Query 016775
Match_columns 383
No_of_seqs 253 out of 715
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:35:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.4 1.4E-07 4.7E-12 76.5 3.5 76 14-89 3-92 (101)
2 3ogl_Q JAZ1 incomplete degron 94.8 0.015 5.3E-07 35.5 2.1 19 330-348 3-21 (21)
3 2yvr_A Transcription intermedi 92.2 0.058 2E-06 38.1 1.8 44 54-103 3-46 (50)
4 3ogk_Q JAZ1 incomplete degron 92.0 0.045 1.5E-06 33.9 0.9 19 333-351 1-19 (22)
5 2d8u_A Ubiquitin ligase TRIM63 91.7 0.065 2.2E-06 39.5 1.7 45 53-103 4-49 (64)
6 3ddt_A E3 ubiquitin-protein li 90.3 0.13 4.3E-06 36.1 2.0 41 57-103 6-47 (48)
7 2did_A Tripartite motif protei 88.6 0.23 8E-06 35.4 2.4 40 57-103 8-48 (53)
8 2jun_A Midline-1; B-BOX, TRIM, 88.3 0.13 4.5E-06 40.9 1.0 43 58-100 4-49 (101)
9 1fre_A Nuclear factor XNF7; zi 85.9 0.66 2.2E-05 31.3 3.3 31 58-89 4-35 (42)
10 2dja_A Midline-2; tripartite m 85.1 0.31 1.1E-05 37.7 1.5 43 55-103 16-59 (84)
11 2yrg_A Tripartite motif-contai 82.9 0.65 2.2E-05 34.1 2.3 42 55-103 12-54 (59)
12 2ffw_A Midline-1; B-BOX, ring 82.5 0.54 1.9E-05 36.6 1.9 43 14-56 30-75 (78)
13 2ffw_A Midline-1; B-BOX, ring 82.2 0.39 1.3E-05 37.5 0.9 44 57-100 30-76 (78)
14 2csv_A Tripartite motif protei 78.1 0.77 2.6E-05 34.7 1.4 39 58-103 19-57 (72)
15 2fc7_A ZZZ3 protein; structure 67.5 8.1 0.00028 30.5 5.0 51 52-103 17-74 (82)
16 2egm_A Tripartite motif-contai 67.3 0.9 3.1E-05 33.1 -0.5 27 58-85 19-45 (57)
17 4g92_A HAPB protein; transcrip 64.9 8.5 0.00029 29.5 4.4 28 350-377 36-64 (64)
18 2did_A Tripartite motif protei 62.3 8.1 0.00028 27.1 3.8 34 12-46 6-40 (53)
19 2d8u_A Ubiquitin ligase TRIM63 61.1 7.4 0.00025 28.2 3.5 49 10-64 4-53 (64)
20 2yrg_A Tripartite motif-contai 60.0 8.4 0.00029 28.0 3.6 33 13-46 13-46 (59)
21 2e5r_A Dystrobrevin alpha; ZZ 57.0 6.4 0.00022 29.5 2.5 48 53-102 9-60 (63)
22 2lri_C Autoimmune regulator; Z 52.4 12 0.00043 28.1 3.5 48 11-66 9-59 (66)
23 3ddt_A E3 ubiquitin-protein li 50.9 10 0.00035 26.1 2.6 35 13-47 5-40 (48)
24 2egm_A Tripartite motif-contai 50.2 9.1 0.00031 27.7 2.4 34 12-46 16-50 (57)
25 2dja_A Midline-2; tripartite m 49.9 18 0.00061 27.5 4.1 46 13-64 17-63 (84)
26 1fre_A Nuclear factor XNF7; zi 48.9 7.1 0.00024 26.0 1.5 31 15-46 4-35 (42)
27 4hc9_A Trans-acting T-cell-spe 47.0 5.4 0.00019 33.5 0.8 74 12-85 3-88 (115)
28 1z60_A TFIIH basal transcripti 44.4 5.5 0.00019 29.9 0.4 33 15-47 16-51 (59)
29 2yvr_A Transcription intermedi 41.8 15 0.00051 25.3 2.3 35 12-46 4-38 (50)
30 4gne_A Histone-lysine N-methyl 41.2 19 0.00064 29.8 3.2 69 6-84 7-84 (107)
31 2jne_A Hypothetical protein YF 33.7 27 0.00093 28.9 3.0 43 11-67 29-71 (101)
32 1mm2_A MI2-beta; PHD, zinc fin 32.5 45 0.0016 24.3 3.8 28 12-47 7-34 (61)
33 2d8v_A Zinc finger FYVE domain 30.7 23 0.00079 27.3 1.9 46 56-103 7-53 (67)
34 2csv_A Tripartite motif protei 30.1 29 0.001 25.7 2.4 33 13-46 17-49 (72)
35 2ea5_A Cell growth regulator w 25.9 94 0.0032 22.8 4.6 50 4-66 5-55 (68)
36 2lbm_A Transcriptional regulat 25.5 53 0.0018 28.4 3.6 78 6-83 6-89 (142)
37 2fiy_A Protein FDHE homolog; F 24.1 1E+02 0.0035 29.8 5.6 64 12-84 180-260 (309)
38 1f62_A Transcription factor WS 23.6 45 0.0015 23.1 2.3 45 16-65 2-49 (51)
39 2yqq_A Zinc finger HIT domain- 22.1 44 0.0015 24.8 2.0 24 57-81 12-35 (56)
40 2d8v_A Zinc finger FYVE domain 21.7 56 0.0019 25.2 2.6 49 9-59 3-52 (67)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.39 E-value=1.4e-07 Score=76.47 Aligned_cols=76 Identities=25% Similarity=0.507 Sum_probs=65.4
Q ss_pred CccCcccCC---CCcEEEeeCCCcccchhhhccccccchhhhhcccc----------cccCCCCCCCeeEEecCCCcccc
Q 016775 14 LALCDFCNS---KLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRS----------QICDNCRAEPVSVRCCTENLMLC 80 (383)
Q Consensus 14 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~VHsaN~L~~RH~Rv----------~LCd~C~~~pAsv~C~~d~a~LC 80 (383)
...|++|.. .+|+++|..+.+.||..|...+|..+...++|..+ ..|+.+...+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 367999984 68999999999999999999999977766788764 36999988889999999999999
Q ss_pred CccCC-CCCC
Q 016775 81 QDCDW-DSHY 89 (383)
Q Consensus 81 ~~CD~-~~H~ 89 (383)
..|.. ..|.
T Consensus 83 ~~C~~~~~H~ 92 (101)
T 2jun_A 83 ALCKLVGRHR 92 (101)
T ss_dssp HHHHHHTTTS
T ss_pred hhcCCCCCcC
Confidence 99986 4554
No 2
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=94.75 E-value=0.015 Score=35.53 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhccC.....
Q 016775 330 AKNRGNAMLRYKEKKKNRS..... 348 (383)
Q Consensus 330 ~~~R~~~~~ry~eKr~~R~..... 348 (383)
+..|...|+||.||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 5689999999999999874
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=92.20 E-value=0.058 Score=38.10 Aligned_cols=44 Identities=25% Similarity=0.563 Sum_probs=35.2
Q ss_pred cccccccCCCCCCCeeEEecCCCccccCccCCCCCCCCCCCCCCceeeec
Q 016775 54 HLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVE 103 (383)
Q Consensus 54 H~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~pv~ 103 (383)
..+...|+.+..++..+||..|...+|..|....|. .|...||.
T Consensus 3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ 46 (50)
T 2yvr_A 3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE 46 (50)
T ss_dssp CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence 356678999988899999999999999999765443 47676664
No 4
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=91.99 E-value=0.045 Score=33.90 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhccCCCC
Q 016775 333 RGNAMLRYKEKKKNRSYGK 351 (383)
Q Consensus 333 R~~~~~ry~eKr~~R~~~k 351 (383)
|...|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5678999999999987654
No 5
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=91.74 E-value=0.065 Score=39.53 Aligned_cols=45 Identities=18% Similarity=0.386 Sum_probs=35.1
Q ss_pred hcccccccCCCCCCCeeEEecCCCccccCccCC-CCCCCCCCCCCCceeeec
Q 016775 53 RHLRSQICDNCRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHERSSVE 103 (383)
Q Consensus 53 RH~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~anslas~H~R~pv~ 103 (383)
+..+..+|+.+..++..+||..|...+|..|.. ..|. .|...||+
T Consensus 4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 49 (64)
T 2d8u_A 4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 49 (64)
T ss_dssp CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHH
Confidence 455667899998889999999999999999974 3453 36666654
No 6
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=90.34 E-value=0.13 Score=36.14 Aligned_cols=41 Identities=20% Similarity=0.509 Sum_probs=32.2
Q ss_pred ccccCCCCCCCeeEEecCCCccccCccC-CCCCCCCCCCCCCceeeec
Q 016775 57 SQICDNCRAEPVSVRCCTENLMLCQDCD-WDSHYNSSVSSVHERSSVE 103 (383)
Q Consensus 57 v~LCd~C~~~pAsv~C~~d~a~LC~~CD-~~~H~anslas~H~R~pv~ 103 (383)
..+|..+..++..+||..|...+|..|. ...|. .|..+||+
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence 4579998888899999999999999996 33454 46666654
No 7
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=88.60 E-value=0.23 Score=35.38 Aligned_cols=40 Identities=20% Similarity=0.515 Sum_probs=32.0
Q ss_pred ccccCCCCCCCeeEEecCCCccccCccCC-CCCCCCCCCCCCceeeec
Q 016775 57 SQICDNCRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHERSSVE 103 (383)
Q Consensus 57 v~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~anslas~H~R~pv~ 103 (383)
..+|+.+. ++..+||..|...+|..|.. ..| ..|...||+
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLS 48 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECC
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHH
Confidence 35799997 78999999999999999975 344 347777765
No 8
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.26 E-value=0.13 Score=40.89 Aligned_cols=43 Identities=21% Similarity=0.430 Sum_probs=34.9
Q ss_pred cccCCCCC---CCeeEEecCCCccccCccCCCCCCCCCCCCCCcee
Q 016775 58 QICDNCRA---EPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERS 100 (383)
Q Consensus 58 ~LCd~C~~---~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~ 100 (383)
..|+.|.. .+|+.+|..|...+|..|....|..+.....|.++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 57999984 58999999999999999987667755555677765
No 9
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=85.90 E-value=0.66 Score=31.31 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=25.4
Q ss_pred cccCCCCCCCeeEEecCCCccccCccCC-CCCC
Q 016775 58 QICDNCRAEPVSVRCCTENLMLCQDCDW-DSHY 89 (383)
Q Consensus 58 ~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~ 89 (383)
.+|..+. ++..+||..|...+|..|.. ..|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 3688886 77999999999999999986 3443
No 10
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=85.11 E-value=0.31 Score=37.68 Aligned_cols=43 Identities=26% Similarity=0.587 Sum_probs=33.1
Q ss_pred ccccccCCCCCCCeeEEecCCCccccCccCC-CCCCCCCCCCCCceeeec
Q 016775 55 LRSQICDNCRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHERSSVE 103 (383)
Q Consensus 55 ~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~anslas~H~R~pv~ 103 (383)
....+|+.+...+..+||..|...+|..|.. ..|. .|...||+
T Consensus 16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 59 (84)
T 2dja_A 16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN 59 (84)
T ss_dssp SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHH
Confidence 3445899998888999999999999999976 4443 35555554
No 11
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.86 E-value=0.65 Score=34.11 Aligned_cols=42 Identities=17% Similarity=0.388 Sum_probs=32.1
Q ss_pred ccccccCCCCCCCeeEEecCCCccccCccCC-CCCCCCCCCCCCceeeec
Q 016775 55 LRSQICDNCRAEPVSVRCCTENLMLCQDCDW-DSHYNSSVSSVHERSSVE 103 (383)
Q Consensus 55 ~Rv~LCd~C~~~pAsv~C~~d~a~LC~~CD~-~~H~anslas~H~R~pv~ 103 (383)
.+..+|..+. .+..+||..|...+|..|.. ..| ..|...||+
T Consensus 12 ~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ 54 (59)
T 2yrg_A 12 QKVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTS 54 (59)
T ss_dssp CCSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECC
T ss_pred hcCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHH
Confidence 3445799887 67899999999999999975 334 347777765
No 12
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=82.47 E-value=0.54 Score=36.61 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=35.7
Q ss_pred CccCcccCC---CCcEEEeeCCCcccchhhhccccccchhhhhccc
Q 016775 14 LALCDFCNS---KLAVLYCTADSAKLCLFCDQQIHSANALSLRHLR 56 (383)
Q Consensus 14 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~VHsaN~L~~RH~R 56 (383)
...|++|.. .+|+..|....+.||..|=...|......++|.=
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 578999976 6799999999999999998887876655667753
No 13
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=82.19 E-value=0.39 Score=37.47 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=34.3
Q ss_pred ccccCCCCC---CCeeEEecCCCccccCccCCCCCCCCCCCCCCcee
Q 016775 57 SQICDNCRA---EPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERS 100 (383)
Q Consensus 57 v~LCd~C~~---~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~ 100 (383)
...|+.|.. .+|.-.|..|.+.+|..|-...|........|..+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 367999986 56999999999999999976557665556677654
No 14
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=78.11 E-value=0.77 Score=34.66 Aligned_cols=39 Identities=23% Similarity=0.490 Sum_probs=30.8
Q ss_pred cccCCCCCCCeeEEecCCCccccCccCCCCCCCCCCCCCCceeeec
Q 016775 58 QICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSVSSVHERSSVE 103 (383)
Q Consensus 58 ~LCd~C~~~pAsv~C~~d~a~LC~~CD~~~H~anslas~H~R~pv~ 103 (383)
.+|+.+. .+..+||..|...+|..|....|. .|...||+
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ 57 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVE 57 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHH
Confidence 5799995 889999999999999999764443 46666654
No 15
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=67.45 E-value=8.1 Score=30.49 Aligned_cols=51 Identities=24% Similarity=0.446 Sum_probs=34.6
Q ss_pred hhcccccccCCCCCCCee---EEecCCCc----cccCccCCCCCCCCCCCCCCceeeec
Q 016775 52 LRHLRSQICDNCRAEPVS---VRCCTENL----MLCQDCDWDSHYNSSVSSVHERSSVE 103 (383)
Q Consensus 52 ~RH~Rv~LCd~C~~~pAs---v~C~~d~a----~LC~~CD~~~H~anslas~H~R~pv~ 103 (383)
..|..+ .|+.|...|.. +.|..|.- -||+.|-+...........|.-.+|.
T Consensus 17 ~~H~~~-~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 17 VQHVGF-KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp CEESSC-CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CeeCcC-CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 345554 89999988754 89998875 59999986543333333457665554
No 16
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.28 E-value=0.9 Score=33.15 Aligned_cols=27 Identities=22% Similarity=0.551 Sum_probs=24.0
Q ss_pred cccCCCCCCCeeEEecCCCccccCccCC
Q 016775 58 QICDNCRAEPVSVRCCTENLMLCQDCDW 85 (383)
Q Consensus 58 ~LCd~C~~~pAsv~C~~d~a~LC~~CD~ 85 (383)
.+|..+. ++..+||..|...+|..|..
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~ 45 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRE 45 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCC
Confidence 4799995 78999999999999999975
No 17
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=64.87 E-value=8.5 Score=29.49 Aligned_cols=28 Identities=43% Similarity=0.478 Sum_probs=23.9
Q ss_pred CCcccchhhhhhhhcCCC-CCcccccCCC
Q 016775 350 GKQIRYESRKARADTRKR-VKGRFVKASE 377 (383)
Q Consensus 350 ~k~irY~~Rk~~A~~R~R-vkGrFvk~~~ 377 (383)
.|+.-|+||-..|-.|+| -.|||.+..|
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 466789999999999999 7799998764
No 18
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=62.29 E-value=8.1 Score=27.11 Aligned_cols=34 Identities=29% Similarity=0.629 Sum_probs=27.4
Q ss_pred CCCccCcccCCCCcEEEeeCCCcccchhhhc-cccc
Q 016775 12 SMLALCDFCNSKLAVLYCTADSAKLCLFCDQ-QIHS 46 (383)
Q Consensus 12 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~VHs 46 (383)
.....|..-+ .+-.+||..|...+|..|-. .-|.
T Consensus 6 ~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 40 (53)
T 2did_A 6 SGESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR 40 (53)
T ss_dssp CSCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT
T ss_pred cCCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC
Confidence 3456788887 67889999999999999986 4553
No 19
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=61.09 E-value=7.4 Score=28.17 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=35.3
Q ss_pred CCCCCccCcccCCCCcEEEeeCCCcccchhhhc-cccccchhhhhcccccccCCCC
Q 016775 10 GSSMLALCDFCNSKLAVLYCTADSAKLCLFCDQ-QIHSANALSLRHLRSQICDNCR 64 (383)
Q Consensus 10 ~~~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~VHsaN~L~~RH~Rv~LCd~C~ 64 (383)
+......|..-...+-.+||..|...+|..|-. .-|. .|.-+++-+...
T Consensus 4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~ 53 (64)
T 2d8u_A 4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQ 53 (64)
T ss_dssp CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCS
T ss_pred CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHH
Confidence 444566798886678899999999999999975 3564 365555554433
No 20
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.95 E-value=8.4 Score=28.00 Aligned_cols=33 Identities=24% Similarity=0.664 Sum_probs=26.5
Q ss_pred CCccCcccCCCCcEEEeeCCCcccchhhhc-cccc
Q 016775 13 MLALCDFCNSKLAVLYCTADSAKLCLFCDQ-QIHS 46 (383)
Q Consensus 13 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~VHs 46 (383)
....|..-+ .+-.+||..|...+|..|-. .-|.
T Consensus 13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~ 46 (59)
T 2yrg_A 13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR 46 (59)
T ss_dssp CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT
T ss_pred cCccChhhC-ceeeeecCCCCcEEecccCCCCcCC
Confidence 346788887 57889999999999999986 4453
No 21
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.99 E-value=6.4 Score=29.54 Aligned_cols=48 Identities=33% Similarity=0.613 Sum_probs=31.4
Q ss_pred hcccccccCCCCCCCe---eEEecCCCc-cccCccCCCCCCCCCCCCCCceeee
Q 016775 53 RHLRSQICDNCRAEPV---SVRCCTENL-MLCQDCDWDSHYNSSVSSVHERSSV 102 (383)
Q Consensus 53 RH~Rv~LCd~C~~~pA---sv~C~~d~a-~LC~~CD~~~H~anslas~H~R~pv 102 (383)
.|. ..|+.|...|. .+.|..|.- -||+.|-+...........|.-+.+
T Consensus 9 ~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~ 60 (63)
T 2e5r_A 9 FHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEY 60 (63)
T ss_dssp CSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEE
T ss_pred eeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEE
Confidence 455 58999998874 588988855 5999997654322223344654443
No 22
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=52.41 E-value=12 Score=28.14 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCCCccCcccCCCCcEEEeeCCCcccchhhhccccccc---hhhhhcccccccCCCCCC
Q 016775 11 SSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSAN---ALSLRHLRSQICDNCRAE 66 (383)
Q Consensus 11 ~~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~VHsaN---~L~~RH~Rv~LCd~C~~~ 66 (383)
......|..|+.. +...+|..|++..|..= .|...-...+.|..|...
T Consensus 9 ~~~~~~C~vC~~~--------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDG--------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCC--------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCC--------CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3344579999863 45777888999999741 233333344677777643
No 23
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=50.86 E-value=10 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.502 Sum_probs=26.2
Q ss_pred CCccCcccCCCCcEEEeeCCCcccchhhh-cccccc
Q 016775 13 MLALCDFCNSKLAVLYCTADSAKLCLFCD-QQIHSA 47 (383)
Q Consensus 13 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD-~~VHsa 47 (383)
....|..=...+-.+||..|...+|..|- ..-|..
T Consensus 5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred cCCcCCCCCCccccEEcCCCCeeEcccccCCCcCCC
Confidence 34567766656688999999999999996 345543
No 24
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.20 E-value=9.1 Score=27.65 Aligned_cols=34 Identities=21% Similarity=0.630 Sum_probs=26.9
Q ss_pred CCCccCcccCCCCcEEEeeCCCcccchhhhc-cccc
Q 016775 12 SMLALCDFCNSKLAVLYCTADSAKLCLFCDQ-QIHS 46 (383)
Q Consensus 12 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~VHs 46 (383)
.....|..-+ ++-.+||..|.+.+|..|.. .-|.
T Consensus 16 ~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 16 TDQGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp CTTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cccCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 3456788886 68899999999999999986 3443
No 25
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=49.90 E-value=18 Score=27.52 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=33.9
Q ss_pred CCccCcccCCCCcEEEeeCCCcccchhhhc-cccccchhhhhcccccccCCCC
Q 016775 13 MLALCDFCNSKLAVLYCTADSAKLCLFCDQ-QIHSANALSLRHLRSQICDNCR 64 (383)
Q Consensus 13 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~VHsaN~L~~RH~Rv~LCd~C~ 64 (383)
....|..-...+-.+||..|...+|..|-. .-|. .|.-+++-+...
T Consensus 17 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~ 63 (84)
T 2dja_A 17 RGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFE 63 (84)
T ss_dssp SCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCC
T ss_pred CCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHH
Confidence 445788886678899999999999999986 5553 365555554443
No 26
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=48.92 E-value=7.1 Score=26.02 Aligned_cols=31 Identities=26% Similarity=0.618 Sum_probs=24.7
Q ss_pred ccCcccCCCCcEEEeeCCCcccchhhhc-cccc
Q 016775 15 ALCDFCNSKLAVLYCTADSAKLCLFCDQ-QIHS 46 (383)
Q Consensus 15 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~VHs 46 (383)
..|..-+ .+-.+||..|.+.+|..|-. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 4577776 57889999999999999976 4454
No 27
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=47.03 E-value=5.4 Score=33.48 Aligned_cols=74 Identities=19% Similarity=0.426 Sum_probs=46.0
Q ss_pred CCCccCcccCCCCcEEEeeCCC-cccchhhh--ccccccchhhhhc-cc-------ccccCCCCCCCeeEEec-CCCccc
Q 016775 12 SMLALCDFCNSKLAVLYCTADS-AKLCLFCD--QQIHSANALSLRH-LR-------SQICDNCRAEPVSVRCC-TENLML 79 (383)
Q Consensus 12 ~~~~~Cd~C~~~~A~vyC~aD~-A~LC~~CD--~~VHsaN~L~~RH-~R-------v~LCd~C~~~pAsv~C~-~d~a~L 79 (383)
...+.|..|+.....++=+.+. -.||-.|. .+.|..|.-..+. .| ...|..|.......|-. .+...|
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~l 82 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPV 82 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEE
T ss_pred CCCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCc
Confidence 3467899999877777777654 47999999 4455554422111 11 24789998876555443 333578
Q ss_pred cCccCC
Q 016775 80 CQDCDW 85 (383)
Q Consensus 80 C~~CD~ 85 (383)
|..|-.
T Consensus 83 CNaCgl 88 (115)
T 4hc9_A 83 CNACGL 88 (115)
T ss_dssp CHHHHH
T ss_pred chHHHH
Confidence 888863
No 28
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.35 E-value=5.5 Score=29.89 Aligned_cols=33 Identities=27% Similarity=0.661 Sum_probs=26.0
Q ss_pred ccCcccCCCCc---EEEeeCCCcccchhhhcccccc
Q 016775 15 ALCDFCNSKLA---VLYCTADSAKLCLFCDQQIHSA 47 (383)
Q Consensus 15 ~~Cd~C~~~~A---~vyC~aD~A~LC~~CD~~VHsa 47 (383)
..|-.|+..-. +.-|......+|.+||.-||..
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 45888887542 3449999999999999999964
No 29
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=41.81 E-value=15 Score=25.30 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=27.7
Q ss_pred CCCccCcccCCCCcEEEeeCCCcccchhhhccccc
Q 016775 12 SMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHS 46 (383)
Q Consensus 12 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~VHs 46 (383)
.....|..-...+-.+||..|...+|..|-..-|.
T Consensus 4 ~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~ 38 (50)
T 2yvr_A 4 ERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK 38 (50)
T ss_dssp CCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT
T ss_pred cCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC
Confidence 34567888855678999999999999999765553
No 30
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=41.19 E-value=19 Score=29.80 Aligned_cols=69 Identities=20% Similarity=0.347 Sum_probs=41.7
Q ss_pred CCCCCCCCCccCcccCCCCcEEEeeCCCcccch--hhhccccccchhh--hhcccccc-----cCCCCCCCeeEEecCCC
Q 016775 6 KLSPGSSMLALCDFCNSKLAVLYCTADSAKLCL--FCDQQIHSANALS--LRHLRSQI-----CDNCRAEPVSVRCCTEN 76 (383)
Q Consensus 6 ~l~~~~~~~~~Cd~C~~~~A~vyC~aD~A~LC~--~CD~~VHsaN~L~--~RH~Rv~L-----Cd~C~~~pAsv~C~~d~ 76 (383)
+-+.+......|..|+..- ...+|. .|++-.|.. =|- ..-.-.+. |..|+.. +.++|..|.
T Consensus 7 ~~~~~~~~~~~C~~C~~~G--------~ll~CD~~~Cp~~fH~~-Cl~L~~~P~g~W~Cp~c~C~~C~k~-~~~~C~~Cp 76 (107)
T 4gne_A 7 KTEPKQMHEDYCFQCGDGG--------ELVMCDKKDCPKAYHLL-CLNLTQPPYGKWECPWHQCDECSSA-AVSFCEFCP 76 (107)
T ss_dssp ---CCCSSCSSCTTTCCCS--------EEEECCSTTCCCEECTG-GGTCSSCCSSCCCCGGGBCTTTCSB-CCEECSSSS
T ss_pred cCCCcCCCCCCCCcCCCCC--------cEeEECCCCCCcccccc-cCcCCcCCCCCEECCCCCCCcCCCC-CCcCcCCCC
Confidence 3344555667899999533 355566 788877764 222 11111234 4556554 568999999
Q ss_pred ccccCccC
Q 016775 77 LMLCQDCD 84 (383)
Q Consensus 77 a~LC~~CD 84 (383)
..+|..|-
T Consensus 77 ~sfC~~c~ 84 (107)
T 4gne_A 77 HSFCKDHE 84 (107)
T ss_dssp CEECTTTC
T ss_pred cchhhhcc
Confidence 98888885
No 31
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.72 E-value=27 Score=28.89 Aligned_cols=43 Identities=23% Similarity=0.476 Sum_probs=26.8
Q ss_pred CCCCccCcccCCCCcEEEeeCCCcccchhhhccccccchhhhhcccccccCCCCCCC
Q 016775 11 SSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEP 67 (383)
Q Consensus 11 ~~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~VHsaN~L~~RH~Rv~LCd~C~~~p 67 (383)
+.|...|..|+.+.- + .+..+.|..|+..+ .+..+|+.|+..-
T Consensus 29 ~~M~~~CP~Cq~eL~--~--~g~~~hC~~C~~~f----------~~~a~CPdC~q~L 71 (101)
T 2jne_A 29 SHMELHCPQCQHVLD--Q--DNGHARCRSCGEFI----------EMKALCPDCHQPL 71 (101)
T ss_dssp --CCCBCSSSCSBEE--E--ETTEEEETTTCCEE----------EEEEECTTTCSBC
T ss_pred ccccccCccCCCcce--e--cCCEEECccccchh----------hccccCcchhhHH
Confidence 347788999986432 2 24455588888732 3456788888763
No 32
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=32.46 E-value=45 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.508 Sum_probs=21.2
Q ss_pred CCCccCcccCCCCcEEEeeCCCcccchhhhcccccc
Q 016775 12 SMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSA 47 (383)
Q Consensus 12 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~VHsa 47 (383)
.....|..|+. .+.-.+|..|++..|..
T Consensus 7 ~~~~~C~vC~~--------~g~ll~Cd~C~~~fH~~ 34 (61)
T 1mm2_A 7 HHMEFCRVCKD--------GGELLCCDTCPSSYHIH 34 (61)
T ss_dssp SSCSSCTTTCC--------CSSCBCCSSSCCCBCSS
T ss_pred CCCCcCCCCCC--------CCCEEEcCCCCHHHccc
Confidence 34567999986 35678888999988874
No 33
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.69 E-value=23 Score=27.34 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=36.1
Q ss_pred cccccCCCCCCCeeEEecCC-CccccCccCCCCCCCCCCCCCCceeeec
Q 016775 56 RSQICDNCRAEPVSVRCCTE-NLMLCQDCDWDSHYNSSVSSVHERSSVE 103 (383)
Q Consensus 56 Rv~LCd~C~~~pAsv~C~~d-~a~LC~~CD~~~H~anslas~H~R~pv~ 103 (383)
-.+.|-.|... |+++|..| .-..|..|=+..|.. ..-..|+-++..
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPYH 53 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECCC
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeecc
Confidence 34789999987 99999999 668999998888853 345678877753
No 34
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=30.12 E-value=29 Score=25.71 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=26.7
Q ss_pred CCccCcccCCCCcEEEeeCCCcccchhhhccccc
Q 016775 13 MLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHS 46 (383)
Q Consensus 13 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~VHs 46 (383)
....|..-+ .+-.+||..|...+|..|-..-|.
T Consensus 17 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~ 49 (72)
T 2csv_A 17 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK 49 (72)
T ss_dssp SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS
T ss_pred ccCcCcccC-CceEEEeCCCCeEEccccCCCCCC
Confidence 346788885 688999999999999999765453
No 35
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.94 E-value=94 Score=22.78 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=34.1
Q ss_pred ccCCCCCCCCCccCcccCCCCcEEEeeCCCcc-cchhhhccccccchhhhhcccccccCCCCCC
Q 016775 4 SFKLSPGSSMLALCDFCNSKLAVLYCTADSAK-LCLFCDQQIHSANALSLRHLRSQICDNCRAE 66 (383)
Q Consensus 4 ~~~l~~~~~~~~~Cd~C~~~~A~vyC~aD~A~-LC~~CD~~VHsaN~L~~RH~Rv~LCd~C~~~ 66 (383)
+.+.+........|-.|...++.+.-....-. +|..|-.. ...|+.|...
T Consensus 5 s~e~e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------------~~~CP~CR~~ 55 (68)
T 2ea5_A 5 SSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------------FQQCPMCRQF 55 (68)
T ss_dssp CCCCCCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------------CSSCTTTCCC
T ss_pred cccccccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------------CCCCCCCCcc
Confidence 34566666677899999887766555444444 89999762 2467777764
No 36
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=25.48 E-value=53 Score=28.45 Aligned_cols=78 Identities=17% Similarity=0.336 Sum_probs=40.0
Q ss_pred CCCCCCCCCccCcccCCCCc-----EEEeeCC-CcccchhhhccccccchhhhhcccccccCCCCCCCeeEEecCCCccc
Q 016775 6 KLSPGSSMLALCDFCNSKLA-----VLYCTAD-SAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLML 79 (383)
Q Consensus 6 ~l~~~~~~~~~Cd~C~~~~A-----~vyC~aD-~A~LC~~CD~~VHsaN~L~~RH~Rv~LCd~C~~~pAsv~C~~d~a~L 79 (383)
+...+-.....|-.|+.... .++.+.- ...+|..|-...+..+.....-.---.|..|..---.+-|.+|...+
T Consensus 6 ~~~~~~~~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG~LlcCD~Cpr~F 85 (142)
T 2lbm_A 6 KRGDGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAF 85 (142)
T ss_dssp CSSSSCCCCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCCSSEEECSSSCCEE
T ss_pred ccccCCcCCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCCCcEEeCCCCCCee
Confidence 33444445567777776542 3555532 35566666665555432211111113566666555555555555555
Q ss_pred cCcc
Q 016775 80 CQDC 83 (383)
Q Consensus 80 C~~C 83 (383)
|..|
T Consensus 86 h~~C 89 (142)
T 2lbm_A 86 CKKC 89 (142)
T ss_dssp EHHH
T ss_pred eHhh
Confidence 5555
No 37
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.14 E-value=1e+02 Score=29.78 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=40.8
Q ss_pred CCCccCcccCCCCcEEEee----CCC--cccchhhhccccccchhhhhcccccccCCCCCCCeeEEecCC----------
Q 016775 12 SMLALCDFCNSKLAVLYCT----ADS--AKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTE---------- 75 (383)
Q Consensus 12 ~~~~~Cd~C~~~~A~vyC~----aD~--A~LC~~CD~~VHsaN~L~~RH~Rv~LCd~C~~~pAsv~C~~d---------- 75 (383)
.....|-.||+.|..-+-+ .+. -..|.-|...-|. ....|..|+.....-|-..+
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~---------~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~ 250 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY---------VRIKCSHCEESKHLAYLSLEHDGQPAEKAV 250 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC---------CTTSCSSSCCCSCCEEECCCC-CCCSTTCS
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee---------cCcCCcCCCCCCCeeEEEecCccccCCCcc
Confidence 4567999999988443333 233 3568889876543 34589999986544444322
Q ss_pred -CccccCccC
Q 016775 76 -NLMLCQDCD 84 (383)
Q Consensus 76 -~a~LC~~CD 84 (383)
.+-.|..|.
T Consensus 251 ~r~e~C~~C~ 260 (309)
T 2fiy_A 251 LRAETCPSCQ 260 (309)
T ss_dssp EEEEEETTTT
T ss_pred eEEEEccccc
Confidence 256788884
No 38
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.56 E-value=45 Score=23.09 Aligned_cols=45 Identities=27% Similarity=0.447 Sum_probs=27.0
Q ss_pred cCcccCCCCcEEEeeCCCcccchhhhcccccc--c-hhhhhcccccccCCCCC
Q 016775 16 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSA--N-ALSLRHLRSQICDNCRA 65 (383)
Q Consensus 16 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~VHsa--N-~L~~RH~Rv~LCd~C~~ 65 (383)
.|..|+... ..+.-.+|..|++-.|.. + .|...-...+.|..|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888642 234677888999988874 1 13222233456666643
No 39
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.05 E-value=44 Score=24.75 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=21.6
Q ss_pred ccccCCCCCCCeeEEecCCCccccC
Q 016775 57 SQICDNCRAEPVSVRCCTENLMLCQ 81 (383)
Q Consensus 57 v~LCd~C~~~pAsv~C~~d~a~LC~ 81 (383)
..+|..|.. ++.+.|..|.+..|.
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESS
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeC
Confidence 347999999 999999999999987
No 40
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.72 E-value=56 Score=25.17 Aligned_cols=49 Identities=31% Similarity=0.400 Sum_probs=38.1
Q ss_pred CCCCCCccCcccCCCCcEEEeeCC-Ccccchhhhccccccchhhhhcccccc
Q 016775 9 PGSSMLALCDFCNSKLAVLYCTAD-SAKLCLFCDQQIHSANALSLRHLRSQI 59 (383)
Q Consensus 9 ~~~~~~~~Cd~C~~~~A~vyC~aD-~A~LC~~CD~~VHsaN~L~~RH~Rv~L 59 (383)
+..+..+.|-.|.. -|+|-|... .-.+|..|=+..|.. .=.+.|.-++.
T Consensus 3 ~~~ee~pWC~ICne-DAtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y 52 (67)
T 2d8v_A 3 SGSSGLPWCCICNE-DATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPY 52 (67)
T ss_dssp SSCCCCSSCTTTCS-CCCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECC
T ss_pred CcCcCCCeeEEeCC-CCeEEecCCCCceehHHHHHHHccc-hhhhccceeec
Confidence 45567789999997 599999975 789999999999963 34566766544
Done!