BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016776
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 161/334 (48%), Gaps = 29/334 (8%)
Query: 40 IPKQFIWPDDEKPCVNAPEL--------QVPLIDLGGFLSDDPVAAKEASRLVGEACRKH 91
IPK++I P +E +N L QVP IDL SDD + + +A
Sbjct: 18 IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 77
Query: 92 GFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRAR--RKLGEHCGYASSFTGRFSSKL 149
G ++NHG+ + L+ + + FF L + EK++ + G+ GY S S +L
Sbjct: 78 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 150 PWKETL-SFRYSAEK---SLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIME 205
W++ Y EK S+ DY+ T +Y + + L+ + +
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEAT------------SEYAKCLRLLATKVFK 185
Query: 206 LLAISLGVDRAHFKE---FFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQ 262
L++ LG++ ++ EE M++NYYP C +PEL LG H D ++LT + +
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245
Query: 263 VGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFL 322
V GLQ+F E +W + ++ V++IGDT LSNG+YKS LHR +VN + R S A F
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 323 CPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLE 356
P DK+V P + + SP +P T+ +E
Sbjct: 306 EPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 161/334 (48%), Gaps = 29/334 (8%)
Query: 40 IPKQFIWPDDEKPCVNAPEL--------QVPLIDLGGFLSDDPVAAKEASRLVGEACRKH 91
IPK++I P +E +N L QVP IDL SDD + + +A
Sbjct: 17 IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 76
Query: 92 GFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRAR--RKLGEHCGYASSFTGRFSSKL 149
G ++NHG+ + L+ + + FF L + EK++ + G+ GY S S +L
Sbjct: 77 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 136
Query: 150 PWKETL-SFRYSAEK---SLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIME 205
W++ Y EK S+ DY+ T +Y + + L+ + +
Sbjct: 137 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEAT------------SEYAKCLRLLATKVFK 184
Query: 206 LLAISLGVDRAHFKE---FFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQ 262
L++ LG++ ++ EE M++NYYP C +PEL LG H D ++LT + +
Sbjct: 185 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 244
Query: 263 VGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFL 322
V GLQ+F E +W + ++ V++IGDT LSNG+YKS LHR +VN + R S A F
Sbjct: 245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 304
Query: 323 CPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLE 356
P DK+V P + + SP +P T+ +E
Sbjct: 305 EPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 338
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 158/334 (47%), Gaps = 29/334 (8%)
Query: 40 IPKQFIWPDDEKPCVNAPEL--------QVPLIDLGGFLSDDPVAAKEASRLVGEACRKH 91
IPK++I P +E +N L QVP IDL SDD + + +A
Sbjct: 18 IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 77
Query: 92 GFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRAR--RKLGEHCGYASSFTGRFSSKL 149
G ++NHG+ + L + + FF L + EK++ + G+ GY S S +L
Sbjct: 78 GVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 150 PWKETL-SFRYSAEK---SLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIME 205
W++ Y EK S+ DY+ T +Y + + L+ + +
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEAT------------SEYAKCLRLLATKVFK 185
Query: 206 LLAISLGVDRAHFKEFFEENDSIM---RLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQ 262
L++ LG++ ++ + ++ ++NYYP C +PEL LG H D ++LT + +
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX 245
Query: 263 VGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFL 322
V GLQ+F E +W + ++ V +IGDT LSNG+YKS LHR +VN + R S A F
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 323 CPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLE 356
P DK+V P + SP +P T+ +E
Sbjct: 306 EPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIE 339
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 132/274 (48%), Gaps = 21/274 (7%)
Query: 84 VGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASSFTG 143
+ +AC GFF +VNHG+ + + ++ ++ + G + T
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVT- 82
Query: 144 RFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGI 203
W+ T ++ +SN ++ + D +++ V +D+ + + +L+ +
Sbjct: 83 ----DXDWESTFFLKHL---PISN-------ISEVPDLDEEYREVXRDFAKRLEKLAEEL 128
Query: 204 MELLAISLGVDRAHFKEFFEENDS---IMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQ 260
++LL +LG+++ + K F + +++ YPPC KP+L G H D + +L Q
Sbjct: 129 LDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQ 188
Query: 261 -DQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLA 319
D+V GLQ+ + +W + P + VVN+GD ++NG+YKS HR + R SLA
Sbjct: 189 DDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLA 248
Query: 320 FFLCPKNDKVVSPPSELVDTYS--SPRIYPDFTW 351
F P +D V+ P LV+ + + ++YP F +
Sbjct: 249 SFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVF 282
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 130/307 (42%), Gaps = 54/307 (17%)
Query: 61 VPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELP 120
VP ID+ DD A ++ + A R GFF VNHG++ ++ + H P
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEF-HMSITP 67
Query: 121 LNEKQRARRKLG-EH-----CGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDY- 173
+ A R EH GY S G+ K SF Y L+ N D+
Sbjct: 68 EEKWDLAIRAYNKEHQDQVRAGYYLSIPGK-------KAVESFCY-----LNPNFTPDHP 115
Query: 174 ---------LLNTMGDEFKQFGRVYQDYCE----SMSRLSLGIMELLAISLGVDRAHFKE 220
+N DE K G +QD+ E + LS +++ A++LG + F
Sbjct: 116 RIQAKTPTHEVNVWPDETKHPG--FQDFAEQYYWDVFGLSSALLKGYALALGKEENFFAR 173
Query: 221 FFEENDSI-----MRLNYYPPCQKPELTLGTGP---------HCDPTSLTILHQDQVGGL 266
F+ +D++ +R Y P PE + T H D + +T+L+Q V L
Sbjct: 174 HFKPDDTLASVVLIRYPYLDPY--PEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNL 231
Query: 267 QVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAV-VNSQTTRKSLAFFLCPK 325
QV ++ I + +++N G L+N YK+ +HR VN++ R+SL FF+
Sbjct: 232 QVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLG 289
Query: 326 NDKVVSP 332
D V+ P
Sbjct: 290 YDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 130/307 (42%), Gaps = 54/307 (17%)
Query: 61 VPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELP 120
VP ID+ DD A ++ + A R GFF VNHG++ ++ + H P
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEF-HMSITP 67
Query: 121 LNEKQRARRKLG-EH-----CGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDY- 173
+ A R EH GY S G+ K SF Y L+ N D+
Sbjct: 68 EEKWDLAIRAYNKEHQDQVRAGYYLSIPGK-------KAVESFCY-----LNPNFTPDHP 115
Query: 174 ---------LLNTMGDEFKQFGRVYQDYCE----SMSRLSLGIMELLAISLGVDRAHFKE 220
+N DE K G +QD+ E + LS +++ A++LG + F
Sbjct: 116 RIQAKTPTHEVNVWPDETKHPG--FQDFAEQYYWDVFGLSSALLKGYALALGKEENFFAR 173
Query: 221 FFEENDSI-----MRLNYYPPCQKPELTLGTGP---------HCDPTSLTILHQDQVGGL 266
F+ +D++ +R Y P PE + T H D + +T+L+Q V L
Sbjct: 174 HFKPDDTLASVVLIRYPYLDPY--PEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNL 231
Query: 267 QVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAV-VNSQTTRKSLAFFLCPK 325
QV ++ I + +++N G L+N YK+ +HR VN++ R+SL FF+
Sbjct: 232 QVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLG 289
Query: 326 NDKVVSP 332
D V+ P
Sbjct: 290 YDSVIDP 296
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 115/262 (43%), Gaps = 13/262 (4%)
Query: 73 DPVA----AKEASRL---VGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQ 125
DPV+ AK+ +R +G + ++GF ++ ++ +D + I A FF LP+ K+
Sbjct: 8 DPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKK 67
Query: 126 RARRKLGEHCGYA--SSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFK 183
+ G GY T + + KE + + + N E
Sbjct: 68 QYAGVKGGARGYIPFGVETAKGADHYDLKEF--WHXGRDLPPGHRFRAHXADNVWPAEIP 125
Query: 184 QFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELT 243
F S+ ++E +A L ++R FK ++ +S++RL +YPP K
Sbjct: 126 AFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATG 185
Query: 244 LGTGPHCDPTSLTILHQDQVGGLQVF-VENEWRSISPNFEAFVVNIGDTFMALSNGRYKS 302
+ G H D ++T+L + GGL+V + +W I+P V+NIGD L+N S
Sbjct: 186 VRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPS 245
Query: 303 CLHRAVVNSQTTRKSLAFFLCP 324
+HR VVN R+ + + P
Sbjct: 246 TVHR-VVNPPPERRGVPRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 33/270 (12%)
Query: 76 AAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHC 135
AA A R V E+ R+ GF ++ NH +D L+ + FF + R+ H
Sbjct: 11 AADSAKRFV-ESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRET--HD 67
Query: 136 GYASSFTGRFSSKLPWKETLSFRY-----SAEKSLSNNIVEDY-LLNTMGDEFKQFGRVY 189
G+ + + K+ + + SL NI+ Y NT+ E ++ Y
Sbjct: 68 GFFPASISETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETY 127
Query: 190 QDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPEL--TLGTG 247
E ++ S+ + E +A S + +++R+ +YPP E +
Sbjct: 128 SP-DEIKAKFSIPLPEXIANS--------------HKTLLRILHYPPXTGDEEXGAIRAA 172
Query: 248 PHCDPTSLTILHQDQVGGLQVFVEN-EWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHR 306
H D +T+L GLQV ++ W + +F ++NIGD S+G + S HR
Sbjct: 173 AHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHR 232
Query: 307 AVVNSQTT-----RKSLAFFLCPKNDKVVS 331
V+N + T R SL FL P V+S
Sbjct: 233 -VINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|2AO9|A Chain A, Structural Genomics, The Crystal Structure Of A Phage
Protein (phbc6a51) From Bacillus Cereus Atcc 14579
pdb|2AO9|B Chain B, Structural Genomics, The Crystal Structure Of A Phage
Protein (phbc6a51) From Bacillus Cereus Atcc 14579
pdb|2AO9|C Chain C, Structural Genomics, The Crystal Structure Of A Phage
Protein (phbc6a51) From Bacillus Cereus Atcc 14579
pdb|2AO9|D Chain D, Structural Genomics, The Crystal Structure Of A Phage
Protein (phbc6a51) From Bacillus Cereus Atcc 14579
pdb|2AO9|E Chain E, Structural Genomics, The Crystal Structure Of A Phage
Protein (phbc6a51) From Bacillus Cereus Atcc 14579
pdb|2AO9|F Chain F, Structural Genomics, The Crystal Structure Of A Phage
Protein (phbc6a51) From Bacillus Cereus Atcc 14579
pdb|2AO9|G Chain G, Structural Genomics, The Crystal Structure Of A Phage
Protein (phbc6a51) From Bacillus Cereus Atcc 14579
pdb|2AO9|H Chain H, Structural Genomics, The Crystal Structure Of A Phage
Protein (phbc6a51) From Bacillus Cereus Atcc 14579
pdb|2AO9|I Chain I, Structural Genomics, The Crystal Structure Of A Phage
Protein (phbc6a51) From Bacillus Cereus Atcc 14579
Length = 155
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 273 EWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFL 322
EWR+ + +F AF + D+F+A + S L + ++ Q + K++ ++
Sbjct: 67 EWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYM 116
>pdb|3PTY|A Chain A, Crystal Structure Of The C-Terminal Extracellular Domain
Of Mycobacterium Tuberculosis Embc
Length = 406
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 201 LGIMELLAISLGVDRAHFKEFFEENDSIMRLN-YYPPCQKPELTLGT 246
LGI ELL + V ++F + ++ RL YYP Q +L LGT
Sbjct: 315 LGITELLMRATTVASYLKDDWFRDWGALQRLTPYYPDAQPADLNLGT 361
>pdb|3Q8D|A Chain A, E. Coli Reco Complex With Ssb C-terminus
pdb|3Q8D|B Chain B, E. Coli Reco Complex With Ssb C-terminus
Length = 242
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 134 HCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVED 172
H GY +FT S P +T+++RY EK ++V D
Sbjct: 141 HLGYGVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVID 179
>pdb|1WY1|A Chain A, Crystal Structure Of The Ph0671 Protein From Pyrococcus
Horikoshii Ot3
pdb|1WY1|B Chain B, Crystal Structure Of The Ph0671 Protein From Pyrococcus
Horikoshii Ot3
pdb|1WY1|C Chain C, Crystal Structure Of The Ph0671 Protein From Pyrococcus
Horikoshii Ot3
Length = 172
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 74 PVAAKEASRLVG-EACRKHGFFLVVNHGVD--SSLIADAHRYMDHFFELPLNEKQRARRK 130
V K ++RL G E K + N +D +S I +A Y+D + L E Q K
Sbjct: 6 KVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYK 65
Query: 131 LGEHCGYASSFTGRFSSKLPWKETLSFRY 159
+ G G ++ W E L RY
Sbjct: 66 IMGEIGSKGKIEGISEERIKWLEGLISRY 94
>pdb|2WZG|A Chain A, Legionella Glucosyltransferase (Lgt1) Crystal Structure
pdb|3JT1|A Chain A, Legionella Pneumophila Glucosyltransferase Lgt1, Udp-bound
Form
Length = 525
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 57 PELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHR 111
P ++ L +LG + +P AA + R + E + GF++ ++ VDSS I + H+
Sbjct: 210 PLIKAELANLG--MGGNPAAASDLCRWIPELFNE-GFYVDIDLPVDSSKIVEGHQ 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,781,020
Number of Sequences: 62578
Number of extensions: 489638
Number of successful extensions: 956
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 16
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)