Query 016782
Match_columns 383
No_of_seqs 132 out of 529
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 03:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.9 5.3E-25 1.8E-29 176.0 8.2 86 75-160 1-86 (86)
2 3sjm_A Telomeric repeat-bindin 97.9 1.4E-05 4.7E-10 61.2 5.3 49 78-138 11-60 (64)
3 1w0t_A Telomeric repeat bindin 97.7 4.7E-05 1.6E-09 55.5 5.8 48 79-138 3-51 (53)
4 1ity_A TRF1; helix-turn-helix, 97.7 6.3E-05 2.1E-09 57.5 6.6 55 73-139 5-60 (69)
5 2cqr_A RSGI RUH-043, DNAJ homo 97.5 0.00031 1E-08 55.3 7.2 55 74-138 14-68 (73)
6 2d9a_A B-MYB, MYB-related prot 97.4 0.00017 5.8E-09 53.5 5.1 52 73-137 3-54 (60)
7 2din_A Cell division cycle 5-l 97.4 0.00053 1.8E-08 51.8 7.9 55 74-143 5-59 (66)
8 2yum_A ZZZ3 protein, zinc fing 97.4 0.00043 1.5E-08 53.4 7.4 58 73-138 3-60 (75)
9 1guu_A C-MYB, MYB proto-oncoge 97.4 0.00021 7.3E-09 51.5 4.7 47 78-137 3-49 (52)
10 1x41_A Transcriptional adaptor 97.3 0.00041 1.4E-08 51.8 6.0 51 74-137 4-54 (60)
11 2dim_A Cell division cycle 5-l 97.3 0.00039 1.3E-08 53.1 5.4 52 73-137 4-55 (70)
12 2cqq_A RSGI RUH-037, DNAJ homo 97.2 0.0015 5.1E-08 51.2 8.2 53 76-139 6-58 (72)
13 2cu7_A KIAA1915 protein; nucle 97.1 0.0011 3.9E-08 51.0 6.5 53 73-139 4-56 (72)
14 2roh_A RTBP1, telomere binding 97.1 0.0012 4E-08 56.9 7.2 57 74-139 27-83 (122)
15 2llk_A Cyclin-D-binding MYB-li 97.0 0.00078 2.7E-08 53.1 5.2 51 73-138 18-68 (73)
16 2yus_A SWI/SNF-related matrix- 97.0 0.00083 2.8E-08 53.4 5.2 48 75-136 15-62 (79)
17 2elk_A SPCC24B10.08C protein; 97.0 0.0015 5E-08 48.6 6.2 46 79-136 10-55 (58)
18 2juh_A Telomere binding protei 97.0 0.0014 4.8E-08 56.3 6.6 57 74-139 13-69 (121)
19 1gvd_A MYB proto-oncogene prot 97.0 0.00076 2.6E-08 48.6 4.2 46 79-137 4-49 (52)
20 2ckx_A NGTRF1, telomere bindin 96.8 0.0021 7.1E-08 51.7 5.8 51 80-139 2-52 (83)
21 2k9n_A MYB24; R2R3 domain, DNA 96.7 0.0031 1.1E-07 51.6 6.4 52 74-139 49-100 (107)
22 3osg_A MYB21; transcription-DN 96.6 0.0023 7.8E-08 53.9 5.1 52 74-139 58-109 (126)
23 2aje_A Telomere repeat-binding 96.5 0.0021 7.1E-08 54.0 4.3 57 74-139 9-65 (105)
24 2cjj_A Radialis; plant develop 96.4 0.0081 2.8E-07 49.3 7.1 58 78-145 8-65 (93)
25 1gv2_A C-MYB, MYB proto-oncoge 96.3 0.0025 8.4E-08 51.6 3.6 52 74-139 52-103 (105)
26 3osg_A MYB21; transcription-DN 96.3 0.0046 1.6E-07 52.0 5.1 49 75-137 8-56 (126)
27 2k9n_A MYB24; R2R3 domain, DNA 95.9 0.0089 3E-07 48.9 5.0 46 79-137 2-47 (107)
28 1x58_A Hypothetical protein 49 95.8 0.013 4.5E-07 45.3 5.0 50 78-138 8-57 (62)
29 2ltp_A Nuclear receptor corepr 94.7 0.0018 6E-08 52.2 0.0 53 74-140 12-64 (89)
30 1h8a_C AMV V-MYB, MYB transfor 95.7 0.01 3.5E-07 49.8 4.6 52 73-137 22-73 (128)
31 1gv2_A C-MYB, MYB proto-oncoge 95.7 0.0081 2.8E-07 48.6 3.8 46 79-137 5-50 (105)
32 1h8a_C AMV V-MYB, MYB transfor 95.5 0.0061 2.1E-07 51.1 2.6 51 74-138 75-125 (128)
33 3zqc_A MYB3; transcription-DNA 95.3 0.0083 2.8E-07 50.7 2.7 51 74-138 50-100 (131)
34 1h89_C C-MYB, MYB proto-oncoge 94.6 0.027 9.4E-07 48.7 4.1 52 73-137 53-104 (159)
35 1h89_C C-MYB, MYB proto-oncoge 94.3 0.02 6.8E-07 49.6 2.5 51 74-138 106-156 (159)
36 1wgx_A KIAA1903 protein; MYB D 93.6 0.052 1.8E-06 42.9 3.6 51 78-138 8-58 (73)
37 3zqc_A MYB3; transcription-DNA 93.6 0.02 6.7E-07 48.4 1.2 46 79-137 3-48 (131)
38 1ug2_A 2610100B20RIK gene prod 92.6 0.57 1.9E-05 38.9 8.5 67 71-148 26-92 (95)
39 1ign_A Protein (RAP1); RAP1,ye 91.4 0.11 3.8E-06 49.5 3.4 52 78-138 8-60 (246)
40 2eqr_A N-COR1, N-COR, nuclear 90.7 0.39 1.3E-05 35.8 5.1 44 76-133 10-53 (61)
41 3hm5_A DNA methyltransferase 1 87.9 0.96 3.3E-05 37.2 5.9 57 79-145 31-88 (93)
42 2iw5_B Protein corest, REST co 87.6 0.41 1.4E-05 45.4 3.9 48 76-137 131-178 (235)
43 2lr8_A CAsp8-associated protei 86.5 0.13 4.5E-06 40.6 0.0 58 76-145 12-69 (70)
44 1fex_A TRF2-interacting telome 79.8 1.9 6.4E-05 32.3 4.0 52 79-135 3-55 (59)
45 2xag_B REST corepressor 1; ami 78.2 3.1 0.0001 43.0 6.2 43 76-132 378-420 (482)
46 4iej_A DNA methyltransferase 1 61.2 17 0.00057 29.9 5.9 57 79-145 31-88 (93)
47 2c9l_Y EB1, zebra, BZLF1 trans 49.8 12 0.00041 28.5 2.9 20 126-145 13-32 (63)
48 2yqk_A Arginine-glutamic acid 49.0 52 0.0018 24.4 6.4 44 73-130 4-48 (63)
49 2dmt_A Homeobox protein BARH-l 45.5 95 0.0033 23.4 8.7 62 72-144 15-76 (80)
50 3lcc_A Putative methyl chlorid 41.7 35 0.0012 29.3 5.2 97 274-370 90-214 (235)
51 1wx7_A Ubiquilin 3; ubiquitin- 38.1 83 0.0028 24.7 6.5 59 262-324 17-77 (106)
52 1irz_A ARR10-B; helix-turn-hel 35.1 88 0.003 23.9 5.8 53 73-134 2-54 (64)
53 2da3_A Alpha-fetoprotein enhan 32.9 1.5E+02 0.0051 22.0 8.0 60 74-144 17-76 (80)
54 1jdw_A L-arginine\:glycine ami 30.0 80 0.0027 31.5 6.2 77 262-358 262-338 (423)
55 1ndd_A NEDD8, protein (ubiquit 29.8 1.1E+02 0.0037 21.6 5.4 47 274-324 15-61 (76)
56 2cuf_A FLJ21616 protein; homeo 29.0 1.8E+02 0.0061 22.6 7.0 67 74-146 7-83 (95)
57 1hkq_A REPA, replication prote 28.6 12 0.00041 31.2 0.0 74 261-338 42-123 (132)
58 1wlx_A Alpha-actinin 4; three- 27.0 97 0.0033 26.6 5.4 59 81-139 42-113 (129)
59 4eef_G F-HB80.4, designed hema 24.1 5.4 0.00018 31.8 -2.8 45 78-132 20-64 (74)
60 4a69_C Nuclear receptor corepr 21.1 64 0.0022 25.8 3.0 41 77-131 42-82 (94)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.91 E-value=5.3e-25 Score=176.00 Aligned_cols=86 Identities=91% Similarity=1.401 Sum_probs=81.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 016782 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAK 154 (383)
Q Consensus 75 ~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKiKd~nkgsGskk 154 (383)
++|..+|+++||++||++|++++..|..++++..+|++||+.|.++||+||+.||+.||+||++.||+++++++.+|+.+
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~ 80 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAK 80 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 46889999999999999999999999998899999999999999999999999999999999999999999988778789
Q ss_pred CcChHH
Q 016782 155 MSYYKE 160 (383)
Q Consensus 155 wpYFdE 160 (383)
|+||+|
T Consensus 81 ~~yf~e 86 (86)
T 2ebi_A 81 MSYYKE 86 (86)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 999975
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.90 E-value=1.4e-05 Score=61.19 Aligned_cols=49 Identities=24% Similarity=0.557 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 016782 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (383)
Q Consensus 78 ~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY-~RTakQCr~KWKNLKK 138 (383)
...||.+|-..|+++...+ .. .-|..||..+ ++ .||+.||++||+||++
T Consensus 11 k~~WT~eED~~L~~~V~~~----G~-----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKY----GE-----GNWAAISKNY---PFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHH----CT-----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcc----CC-----CchHHHHhhc---CCCCCCHHHHHHHHHHHhc
Confidence 4589999999999988754 11 2399999764 33 4999999999999986
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.75 E-value=4.7e-05 Score=55.46 Aligned_cols=48 Identities=27% Similarity=0.621 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 016782 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (383)
Q Consensus 79 ~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY-~RTakQCr~KWKNLKK 138 (383)
..||.+|...|+++...+ . ..-|..||..|. + .||+.||+++|.|+.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~----G-----~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKY----G-----EGNWSKILLHYK---FNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHH----C-----TTCHHHHHHHSC---CSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH----C-----cCCHHHHHHHcC---CCCCCHHHHHHHHHHHHc
Confidence 489999999999988753 1 135999999874 5 4999999999999975
No 4
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.74 E-value=6.3e-05 Score=57.53 Aligned_cols=55 Identities=24% Similarity=0.533 Sum_probs=44.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY-~RTakQCr~KWKNLKK~ 139 (383)
.+..+...||.+|-.+|+++...+ .. .-|..||..|. + .||+.||+++|.|+.+.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKY----GE-----GNWSKILLHYK---FNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHH----CS-----SCHHHHHHHSC---CSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH----CC-----CcHHHHHHHcC---cCCCCHHHHHHHHHHHcCC
Confidence 345556799999999999988753 11 25999999874 5 79999999999999863
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.46 E-value=0.00031 Score=55.35 Aligned_cols=55 Identities=16% Similarity=0.478 Sum_probs=43.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK 138 (383)
+.-....||.+|-++|+.+...+ . +....-|+.||+.|- .||..||+.+|++|..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~----g--~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQY----P--RGSSDCWDKIARCVP----SKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHS----C--SSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHc----C--CCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 33345689999999999887642 2 124578999999885 4999999999999974
No 6
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.43 E-value=0.00017 Score=53.52 Aligned_cols=52 Identities=19% Similarity=0.532 Sum_probs=41.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
.|.-....||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFG---------QQDWKFLASHFP----NRTDQQCQYRWLRVL 54 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTC---------TTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence 4555667999999999999887631 135999999974 499999999998764
No 7
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00053 Score=51.81 Aligned_cols=55 Identities=18% Similarity=0.503 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHh
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKT 143 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKi 143 (383)
|.-....||.+|-..||++... +. .-|..||. |. | ||+.||+++|.++.+.-.+.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~----~g------~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKL----MP------TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHH----CT------TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----cC------CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhcC
Confidence 5555668999999999998553 21 25999999 64 4 99999999999998765443
No 8
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00043 Score=53.43 Aligned_cols=58 Identities=10% Similarity=0.331 Sum_probs=44.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK 138 (383)
.|.-....||.+|-..|+++... |........-|..||..|. .||+.||+.+|.+...
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~ 60 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG----NRTAKQVASQVQKYFI 60 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 45666679999999999998764 3222233478999999995 5999999999965543
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.35 E-value=0.00021 Score=51.45 Aligned_cols=47 Identities=21% Similarity=0.585 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 78 ~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
...||.+|-..|+++...+ .. .-|..||..|. .||+.||+.+|.++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN----GT-----DDWKVIANYLP----NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH----CS-----SCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh----CC-----CCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 3589999999999998764 11 25999999974 599999999999875
No 10
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.31 E-value=0.00041 Score=51.79 Aligned_cols=51 Identities=12% Similarity=0.355 Sum_probs=40.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
+.-....||.+|-..||++...+ .. .-|..||..|. .||+.||+.+|.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~----~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDC----GF-----GNWQDVANQMC----TKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHT----CT-----TCHHHHHHHHT----TSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----Cc-----CcHHHHHHHhC----CCCHHHHHHHHHHHc
Confidence 33345689999999999987653 11 35999999995 499999999998764
No 11
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.00039 Score=53.15 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=41.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
.|.-+...||.+|-..|+.+...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYG---------KNQWSRIASLLH----RKSAKQCKARWYEWL 55 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTC---------SSCHHHHHHHST----TCCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHhc----CCCHHHHHHHHHHHc
Confidence 3555667999999999999887531 135999999985 699999999998854
No 12
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.19 E-value=0.0015 Score=51.21 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016782 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 76 kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~ 139 (383)
.....||.+|-++|+.+.. .|.... ..-|+.||+.| | ||.+||+.+|+.|++.
T Consensus 6 ~~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 3355899999999998876 343222 35699999998 4 9999999999999765
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.08 E-value=0.0011 Score=50.97 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=43.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~ 139 (383)
.|.-....||.+|-..||++...+- .-|..||..|. .||..||+++|.++.+.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G----------~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFG----------RRWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 3555567999999999999887631 16999999885 49999999999988764
No 14
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.08 E-value=0.0012 Score=56.90 Aligned_cols=57 Identities=18% Similarity=0.375 Sum_probs=43.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~ 139 (383)
..+....||.+|..+|++....+ .. .-|..|+..+-..=-.||+.||++||+||.+.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHL----GT-----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH----SS-----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CC-----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34446699999999999988864 11 25999998653211259999999999999974
No 15
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.03 E-value=0.00078 Score=53.09 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=41.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK 138 (383)
.|.-....||.+|-..||++..++ + + -|..||..| .||+.||+++|+.|++
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~-----G---~--kW~~IA~~l-----gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKH-----G---N--DWATIGAAL-----GRSASSVKDRCRLMKD 68 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHH-----S---S--CHHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-----C---C--CHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 466566799999999999998753 1 1 199999998 3999999999998865
No 16
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.00 E-value=0.00083 Score=53.35 Aligned_cols=48 Identities=19% Similarity=0.468 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016782 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (383)
Q Consensus 75 ~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNL 136 (383)
......||.+|..+||++... |. .-|..||+.|. .||+.||+.+|.+|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~----~G------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEM----YK------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHH----SS------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHH----hC------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 344679999999999998764 22 35999999985 59999999999876
No 17
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.00 E-value=0.0015 Score=48.62 Aligned_cols=46 Identities=24% Similarity=0.438 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016782 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (383)
Q Consensus 79 ~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNL 136 (383)
..||.+|-..|+++...+ . ..-|..||..|. -.||+.||+.+|.++
T Consensus 10 ~~WT~eED~~L~~~v~~~----G-----~~~W~~IA~~~~---~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETL----G-----LGNWADIADYVG---NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHT----T-----TTCHHHHHHHHC---SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH----C-----cCCHHHHHHHHC---CCCCHHHHHHHHHHH
Confidence 379999999999988753 1 145999999984 259999999999875
No 18
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.96 E-value=0.0014 Score=56.34 Aligned_cols=57 Identities=16% Similarity=0.347 Sum_probs=44.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~ 139 (383)
+......||.+|..+|++....+- . .-|..|+..+...--.||..||++||+||.+.
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G----~-----G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLG----T-----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHG----G-----GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC----C-----CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 445566999999999999888642 1 36999998874311259999999999999985
No 19
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.96 E-value=0.00076 Score=48.60 Aligned_cols=46 Identities=24% Similarity=0.653 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 79 ~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
..||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYG---------PKRWSVIAKHLK----GRIGKQCRERWHNHL 49 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHC---------TTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHC---------cChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 4899999999999887531 135999999874 599999999998753
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.78 E-value=0.0021 Score=51.75 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016782 80 TWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 80 ~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~ 139 (383)
.||.+|..+|++....+ .. .-|..|+...-..=-.||+.||++||+||.+.
T Consensus 2 ~WT~eEd~~L~~gv~k~----G~-----g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL----GT-----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHH----CS-----SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----CC-----CCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 69999999999988753 11 25999988521100259999999999999874
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.68 E-value=0.0031 Score=51.60 Aligned_cols=52 Identities=23% Similarity=0.502 Sum_probs=43.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~ 139 (383)
|.-....||.+|-..||.+...+- .-|..||..|. .||..||+++|.+|.+.
T Consensus 49 p~i~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 49 PALRTDPWSPEEDMLLDQKYAEYG----------PKWNKISKFLK----NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHHHhC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence 444556999999999999887641 24999999884 59999999999999876
No 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.59 E-value=0.0023 Score=53.92 Aligned_cols=52 Identities=17% Similarity=0.448 Sum_probs=42.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~ 139 (383)
|.-....||.+|-..|+.+..++- .-|..||..|. .||..||+++|.+|.+.
T Consensus 58 p~~~~~~WT~eEd~~L~~~v~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 58 PSISHTPWTAEEDALLVQKIQEYG----------RQWAIIAKFFP----GRTDIHIKNRWVTISNK 109 (126)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence 444456899999999999987752 13999998764 59999999999999875
No 23
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.52 E-value=0.0021 Score=54.00 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=42.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~ 139 (383)
+.+....||.+|..+|++....+ .. .-|..|+..+-..=-.||..+|++||+||.+.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKL----GT-----GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHH----CS-----SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh----CC-----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 44556699999999999988753 11 25999987532100259999999999999974
No 24
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.41 E-value=0.0081 Score=49.26 Aligned_cols=58 Identities=12% Similarity=0.376 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcc
Q 016782 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH 145 (383)
Q Consensus 78 ~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKiKd 145 (383)
...||.+|-++|+.+... |.. ....-|+.||+.|- .||..||+.+|++|...-+.++.
T Consensus 8 ~~~WT~eEd~~L~~al~~----~~~--~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~ies 65 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----YDK--DTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIES 65 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----SCT--TCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH----cCC--CCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhc
Confidence 347999999999988764 221 13467999999985 39999999999999987666543
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.32 E-value=0.0025 Score=51.65 Aligned_cols=52 Identities=17% Similarity=0.606 Sum_probs=41.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~ 139 (383)
|.-....||.+|-..|+.+...+- .-|..||..|. .||..||+++|.+|.+.
T Consensus 52 p~~~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 52 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHS----------SCHHHHHTTCT----TCCHHHHHHHHHHHTC-
T ss_pred CcccccCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 444566899999999999987641 24999998763 59999999999998653
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.27 E-value=0.0046 Score=52.04 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 75 ~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
..+...||.+|-..|+.+...+- .-|..||..|. .||+.||+.+|.|..
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G----------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHG----------SDWKMIAATFP----NRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHT----------TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence 33455899999999999987641 14999998874 599999999999865
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.90 E-value=0.0089 Score=48.86 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 79 ~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
..||.+|-..|+.+...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYG---------AKDWIRISQLMI----TRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHC---------SSCHHHHHHHTT----TSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHC---------CCCHHHHhhhcC----CCCHHHHHHHHHHHH
Confidence 3799999999999987642 135999999885 599999999998754
No 28
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.76 E-value=0.013 Score=45.25 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016782 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (383)
Q Consensus 78 ~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK 138 (383)
...||.+|+..||+...++ + .-|..|+..-.- =-.||....++||+||.+
T Consensus 8 r~~WT~EE~~~L~~gV~k~-----G-----~~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTM-----G-----NHWNSILWSFPF-QKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHH-----C-----SCHHHHHHHSCC-CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH-----h-----HhHHHHHHhCCC-ccCcccchHHHHHHHHHh
Confidence 4599999999999998864 1 249999875321 115999999999999986
No 29
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=94.70 E-value=0.0018 Score=52.20 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEF 140 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~Y 140 (383)
|.-....||.+|-.+||++...+ + .-|..||..|. .||..||++.|.++.+.+
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~-----G-----~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEH-----G-----RNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 44445689999999999988763 1 23999999986 599999999999988764
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.67 E-value=0.01 Score=49.76 Aligned_cols=52 Identities=21% Similarity=0.613 Sum_probs=40.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
.|.-....||.+|...|+.+...+- . .-|..||..|. .||+.||+.+|.+..
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g----~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYG----P-----KRWSDIAKHLK----GRIGKQCRERWHNHL 73 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTC----S-----CCHHHHHHHSS----SCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC----C-----CCHHHHHHHhc----CCcHHHHHHHHHHhc
Confidence 3444556899999999999887531 1 24999999874 599999999998754
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.66 E-value=0.0081 Score=48.56 Aligned_cols=46 Identities=22% Similarity=0.629 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 79 ~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
..||.+|-..|+.+...+-. .-|..||..|. .||+.||+.+|.+..
T Consensus 5 ~~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGP---------KRWSVIAKHLK----GRIGKQCRERWHNHL 50 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCT---------TCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------CcHHHHhhhhc----CCCHHHHHHHHHhcc
Confidence 47999999999999875411 24999999874 599999999998853
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.51 E-value=0.0061 Score=51.13 Aligned_cols=51 Identities=18% Similarity=0.623 Sum_probs=41.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK 138 (383)
|.-....||.+|-..|+.+...+- .-|..||..|. .||..||+++|++|.+
T Consensus 75 p~~~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 75 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SSSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred cccccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 444566899999999999987642 24999998763 5999999999998864
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.27 E-value=0.0083 Score=50.70 Aligned_cols=51 Identities=14% Similarity=0.424 Sum_probs=40.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK 138 (383)
|.-....||.+|-..||.+...+- .-|..||..|. .||..||+++|.++.+
T Consensus 50 p~~~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 50 PAVVKHAWTPEEDETIFRNYLKLG----------SKWSVIAKLIP----GRTDNAIKNRWNSSIS 100 (131)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHSC----------SCHHHHTTTST----TCCHHHHHHHHHHTTG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 444455899999999999887532 13999998764 5999999999998765
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.55 E-value=0.027 Score=48.70 Aligned_cols=52 Identities=21% Similarity=0.591 Sum_probs=40.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
.|.-....||.+|-..|+.+...+- . .-|..||..|. .||+.||+.+|.+..
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g----~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYG----P-----KRWSVIAKHLK----GRIGKQCRERWHNHL 104 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHC----S-----CCHHHHHHTST----TCCHHHHHHHHHHTT
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhC----c-----ccHHHHHHHcC----CCCHHHHHHHHHHHh
Confidence 3555567999999999999887531 1 24999999874 599999999998754
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.26 E-value=0.02 Score=49.59 Aligned_cols=51 Identities=18% Similarity=0.616 Sum_probs=41.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK 138 (383)
|.-....||.+|-..||++...+- .-|..||..|. .||..||+++|+.|.+
T Consensus 106 p~~~~~~WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 106 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred ccccccCCChHHHHHHHHHHHHHC----------CCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 444567899999999999987642 24999998763 5999999999998764
No 36
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.64 E-value=0.052 Score=42.93 Aligned_cols=51 Identities=20% Similarity=0.431 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016782 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (383)
Q Consensus 78 ~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK 138 (383)
...||.+|.++|...... |.. ....-|+.||+.+- .||..+|..+++.|.+
T Consensus 8 ~~~WT~eE~k~fe~ALa~----~~~--~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFAS----LPK--HKPGFWSEVAAAVG----SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHH----SCS--SSSSHHHHHHHHTT----TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHH----CCC--CCccHHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 457999999999887653 322 23468999999875 2999999988777643
No 37
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=93.57 E-value=0.02 Score=48.38 Aligned_cols=46 Identities=24% Similarity=0.620 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 79 ~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
..||.+|-..|+.+...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 3 g~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENG---------PQNWPRITSFLP----NRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHC---------SCCGGGGTTSCT----TSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC---------cCCHHHHHHHHC----CCCHHHHHHHHhhcc
Confidence 3799999999999887641 124999998874 599999999998865
No 38
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=92.64 E-value=0.57 Score=38.88 Aligned_cols=67 Identities=16% Similarity=0.470 Sum_probs=54.7
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcccCC
Q 016782 71 VRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDR 148 (383)
Q Consensus 71 ~~~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKiKd~nk 148 (383)
.+.+.+...-||.++-+.+|..+.+ .....+.|..||.+|. +|++.|.+++|..|.+-|.+......
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~-------~G~s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~~~~~~~~ 92 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQE-------QGAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTACESGP 92 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHH-------TTSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred ecCCCCEEEEeccccCHHHHHHHHh-------cCCChhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 4556777889999999988876654 3455678999999997 69999999999999999998866543
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=91.42 E-value=0.11 Score=49.45 Aligned_cols=52 Identities=13% Similarity=0.336 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCC-chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016782 78 AETWVQDETRILIAFRREMDGLFNTSKS-NKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (383)
Q Consensus 78 ~~~WTdeETkaLI~Lw~E~e~~F~sskr-nkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK 138 (383)
...||.+|-..||++...+-. ++ ..+.|.+||..|. .||+.||+++|+++.+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn-----~r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPT-----RRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGG-----GTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHHHhCc-----CccccccHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 348999999999998886322 23 3456999998766 5999999999999664
No 40
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.74 E-value=0.39 Score=35.80 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=35.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016782 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKW 133 (383)
Q Consensus 76 kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KW 133 (383)
+....||.+|..+|++....+ .+-|..||..|. .||..||...|
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~----------gk~w~~Ia~~l~----~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQH----------PKNFGLIASYLE----RKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHS----------TTCHHHHHHHCT----TSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHH
Confidence 457899999999999888753 236999997664 59999998655
No 41
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=87.89 E-value=0.96 Score=37.21 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHhcc
Q 016782 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLKEFKKTKH 145 (383)
Q Consensus 79 ~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY-~RTakQCr~KWKNLKK~YKKiKd 145 (383)
..||.+||..|+++..+.+. -|-.|+.++.-.++ .||.++.+.++-.+.+...+.+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----------RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999987543 36677777754443 59999999999999998887763
No 42
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=87.57 E-value=0.41 Score=45.36 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016782 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (383)
Q Consensus 76 kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLK 137 (383)
+....||++|...+++....+- +-|..||+.|. .||..||+.-|-+-+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG----------KDW~~IAk~Vg----TKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG----------RDFQAISDVIG----NKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS----------SCHHHHHHHHS----SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 4467999999999998776531 12999999875 599999998775433
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=86.55 E-value=0.13 Score=40.57 Aligned_cols=58 Identities=19% Similarity=0.501 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcc
Q 016782 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH 145 (383)
Q Consensus 76 kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKiKd 145 (383)
....-||.+|-+.+|....+ .....+.|..||.+| +||+.|..++|..|.+-|++.|.
T Consensus 12 e~vvlWTReeDR~IL~~cq~-------~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk~ 69 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQK-------RGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSKC 69 (70)
Confidence 34567999888877765543 345558899999887 49999999999999999998764
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=79.83 E-value=1.9 Score=32.25 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHH-HHHHcCCCCCHHHHHHHHHH
Q 016782 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISA-KMREKGFDRSPTMCTDKWRN 135 (383)
Q Consensus 79 ~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~-kM~ekGY~RTakQCr~KWKN 135 (383)
..+|.+|=..|++.-.++.. ........++|+++++ .+ -+.|.++|+++|.+
T Consensus 3 ~~FT~edD~~L~~~v~~~~~-~~~~~~Gn~iwk~la~~~~----~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENAR-SPSSVTGNALWKAMEKSSL----TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCC-STTTTTSSHHHHHHHHSCS----SSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcc-ccCCCccHHHHHHHHHhHC----CCCCHHHHHHHHHH
Confidence 47999999999998876533 1122356699999987 43 36899999999875
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=78.23 E-value=3.1 Score=43.03 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=34.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016782 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDK 132 (383)
Q Consensus 76 kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~K 132 (383)
+....||.+|..++++....+ + +-|..|+..+. .||..||+.=
T Consensus 378 ~~~~~WT~eE~~~f~~al~~y-----G-----kdw~~IA~~Vg----TKT~~Qvk~f 420 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKY-----G-----RDFQAISDVIG----NKSVVQVKNF 420 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH-----T-----TCHHHHHHHHS----SCCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH-----C-----cCHHHHHHHhC----CCCHHHHHHH
Confidence 557899999999999876642 1 23999999976 6899999973
No 46
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=61.24 E-value=17 Score=29.95 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHhcc
Q 016782 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKG-FDRSPTMCTDKWRNLLKEFKKTKH 145 (383)
Q Consensus 79 ~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekG-Y~RTakQCr~KWKNLKK~YKKiKd 145 (383)
..||.+||..|+++..+.+-+ |-.|+.+..-.+ -.||.++.+.++-.+.+.--+++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR----------w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCCC----------eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 379999999999999875433 444554443222 368888888888777777666654
No 47
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=49.76 E-value=12 Score=28.47 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 016782 126 PTMCTDKWRNLLKEFKKTKH 145 (383)
Q Consensus 126 akQCr~KWKNLKK~YKKiKd 145 (383)
...|+-||+||.+.|+.+-.
T Consensus 13 srk~rakfkn~lqh~r~vaa 32 (63)
T 2c9l_Y 13 ARKSRAKFKQLLQHYREVAA 32 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999853
No 48
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.01 E-value=52 Score=24.38 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHH-HHHcCCCCCHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAK-MREKGFDRSPTMCT 130 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~k-M~ekGY~RTakQCr 130 (383)
.|......||.+|..++.+....+- +-|..|+.. |. .+|..||.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG----------Kdf~~I~~~~v~----~Kt~~~~v 48 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG----------KNFFRIRKELLP----NKETGELI 48 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC----------SCHHHHHHHSCT----TSCHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC----------ccHHHHHHHHcC----CCcHHHHH
Confidence 3555567999999988877655421 128888875 33 58999995
No 49
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.52 E-value=95 Score=23.38 Aligned_cols=62 Identities=8% Similarity=0.004 Sum_probs=42.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 016782 72 RAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTK 144 (383)
Q Consensus 72 ~~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKiK 144 (383)
+.+.+....++.+.+..|-..+.. ........=+.||..|. .+..|++..|.|=...+|+.+
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~------~~yp~~~~r~~LA~~l~-----L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEK------QKYLSTPDRIDLAESLG-----LSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHH------CSSCCHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHhC-----CCHHHeeeccHHHHHHhhccc
Confidence 334444567999988888777754 11234444556666653 789999999999888777654
No 50
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=41.75 E-value=35 Score=29.31 Aligned_cols=97 Identities=10% Similarity=0.005 Sum_probs=52.0
Q ss_pred eeecccCChHHHHHHHHHhhc--ccccceeecc--------------------------ccchhhhhcccCCCCcceeEe
Q 016782 274 RRIGIDGTPDAIKEAIKSAFG--IRTKRAFWLE--------------------------DEDQIVRCIDRDMPVGNYTLH 325 (383)
Q Consensus 274 ~r~g~~g~~~~~~~~~~~~~~--~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~ 325 (383)
+-+|||-++.+|+.|-+.+-. +..+=.|... +-..+++.+-|=+..|-+.+.
T Consensus 90 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 169 (235)
T 3lcc_A 90 FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELIT 169 (235)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEE
Confidence 357999999999988765432 1111112211 112233333333333444443
Q ss_pred ecCCCCccccccceecchhhHHHHHHhhccccceeccCcccccCc
Q 016782 326 LDEDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNM 370 (383)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (383)
++-..-........+++.++++..|.+.||..++-..-++.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 214 (235)
T 3lcc_A 170 LMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPHAIPTR 214 (235)
T ss_dssp EECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTTCCTTT
T ss_pred EEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCCccccc
Confidence 332111111122345899999999999999987655544444443
No 51
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=38.07 E-value=83 Score=24.70 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=38.9
Q ss_pred ceEEEEeec--ccceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceeE
Q 016782 262 GKVISVKCG--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTL 324 (383)
Q Consensus 262 g~~~~~~~~--~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (383)
---|.||+- .++-.+--+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|-+
T Consensus 17 ~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~gi 77 (106)
T 1wx7_A 17 LIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG----KILKDPDSLAQCGV 77 (106)
T ss_dssp EEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETT----EECCTTSCHHHHTC
T ss_pred eEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCcCcHHHcCC
Confidence 345777763 355556667889999999999998866655444332 23555667776643
No 52
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=35.13 E-value=88 Score=23.91 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016782 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134 (383)
Q Consensus 73 ~p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWK 134 (383)
++.+....||.+.-..+++....+- ..+..++.|.+.|...| .|..|++.-.-
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-------~~~AtPk~Il~~M~v~g--LT~~~VkSHLQ 54 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-------VERAVPKKILDLMNVDK--LTRENVASHLQ 54 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-------TTTCCHHHHHHHHCCTT--CCHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-------CCCCCcHHHHHHcCCCC--CCHHHHHHHHH
Confidence 4566678999999999998877532 23467888888887554 68777776543
No 53
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=32.92 E-value=1.5e+02 Score=21.96 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTK 144 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~KWKNLKK~YKKiK 144 (383)
+.+....+|.+....|-..+.. ........=++||..|. .+..|++..|.|=...+|+..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~------~~yp~~~~r~~La~~l~-----l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL------DSNPTRKMLDHIAHEVG-----LKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH------CSSCCHHHHHHHHHHHT-----SCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHC-----cCHHHhHHHhHHHHHhHhhhc
Confidence 3344557888888877666543 12244455566777653 889999999999998887753
No 54
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=30.03 E-value=80 Score=31.50 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=54.8
Q ss_pred ceEEEEeecccceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceeEeecCCCCccccccceec
Q 016782 262 GKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEDHISVHTEDKTFY 341 (383)
Q Consensus 262 g~~~~~~~~~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (383)
|+++.|-.|.-| +.++|.+ ++..|+- ..+-.||+-.| +.+|-|-++.-.++++.+-++.+.-
T Consensus 262 G~~llvg~s~Rt-------n~~~ie~-L~~~L~~-~~~Vi~l~~~d------~~~~HLDtv~~~v~~~~vlv~~~~~--- 323 (423)
T 1jdw_A 262 GRDIFAQRSQVT-------NYLGIEW-MRRHLAP-DYRVHIISFKD------PNPMHIDATFNIIGPGIVLSNPDRP--- 323 (423)
T ss_dssp TTEEEECCCSSC-------CHHHHHH-HHHHHTT-TCEEEECCBSS------CCSSCSTTTEEEEETTEEEECTTSC---
T ss_pred CCEEEEEecccC-------CHHHHHH-HHHHhCC-CCEEEEEecCC------CCCCchhheEEecCCCeEEEecchh---
Confidence 556666555433 6788886 8888864 46788998543 4578887888888888887775432
Q ss_pred chhhHHHHHHhhccccc
Q 016782 342 TEEDYREFLARHGWTCL 358 (383)
Q Consensus 342 ~~~~~~~~~~~~~~~~~ 358 (383)
+.+.+.|..+||..+
T Consensus 324 --~~~~~~L~~~~~~iI 338 (423)
T 1jdw_A 324 --CHQIDLFKKAGWTII 338 (423)
T ss_dssp --BTTHHHHHHTTCEEE
T ss_pred --HHHHHHHHhCCCEEE
Confidence 367888988888765
No 55
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=29.77 E-value=1.1e+02 Score=21.58 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=31.9
Q ss_pred eeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceeE
Q 016782 274 RRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTL 324 (383)
Q Consensus 274 ~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (383)
-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+.+|..|-+
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g----~~L~d~~tL~~~~i 61 (76)
T 1ndd_A 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADYKI 61 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBGGGGTC
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEECC----EECCCCCcHHHcCC
Confidence 344456688999999999998876655444332 23566778887754
No 56
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.95 E-value=1.8e+02 Score=22.59 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=47.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHH----HcCCC------CCHHHHHHHHHHHHHHHHHh
Q 016782 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMR----EKGFD------RSPTMCTDKWRNLLKEFKKT 143 (383)
Q Consensus 74 p~kR~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~----ekGY~------RTakQCr~KWKNLKK~YKKi 143 (383)
+.+....|+..++..|-..|.. ........=++||..|. +.|.. .+..|++..|.|=....|+.
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~------~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE------NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH------CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 3344568999998888777764 22345566677777776 22332 89999999999999888877
Q ss_pred ccc
Q 016782 144 KHQ 146 (383)
Q Consensus 144 Kd~ 146 (383)
...
T Consensus 81 ~~~ 83 (95)
T 2cuf_A 81 ANI 83 (95)
T ss_dssp HHC
T ss_pred hhc
Confidence 543
No 57
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=28.56 E-value=12 Score=31.18 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=50.1
Q ss_pred CceEEEEeecccceeecccCCh--HHHHHHHHHhhcccccceee-ccccchhh-----hhcccCCCCcceeEeecCCCCc
Q 016782 261 GGKVISVKCGDYTRRIGIDGTP--DAIKEAIKSAFGIRTKRAFW-LEDEDQIV-----RCIDRDMPVGNYTLHLDEDHIS 332 (383)
Q Consensus 261 ~g~~~~~~~~~~t~r~g~~g~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 332 (383)
.+.++.|...||.+..||+... ..||+|+++.+ +|.|+ +++++.++ ...+=.---|..+|.+.++-+|
T Consensus 42 ~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~----~r~~~~i~~~~~~~~~~wv~~~~Y~~~~G~v~i~fs~~i~P 117 (132)
T 1hkq_A 42 KDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLF----NRDIRRYVKGKVVERMRWVFHVKYREGQGCVELGFSPTIIP 117 (132)
T ss_dssp GGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHH----TCCEEEEETTEEEEEECSEEEEEEETTTTEEEEEECTTTTT
T ss_pred CCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHh----hCeEEEEecCCcEEEEEEEEEEEEEcCceEEEEEECHHHHH
Confidence 4678999999999999998654 67788888776 57888 88765432 2222222236777777777666
Q ss_pred cccccc
Q 016782 333 VHTEDK 338 (383)
Q Consensus 333 ~~~~~~ 338 (383)
.=++=|
T Consensus 118 yl~~Lk 123 (132)
T 1hkq_A 118 HLTMLH 123 (132)
T ss_dssp THHHHH
T ss_pred HHHHHh
Confidence 554433
No 58
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=27.05 E-value=97 Score=26.64 Aligned_cols=59 Identities=12% Similarity=0.266 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHH----cC--------CC-CCHHHHHHHHHHHHHH
Q 016782 81 WVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMRE----KG--------FD-RSPTMCTDKWRNLLKE 139 (383)
Q Consensus 81 WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~e----kG--------Y~-RTakQCr~KWKNLKK~ 139 (383)
=|-+|+..|+.....+...+.........-..|+..|.+ .| |. .|......||++|.+-
T Consensus 42 ~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~l 113 (129)
T 1wlx_A 42 HTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQL 113 (129)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHH
Confidence 367889999887776655554433333334334444443 34 43 5789999999999875
No 59
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=24.11 E-value=5.4 Score=31.75 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016782 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDK 132 (383)
Q Consensus 78 ~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~K 132 (383)
+..||.+|-++|-..... |. +....-|+.||+.+- | ||..+|+..
T Consensus 20 s~~WT~eE~K~FE~ALa~----yp--~~tpdRWekIA~~Vp--G--KT~eEVk~h 64 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSF----TN--KDTPDRWKKVAQYVK--G--RTPEEVKKH 64 (74)
T ss_dssp --CCCTTHHHHHHHHTSS----SC--SSCCSSSTTTGGGSC--S--SCHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHH----CC--CCCCcHHHHHHHHcC--C--CCHHHHHHH
Confidence 568999999888665432 22 223577999998875 3 999999753
No 60
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=21.10 E-value=64 Score=25.85 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHH
Q 016782 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTD 131 (383)
Q Consensus 77 R~~~WTdeETkaLI~Lw~E~e~~F~sskrnkkVWEeIS~kM~ekGY~RTakQCr~ 131 (383)
....||.+|..++.+.+..+ .+-|..|+..|. .||..||-.
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l~----~Kt~~~cV~ 82 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQH----------PKNFGLIASFLE----RKTVAECVL 82 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTCT----TCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHcC----CCCHHHHHH
Confidence 36789999998888776642 234788866553 699999973
Done!