Query 016781
Match_columns 383
No_of_seqs 165 out of 1695
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:45:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02505 omega-6 fatty acid de 100.0 7.4E-77 1.6E-81 570.9 38.4 381 1-383 1-381 (381)
2 PLN02498 omega-3 fatty acid de 100.0 1.4E-66 3E-71 502.0 34.2 338 23-382 94-440 (450)
3 PLN02598 omega-6 fatty acid de 100.0 3.9E-57 8.5E-62 439.7 32.6 322 23-369 69-394 (421)
4 cd03507 Delta12-FADS-like The 100.0 4.8E-40 1E-44 297.7 19.1 220 47-329 1-222 (222)
5 PLN03198 delta6-acyl-lipid des 100.0 6.2E-39 1.3E-43 321.2 23.3 314 32-366 188-515 (526)
6 PLN03199 delta6-acyl-lipid des 100.0 2E-38 4.4E-43 317.1 22.3 323 32-366 113-471 (485)
7 COG3239 DesA Fatty acid desatu 100.0 1.4E-37 3E-42 298.1 24.4 278 30-343 15-299 (343)
8 cd03511 Rhizopine-oxygenase-li 100.0 1E-36 2.2E-41 287.3 27.6 269 32-343 2-276 (285)
9 cd03506 Delta6-FADS-like The D 100.0 6.9E-37 1.5E-41 274.5 15.3 197 89-343 3-202 (204)
10 cd03508 Delta4-sphingolipid-FA 100.0 6.9E-32 1.5E-36 252.0 24.7 247 44-342 11-260 (289)
11 cd03514 CrtR_beta-carotene-hyd 100.0 4.4E-32 9.6E-37 243.0 19.2 182 83-342 21-204 (207)
12 cd03513 CrtW_beta-carotene-ket 100.0 6.3E-31 1.4E-35 236.5 19.8 191 82-332 28-224 (225)
13 PLN02579 sphingolipid delta-4 100.0 3.3E-30 7.1E-35 243.6 24.0 233 82-359 69-303 (323)
14 cd03509 DesA_FADS-like Fatty a 100.0 2.2E-29 4.9E-34 235.7 26.9 220 88-342 29-259 (288)
15 PF00487 FA_desaturase: Fatty 100.0 3.9E-31 8.4E-36 243.4 14.0 248 83-346 3-253 (257)
16 KOG4232 Delta 6-fatty acid des 100.0 4.2E-30 9.2E-35 242.0 21.0 298 31-365 99-419 (430)
17 cd03510 Rhizobitoxine-FADS-lik 100.0 4.3E-30 9.4E-35 224.0 14.7 169 60-336 2-175 (175)
18 KOG2987 Fatty acid desaturase 99.9 3.5E-22 7.6E-27 175.5 15.0 254 31-337 21-281 (324)
19 cd03512 Alkane-hydroxylase Alk 99.8 3.1E-18 6.6E-23 162.6 19.3 217 81-335 67-286 (314)
20 cd01060 Membrane-FADS-like The 99.7 8.5E-18 1.8E-22 138.0 8.4 59 99-157 14-72 (122)
21 PF11960 DUF3474: Domain of un 98.6 3.9E-08 8.5E-13 79.3 5.2 47 20-66 88-134 (136)
22 COG1398 OLE1 Fatty-acid desatu 98.6 8.3E-07 1.8E-11 80.2 11.7 52 104-156 66-118 (289)
23 PLN02220 delta-9 acyl-lipid de 98.3 8.3E-05 1.8E-09 70.0 18.1 51 104-155 76-127 (299)
24 KOG1600 Fatty acid desaturase 97.3 0.0022 4.7E-08 59.7 10.6 49 107-156 91-139 (321)
25 cd03505 Delta9-FADS-like The D 97.2 0.007 1.5E-07 52.7 12.0 48 107-155 27-74 (178)
26 cd03508 Delta4-sphingolipid-FA 53.9 28 0.00062 32.8 5.5 14 313-326 99-112 (289)
27 PF13829 DUF4191: Domain of un 47.0 68 0.0015 29.0 6.5 57 32-96 9-65 (224)
28 COG3239 DesA Fatty acid desatu 43.6 71 0.0015 30.9 6.7 15 314-328 118-132 (343)
29 PLN02579 sphingolipid delta-4 38.9 60 0.0013 31.2 5.2 13 313-325 128-140 (323)
30 KOG4232 Delta 6-fatty acid des 38.6 1.4E+02 0.0031 29.6 7.7 65 256-324 144-208 (430)
31 cd03511 Rhizopine-oxygenase-li 38.2 96 0.0021 28.9 6.5 13 313-325 97-109 (285)
32 cd03507 Delta12-FADS-like The 34.0 2.5E+02 0.0053 25.2 8.2 13 313-325 86-98 (222)
33 PLN03199 delta6-acyl-lipid des 33.4 1.3E+02 0.0028 30.7 7.0 36 1-41 1-36 (485)
34 COG1398 OLE1 Fatty-acid desatu 31.2 44 0.00095 31.1 2.8 42 102-151 207-249 (289)
35 cd03509 DesA_FADS-like Fatty a 30.4 3.7E+02 0.008 25.3 9.0 16 139-154 230-245 (288)
36 PLN02505 omega-6 fatty acid de 25.8 2.1E+02 0.0046 28.2 6.7 38 90-127 259-296 (381)
37 PF06781 UPF0233: Uncharacteri 23.1 3.3E+02 0.0071 20.7 5.8 16 16-31 2-17 (87)
38 PF00487 FA_desaturase: Fatty 23.0 1.8E+02 0.0039 25.6 5.4 13 139-151 219-231 (257)
39 PLN03198 delta6-acyl-lipid des 22.8 2.3E+02 0.0049 29.3 6.5 14 313-326 290-303 (526)
40 PLN02598 omega-6 fatty acid de 21.0 2.8E+02 0.0061 27.7 6.6 12 314-325 179-190 (421)
41 cd03514 CrtR_beta-carotene-hyd 20.6 2.6E+02 0.0056 24.8 5.8 13 313-325 77-89 (207)
42 cd03510 Rhizobitoxine-FADS-lik 20.5 1.3E+02 0.0029 25.9 3.8 13 313-325 75-87 (175)
No 1
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=7.4e-77 Score=570.92 Aligned_cols=381 Identities=80% Similarity=1.444 Sum_probs=344.7
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCC
Q 016781 1 MGAGGRMAVPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHP 80 (383)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~ 80 (383)
||+||||.||....++++..+++.+.++|++|++|+|+++|++||++|++|++.++++|+++++++++++..+++.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~tl~~ir~aiP~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~ 80 (381)
T PLN02505 1 MGAGGRMSVPTSSKKGSASAVKRVPSSKPPFTLGDIKKAIPPHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGP 80 (381)
T ss_pred CCCCCcCCCCccccCccccccccCCCCCCCccHHHHHHhCCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 89999999999999999999999999999999999999999999999999999999999999998877665454445665
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCCcccc
Q 016781 81 LSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPK 160 (383)
Q Consensus 81 ~~~~~~~l~~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~ 160 (383)
+.+++|+++++++|+++.++++++|||+|+++|+++++|+++|.+++.+++.|++.||.+|+.||++||+.++|+++.|.
T Consensus 81 ~~~~l~~~~~~~~G~~~~~l~vl~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~P~ 160 (381)
T PLN02505 81 LSYVAWPLYWAAQGCVLTGVWVIAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPK 160 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCccccCc
Confidence 66778889999999999999999999999999999999999999999998999999999999999999999999999887
Q ss_pred hhhhHhHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 016781 161 QKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLY 240 (383)
Q Consensus 161 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (383)
++++.+...++.++|+.++...+++..+|||+|++.++.++.+.+...+++|.+++++++++.++.+++++++++.++++
T Consensus 161 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~ 240 (381)
T PLN02505 161 KKSALPWYSKYLNNPPGRLLHIVVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLY 240 (381)
T ss_pred CHHHHhHHHHHhcChHHHHHHHHHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 76654444455578888877767778899999999888876555556788888778888899999999998888877777
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccCCCCccHHhhhhhccCCCccchhHHhcccccchhhhhh
Q 016781 241 CLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHL 320 (383)
Q Consensus 241 ~~~~~~g~~~~l~~~l~P~l~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T~~~~~~~l~~l~~~i~nyH~eHHl 320 (383)
.++...|++.++.+|++|+++++.|+.+++|+||++|++|++++++||+.++|+.|+|+++++++++++||+++|+.||+
T Consensus 241 ~~~~~~G~~~~l~~y~vP~lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~tvdr~yg~~~~l~h~I~~~Hv~HHl 320 (381)
T PLN02505 241 RLAAAKGLAWVLCVYGVPLLIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHL 320 (381)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCCCcChhhccceeccCcchHHHHHHccCCcccchhhc
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999559999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcccccCCccHHHHHHHHhcccEEecCCCCCCCccEEEeecCC
Q 016781 321 FSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 383 (383)
Q Consensus 321 fP~iP~y~Lp~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
+|+||+|||+|+++.+|+.+++||++.+.++++++|+..++|+.||+|.| ++||++|+||.
T Consensus 321 ~srIP~Y~l~eA~~aik~~lg~~y~~~~~~~~~~l~~~~~~C~~v~~~~~--~~~v~~~~~~~ 381 (381)
T PLN02505 321 FSTMPHYHAMEATKAIKPILGEYYQFDGTPVYKALWREAKECIYVEPDEG--GKGVFWYNNKF 381 (381)
T ss_pred cCCCCCCCHHHHHHHHHHHhHHHhcCCCCcHHHHHHHHhcceEEeCcCCC--CCceEEEecCC
Confidence 99999999999999999999999998899999999999999999998876 48999999984
No 2
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=1.4e-66 Score=501.99 Aligned_cols=338 Identities=37% Similarity=0.731 Sum_probs=296.8
Q ss_pred CCCCCCCCCCHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHHHHHHHH
Q 016781 23 RVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWV 102 (383)
Q Consensus 23 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~ 102 (383)
+.+..+|++|++|||+++|++||++|++|++.++++|+++++++++++. +. .+|++|+++++++|+++.++++
T Consensus 94 ~~~~~~p~~tl~dir~aIP~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~-~~------~~w~~wpl~w~~~G~~~~gL~v 166 (450)
T PLN02498 94 FDPGAPPPFNLADIRAAIPKHCWVKNPWRSMSYVVRDVAVVFGLAAAAA-YF------NNWVVWPLYWFAQGTMFWALFV 166 (450)
T ss_pred cCCCCCCCCCHHHHHHhCCHHHcCCChHHHHHHHHHHHHHHHHHHHHHH-HH------hHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999887776654 32 1578899999999999999999
Q ss_pred HhhcccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCCcccchhhhHhHHHHHhcChhHHHHHH
Q 016781 103 VAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITL 182 (383)
Q Consensus 103 l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~p~~~~~~~ 182 (383)
++|||+|+++|+++++|+++|.+++.++++|+..||.+|+.||++||+.++||++.|.++++++.. . +..+++++
T Consensus 167 l~HDcgHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y~~l----~-~~~~~~~~ 241 (450)
T PLN02498 167 LGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKSL----D-KVTRTLRF 241 (450)
T ss_pred HHHhccccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHhc----c-ccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999877653221 1 12233322
Q ss_pred H-HHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016781 183 T-VTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLV 261 (383)
Q Consensus 183 ~-~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~l~ 261 (383)
. ....+|||+|++.+..++ ...+|+|.+++|.++|+.++++++++++++.++++.++...|++.++.+|++|+++
T Consensus 242 ~~~~~~~g~p~YL~~~~~g~----~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~~Y~vP~lv 317 (450)
T PLN02498 242 TLPFPMLAYPFYLWSRSPGK----KGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPIQMLKLYGIPYWI 317 (450)
T ss_pred HHHHHHHHHHHHHhhhccCC----cCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 123678999988777654 25788998888998999998889888887777777777788999999999999999
Q ss_pred HHHHHHHHHhhcCC--CCCCCccCCCCccHHhhhhhccCCCccchhHHhcccccchhhhhhcCCCCcccHHHHHHHHHhh
Q 016781 262 VNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPI 339 (383)
Q Consensus 262 ~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~~q~~T~~~~~~~l~~l~~~i~nyH~eHHlfP~iP~y~Lp~~~~~l~~~ 339 (383)
.++|+.+++|+||+ .+++|++++++||+.++|+.|+||+++|++++++|| ++|+.||+||+||+|||+|+++.+|+.
T Consensus 318 ~~~WL~~iTyLhHt~~~~~iP~y~~~eWs~~rGaL~TvDR~yg~i~~l~H~I-~tHV~HHlf~~IPhYhl~eAt~aiK~~ 396 (450)
T PLN02498 318 FVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPV 396 (450)
T ss_pred HHHHHHHhhhhcccCCCCCCCCCCCCCcchhhccceeecCcccchhhhhcCc-ccchhhhccCCCCCcCHHHHHHHHHHH
Confidence 99999999999998 688999999999999999999999999999999999 699999999999999999999999999
Q ss_pred hhcccccCCcc------HHHHHHHHhcccEEecCCCCCCCccEEEeecC
Q 016781 340 LGEYYQFDGTP------FYKAMWREAKECLYVEPDEGDQNKGVFWYRNK 382 (383)
Q Consensus 340 ~~~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (383)
+++||++...+ +++++|+..++|..||+| +||++|++.
T Consensus 397 lg~yy~e~~~~~~~p~~~~~~l~r~~~~c~~v~~~-----~~v~~y~~~ 440 (450)
T PLN02498 397 LGKYYREPKKSGPLPFHLLGSLIRSMKQDHYVSDT-----GDVVYYQTD 440 (450)
T ss_pred hHHheecCCCCCCchhHHHHHHHHHhcceEEEeCC-----CCEEEEecc
Confidence 99999888774 899999999999999977 799999974
No 3
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=3.9e-57 Score=439.74 Aligned_cols=322 Identities=25% Similarity=0.444 Sum_probs=265.0
Q ss_pred CCCCCCC-CCCHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHHHHHHH
Q 016781 23 RVPCSKP-PFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVW 101 (383)
Q Consensus 23 ~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~ 101 (383)
.-|+.+| ++|++||++++|++||++|++|++.+++.+++++++++++.. . .+|++++++++++|+++.+++
T Consensus 69 ~~~~~~~~~~tl~~i~~aiP~~~F~~s~~rs~~~l~~~i~~~~~~~~~~~-~-------~~w~~~~l~~~~~G~~~~~l~ 140 (421)
T PLN02598 69 QIGEPLPDNVTLKDVVKTLPKEVFEIDDFKAWKTVAITVTSYALGLAAIA-V-------APWYLLPLAWAWLGTAITGFF 140 (421)
T ss_pred hcCCcCCCCcCHHHHHHhCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH-H-------hHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 779999999999999999999999999999988755443221 1 246778888999999999999
Q ss_pred HHhhcccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCCcccchhhhHhHHHHHhcChhHHHHH
Q 016781 102 VVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVIT 181 (383)
Q Consensus 102 ~l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~p~~~~~~ 181 (383)
+++|||+|+++++++++|+++|.+++.++++|++.||.+|+.||++||+.++|||+.|.++++++ + ..++.++
T Consensus 141 vl~Hec~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~e~~---~--~~~~~r~-- 213 (421)
T PLN02598 141 VIGHDCGHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQPFRPHQFD---N--ADPLRKA-- 213 (421)
T ss_pred HHHHhccccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCCCcCCcCHHHHh---h--cCHHHHH--
Confidence 99999999999999999999999999999999999999999999999999999999988766521 1 2344443
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHH
Q 016781 182 LTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMI-YSLYCLVAAKGLVYVFCIYGGPLL 260 (383)
Q Consensus 182 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~l~~~l~P~l 260 (383)
+++..+| |+|++.+.... ...++++. .++++++.++.++.++++++. ++++.++..+|.+.++.+|++|++
T Consensus 214 -l~~~~~G-P~yl~~~~~~~----~~~hf~~~--~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~~~~~~ylvP~L 285 (421)
T PLN02598 214 -MMRAGMG-PLWWWASIGHW----LFWHFDLN--KFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWL 285 (421)
T ss_pred -HHHHhHh-HHHHHHhhhcc----eeeccCcc--cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456778 77777654321 23445553 256777777878877765543 333333445788888899999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCccCCCCccHHhhhhh-ccCCCcc-chhHHhcccccchhhhhhcCCCCcccHHHHHHHHHh
Q 016781 261 VVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALA-TVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKP 338 (383)
Q Consensus 261 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~-T~~~~~~-~l~~l~~~i~nyH~eHHlfP~iP~y~Lp~~~~~l~~ 338 (383)
+.+++++++++++|++|++|++++++|++.+.++. |++++++ |++++++|+ |||++||+||+||+|+||++++.+++
T Consensus 286 v~~~wl~~it~lhHt~p~ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnI-n~HV~HHLfP~IP~Y~lpea~~alk~ 364 (421)
T PLN02598 286 GYHFWMSTFTMVHHTAPHIPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDI-SVHIPHHISSKIPSYNLRKAHASLQE 364 (421)
T ss_pred HHHHHHHHHHHHhhcCCCCCccccccccHhhhhhcCceecCCcHHHHHHHcCC-ccchhhhcCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999998899999999987 8888875 789999999 89999999999999999999999999
Q ss_pred hhhcccccCCccHHHHHHHHhcccEEecCCC
Q 016781 339 ILGEYYQFDGTPFYKAMWREAKECLYVEPDE 369 (383)
Q Consensus 339 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 369 (383)
.++++|++. ...++++++..++|.+||+|.
T Consensus 365 ~~g~~y~~~-~~~~~~l~~~~~~C~~~d~~~ 394 (421)
T PLN02598 365 NWGKHLNKA-TFNWRLMKTILTQCHVYDKEK 394 (421)
T ss_pred HhccccccC-chhHHHHHHHhhheEEEcCCC
Confidence 999998875 446899999999999999773
No 4
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=100.00 E-value=4.8e-40 Score=297.74 Aligned_cols=220 Identities=46% Similarity=0.830 Sum_probs=172.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhcccccCcCCCchhhHHHHHHH
Q 016781 47 RSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLIL 126 (383)
Q Consensus 47 ~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~lg~l~ 126 (383)
||.++++.+++.|+++++++++++... .+|++++++++++|+.+.++++++|||+|++++|+|++|+++|.++
T Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~ 73 (222)
T cd03507 1 RSLFRSLSYLAPDILLLALLALAASLL-------LSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHIL 73 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHH
Confidence 578899999999999998877655311 2577888999999999999999999999999999999999999999
Q ss_pred HhhccCchHHhHHhhcccccCCCCCCCCCCcccchhhhHhHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 016781 127 HSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRF 206 (383)
Q Consensus 127 ~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 206 (383)
+.+++.|+..||..|+.||++||+.++|+|+.|..+.+. ..+...
T Consensus 74 ~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~~p~~~~~~-------~~~~~~---------------------------- 118 (222)
T cd03507 74 HSPLLVPYHSWRISHNRHHAHTGNLEGDEVWVPVTEEEY-------AELPKR---------------------------- 118 (222)
T ss_pred HHHHhCChHHHHHHHHHHHhccCCCCCCCcccCcCHHHh-------hccccc----------------------------
Confidence 999999999999999999999999999999977654321 000000
Q ss_pred ccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccCCCC
Q 016781 207 ACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSE 286 (383)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~l~~~~~~~~~~~~~H~~~~~~~~~~~~ 286 (383)
. +......-+.+..+...++. ..+ ++.+|++|+++.+++++++++++|++|++|++++++
T Consensus 119 -----------~---~y~~~~~~~~~~~~g~~~~~---~~~---~~~~~~ip~l~~~~~l~~~t~l~H~~~~~~~~~~~~ 178 (222)
T cd03507 119 -----------L---PYRLYRNPFLMLSLGWPYYL---LLN---VLLYYLIPYLVVNAWLVLITYLQHTFPDIPWYRADE 178 (222)
T ss_pred -----------c---hHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHhHHHHHHHHHHeeeEecCCCCCCCCcCccc
Confidence 0 00000010111111111111 111 667899999999999999999999999999998889
Q ss_pred ccHHhhhhh-ccCCCcc-chhHHhcccccchhhhhhcCCCCcccH
Q 016781 287 WDWFRGALA-TVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHA 329 (383)
Q Consensus 287 ~~~~~~q~~-T~~~~~~-~l~~l~~~i~nyH~eHHlfP~iP~y~L 329 (383)
|++.+.|+. |+|++++ |++++++|+ |||+|||+||+||+|+|
T Consensus 179 w~~~~~q~~~t~~~~~~~~~~~l~~~i-~~hv~HHlfP~iP~y~l 222 (222)
T cd03507 179 WNFAQAGLLGTVDRDYGGWLNWLTHII-GTHVAHHLFPRIPHYNL 222 (222)
T ss_pred cchhhhcceeeeeccccHHHHHHhcCC-CcccchhcCCCCCcCcC
Confidence 999888886 6777774 789999999 89999999999999986
No 5
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=6.2e-39 Score=321.19 Aligned_cols=314 Identities=14% Similarity=0.114 Sum_probs=207.3
Q ss_pred CHHHHHHhcC-CCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 016781 32 TLSQVKKAIP-PHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHH 110 (383)
Q Consensus 32 ~~~~l~~~l~-~~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hda~H~ 110 (383)
.++++++++. +++|++|+.+....++..++++++++++.. . .. .++..+++++++|+++.+++.++|||+|+
T Consensus 188 dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~-~---~~---~~~~~ll~a~llgl~~~q~g~l~HD~~H~ 260 (526)
T PLN03198 188 DFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIIC-C---SK---SISAVLASACMMALCFQQCGWLSHDFLHN 260 (526)
T ss_pred hHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHH-H---Hc---cHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5889999875 578999988766666655555555444322 1 11 23335566778999999999999999999
Q ss_pred CcCCCchhhHHHHHHHHh-hccCchHHhHHhhcccccCCCCCC-----CCCCcccchhhhHhHHHHHh----cChhHHHH
Q 016781 111 AFSDYQWLDDTVGLILHS-CLLVPYFSWKYSHRRHHSNTGSLD-----RDEVFVPKQKTAIGWYAKYL----NNPLGRVI 180 (383)
Q Consensus 111 s~~~~~~~N~~lg~l~~~-~~~~p~~~wr~~H~~HH~~tn~~~-----~Dpd~~p~~~~~~~~~~~~~----~~p~~~~~ 180 (383)
++++++++|+++|.+++. +++.|+.+||.+||.||.+||..+ .|||+...+-. ++..+.. ...+.++.
T Consensus 261 s~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~--~~~~~~~~~~~~~~~~~~~ 338 (526)
T PLN03198 261 QVFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLI--AWSKDILATVENKTFLRIL 338 (526)
T ss_pred cccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCcccee--EechhhhhcchhhhHHHHH
Confidence 999999999999998764 567999999999999999999987 79998533210 0010000 01111111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016781 181 TLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLL 260 (383)
Q Consensus 181 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~l 260 (383)
.+|+.+.++++.+....+... ..++..... .+.+++...+...++.+++.+ ...+...+.+..+.++++..+
T Consensus 339 --~yQh~~f~~ll~l~~~~~~~~---s~~~~~~~~-~~~~~~~~e~~~~l~~~~~~~--~l~l~~~~~~~~l~~~~l~~~ 410 (526)
T PLN03198 339 --QYQHLFFMALLFFARGSWLFW---SWRYTSTAK-LAPADRLLEKGTILFHYFWFI--GTACYLLPGWKPLVWMAVTEL 410 (526)
T ss_pred --hhhhHHHHHHHHHHHHHHHHH---HHHHHhccc-cchHHHHHHHHHHHHHHHHHH--HHHHHHhccHHHHHHHHHHHH
Confidence 145544444332221110000 000000000 011122222222222111111 111223344444556777888
Q ss_pred HHHHHHHHHHhhcCCCCCCCccCCCCccHHhhhhhc-cCCCcc-chhHHhcccccchhhhhhcCCCCcccHHHHHHHHHh
Q 016781 261 VVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALAT-VDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKP 338 (383)
Q Consensus 261 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T-~~~~~~-~l~~l~~~i~nyH~eHHlfP~iP~y~Lp~~~~~l~~ 338 (383)
++++++.++++++|+++++.. . +.||.+.|++| .|...+ |++|++||+ |||+||||||+||++|||++++++++
T Consensus 411 ~~g~~l~~vF~lnH~~~~v~~--~-~~dw~~~Qv~tT~n~~~~~~~~wf~GGL-N~QiEHHLFP~iP~~~l~~i~piVk~ 486 (526)
T PLN03198 411 MCGMLLGFVFVLSHNGMEVYN--K-SKEFVNAQIVSTRDIKANIFNDWFTGGL-NRQIEHHLFPTMPRHNLNKIAPQVEA 486 (526)
T ss_pred HHHHHHHhhhhccccCCCCCC--C-CcCHHHHHHhcCcCcCCchHHHHhhcCC-cccchhhcCCCCchhhHHHHhHHHHH
Confidence 999999999999999987642 2 23899999985 555544 789999999 99999999999999999999999999
Q ss_pred hhhcc-cccCCccHHHHHHHHhcccEEec
Q 016781 339 ILGEY-YQFDGTPFYKAMWREAKECLYVE 366 (383)
Q Consensus 339 ~~~~~-~~~~~~~~~~a~~~~~~~~~~~~ 366 (383)
.|+|+ +.|.+.++++++..+++.++.+-
T Consensus 487 ~C~k~GlpY~~~~~~~a~~~~l~~L~~vg 515 (526)
T PLN03198 487 FCIKHGLVYEDVSIAAGTCKVLKALKEVA 515 (526)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999 88888899999999988776653
No 6
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=2e-38 Score=317.11 Aligned_cols=323 Identities=12% Similarity=0.088 Sum_probs=207.8
Q ss_pred CHHHHHHhcC-CCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 016781 32 TLSQVKKAIP-PHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHH 110 (383)
Q Consensus 32 ~~~~l~~~l~-~~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hda~H~ 110 (383)
.++++++++. +++|++++......++..++++++++++.+ + .. +++..+++++++|+.+.++..++|||+|+
T Consensus 113 ~y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~~l~aillg~~~~~~g~l~HDa~H~ 185 (485)
T PLN03199 113 GYRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVF-Y---SD---RFAMHIASALLLGLFFQQCGWLAHDFLHH 185 (485)
T ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHH-H---cC---cHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4789999998 468998876554444444444444333221 1 11 34556778899999999988899999999
Q ss_pred CcCCCchhhHHHHHHHH-hhccCchHHhHHhhcccccCCCCC-------CCCCCcccch-----hhh---HhH-HHHHhc
Q 016781 111 AFSDYQWLDDTVGLILH-SCLLVPYFSWKYSHRRHHSNTGSL-------DRDEVFVPKQ-----KTA---IGW-YAKYLN 173 (383)
Q Consensus 111 s~~~~~~~N~~lg~l~~-~~~~~p~~~wr~~H~~HH~~tn~~-------~~Dpd~~p~~-----~~~---~~~-~~~~~~ 173 (383)
++++++++|+++|.+++ .+.+.|..+||.+||.||++||.. ++|||+...+ +.. .+. ......
T Consensus 186 ~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~~~~~~~~ 265 (485)
T PLN03199 186 QVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFREINADGKD 265 (485)
T ss_pred hhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhhhhhhccc
Confidence 99999999999998776 456899999999999999999973 6899974211 111 110 111111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCC--CC----CCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH-H-HH-
Q 016781 174 NPLGRVITLTVTLTLGWPLYLAFNVSGR--PY----DRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYC-L-VA- 244 (383)
Q Consensus 174 ~p~~~~~~~~~~~~~g~~l~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~- 244 (383)
..+.+++. .+|+.+.+|++.+....+. .+ ...........+ ..+++...... +++..++.++++. + ..
T Consensus 266 ~~~~~~~~-~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-e~~~~~~~~~~~~~lp~~~ 342 (485)
T PLN03199 266 SGFVKFAI-KFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALE-LEAKGLQYPLL-EKAGILLHYAWMFTLSSGF 342 (485)
T ss_pred cchhhHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cccchhHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 11222221 2456555555443221100 00 000000000000 01111111122 2222222222221 1 11
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccCCCCccHHhhhhhc-cCCCc-----c-chhHHhcccccchh
Q 016781 245 -AKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALAT-VDRDY-----G-ILNKVFHNITDTHV 316 (383)
Q Consensus 245 -~~g~~~~l~~~l~P~l~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T-~~~~~-----~-~l~~l~~~i~nyH~ 316 (383)
..+++..+.++++..++.++++.+++.++|..++.+ .+++..||.+.|++| .|.+. + |++|++||+ |||+
T Consensus 343 ~~~~~~~~l~~~~~~~~~~g~~l~~~f~l~H~~~~~~-~~~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GGL-N~QI 420 (485)
T PLN03199 343 GRFSFAYSAFYFFTATASCGFFLAIVFGLGHNGMATY-DADARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGGL-QYQV 420 (485)
T ss_pred ccccHHHHHHHHHHHHHHHhhHheEEEecCCcccccc-CCCCCccHHHHHHHhccCccCCCCCcchHHHHHhccc-hhhh
Confidence 244445566788888999999999999999976653 233445888999985 45532 2 789999999 9999
Q ss_pred hhhhcCCCCcccHHHHHHHHHhhhhcc-cccCCccHHHHHHHHhcccEEec
Q 016781 317 AHHLFSTMPHYHAMEATKAIKPILGEY-YQFDGTPFYKAMWREAKECLYVE 366 (383)
Q Consensus 317 eHHlfP~iP~y~Lp~~~~~l~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~ 366 (383)
||||||+||++|||++.+++++.|+|+ +.|.+.++.+++..+++.++.+-
T Consensus 421 EHHLFP~mp~~~y~~i~piVk~~C~k~glpY~~~~~~~a~~~~~~~L~~vg 471 (485)
T PLN03199 421 DHHLFPMLPRHNIAKCHALVESFCKEWGVKYHEADLVDGTMEVLHHLGKVA 471 (485)
T ss_pred hhhcCCCCchhhHHhhhHHHHHHHHHhCCCccccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999998888776653
No 7
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=100.00 E-value=1.4e-37 Score=298.15 Aligned_cols=278 Identities=26% Similarity=0.445 Sum_probs=186.3
Q ss_pred CCCHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 016781 30 PFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGH 109 (383)
Q Consensus 30 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hda~H 109 (383)
..+++++++.+|+++++++..+.+..++...++++++.. +..+. .+|+.++++++++|+.+.++++++|||+|
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~w~~~~l~~~~~~~~l~~~~~v~Hd~~H 87 (343)
T COG3239 15 AAPLDSIRARLPKPRTRRDAIAILITFLALAGLWALLAL-SLAYW------PSWWLLPLALLLAGLLLTGLFSVGHDCGH 87 (343)
T ss_pred ccchhhHHhhCccccccccHHHHHHHHHHHHHHHHHHHH-HHHhh------hhHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 447899999999998888877776666555555444332 22121 13788888899999999999999999999
Q ss_pred cCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCCcccchhhhHh---HHHHHhcChhHHHHHHHHHH
Q 016781 110 HAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIG---WYAKYLNNPLGRVITLTVTL 186 (383)
Q Consensus 110 ~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~---~~~~~~~~p~~~~~~~~~~~ 186 (383)
|+++|++|+||++|.+++.+.+.|+..||.+|+.||++||++|+|||..-..+...+ +.....+.++ +..
T Consensus 88 gs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~~~~~~~~~~~~~~l~~~~i~~~~-------~~~ 160 (343)
T COG3239 88 GSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPETYVSYPEQLRRGPLRFQLIRLPW-------LAF 160 (343)
T ss_pred cchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHHHHHhCchhhhhhhHHHHHHHHHH-------HHH
Confidence 999999999999999999988899999999999999999999888664211111100 0000001110 000
Q ss_pred HHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH
Q 016781 187 TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRER-LQIFISDAGILAMIYSLYCLVAAKGLVYVFCIY-GGPLLVVNG 264 (383)
Q Consensus 187 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-l~P~l~~~~ 264 (383)
..+ +.+..... ......+.+.++ ..+........++. + ..+..+..+| ++|+++.+.
T Consensus 161 ~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~---~-----~~~~~l~~~~~~~p~l~~~~ 219 (343)
T COG3239 161 GFG-PRWALLHF------------ELLEKLFKRSGKAPKAAALATLLAAIG---L-----AALLALAFFWGLIPLLLVGL 219 (343)
T ss_pred hhh-hhhhhhhh------------hhhhhccCCcccchHHHHHHHHHHHHH---H-----HHHHHHHHHHhHhHHHHHHH
Confidence 000 00000000 000000111111 11111111111111 1 1111122344 689999999
Q ss_pred HHHHHHhhcCCCCCCCccCCCCccHHhhhhh-ccCCCcc-chhHHhcccccchhhhhhcCCCCcccHHHHHHHHHhhhhc
Q 016781 265 FLVLITLLQHTHPSLPHYHSSEWDWFRGALA-TVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGE 342 (383)
Q Consensus 265 ~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~-T~~~~~~-~l~~l~~~i~nyH~eHHlfP~iP~y~Lp~~~~~l~~~~~~ 342 (383)
+..++++++|+.+.+++...++|++..+++. |++++.+ +++++++|+ |||+|||+||+||+|+||++++.+++.+++
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~l~~n~-nyH~~HHl~P~vP~y~lp~~~~~~~~~~~~ 298 (343)
T COG3239 220 WLVLVLFVHHTFDLLPHHGLEDWQWSDRALNARSNVDAPPLLRFLTGNI-NYHVEHHLFPDVPWYRLPRAHRLIKEALGE 298 (343)
T ss_pred HHHHHHHhhcccccccccccccchHHHHHHhccCccCchHHHHHhcCCc-cccHhhhCCCCCchhhHHHHHHHHHHHcCc
Confidence 9999999999988888777778888888887 5566665 689999999 999999999999999999999999999985
Q ss_pred c
Q 016781 343 Y 343 (383)
Q Consensus 343 ~ 343 (383)
.
T Consensus 299 ~ 299 (343)
T COG3239 299 R 299 (343)
T ss_pred C
Confidence 4
No 8
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=1e-36 Score=287.29 Aligned_cols=269 Identities=21% Similarity=0.221 Sum_probs=180.7
Q ss_pred CHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhcccccC
Q 016781 32 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHA 111 (383)
Q Consensus 32 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hda~H~s 111 (383)
+.+|+++ +.|+|+++++..++.++++++++.+++.... .++..+++.+++|+.+.+++.++|||+|++
T Consensus 2 ~~~~~~~-----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~He~~H~~ 69 (285)
T cd03511 2 PRQELKQ-----LMQRSDAPGLLDTALWLGALAVSGILIAWTW-------GSWWALPAFLVYGVLYAALFARWHECVHGT 69 (285)
T ss_pred CHHHHHH-----HhCCcchhHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4456665 6789999999999999888876554332111 233344556788988889999999999999
Q ss_pred cCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCCcccchhhhHhHHHHHhcChhHHHHHHHHHHHHHHH
Q 016781 112 FSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP 191 (383)
Q Consensus 112 ~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 191 (383)
++++|++|+++|.+++.+++.|+..||..|+.||++||+.++|||.....+.. +. +++ ....|++
T Consensus 70 ~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~--~~---------~~~----~~~~g~~ 134 (285)
T cd03511 70 AFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYTQIPGRDPELAVPRPPT--LR---------EYL----LALSGLP 134 (285)
T ss_pred ccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCCCCCCchH--HH---------HHH----HHHhChH
Confidence 99999999999999999999999999999999999999989999974211111 11 100 0111111
Q ss_pred --HHHHHh----hcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016781 192 --LYLAFN----VSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGF 265 (383)
Q Consensus 192 --l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~l~~~~~ 265 (383)
.+.+.. ..+. ....+ +....++++.+...+..+++++++++..++...|.+.++.+|++|++++..+
T Consensus 135 ~~~~~l~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~wllP~l~~~~~ 207 (285)
T cd03511 135 YWWGKLRTVFRHAFGA------VSEAE-KPFIPAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVLVWGLPLLLGQPI 207 (285)
T ss_pred HHHHHHHHHHHHHhcc------ccccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 011100 0100 00011 1112233344444444444444444444445667777788999999999989
Q ss_pred HHHHHhhcCCCCCCCccCCCCccHHhhhhhccCCCccchhHHhcccccchhhhhhcCCCCcccHHHHHHHHHhhhhcc
Q 016781 266 LVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEY 343 (383)
Q Consensus 266 ~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T~~~~~~~l~~l~~~i~nyH~eHHlfP~iP~y~Lp~~~~~l~~~~~~~ 343 (383)
+.+++++||.+.+ .. +.+. ++ .+|+..+ .|++++++|+ |||+|||++|+||+|+||++++.+++.+++.
T Consensus 208 ~~~~~~~eH~~~~--~~---~~~~-~~-trs~~~~-~~~~~l~~n~-nyH~eHHl~P~vP~y~Lp~~h~~L~~~~~~~ 276 (285)
T cd03511 208 LRLFLLAEHGGCP--ED---ANDL-RN-TRTTLTN-PPLRFLYWNM-PYHAEHHMYPSVPFHALPKLHELIKDDLPVP 276 (285)
T ss_pred HHHHHHhhcCCCC--cc---cchh-hh-hhhhhhh-HHHHHHHcCC-chHHHHhcCCCCcHhHHHHHHHHHHHhCCCC
Confidence 9999999998632 11 1111 22 2332111 4678899999 8999999999999999999999999988754
No 9
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=100.00 E-value=6.9e-37 Score=274.48 Aligned_cols=197 Identities=20% Similarity=0.257 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCCcccchhhhHhHH
Q 016781 89 YWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWY 168 (383)
Q Consensus 89 ~~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~ 168 (383)
++++.|+.+...+.++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||++||+.++|||+.+.+... .
T Consensus 3 ~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~---~ 79 (204)
T cd03506 3 LAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLA---R 79 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEE---e
Confidence 4667788888888999999999999999999999999999889999999999999999999999999985432110 0
Q ss_pred HHHhcChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016781 169 AKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGL 248 (383)
Q Consensus 169 ~~~~~~p~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 248 (383)
..+. +. .++..+.......+ .+..++.+ .
T Consensus 80 ----~~~~-----------------------------------~~---~~~~~~~~~~~q~~----~~~~~~~~---~-- 108 (204)
T cd03506 80 ----SEPA-----------------------------------FG---KDQKKRFLHRYQHF----YFFPLLAL---L-- 108 (204)
T ss_pred ----cccc-----------------------------------cc---cchHHHHHHHHHHH----HHHHHHHH---H--
Confidence 0000 00 00011111111111 01111111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc-CCCCccHHhhhhh-ccCCCc-cchhHHhcccccchhhhhhcCCCC
Q 016781 249 VYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHY-HSSEWDWFRGALA-TVDRDY-GILNKVFHNITDTHVAHHLFSTMP 325 (383)
Q Consensus 249 ~~~l~~~l~P~l~~~~~~~~~~~~~H~~~~~~~~-~~~~~~~~~~q~~-T~~~~~-~~l~~l~~~i~nyH~eHHlfP~iP 325 (383)
+.+|++|.++++++++++++++|..++++.. +++++||.+.|++ |+|... .|++++++|+ |||+||||||+||
T Consensus 109 ---~~~~~~~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggl-n~qieHHLfP~ip 184 (204)
T cd03506 109 ---LLAFLVVQLAGGLWLAVVFQLNHFGMPVEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGL-NYQIEHHLFPTMP 184 (204)
T ss_pred ---HHHHHHHHHHHhhhhheEeecccccccccCCCCCcccCHHHHHHhCcccCCCCCHHHHHhcch-hhHHHHhcCCCch
Confidence 5678999999999999999999999888764 4567899999998 466655 4799999999 9999999999999
Q ss_pred cccHHHHHHHHHhhhhcc
Q 016781 326 HYHAMEATKAIKPILGEY 343 (383)
Q Consensus 326 ~y~Lp~~~~~l~~~~~~~ 343 (383)
+++||++++++++.|+|+
T Consensus 185 ~~~l~~~~~~v~~~~~~~ 202 (204)
T cd03506 185 RHNYPKVAPLVRELCKKH 202 (204)
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 999999999999999885
No 10
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=100.00 E-value=6.9e-32 Score=252.05 Aligned_cols=247 Identities=20% Similarity=0.227 Sum_probs=152.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHH-HHHHHHHHHHHHHHHHhhcccccCcCCCchhhHHH
Q 016781 44 CFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWP-VYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTV 122 (383)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~-l~~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~l 122 (383)
+|++|+...+..++..++.+++++++. + .+|+..+ +++++.|+.+.++++++|||+|+++||++++|+++
T Consensus 11 L~~~~~~~~~~~~~~v~~~~~~~~~l~--------~-~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~~ 81 (289)
T cd03508 11 LFGPDPLTKWVVLGVVLLQIITAYLLR--------D-SSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRLF 81 (289)
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHh--------c-CcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHHH
Confidence 788898877766665555555432221 1 2455444 44566666778899999999999999999999999
Q ss_pred HHHHHhhccCchH-HhHHhhcccccCCCCCCCCCCcccchhhhHhHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 016781 123 GLILHSCLLVPYF-SWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGR 201 (383)
Q Consensus 123 g~l~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (383)
|.+++.+++.|+. .||..|+.||++||+.+.|||+.+.. ..++.+++.++.+.. . . .++++..+...
T Consensus 82 g~~~~~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~~------~~~l~~~~~g~~~~~---~-~-~~~~~~~rp~~- 149 (289)
T cd03508 82 GIFANLPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTEF------EGKLFSTVLGKAIWV---T-L-QPFFYALRPLF- 149 (289)
T ss_pred HHHHHHHhcCChhhHHHHHHHHhccCCCCCCCCCCcchHH------HHHHHhCchHHHHHH---H-H-HHHHHHhcccc-
Confidence 9999999999998 69999999999999988999986532 234456665443210 0 0 11111111110
Q ss_pred CCCCCccccCCCCCCCChhhHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 016781 202 PYDRFACHFDPYGPIYSDRERLQIFISDAGI-LAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLP 280 (383)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~l~~~l~P~l~~~~~~~~~~~~~H~~~~~~ 280 (383)
. .+ ++ ..+..+.++.. +++.+++ ...+|++.++ |+++..+.+.. -| |...
T Consensus 150 ------~--~~-----~~--~~~~~~~n~~~~~~~~~~l---~~~~G~~~~l--yll~~~~~~~~-------~~--p~~g 200 (289)
T cd03508 150 ------V--RP-----KP--PTRLEVINIVVQITFDYLI---YYFFGWKSLA--YLLLGSFLGGG-------LH--PLAG 200 (289)
T ss_pred ------c--CC-----Cc--chhHHHHHHHHHHHHHHHH---HHHhCcHHHH--HHHHHHHHHHh-------hc--cccc
Confidence 0 01 11 11222223333 2222222 2456776543 44454443321 12 3333
Q ss_pred ccCCCCccHHhhhhhccCCCccchhHHhcccccchhhhhhcCCCCcccHHHHHHHHHhhhhc
Q 016781 281 HYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGE 342 (383)
Q Consensus 281 ~~~~~~~~~~~~q~~T~~~~~~~l~~l~~~i~nyH~eHHlfP~iP~y~Lp~~~~~l~~~~~~ 342 (383)
+...|+|+......+|. ..++|+|++++|+ |||.|||++|+||+|+||++++..++.+++
T Consensus 201 ~~i~Eh~~~~~~~~~t~-S~y~~~~~~~~n~-~yH~~HH~~p~iP~~~Lp~~~~~~~~~~~~ 260 (289)
T cd03508 201 HFISEHYVFTGKGQETY-SYYGPLNLLTFNV-GYHNEHHDFPYIPGTRLPKLRKIAPEFYDN 260 (289)
T ss_pred ccccccccccccCcCCc-cchHHHHHHhhcc-ChHHHhcCCCCCCcccHHHHHHHCHHHHhC
Confidence 33334555432222232 1237899999999 899999999999999999999998776655
No 11
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=100.00 E-value=4.4e-32 Score=242.97 Aligned_cols=182 Identities=25% Similarity=0.363 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCCcccchh
Q 016781 83 YLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQK 162 (383)
Q Consensus 83 ~~~~~l~~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~ 162 (383)
|+-.+++.+++|+.+.++++++|||+|++++++|++|+++|.+++.+++.|+..||..|+.||++||+.++|||..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~---- 96 (207)
T cd03514 21 YLPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF---- 96 (207)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH----
Confidence 3334556777888889999999999999999999999999999998889999999999999999999998999972
Q ss_pred hhHhHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 016781 163 TAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCL 242 (383)
Q Consensus 163 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (383)
.. +. .. .. . +.++++.+++
T Consensus 97 ----~~----------------~~-~~--------------------------------~~----~-~~~~~~~~~~--- 115 (207)
T cd03514 97 ----LL----------------EW-LV--------------------------------AR----S-LFITLLVIAI--- 115 (207)
T ss_pred ----HH----------------HH-HH--------------------------------HH----H-HHHHHHHHHH---
Confidence 00 00 00 00 0 0000100011
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCCCccCCCCccHHhhhhhccCCCcc-chhHHhcccccchhhhhh
Q 016781 243 VAAKGLVYVFCIYGGPLLVVNGFLVL-ITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHL 320 (383)
Q Consensus 243 ~~~~g~~~~l~~~l~P~l~~~~~~~~-~~~~~H~~~~~~~~~~~~~~~~~~q~~T~~~~~~-~l~~l~~~i~nyH~eHHl 320 (383)
...+.+.++++|++|.++++.++++ .++++|... .++++|+.. ++ . .+ +++++++|+ |||.|||+
T Consensus 116 -~~~~~~~~~l~~~iP~l~~~~~l~~~~~~~~H~~~----~~~~~~~~~----~~--~-~~~l~~~l~~~~-nyH~~HHL 182 (207)
T cd03514 116 -LFGFLWELLNLWFLPALIVGTYLALFFDWLPHHPF----EETQRWDNS----RV--Y-PSKLLNPLIMGQ-NYHLVHHL 182 (207)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHheeeCccCC----CCccchhhh----hc--c-cchhHheeecCC-chhHHHhC
Confidence 1233445667899999999999975 678888742 122333221 11 1 14 568899999 89999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhc
Q 016781 321 FSTMPHYHAMEATKAIKPILGE 342 (383)
Q Consensus 321 fP~iP~y~Lp~~~~~l~~~~~~ 342 (383)
||+||+||||++++.+++...+
T Consensus 183 ~P~IP~y~Lp~a~~~~~~~~~~ 204 (207)
T cd03514 183 WPSIPWYRYPEAYYANKPLLDA 204 (207)
T ss_pred CCCCchhhhHHHHHHhHHHHhh
Confidence 9999999999999999987754
No 12
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.97 E-value=6.3e-31 Score=236.50 Aligned_cols=191 Identities=20% Similarity=0.304 Sum_probs=131.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccCcC-CCchhhHHHHHHHH-hhccCchHHhHHhhcccccCCCCCCCCCCccc
Q 016781 82 SYLAWPVYWALQGCILTGVWVVAHECGHHAFS-DYQWLDDTVGLILH-SCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 159 (383)
Q Consensus 82 ~~~~~~l~~~~~g~~~~~l~~l~Hda~H~s~~-~~~~~N~~lg~l~~-~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p 159 (383)
++.+.+++++++|+.+.++++++|||+|++++ +++++|+++|.+++ ++.+.|+..||..|+.||+++|++ +|||+.+
T Consensus 28 ~~~~~~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~ 106 (225)
T cd03513 28 SLLLIAAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHK 106 (225)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCC
Confidence 34455556778999999999999999999999 79999999999985 567899999999999999999997 9999976
Q ss_pred chhhh-HhHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 016781 160 KQKTA-IGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYS 238 (383)
Q Consensus 160 ~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (383)
.++.. .+|+..+ ++ -| ++ ..+.. .+ ...+.
T Consensus 107 ~~~~~~~~wy~~f----------------~~--~y-----------------------~~---~~qli----~l-~ivw~ 137 (225)
T cd03513 107 GNPSGFLPWYLHF----------------MS--NY-----------------------FG---WRQLA----IL-AAVWL 137 (225)
T ss_pred CCCCChHHHHHHH----------------HH--hH-----------------------hH---HHHHH----HH-HHHHH
Confidence 43221 1111000 00 00 00 01111 11 11111
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCCCccCCCCccHHhhhhhccCCCc-cchhHH-hcccccch
Q 016781 239 LYCLVAAKGLVYVFCIYGGPLLVVNGFLVLI-TLLQHTHPSLPHYHSSEWDWFRGALATVDRDY-GILNKV-FHNITDTH 315 (383)
Q Consensus 239 l~~~~~~~g~~~~l~~~l~P~l~~~~~~~~~-~~~~H~~~~~~~~~~~~~~~~~~q~~T~~~~~-~~l~~l-~~~i~nyH 315 (383)
++......+...++.+|++|.+++++.++.+ +++.|..++.|..+. . +.+| +++ +|++.+ |.++ +||
T Consensus 138 ~~l~~~~~~~~~~~~~~~~P~l~~~~~l~~f~T~lpH~~~~~~~~~~------~-~a~~--~~~~~~~~~l~c~~f-gyH 207 (225)
T cd03513 138 LLLGLGSAPLANLLLFWALPLILSSLQLFYFGTWLPHRPGRGGFADR------H-RARS--SRLSPVLSFLTCYHF-GYH 207 (225)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc------c-ccee--cCccHHHHHHHHHhc-Ccc
Confidence 1111112356678899999999999999777 899997655443211 1 1122 333 578885 5889 699
Q ss_pred hhhhhcCCCCcccHHHH
Q 016781 316 VAHHLFSTMPHYHAMEA 332 (383)
Q Consensus 316 ~eHHlfP~iP~y~Lp~~ 332 (383)
.|||+||+||||+||++
T Consensus 208 ~eHH~fP~~Pw~~Lp~~ 224 (225)
T cd03513 208 HEHHLSPSTPWWRLPEL 224 (225)
T ss_pred hhhccCCCCCcccCccc
Confidence 99999999999999986
No 13
>PLN02579 sphingolipid delta-4 desaturase
Probab=99.97 E-value=3.3e-30 Score=243.65 Aligned_cols=233 Identities=16% Similarity=0.200 Sum_probs=138.9
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHhhcccccCcCCCchhhHHHHHHHHhhccCchH-HhHHhhcccccCCCCCCCCCCccc
Q 016781 82 SYLAWPV-YWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYF-SWKYSHRRHHSNTGSLDRDEVFVP 159 (383)
Q Consensus 82 ~~~~~~l-~~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p 159 (383)
+|+..++ ++++.|+...++++++|||+|+++|+++++|+++|.+++.+++.|+. +||..|+.||++||+.+.|||+.+
T Consensus 69 ~w~~~l~~a~~~~g~~~~~lf~~~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t 148 (323)
T PLN02579 69 GWPKILLVAYFFGGFLNHNLFLAIHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPS 148 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCc
Confidence 5665555 46677777788999999999999999999999999999888999987 799999999999999889999643
Q ss_pred chhhhHhHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 016781 160 KQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSL 239 (383)
Q Consensus 160 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (383)
. .+. +++++++.++++ ...+ ++++..+ .. . ..+ ++..+.. .+ ++++.+. ..
T Consensus 149 ~-~E~-----~l~~~~~~~~~~----~~~~-~~f~~~r-p~------~--~~~-----~~~~~~~-~i-n~~~~~~--~~ 199 (323)
T PLN02579 149 Q-GEA-----RLVRNTLSKIVW----VFLQ-LFFYALR-PL------F--VNP-----KPPGLWE-FI-NLLTQIA--FD 199 (323)
T ss_pred h-hhH-----HHHHHHHHHHHH----HHHH-HHHHHhh-HH------h--hcc-----CCchHHH-HH-HHHHHHH--HH
Confidence 2 221 223344443322 1111 2222211 00 0 011 1111222 22 2332111 11
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccCCCCccHHhhhhhccCCCccchhHHhcccccchhhhh
Q 016781 240 YCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHH 319 (383)
Q Consensus 240 ~~~~~~~g~~~~l~~~l~P~l~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T~~~~~~~l~~l~~~i~nyH~eHH 319 (383)
.++....|+..++. .++|.+++ .|.+|..++...+.+.....| +|. .-++++|++++|+ |||.|||
T Consensus 200 ~~l~~~~G~~~lly-l~~~~~~~----------~~lhp~~g~~~~ehy~~~~~~-ety-syyg~ln~l~~Ni-gYH~eHH 265 (323)
T PLN02579 200 AALVYFAGWKSLAY-LILSTFLG----------GGLHPMAGHFISEHYVFNPGQ-ETY-SYYGPLNLLTWNV-GYHNEHH 265 (323)
T ss_pred HHHHHHHCHHHHHH-HHHHHHHh----------cccccccceeeccceeccCCC-Cce-eehhHHHHHhhcc-cccHhhc
Confidence 22334567776542 22232221 133444443323333221211 131 2238999999999 7999999
Q ss_pred hcCCCCcccHHHHHHHHHhhhhcccccCCccHHHHHHHHh
Q 016781 320 LFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREA 359 (383)
Q Consensus 320 lfP~iP~y~Lp~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 359 (383)
.||+||+|+||+++++..+.+.+ +. ...++.+.+++=+
T Consensus 266 ~fP~IP~~~Lp~l~~~~pe~y~~-l~-~~~sw~~~~~~fi 303 (323)
T PLN02579 266 DFPRIPGSKLHKVKEIAPEYYDN-LK-SYKSWSQVIYMYI 303 (323)
T ss_pred CCCCCchhhHHHHHHhCHHHHhC-CC-CcCcHHHHHHHHH
Confidence 99999999999988755443322 22 2345667777655
No 14
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=2.2e-29 Score=235.72 Aligned_cols=220 Identities=20% Similarity=0.206 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCC--CCCCCCcccchhhhH
Q 016781 88 VYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGS--LDRDEVFVPKQKTAI 165 (383)
Q Consensus 88 l~~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~--~~~Dpd~~p~~~~~~ 165 (383)
++.++.|......++++|||+|+++||+|++|+++|.++ ..++.|+..||.+|+.||++||. .++|||....+++++
T Consensus 29 ~~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~ 107 (288)
T cd03509 29 LATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQW 107 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHHH
Confidence 345666666677788999999999999999999999885 34568999999999999999994 457999754443321
Q ss_pred hHHHHHhcChhHHHHHHHHHH-----HHHHHHHHHHhhcCCCCCCCccccCCCCCCCCh--hhHHHHHHHHHHHHHHHHH
Q 016781 166 GWYAKYLNNPLGRVITLTVTL-----TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSD--RERLQIFISDAGILAMIYS 238 (383)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~~-----~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 238 (383)
+ + ..++.+.+..+++. .+| |.+.+...... . +. .+.+ +....++...++.++. .
T Consensus 108 ~---~--~~~~~r~~~~~~~~~~~~~l~g-p~l~~~~~~~~-----~--~~----~~~~~~~~~~~~~~~~~~~~~~--~ 168 (288)
T cd03509 108 A---R--LPRWQRALLRANNTLLGRLILG-PPLGLIAFARD-----E--FR----ALRAGDRAALRAWLLHAALLAP--L 168 (288)
T ss_pred h---h--CcHHHHHHHHHhhcchhHHhhh-hHHHHHHHHHH-----H--HH----HhccccHHHHHHHHHHHHHHHH--H
Confidence 1 0 11122222112222 233 21111111000 0 00 0111 1222233322222111 1
Q ss_pred HHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCCccCCCCccHHhhhhhccCCCc-cchhHHhcccccchh
Q 016781 239 LYCLVAAKGLVYVFCIYGGPL-LVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDY-GILNKVFHNITDTHV 316 (383)
Q Consensus 239 l~~~~~~~g~~~~l~~~l~P~-l~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T~~~~~-~~l~~l~~~i~nyH~ 316 (383)
+..+....|+. +++|++|. ..+..+..+.++.||..... . ++ +|+.... ++++++++|+ |||.
T Consensus 169 l~~~~~~~~~~--~~~~~l~~~~la~~~~~~~~~~Eh~~~~~---------~--~~-rs~~~~~~~~~~~l~~ni-nyH~ 233 (288)
T cd03509 169 LAWLQLSAGIP--WWAYLLAVYYPALSLAKIRTFLEHRAHER---------P--RG-RTVINEAGGPLRLLFLNN-NLHV 233 (288)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHHHHHHHhhchHhhccCCCC---------c--cC-CceeeeCcHHHHHHHhcC-CchH
Confidence 11111122332 22334544 44455567788888865211 1 01 2321222 3588999999 8999
Q ss_pred hhhhcCCCCcccHHHHHHHHHhhhhc
Q 016781 317 AHHLFSTMPHYHAMEATKAIKPILGE 342 (383)
Q Consensus 317 eHHlfP~iP~y~Lp~~~~~l~~~~~~ 342 (383)
|||++|+||+|+||++++.+++.+++
T Consensus 234 ~HH~~P~vP~y~Lp~~h~~~~~~~~~ 259 (288)
T cd03509 234 VHHDLPTLPWYDLPRLYRARRDAYLR 259 (288)
T ss_pred hhcCCCCCCcccHHHHHHHhHHHHhh
Confidence 99999999999999999999998765
No 15
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.97 E-value=3.9e-31 Score=243.38 Aligned_cols=248 Identities=24% Similarity=0.334 Sum_probs=153.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCCcccchh
Q 016781 83 YLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQK 162 (383)
Q Consensus 83 ~~~~~l~~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~ 162 (383)
|+.++++.++.|..+.+++.++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||+++|+.++|||..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~~~ 82 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTRRL 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchhhh
Confidence 45556677788888889999999999999999999999999999999899999999999999999999888999754311
Q ss_pred hhHhHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 016781 163 TAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCL 242 (383)
Q Consensus 163 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (383)
...+.... .....+++............+...... . ... ...+...+. .........+...++...
T Consensus 83 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 148 (257)
T PF00487_consen 83 PPHQPWRP--LFSYRRFLFRFLLSLFFPIWYFIFFFR--------K-RRM--RRRRKRPRR-YLILAALLLALLLALLAA 148 (257)
T ss_pred hhhhhhhh--hhhhhhccccccccccccchhhhhhcc--------c-ccc--ccccccchh-HHHHHHHhhhhhhhhhhh
Confidence 00000000 000000000000000000000000000 0 000 000001001 111112222222222222
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccCCCCccHHhhhhh-ccCCCc-cchhHHhcccccchhhhhh
Q 016781 243 VAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALA-TVDRDY-GILNKVFHNITDTHVAHHL 320 (383)
Q Consensus 243 ~~~~g~~~~l~~~l~P~l~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~-T~~~~~-~~l~~l~~~i~nyH~eHHl 320 (383)
....+....+++|++|.++...++.++++++|...+. ...++..++..+++. +++... .+++++++|+ |||+|||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~H~~HHl 226 (257)
T PF00487_consen 149 LFFFSPWWALLLFLLPFLIGSFFLAFVTYLEHYGLDP-DDNEDTRDFYYRQLPGSSNVHNSWWLNWLTGGL-NYHIEHHL 226 (257)
T ss_pred hcccccccchhHHHHHHhHHHHHHHHhhHHhhhcccc-cccccccceecccccccccccCchhhhccccCC-CChHHhCC
Confidence 2334445567788899999999999999999987543 112233445455554 333333 4788899999 89999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcc-ccc
Q 016781 321 FSTMPHYHAMEATKAIKPILGEY-YQF 346 (383)
Q Consensus 321 fP~iP~y~Lp~~~~~l~~~~~~~-~~~ 346 (383)
||+||+++||++++.+++.|+++ ..+
T Consensus 227 ~P~vp~~~l~~~~~~~~~~~~~~~~~y 253 (257)
T PF00487_consen 227 FPGVPWYNLPEAHPILKEVCPEYGVPY 253 (257)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCCce
Confidence 99999999999999999999987 443
No 16
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.97 E-value=4.2e-30 Score=241.96 Aligned_cols=298 Identities=16% Similarity=0.193 Sum_probs=178.9
Q ss_pred CCHHHHHHhcCC-CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 016781 31 FTLSQVKKAIPP-HCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGH 109 (383)
Q Consensus 31 ~~~~~l~~~l~~-~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hda~H 109 (383)
-+++++|+++++ .++..+..-.+...+.+++..++ |+ + +-+.+.+++++++|.++.....++||.+|
T Consensus 99 ~~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~----a~-~-------~i~~~~l~~a~Ll~~a~~Qs~~l~Hd~gH 166 (430)
T KOG4232|consen 99 ESFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVL----AW-L-------LIYLLSLISAVLLGLAWAQSGWLQHDYGH 166 (430)
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH----HH-H-------HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 368888888886 34554443333322222222222 21 1 01233677889999999999999999999
Q ss_pred cCcCCCchhhHHHHHHHHhh-ccCchHHhHHhhcccccCCCCCCCCCCcccch------hhhH--hHHH-HHhcChhHHH
Q 016781 110 HAFSDYQWLDDTVGLILHSC-LLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQ------KTAI--GWYA-KYLNNPLGRV 179 (383)
Q Consensus 110 ~s~~~~~~~N~~lg~l~~~~-~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~------~~~~--~~~~-~~~~~p~~~~ 179 (383)
.+.+|++++|+++..+++.. .+.|..+|+..|+.||.++|..++|||....+ ...+ .... ++..-+.+.+
T Consensus 167 ~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g~~~~~~~~k~krk~~~~~~qh~ 246 (430)
T KOG4232|consen 167 LSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLLGDPNSHEYGKKKRKYTPYPEQHL 246 (430)
T ss_pred ccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhhCCCchhhhcccceeEeecccceE
Confidence 99999999999999988875 46999999999999999999999999974222 0000 0000 0000011110
Q ss_pred H------HHHHHHHHHHHH-HHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHH
Q 016781 180 I------TLTVTLTLGWPL-YLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIY-SLYCLVAAKGLVYV 251 (383)
Q Consensus 180 ~------~~~~~~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~ 251 (383)
+ .++.++.+++.. ++.... ..+.+..+.......+++..... .+..++...+
T Consensus 247 yf~~~~~p~l~~~~~~~~~~~~~~~~----------------~~w~Dl~~~~~~~~~~~i~~~~~~~~~~~~~L~~---- 306 (430)
T KOG4232|consen 247 YFFLIGPPFLRLMWFQQSIIFVQTNL----------------LLWYDLYWPDRFYLRAFIYLHWGWGLLLLSCLPN---- 306 (430)
T ss_pred EEEeccchHHHHHHHHHHHHHHHhHH----------------HHHHHhhhhhhHHHhhHHHhcchhhhHHHHhccC----
Confidence 0 001111111100 000000 00111111111111111111110 0111111111
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhcCCCCCCCccCCCCccHHhhhhh-ccCCCc-cchhHHhcccccchhhhhhcCCCCccc
Q 016781 252 FCIYGGPLLVVNGFLVLI-TLLQHTHPSLPHYHSSEWDWFRGALA-TVDRDY-GILNKVFHNITDTHVAHHLFSTMPHYH 328 (383)
Q Consensus 252 l~~~l~P~l~~~~~~~~~-~~~~H~~~~~~~~~~~~~~~~~~q~~-T~~~~~-~~l~~l~~~i~nyH~eHHlfP~iP~y~ 328 (383)
|.+=.+.+ .+..++ ...+|..+++....+...||...|+. |+|+.. .|++|+.+++ |+|+||||||+||++|
T Consensus 307 ---w~~r~~~~-~~s~~v~l~~nH~~~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghl-n~qieHHLFPtmpr~n 381 (430)
T KOG4232|consen 307 ---WPIRFLFS-SWSFWVTLTMNHIDPEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHL-NFQIEHHLFPTMPRHN 381 (430)
T ss_pred ---chHHHHHH-HHHHHHHHhhhccchhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhh-hhhHHhhcCCCCCccc
Confidence 11111222 222233 37788877765543334889999987 566665 5999999999 8999999999999999
Q ss_pred HHHHHHHHHhhhhcc-cccCCccHHHHHHHHhcccEEe
Q 016781 329 AMEATKAIKPILGEY-YQFDGTPFYKAMWREAKECLYV 365 (383)
Q Consensus 329 Lp~~~~~l~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 365 (383)
|+++++.+++.|+|+ +.|.+.++++++++..++++..
T Consensus 382 L~~v~P~Vke~c~k~~l~y~~~~~~~~~~~~~~~lr~~ 419 (430)
T KOG4232|consen 382 LNKVAPLVKELCKKHGLPYREKPHFEALGDIIQQLRNS 419 (430)
T ss_pred hHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHhhhc
Confidence 999999999999999 9999999999999999887654
No 17
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=4.3e-30 Score=223.97 Aligned_cols=169 Identities=22% Similarity=0.361 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHHHHHHHHHhhcccccCcCCCchhhHHHHHHH-HhhccCchHHhH
Q 016781 60 LTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLIL-HSCLLVPYFSWK 138 (383)
Q Consensus 60 ~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~lg~l~-~~~~~~p~~~wr 138 (383)
+++|+++++++. + .+ +|++++++++++|..+.++++++|||+|++++|+|++|+++|.++ +.+++.|++.||
T Consensus 2 w~~i~~~~~~~~-~---~~---~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r 74 (175)
T cd03510 2 WLVIAAAVALAL-A---WP---NWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYR 74 (175)
T ss_pred hHHHHHHHHHHH-H---hc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHH
Confidence 445555555443 2 12 577788889999999999999999999999999999999999754 578899999999
Q ss_pred HhhcccccCCCCCCCCCCcccchhhhHhHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCC
Q 016781 139 YSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYS 218 (383)
Q Consensus 139 ~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (383)
..|+.||+++|+ ++|||..
T Consensus 75 ~~H~~HH~~~~~-~~Dpd~~------------------------------------------------------------ 93 (175)
T cd03510 75 RSHLKHHRHLGT-EDDPDLA------------------------------------------------------------ 93 (175)
T ss_pred HHHHHHhCccCC-CCCCcHH------------------------------------------------------------
Confidence 999999999998 7898850
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCCccCCCCccHHhhhhhcc
Q 016781 219 DRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFL-VLITLLQHTHPSLPHYHSSEWDWFRGALATV 297 (383)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~l~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T~ 297 (383)
.++.+|++|++++...+ .+..+.+|...+. +++.+ ..+.+|+
T Consensus 94 -------------------------------~~~~~W~~P~~~~~~~~~~~~~~~eH~~~~~----~~~~~--~~~tr~~ 136 (175)
T cd03510 94 -------------------------------LYLLLWLVPLLTVFPLIGRIREIAEHAGVPA----DEDPD--ARNTRTT 136 (175)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCC----CCcch--hhcCccc
Confidence 23356777888777644 6667889976321 11111 1122332
Q ss_pred CCCccchhH-Hh--cccccchhhhhhcCCCCcccHHHHHHHH
Q 016781 298 DRDYGILNK-VF--HNITDTHVAHHLFSTMPHYHAMEATKAI 336 (383)
Q Consensus 298 ~~~~~~l~~-l~--~~i~nyH~eHHlfP~iP~y~Lp~~~~~l 336 (383)
..+|+++ ++ .|+ |||.|||++|+||+|+|||+++.+
T Consensus 137 --~~~~~~r~l~~p~~~-~YH~eHHl~P~vP~~~Lp~~h~~l 175 (175)
T cd03510 137 --FGGWIERLLFAPHNI-NYHLEHHLFPAVPFYNLPKAHRIL 175 (175)
T ss_pred --cccHHHHHHHcccCC-cHHHHHhCCcCCchhhHHHHHHhC
Confidence 2267665 44 488 899999999999999999999864
No 18
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.89 E-value=3.5e-22 Score=175.46 Aligned_cols=254 Identities=20% Similarity=0.215 Sum_probs=152.1
Q ss_pred CCHHHHHHhcCC--CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHH-HHHHHHHHHHHHHHHhhcc
Q 016781 31 FTLSQVKKAIPP--HCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPV-YWALQGCILTGVWVVAHEC 107 (383)
Q Consensus 31 ~~~~~l~~~l~~--~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l-~~~~~g~~~~~l~~l~Hda 107 (383)
=..+||.++.|+ .+|.+|+.--+.-+ .+++.-+. +.+. +.. ++|...+. +.++-|+....++...||-
T Consensus 21 sRR~eIL~kyPeIk~Lfg~dp~~kwvv~--~~Vi~Q~~---~~~l---l~d-l~W~~il~~AYf~gg~iNhsl~LAIHei 91 (324)
T KOG2987|consen 21 SRRKEILAKYPEIKSLFGPDPNLKWVVL--GMVILQIL---AAYL---LRD-LDWKWILFIAYFFGGFINHSLTLAIHEI 91 (324)
T ss_pred hHHHHHHHhChHHHHHhCCCcchHHHHH--HHHHHHHH---HHHH---Hhc-ccHHHHHHHHHHhhhhhchhHHHHHHHh
Confidence 368999999995 68988876544322 22222221 1111 111 34543333 3455666667888889999
Q ss_pred cccCcCCC--chhhHHHHHHHHhhccCchH-HhHHhhcccccCCCCCCCCCCcccchhhhHhHHHHHhcChhHHHHHHHH
Q 016781 108 GHHAFSDY--QWLDDTVGLILHSCLLVPYF-SWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTV 184 (383)
Q Consensus 108 ~H~s~~~~--~~~N~~lg~l~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 184 (383)
+|+.-|++ +-.|+++|.++.+|++.|+. +.|..|..||++.+.++-|-|..+..+ ..++++.++++++...
T Consensus 92 SHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~E------a~~f~t~~~K~iw~~l 165 (324)
T KOG2987|consen 92 SHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRFE------AWLFDTAFGKLIWVTL 165 (324)
T ss_pred hhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchhh------eehhhhhhHHHHHHHH
Confidence 99999987 78999999999999998887 899999999999998888888643222 1345677788777555
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016781 185 TLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNG 264 (383)
Q Consensus 185 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~l~~~~ 264 (383)
|.++ +.++- ....|+. .+..|. +..+..+.+-+. .+.++|+..++ +.++..+++
T Consensus 166 QpfF-----Y~fRP---------l~i~pkp--~t~me~----iN~iiQ~~fd~l---i~~f~G~ksl~-Yll~~s~lg-- 219 (324)
T KOG2987|consen 166 QPFF-----YAFRP---------LFIYPKP--PTDMEF----INTIIQLSFDLL---IVYFFGWKSLA-YLLASSFLG-- 219 (324)
T ss_pred HHHH-----Hhhhh---------heecCCC--chHHHH----HHHHHHHHHHHH---HHHHHhHHHHH-HHHHHHHHc--
Confidence 4321 11110 0011221 111221 122222222211 22467887653 222222211
Q ss_pred HHHHHHhhcCCCCCCCccCCCCccHHhhhhhccCCC-ccchhHHhcccccchhhhhhcCCCCcccHHHHHHHHH
Q 016781 265 FLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRD-YGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIK 337 (383)
Q Consensus 265 ~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T~~~~-~~~l~~l~~~i~nyH~eHHlfP~iP~y~Lp~~~~~l~ 337 (383)
.- .+|...+.-.|...+.++| +| .+ +|.+|+++.|. +||+|||-||.||..+||++.++..
T Consensus 220 ------~g--LHP~aGHFisEHY~f~k~~-ET--ySYYGplN~~tfNv-GYH~EHHDFP~Ipg~~Lp~Vr~iAp 281 (324)
T KOG2987|consen 220 ------MG--LHPIAGHFISEHYMFKKGQ-ET--YSYYGPLNLLTFNV-GYHVEHHDFPYIPGSRLPKVREIAP 281 (324)
T ss_pred ------CC--CCcccchhhHhhhhhcCCc-cc--eeeecceeeEEEec-ccccccccCCCCCccccHHHHHhhH
Confidence 11 1233333323333343333 34 23 38999999999 6999999999999999988877654
No 19
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.80 E-value=3.1e-18 Score=162.58 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=122.2
Q ss_pred chhhHHHHHHHHHHHHHHHH-HHHhhcccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhc-ccccCCCCCCCCCCcc
Q 016781 81 LSYLAWPVYWALQGCILTGV-WVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHR-RHHSNTGSLDRDEVFV 158 (383)
Q Consensus 81 ~~~~~~~l~~~~~g~~~~~l-~~l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~-~HH~~tn~~~~Dpd~~ 158 (383)
.+|+..+.+.+..|+...++ ...+||++| |++++|+++|.++..+. ++..|+..|+ .||+++++ ++|||..
T Consensus 67 ~~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~--~~~~~~~~H~~~HH~~v~t-p~DP~ta 139 (314)
T cd03512 67 LSALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASL--LYGHFAIEHVRGHHRYVAT-PEDPATA 139 (314)
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHh--cccceeeeecccCCCCCCC-CCCcccc
Confidence 46777777777788766543 567888888 67999999999887654 4445889999 89999997 6899974
Q ss_pred cchhhhHhHHHHHhcChhHHHHHHHHHHHHHHHHHHH-HhhcCCCCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 016781 159 PKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLA-FNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIY 237 (383)
Q Consensus 159 p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (383)
.....-+++.. +..++ ....+|-..-- ....+ .+ .++.+ ..++...+. .+
T Consensus 140 r~ge~~y~f~~---r~~~g-------~~~~aw~~e~~rl~~~g----------~~---~~~~~--n~~l~~~~~----~~ 190 (314)
T cd03512 140 RRGESFYRFLP---RALVG-------SFRSAWKLEKKRLRRKG----------RS---PWSPR--NEVLRYLAL----AV 190 (314)
T ss_pred ccCccHHHHHH---HHHHH-------HHHHHHHHHHHHHHhcC----------CC---CCccc--hHHHHHHHH----HH
Confidence 32211111110 00000 01112211100 01011 01 01111 111111111 11
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccCCCCccHHhhhhhccCCCccchhHHhcccccchhh
Q 016781 238 SLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVA 317 (383)
Q Consensus 238 ~l~~~~~~~g~~~~l~~~l~P~l~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T~~~~~~~l~~l~~~i~nyH~e 317 (383)
+++.+++..+.+..+.++++|.+++.+.+..+.|+||.+-.....++...+..+.+ -+-|.+....|+++.|+ ++|.+
T Consensus 191 a~~~~~~~~~g~~~l~~~l~~~~~g~~~l~~~nY~EHyGL~r~~~~~gr~e~~~~~-hSWNs~~~~~n~l~~nl-~rHsd 268 (314)
T cd03512 191 ALLALAAALGGLAGLLFLLIQAFYAKSLLELVNYIEHYGLLRKKLANGRYEPVGPR-HSWNSNHIVSNLLLFNL-QRHSD 268 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccCCCc-cCcCcCcHHHHHHHHhc-chhhh
Confidence 22222233444445567889999998899999999998732211111111111000 01122223567899999 79999
Q ss_pred hhhcCCCCcccHHHHHHH
Q 016781 318 HHLFSTMPHYHAMEATKA 335 (383)
Q Consensus 318 HHlfP~iP~y~Lp~~~~~ 335 (383)
||.+|++|++.|+...+.
T Consensus 269 HH~~p~~~y~~L~~~~~~ 286 (314)
T cd03512 269 HHAHPTRPYQALRPFPEA 286 (314)
T ss_pred hccCCCCchhhccCCccC
Confidence 999999999999877754
No 20
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.73 E-value=8.5e-18 Score=138.05 Aligned_cols=59 Identities=39% Similarity=0.626 Sum_probs=55.0
Q ss_pred HHHHHhhcccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCCc
Q 016781 99 GVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVF 157 (383)
Q Consensus 99 ~l~~l~Hda~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~ 157 (383)
++..++|||+|+++++++++|++++.+++.+++.|++.|+..|+.||+++|+.++|||.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~ 72 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDS 72 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCcc
Confidence 67779999999999999999999999999988899999999999999999987788875
No 21
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=98.65 E-value=3.9e-08 Score=79.31 Aligned_cols=47 Identities=47% Similarity=0.817 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCCCHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH
Q 016781 20 PLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVF 66 (383)
Q Consensus 20 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~ 66 (383)
...+.+..+|++|++|||+++|+|||++|++|++.|+++|+++++++
T Consensus 88 ~~~fdp~apPPFtL~dIraAIPkHCf~k~~~rS~sYv~rDv~iv~gL 134 (136)
T PF11960_consen 88 EEEFDPGAPPPFTLADIRAAIPKHCFVKSPWRSMSYVVRDVAIVFGL 134 (136)
T ss_pred ccccCCCCCCCcCHHHHHhhcChhhcCCChHHHHHHHHHHHHHHHHh
Confidence 44566788999999999999999999999999999999999988764
No 22
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.56 E-value=8.3e-07 Score=80.24 Aligned_cols=52 Identities=29% Similarity=0.483 Sum_probs=40.1
Q ss_pred hhcc-cccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCC
Q 016781 104 AHEC-GHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEV 156 (383)
Q Consensus 104 ~Hda-~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd 156 (383)
-|-| +|+++.-.+++..++.....+-...|...|-..|..||++| +.+.||-
T Consensus 66 ~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~t-DTd~DPh 118 (289)
T COG1398 66 LHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKT-DTDQDPH 118 (289)
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhccc-CCCCCCC
Confidence 4554 78888888888887765555555688889999999999999 4467773
No 23
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.27 E-value=8.3e-05 Score=69.97 Aligned_cols=51 Identities=31% Similarity=0.445 Sum_probs=37.6
Q ss_pred hhc-ccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCC
Q 016781 104 AHE-CGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDE 155 (383)
Q Consensus 104 ~Hd-a~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dp 155 (383)
.|= .+|+++--++++..++..+..+-...|...|-..|..||+++.+ ++||
T Consensus 76 yHRl~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt-~~DP 127 (299)
T PLN02220 76 YHRNLAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDS-DRDP 127 (299)
T ss_pred HHHHHHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCc
Confidence 344 57888877888876665554444457888999999999999864 5665
No 24
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=97.32 E-value=0.0022 Score=59.72 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=36.9
Q ss_pred ccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCCC
Q 016781 107 CGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEV 156 (383)
Q Consensus 107 a~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd 156 (383)
=+|+++--++++.-++......-+--+...|-..|..||++|.+ |+||-
T Consensus 91 wsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdT-D~DPh 139 (321)
T KOG1600|consen 91 WSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDT-DADPH 139 (321)
T ss_pred cccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhcccccc-CCCCC
Confidence 47888887888877775554444446667888999999999975 67874
No 25
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=97.20 E-value=0.007 Score=52.69 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=38.6
Q ss_pred ccccCcCCCchhhHHHHHHHHhhccCchHHhHHhhcccccCCCCCCCCC
Q 016781 107 CGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDE 155 (383)
Q Consensus 107 a~H~s~~~~~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dp 155 (383)
.+|+++..++++..++..+..+....|...|...|..||+++.+ ++||
T Consensus 27 ~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt-~~DP 74 (178)
T cd03505 27 WAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDT-DGDP 74 (178)
T ss_pred HhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCC-CCCC
Confidence 47999988888888776666555568888999999999999865 4565
No 26
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=53.89 E-value=28 Score=32.82 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.8
Q ss_pred cchhhhhhcCCCCc
Q 016781 313 DTHVAHHLFSTMPH 326 (383)
Q Consensus 313 nyH~eHHlfP~iP~ 326 (383)
.+|.+||.+++.+.
T Consensus 99 ~~H~~HH~~~n~~~ 112 (289)
T cd03508 99 KYHLEHHRYLGEDG 112 (289)
T ss_pred HHHHHhccCCCCCC
Confidence 48999999988754
No 27
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=47.03 E-value=68 Score=29.00 Aligned_cols=57 Identities=18% Similarity=0.101 Sum_probs=31.3
Q ss_pred CHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCchhhHHHHHHHHHHHH
Q 016781 32 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCI 96 (383)
Q Consensus 32 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~~la~~~~~~~~~~~~~~~~~l~~~~~g~~ 96 (383)
+++++++...- --+.|++-.++.++.-++.++++..+++. . + +|+++++.+++.|+.
T Consensus 9 ~~~Qi~q~y~~-trk~dp~l~~~ml~a~l~~~~v~v~ig~l----~-~--~~~~~~i~gi~~g~l 65 (224)
T PF13829_consen 9 RRKQIWQAYKM-TRKEDPKLPWLMLGAFLGPIAVFVLIGLL----F-G--SWWYWLIIGILLGLL 65 (224)
T ss_pred HHHHHHHHHHH-HHHHCcchHHHHHHHHHHHHHHHHHHHHH----H-c--cHHHHHHHHHHHHHH
Confidence 67777775531 01345555566555555555554444541 1 2 567777777777754
No 28
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=43.65 E-value=71 Score=30.92 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=13.0
Q ss_pred chhhhhhcCCCCccc
Q 016781 314 THVAHHLFSTMPHYH 328 (383)
Q Consensus 314 yH~eHHlfP~iP~y~ 328 (383)
+|.-||......--.
T Consensus 118 ~H~~HH~~t~~~~~d 132 (343)
T COG3239 118 SHNQHHAHTNILDDD 132 (343)
T ss_pred hHHHhhcccCCCCCC
Confidence 799999999987776
No 29
>PLN02579 sphingolipid delta-4 desaturase
Probab=38.92 E-value=60 Score=31.19 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=11.1
Q ss_pred cchhhhhhcCCCC
Q 016781 313 DTHVAHHLFSTMP 325 (383)
Q Consensus 313 nyH~eHHlfP~iP 325 (383)
.+|.+||.++++.
T Consensus 128 ~~H~~HH~~~n~~ 140 (323)
T PLN02579 128 KYHLEHHRFQGVD 140 (323)
T ss_pred HHHHHHccCCCCC
Confidence 5899999999864
No 30
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=38.59 E-value=1.4e+02 Score=29.58 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCccCCCCccHHhhhhhccCCCccchhHHhcccccchhhhhhcCCC
Q 016781 256 GGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTM 324 (383)
Q Consensus 256 l~P~l~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~q~~T~~~~~~~l~~l~~~i~nyH~eHHlfP~i 324 (383)
++.-+..+.......+++|..-......+..||-+.+-. +.+.--|. ..=+++ .-|.+||..|.+
T Consensus 144 l~~a~Ll~~a~~Qs~~l~Hd~gH~~i~~~~~wN~~~~~f-v~n~L~G~-sa~WW~--~~H~~HHa~pN~ 208 (430)
T KOG4232|consen 144 LISAVLLGLAWAQSGWLQHDYGHLSIFKNSKWNHLAQKF-VGNHLKGF-SAAWWK--SHHNQHHAAPNS 208 (430)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHH-Hhhhcccc-cHHHHH--HHHhhhhccCcc
Confidence 333334444555667888976444444455665433221 11110010 001122 478899999987
No 31
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=38.21 E-value=96 Score=28.93 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=10.7
Q ss_pred cchhhhhhcCCCC
Q 016781 313 DTHVAHHLFSTMP 325 (383)
Q Consensus 313 nyH~eHHlfP~iP 325 (383)
..|..||.+++.|
T Consensus 97 ~~H~~HH~~~~~~ 109 (285)
T cd03511 97 WSHARHHRYTQIP 109 (285)
T ss_pred HHHHHHhcCcCCC
Confidence 3689999999766
No 32
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=34.00 E-value=2.5e+02 Score=25.21 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=10.5
Q ss_pred cchhhhhhcCCCC
Q 016781 313 DTHVAHHLFSTMP 325 (383)
Q Consensus 313 nyH~eHHlfP~iP 325 (383)
..|..||..++.+
T Consensus 86 ~~H~~HH~~~~~~ 98 (222)
T cd03507 86 ISHNRHHAHTGNL 98 (222)
T ss_pred HHHHHHHhccCCC
Confidence 4889999998764
No 33
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=33.36 E-value=1.3e+02 Score=30.66 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHhcC
Q 016781 1 MGAGGRMAVPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIP 41 (383)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 41 (383)
||.||--+ +.|+.+-+++++.+. +.+|.+|+++.-.
T Consensus 1 ~~~~~~~~----~~~~~~~~~~~~~~~-~~~s~~ev~~h~~ 36 (485)
T PLN03199 1 MGKGGDAA----AAKGRSAALKLAEKP-QKISWQEVKKHAS 36 (485)
T ss_pred CCCCCCCC----CCCCCccccccCccC-CccCHHHHHhhCC
Confidence 78888532 445666666666544 4589999987543
No 34
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=31.20 E-value=44 Score=31.09 Aligned_cols=42 Identities=17% Similarity=0.009 Sum_probs=23.5
Q ss_pred HHhhcccccCcCCC-chhhHHHHHHHHhhccCchHHhHHhhcccccCCCCC
Q 016781 102 VVAHECGHHAFSDY-QWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSL 151 (383)
Q Consensus 102 ~l~Hda~H~s~~~~-~~~N~~lg~l~~~~~~~p~~~wr~~H~~HH~~tn~~ 151 (383)
+++|-.|=..+... ..-|-+. .+++ +--|. .||.||.++|+.
T Consensus 207 sl~H~~Gyr~fd~~d~arN~ww---~al~--t~GEg---wHNnHHafp~~a 249 (289)
T COG1398 207 SLGHYIGYRPFDCRDTARNCWW---VALV--TFGEG---WHNNHHAFPNSA 249 (289)
T ss_pred hhhhhhcccccCCCCCccceeE---EEEe--ecccc---cccccccCcchh
Confidence 45677666666644 3333332 1222 12234 499999999964
No 35
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=30.41 E-value=3.7e+02 Score=25.27 Aligned_cols=16 Identities=25% Similarity=0.009 Sum_probs=12.2
Q ss_pred HhhcccccCCCCCCCC
Q 016781 139 YSHRRHHSNTGSLDRD 154 (383)
Q Consensus 139 ~~H~~HH~~tn~~~~D 154 (383)
..|..||.++..+-.+
T Consensus 230 nyH~~HH~~P~vP~y~ 245 (288)
T cd03509 230 NLHVVHHDLPTLPWYD 245 (288)
T ss_pred CchHhhcCCCCCCccc
Confidence 4699999999875433
No 36
>PLN02505 omega-6 fatty acid desaturase
Probab=25.84 E-value=2.1e+02 Score=28.18 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhcccccCcCCCchhhHHHHHHHH
Q 016781 90 WALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILH 127 (383)
Q Consensus 90 ~~~~g~~~~~l~~l~Hda~H~s~~~~~~~N~~lg~l~~ 127 (383)
.++.+..+.-++.++|-.-.-...+..-+|-.-|.+.+
T Consensus 259 ~lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~t 296 (381)
T PLN02505 259 LLIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALAT 296 (381)
T ss_pred HHHHHHHHHHHHHHhccCCCCCccCCCCcChhhcccee
Confidence 45555566667779998777777788888888887754
No 37
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=23.14 E-value=3.3e+02 Score=20.74 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCCCCC
Q 016781 16 VDSDPLKRVPCSKPPF 31 (383)
Q Consensus 16 ~~~~~~~~~~~~~~~~ 31 (383)
||+|.+||.....|+-
T Consensus 2 PkSk~rKk~~~~~~~~ 17 (87)
T PF06781_consen 2 PKSKVRKKAAYTPPPA 17 (87)
T ss_pred CCccccccccCCCCCc
Confidence 5677777777665543
No 38
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=23.02 E-value=1.8e+02 Score=25.56 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=10.2
Q ss_pred HhhcccccCCCCC
Q 016781 139 YSHRRHHSNTGSL 151 (383)
Q Consensus 139 ~~H~~HH~~tn~~ 151 (383)
..|+.||.+++.+
T Consensus 219 ~~H~~HHl~P~vp 231 (257)
T PF00487_consen 219 NYHIEHHLFPGVP 231 (257)
T ss_pred CChHHhCCCCCcC
Confidence 4699999998653
No 39
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=22.84 E-value=2.3e+02 Score=29.32 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=11.3
Q ss_pred cchhhhhhcCCCCc
Q 016781 313 DTHVAHHLFSTMPH 326 (383)
Q Consensus 313 nyH~eHHlfP~iP~ 326 (383)
+-|..||.+|.+.-
T Consensus 290 ~~Hn~HH~~tN~~~ 303 (526)
T PLN03198 290 EKHNLHHAAPNECD 303 (526)
T ss_pred HHHHHhccCCCCCC
Confidence 57889999988764
No 40
>PLN02598 omega-6 fatty acid desaturase
Probab=21.00 E-value=2.8e+02 Score=27.75 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=10.3
Q ss_pred chhhhhhcCCCC
Q 016781 314 THVAHHLFSTMP 325 (383)
Q Consensus 314 yH~eHHlfP~iP 325 (383)
.|..||-+++..
T Consensus 179 ~H~~HH~~tn~~ 190 (421)
T PLN02598 179 KHNTHHAHTNKL 190 (421)
T ss_pred HHHHHccCcCCC
Confidence 788999999875
No 41
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=20.63 E-value=2.6e+02 Score=24.79 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=11.3
Q ss_pred cchhhhhhcCCCC
Q 016781 313 DTHVAHHLFSTMP 325 (383)
Q Consensus 313 nyH~eHHlfP~iP 325 (383)
..|..||.+++.+
T Consensus 77 ~~H~~HH~~~~~~ 89 (207)
T cd03514 77 RVHMQHHAHTNDP 89 (207)
T ss_pred HHHHHHhcCcCcC
Confidence 4889999999986
No 42
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=20.55 E-value=1.3e+02 Score=25.88 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=11.0
Q ss_pred cchhhhhhcCCCC
Q 016781 313 DTHVAHHLFSTMP 325 (383)
Q Consensus 313 nyH~eHHlfP~iP 325 (383)
..|..||.+++.+
T Consensus 75 ~~H~~HH~~~~~~ 87 (175)
T cd03510 75 RSHLKHHRHLGTE 87 (175)
T ss_pred HHHHHHhCccCCC
Confidence 4899999999874
Done!