEECCEEEEEcCc---e------EEEEEc-----CCCCCceECccccCCCCC--ceEEEEECCCceEEEecc--
Confidence 1234455556778888532 2 122220 136889987653222322 233334455467777632
Q ss_pred CCCcccceEEEeccCCcccCceEEcccC--CCCCCC--------------CCceEEEEcCCEEEEEcccCCCCCccccEE
Q 016774 173 YGLRLGDTWVLELSENFCFGSWQQLVTH--PSPPAR--------------SGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 236 (383)
Q Consensus 173 ~~~~~~~~~~~d~~~~~~~~~W~~~~~~--~~p~~r--------------~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~ 236 (383)
..+++-+-.-. +|+.+... ..+..+ ....+....++.++++|-.. .++
T Consensus 199 -----G~v~~S~D~G~----tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G-------~~~ 262 (398)
T PLN00033 199 -----GAIYVTSNAGR----NWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG-------NFY 262 (398)
T ss_pred -----ceEEEECCCCC----CceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc-------cEE
Confidence 22555543444 89987311 111111 11222333445566665443 244
Q ss_pred EEEcccCccc-eEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCc
Q 016774 237 FLDVYEGFFK-WVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGE 284 (383)
Q Consensus 237 ~~~~~~~~~~-W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~ 284 (383)
+-.-.. .+ |+.+. .+.++.-.++....++.++++|..
T Consensus 263 ~s~d~G--~~~W~~~~---------~~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 263 LTWEPG--QPYWQPHN---------RASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred EecCCC--CcceEEec---------CCCccceeeeeEcCCCCEEEEeCC
Confidence 333222 33 89884 333443333433367888887744
No 83
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=62.12 E-value=95 Score=26.09 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=35.8
Q ss_pred CcEEEEEcccCCCCCcccceEEEeccCCcccCceEE-----ccc--CCCCCCCCCceEEEEcCCEEEEEcccCCCCCccc
Q 016774 161 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQ-----LVT--HPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLN 233 (383)
Q Consensus 161 ~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~-----~~~--~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~ 233 (383)
++++|+|.| +..|+||...+ +-.. +.. ..+|.. ..++....++.+|+|-|.
T Consensus 110 ~~~~yfFkg--------~~y~ry~~~~~----~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g~-------- 167 (194)
T cd00094 110 NGKTYFFKG--------DKYWRYDEKTQ----KMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKGD-------- 167 (194)
T ss_pred CCEEEEEeC--------CEEEEEeCCCc----cccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEECC--------
Confidence 568999987 34788887554 2210 000 122322 234445544788988776
Q ss_pred cEEEEEccc
Q 016774 234 DVWFLDVYE 242 (383)
Q Consensus 234 ~v~~~~~~~ 242 (383)
..|+||..+
T Consensus 168 ~y~~~d~~~ 176 (194)
T cd00094 168 QYWRFDPRS 176 (194)
T ss_pred EEEEEeCcc
Confidence 489999876
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=61.42 E-value=1.6e+02 Score=28.44 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=58.7
Q ss_pred eeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCcccc
Q 016774 155 AACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLND 234 (383)
Q Consensus 155 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~ 234 (383)
++..-.+++++.+|+. ..-+-+||.+++ ..-.++.....|..+.-+ ...++.+++.|+-+. -
T Consensus 73 s~~fR~DG~LlaaGD~------sG~V~vfD~k~r---~iLR~~~ah~apv~~~~f---~~~d~t~l~s~sDd~------v 134 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDE------SGHVKVFDMKSR---VILRQLYAHQAPVHVTKF---SPQDNTMLVSGSDDK------V 134 (487)
T ss_pred EEEeecCCeEEEccCC------cCcEEEeccccH---HHHHHHhhccCceeEEEe---cccCCeEEEecCCCc------e
Confidence 4444467799999985 345888886553 011111122233222211 123688888887642 2
Q ss_pred EEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774 235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 301 (383)
Q Consensus 235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~ 301 (383)
+-.+|+.+ .. .++. ..+.--.-|.+ ...-.+++|++-||+++. +-.+|+.+
T Consensus 135 ~k~~d~s~--a~-v~~~-----l~~htDYVR~g--~~~~~~~hivvtGsYDg~------vrl~DtR~ 185 (487)
T KOG0310|consen 135 VKYWDLST--AY-VQAE-----LSGHTDYVRCG--DISPANDHIVVTGSYDGK------VRLWDTRS 185 (487)
T ss_pred EEEEEcCC--cE-EEEE-----ecCCcceeEee--ccccCCCeEEEecCCCce------EEEEEecc
Confidence 34445554 22 2221 11222223333 222278999999999984 45666653
No 85
>PRK04792 tolB translocation protein TolB; Provisional
Probab=60.84 E-value=1.7e+02 Score=28.46 Aligned_cols=61 Identities=10% Similarity=0.194 Sum_probs=33.9
Q ss_pred cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEec
Q 016774 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 251 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~ 251 (383)
..+|++|+.++ +-+++. ..+.... .....-+++.|++....+. ..+||.+|+++ .+.+++.
T Consensus 242 ~~L~~~dl~tg----~~~~lt--~~~g~~~-~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~t--g~~~~lt 302 (448)
T PRK04792 242 AEIFVQDIYTQ----VREKVT--SFPGING-APRFSPDGKKLALVLSKDG----QPEIYVVDIAT--KALTRIT 302 (448)
T ss_pred cEEEEEECCCC----CeEEec--CCCCCcC-CeeECCCCCEEEEEEeCCC----CeEEEEEECCC--CCeEECc
Confidence 57999999887 555554 2221111 1112222244554432221 24799999998 8887774
No 86
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=59.50 E-value=1.3e+02 Score=26.83 Aligned_cols=105 Identities=23% Similarity=0.399 Sum_probs=63.0
Q ss_pred CCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEE
Q 016774 160 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD 239 (383)
Q Consensus 160 ~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~ 239 (383)
.++.+|.--|. .+ -+.+.++|+.++ +-.+.. ++|..-.+=.++.+ +++||.+-=.. ...++||
T Consensus 54 ~~g~LyESTG~--yG--~S~l~~~d~~tg----~~~~~~--~l~~~~FgEGit~~-~d~l~qLTWk~------~~~f~yd 116 (264)
T PF05096_consen 54 DDGTLYESTGL--YG--QSSLRKVDLETG----KVLQSV--PLPPRYFGEGITIL-GDKLYQLTWKE------GTGFVYD 116 (264)
T ss_dssp ETTEEEEEECS--TT--EEEEEEEETTTS----SEEEEE--E-TTT--EEEEEEE-TTEEEEEESSS------SEEEEEE
T ss_pred CCCEEEEeCCC--CC--cEEEEEEECCCC----cEEEEE--ECCccccceeEEEE-CCEEEEEEecC------CeEEEEc
Confidence 56688887775 22 367999999997 554443 56665566667777 69999886653 2478899
Q ss_pred cccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774 240 VYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 301 (383)
Q Consensus 240 ~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~ 301 (383)
.++ .+.+ +..+.+.-+-+.+. .+..|++--|.+ .++.+|+++
T Consensus 117 ~~t----l~~~--------~~~~y~~EGWGLt~-dg~~Li~SDGS~-------~L~~~dP~~ 158 (264)
T PF05096_consen 117 PNT----LKKI--------GTFPYPGEGWGLTS-DGKRLIMSDGSS-------RLYFLDPET 158 (264)
T ss_dssp TTT----TEEE--------EEEE-SSS--EEEE-CSSCEEEE-SSS-------EEEEE-TTT
T ss_pred ccc----ceEE--------EEEecCCcceEEEc-CCCEEEEECCcc-------ceEEECCcc
Confidence 865 4555 23333445556664 677788877754 255666553
No 87
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=54.99 E-value=2e+02 Score=27.63 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=17.6
Q ss_pred EEEEcCCEEEEEcCcCCCCCCCCcEEEEEcC
Q 016774 270 ATLILGGRVLIYGGEDSARRRKDDFWVLDTK 300 (383)
Q Consensus 270 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~ 300 (383)
.++..++.+++.|+.+++ +.+.|+.
T Consensus 283 Lais~DgtlLlSGd~dg~------VcvWdi~ 307 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGK------VCVWDIY 307 (476)
T ss_pred EEEecCccEEEeeCCCCC------EEEEecc
Confidence 333378999999999874 5555654
No 88
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=53.64 E-value=1.6e+02 Score=25.98 Aligned_cols=111 Identities=7% Similarity=0.043 Sum_probs=60.2
Q ss_pred CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceE
Q 016774 102 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTW 181 (383)
Q Consensus 102 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 181 (383)
.|.|+..||-. .+|+.|+ ++.+.++... -..-+-|+.+.-+.+-=++.|+. + ..+-
T Consensus 126 enSi~~AgGD~-------~~y~~dl-------E~G~i~r~~r----GHtDYvH~vv~R~~~~qilsG~E--D----GtvR 181 (325)
T KOG0649|consen 126 ENSILFAGGDG-------VIYQVDL-------EDGRIQREYR----GHTDYVHSVVGRNANGQILSGAE--D----GTVR 181 (325)
T ss_pred CCcEEEecCCe-------EEEEEEe-------cCCEEEEEEc----CCcceeeeeeecccCcceeecCC--C----ccEE
Confidence 45688888742 4888999 7888877543 13446666666333233344543 2 3467
Q ss_pred EEeccCCcccCceEEcc-c---CCCCCCCCCc--eEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774 182 VLELSENFCFGSWQQLV-T---HPSPPARSGH--SLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 250 (383)
Q Consensus 182 ~~d~~~~~~~~~W~~~~-~---~~~p~~r~~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i 250 (383)
+.|++|. +-.++- . .+...|.-+- .+... +..-++.||.. .+-.+++.. .+-+.+
T Consensus 182 vWd~kt~----k~v~~ie~yk~~~~lRp~~g~wigala~-~edWlvCGgGp-------~lslwhLrs--se~t~v 242 (325)
T KOG0649|consen 182 VWDTKTQ----KHVSMIEPYKNPNLLRPDWGKWIGALAV-NEDWLVCGGGP-------KLSLWHLRS--SESTCV 242 (325)
T ss_pred EEecccc----ceeEEeccccChhhcCcccCceeEEEec-cCceEEecCCC-------ceeEEeccC--CCceEE
Confidence 7788887 554443 1 1122222222 34445 45556666653 245566666 444444
No 89
>PRK04792 tolB translocation protein TolB; Provisional
Probab=49.84 E-value=2.5e+02 Score=27.21 Aligned_cols=97 Identities=11% Similarity=0.190 Sum_probs=49.7
Q ss_pred cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCE-EEEEcccCCCCCccccEEEEEcccCccceEEecccccC
Q 016774 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN 256 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~ 256 (383)
.++|.+|+.++ +.+++... . .... ......+++ |++..... . ..++|.+|+.+ .+++++..
T Consensus 286 ~~Iy~~dl~tg----~~~~lt~~--~-~~~~-~p~wSpDG~~I~f~s~~~--g--~~~Iy~~dl~~--g~~~~Lt~---- 347 (448)
T PRK04792 286 PEIYVVDIATK----ALTRITRH--R-AIDT-EPSWHPDGKSLIFTSERG--G--KPQIYRVNLAS--GKVSRLTF---- 347 (448)
T ss_pred eEEEEEECCCC----CeEECccC--C-CCcc-ceEECCCCCEEEEEECCC--C--CceEEEEECCC--CCEEEEec----
Confidence 57999999987 77777621 1 1111 112222344 44433221 1 24799999998 88888731
Q ss_pred CCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774 257 IPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 301 (383)
Q Consensus 257 ~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~ 301 (383)
.+.. ........+++.+++.+.... ..+++.+|+.+
T Consensus 348 -~g~~-----~~~~~~SpDG~~l~~~~~~~g---~~~I~~~dl~~ 383 (448)
T PRK04792 348 -EGEQ-----NLGGSITPDGRSMIMVNRTNG---KFNIARQDLET 383 (448)
T ss_pred -CCCC-----CcCeeECCCCCEEEEEEecCC---ceEEEEEECCC
Confidence 1111 111122245544444333221 34688899873
No 90
>PRK04922 tolB translocation protein TolB; Provisional
Probab=49.37 E-value=2.5e+02 Score=27.01 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=32.8
Q ss_pred ccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774 177 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 250 (383)
Q Consensus 177 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i 250 (383)
...++++|+.++ +-+++. ..+. ........-.+++|++..... . ..++|++|+.+ ..-+++
T Consensus 227 ~~~l~~~dl~~g----~~~~l~--~~~g-~~~~~~~SpDG~~l~~~~s~~-g---~~~Iy~~d~~~--g~~~~l 287 (433)
T PRK04922 227 RSAIYVQDLATG----QRELVA--SFRG-INGAPSFSPDGRRLALTLSRD-G---NPEIYVMDLGS--RQLTRL 287 (433)
T ss_pred CcEEEEEECCCC----CEEEec--cCCC-CccCceECCCCCEEEEEEeCC-C---CceEEEEECCC--CCeEEC
Confidence 356999999887 666665 2221 111112222223444332221 1 24799999988 666666
No 91
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=48.53 E-value=2.4e+02 Score=26.63 Aligned_cols=97 Identities=13% Similarity=0.213 Sum_probs=50.2
Q ss_pred cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCC
Q 016774 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 257 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~ 257 (383)
.++|.+|+.++ ..+++... ..... .....-.++.|++...... ..++|.+++.+ ..++++..
T Consensus 258 ~~i~~~d~~~~----~~~~l~~~--~~~~~-~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~--~~~~~l~~----- 319 (417)
T TIGR02800 258 PDIYVMDLDGK----QLTRLTNG--PGIDT-EPSWSPDGKSIAFTSDRGG----SPQIYMMDADG--GEVRRLTF----- 319 (417)
T ss_pred ccEEEEECCCC----CEEECCCC--CCCCC-CEEECCCCCEEEEEECCCC----CceEEEEECCC--CCEEEeec-----
Confidence 57999999887 66666521 11111 1111122234444332211 23799999988 77877731
Q ss_pred CCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcC
Q 016774 258 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 300 (383)
Q Consensus 258 ~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~ 300 (383)
. ...........+++.+++..... ....++.+|+.
T Consensus 320 -~----~~~~~~~~~spdg~~i~~~~~~~---~~~~i~~~d~~ 354 (417)
T TIGR02800 320 -R----GGYNASPSWSPDGDLIAFVHREG---GGFNIAVMDLD 354 (417)
T ss_pred -C----CCCccCeEECCCCCEEEEEEccC---CceEEEEEeCC
Confidence 1 11112222224566666654432 13468899987
No 92
>PRK00178 tolB translocation protein TolB; Provisional
Probab=48.34 E-value=2.5e+02 Score=26.80 Aligned_cols=60 Identities=8% Similarity=0.134 Sum_probs=33.3
Q ss_pred cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCC-EEEEEcccCCCCCccccEEEEEcccCccceEEec
Q 016774 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 251 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~ 251 (383)
..+|++|++++ +-+++. ..+. .......-.++ +|++..-.. . ..++|++|+.+ ...+++.
T Consensus 223 ~~l~~~~l~~g----~~~~l~--~~~g--~~~~~~~SpDG~~la~~~~~~-g---~~~Iy~~d~~~--~~~~~lt 283 (430)
T PRK00178 223 PRIFVQNLDTG----RREQIT--NFEG--LNGAPAWSPDGSKLAFVLSKD-G---NPEIYVMDLAS--RQLSRVT 283 (430)
T ss_pred CEEEEEECCCC----CEEEcc--CCCC--CcCCeEECCCCCEEEEEEccC-C---CceEEEEECCC--CCeEEcc
Confidence 47999999987 666665 1111 11112222233 444332211 1 14799999998 7787773
No 93
>PRK05137 tolB translocation protein TolB; Provisional
Probab=48.27 E-value=2.6e+02 Score=26.89 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=33.9
Q ss_pred cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEec
Q 016774 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 251 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~ 251 (383)
..+|++|+.++ +..++. ..+...... ...-.+++|++....+. ..+||.+|+.+ ..-.++.
T Consensus 226 ~~i~~~dl~~g----~~~~l~--~~~g~~~~~-~~SPDG~~la~~~~~~g----~~~Iy~~d~~~--~~~~~Lt 286 (435)
T PRK05137 226 PRVYLLDLETG----QRELVG--NFPGMTFAP-RFSPDGRKVVMSLSQGG----NTDIYTMDLRS--GTTTRLT 286 (435)
T ss_pred CEEEEEECCCC----cEEEee--cCCCcccCc-EECCCCCEEEEEEecCC----CceEEEEECCC--CceEEcc
Confidence 57999999887 766665 222211111 12222234444332211 24799999988 7666663
No 94
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=45.45 E-value=3.3e+02 Score=27.25 Aligned_cols=121 Identities=11% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCCCCcceeEEEECCE--EEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEEC-CcEEE
Q 016774 89 IPSGRFGHTCVVIGDC--LVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCID-NRKMV 165 (383)
Q Consensus 89 ~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~~i~ 165 (383)
+-.|+.+..++...-. ||+.|-- .+||++++ +..+|-..-... .+--. ++.++ -..++
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg-------~evYRlNL-------EqGrfL~P~~~~---~~~lN--~v~in~~hgLl 190 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSG-------SEVYRLNL-------EQGRFLNPFETD---SGELN--VVSINEEHGLL 190 (703)
T ss_pred eecCcCCccccccCCCccEEEeecC-------cceEEEEc-------cccccccccccc---cccce--eeeecCccceE
Confidence 3457777777776433 7766532 36999999 688887543221 11111 22222 23688
Q ss_pred EEcccCCCCCcccceEEEeccCCcccCceEEcc-cC---CCCC--CCCCceEEEEcCCEEEEEcccCCCCCccccEEEEE
Q 016774 166 IHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-TH---PSPP--ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD 239 (383)
Q Consensus 166 v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~---~~p~--~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~ 239 (383)
++||.+ +.|..+|+.++ =....+. .. ..|. .-..-++....++-|-+-=|... ..+++||
T Consensus 191 a~Gt~~------g~VEfwDpR~k---srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~-----G~v~iyD 256 (703)
T KOG2321|consen 191 ACGTED------GVVEFWDPRDK---SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST-----GSVLIYD 256 (703)
T ss_pred EecccC------ceEEEecchhh---hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC-----CcEEEEE
Confidence 888842 34677777654 0111221 00 1111 11223455565444544444422 2488999
Q ss_pred ccc
Q 016774 240 VYE 242 (383)
Q Consensus 240 ~~~ 242 (383)
+.+
T Consensus 257 LRa 259 (703)
T KOG2321|consen 257 LRA 259 (703)
T ss_pred ccc
Confidence 877
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.80 E-value=3e+02 Score=26.66 Aligned_cols=137 Identities=14% Similarity=0.167 Sum_probs=71.3
Q ss_pred EECCEEEEEcCccCCCCCccceeeeecccccCCcccc-cEEEccCCCCCCCccccceeEEECC-cEEEEEcccCCCCCcc
Q 016774 100 VIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITL-SWRLLDVGSIAPPARGAHAACCIDN-RKMVIHAGIGLYGLRL 177 (383)
Q Consensus 100 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~-~W~~~~~~~~~p~~r~~~~~~~~~~-~~i~v~GG~~~~~~~~ 177 (383)
..++++++-||++.. +-.+|+. .. .|..--.-+ .|.. .++.+.+ ..|.-+||
T Consensus 163 ~~~~hivvtGsYDg~------vrl~DtR-------~~~~~v~elnhg-~pVe----~vl~lpsgs~iasAgG-------- 216 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGK------VRLWDTR-------SLTSRVVELNHG-CPVE----SVLALPSGSLIASAGG-------- 216 (487)
T ss_pred cCCCeEEEecCCCce------EEEEEec-------cCCceeEEecCC-Ccee----eEEEcCCCCEEEEcCC--------
Confidence 345678899987542 4556663 22 333211111 2222 2344444 34555555
Q ss_pred cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCC
Q 016774 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 257 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~ 257 (383)
+.+-+.|+.++ -++..........--|+....++.-++.||.+. .|-+||+.. |+.+.
T Consensus 217 n~vkVWDl~~G------~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~------~VKVfd~t~----~Kvv~------ 274 (487)
T KOG0310|consen 217 NSVKVWDLTTG------GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR------HVKVFDTTN----YKVVH------ 274 (487)
T ss_pred CeEEEEEecCC------ceehhhhhcccceEEEEEeecCCceEeeccccc------ceEEEEccc----eEEEE------
Confidence 34666666644 111100011222223444445566777888753 488888544 77763
Q ss_pred CCCCCCCceeeEEEEEcCCEEEEEcCcCC
Q 016774 258 PAGFSLPRVGHSATLILGGRVLIYGGEDS 286 (383)
Q Consensus 258 ~~~~p~~r~~~~~~~~~~~~l~i~GG~~~ 286 (383)
.-..|.|... +.+..++.-.++|..++
T Consensus 275 s~~~~~pvLs--iavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 275 SWKYPGPVLS--IAVSPDDQTVVIGMSNG 301 (487)
T ss_pred eeecccceee--EEecCCCceEEEecccc
Confidence 2344555543 33346888899998876
No 96
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=44.06 E-value=3.6e+02 Score=27.37 Aligned_cols=135 Identities=12% Similarity=0.208 Sum_probs=0.0
Q ss_pred ccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc--cCCCCCCCCCceEEEEcCCEEEEEcccCCCC
Q 016774 152 GAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV--THPSPPARSGHSLTRIGGNRTVLFGGRGVGY 229 (383)
Q Consensus 152 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~--~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~ 229 (383)
+.+.+..++++++++.. ....+++.++..+. +.+++. ......+-..+-++.-.++.|-+++++.
T Consensus 431 a~~i~ftid~~k~~~~s------~~~~~le~~el~~p----s~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g--- 497 (691)
T KOG2048|consen 431 ASAISFTIDKNKLFLVS------KNIFSLEEFELETP----SFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG--- 497 (691)
T ss_pred ceeeEEEecCceEEEEe------cccceeEEEEecCc----chhhhhccccccCCCcceeEEEcCCCCEEEEEeccc---
Q ss_pred CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccccccc
Q 016774 230 EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ 309 (383)
Q Consensus 230 ~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~ 309 (383)
.|++|++++ .+-+.+. ..++.+....+......+.|.+.--.++ ++.||++..+
T Consensus 498 ----~I~v~nl~~--~~~~~l~-------~rln~~vTa~~~~~~~~~~lvvats~nQ-------v~efdi~~~~------ 551 (691)
T KOG2048|consen 498 ----QIFVYNLET--LESHLLK-------VRLNIDVTAAAFSPFVRNRLVVATSNNQ-------VFEFDIEARN------ 551 (691)
T ss_pred ----eEEEEEccc--ceeecch-------hccCcceeeeeccccccCcEEEEecCCe-------EEEEecchhh------
Q ss_pred ccccccccccccceeeccCCCCCCC
Q 016774 310 SMLDSRGLLLNMWKRLRAEGYKPNC 334 (383)
Q Consensus 310 ~~~~~~~~~~~~W~~~~~~~~~p~~ 334 (383)
-..|....+...+..+
T Consensus 552 ---------l~~ws~~nt~nlpk~~ 567 (691)
T KOG2048|consen 552 ---------LTRWSKNNTRNLPKEP 567 (691)
T ss_pred ---------hhhhhhccccccccCh
No 97
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=43.82 E-value=2.5e+02 Score=25.53 Aligned_cols=9 Identities=0% Similarity=0.290 Sum_probs=7.2
Q ss_pred cEEEEEccc
Q 016774 234 DVWFLDVYE 242 (383)
Q Consensus 234 ~v~~~~~~~ 242 (383)
.|.+||+++
T Consensus 149 ~v~v~d~~~ 157 (330)
T PRK11028 149 RIRLFTLSD 157 (330)
T ss_pred EEEEEEECC
Confidence 588999865
No 98
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=43.56 E-value=2.2e+02 Score=24.68 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=59.1
Q ss_pred CcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEE-cCCEEEEEcccCCCCCccccEEEEE
Q 016774 161 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRI-GGNRTVLFGGRGVGYEVLNDVWFLD 239 (383)
Q Consensus 161 ~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~i~v~GG~~~~~~~~~~v~~~~ 239 (383)
++.+|+..- .-..++++++.++ +-.... .+. -..++.. .++.+|+..... +.++|
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~----~~~~~~---~~~---~~G~~~~~~~g~l~v~~~~~--------~~~~d 66 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTG----EVEVID---LPG---PNGMAFDRPDGRLYVADSGG--------IAVVD 66 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTT----EEEEEE---SSS---EEEEEEECTTSEEEEEETTC--------EEEEE
T ss_pred CCEEEEEEc------CCCEEEEEECCCC----eEEEEe---cCC---CceEEEEccCCEEEEEEcCc--------eEEEe
Confidence 457777632 2357999999987 444443 222 1233333 467777776542 56679
Q ss_pred cccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCC--CcEEEEEcC
Q 016774 240 VYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRK--DDFWVLDTK 300 (383)
Q Consensus 240 ~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~--~~~~~~d~~ 300 (383)
+.+ .+++.+... .....+..+..-.++ ..++.||+-.-........ ..+++++..
T Consensus 67 ~~~--g~~~~~~~~---~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 67 PDT--GKVTVLADL---PDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp TTT--TEEEEEEEE---ETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred cCC--CcEEEEeec---cCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceEEECCC
Confidence 988 888887410 001113333333333 3677877753222111112 568999976
No 99
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=41.73 E-value=2.5e+02 Score=24.85 Aligned_cols=162 Identities=8% Similarity=0.025 Sum_probs=83.4
Q ss_pred CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCC-----CCCCC---cceeEEEECCEEEE
Q 016774 36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSG-----IPSGR---FGHTCVVIGDCLVL 107 (383)
Q Consensus 36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-----~p~~r---~~~~~~~~~~~iyv 107 (383)
|.+-.|-..+++++.+|.--. ..+++..|++.+. ....+..++.. .|-.. ...-.++.++-|+|
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~--~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWv 137 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTR--SVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWV 137 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCC--cEEEEEECCccccccccceecCCCceEEEEEcCCCEEE
Confidence 555666667777777776644 4678899999775 33336666521 12222 22334444555777
Q ss_pred EcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccC
Q 016774 108 FGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSE 187 (383)
Q Consensus 108 ~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~ 187 (383)
+=...+....+ -+-.+|+.... ...+|..- .+.+..+. +..+.+ .+|+........ ..-.+.||+.+
T Consensus 138 IYat~~~~g~i-vvskld~~tL~---v~~tw~T~-----~~k~~~~n-aFmvCG-vLY~~~s~~~~~--~~I~yafDt~t 204 (250)
T PF02191_consen 138 IYATEDNNGNI-VVSKLDPETLS---VEQTWNTS-----YPKRSAGN-AFMVCG-VLYATDSYDTRD--TEIFYAFDTYT 204 (250)
T ss_pred EEecCCCCCcE-EEEeeCcccCc---eEEEEEec-----cCchhhcc-eeeEee-EEEEEEECCCCC--cEEEEEEECCC
Confidence 65443322100 12233331111 36677742 23333333 333444 788887654332 34468999988
Q ss_pred CcccCceEEcccCCCCCCCCCceEEEE--cCCEEEEEc
Q 016774 188 NFCFGSWQQLVTHPSPPARSGHSLTRI--GGNRTVLFG 223 (383)
Q Consensus 188 ~~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~i~v~G 223 (383)
+ +=..+. -+.+.+-..++++.. .+++||+.-
T Consensus 205 ~----~~~~~~-i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 205 G----KEEDVS-IPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred C----ceecee-eeeccccCceEeeeECCCCCeEEEEE
Confidence 7 444333 123333334445544 246677764
No 100
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=41.07 E-value=2.2e+02 Score=23.98 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=39.2
Q ss_pred CcccceEEEeccCCcccCceEEcccCC---CCCCCCCceEEEEcCCEE-EEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774 175 LRLGDTWVLELSENFCFGSWQQLVTHP---SPPARSGHSLTRIGGNRT-VLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 250 (383)
Q Consensus 175 ~~~~~~~~~d~~~~~~~~~W~~~~~~~---~p~~r~~~~~~~~~~~~i-~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i 250 (383)
.-..++|++|+.++ .|..+...+ .-.|.. +.-+.+..| +++|.....-.--..+|.|++.+ ..=+.+
T Consensus 85 EgiGkIYIkn~~~~----~~~~L~i~~~~~k~sPK~---i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~t--g~~~~l 155 (200)
T PF15525_consen 85 EGIGKIYIKNLNNN----NWWSLQIDQNEEKYSPKY---IEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNT--GNLTEL 155 (200)
T ss_pred ccceeEEEEecCCC----ceEEEEecCcccccCCce---eEEecCCcEEEEEccccceEccCCeEEEEEccC--CceeEe
Confidence 45789999999988 777665212 223332 233434444 45553211111123699999999 777776
No 101
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=40.73 E-value=3e+02 Score=25.48 Aligned_cols=114 Identities=15% Similarity=0.078 Sum_probs=52.1
Q ss_pred CCceEEEEcCCE-EEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcC
Q 016774 207 SGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGED 285 (383)
Q Consensus 207 ~~~~~~~~~~~~-i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~ 285 (383)
..|++....+++ +|+.. .+ .+.|+.|+++....+.+... .....+-.--.|.+..-.+..+|+..-.
T Consensus 145 h~H~v~~~pdg~~v~v~d-lG-----~D~v~~~~~~~~~~~l~~~~-----~~~~~~G~GPRh~~f~pdg~~~Yv~~e~- 212 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPD-LG-----ADRVYVYDIDDDTGKLTPVD-----SIKVPPGSGPRHLAFSPDGKYAYVVNEL- 212 (345)
T ss_dssp CEEEEEE-TTSSEEEEEE-TT-----TTEEEEEEE-TTS-TEEEEE-----EEECSTTSSEEEEEE-TTSSEEEEEETT-
T ss_pred cceeEEECCCCCEEEEEe-cC-----CCEEEEEEEeCCCceEEEee-----ccccccCCCCcEEEEcCCcCEEEEecCC-
Confidence 446666665444 55542 21 23699999987222254421 0011111122344443234578888754
Q ss_pred CCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCC---Cc-cceeeeecCCCcEEEEEc
Q 016774 286 SARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPN---CR-SFHRACPDYSGRYLYVFG 353 (383)
Q Consensus 286 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~---~r-~~~~~~~~~~~~~l~v~G 353 (383)
.+.+..|++... ++.++.+......|. .. ..+..++..+++.||+--
T Consensus 213 -----s~~v~v~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 213 -----SNTVSVFDYDPS----------------DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp -----TTEEEEEEEETT----------------TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred -----CCcEEEEeeccc----------------CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence 345667766522 345555443222322 22 233344446677777754
No 102
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=39.03 E-value=3.3e+02 Score=25.52 Aligned_cols=72 Identities=6% Similarity=-0.124 Sum_probs=42.9
Q ss_pred CEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEccc---CCCCCcccc
Q 016774 103 DCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGI---GLYGLRLGD 179 (383)
Q Consensus 103 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~---~~~~~~~~~ 179 (383)
.++||.-...... .+.++++|. .+.+-... .+.+...|....-+++.+|++-.. ...+...+.
T Consensus 13 ~~v~V~d~~~~~~--~~~v~ViD~-------~~~~v~g~-----i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~ 78 (352)
T TIGR02658 13 RRVYVLDPGHFAA--TTQVYTIDG-------EAGRVLGM-----TDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDY 78 (352)
T ss_pred CEEEEECCccccc--CceEEEEEC-------CCCEEEEE-----EEccCCCceeECCCCCEEEEEeccccccccCCCCCE
Confidence 4588876542222 277999998 34443322 233333334444455689998763 234456788
Q ss_pred eEEEeccCC
Q 016774 180 TWVLELSEN 188 (383)
Q Consensus 180 ~~~~d~~~~ 188 (383)
+..+|+.+.
T Consensus 79 V~v~D~~t~ 87 (352)
T TIGR02658 79 VEVIDPQTH 87 (352)
T ss_pred EEEEECccC
Confidence 999999986
No 103
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=38.47 E-value=3.5e+02 Score=25.62 Aligned_cols=154 Identities=12% Similarity=0.008 Sum_probs=0.0
Q ss_pred ceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCc--
Q 016774 154 HAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEV-- 231 (383)
Q Consensus 154 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~-- 231 (383)
.......+++.+++ +.+..|.....++++|+.++ +.++ ..........++-..++..+++...+.....
T Consensus 127 ~~~~~Spdg~~la~-~~s~~G~e~~~l~v~Dl~tg------~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 127 GGFSVSPDGKRLAY-SLSDGGSEWYTLRVFDLETG------KFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEETTTSSEEEE-EEEETTSSEEEEEEEETTTT------EEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeECCCCCEEEE-EecCCCCceEEEEEEECCCC------cCcC--CcccccccceEEEeCCCCEEEEEEeCccccccc
Q ss_pred ---cccEEEEEcccCccceE--EecccccCCCCCCCCCce-eeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccc
Q 016774 232 ---LNDVWFLDVYEGFFKWV--QIPYELQNIPAGFSLPRV-GHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFT 305 (383)
Q Consensus 232 ---~~~v~~~~~~~~~~~W~--~i~~~~~~~~~~~p~~r~-~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~ 305 (383)
...|+++.+.+ ..-+ .+ -..+.... ...+....+++.+++.-..... .+++|.+|+.
T Consensus 198 ~~~~~~v~~~~~gt--~~~~d~lv--------fe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~----- 260 (414)
T PF02897_consen 198 SGYPRQVYRHKLGT--PQSEDELV--------FEEPDEPFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLD----- 260 (414)
T ss_dssp CGCCEEEEEEETTS---GGG-EEE--------EC-TTCTTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECC-----
T ss_pred CCCCcEEEEEECCC--ChHhCeeE--------EeecCCCcEEEEEEecCcccEEEEEEEcccc--CCeEEEEecc-----
Q ss_pred ccccccccccccccc-----cceeeccCCCCCCCccceeeeecCCCcEEEEE
Q 016774 306 SVQQSMLDSRGLLLN-----MWKRLRAEGYKPNCRSFHRACPDYSGRYLYVF 352 (383)
Q Consensus 306 ~~~~~~~~~~~~~~~-----~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~ 352 (383)
.. .|..+.. +..-..+..... ++.+||.
T Consensus 261 -------------~~~~~~~~~~~l~~----~~~~~~~~v~~~--~~~~yi~ 293 (414)
T PF02897_consen 261 -------------DGGSPDAKPKLLSP----REDGVEYYVDHH--GDRLYIL 293 (414)
T ss_dssp -------------CTTTSS-SEEEEEE----SSSS-EEEEEEE--TTEEEEE
T ss_pred -------------ccCCCcCCcEEEeC----CCCceEEEEEcc--CCEEEEe
No 104
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=37.41 E-value=2.9e+02 Score=24.40 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=63.6
Q ss_pred cccEEEccCCC--CCCCccccceeEEE-CCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceE
Q 016774 135 TLSWRLLDVGS--IAPPARGAHAACCI-DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSL 211 (383)
Q Consensus 135 ~~~W~~~~~~~--~~p~~r~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~ 211 (383)
+..|+...+.. ..+.|-. .++... ..+.++..||- .-+|..|++++ +.+..- .-..-+.|+.
T Consensus 98 K~lwe~~~P~~~~~~evPeI-Nam~ldP~enSi~~AgGD-------~~~y~~dlE~G----~i~r~~---rGHtDYvH~v 162 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEI-NAMWLDPSENSILFAGGD-------GVIYQVDLEDG----RIQREY---RGHTDYVHSV 162 (325)
T ss_pred hhhhhhcCccccCcccCCcc-ceeEeccCCCcEEEecCC-------eEEEEEEecCC----EEEEEE---cCCcceeeee
Confidence 55676654432 1233322 233333 44578888872 34899999998 665553 2223466776
Q ss_pred EEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceee--EEEEEcCCEEEEEcCc
Q 016774 212 TRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGH--SATLILGGRVLIYGGE 284 (383)
Q Consensus 212 ~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~--~~~~~~~~~l~i~GG~ 284 (383)
+.-..+-=++.|+.+. .+.+.|..+ .+-.++--... ..+.-.|..+- .+.. .+...+++||-
T Consensus 163 v~R~~~~qilsG~EDG------tvRvWd~kt--~k~v~~ie~yk--~~~~lRp~~g~wigala-~~edWlvCGgG 226 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDG------TVRVWDTKT--QKHVSMIEPYK--NPNLLRPDWGKWIGALA-VNEDWLVCGGG 226 (325)
T ss_pred eecccCcceeecCCCc------cEEEEeccc--cceeEEecccc--ChhhcCcccCceeEEEe-ccCceEEecCC
Confidence 6532233445566532 377778877 55544420000 11111222222 3333 66777778775
No 105
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=36.61 E-value=3.8e+02 Score=25.47 Aligned_cols=208 Identities=12% Similarity=0.071 Sum_probs=85.1
Q ss_pred CEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEE-cCccCCCCCccceeeeecc
Q 016774 49 NCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLF-GGINDRGNRHNDTWIGQIA 127 (383)
Q Consensus 49 ~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~~~d~~ 127 (383)
++-++|+|.. ......|.+++.+. +-.++...+.....+...+.-.+.+|.+ .+. .++.+|+
T Consensus 47 G~kllF~s~~---dg~~nly~lDL~t~-----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~--------~l~~vdL- 109 (386)
T PF14583_consen 47 GRKLLFASDF---DGNRNLYLLDLATG-----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGR--------SLRRVDL- 109 (386)
T ss_dssp S-EEEEEE-T---TSS-EEEEEETTT------EEEE---SS-B-TTT-EE-TTSSEEEEEETTT--------EEEEEET-
T ss_pred CCEEEEEecc---CCCcceEEEEcccC-----EEEECccCCCCCccceEEecCCCeEEEEECCC--------eEEEEEC-
Confidence 3445666632 23457788888544 7778764333334443333333445444 342 4777777
Q ss_pred cccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccC----CC-------------CCcccceEEEeccCCcc
Q 016774 128 CHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIG----LY-------------GLRLGDTWVLELSENFC 190 (383)
Q Consensus 128 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~----~~-------------~~~~~~~~~~d~~~~~~ 190 (383)
++.+=+.+.. .|..-.+......+.+.-.+.|=.. .. ..+...+...|++++
T Consensus 110 ------~T~e~~~vy~---~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-- 178 (386)
T PF14583_consen 110 ------DTLEERVVYE---VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-- 178 (386)
T ss_dssp ------TT--EEEEEE-----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---
T ss_pred ------CcCcEEEEEE---CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--
Confidence 4555444443 2332222222222211222222110 00 123456888888887
Q ss_pred cCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEE
Q 016774 191 FGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSA 270 (383)
Q Consensus 191 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~ 270 (383)
..+.+-... .-.+|-...-.+..+++|--.+.-...-..||..+.+. ....++. ...+....+|--
T Consensus 179 --~~~~v~~~~---~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--~~~~~v~-------~~~~~e~~gHEf 244 (386)
T PF14583_consen 179 --ERKVVFEDT---DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--SNVKKVH-------RRMEGESVGHEF 244 (386)
T ss_dssp ---EEEEEEES---S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----------TTEEEEEEE
T ss_pred --ceeEEEecC---ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--Ccceeee-------cCCCCccccccc
Confidence 666654111 12345444333455666643321222233799999887 6666664 334455567766
Q ss_pred EEEcCCEEEEE-cCcCCCCCCCCcEEEEEcCC
Q 016774 271 TLILGGRVLIY-GGEDSARRRKDDFWVLDTKA 301 (383)
Q Consensus 271 ~~~~~~~l~i~-GG~~~~~~~~~~~~~~d~~~ 301 (383)
-+ .++..+.+ +...+.. ..-+..+|+.+
T Consensus 245 w~-~DG~~i~y~~~~~~~~--~~~i~~~d~~t 273 (386)
T PF14583_consen 245 WV-PDGSTIWYDSYTPGGQ--DFWIAGYDPDT 273 (386)
T ss_dssp E--TTSS-EEEEEEETTT----EEEEEE-TTT
T ss_pred cc-CCCCEEEEEeecCCCC--ceEEEeeCCCC
Confidence 65 55554443 3322211 12355677664
No 106
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=36.60 E-value=2.5e+02 Score=23.46 Aligned_cols=108 Identities=20% Similarity=0.297 Sum_probs=52.9
Q ss_pred cEEEEEcccCCCCCcccceEEEeccCCcccCceEE---cccCCCCC-CCCCceEEEEc-CCEEEEEcccCCCCCccccEE
Q 016774 162 RKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQ---LVTHPSPP-ARSGHSLTRIG-GNRTVLFGGRGVGYEVLNDVW 236 (383)
Q Consensus 162 ~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~---~~~~~~p~-~r~~~~~~~~~-~~~i~v~GG~~~~~~~~~~v~ 236 (383)
+++|+|-|. ..|+|+..+- .... +..-..|. +....++.... ++++|+|-|. ..|
T Consensus 63 ~~~yfFkg~--------~yw~~~~~~~----~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ 122 (194)
T cd00094 63 GKIYFFKGD--------KYWVYTGKNL----EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYW 122 (194)
T ss_pred CEEEEECCC--------EEEEEcCccc----ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEE
Confidence 689999762 4777775431 1111 11101121 12223344443 5789999885 378
Q ss_pred EEEcccCccceEEe-cccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774 237 FLDVYEGFFKWVQI-PYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 301 (383)
Q Consensus 237 ~~~~~~~~~~W~~i-~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~ 301 (383)
+||... .+-..- +....+.-..+|.. . .++....++++|++-|. ..|.||..+
T Consensus 123 ry~~~~--~~v~~~yP~~i~~~w~g~p~~-i-daa~~~~~~~~yfF~g~--------~y~~~d~~~ 176 (194)
T cd00094 123 RYDEKT--QKMDPGYPKLIETDFPGVPDK-V-DAAFRWLDGYYYFFKGD--------QYWRFDPRS 176 (194)
T ss_pred EEeCCC--ccccCCCCcchhhcCCCcCCC-c-ceeEEeCCCcEEEEECC--------EEEEEeCcc
Confidence 888765 332110 00000011122322 1 22333245788888776 478888763
No 107
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=32.95 E-value=4.2e+02 Score=24.93 Aligned_cols=59 Identities=8% Similarity=0.153 Sum_probs=32.6
Q ss_pred cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCC-EEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI 250 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i 250 (383)
..++++|+.++ +-..+. ..+.... +.....++ .|++..... -..++|.+++.+ ...+++
T Consensus 214 ~~i~v~d~~~g----~~~~~~--~~~~~~~--~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~--~~~~~l 273 (417)
T TIGR02800 214 PEIYVQDLATG----QREKVA--SFPGMNG--APAFSPDGSKLAVSLSKD----GNPDIYVMDLDG--KQLTRL 273 (417)
T ss_pred cEEEEEECCCC----CEEEee--cCCCCcc--ceEECCCCCEEEEEECCC----CCccEEEEECCC--CCEEEC
Confidence 57999999887 555554 2221111 12222233 454443221 124699999988 777766
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=32.67 E-value=3.4e+02 Score=23.68 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=47.9
Q ss_pred CEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECC-cEEEEEcccCCCCCcccceE
Q 016774 103 DCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDN-RKMVIHAGIGLYGLRLGDTW 181 (383)
Q Consensus 103 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~ 181 (383)
..+|+.++.. +.+.++|+ .+.+.......+ ..+ ...+...+ +.+|+.++. ...+.
T Consensus 43 ~~l~~~~~~~------~~v~~~d~-------~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------~~~l~ 98 (300)
T TIGR03866 43 KLLYVCASDS------DTIQVIDL-------ATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------DNLVT 98 (300)
T ss_pred CEEEEEECCC------CeEEEEEC-------CCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------CCeEE
Confidence 3477776532 34788888 344443321111 111 12333333 346665432 13588
Q ss_pred EEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEccc
Q 016774 182 VLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE 242 (383)
Q Consensus 182 ~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~ 242 (383)
.+|+.+. + .+. ..+.....+++....++.+++++.... +.+..+|..+
T Consensus 99 ~~d~~~~----~--~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~ 146 (300)
T TIGR03866 99 VIDIETR----K--VLA--EIPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKT 146 (300)
T ss_pred EEECCCC----e--EEe--EeeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCC
Confidence 8998875 2 222 111111112334444566666665421 2356677765
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=31.80 E-value=3.5e+02 Score=23.59 Aligned_cols=9 Identities=33% Similarity=0.327 Sum_probs=7.3
Q ss_pred cEEEEEccc
Q 016774 234 DVWFLDVYE 242 (383)
Q Consensus 234 ~v~~~~~~~ 242 (383)
.+.+||+++
T Consensus 180 ~v~i~d~~~ 188 (300)
T TIGR03866 180 TVSVIDVAT 188 (300)
T ss_pred EEEEEEcCc
Confidence 488899877
No 110
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=31.65 E-value=63 Score=17.78 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=13.8
Q ss_pred ccceeEEECCcEEEEEcc
Q 016774 152 GAHAACCIDNRKMVIHAG 169 (383)
Q Consensus 152 ~~~~~~~~~~~~i~v~GG 169 (383)
..|+++...++.+|.+|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 578888888889999984
No 111
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=31.65 E-value=5.5e+02 Score=25.80 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=40.0
Q ss_pred CccccceeEEECCcE-EEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEE-cCCEEEEEcccC
Q 016774 149 PARGAHAACCIDNRK-MVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRI-GGNRTVLFGGRG 226 (383)
Q Consensus 149 ~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~i~v~GG~~ 226 (383)
.|+.+.-+++..-.+ ||+. |. -+++|++|++.+ .|-.-- ..-.+-.. ++.+ ..+.|+.+||.+
T Consensus 132 IP~~GRDm~y~~~scDly~~-gs------g~evYRlNLEqG----rfL~P~--~~~~~~lN--~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLV-GS------GSEVYRLNLEQG----RFLNPF--ETDSGELN--VVSINEEHGLLACGTED 196 (703)
T ss_pred cCcCCccccccCCCccEEEe-ec------CcceEEEEcccc----cccccc--ccccccce--eeeecCccceEEecccC
Confidence 355555555543333 5444 42 367999999988 775433 11111122 2222 236689999864
Q ss_pred CCCCccccEEEEEccc
Q 016774 227 VGYEVLNDVWFLDVYE 242 (383)
Q Consensus 227 ~~~~~~~~v~~~~~~~ 242 (383)
. .|.++|+..
T Consensus 197 g------~VEfwDpR~ 206 (703)
T KOG2321|consen 197 G------VVEFWDPRD 206 (703)
T ss_pred c------eEEEecchh
Confidence 2 366677654
No 112
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=30.71 E-value=1e+02 Score=27.23 Aligned_cols=55 Identities=5% Similarity=0.073 Sum_probs=33.4
Q ss_pred CCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccC
Q 016774 160 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRG 226 (383)
Q Consensus 160 ~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~ 226 (383)
.+..+||+||.+ --+++||..|+ ..+..-..-..-.-||+-.-.++.+|..|-.+
T Consensus 234 P~k~~fVaGged------~~~~kfDy~Tg------eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 234 PKKEFFVAGGED------FKVYKFDYNTG------EEIGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CCCceEEecCcc------eEEEEEeccCC------ceeeecccCCCCceEEEEECCCCceeeccCCC
Confidence 444799999963 23788998887 33331111112223555555678888888764
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=30.48 E-value=5e+02 Score=25.00 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=42.4
Q ss_pred cccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCC
Q 016774 151 RGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYE 230 (383)
Q Consensus 151 r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~ 230 (383)
...++++...|+.||..|-. -..+-+||+++. ..+. ..|.--.--.++...+|-.|+.-+.++.
T Consensus 348 v~~ts~~fHpDgLifgtgt~------d~~vkiwdlks~------~~~a--~Fpght~~vk~i~FsENGY~Lat~add~-- 411 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTP------DGVVKIWDLKSQ------TNVA--KFPGHTGPVKAISFSENGYWLATAADDG-- 411 (506)
T ss_pred ceeEEeeEcCCceEEeccCC------CceEEEEEcCCc------cccc--cCCCCCCceeEEEeccCceEEEEEecCC--
Confidence 34566666777666666532 234778888776 2333 3333222223455566777777776432
Q ss_pred ccccEEEEEccc
Q 016774 231 VLNDVWFLDVYE 242 (383)
Q Consensus 231 ~~~~v~~~~~~~ 242 (383)
.|..+|+..
T Consensus 412 ---~V~lwDLRK 420 (506)
T KOG0289|consen 412 ---SVKLWDLRK 420 (506)
T ss_pred ---eEEEEEehh
Confidence 388889876
No 114
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=30.43 E-value=80 Score=16.93 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=17.2
Q ss_pred ceeeEEEEEcCCEEEEEcCcCCC
Q 016774 265 RVGHSATLILGGRVLIYGGEDSA 287 (383)
Q Consensus 265 r~~~~~~~~~~~~l~i~GG~~~~ 287 (383)
+..|+-.++.+++..++|+.+-.
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~ 25 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLD 25 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCC
Confidence 45566666689999999998643
No 115
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=30.37 E-value=2.1e+02 Score=25.67 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=37.2
Q ss_pred eeCCEEEEEccccCCCC-CCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCc
Q 016774 46 FVSNCLVLFGGGCEGGR-HLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGI 111 (383)
Q Consensus 46 ~~~~~i~v~GG~~~~~~-~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 111 (383)
.++++.+|+|=.....+ ..+.+..|... ...+|..++..+--.....-.+.+++.+ |+||.
T Consensus 34 ~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~----g~~~w~~v~~~~~~~LqDPF~t~I~gel-ifGGv 95 (298)
T PF08950_consen 34 EYNGKTVIAGRVEKRDSWEHSEVRFFEET----GKDEWTPVEGAPVFQLQDPFVTRIQGEL-IFGGV 95 (298)
T ss_dssp EETTEEEEEEEEE-TT-SS--EEEEEEEE----ETTEEEE-TT---BS-EEEEEEEETTEE-EEEEE
T ss_pred eECCEEEEEeeeecCCchhccEEEEEEEe----CCCeEEECCCcceEEecCcceeeECCEE-EEeeE
Confidence 45789888876544444 45666666654 1349999986566678888888899987 67775
No 116
>PRK04043 tolB translocation protein TolB; Provisional
Probab=27.84 E-value=5.5e+02 Score=24.65 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=36.2
Q ss_pred cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcC-CEEEEEcccCCCCCccccEEEEEcccCccceEEec
Q 016774 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGG-NRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 251 (383)
Q Consensus 178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~-~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~ 251 (383)
.++|.+|+.++ .++++.. .+. .......-.+ ++|+..-... -..+||.+|+++ ...+++.
T Consensus 257 ~~Iy~~dl~~g----~~~~LT~--~~~--~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~--g~~~rlt 317 (419)
T PRK04043 257 PDIYLYDTNTK----TLTQITN--YPG--IDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNS--GSVEQVV 317 (419)
T ss_pred cEEEEEECCCC----cEEEccc--CCC--ccCccEECCCCCEEEEEECCC----CCceEEEEECCC--CCeEeCc
Confidence 68999999988 8888862 221 1111122223 4455543331 124799999998 7787774
No 117
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=27.79 E-value=3.7e+02 Score=22.66 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=41.2
Q ss_pred CCCccceeeeecccccCCcccccEEEccCCCC--CCCccccceeEEECCcEEEEEcccCCCC--CcccceEEEeccCCcc
Q 016774 115 GNRHNDTWIGQIACHENLGITLSWRLLDVGSI--APPARGAHAACCIDNRKMVIHAGIGLYG--LRLGDTWVLELSENFC 190 (383)
Q Consensus 115 ~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~--~p~~r~~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~d~~~~~~ 190 (383)
..-...+|++|+ ..+.|..+..... --.|. -...+++..|.|+=|.. .+ ..-..+|.|++.++
T Consensus 84 eEgiGkIYIkn~-------~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a-~GTvS~GGnLy~~nl~tg-- 150 (200)
T PF15525_consen 84 EEGIGKIYIKNL-------NNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYA-HGTVSKGGNLYKYNLNTG-- 150 (200)
T ss_pred cccceeEEEEec-------CCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccc-cceEccCCeEEEEEccCC--
Confidence 344778999998 5777766644321 22333 35566665544443331 22 22467999999998
Q ss_pred cCceEEcc
Q 016774 191 FGSWQQLV 198 (383)
Q Consensus 191 ~~~W~~~~ 198 (383)
.=+.+.
T Consensus 151 --~~~~ly 156 (200)
T PF15525_consen 151 --NLTELY 156 (200)
T ss_pred --ceeEee
Confidence 666665
No 118
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.98 E-value=4.6e+02 Score=23.50 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred EEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCC
Q 016774 211 LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRR 290 (383)
Q Consensus 211 ~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~ 290 (383)
.++..+.+-+++-|..... +...|+.++...|+.+ -..|...++.+ +++. +++|-+++.
T Consensus 16 LVV~~dskT~v~igSHs~~-----~~avd~~sG~~~We~i-----------lg~RiE~sa~v-vgdf-VV~GCy~g~--- 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGI-----VIAVDPQSGNLIWEAI-----------LGVRIECSAIV-VGDF-VVLGCYSGG--- 74 (354)
T ss_pred EEEecCCceEEEEecCCce-----EEEecCCCCcEEeehh-----------hCceeeeeeEE-ECCE-EEEEEccCc---
Q ss_pred CCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeec---CCCcEEEEE
Q 016774 291 KDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPD---YSGRYLYVF 352 (383)
Q Consensus 291 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~~~l~v~ 352 (383)
+|.++.++- +..|.-+....-.-.+...+..-++ ..+..+|++
T Consensus 75 ---lYfl~~~tG----------------s~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yal 120 (354)
T KOG4649|consen 75 ---LYFLCVKTG----------------SQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYAL 120 (354)
T ss_pred ---EEEEEecch----------------hheeeeeehhhhccceEEcCCCceEEEecCCCcEEEe
No 119
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=25.85 E-value=8e+02 Score=25.88 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred EccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCC------cceeEEEECCEEEEEcCccCCCCCccceeeeecc
Q 016774 54 FGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGR------FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIA 127 (383)
Q Consensus 54 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 127 (383)
+|| .......+..-.++..+-..-...|+--....+.++ ...+-+++++.+|+...... ++.+|.
T Consensus 141 yg~-~~~~~RySpL~qIn~~NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~~~-------V~ALDa- 211 (764)
T TIGR03074 141 YGR-TQAGQRYSPLDQINPDNVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKVGDTLYLCTPHNK-------VIALDA- 211 (764)
T ss_pred cCC-CCcccccCcccccCcccccCceEEEEEECCCccccccccccccccCCEEECCEEEEECCCCe-------EEEEEC-
Q ss_pred cccCCcccccEEEccCCCCC----------------------------CCccccceeEEECCcEEEEEcccCCCCCcccc
Q 016774 128 CHENLGITLSWRLLDVGSIA----------------------------PPARGAHAACCIDNRKMVIHAGIGLYGLRLGD 179 (383)
Q Consensus 128 ~~~~~~~~~~W~~~~~~~~~----------------------------p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~ 179 (383)
.+-+..|+.-...... |........+...++++|.+-..+...
T Consensus 212 ----~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~----- 282 (764)
T TIGR03074 212 ----ATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKL----- 282 (764)
T ss_pred ----CCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCE-----
Q ss_pred eEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCC----CccccEEEEEcccCccceE
Q 016774 180 TWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY----EVLNDVWFLDVYEGFFKWV 248 (383)
Q Consensus 180 ~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~----~~~~~v~~~~~~~~~~~W~ 248 (383)
+|.|..+.. ..-+......+......++..+--+.++|+|+..... .....|..||.+++...|+
T Consensus 283 ~W~fg~~G~----vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 283 CEDFGNNGT----VDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEecCCCc----eeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
No 120
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=24.34 E-value=5.8e+02 Score=23.75 Aligned_cols=155 Identities=13% Similarity=0.137 Sum_probs=78.6
Q ss_pred EEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCccc
Q 016774 99 VVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLG 178 (383)
Q Consensus 99 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~ 178 (383)
+..++++|+.. .++ .++.+|.. +-...|+..... ............++++|+-... .
T Consensus 65 ~~~dg~v~~~~---~~G----~i~A~d~~-----~g~~~W~~~~~~----~~~~~~~~~~~~~G~i~~g~~~-------g 121 (370)
T COG1520 65 ADGDGTVYVGT---RDG----NIFALNPD-----TGLVKWSYPLLG----AVAQLSGPILGSDGKIYVGSWD-------G 121 (370)
T ss_pred EeeCCeEEEec---CCC----cEEEEeCC-----CCcEEecccCcC----cceeccCceEEeCCeEEEeccc-------c
Confidence 56677788861 111 58888883 112248765432 0112222233335576664332 1
Q ss_pred ceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCC
Q 016774 179 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIP 258 (383)
Q Consensus 179 ~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~ 258 (383)
.+++||..+. +..|..-... . ++....+ .+.+..+|+.-. .+.++.+|.+++...|+.-. .
T Consensus 122 ~~y~ld~~~G--~~~W~~~~~~--~-~~~~~~~-v~~~~~v~~~s~-------~g~~~al~~~tG~~~W~~~~------~ 182 (370)
T COG1520 122 KLYALDASTG--TLVWSRNVGG--S-PYYASPP-VVGDGTVYVGTD-------DGHLYALNADTGTLKWTYET------P 182 (370)
T ss_pred eEEEEECCCC--cEEEEEecCC--C-eEEecCc-EEcCcEEEEecC-------CCeEEEEEccCCcEEEEEec------C
Confidence 6899998644 4688877632 1 3333233 333455554421 13588899887778898642 0
Q ss_pred CCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCC
Q 016774 259 AGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI 302 (383)
Q Consensus 259 ~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~ 302 (383)
... ..+.. +...+.++.+|+-.-. . ...++.+|.+.-
T Consensus 183 ~~~-~~~~~-~~~~~~~~~vy~~~~~-~----~~~~~a~~~~~G 219 (370)
T COG1520 183 APL-SLSIY-GSPAIASGTVYVGSDG-Y----DGILYALNAEDG 219 (370)
T ss_pred Ccc-ccccc-cCceeecceEEEecCC-C----cceEEEEEccCC
Confidence 111 11211 1111345555554221 1 126889998754
No 121
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.07 E-value=6.3e+02 Score=23.69 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=38.6
Q ss_pred cCCEEEEE--cCc-CCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCc-EE
Q 016774 274 LGGRVLIY--GGE-DSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGR-YL 349 (383)
Q Consensus 274 ~~~~l~i~--GG~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~-~l 349 (383)
.++++|+. ||- ......-+.++++|+. +++.+.. .+..+.-++.++-.+++ .|
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~--------------------t~kvi~~---i~vG~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAK--------------------TGKRLRK---IELGHEIDSINVSQDAKPLL 314 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECC--------------------CCeEEEE---EeCCCceeeEEECCCCCeEE
Confidence 45778884 222 1122335789999986 4555544 45566667777778788 88
Q ss_pred EEEcCcc
Q 016774 350 YVFGGMV 356 (383)
Q Consensus 350 ~v~GG~~ 356 (383)
|+.-+.+
T Consensus 315 yvtn~~s 321 (352)
T TIGR02658 315 YALSTGD 321 (352)
T ss_pred EEeCCCC
Confidence 8887653
No 122
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=22.87 E-value=6.1e+02 Score=23.41 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=72.9
Q ss_pred ccceeEEECC-cEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc---cCCCCCCCCCceEEEEcCCEEEEEcccCC
Q 016774 152 GAHAACCIDN-RKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV---THPSPPARSGHSLTRIGGNRTVLFGGRGV 227 (383)
Q Consensus 152 ~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~---~~~~p~~r~~~~~~~~~~~~i~v~GG~~~ 227 (383)
..|.+....+ +.+|+.. . -.+.++.|+++... .+.+... ......|| |.+..-.++.+|+..-..
T Consensus 145 h~H~v~~~pdg~~v~v~d-l-----G~D~v~~~~~~~~~--~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~s- 213 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPD-L-----GADRVYVYDIDDDT--GKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNELS- 213 (345)
T ss_dssp CEEEEEE-TTSSEEEEEE-T-----TTTEEEEEEE-TTS---TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETTT-
T ss_pred cceeEEECCCCCEEEEEe-c-----CCCEEEEEEEeCCC--ceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCCC-
Confidence 3456555544 4566652 1 24678888887651 0243322 11112223 333333335688876542
Q ss_pred CCCccccEEEEEcccCccceEEecccccCCCCCCCCCc-eeeEEEEEcC-CEEEEEcCcCCCCCCCCcEEEEEcCCCccc
Q 016774 228 GYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPR-VGHSATLILG-GRVLIYGGEDSARRRKDDFWVLDTKAIPFT 305 (383)
Q Consensus 228 ~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r-~~~~~~~~~~-~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~ 305 (383)
+.|..|++......++.++.-. ......... ..+...+..+ ..||+---. .+.+.+|+++..
T Consensus 214 -----~~v~v~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~--- 277 (345)
T PF10282_consen 214 -----NTVSVFDYDPSDGSLTEIQTIS--TLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPA--- 277 (345)
T ss_dssp -----TEEEEEEEETTTTEEEEEEEEE--SCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTT---
T ss_pred -----CcEEEEeecccCCceeEEEEee--eccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecC---
Confidence 3577777772115565553111 111112222 2233332234 456664322 456888888422
Q ss_pred ccccccccccccccccceeecc---CCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774 306 SVQQSMLDSRGLLLNMWKRLRA---EGYKPNCRSFHRACPDYSGRYLYVFGGMVD 357 (383)
Q Consensus 306 ~~~~~~~~~~~~~~~~W~~~~~---~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~ 357 (383)
+++.+.+.. .|.. || .+++..+++.||+.+..++
T Consensus 278 -------------~g~l~~~~~~~~~G~~--Pr---~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 278 -------------TGTLTLVQTVPTGGKF--PR---HFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp -------------TTTEEEEEEEEESSSS--EE---EEEE-TTSSEEEEEETTTT
T ss_pred -------------CCceEEEEEEeCCCCC--cc---EEEEeCCCCEEEEEecCCC
Confidence 233443332 2333 33 3445566777777664433
No 123
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=22.43 E-value=73 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=14.1
Q ss_pred EECCEEEEEcCccCCCCCccceeeeec
Q 016774 100 VIGDCLVLFGGINDRGNRHNDTWIGQI 126 (383)
Q Consensus 100 ~~~~~iyv~GG~~~~~~~~~~~~~~d~ 126 (383)
...+.++|.||..+=.-..+.+|.||+
T Consensus 34 ~~AG~F~vLGG~~EMpW~FdRlykydI 60 (103)
T PF14830_consen 34 HKAGTFFVLGGEKEMPWAFDRLYKYDI 60 (103)
T ss_dssp EEEEEEEE---TTS---B-SS-EEEE-
T ss_pred eEccEEEEcCCCccCccccCccchhhH
Confidence 445679999998664445788999998
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.09 E-value=3e+02 Score=25.78 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=38.3
Q ss_pred CEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCc
Q 016774 276 GRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM 355 (383)
Q Consensus 276 ~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~ 355 (383)
++=++-|+++. .+-+|... .+.-..+ .-+.|+.|..++-++-+.=||+.|.
T Consensus 284 G~EfvsgsyDk------sIRIf~~~------------------~~~SRdi-----YhtkRMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 284 GQEFVSGSYDK------SIRIFPVN------------------HGHSRDI-----YHTKRMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred cchhccccccc------eEEEeecC------------------CCcchhh-----hhHhhhheeeEEEEeccccEEEecC
Confidence 55677777754 35666665 3333333 4578888888888888899999998
Q ss_pred cCCcc
Q 016774 356 VDGLV 360 (383)
Q Consensus 356 ~~~~~ 360 (383)
.+.++
T Consensus 335 dd~nv 339 (433)
T KOG0268|consen 335 DDGNV 339 (433)
T ss_pred CCcce
Confidence 76543
Done!