Query 016781
Match_columns 383
No_of_seqs 165 out of 1695
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 03:41:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k4f_A T-cell surface glycopro 58.9 5.3 0.00018 25.9 2.0 27 1-27 16-47 (57)
2 2dae_A KIAA0733 protein; mitog 53.5 8.6 0.00029 26.8 2.4 32 313-344 10-55 (75)
3 2l9u_A Receptor tyrosine-prote 18.9 50 0.0017 19.4 1.3 8 131-138 24-31 (40)
4 2kpm_A Uncharacterized protein 17.6 2.4E+02 0.008 21.2 5.3 59 325-383 38-98 (105)
5 2hdc_A Protein (transcription 16.6 1.5E+02 0.0051 21.9 3.9 51 328-379 24-77 (97)
6 1vtn_C HNF-3/FORK head DNA-rec 16.1 2.3E+02 0.0078 21.1 4.9 51 328-379 25-78 (102)
7 2c6y_A Forkhead box protein K2 14.7 3.2E+02 0.011 20.7 5.4 51 327-378 37-90 (111)
8 2hfh_A Genesis, HFH-2; HNF-3 h 12.6 1.3E+02 0.0043 22.9 2.6 50 328-378 25-77 (109)
9 2zjr_Z 50S ribosomal protein L 11.1 49 0.0017 22.2 -0.2 20 7-26 4-23 (60)
10 2kzv_A Uncharacterized protein 10.9 3.7E+02 0.013 19.5 4.6 55 326-382 26-81 (92)
No 1
>2k4f_A T-cell surface glycoprotein CD3 epsilon chain; ITAM, TCR, membrane bound protein, bicelle, immunoglobulin domain, membrane, phosphoprotein; NMR {Mus musculus}
Probab=58.85 E-value=5.3 Score=25.89 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=17.5
Q ss_pred CCCCcccc-----cCCCCCCCCCCCCCCCCCC
Q 016781 1 MGAGGRMA-----VPSTPMKVDSDPLKRVPCS 27 (383)
Q Consensus 1 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 27 (383)
||||||-- -|..--.+||+++||-+-|
T Consensus 16 ~~ag~RprgqnkerpPPVPNPDYEpIRkGqrd 47 (57)
T 2k4f_A 16 TGAGSRPRGQNKERPPPVPNPDYEPIRKGQRD 47 (57)
T ss_dssp CCCSSCCCCCCCCCCCCCCSGGGCTTCCCCCH
T ss_pred cCcCCCcccccccCCCCCCCCCcchhhcccHH
Confidence 57888743 2333345789999887655
No 2
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.46 E-value=8.6 Score=26.84 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=27.2
Q ss_pred cchhhhhh---cCCCC-----------cccHHHHHHHHHhhhhccc
Q 016781 313 DTHVAHHL---FSTMP-----------HYHAMEATKAIKPILGEYY 344 (383)
Q Consensus 313 nyH~eHHl---fP~iP-----------~y~Lp~~~~~l~~~~~~~~ 344 (383)
++|+-|.| ||.|| -+|+.++-..+.++-++|+
T Consensus 10 d~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~kYL 55 (75)
T 2dae_A 10 DFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYL 55 (75)
T ss_dssp CHHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhcccce
Confidence 68888887 89998 4789999999999999983
No 3
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=18.90 E-value=50 Score=19.45 Aligned_cols=8 Identities=13% Similarity=0.605 Sum_probs=4.8
Q ss_pred cCchHHhH
Q 016781 131 LVPYFSWK 138 (383)
Q Consensus 131 ~~p~~~wr 138 (383)
+..|-.||
T Consensus 24 g~tflywr 31 (40)
T 2l9u_A 24 GGTFLYWR 31 (40)
T ss_dssp HHHHHHHH
T ss_pred CceeEEEc
Confidence 34555777
No 4
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=17.63 E-value=2.4e+02 Score=21.20 Aligned_cols=59 Identities=7% Similarity=0.082 Sum_probs=40.8
Q ss_pred CcccHHHHHHHHHhhhhcc-cccCCccHHHHHHHH-hcccEEecCCCCCCCccEEEeecCC
Q 016781 325 PHYHAMEATKAIKPILGEY-YQFDGTPFYKAMWRE-AKECLYVEPDEGDQNKGVFWYRNKI 383 (383)
Q Consensus 325 P~y~Lp~~~~~l~~~~~~~-~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
-|.+|-++-..|.+..|++ -+..+..=+..+.+. .....+.+++.+..++.++..|.|+
T Consensus 38 GWa~Lg~vG~~L~k~~PdFDpRnYGy~kLs~Li~a~~~~FEi~~r~~~~~~~~~vyvr~~~ 98 (105)
T 2kpm_A 38 GWANLGNFGNYLNKLQPDFDSRLYGYKKLSDLVKARTDLFVTEERQVPGSTQKALYLRAKL 98 (105)
T ss_dssp SCEEHHHHHHHHHHHCTTCCGGGTTCSSHHHHHHHCTTTEEEEEEECTTCSSEEEEEEECC
T ss_pred CcEeHHHHHHHHHHhCcCCCccccCcccHHHHHHhhCCcEEEEeecCCCCCceEEEEehhc
Confidence 3667778888888888887 444444446667777 5555565667777778888887663
No 5
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=16.65 E-value=1.5e+02 Score=21.91 Aligned_cols=51 Identities=16% Similarity=0.404 Sum_probs=28.8
Q ss_pred cHHHHHHHHHhhhhcccccCCccHHHHHHHHh--ccc-EEecCCCCCCCccEEEe
Q 016781 328 HAMEATKAIKPILGEYYQFDGTPFYKAMWREA--KEC-LYVEPDEGDQNKGVFWY 379 (383)
Q Consensus 328 ~Lp~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~-~~~~~~~~~~~~~~~~~ 379 (383)
-|.++++.+.+.+| |++.....+=.++.-++ ..| ..++++.++.+||-+|-
T Consensus 24 tL~eIY~~i~~~fp-yyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~ 77 (97)
T 2hdc_A 24 TLSGICEFISNRFP-YYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWT 77 (97)
T ss_dssp CHHHHHHHHHHHCH-HHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEE
T ss_pred CHHHHHHHHHHhch-hhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEE
Confidence 46777777776664 44433333222333333 333 55677777888998773
No 6
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=16.08 E-value=2.3e+02 Score=21.09 Aligned_cols=51 Identities=18% Similarity=0.411 Sum_probs=29.2
Q ss_pred cHHHHHHHHHhhhhcccccCCccHHHHHHHHh--ccc-EEecCCCCCCCccEEEe
Q 016781 328 HAMEATKAIKPILGEYYQFDGTPFYKAMWREA--KEC-LYVEPDEGDQNKGVFWY 379 (383)
Q Consensus 328 ~Lp~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~-~~~~~~~~~~~~~~~~~ 379 (383)
-|.++++.+.+.+| |++.....+=.++.-++ ..| ..++++.+..+||-+|-
T Consensus 25 tL~eIY~~I~~~fp-yyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~ 78 (102)
T 1vtn_C 25 TLSEIYQWIMDLFP-YYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWA 78 (102)
T ss_dssp CHHHHHHHHHHHCG-GGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEE
T ss_pred cHHHHHHHHHHcCC-ccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEE
Confidence 47788888887774 45543222212333333 344 45666666778888773
No 7
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=14.68 E-value=3.2e+02 Score=20.68 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHhhhhcccccCCccHHHHHHHHh--ccc-EEecCCCCCCCccEEE
Q 016781 327 YHAMEATKAIKPILGEYYQFDGTPFYKAMWREA--KEC-LYVEPDEGDQNKGVFW 378 (383)
Q Consensus 327 y~Lp~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~-~~~~~~~~~~~~~~~~ 378 (383)
--|.++++.+.+.+| ||+.....+=.++.-++ ..| ..+.++.+..+||-+|
T Consensus 37 LtL~eIY~~I~~~fP-yyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W 90 (111)
T 2c6y_A 37 LTLNGIYTHITKNYP-YYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFW 90 (111)
T ss_dssp EEHHHHHHHHHHHCT-TSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEE
T ss_pred CcHHHHHHHHHHcCC-ccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceE
Confidence 358888888888774 55543333222333333 344 4456666677888877
No 8
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=12.59 E-value=1.3e+02 Score=22.90 Aligned_cols=50 Identities=16% Similarity=0.424 Sum_probs=27.2
Q ss_pred cHHHHHHHHHhhhhcccccCCccHHHHHHHHh--ccc-EEecCCCCCCCccEEE
Q 016781 328 HAMEATKAIKPILGEYYQFDGTPFYKAMWREA--KEC-LYVEPDEGDQNKGVFW 378 (383)
Q Consensus 328 ~Lp~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~-~~~~~~~~~~~~~~~~ 378 (383)
-|.++++.+.+.+| ||+.....+=.++.-++ ..| ..++++.++.+||-+|
T Consensus 25 tL~eIY~~I~~~fP-yyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W 77 (109)
T 2hfh_A 25 TLSGICEFISNRFP-YYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYW 77 (109)
T ss_dssp CHHHHHHHHHTTCH-HHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCB
T ss_pred cHHHHHHHHHHhcc-hhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeE
Confidence 36677777776663 44544333222333333 333 4456666777888665
No 9
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=11.05 E-value=49 Score=22.24 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=17.2
Q ss_pred cccCCCCCCCCCCCCCCCCC
Q 016781 7 MAVPSTPMKVDSDPLKRVPC 26 (383)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (383)
||||-.++|+..+-.||+..
T Consensus 4 MAVPKrK~Sksrr~~RRsh~ 23 (60)
T 2zjr_Z 4 HPVPKKKTSKSKRDMRRSHH 23 (60)
T ss_dssp CSCCSSCCCTTHHHHHTTTC
T ss_pred cccCCCCCChHHhhhhcccc
Confidence 89999999998888888774
No 10
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=10.89 E-value=3.7e+02 Score=19.49 Aligned_cols=55 Identities=11% Similarity=-0.102 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHhhhhcc-cccCCccHHHHHHHHhcccEEecCCCCCCCccEEEeecC
Q 016781 326 HYHAMEATKAIKPILGEY-YQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNK 382 (383)
Q Consensus 326 ~y~Lp~~~~~l~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (383)
|.+|-++-..|.+..|++ -+..+.+-+..+.+......+.+.+.+. .-++++|++
T Consensus 26 Wa~Lg~vG~~i~k~~PdFD~RnYGy~kLs~Li~~~~~fe~~~~~~~~--~~~i~vR~~ 81 (92)
T 2kzv_A 26 WAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLDFLTVQESRNGS--KLHSEIRLR 81 (92)
T ss_dssp SCBHHHHHHHHHHHCTTCCTTTTCSSHHHHHHHTCTTEEEEEEEETT--EEEEEEEEC
T ss_pred cEeHHHHHHHHHHhCcCCCccccCcccHHHHHHhcCcEEEEEcCCCC--ceEEEEEeC
Confidence 667777778888888887 4444555566677765433333333222 557778764
Done!