Query 016783
Match_columns 383
No_of_seqs 237 out of 1646
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08163 MPP_Cdc1 Saccharomyces 100.0 3.3E-46 7.1E-51 348.2 23.9 241 56-326 1-257 (257)
2 KOG3662 Cell division control 100.0 5.6E-36 1.2E-40 288.0 16.9 301 15-340 15-334 (410)
3 cd08166 MPP_Cdc1_like_1 unchar 100.0 3.6E-29 7.8E-34 221.6 15.7 163 56-326 1-195 (195)
4 cd07395 MPP_CSTP1 Homo sapiens 100.0 1.3E-27 2.9E-32 224.6 26.9 245 51-340 3-254 (262)
5 PRK11148 cyclic 3',5'-adenosin 99.9 7E-26 1.5E-30 214.4 25.9 239 49-352 11-263 (275)
6 cd07396 MPP_Nbla03831 Homo sap 99.9 2.1E-25 4.6E-30 210.2 23.0 232 53-340 1-263 (267)
7 cd07402 MPP_GpdQ Enterobacter 99.9 4.5E-24 9.8E-29 197.7 23.1 222 54-339 1-238 (240)
8 cd07384 MPP_Cdc1_like Saccharo 99.9 2E-24 4.3E-29 190.0 14.2 89 56-144 1-101 (171)
9 cd08165 MPP_MPPE1 human MPPE1 99.9 1E-23 2.2E-28 182.8 14.6 155 56-326 1-156 (156)
10 cd08164 MPP_Ted1 Saccharomyces 99.9 1.2E-23 2.7E-28 186.0 13.7 90 56-146 1-114 (193)
11 cd07378 MPP_ACP5 Homo sapiens 99.9 2.7E-21 5.9E-26 183.1 21.1 232 53-346 1-271 (277)
12 cd00839 MPP_PAPs purple acid p 99.9 5.6E-21 1.2E-25 182.4 22.7 232 51-339 3-271 (294)
13 cd07401 MPP_TMEM62_N Homo sapi 99.9 1.3E-20 2.9E-25 176.4 18.9 197 55-306 2-212 (256)
14 PLN02533 probable purple acid 99.9 8.6E-20 1.9E-24 182.2 23.5 207 50-320 137-357 (427)
15 cd07399 MPP_YvnB Bacillus subt 99.8 3.4E-19 7.4E-24 162.5 18.2 200 53-346 1-209 (214)
16 cd00842 MPP_ASMase acid sphing 99.8 2.1E-18 4.6E-23 165.0 19.1 208 82-332 56-296 (296)
17 cd07393 MPP_DR1119 Deinococcus 99.8 6.1E-18 1.3E-22 156.2 21.0 209 55-325 1-230 (232)
18 cd07392 MPP_PAE1087 Pyrobaculu 99.7 1.1E-16 2.3E-21 142.3 18.4 176 55-307 1-176 (188)
19 TIGR03729 acc_ester putative p 99.7 2.2E-16 4.8E-21 146.4 19.0 212 54-319 1-236 (239)
20 PTZ00422 glideosome-associated 99.7 9.6E-16 2.1E-20 149.2 22.1 228 51-339 25-307 (394)
21 COG1409 Icc Predicted phosphoh 99.7 1.1E-15 2.4E-20 145.1 21.6 189 53-305 1-194 (301)
22 cd07383 MPP_Dcr2 Saccharomyces 99.7 4.8E-16 1E-20 140.2 17.0 86 52-141 2-87 (199)
23 PRK11340 phosphodiesterase Yae 99.7 4.5E-16 9.7E-21 147.0 16.6 81 49-144 46-126 (271)
24 TIGR03767 P_acnes_RR metalloph 99.7 7.5E-15 1.6E-19 145.1 23.3 130 167-339 292-432 (496)
25 KOG1378 Purple acid phosphatas 99.7 1E-15 2.2E-20 149.3 16.5 196 49-307 144-347 (452)
26 cd07400 MPP_YydB Bacillus subt 99.6 3.7E-15 8E-20 127.1 14.3 80 55-142 1-80 (144)
27 PF00149 Metallophos: Calcineu 99.6 2.1E-16 4.6E-21 135.7 5.6 78 53-143 1-78 (200)
28 cd07388 MPP_Tt1561 Thermus the 99.6 2.9E-13 6.4E-18 123.6 23.8 205 52-339 4-219 (224)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.6 1.5E-14 3.3E-19 132.0 14.4 88 54-145 1-91 (223)
30 cd07404 MPP_MS158 Microscilla 99.5 1.5E-13 3.3E-18 120.2 13.1 67 55-142 1-67 (166)
31 KOG2679 Purple (tartrate-resis 99.5 7E-13 1.5E-17 120.3 16.7 225 49-325 40-279 (336)
32 PF12850 Metallophos_2: Calcin 99.5 5.1E-13 1.1E-17 114.9 14.1 56 283-339 100-156 (156)
33 PHA02546 47 endonuclease subun 99.5 6.7E-12 1.5E-16 122.3 22.7 88 53-145 1-91 (340)
34 cd07385 MPP_YkuE_C Bacillus su 99.5 3.7E-13 8E-18 123.1 12.1 77 52-145 1-78 (223)
35 KOG1432 Predicted DNA repair e 99.4 1E-11 2.3E-16 116.4 19.1 89 49-143 50-147 (379)
36 PRK05340 UDP-2,3-diacylglucosa 99.4 2.1E-12 4.5E-17 120.0 14.3 110 53-182 1-114 (241)
37 TIGR00583 mre11 DNA repair pro 99.4 1.3E-11 2.8E-16 122.1 20.5 92 51-144 2-124 (405)
38 COG2129 Predicted phosphoester 99.4 5.1E-11 1.1E-15 106.5 21.2 214 51-339 2-217 (226)
39 TIGR00040 yfcE phosphoesterase 99.4 2.8E-11 6E-16 105.0 18.5 55 285-340 99-154 (158)
40 cd07394 MPP_Vps29 Homo sapiens 99.4 6.2E-11 1.3E-15 104.9 20.5 66 285-353 99-169 (178)
41 TIGR03768 RPA4764 metallophosp 99.4 6E-11 1.3E-15 116.5 19.3 139 168-339 294-451 (492)
42 cd07379 MPP_239FB Homo sapiens 99.3 3.3E-11 7.1E-16 101.8 14.3 62 54-142 1-62 (135)
43 COG1408 Predicted phosphohydro 99.3 1.1E-11 2.4E-16 117.2 12.1 80 49-145 41-120 (284)
44 TIGR01854 lipid_A_lpxH UDP-2,3 99.3 2.7E-10 5.8E-15 105.2 18.1 41 281-321 174-217 (231)
45 cd00841 MPP_YfcE Escherichia c 99.3 2E-10 4.3E-15 99.1 15.9 52 286-338 96-148 (155)
46 cd07397 MPP_DevT Myxococcus xa 99.2 3.1E-10 6.6E-15 104.2 16.4 65 53-145 1-65 (238)
47 PF14582 Metallophos_3: Metall 99.2 1.1E-09 2.3E-14 97.9 18.7 215 53-340 6-249 (255)
48 PRK09453 phosphodiesterase; Pr 99.2 7E-10 1.5E-14 98.6 16.6 45 291-336 117-162 (182)
49 COG2908 Uncharacterized protei 99.2 2.4E-11 5.2E-16 109.7 5.4 206 56-321 1-215 (237)
50 cd07398 MPP_YbbF-LpxH Escheric 99.1 6.4E-11 1.4E-15 107.8 5.6 114 56-186 1-118 (217)
51 cd00838 MPP_superfamily metall 99.1 7.3E-10 1.6E-14 91.1 10.5 69 56-141 1-69 (131)
52 PRK04036 DNA polymerase II sma 99.1 9.7E-09 2.1E-13 105.0 19.3 125 49-181 240-384 (504)
53 COG0420 SbcD DNA repair exonuc 99.1 4.4E-10 9.6E-15 111.7 9.1 87 53-144 1-89 (390)
54 TIGR00619 sbcd exonuclease Sbc 99.0 9.6E-10 2.1E-14 102.8 9.4 88 53-143 1-88 (253)
55 cd07386 MPP_DNA_pol_II_small_a 99.0 1.3E-08 2.8E-13 94.6 16.6 118 56-181 2-135 (243)
56 COG1768 Predicted phosphohydro 99.0 8.2E-09 1.8E-13 88.6 13.0 188 53-305 1-200 (230)
57 PRK10966 exonuclease subunit S 99.0 1.2E-09 2.6E-14 108.7 9.2 87 53-143 1-87 (407)
58 COG0622 Predicted phosphoester 98.9 1.1E-07 2.4E-12 83.3 17.4 56 284-340 101-157 (172)
59 cd07403 MPP_TTHA0053 Thermus t 98.9 2.4E-08 5.2E-13 83.7 12.7 28 281-308 80-107 (129)
60 cd07391 MPP_PF1019 Pyrococcus 98.8 1E-08 2.3E-13 90.2 6.9 84 56-143 1-88 (172)
61 cd07406 MPP_CG11883_N Drosophi 98.7 3.2E-06 6.9E-11 79.3 20.8 84 53-145 1-85 (257)
62 KOG3770 Acid sphingomyelinase 98.7 1.3E-06 2.8E-11 88.3 18.1 214 80-338 197-444 (577)
63 cd00845 MPP_UshA_N_like Escher 98.6 7.4E-06 1.6E-10 76.3 21.0 83 53-145 1-84 (252)
64 TIGR00024 SbcD_rel_arch putati 98.6 1.2E-07 2.7E-12 86.9 7.6 84 53-143 15-102 (225)
65 cd07410 MPP_CpdB_N Escherichia 98.6 1.2E-05 2.7E-10 76.1 21.4 86 53-145 1-97 (277)
66 COG1407 Predicted ICC-like pho 98.5 5.5E-07 1.2E-11 81.9 8.5 89 52-145 19-112 (235)
67 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.4 1.8E-05 4E-10 74.2 18.0 27 280-306 204-230 (262)
68 PF09423 PhoD: PhoD-like phosp 98.4 1.2E-05 2.6E-10 81.6 16.8 124 49-188 102-276 (453)
69 cd07390 MPP_AQ1575 Aquifex aeo 98.4 8.1E-07 1.7E-11 77.9 7.2 77 56-143 2-82 (168)
70 cd07408 MPP_SA0022_N Staphyloc 98.4 1.9E-05 4.1E-10 74.1 16.7 84 53-145 1-84 (257)
71 cd07387 MPP_PolD2_C PolD2 (DNA 98.4 1E-05 2.2E-10 75.5 14.5 125 54-186 1-154 (257)
72 COG1311 HYS2 Archaeal DNA poly 98.4 1.1E-05 2.5E-10 79.8 15.0 123 48-181 221-362 (481)
73 cd07411 MPP_SoxB_N Thermus the 98.3 0.00012 2.7E-09 68.8 20.6 85 53-145 1-97 (264)
74 PHA02239 putative protein phos 98.2 2.5E-06 5.4E-11 78.8 6.9 71 53-142 1-72 (235)
75 cd07409 MPP_CD73_N CD73 ecto-5 98.2 0.00023 5.1E-09 67.6 19.6 53 88-146 44-97 (281)
76 PRK09558 ushA bifunctional UDP 98.1 0.00025 5.3E-09 73.9 19.8 20 286-305 236-258 (551)
77 COG4186 Predicted phosphoester 98.1 0.00019 4E-09 60.8 15.0 80 53-142 4-85 (186)
78 KOG2310 DNA repair exonuclease 98.1 0.00036 7.7E-09 69.8 18.2 111 50-162 11-156 (646)
79 PRK09419 bifunctional 2',3'-cy 98.1 0.00052 1.1E-08 77.5 22.0 82 49-146 657-739 (1163)
80 cd07412 MPP_YhcR_N Bacillus su 98.0 0.0027 5.9E-08 60.5 23.3 86 53-145 1-90 (288)
81 cd07407 MPP_YHR202W_N Saccharo 98.0 0.0012 2.7E-08 62.7 19.6 88 51-144 4-98 (282)
82 cd07405 MPP_UshA_N Escherichia 97.9 0.001 2.2E-08 63.4 18.2 20 286-305 200-222 (285)
83 PRK00166 apaH diadenosine tetr 97.9 1.7E-05 3.6E-10 75.0 5.7 67 53-142 1-68 (275)
84 cd07423 MPP_PrpE Bacillus subt 97.7 4.5E-05 9.7E-10 70.5 5.6 42 93-142 38-79 (234)
85 cd07424 MPP_PrpA_PrpB PrpA and 97.7 4.2E-05 9.1E-10 69.3 5.1 65 54-143 2-67 (207)
86 PRK11439 pphA serine/threonine 97.7 4.3E-05 9.4E-10 69.9 4.5 64 54-142 18-82 (218)
87 PRK13625 bis(5'-nucleosyl)-tet 97.6 8.4E-05 1.8E-09 69.2 5.6 42 93-142 37-78 (245)
88 cd07422 MPP_ApaH Escherichia c 97.5 0.00012 2.6E-09 68.4 5.4 41 92-142 26-66 (257)
89 PRK09968 serine/threonine-spec 97.5 0.00011 2.4E-09 67.2 4.9 64 54-142 16-80 (218)
90 cd07425 MPP_Shelphs Shewanella 97.5 0.00015 3.2E-09 65.8 5.4 48 91-143 31-80 (208)
91 cd00144 MPP_PPP_family phospho 97.5 0.00026 5.6E-09 64.6 6.9 49 88-143 20-68 (225)
92 cd07413 MPP_PA3087 Pseudomonas 97.4 0.00023 4.9E-09 65.3 5.8 43 92-142 33-75 (222)
93 cd07421 MPP_Rhilphs Rhilph pho 97.4 0.00035 7.7E-09 66.0 6.8 73 54-143 3-80 (304)
94 PRK09419 bifunctional 2',3'-cy 97.4 0.0071 1.5E-07 68.4 18.4 56 51-107 40-100 (1163)
95 TIGR01530 nadN NAD pyrophospha 97.4 0.0075 1.6E-07 62.8 17.3 49 92-146 48-97 (550)
96 TIGR00668 apaH bis(5'-nucleosy 97.3 0.00042 9.1E-09 65.2 5.4 66 54-142 2-68 (279)
97 cd07382 MPP_DR1281 Deinococcus 97.3 0.022 4.9E-07 53.2 16.9 109 54-184 1-115 (255)
98 PF04042 DNA_pol_E_B: DNA poly 97.2 0.00087 1.9E-08 60.6 6.4 122 55-184 1-137 (209)
99 cd08162 MPP_PhoA_N Synechococc 97.2 0.012 2.5E-07 56.9 14.4 20 286-305 225-245 (313)
100 cd07380 MPP_CWF19_N Schizosacc 96.9 0.0068 1.5E-07 52.0 9.1 45 90-141 24-68 (150)
101 COG0737 UshA 5'-nucleotidase/2 96.9 0.05 1.1E-06 56.3 17.0 92 49-146 23-118 (517)
102 TIGR00282 metallophosphoestera 96.7 0.18 3.9E-06 47.4 17.8 110 53-184 1-116 (266)
103 PRK11907 bifunctional 2',3'-cy 96.7 0.086 1.9E-06 57.1 17.4 92 52-146 115-216 (814)
104 PRK09418 bifunctional 2',3'-cy 96.6 0.68 1.5E-05 50.1 23.8 47 288-339 272-319 (780)
105 TIGR01390 CycNucDiestase 2',3' 96.6 0.077 1.7E-06 56.1 16.4 18 288-305 223-241 (626)
106 smart00156 PP2Ac Protein phosp 96.6 0.28 6.1E-06 46.3 18.4 59 280-340 199-260 (271)
107 cd07417 MPP_PP5_C PP5, C-termi 96.5 0.13 2.9E-06 49.6 16.0 59 279-338 231-291 (316)
108 PRK09420 cpdB bifunctional 2', 96.4 0.1 2.3E-06 55.4 15.4 89 50-145 23-124 (649)
109 KOG3325 Membrane coat complex 96.3 0.59 1.3E-05 39.6 16.2 58 282-340 97-160 (183)
110 PTZ00244 serine/threonine-prot 95.8 0.75 1.6E-05 44.0 17.0 61 279-340 222-284 (294)
111 cd07420 MPP_RdgC Drosophila me 95.8 0.019 4.1E-07 55.5 5.9 61 279-340 251-313 (321)
112 KOG3947 Phosphoesterases [Gene 95.7 0.24 5.2E-06 46.2 12.6 74 48-147 57-130 (305)
113 PTZ00480 serine/threonine-prot 95.6 1.1 2.5E-05 43.2 17.6 61 279-340 229-291 (320)
114 KOG2863 RNA lariat debranching 95.4 0.025 5.4E-07 54.3 5.2 28 279-306 205-232 (456)
115 COG5555 Cytolysin, a secreted 95.2 0.12 2.6E-06 48.3 8.8 182 93-306 127-336 (392)
116 cd07389 MPP_PhoD Bacillus subt 95.1 0.093 2E-06 47.9 7.9 94 89-185 26-167 (228)
117 PTZ00235 DNA polymerase epsilo 94.9 0.15 3.4E-06 48.1 8.8 88 49-144 24-123 (291)
118 cd07418 MPP_PP7 PP7, metalloph 94.8 0.056 1.2E-06 53.3 5.9 23 279-301 271-293 (377)
119 cd07416 MPP_PP2B PP2B, metallo 94.8 0.064 1.4E-06 51.6 6.2 73 279-352 220-305 (305)
120 cd07414 MPP_PP1_PPKL PP1, PPKL 94.7 0.045 9.8E-07 52.3 4.9 67 279-346 220-287 (293)
121 cd07415 MPP_PP2A_PP4_PP6 PP2A, 94.1 0.097 2.1E-06 49.8 5.7 60 279-340 212-274 (285)
122 PTZ00239 serine/threonine prot 93.9 0.085 1.8E-06 50.6 5.0 61 279-340 213-276 (303)
123 cd07419 MPP_Bsu1_C Arabidopsis 93.5 0.17 3.8E-06 48.8 6.4 60 279-340 240-302 (311)
124 KOG0374 Serine/threonine speci 93.0 3.6 7.9E-05 40.0 14.5 68 278-346 230-298 (331)
125 COG3540 PhoD Phosphodiesterase 91.4 2.9 6.3E-05 42.1 11.7 27 279-305 391-419 (522)
126 cd07381 MPP_CapA CapA and rela 86.8 19 0.00042 32.9 13.3 16 291-306 206-221 (239)
127 PF06874 FBPase_2: Firmicute f 85.5 0.94 2E-05 47.0 4.0 53 79-142 171-223 (640)
128 smart00854 PGA_cap Bacterial c 82.4 25 0.00055 32.2 12.0 22 284-306 198-219 (239)
129 PF01102 Glycophorin_A: Glycop 81.3 2.1 4.6E-05 35.2 3.8 34 348-381 59-92 (122)
130 KOG0373 Serine/threonine speci 79.0 2.8 6E-05 38.0 4.0 68 55-142 48-116 (306)
131 KOG3818 DNA polymerase epsilon 75.5 18 0.00039 36.3 8.8 84 51-146 281-372 (525)
132 COG3855 Fbp Uncharacterized pr 75.3 3.6 7.8E-05 41.2 4.1 30 79-108 177-206 (648)
133 KOG0372 Serine/threonine speci 67.4 4.3 9.3E-05 37.5 2.4 59 279-339 213-274 (303)
134 cd07390 MPP_AQ1575 Aquifex aeo 63.9 5.8 0.00013 34.3 2.6 15 292-306 125-139 (168)
135 COG1692 Calcineurin-like phosp 60.9 50 0.0011 30.6 8.0 111 53-185 1-117 (266)
136 KOG0371 Serine/threonine prote 58.4 10 0.00022 35.3 3.2 69 54-142 61-130 (319)
137 cd07425 MPP_Shelphs Shewanella 57.7 13 0.00029 33.4 3.9 25 283-307 158-182 (208)
138 PF13277 YmdB: YmdB-like prote 55.5 85 0.0018 29.3 8.7 94 80-185 15-114 (253)
139 KOG2476 Uncharacterized conser 54.8 17 0.00037 36.6 4.2 70 53-141 6-76 (528)
140 PHA02909 hypothetical protein; 54.1 73 0.0016 22.2 6.5 14 327-340 8-22 (72)
141 TIGR01319 glmL_fam conserved h 50.9 29 0.00063 35.2 5.3 48 86-142 114-162 (463)
142 PF05393 Hum_adeno_E3A: Human 49.3 21 0.00046 27.4 3.1 18 358-375 35-52 (94)
143 PF04995 CcmD: Heme exporter p 48.9 26 0.00057 23.4 3.3 22 354-375 5-26 (46)
144 PF05545 FixQ: Cbb3-type cytoc 47.1 26 0.00057 23.6 3.1 24 359-382 13-36 (49)
145 TIGR03141 cytochro_ccmD heme e 46.9 23 0.00049 23.6 2.7 27 353-380 5-31 (45)
146 TIGR02667 moaB_proteo molybden 46.3 97 0.0021 26.7 7.3 34 79-112 50-83 (163)
147 KOG3662 Cell division control 44.6 30 0.00064 34.6 4.2 113 235-352 208-341 (410)
148 cd00886 MogA_MoaB MogA_MoaB fa 44.4 1.2E+02 0.0026 25.6 7.6 32 79-110 48-79 (152)
149 PF13258 DUF4049: Domain of un 44.3 40 0.00087 31.0 4.6 49 96-144 88-141 (318)
150 cd00758 MoCF_BD MoCF_BD: molyb 39.2 29 0.00062 28.7 2.8 25 80-106 48-72 (133)
151 PRK10299 PhoPQ regulatory prot 39.0 30 0.00065 23.2 2.2 21 1-22 1-21 (47)
152 PF02439 Adeno_E3_CR2: Adenovi 35.3 79 0.0017 20.3 3.6 31 351-381 2-32 (38)
153 TIGR02707 butyr_kinase butyrat 35.2 1E+02 0.0022 30.3 6.3 47 84-141 283-331 (351)
154 PF02350 Epimerase_2: UDP-N-ac 34.2 31 0.00068 33.7 2.6 23 81-103 56-78 (346)
155 cd01833 XynB_like SGNH_hydrola 33.7 2E+02 0.0044 23.7 7.3 55 82-136 30-85 (157)
156 COG0381 WecB UDP-N-acetylgluco 33.6 1E+02 0.0022 30.6 5.9 47 82-142 82-129 (383)
157 COG2248 Predicted hydrolase (m 32.7 1.3E+02 0.0028 28.3 6.0 75 50-142 174-249 (304)
158 cd07424 MPP_PrpA_PrpB PrpA and 31.8 49 0.0011 29.5 3.3 29 292-321 168-196 (207)
159 cd07416 MPP_PP2B PP2B, metallo 31.3 1.1E+02 0.0025 29.3 5.8 70 54-142 44-113 (305)
160 PF13941 MutL: MutL protein 30.6 82 0.0018 32.1 4.9 47 87-142 119-166 (457)
161 PRK09968 serine/threonine-spec 29.2 56 0.0012 29.6 3.2 29 292-321 179-207 (218)
162 TIGR03568 NeuC_NnaA UDP-N-acet 29.0 1.6E+02 0.0035 28.8 6.7 48 82-143 83-131 (365)
163 PF03437 BtpA: BtpA family; I 28.9 1.7E+02 0.0038 27.3 6.4 67 55-137 141-207 (254)
164 TIGR00177 molyb_syn molybdenum 28.8 58 0.0013 27.3 3.0 25 79-105 55-79 (144)
165 TIGR02855 spore_yabG sporulati 27.7 51 0.0011 31.0 2.6 21 281-301 142-163 (283)
166 PF05582 Peptidase_U57: YabG p 27.7 52 0.0011 31.2 2.7 23 281-303 143-166 (287)
167 cd04502 SGNH_hydrolase_like_7 27.7 2E+02 0.0044 24.2 6.4 50 84-136 42-95 (171)
168 cd01828 sialate_O-acetylestera 27.3 2.3E+02 0.005 23.7 6.7 49 84-136 41-93 (169)
169 PF01299 Lamp: Lysosome-associ 27.0 57 0.0012 31.2 3.0 38 346-383 262-300 (306)
170 PF05582 Peptidase_U57: YabG p 26.5 1.2E+02 0.0025 28.9 4.8 27 74-100 136-162 (287)
171 TIGR03413 GSH_gloB hydroxyacyl 26.4 1.1E+02 0.0023 28.3 4.6 44 94-143 119-167 (248)
172 cd01822 Lysophospholipase_L1_l 25.7 2.6E+02 0.0056 23.4 6.7 11 88-98 60-70 (177)
173 PRK00292 glk glucokinase; Prov 25.7 1.1E+02 0.0024 29.1 4.8 59 82-144 243-306 (316)
174 KOG0375 Serine-threonine phosp 25.0 53 0.0011 32.2 2.3 36 343-378 341-378 (517)
175 PF00072 Response_reg: Respons 24.8 2.2E+02 0.0048 21.5 5.7 47 86-142 37-83 (112)
176 TIGR01478 STEVOR variant surfa 24.5 81 0.0018 29.9 3.3 27 138-164 98-124 (295)
177 KOG2756 Predicted Mg2+-depende 24.1 1.7E+02 0.0037 27.7 5.3 51 51-103 202-253 (349)
178 PRK09417 mogA molybdenum cofac 24.0 1.7E+02 0.0037 26.1 5.2 29 79-107 53-81 (193)
179 PF14360 PAP2_C: PAP2 superfam 24.0 30 0.00066 25.7 0.4 7 294-300 4-10 (74)
180 cd01841 NnaC_like NnaC (CMP-Ne 23.8 3.1E+02 0.0067 23.0 6.9 52 84-135 43-95 (174)
181 PTZ00370 STEVOR; Provisional 23.4 88 0.0019 29.7 3.3 27 138-164 97-123 (296)
182 PF07213 DAP10: DAP10 membrane 23.3 72 0.0016 24.1 2.2 23 361-383 41-63 (79)
183 cd01141 TroA_d Periplasmic bin 22.8 1.9E+02 0.0041 24.8 5.3 38 87-139 64-101 (186)
184 PF05084 GRA6: Granule antigen 22.4 88 0.0019 27.0 2.9 22 362-383 156-177 (215)
185 PF10260 SAYSvFN: Uncharacteri 22.4 80 0.0017 23.4 2.3 20 361-380 20-39 (71)
186 cd01836 FeeA_FeeB_like SGNH_hy 21.9 3E+02 0.0065 23.5 6.5 10 53-62 3-12 (191)
187 PRK10966 exonuclease subunit S 21.4 1.7E+02 0.0037 29.3 5.2 59 293-352 221-281 (407)
188 cd02067 B12-binding B12 bindin 21.2 3.2E+02 0.0069 21.6 6.0 51 84-142 42-92 (119)
189 PRK03011 butyrate kinase; Prov 21.1 2.2E+02 0.0048 28.0 5.9 45 87-142 288-334 (358)
190 PF04881 Adeno_GP19K: Adenovir 21.0 3E+02 0.0064 22.9 5.5 44 294-339 14-57 (139)
191 PRK10528 multifunctional acyl- 20.9 3.7E+02 0.0081 23.3 6.9 44 83-126 62-105 (191)
192 cd07389 MPP_PhoD Bacillus subt 20.3 66 0.0014 28.9 1.9 17 292-308 192-208 (228)
193 cd04501 SGNH_hydrolase_like_4 20.1 3.9E+02 0.0084 22.6 6.8 38 88-125 55-92 (183)
No 1
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=100.00 E-value=3.3e-46 Score=348.20 Aligned_cols=241 Identities=22% Similarity=0.349 Sum_probs=193.8
Q ss_pred EEEecCCCCCCCC--------CcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcC
Q 016783 56 MMVANLLLVGSDS--------GFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGT 127 (383)
Q Consensus 56 ~~isD~hl~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~ 127 (383)
++|||||+.+... +.+.++..|.++++.+..++..++||+||++|||+|+|+..++++|.+++++|.++|..
T Consensus 1 ~~vaDpql~~~~sy~~~~~~~~~~~~~~~D~ylr~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~ 80 (257)
T cd08163 1 ALVADPQLVDDHTYPGRPWILNTLTEHFVDNYLRRNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDP 80 (257)
T ss_pred CcccCCccccCCccCCCchhhhhhhHHhhHHHHHHHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcC
Confidence 4789999998642 23456788999999999988899999999999999999988899999999999999975
Q ss_pred C-CCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhH
Q 016783 128 F-LGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESI 206 (383)
Q Consensus 128 ~-~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~ 206 (383)
. ..+|+++||||||+|+++.......++|++.||..+ ++++++|++||+|||+.+.+...+ .....+..++..
T Consensus 81 ~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg~~~----~~~~~~~~~fV~Lds~~l~~~~~~--~~~~~~~~~l~~ 154 (257)
T cd08163 81 SPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYFGPTS----RVIDVGNHTFVILDTISLSNKDDP--DVYQPPREFLHS 154 (257)
T ss_pred CCccceEEEeCCCcccCCCCCCCHHHHHHHHHHhCCCc----eEEEECCEEEEEEccccccCCccc--ccchhHHHHHHh
Confidence 3 247999999999998877666666899999999754 799999999999999987653322 111112222211
Q ss_pred HHHHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHH
Q 016783 207 DLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEY 286 (383)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ 286 (383)
.+ +...+..++||++|+|+++.++..||+.|++..... .+. +|+||++|+++.+..
T Consensus 155 ~l---------------------~~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~--~~~-g~~yq~~l~~~~s~~ 210 (257)
T cd08163 155 FS---------------------AMKVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLP--YGY-GYQYQNLLEPSLSEV 210 (257)
T ss_pred hh---------------------hccCCCCcEEEEeccccccCCCCCCCCccccCCCCC--CCC-CccceeecCHHHHHH
Confidence 11 012345566999999999999999999887743221 123 378999999999999
Q ss_pred HHHHcCCceEEeccCCCCceeecC-------CCceEEEecceeccCC
Q 016783 287 IFQALKPKIIFSAHAHEFCDYTHS-------DGTREVTVSAMTWKAR 326 (383)
Q Consensus 287 ll~~~~v~lvfsGH~H~~~~~~~~-------~~~~eitv~S~s~~~g 326 (383)
||+.++|.+|||||+|++|++.|+ ++++|+||+||||.||
T Consensus 211 il~~~~P~~vfsGhdH~~C~~~h~~~~~~~~~~~~E~tv~S~s~~~g 257 (257)
T cd08163 211 ILKAVQPVIAFSGDDHDYCEVVHEYQFNGKSGSTREITVKSISMAMG 257 (257)
T ss_pred HHHhhCCcEEEecCCCccceeEcccccCCCCCCceEEEecccccccC
Confidence 999999999999999999999998 5799999999999997
No 2
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=100.00 E-value=5.6e-36 Score=287.96 Aligned_cols=301 Identities=19% Similarity=0.280 Sum_probs=207.8
Q ss_pred HHHHhhhceee----ecCCCcCCCCCCCCCCCCCCCCCCCCceEEEEEecCCCCCCCC-----CcccccchHHHHHHHHH
Q 016783 15 VTSLIIYDEWV----STPSCKIMPSADPNDYEPGPNSGSGVDLKVMMVANLLLVGSDS-----GFVDRHFRDYYMAKFFR 85 (383)
Q Consensus 15 ~~~~~~y~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~isD~hl~~~~~-----~~~~~~~~~~~l~~~~~ 85 (383)
++.+++|.|.+ +..+|+|+. ...++++++++|++.+||||+.|... ++++++.+|+++++.|.
T Consensus 15 ~~~lll~~e~v~~~~~~~~c~Wp~--------~~~~~~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~ 86 (410)
T KOG3662|consen 15 LQKLLLYVEKVIYYRALFQCQWPG--------KKQWASNENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFD 86 (410)
T ss_pred HHHHHHHHhheeeeeecccccCCc--------cccccCCCCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHH
Confidence 33444444443 467999984 23444457899999999999998432 58899999999999999
Q ss_pred HHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCCC
Q 016783 86 KSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDS 165 (383)
Q Consensus 86 ~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~ 165 (383)
.+...++||+++|+|||+|+|.+++++||.++++||++||..+.++|++++|||||+|+++.+.+...+||++.||+..
T Consensus 87 ~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~fg~~~- 165 (410)
T KOG3662|consen 87 MSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGNELIPEWIDRFESVFGPTE- 165 (410)
T ss_pred HHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCccccccccccchhHHHHHHHhhcchh-
Confidence 9999999999999999999999999999999999999999987889999999999999999888888999999999744
Q ss_pred CCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhHHHHHhhcc----ccccc-cccccchhhhhccCCCCCCEE
Q 016783 166 SGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDLRMEAKG----SAEAV-HDFSNFAWREKAMSSKSGPVL 240 (383)
Q Consensus 166 ~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~Il 240 (383)
..|+++++.|+++|+..+.++.+.. +.....++..+..- ..+.+ .+....-|. +...+...+.+
T Consensus 166 ---r~f~v~~~tf~~~d~~~ls~~~~~~-------~~~~~~~fl~~~~~~~~~~~r~~~~h~p~~~~~-~p~l~~~~p~~ 234 (410)
T KOG3662|consen 166 ---RRFDVGNLTFVMFDSNALSGNPDIN-------VLSEARDFLNSVSTSGDGYPRILLAHDPDLYGI-KPELPTSGPDR 234 (410)
T ss_pred ---hhhccCCceeEEeeehhhcCCCchh-------hhhhhhhhhcccccCCCCcceeeecccchhccC-CcccCCCcccc
Confidence 6899999999999999988765432 22233333322100 00000 000000011 01112223344
Q ss_pred EeeccCccCCCCCCCCCcCCcccc-cCCCCCCCccccccC-ChHHHHHHHHHcCCceEEeccCCCCceeecCC---CceE
Q 016783 241 LLHFPLHRTMESQCGSQISNTREK-RRFSEPGPYGLLHAV-PLNATEYIFQALKPKIIFSAHAHEFCDYTHSD---GTRE 315 (383)
Q Consensus 241 ~~H~Pl~~~~~~~c~~~~~~~~~~-~~~~~~g~y~~~~~l-~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~---~~~e 315 (383)
..|+|+|+.+...|...++...++ .+... +.++.. ..+....+++ +++.++++||+|..|...|.. ++.+
T Consensus 235 ~~h~ply~g~~~qc~~~~~~~~~~~~e~~~----~~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~~~k~~~~~~g~~~ 309 (410)
T KOG3662|consen 235 LQHIPLYSGSAAQCLFEPATKVIELNENIE----REFDLSGDDEDHCSLLK-LNYKLVVGGHDHKEYNDKHASMSSGALE 309 (410)
T ss_pred cccceeecccccccccccccchHHHhhhhh----hhcccccccccceEEee-cccccccCCcCccccccccccccccccc
Confidence 446777766555565443332110 00000 011111 2223333443 578899999999998888766 8999
Q ss_pred EEecceeccCCCCCcEEEEEEeCCC
Q 016783 316 VTVSAMTWKARDDPGFVIANFHGNG 340 (383)
Q Consensus 316 itv~S~s~~~g~~pgy~ll~i~~~~ 340 (383)
+++++.|++++..++|....++++.
T Consensus 310 ~tv~~~s~~~~~~~~~i~~~~~~~~ 334 (410)
T KOG3662|consen 310 YTVLLLSLRFGQDFNMIFGGIFPDI 334 (410)
T ss_pred cchhhhhhhccccHHHHhhccccce
Confidence 9999999999876666666655543
No 3
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.96 E-value=3.6e-29 Score=221.57 Aligned_cols=163 Identities=24% Similarity=0.445 Sum_probs=136.7
Q ss_pred EEEecCCCCCCCC-----CcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCC
Q 016783 56 MMVANLLLVGSDS-----GFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLG 130 (383)
Q Consensus 56 ~~isD~hl~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (383)
++|||||+.|... ++++++.+|+++++.+..+++..+||+||++|||+|+|...++++|.+++++|+++|....+
T Consensus 1 llvADPqllg~~~~~~~~~~~~~~~~D~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~ 80 (195)
T cd08166 1 LLVADPQILGYQNENFGLGWIARWDSDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNG 80 (195)
T ss_pred CcccCccccCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 4799999998753 37789999999999999999999999999999999999988888999999999999997778
Q ss_pred CcEEEecCCCCCCCC-CCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhHHHH
Q 016783 131 VPFHVLLGDRDVGEC-SGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDLR 209 (383)
Q Consensus 131 ~p~~~v~GNHD~~~~-~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l~ 209 (383)
+|+++||||||+|+. ....++.++||++.|
T Consensus 81 ~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F------------------------------------------------- 111 (195)
T cd08166 81 TKIIYLPGDNDIGGEEEDPIESKIRRFEKYF------------------------------------------------- 111 (195)
T ss_pred CcEEEECCCCCcCCCCCCcCHHHHHHHHHhh-------------------------------------------------
Confidence 999999999999874 334556677887755
Q ss_pred HhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHHH
Q 016783 210 MEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIFQ 289 (383)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~ 289 (383)
|+++|.|+....+ ..+..+.+
T Consensus 112 -----------------------------i~lsH~P~~~~~~------------------------------~~~~~~~~ 132 (195)
T cd08166 112 -----------------------------IMLSHVPLLAEGG------------------------------QALKHVVT 132 (195)
T ss_pred -----------------------------eeeeccccccccc------------------------------HHHHHHHH
Confidence 2457999876322 14678889
Q ss_pred HcCCceEEeccCCCCceeecCC--------------------------CceEEEecceeccCC
Q 016783 290 ALKPKIIFSAHAHEFCDYTHSD--------------------------GTREVTVSAMTWKAR 326 (383)
Q Consensus 290 ~~~v~lvfsGH~H~~~~~~~~~--------------------------~~~eitv~S~s~~~g 326 (383)
+++|.+|||||.|.+..+.... .+.|+.||+||+|||
T Consensus 133 ~~~p~~Ifs~H~H~s~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ei~vptcsyrmg 195 (195)
T cd08166 133 DLDPDLIFSAHRHKSSIFMYDRLLRQNSLFTRVSPDDPTLKQLILQNEVMHEIQVPTCSYRMG 195 (195)
T ss_pred hcCceEEEEcCccceeeEEeecccchhheeeeccCCcchHHHhhcCCcceEEEECCcccccCC
Confidence 9999999999999988665321 377999999999997
No 4
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.96 E-value=1.3e-27 Score=224.62 Aligned_cols=245 Identities=16% Similarity=0.121 Sum_probs=160.3
Q ss_pred CceEEEEEecCCCCCCCCCc---ccccchHHHHHHHHHHHHhhC--CCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhh
Q 016783 51 VDLKVMMVANLLLVGSDSGF---VDRHFRDYYMAKFFRKSFHTL--NPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQML 125 (383)
Q Consensus 51 ~~~~i~~isD~hl~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~ 125 (383)
++++|+++||+|++-..... .+.+...-.+.+.+...+++. +||+|+++|||++++...+ ...+.++.+.+++
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~--~~~~~~~~~~~~~ 80 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDE--LRERQVSDLKDVL 80 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchh--hHHHHHHHHHHHH
Confidence 57999999999996422111 111111112223344455555 9999999999999876432 1223345566665
Q ss_pred cC-CCCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHh
Q 016783 126 GT-FLGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETE 204 (383)
Q Consensus 126 ~~-~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~ 204 (383)
+. ..++|+++++||||++... .....++|.+.||+.+ ++++.++++||+|||..+..+.. .......|+.|+
T Consensus 81 ~~~~~~vp~~~i~GNHD~~~~~--~~~~~~~f~~~~g~~~----y~~~~~~~~~i~lds~~~~~~~~-~~~~~~~ql~WL 153 (262)
T cd07395 81 SLLDPDIPLVCVCGNHDVGNTP--TEESIKDYRDVFGDDY----FSFWVGGVFFIVLNSQLFFDPSE-VPELAQAQDVWL 153 (262)
T ss_pred hhccCCCcEEEeCCCCCCCCCC--ChhHHHHHHHHhCCcc----eEEEECCEEEEEeccccccCccc-cccchHHHHHHH
Confidence 53 2368999999999996432 2234677888888643 78999999999999987543221 112345678887
Q ss_pred hHHHHHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHH
Q 016783 205 SIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNAT 284 (383)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~ 284 (383)
+++|... .....++.||++|+|++......+. .|-.....+++.+
T Consensus 154 ~~~L~~~-------------------~~~~~~~~iv~~H~P~~~~~~~~~~----------------~~~~~~~~~~~~l 198 (262)
T cd07395 154 EEQLEIA-------------------KESDCKHVIVFQHIPWFLEDPDEED----------------SYFNIPKSVRKPL 198 (262)
T ss_pred HHHHHHH-------------------HhccCCcEEEEECcCCccCCCCCCc----------------ccCCcCHHHHHHH
Confidence 6655321 0013445699999999863321000 0000111234567
Q ss_pred HHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC-CCCcEEEEEEeCCC
Q 016783 285 EYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR-DDPGFVIANFHGNG 340 (383)
Q Consensus 285 ~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g-~~pgy~ll~i~~~~ 340 (383)
.+++++++++++||||+|.+..... +++.++++++++...+ ..|||+++++++++
T Consensus 199 ~~ll~~~~V~~v~~GH~H~~~~~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 254 (262)
T cd07395 199 LDKFKKAGVKAVFSGHYHRNAGGRY-GGLEMVVTSAIGAQLGNDKSGLRIVKVTEDK 254 (262)
T ss_pred HHHHHhcCceEEEECccccCCceEE-CCEEEEEcCceecccCCCCCCcEEEEECCCc
Confidence 8899999999999999999886655 4788999998876555 56899999998877
No 5
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.95 E-value=7e-26 Score=214.43 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=150.3
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh-hCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcC
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH-TLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGT 127 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~ 127 (383)
+.+++||+|+||+|+................+.+++..+.+ ..+||+||++|||++++. .+ .++++.+.++.
T Consensus 11 ~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~---~~----~~~~~~~~l~~ 83 (275)
T PRK11148 11 GEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS---SE----AYQHFAEGIAP 83 (275)
T ss_pred CCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC---HH----HHHHHHHHHhh
Confidence 45779999999999964322111112223334444444333 247999999999999764 22 34455555553
Q ss_pred CCCCcEEEecCCCCCCCCCCCChhHHHHHHhh-CCCCCCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhH
Q 016783 128 FLGVPFHVLLGDRDVGECSGLDTGSVDWIAGN-FPGLDSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESI 206 (383)
Q Consensus 128 ~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~-f~~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~ 206 (383)
. ++|++++|||||... ...+.+.+. +++ .+..+..++++||+|||....... .....+|+.|+++
T Consensus 84 l-~~Pv~~v~GNHD~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~i~Lds~~~g~~~---G~l~~~ql~wL~~ 149 (275)
T PRK11148 84 L-RKPCVWLPGNHDFQP------AMYSALQDAGISP----AKHVLIGEHWQILLLDSQVFGVPH---GELSEYQLEWLER 149 (275)
T ss_pred c-CCcEEEeCCCCCChH------HHHHHHhhcCCCc----cceEEecCCEEEEEecCCCCCCcC---CEeCHHHHHHHHH
Confidence 2 589999999999831 111222221 211 113344567999999997543211 2244567877765
Q ss_pred HHHHhhccccccccccccchhhhhccCCCCCCEEEeec-cCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHH
Q 016783 207 DLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHF-PLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATE 285 (383)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~-Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~ 285 (383)
.|.. .++++.||++|| |+.... .+.+. ..+.+.+.+.
T Consensus 150 ~L~~----------------------~~~~~~vv~~hH~P~~~~~----~~~d~----------------~~l~n~~~l~ 187 (275)
T PRK11148 150 KLAD----------------------APERHTLVLLHHHPLPAGC----AWLDQ----------------HSLRNAHELA 187 (275)
T ss_pred HHhh----------------------CCCCCeEEEEcCCCCCCCc----chhhc----------------cCCCCHHHHH
Confidence 5431 133455665654 554321 11111 1123566788
Q ss_pred HHHHHc-CCceEEeccCCCCceeecCCCceEEEecceeccCC----------CCCcEEEEEEeCCCceEEEeEeeccc
Q 016783 286 YIFQAL-KPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR----------DDPGFVIANFHGNGRGVSVSYCSLAR 352 (383)
Q Consensus 286 ~ll~~~-~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g----------~~pgy~ll~i~~~~~~~~~~~c~lp~ 352 (383)
++++++ +++++||||+|....... +|+..+++||++++.. ..|||+++++.++| .+.++.+++++
T Consensus 188 ~ll~~~~~v~~vl~GH~H~~~~~~~-~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~~g-~~~~~~~~~~~ 263 (275)
T PRK11148 188 EVLAKFPNVKAILCGHIHQELDLDW-NGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHADG-SLETEVHRLAD 263 (275)
T ss_pred HHHhcCCCceEEEecccChHHhceE-CCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcCCC-cEEEEEEEcCC
Confidence 999997 899999999999875544 5799999999886532 23799999998888 58999999886
No 6
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.94 E-value=2.1e-25 Score=210.22 Aligned_cols=232 Identities=18% Similarity=0.172 Sum_probs=144.4
Q ss_pred eEEEEEecCCCCCCCCCcccccch--HHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFR--DYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLG 130 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (383)
|||+++||+|+...... ..+... -..+.++ .+.+++.+||+||++|||++.+...+.++ ++.+.+.++. .+
T Consensus 1 ~r~~~iSD~H~~~~~~~-~~~~~~~~~~~l~~~-i~~i~~~~~d~vv~~GDlv~~~~~~~~~~----~~~~~~~l~~-l~ 73 (267)
T cd07396 1 FRFGIIADIQYADEDDT-RPRYYRNSLEKLEEA-VEEWNRESLDFVVQLGDIIDGDNARAEEA----LDAVLAILDR-LK 73 (267)
T ss_pred CeEEEEeccccccCCCc-ccchHHHhHHHHHHH-HHHHHcCCCCEEEECCCeecCCCchHHHH----HHHHHHHHHh-cC
Confidence 68999999998653311 111111 1223333 34456678999999999998776422233 4444555542 36
Q ss_pred CcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEecccccccCCC-------------------
Q 016783 131 VPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSLNAVALLCGNN------------------- 191 (383)
Q Consensus 131 ~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~------------------- 191 (383)
+|++++|||||...... ......+...++. .+++|+.++++||++||........
T Consensus 74 ~p~~~v~GNHD~~~~~~--~~~~~~~~~~~~~----~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (267)
T cd07396 74 GPVHHVLGNHDLYNPSR--EYLLLYTLLGLGA----PYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLY 147 (267)
T ss_pred CCEEEecCccccccccH--hhhhcccccCCCC----ceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhh
Confidence 89999999999853221 0000112222333 3489999999999999975321100
Q ss_pred --------ccccchHHHHhHhhHHHHHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCccc
Q 016783 192 --------KLRFSVEKVIETESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTRE 263 (383)
Q Consensus 192 --------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~ 263 (383)
......+.|+.|++.++.. ......+.||++|+|++.... .
T Consensus 148 ~~~~~~~~~~G~l~~~Ql~WL~~~L~~--------------------~~~~~~~viV~~Hhp~~~~~~----~------- 196 (267)
T cd07396 148 LSEPRFVDWNGGIGEEQLQWLRNELQE--------------------ADANGEKVIIFSHFPLHPEST----S------- 196 (267)
T ss_pred ccCccceeccCcCCHHHHHHHHHHHHH--------------------HHhcCCeEEEEEeccCCCCCC----C-------
Confidence 0012334566665444331 011234458999999875321 0
Q ss_pred ccCCCCCCCccccccCChHHHHHHHHHc-CCceEEeccCCCCceeecCCCceEEEecceeccCC-CCCcEEEEEEeCCC
Q 016783 264 KRRFSEPGPYGLLHAVPLNATEYIFQAL-KPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR-DDPGFVIANFHGNG 340 (383)
Q Consensus 264 ~~~~~~~g~y~~~~~l~~e~~~~ll~~~-~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g-~~pgy~ll~i~~~~ 340 (383)
......+.+.+.++++++ +++++||||+|....... +|++++++||++.+ + ..|.|+++.+..+.
T Consensus 197 ----------~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~-~gi~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 263 (267)
T cd07396 197 ----------PHGLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQR-HGIHFLTLEGMVET-PPESNAFGVVIVYEDR 263 (267)
T ss_pred ----------ccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCcccc-CCeeEEEechhhcC-CCCCCceEEEEEeCCc
Confidence 001122456678889885 789999999999975554 68999999999988 6 46899999998764
No 7
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.93 E-value=4.5e-24 Score=197.67 Aligned_cols=222 Identities=16% Similarity=0.222 Sum_probs=141.7
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhC--CCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTL--NPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
||+++||+|++...............+.+.+ +.+++. +||+||++|||++.+.. ++| +.+.++++.. ++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~~~~d~vi~~GDl~~~~~~---~~~----~~~~~~l~~~-~~ 71 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVL-AHINALHPRPDLVLVTGDLTDDGSP---ESY----ERLRELLAAL-PI 71 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHH-HHHHhcCCCCCEEEECccCCCCCCH---HHH----HHHHHHHhhc-CC
Confidence 6899999999753211000111222333333 334455 89999999999997642 333 3444555432 68
Q ss_pred cEEEecCCCCCCCCCCCChhHHHHHHhhCCCC---CCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhHHH
Q 016783 132 PFHVLLGDRDVGECSGLDTGSVDWIAGNFPGL---DSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDL 208 (383)
Q Consensus 132 p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~---~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l 208 (383)
|+++|+||||... .+++.|+.. ....+++++.++++||++||....... ....+.|+.|++..+
T Consensus 72 p~~~v~GNHD~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~---~~~~~~ql~wL~~~L 138 (240)
T cd07402 72 PVYLLPGNHDDRA----------AMRAVFPELPPAPGFVQYVVDLGGWRLILLDSSVPGQHG---GELCAAQLDWLEAAL 138 (240)
T ss_pred CEEEeCCCCCCHH----------HHHHhhccccccccccceeEecCCEEEEEEeCCCCCCcC---CEECHHHHHHHHHHH
Confidence 9999999999731 233334322 122457899999999999997542211 123455777765544
Q ss_pred HHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHH
Q 016783 209 RMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIF 288 (383)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll 288 (383)
.. .+..+.|+++|+|++..... ..+ .....+.+...+++
T Consensus 139 ~~----------------------~~~~~~il~~H~pp~~~~~~---~~~----------------~~~~~~~~~~~~~l 177 (240)
T cd07402 139 AE----------------------APDKPTLVFLHHPPFPVGIA---WMD----------------AIGLRNAEALAAVL 177 (240)
T ss_pred Hh----------------------CCCCCEEEEECCCCccCCch---hhh----------------hhhCCCHHHHHHHH
Confidence 21 12456699999998763210 000 01122456678899
Q ss_pred HHc-CCceEEeccCCCCceeecCCCceEEEecceeccCC----------CCCcEEEEEEeCC
Q 016783 289 QAL-KPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR----------DDPGFVIANFHGN 339 (383)
Q Consensus 289 ~~~-~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g----------~~pgy~ll~i~~~ 339 (383)
+++ +++++||||+|....... ++++.++++|+++... ..+||...++..+
T Consensus 178 ~~~~~v~~v~~GH~H~~~~~~~-~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
T cd07402 178 ARHPNVRAILCGHVHRPIDGSW-GGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLHED 238 (240)
T ss_pred hcCCCeeEEEECCcCchHHeEE-CCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEecC
Confidence 998 899999999999876665 5799999999886544 2468888888654
No 8
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.92 E-value=2e-24 Score=189.96 Aligned_cols=89 Identities=26% Similarity=0.527 Sum_probs=74.7
Q ss_pred EEEecCCCCCCCC----Cc----ccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcC
Q 016783 56 MMVANLLLVGSDS----GF----VDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGT 127 (383)
Q Consensus 56 ~~isD~hl~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~ 127 (383)
++|||||+.+... +. +.....+.++.+.+..+++..+||+||++|||+|++.....++|.+..++|.+++..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFL 80 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcc
Confidence 4789999987652 22 556788889999999999999999999999999988766667888889999999874
Q ss_pred CC----CCcEEEecCCCCCCC
Q 016783 128 FL----GVPFHVLLGDRDVGE 144 (383)
Q Consensus 128 ~~----~~p~~~v~GNHD~~~ 144 (383)
.. ++|+++|+||||++.
T Consensus 81 ~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 81 PSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred cccccCCceEEEECCccccCC
Confidence 33 689999999999974
No 9
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.91 E-value=1e-23 Score=182.80 Aligned_cols=155 Identities=38% Similarity=0.731 Sum_probs=116.8
Q ss_pred EEEecCCCCCCCCC-cccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEE
Q 016783 56 MMVANLLLVGSDSG-FVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFH 134 (383)
Q Consensus 56 ~~isD~hl~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~ 134 (383)
++|||+|+.+...+ +++++.++.++.+.|.+++++.+||+|+++||+++++...++++|.+...+|.++++...++|++
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLH 80 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEE
Confidence 47999999765432 34667788889889999999999999999999999887666677877788888887654468999
Q ss_pred EecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhHHHHHhhcc
Q 016783 135 VLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDLRMEAKG 214 (383)
Q Consensus 135 ~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 214 (383)
+|+||||++..........++ +.
T Consensus 81 ~v~GNHD~~~~~~~~~~~~~~----------------------------------------------------~~----- 103 (156)
T cd08165 81 VVVGNHDIGFHYEMTTYKLER----------------------------------------------------FE----- 103 (156)
T ss_pred EEcCCCCcCCCCccCHHHHHH----------------------------------------------------HH-----
Confidence 999999986321110000011 11
Q ss_pred ccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHHHHcCCc
Q 016783 215 SAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIFQALKPK 294 (383)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~~~~v~ 294 (383)
...++++|.|... ++.+.++.
T Consensus 104 ---------------------~~~~~l~H~p~~~--------------------------------------~~~~~~~~ 124 (156)
T cd08165 104 ---------------------KVFILLQHFPLYR--------------------------------------LLQWLKPR 124 (156)
T ss_pred ---------------------HHeeeeeCChHHH--------------------------------------HHHhhCCC
Confidence 0017888999632 22345788
Q ss_pred eEEeccCCCCceeecCCCceEEEecceeccCC
Q 016783 295 IIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR 326 (383)
Q Consensus 295 lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g 326 (383)
++||||+|..+.+.+.+++.|+|+||+|||.|
T Consensus 125 ~~l~GH~H~~~~~~~~~~~~e~~~~~~~~~~~ 156 (156)
T cd08165 125 LVLSGHTHSFCEVTHPDGTPEVTVPSFSWRNR 156 (156)
T ss_pred EEEEcccCCCceeEEECCEEEEEEecceecCC
Confidence 99999999999998889999999999999874
No 10
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=99.91 E-value=1.2e-23 Score=186.00 Aligned_cols=90 Identities=20% Similarity=0.345 Sum_probs=75.1
Q ss_pred EEEecCCCCCCCC--Ccc--cc---cchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCC
Q 016783 56 MMVANLLLVGSDS--GFV--DR---HFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 56 ~~isD~hl~~~~~--~~~--~~---~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~ 128 (383)
++||||||.|... ++. .+ +..|.|+++.+..+...++||.|+|+|||+|++ +.++++|.++++||.++|...
T Consensus 1 l~vADPQi~d~~~~~~~~~~~rld~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~-w~~D~ef~~~~~RF~~if~~~ 79 (193)
T cd08164 1 LALGDPQIEGDHKIENYGFKGRLDLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQ-WIDDEEFAKRADRYRRRFFGR 79 (193)
T ss_pred CcccCccccCCCCCCCCcccceehhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCC-cccHHHHHHHHHHHHHHhcCC
Confidence 4689999998763 222 33 359999999999999999999999999999985 779999999999999998532
Q ss_pred -----------------CCCcEEEecCCCCCCCCC
Q 016783 129 -----------------LGVPFHVLLGDRDVGECS 146 (383)
Q Consensus 129 -----------------~~~p~~~v~GNHD~~~~~ 146 (383)
.++|++.||||||+|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~~~ 114 (193)
T cd08164 80 NDWQVGNISLAARTFEDGKTPLINIAGNHDVGYGG 114 (193)
T ss_pred cccccccccccccccccCCceEEEECCcccCCCCC
Confidence 148999999999998643
No 11
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.88 E-value=2.7e-21 Score=183.06 Aligned_cols=232 Identities=18% Similarity=0.245 Sum_probs=141.4
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCC-CCCCCCC-hhcHHHHHHHHHHhhcC-CC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVS-AKGSELT-RSDWLPVLDRFHQMLGT-FL 129 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~-d~~~~~~-~~~~~~~~~~~~~i~~~-~~ 129 (383)
++|++++|....+.. ....+.+.+.+.++..+||+||++||++ ++|.... ++.|.+ .|.+++.. ..
T Consensus 1 ~~f~~~gD~g~~~~~--------~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~---~~~~~~~~~~~ 69 (277)
T cd07378 1 LRFLALGDWGGGGTA--------GQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFET---TFEDVYSAPSL 69 (277)
T ss_pred CeEEEEeecCCCCCH--------HHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHH---HHHHHccchhh
Confidence 478999999875221 1123445566666778999999999997 4443222 233333 23344332 14
Q ss_pred CCcEEEecCCCCCCCCCCCChhHHHHHH----hhCCCCCCCCCceEEEC------CEEEEEecccccccCCC--------
Q 016783 130 GVPFHVLLGDRDVGECSGLDTGSVDWIA----GNFPGLDSSGCGAFEIS------NISFLSLNAVALLCGNN-------- 191 (383)
Q Consensus 130 ~~p~~~v~GNHD~~~~~~~~~~~~~~f~----~~f~~~~~~~~~~~~~~------~v~fi~Lds~~~~~~~~-------- 191 (383)
++|++++|||||........ ..... ..+..+ ..+|++..+ +++||+|||.....+..
T Consensus 70 ~~P~~~v~GNHD~~~~~~~~---~~~~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~ 144 (277)
T cd07378 70 QVPWYLVLGNHDYSGNVSAQ---IDYTKRPNSPRWTMP--AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGP 144 (277)
T ss_pred cCCeEEecCCcccCCCchhe---eehhccCCCCCccCc--chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccC
Confidence 68999999999996422100 01111 111111 135788887 79999999997643221
Q ss_pred ccccchHHHHhHhhHHHHHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCC
Q 016783 192 KLRFSVEKVIETESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPG 271 (383)
Q Consensus 192 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g 271 (383)
.......+|++|++.+|.. .....+||++|+|++..... +
T Consensus 145 ~~~~~~~~Q~~wL~~~L~~----------------------~~~~~~iv~~H~P~~~~~~~------------------~ 184 (277)
T cd07378 145 PNGKLAEEQLAWLEKTLAA----------------------STADWKIVVGHHPIYSSGEH------------------G 184 (277)
T ss_pred cchhhHHHHHHHHHHHHHh----------------------cCCCeEEEEeCccceeCCCC------------------C
Confidence 1122345566666544421 12345699999999864220 0
Q ss_pred CccccccCChHHHHHHHHHcCCceEEeccCCCCceeecC-CCceEEEecceecc-----------------CCCCCcEEE
Q 016783 272 PYGLLHAVPLNATEYIFQALKPKIIFSAHAHEFCDYTHS-DGTREVTVSAMTWK-----------------ARDDPGFVI 333 (383)
Q Consensus 272 ~y~~~~~l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~-~~~~eitv~S~s~~-----------------~g~~pgy~l 333 (383)
. +....+.+.+++++++++++||||+|.+...... .++.++++++.+.. .+...||..
T Consensus 185 --~--~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~ 260 (277)
T cd07378 185 --P--TSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAY 260 (277)
T ss_pred --C--cHHHHHHHHHHHHHcCCCEEEeCCcccceeeecCCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEE
Confidence 0 0011346788999999999999999999876653 37899988865421 112379999
Q ss_pred EEEeCCCceEEEe
Q 016783 334 ANFHGNGRGVSVS 346 (383)
Q Consensus 334 l~i~~~~~~~~~~ 346 (383)
+++.++. +.++
T Consensus 261 i~v~~~~--l~~~ 271 (277)
T cd07378 261 LELTKEE--LTVR 271 (277)
T ss_pred EEEecCE--EEEE
Confidence 9998764 4444
No 12
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.88 E-value=5.6e-21 Score=182.42 Aligned_cols=232 Identities=17% Similarity=0.173 Sum_probs=138.3
Q ss_pred CceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh-hCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCC
Q 016783 51 VDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH-TLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFL 129 (383)
Q Consensus 51 ~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~ 129 (383)
.++||++++|+|..+... .+.+.++.+ ..+||+|+++|||++++...+.++|....+.+..+..
T Consensus 3 ~~~~f~v~gD~~~~~~~~------------~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~--- 67 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNS------------TNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLAS--- 67 (294)
T ss_pred CcEEEEEEEECCCCCCCc------------HHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHh---
Confidence 579999999999743211 122333333 4789999999999976543333455554444444432
Q ss_pred CCcEEEecCCCCCCCCCCCChhH--HHHHHhhC-C-CCCCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhh
Q 016783 130 GVPFHVLLGDRDVGECSGLDTGS--VDWIAGNF-P-GLDSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETES 205 (383)
Q Consensus 130 ~~p~~~v~GNHD~~~~~~~~~~~--~~~f~~~f-~-~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~ 205 (383)
.+|+++++||||........... ..++.... + ......+|+|++++++||+|||...... .....+|+.|++
T Consensus 68 ~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~----~~~~~~q~~WL~ 143 (294)
T cd00839 68 YVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYG----DGPGSPQYDWLE 143 (294)
T ss_pred cCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEeccccccc----CCCCcHHHHHHH
Confidence 58999999999996533111000 00000000 0 1112346899999999999999864311 112345788877
Q ss_pred HHHHHhhccccccccccccchhhhhccCCCCC-CEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHH
Q 016783 206 IDLRMEAKGSAEAVHDFSNFAWREKAMSSKSG-PVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNAT 284 (383)
Q Consensus 206 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~ 284 (383)
++|... .....+ .|+++|+|++........ . ....-..+.+
T Consensus 144 ~~L~~~--------------------~~~~~~~~iv~~H~P~~~~~~~~~~--~----------------~~~~~~~~~l 185 (294)
T cd00839 144 ADLAKV--------------------DRSKTPWIIVMGHRPMYCSNTDHDD--C----------------IEGEKMRAAL 185 (294)
T ss_pred HHHHHh--------------------cccCCCeEEEEeccCcEecCccccc--c----------------chhHHHHHHH
Confidence 665421 111223 488999999874321000 0 0011134567
Q ss_pred HHHHHHcCCceEEeccCCCCceeec---------------CCCceEEEecceec--------c--------CCCCCcEEE
Q 016783 285 EYIFQALKPKIIFSAHAHEFCDYTH---------------SDGTREVTVSAMTW--------K--------ARDDPGFVI 333 (383)
Q Consensus 285 ~~ll~~~~v~lvfsGH~H~~~~~~~---------------~~~~~eitv~S~s~--------~--------~g~~pgy~l 333 (383)
.+|+++++++++||||+|.+.+... .+++..+++++-.- . .....||..
T Consensus 186 ~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~ 265 (294)
T cd00839 186 EDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDYGFGR 265 (294)
T ss_pred HHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEEeccCCEEE
Confidence 8899999999999999999986542 23567777664210 0 013479999
Q ss_pred EEEeCC
Q 016783 334 ANFHGN 339 (383)
Q Consensus 334 l~i~~~ 339 (383)
+++.++
T Consensus 266 ~~~~~~ 271 (294)
T cd00839 266 LTVHNS 271 (294)
T ss_pred EEEEec
Confidence 998875
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.86 E-value=1.3e-20 Score=176.42 Aligned_cols=197 Identities=10% Similarity=0.172 Sum_probs=113.2
Q ss_pred EEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCC------ChhcHHHHHHHHHHhhcCC
Q 016783 55 VMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSEL------TRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 55 i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~------~~~~~~~~~~~~~~i~~~~ 128 (383)
|+++||+|++.... ..... . .+.+...++..+||+||++||++|+.... .+++|.+..+.+.+. ...
T Consensus 2 ~~~iSDlH~g~~~~----~~~~~-~-~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 74 (256)
T cd07401 2 FVHISDIHVSSFHP----PNRAQ-D-ETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKES-SVI 74 (256)
T ss_pred EEEecccccCCcCc----hhhhh-H-HHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHh-CCC
Confidence 79999999964321 11110 1 12344567888999999999999875421 123343333322221 111
Q ss_pred CCCcEEEecCCCCCCCCCCCChhHHHHHHhhC---CCCCCCCCceEE--ECCEEEEEecccccccCCC---ccccchHHH
Q 016783 129 LGVPFHVLLGDRDVGECSGLDTGSVDWIAGNF---PGLDSSGCGAFE--ISNISFLSLNAVALLCGNN---KLRFSVEKV 200 (383)
Q Consensus 129 ~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f---~~~~~~~~~~~~--~~~v~fi~Lds~~~~~~~~---~~~~~~~~~ 200 (383)
...|++.|+||||+....... .....|.++. ++.. .++.+. .++++||+|||....+... ......++|
T Consensus 75 ~~~p~~~v~GNHD~~~~~~~~-~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~q 151 (256)
T cd07401 75 NKEKWFDIRGNHDLFNIPSLD-SENNYYRKYSATGRDGS--FSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKL 151 (256)
T ss_pred CcceEEEeCCCCCcCCCCCcc-chhhHHHHhheecCCCc--cceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHH
Confidence 247999999999994322111 1123444433 2221 112222 4999999999986532111 112345567
Q ss_pred HhHhhHHHHHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCC
Q 016783 201 IETESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVP 280 (383)
Q Consensus 201 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~ 280 (383)
+.|++.++.. ....+..||++|+|+...... + . .+
T Consensus 152 l~wL~~~L~~---------------------~~~~~~~IV~~HhP~~~~~~~-~---------------~--------~~ 186 (256)
T cd07401 152 LDRLEKELEK---------------------STNSNYTIWFGHYPTSTIISP-S---------------A--------KS 186 (256)
T ss_pred HHHHHHHHHh---------------------cccCCeEEEEEcccchhccCC-C---------------c--------ch
Confidence 7776544421 123345699999998542110 0 0 01
Q ss_pred hHHHHHHHHHcCCceEEeccCCCCce
Q 016783 281 LNATEYIFQALKPKIIFSAHAHEFCD 306 (383)
Q Consensus 281 ~e~~~~ll~~~~v~lvfsGH~H~~~~ 306 (383)
...+.+++++++++++||||+|.+..
T Consensus 187 ~~~~~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 187 SSKFKDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred hHHHHHHHHhcCCcEEEeCCccCCCc
Confidence 11277889999999999999999876
No 14
>PLN02533 probable purple acid phosphatase
Probab=99.85 E-value=8.6e-20 Score=182.22 Aligned_cols=207 Identities=12% Similarity=0.134 Sum_probs=124.5
Q ss_pred CCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCC
Q 016783 50 GVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFL 129 (383)
Q Consensus 50 ~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~ 129 (383)
..+++|++++|.|... +.. +.+ +.+++.+||+|+++|||++.+.. ...|....+.+..+. .
T Consensus 137 ~~~~~f~v~GDlG~~~----~~~---------~tl-~~i~~~~pD~vl~~GDl~y~~~~--~~~wd~f~~~i~~l~---s 197 (427)
T PLN02533 137 KFPIKFAVSGDLGTSE----WTK---------STL-EHVSKWDYDVFILPGDLSYANFY--QPLWDTFGRLVQPLA---S 197 (427)
T ss_pred CCCeEEEEEEeCCCCc----ccH---------HHH-HHHHhcCCCEEEEcCccccccch--HHHHHHHHHHhhhHh---h
Confidence 3689999999987532 110 112 23456799999999999975432 233444333222222 2
Q ss_pred CCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCC------CCCCceEEECCEEEEEecccccccCCCccccchHHHHhH
Q 016783 130 GVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLD------SSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIET 203 (383)
Q Consensus 130 ~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~------~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~ 203 (383)
.+|+++++||||........+.....|.+.|..+. ...+|+|++|+++||+|||..... ....|++|
T Consensus 198 ~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~-------~~~~Q~~W 270 (427)
T PLN02533 198 QRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFE-------PGSEQYQW 270 (427)
T ss_pred cCceEEeCccccccccccccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCcccc-------CchHHHHH
Confidence 58999999999986421111111233444454221 135789999999999999975211 12458888
Q ss_pred hhHHHHHhhccccccccccccchhhhhccCCCCC-CEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChH
Q 016783 204 ESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSG-PVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLN 282 (383)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e 282 (383)
++++|... .....+ .|+++|+|+|....... . +......++
T Consensus 271 Le~dL~~~--------------------~r~~~pwiIv~~H~P~y~s~~~~~---~---------------~~~~~~~r~ 312 (427)
T PLN02533 271 LENNLKKI--------------------DRKTTPWVVAVVHAPWYNSNEAHQ---G---------------EKESVGMKE 312 (427)
T ss_pred HHHHHHhh--------------------cccCCCEEEEEeCCCeeecccccC---C---------------cchhHHHHH
Confidence 87766420 112233 37889999986422000 0 000011245
Q ss_pred HHHHHHHHcCCceEEeccCCCCceee-------cCCCceEEEecc
Q 016783 283 ATEYIFQALKPKIIFSAHAHEFCDYT-------HSDGTREVTVSA 320 (383)
Q Consensus 283 ~~~~ll~~~~v~lvfsGH~H~~~~~~-------~~~~~~eitv~S 320 (383)
.+.+||.+++|+++||||+|.|.+.. ...+..++++++
T Consensus 313 ~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~ 357 (427)
T PLN02533 313 SMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGD 357 (427)
T ss_pred HHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCC
Confidence 67899999999999999999987542 112455666664
No 15
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.83 E-value=3.4e-19 Score=162.51 Aligned_cols=200 Identities=15% Similarity=0.193 Sum_probs=116.7
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
++|++++|+|+..... ...+. ...+.+.+.+++.+||+|+++|||++.+.. .++|....+.++.+-+ .++|
T Consensus 1 f~~~~~~D~q~~~~~~--~~~~~---~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~--~~~~~~~~~~~~~l~~--~~~p 71 (214)
T cd07399 1 FTLAVLPDTQYYTESY--PEVFD---AQTDWIVDNAEALNIAFVLHLGDIVDDGDN--DAEWEAADKAFARLDK--AGIP 71 (214)
T ss_pred CEEEEecCCCcCCcCC--HHHHH---HHHHHHHHHHHHcCCCEEEECCCccCCCCC--HHHHHHHHHHHHHHHH--cCCc
Confidence 5899999999964321 11111 111223444567899999999999997652 3455554444443321 3689
Q ss_pred EEEecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhHHHHHhh
Q 016783 133 FHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDLRMEA 212 (383)
Q Consensus 133 ~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 212 (383)
+++++||||. ++.+|+.. +++|++|+++.|.
T Consensus 72 ~~~~~GNHD~-----------------------------------~~~ld~~~-----------~~~ql~WL~~~L~--- 102 (214)
T cd07399 72 YSVLAGNHDL-----------------------------------VLALEFGP-----------RDEVLQWANEVLK--- 102 (214)
T ss_pred EEEECCCCcc-----------------------------------hhhCCCCC-----------CHHHHHHHHHHHH---
Confidence 9999999992 12223221 1347777765442
Q ss_pred ccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCcccccc--CChHHHHHHHHH
Q 016783 213 KGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHA--VPLNATEYIFQA 290 (383)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~--l~~e~~~~ll~~ 290 (383)
..++.+.|+++|+|++.... ..+.. .++.. -..+...+++++
T Consensus 103 -------------------~~~~~~~iv~~H~p~~~~~~----~~~~~-------------~~~~~~~~~~~~~~~ll~~ 146 (214)
T cd07399 103 -------------------KHPDRPAILTTHAYLNCDDS----RPDSI-------------DYDSDVNDGQQIWDKLVKK 146 (214)
T ss_pred -------------------HCCCCCEEEEecccccCCCC----cCccc-------------ccccccccHHHHHHHHHhC
Confidence 12345569999999885322 10000 00101 123356788888
Q ss_pred c-CCceEEeccCCCCceeecC--C--C--ceEEEecceeccCCCCCcEEEEEEeCCCceEEEe
Q 016783 291 L-KPKIIFSAHAHEFCDYTHS--D--G--TREVTVSAMTWKARDDPGFVIANFHGNGRGVSVS 346 (383)
Q Consensus 291 ~-~v~lvfsGH~H~~~~~~~~--~--~--~~eitv~S~s~~~g~~pgy~ll~i~~~~~~~~~~ 346 (383)
+ ++++|||||+|.+...... + | +..+-+.--....|++|.|+++++++++.++.++
T Consensus 147 ~~~V~~v~~GH~H~~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~ 209 (214)
T cd07399 147 NDNVFMVLSGHVHGAGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVR 209 (214)
T ss_pred CCCEEEEEccccCCCceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEE
Confidence 8 7999999999998765541 1 1 2222111101123467899999999886455544
No 16
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.80 E-value=2.1e-18 Score=164.97 Aligned_cols=208 Identities=15% Similarity=0.103 Sum_probs=123.0
Q ss_pred HHHHHHHhhC--CCCEEEEcCCCCCCCCCCChhcHHH--HHHHHHHhhc-CCCCCcEEEecCCCCCCCCCCCCh-----h
Q 016783 82 KFFRKSFHTL--NPDMLLVLGDVSAKGSELTRSDWLP--VLDRFHQMLG-TFLGVPFHVLLGDRDVGECSGLDT-----G 151 (383)
Q Consensus 82 ~~~~~~~~~~--~PD~vi~~GDl~d~~~~~~~~~~~~--~~~~~~~i~~-~~~~~p~~~v~GNHD~~~~~~~~~-----~ 151 (383)
+...+.+++. +||+||++||+++.+.+....+... ..+.+.+.++ ...++|++.++||||....+.... .
T Consensus 56 ~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~ 135 (296)
T cd00842 56 ESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSW 135 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccH
Confidence 3333445555 8999999999998765432111111 1122222222 124789999999999954332211 1
Q ss_pred HHHHHHhhCC---CC------CCCCCceEE-ECCEEEEEecccccccCCCcc----ccchHHHHhHhhHHHHHhhccccc
Q 016783 152 SVDWIAGNFP---GL------DSSGCGAFE-ISNISFLSLNAVALLCGNNKL----RFSVEKVIETESIDLRMEAKGSAE 217 (383)
Q Consensus 152 ~~~~f~~~f~---~~------~~~~~~~~~-~~~v~fi~Lds~~~~~~~~~~----~~~~~~~l~~~~~~l~~~~~~~~~ 217 (383)
..+.+.+.|. +. ....+|++. .+++++|+|||.......... ......|++|++.+|...
T Consensus 136 ~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a------ 209 (296)
T cd00842 136 LYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEA------ 209 (296)
T ss_pred HHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHH------
Confidence 1122222221 10 113457777 799999999999764332111 122356777776655421
Q ss_pred cccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHHHHcC--Cce
Q 016783 218 AVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIFQALK--PKI 295 (383)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~~~~--v~l 295 (383)
...+.+.+|++|+|+..... ... ....+...+|++++. +.+
T Consensus 210 --------------~~~~~~v~I~~HiPp~~~~~---~~~--------------------~~~~~~~~~ii~~y~~~i~~ 252 (296)
T cd00842 210 --------------EQAGEKVWIIGHIPPGVNSY---DTL--------------------ENWSERYLQIINRYSDTIAG 252 (296)
T ss_pred --------------HHCCCeEEEEeccCCCCccc---ccc--------------------hHHHHHHHHHHHHHHHhhhe
Confidence 11334557899999876321 000 012346788999986 678
Q ss_pred EEeccCCCCceeecCC-------CceEEEecceeccCCCCCcEE
Q 016783 296 IFSAHAHEFCDYTHSD-------GTREVTVSAMTWKARDDPGFV 332 (383)
Q Consensus 296 vfsGH~H~~~~~~~~~-------~~~eitv~S~s~~~g~~pgy~ 332 (383)
+|+||+|......... ....+.+||++-..+++|||+
T Consensus 253 ~~~GH~H~d~~~~~~~~~~~~~~~~~~~~~psitp~~~~nP~~r 296 (296)
T cd00842 253 QFFGHTHRDEFRVFYDDNDTGEPINVALIAPSVTPYSGNNPGFR 296 (296)
T ss_pred eeecccccceEEEEeCCCCCCCceEEEEecCccCcCCCCCCCCC
Confidence 9999999987544321 367789999998788899984
No 17
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.80 E-value=6.1e-18 Score=156.19 Aligned_cols=209 Identities=14% Similarity=0.073 Sum_probs=117.8
Q ss_pred EEEEecCCCCCCCC---CcccccchHHHHHHHHHHHHhhC--CCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCC
Q 016783 55 VMMVANLLLVGSDS---GFVDRHFRDYYMAKFFRKSFHTL--NPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFL 129 (383)
Q Consensus 55 i~~isD~hl~~~~~---~~~~~~~~~~~l~~~~~~~~~~~--~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~ 129 (383)
|.++||+|+..... ..+.+. ...+.+.+.+.++.. +||+|+++|||++.+.. +++....+.+.+.
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~--~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~---~~~~~~l~~l~~l----- 70 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPE--WKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL---EEAKLDLAWIDAL----- 70 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCcc--HHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh---HHHHHHHHHHHhC-----
Confidence 46899999963211 111111 123445555555555 99999999999975532 2222323333322
Q ss_pred CCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCC--CCCCceEEECCEEEEEecccccccCCC------cccc----ch
Q 016783 130 GVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLD--SSGCGAFEISNISFLSLNAVALLCGNN------KLRF----SV 197 (383)
Q Consensus 130 ~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~--~~~~~~~~~~~v~fi~Lds~~~~~~~~------~~~~----~~ 197 (383)
..|+++||||||+.... .+++++.+.... ...+.++.++++.|++++.-.+..... .... ..
T Consensus 71 ~~~v~~V~GNHD~~~~~------~~~~~~~l~~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (232)
T cd07393 71 PGTKVLLKGNHDYWWGS------ASKLRKALEESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIF 144 (232)
T ss_pred CCCeEEEeCCccccCCC------HHHHHHHHHhcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHH
Confidence 34799999999983211 233443332211 011467888999999987422221110 0000 11
Q ss_pred HHHHhHhhHHHHHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccc
Q 016783 198 EKVIETESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLH 277 (383)
Q Consensus 198 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~ 277 (383)
+.++.|++..+... .......+.|+++|+|++....
T Consensus 145 ~~~l~~l~~~L~~~------------------~~~~~~~~~i~~~H~p~~~~~~-------------------------- 180 (232)
T cd07393 145 ERELERLELSLKAA------------------KKREKEKIKIVMLHYPPANENG-------------------------- 180 (232)
T ss_pred HHHHHHHHHHHHHH------------------HhCCCCCCEEEEECCCCcCCCC--------------------------
Confidence 22333333322210 0001123469999999865311
Q ss_pred cCChHHHHHHHHHcCCceEEeccCCCCceee----cCCCceEEEecceeccC
Q 016783 278 AVPLNATEYIFQALKPKIIFSAHAHEFCDYT----HSDGTREVTVSAMTWKA 325 (383)
Q Consensus 278 ~l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~----~~~~~~eitv~S~s~~~ 325 (383)
+.+....++++.+++++++||+|...... ..+|++++++|+.|+++
T Consensus 181 --~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~~ 230 (232)
T cd07393 181 --DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLNF 230 (232)
T ss_pred --CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhcCc
Confidence 12245678888899999999999986533 13579999999999876
No 18
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.75 E-value=1.1e-16 Score=142.30 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=100.7
Q ss_pred EEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEE
Q 016783 55 VMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFH 134 (383)
Q Consensus 55 i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~ 134 (383)
|+++||+|... . .+.+ ..++..+||+||++||+++.+.. ++ +..+ +.++. .++|++
T Consensus 1 i~~~sD~H~~~-~-----------~~~~---~~~~~~~~D~vv~~GDl~~~~~~---~~----~~~~-~~l~~-~~~p~~ 56 (188)
T cd07392 1 ILAISDIHGDV-E-----------KLEA---IILKAEEADAVIVAGDITNFGGK---EA----AVEI-NLLLA-IGVPVL 56 (188)
T ss_pred CEEEEecCCCH-H-----------HHHH---HHhhccCCCEEEECCCccCcCCH---HH----HHHH-HHHHh-cCCCEE
Confidence 58999999832 1 1111 23456789999999999997753 12 2223 33322 267999
Q ss_pred EecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhHHHHHhhcc
Q 016783 135 VLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDLRMEAKG 214 (383)
Q Consensus 135 ~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 214 (383)
+|+||||.... .+.+.... .. .....+.++++.|+++|+......... ....++++.++ ..
T Consensus 57 ~v~GNHD~~~~-------~~~~~~~~--~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~l~~~-~~------- 117 (188)
T cd07392 57 AVPGNCDTPEI-------LGLLTSAG--LN-LHGKVVEVGGYTFVGIGGSNPTPFNTP-IELSEEEIVSD-GR------- 117 (188)
T ss_pred EEcCCCCCHHH-------HHhhhcCc--Ee-cCCCEEEECCEEEEEeCCCCCCCCCCc-cccCHHHHHHh-hh-------
Confidence 99999997321 11111100 00 112567889999999997532111101 11223334332 00
Q ss_pred ccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHHHHcCCc
Q 016783 215 SAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIFQALKPK 294 (383)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~~~~v~ 294 (383)
+ ......+.|+++|+|++.... +... . ....+.+.+.+++++++|+
T Consensus 118 ----------l-----~~~~~~~~ilv~H~pp~~~~~------d~~~--------~-----~~~~g~~~l~~li~~~~~~ 163 (188)
T cd07392 118 ----------L-----NNLLAKNLILVTHAPPYGTAV------DRVS--------G-----GFHVGSKAIRKFIEERQPL 163 (188)
T ss_pred ----------h-----hccCCCCeEEEECCCCcCCcc------cccC--------C-----CCccCCHHHHHHHHHhCCc
Confidence 0 112345669999999875311 1000 0 0012345678899999999
Q ss_pred eEEeccCCCCcee
Q 016783 295 IIFSAHAHEFCDY 307 (383)
Q Consensus 295 lvfsGH~H~~~~~ 307 (383)
++||||+|.....
T Consensus 164 ~~l~GH~H~~~~~ 176 (188)
T cd07392 164 LCICGHIHESRGV 176 (188)
T ss_pred EEEEeccccccce
Confidence 9999999998643
No 19
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.73 E-value=2.2e-16 Score=146.43 Aligned_cols=212 Identities=13% Similarity=0.118 Sum_probs=109.1
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcE
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPF 133 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~ 133 (383)
||+++||+|+.. . ....+..+.+ +.+.+++.+||+|+++|||++... +..+..+.+.++ .++|+
T Consensus 1 ki~~iSDlH~~~-~-----~~~~~~~l~~-~~~~~~~~~~d~vv~~GDl~~~~~-----~~~~~~~~l~~~----~~~pv 64 (239)
T TIGR03729 1 KIAFSSDLHIDL-N-----HFDTEEMLET-LAQYLKKQKIDHLHIAGDISNDFQ-----RSLPFIEKLQEL----KGIKV 64 (239)
T ss_pred CEEEEEeecCCC-C-----CCCHHHHHHH-HHHHHHhcCCCEEEECCccccchh-----hHHHHHHHHHHh----cCCcE
Confidence 589999999831 1 1111222222 334455678999999999998531 112223333332 25799
Q ss_pred EEecCCCCCCCCCCCChhHHHHHHhhCCCCC-CCCCceEEECCEEEEEecccccc--cCCCc-----------------c
Q 016783 134 HVLLGDRDVGECSGLDTGSVDWIAGNFPGLD-SSGCGAFEISNISFLSLNAVALL--CGNNK-----------------L 193 (383)
Q Consensus 134 ~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~-~~~~~~~~~~~v~fi~Lds~~~~--~~~~~-----------------~ 193 (383)
++|+||||..... . .+.+++.+.... ......+..++++|++++.-... ++... .
T Consensus 65 ~~v~GNHD~~~~~--~---~~~~~~~~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (239)
T TIGR03729 65 TFNAGNHDMLKDL--T---YEEIESNDSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIK 139 (239)
T ss_pred EEECCCCCCCCCC--C---HHHHHhccchhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccC
Confidence 9999999984211 1 122333221100 00112233489999999842110 00000 0
Q ss_pred ccchHHHHhHhhHHHHHhhccccccccccccchhhhhcc--CCCCCCEEEeeccCccCCC-CCCCCCcCCcccccCCCCC
Q 016783 194 RFSVEKVIETESIDLRMEAKGSAEAVHDFSNFAWREKAM--SSKSGPVLLLHFPLHRTME-SQCGSQISNTREKRRFSEP 270 (383)
Q Consensus 194 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Il~~H~Pl~~~~~-~~c~~~~~~~~~~~~~~~~ 270 (383)
....+.++.. ++++|+++.. ....+.||++|+|+..... ..++ .
T Consensus 140 ~~~~~~~~~~-------------------~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~~~~~--------------~ 186 (239)
T TIGR03729 140 RPMSDPERTA-------------------IVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIYVPMD--------------H 186 (239)
T ss_pred CCCChHHHHH-------------------HHHHHHHHHHHhcCCCCEEEEEcccchHHHhcCCCC--------------C
Confidence 0001111111 1234443322 2345569999999865211 0000 0
Q ss_pred CCccccc-cCChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEec
Q 016783 271 GPYGLLH-AVPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVS 319 (383)
Q Consensus 271 g~y~~~~-~l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~ 319 (383)
..|...+ ..+.+.+.+++++++|+++++||+|.......-++++.++++
T Consensus 187 ~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~~~i~~~~~~~~~ 236 (239)
T TIGR03729 187 RRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGPLTIGGTTYHNRP 236 (239)
T ss_pred cchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCCCEEECCEEEEecC
Confidence 0011111 234456788888899999999999999743222467766654
No 20
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.72 E-value=9.6e-16 Score=149.18 Aligned_cols=228 Identities=14% Similarity=0.151 Sum_probs=138.4
Q ss_pred CceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCC-CChhcHHHHHHHHHHhhcC-C
Q 016783 51 VDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSE-LTRSDWLPVLDRFHQMLGT-F 128 (383)
Q Consensus 51 ~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~-~~~~~~~~~~~~~~~i~~~-~ 128 (383)
..++++.++|.-- |. .....+.+++.+..+..++|+|+-+||.+++|-. .+|+.|++ .|.+++.. .
T Consensus 25 ~~l~F~~vGDwG~-g~--------~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~---~FE~vY~~~s 92 (394)
T PTZ00422 25 AQLRFASLGNWGT-GS--------KQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKH---CFENVYSEES 92 (394)
T ss_pred CeEEEEEEecCCC-Cc--------hhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHh---hHhhhccCcc
Confidence 4689999999852 21 1223455666666778899999999999976643 34666654 46667653 2
Q ss_pred --CCCcEEEecCCCCCCCCCCCChhHHHHHHh---------------------hCCCCCCCCCce----EEE--------
Q 016783 129 --LGVPFHVLLGDRDVGECSGLDTGSVDWIAG---------------------NFPGLDSSGCGA----FEI-------- 173 (383)
Q Consensus 129 --~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~---------------------~f~~~~~~~~~~----~~~-------- 173 (383)
..+|++.|+||||+.+.... .+.++.+ .|..++ .+|. |..
T Consensus 93 ~~L~~Pwy~vLGNHDy~Gn~~A---Qi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--~yY~~~~~f~~~~~~~~~~ 167 (394)
T PTZ00422 93 GDMQIPFFTVLGQADWDGNYNA---ELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--YWYHYFTHFTDTSGPSLLK 167 (394)
T ss_pred hhhCCCeEEeCCcccccCCchh---hhccccccccccccccccccccccccCCCccCCc--hhheeeeeeeccccccccc
Confidence 56899999999998432211 0111111 111111 1232 222
Q ss_pred -----CCEEEEEecccccccCCCccccchHHHHhHhhHHHHHhhccccccccccccchhhhhccCCCCCCEEEeeccCcc
Q 016783 174 -----SNISFLSLNAVALLCGNNKLRFSVEKVIETESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHR 248 (383)
Q Consensus 174 -----~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~ 248 (383)
..+.|+++||..+.... +.......+.+|+..+|.. .......+||+.|||++.
T Consensus 168 ~~~~~~~v~fifiDT~~l~~~~-~~~~~~~~~w~~L~~~L~~--------------------a~k~a~WkIVvGHhPIyS 226 (394)
T PTZ00422 168 SGHKDMSVAFIFIDTWILSSSF-PYKKVSERAWQDLKATLEY--------------------APKIADYIIVVGDKPIYS 226 (394)
T ss_pred ccCCCCEEEEEEEECchhcccC-CccccCHHHHHHHHHHHHh--------------------hccCCCeEEEEecCceee
Confidence 12899999998775321 1111122334444333310 111234569999999997
Q ss_pred CCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEeccee--ccCC
Q 016783 249 TMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMT--WKAR 326 (383)
Q Consensus 249 ~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s--~~~g 326 (383)
... ++. ... | ...+.+||++++|++++|||+|.++.... +++.++++++-+ ++..
T Consensus 227 sG~------------------hg~--~~~-L-~~~L~PLL~ky~VdlYisGHDH~lq~i~~-~gt~yIvSGaGs~~~~~~ 283 (394)
T PTZ00422 227 SGS------------------SKG--DSY-L-SYYLLPLLKDAQVDLYISGYDRNMEVLTD-EGTAHINCGSGGNSGRKS 283 (394)
T ss_pred cCC------------------CCC--CHH-H-HHHHHHHHHHcCcCEEEEccccceEEecC-CCceEEEeCccccccCCC
Confidence 422 010 000 1 22578999999999999999999987654 578999888633 3210
Q ss_pred -----------CCCcEEEEEEeCC
Q 016783 327 -----------DDPGFVIANFHGN 339 (383)
Q Consensus 327 -----------~~pgy~ll~i~~~ 339 (383)
..+||..+++..+
T Consensus 284 ~~~~~~s~F~~~~~GF~~~~l~~~ 307 (394)
T PTZ00422 284 IMKNSKSLFYSEDIGFCIHELNAE 307 (394)
T ss_pred CCCCCCcceecCCCCEEEEEEecC
Confidence 3478999997765
No 21
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.71 E-value=1.1e-15 Score=145.08 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=111.3
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhc-CCCCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLG-TFLGV 131 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~-~~~~~ 131 (383)
++|++|||+|+.... ..... +..++.+.++..+||+||++|||++.|.. + .++.+.+++. .....
T Consensus 1 ~~i~~isD~H~~~~~------~~~~~-~~~~~~~~i~~~~~D~~v~tGDl~~~~~~---~----~~~~~~~~l~~~~~~~ 66 (301)
T COG1409 1 MRIAHISDLHLGALG------VDSEE-LLEALLAAIEQLKPDLLVVTGDLTNDGEP---E----EYRRLKELLARLELPA 66 (301)
T ss_pred CeEEEEecCcccccc------cchHH-HHHHHHHHHhcCCCCEEEEccCcCCCCCH---H----HHHHHHHHHhhccCCC
Confidence 589999999996311 11222 22334455778899999999999998642 3 3444555554 23357
Q ss_pred cEEEecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEE-CCEEEEEecccccccCCCccccchHHHHhHhhHHHHH
Q 016783 132 PFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEI-SNISFLSLNAVALLCGNNKLRFSVEKVIETESIDLRM 210 (383)
Q Consensus 132 p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~-~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l~~ 210 (383)
|+++||||||..... ...|.+.+...+. ....... ++++++++||........ .....|+.|+...+..
T Consensus 67 ~~~~vpGNHD~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~G---~~~~~q~~~l~~~l~~ 136 (301)
T COG1409 67 PVIVVPGNHDARVVN------GEAFSDQFFNRYA-VLVGACSSGGWRVIGLDSSVPGVPLG---RLGAEQLDWLEEALAA 136 (301)
T ss_pred ceEeeCCCCcCCchH------HHHhhhhhcccCc-ceEeeccCCceEEEEecCCCCCCCCC---EECHHHHHHHHHHHHh
Confidence 899999999985422 2334444433221 0011112 678999999997653222 2344577776554431
Q ss_pred hhccccccccccccchhhhhccCCCC-CCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHHH
Q 016783 211 EAKGSAEAVHDFSNFAWREKAMSSKS-GPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIFQ 289 (383)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~ 289 (383)
. ..... ..|+++|+|+...... . +...+.+......++.
T Consensus 137 ~--------------------~~~~~~~~v~~~hh~~~~~~~~----~----------------~~~~l~~~~~~~~~~~ 176 (301)
T COG1409 137 A--------------------PERAKDTVVVLHHHPLPSPGTG----V----------------DRVALRDAGELLDVLI 176 (301)
T ss_pred C--------------------ccccCceEEEecCCCCCCCCCc----c----------------ceeeeecchhHHHHHH
Confidence 0 01111 2366777776653220 0 1111223445667777
Q ss_pred HcC--CceEEeccCCCCc
Q 016783 290 ALK--PKIIFSAHAHEFC 305 (383)
Q Consensus 290 ~~~--v~lvfsGH~H~~~ 305 (383)
..+ +++||+||.|...
T Consensus 177 ~~~~~v~~vl~GH~H~~~ 194 (301)
T COG1409 177 AHGNDVRLVLSGHIHLAA 194 (301)
T ss_pred hcCCceEEEEeCcccccc
Confidence 777 9999999999983
No 22
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.71 E-value=4.8e-16 Score=140.17 Aligned_cols=86 Identities=16% Similarity=0.291 Sum_probs=54.0
Q ss_pred ceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 52 DLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 52 ~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
.+||+++||+|++...... .....+....+.+.++++..+||+||++||+++.....+ +.+ ..+..+.+.+. ..++
T Consensus 2 ~~ki~~isDlH~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~-~~~-~~~~~~~~~l~-~~~~ 77 (199)
T cd07383 2 KFKILQFADLHFGEGEGTC-EGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTND-NST-SALDKAVSPMI-DRKI 77 (199)
T ss_pred ceEEEEEeeecccCCCCCC-CcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCch-HHH-HHHHHHHHHHH-HcCC
Confidence 5899999999996543210 011222234455666777889999999999998765422 011 11222222222 1368
Q ss_pred cEEEecCCCC
Q 016783 132 PFHVLLGDRD 141 (383)
Q Consensus 132 p~~~v~GNHD 141 (383)
|+++++||||
T Consensus 78 p~~~~~GNHD 87 (199)
T cd07383 78 PWAATFGNHD 87 (199)
T ss_pred CEEEECccCC
Confidence 9999999999
No 23
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.70 E-value=4.5e-16 Score=147.03 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCC
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~ 128 (383)
..+++||+++||+|+.... ....+.+ +.+.+++.+||+|+++||++|.+.....+++ .+.++++-+
T Consensus 46 ~~~~~rI~~lSDlH~~~~~--------~~~~l~~-~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~---~~~L~~L~~-- 111 (271)
T PRK11340 46 NAAPFKILFLADLHYSRFV--------PLSLISD-AIALGIEQKPDLILLGGDYVLFDMPLNFSAF---SDVLSPLAE-- 111 (271)
T ss_pred CCCCcEEEEEcccCCCCcC--------CHHHHHH-HHHHHHhcCCCEEEEccCcCCCCccccHHHH---HHHHHHHhh--
Confidence 4457999999999994221 1122333 3345678899999999999984322222222 233333321
Q ss_pred CCCcEEEecCCCCCCC
Q 016783 129 LGVPFHVLLGDRDVGE 144 (383)
Q Consensus 129 ~~~p~~~v~GNHD~~~ 144 (383)
..|+++|+||||+..
T Consensus 112 -~~pv~~V~GNHD~~~ 126 (271)
T PRK11340 112 -CAPTFACFGNHDRPV 126 (271)
T ss_pred -cCCEEEecCCCCccc
Confidence 369999999999853
No 24
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.68 E-value=7.5e-15 Score=145.07 Aligned_cols=130 Identities=14% Similarity=0.033 Sum_probs=86.9
Q ss_pred CCceEE-ECCEEEEEecccccccCCCccccchHHHHhHhhHHHHHhhccccccccccccchhhhhccCCCCCCEEEeecc
Q 016783 167 GCGAFE-ISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFP 245 (383)
Q Consensus 167 ~~~~~~-~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~P 245 (383)
.||+|+ .++++||+|||....+.. ....+++|+.|++++|. ..+.++.||++|||
T Consensus 292 ~YYSFd~~ggvrfIvLDSt~~~G~~--~G~L~eeQL~WLeqeLa----------------------~a~~k~VVVf~HHP 347 (496)
T TIGR03767 292 GYYTFDIAGGVRGISMDTTNRAGGD--EGSLGQTQFKWIKDTLR----------------------ASSDTLFVLFSHHT 347 (496)
T ss_pred ceEEEEeECCEEEEEEeCCCcCCCc--CCccCHHHHHHHHHHHh----------------------cCCCCCEEEEECCC
Confidence 479999 899999999998643222 23456778888766553 12345569999999
Q ss_pred CccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHHHHc-CCceEEeccCCCCceeecC--------CCceEE
Q 016783 246 LHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIFQAL-KPKIIFSAHAHEFCDYTHS--------DGTREV 316 (383)
Q Consensus 246 l~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~~~-~v~lvfsGH~H~~~~~~~~--------~~~~ei 316 (383)
++.... .+.+... ......+.+.+.++|+++ +|.++||||+|......+. .+..||
T Consensus 348 p~s~g~---~~~Dp~~------------pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI 412 (496)
T TIGR03767 348 SWSMVN---ELTDPVD------------PGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEI 412 (496)
T ss_pred Cccccc---ccccccc------------ccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEE
Confidence 886322 1111100 001123566788999998 7999999999998755442 368889
Q ss_pred Eecce-eccCCCCCcEEEEEEeCC
Q 016783 317 TVSAM-TWKARDDPGFVIANFHGN 339 (383)
Q Consensus 317 tv~S~-s~~~g~~pgy~ll~i~~~ 339 (383)
++.|. +|.. =|++++|..+
T Consensus 413 ~TaSlvdfPq----~~Ri~Ei~~n 432 (496)
T TIGR03767 413 NTASHIDFPQ----QGRIIELADN 432 (496)
T ss_pred eccccccCCC----CceEEEEEeC
Confidence 98885 3422 5889988643
No 25
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1e-15 Score=149.32 Aligned_cols=196 Identities=16% Similarity=0.192 Sum_probs=122.3
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCC
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~ 128 (383)
...+.++++++|+-......+. ........+||+|++.|||.......+ ..|.+.. |+.+-++
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s~-------------~~~~~~~~k~d~vlhiGDlsYa~~~~n-~~wD~f~-r~vEp~A-- 206 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTST-------------LRNQEENLKPDAVLHIGDLSYAMGYSN-WQWDEFG-RQVEPIA-- 206 (452)
T ss_pred ccCceeEEEEccccccccccch-------------HhHHhcccCCcEEEEecchhhcCCCCc-cchHHHH-hhhhhhh--
Confidence 3468999999998664322110 001112337999999999986544322 4555433 2333222
Q ss_pred CCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCC------CCCCceEEECCEEEEEecccccccCCCccccchHHHHh
Q 016783 129 LGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLD------SSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIE 202 (383)
Q Consensus 129 ~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~------~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~ 202 (383)
..+|.+++.||||+.+.... ....|...|..+. ..++|+|++|++|||+|+|....+- .....|++
T Consensus 207 s~vPymv~~GNHE~d~~~~~---~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~-----~~~~~QY~ 278 (452)
T KOG1378|consen 207 SYVPYMVCSGNHEIDWPPQP---CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNF-----LKGTAQYQ 278 (452)
T ss_pred ccCceEEecccccccCCCcc---cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccc-----cccchHHH
Confidence 35899999999999765422 1233444443321 1268999999999999999976421 12235888
Q ss_pred HhhHHHHHhhccccccccccccchhhhhccCCCCCC--EEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCC
Q 016783 203 TESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGP--VLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVP 280 (383)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~ 280 (383)
|++++|.. .+..+.| |++.|.|+|...... -.++ | .-..-
T Consensus 279 WL~~dL~~---------------------v~r~~tPWlIv~~HrP~Y~S~~~~--~~re-----------G----~~~~~ 320 (452)
T KOG1378|consen 279 WLERDLAS---------------------VDRKKTPWLIVQGHRPMYCSSNDA--HYRE-----------G----EFESM 320 (452)
T ss_pred HHHHHHHH---------------------hcccCCCeEEEEecccceecCCch--hhcc-----------C----cchhh
Confidence 88777642 1122133 889999999754310 0011 1 00122
Q ss_pred hHHHHHHHHHcCCceEEeccCCCCcee
Q 016783 281 LNATEYIFQALKPKIIFSAHAHEFCDY 307 (383)
Q Consensus 281 ~e~~~~ll~~~~v~lvfsGH~H~~~~~ 307 (383)
++.++++|-+++||++|.||.|.|++.
T Consensus 321 ~~~LE~l~~~~~VDvvf~GHvH~YER~ 347 (452)
T KOG1378|consen 321 REGLEPLFVKYKVDVVFWGHVHRYERF 347 (452)
T ss_pred HHHHHHHHHHhceeEEEeccceehhcc
Confidence 456899999999999999999999864
No 26
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.64 E-value=3.7e-15 Score=127.13 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=47.8
Q ss_pred EEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEE
Q 016783 55 VMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFH 134 (383)
Q Consensus 55 i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~ 134 (383)
|+++||+|++...... .......+ +.+.+.++..+||+|+++||+++.+.. ++|....+.+.++-. ..+|++
T Consensus 1 il~isD~Hl~~~~~~~--~~~~~~~l-~~~~~~~~~~~~d~vi~~GDl~~~~~~---~~~~~~~~~~~~l~~--~~~~~~ 72 (144)
T cd07400 1 ILHLSDLHFGPERKPE--LLALLSLL-DRLLAEIKALDPDLVVITGDLTQRGLP---EEFEEAREFLDALPA--PLEPVL 72 (144)
T ss_pred CeEeCccCCCCCcchh--HHHHHHHH-HHHHHHHhccCCCEEEECCCCCCCCCH---HHHHHHHHHHHHccc--cCCcEE
Confidence 6899999996543211 11111111 223445667899999999999997653 333332222333211 115999
Q ss_pred EecCCCCC
Q 016783 135 VLLGDRDV 142 (383)
Q Consensus 135 ~v~GNHD~ 142 (383)
+|+||||.
T Consensus 73 ~v~GNHD~ 80 (144)
T cd07400 73 VVPGNHDV 80 (144)
T ss_pred EeCCCCeE
Confidence 99999996
No 27
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.63 E-value=2.1e-16 Score=135.71 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=48.3
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
|||+++||+|+...... . ..+.+.......+||+||++||+++.+... ..+......+... ....+|
T Consensus 1 ~ri~~isD~H~~~~~~~--------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~--~~~~~~~~~~~~~--~~~~~~ 67 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS--------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPS--EEWRAQFWFFIRL--LNPKIP 67 (200)
T ss_dssp EEEEEEEBBTTTHHHHC--------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHH--HHHHHHHHHHHHH--HHTTTT
T ss_pred CeEEEEcCCCCCCcchh--------H-HHHHHHHHhccCCCCEEEeecccccccccc--ccchhhhccchhh--hhcccc
Confidence 69999999999542210 1 223344556788999999999999987531 1111111001111 123689
Q ss_pred EEEecCCCCCC
Q 016783 133 FHVLLGDRDVG 143 (383)
Q Consensus 133 ~~~v~GNHD~~ 143 (383)
+++++||||..
T Consensus 68 ~~~~~GNHD~~ 78 (200)
T PF00149_consen 68 VYFILGNHDYY 78 (200)
T ss_dssp EEEEE-TTSSH
T ss_pred ccccccccccc
Confidence 99999999985
No 28
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.61 E-value=2.9e-13 Score=123.59 Aligned_cols=205 Identities=9% Similarity=0.059 Sum_probs=111.5
Q ss_pred ceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 52 DLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 52 ~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
..||+.+||+|= .. . .+.+ +.+..++.+||+||++||+++.+. ..+++.+..+.+.+ .++
T Consensus 4 ~~kIl~iSDiHg--n~----~------~le~-l~~~~~~~~~D~vv~~GDl~~~g~--~~~~~~~~l~~l~~-----l~~ 63 (224)
T cd07388 4 VRYVLATSNPKG--DL----E------ALEK-LVGLAPETGADAIVLIGNLLPKAA--KSEDYAAFFRILGE-----AHL 63 (224)
T ss_pred eeEEEEEEecCC--CH----H------HHHH-HHHHHhhcCCCEEEECCCCCCCCC--CHHHHHHHHHHHHh-----cCC
Confidence 568999999994 11 0 1222 233345578999999999999762 12333333333322 257
Q ss_pred cEEEecCCCCCCCCCCCChhHHHHHHhhCC------CCCCCCCceEEE-CCEEEEEecccccccCCCccccchHHHH---
Q 016783 132 PFHVLLGDRDVGECSGLDTGSVDWIAGNFP------GLDSSGCGAFEI-SNISFLSLNAVALLCGNNKLRFSVEKVI--- 201 (383)
Q Consensus 132 p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~------~~~~~~~~~~~~-~~v~fi~Lds~~~~~~~~~~~~~~~~~l--- 201 (383)
|+++||||||-.. .+.+++.|+ ...........+ +++.|++++...... ...+|+++
T Consensus 64 pv~~V~GNhD~~v--------~~~l~~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~~-----~e~sE~e~~~~ 130 (224)
T cd07388 64 PTFYVPGPQDAPL--------WEYLREAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIADE-----GEPEEHEALRY 130 (224)
T ss_pred ceEEEcCCCChHH--------HHHHHHHhcccccCccceecCCCeEEecCCeEEEEecCCcCCC-----CCcCHHHHhhh
Confidence 9999999999631 122333332 100001134566 459999998554221 11123321
Q ss_pred -hHhhHHHHHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCC
Q 016783 202 -ETESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVP 280 (383)
Q Consensus 202 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~ 280 (383)
.|+...+.. .+ ......+.||++|+|.+-... + + .|
T Consensus 131 ~~~~~~~~l~-------------~~-----~~~~~~~~VLv~H~PP~g~g~---~-h------------~G--------- 167 (224)
T cd07388 131 PAWVAEYRLK-------------AL-----WELKDYRKVFLFHTPPYHKGL---N-E------------QG--------- 167 (224)
T ss_pred hhhHHHHHHH-------------HH-----HhCCCCCeEEEECCCCCCCCC---C-c------------cC---------
Confidence 221111110 01 011234559999999986411 0 0 12
Q ss_pred hHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCCCCCcEEEEEEeCC
Q 016783 281 LNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKARDDPGFVIANFHGN 339 (383)
Q Consensus 281 ~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g~~pgy~ll~i~~~ 339 (383)
.....+++++++|.+++|||+|...+ .. +++.-++.++.+ . -.|+++++++.
T Consensus 168 S~alr~~I~~~~P~l~i~GHih~~~~-~~-g~t~vvNpg~~~--~---g~~a~i~~~~~ 219 (224)
T cd07388 168 SHEVAHLIKTHNPLVVLVGGKGQKHE-LL-GASWVVVPGDLS--E---GRYALLDLRAR 219 (224)
T ss_pred HHHHHHHHHHhCCCEEEEcCCceeEE-Ee-CCEEEECCCccc--C---CcEEEEEecCc
Confidence 34677899999999999999993221 11 234433433432 2 25788888754
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.60 E-value=1.5e-14 Score=131.97 Aligned_cols=88 Identities=15% Similarity=0.222 Sum_probs=53.2
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHH---HHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCC
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKF---FRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLG 130 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (383)
||+++||+|++..... .....+.....++ +.+.+.+.+||+|+++||+++.... +.+.+....+.+.++.. .+
T Consensus 1 ~i~~~sD~Hlg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~-~~~~~~~~~~~~~~~~~--~~ 76 (223)
T cd00840 1 RFLHTADWHLGKPLKG-LSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNP-SPEALELLIEALRRLKE--AG 76 (223)
T ss_pred CeEEeccccCCccccC-cCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCC-CHHHHHHHHHHHHHHHH--CC
Confidence 6899999999643321 1110111112222 2334557799999999999997642 33334444444444321 26
Q ss_pred CcEEEecCCCCCCCC
Q 016783 131 VPFHVLLGDRDVGEC 145 (383)
Q Consensus 131 ~p~~~v~GNHD~~~~ 145 (383)
+|+++++||||....
T Consensus 77 ~~v~~~~GNHD~~~~ 91 (223)
T cd00840 77 IPVFIIAGNHDSPSR 91 (223)
T ss_pred CCEEEecCCCCCccc
Confidence 899999999998553
No 30
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.52 E-value=1.5e-13 Score=120.16 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=41.8
Q ss_pred EEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEE
Q 016783 55 VMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFH 134 (383)
Q Consensus 55 i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~ 134 (383)
|+++||+|+..... ... +.+.....+||+|+++||+++.+.. .++.. +.... ....|++
T Consensus 1 ~~~iSDlH~~~~~~---~~~---------~~~~~~~~~~d~li~~GDi~~~~~~---~~~~~----~~~~~--~~~~~v~ 59 (166)
T cd07404 1 IQYLSDLHLEFEDN---LAD---------LLNFPIAPDADILVLAGDIGYLTDA---PRFAP----LLLAL--KGFEPVI 59 (166)
T ss_pred CceEccccccCccc---ccc---------ccccCCCCCCCEEEECCCCCCCcch---HHHHH----HHHhh--cCCccEE
Confidence 57899999953221 000 1122346789999999999986542 22211 22222 2357999
Q ss_pred EecCCCCC
Q 016783 135 VLLGDRDV 142 (383)
Q Consensus 135 ~v~GNHD~ 142 (383)
+|+||||.
T Consensus 60 ~v~GNHD~ 67 (166)
T cd07404 60 YVPGNHEF 67 (166)
T ss_pred EeCCCcce
Confidence 99999997
No 31
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7e-13 Score=120.34 Aligned_cols=225 Identities=18% Similarity=0.203 Sum_probs=123.7
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCC-CCCC-CChhcHHHHHHHHHHhhc
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSA-KGSE-LTRSDWLPVLDRFHQMLG 126 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d-~~~~-~~~~~~~~~~~~~~~i~~ 126 (383)
+.+.++|++|+|+-..+ +|. ..+....+.++-+.+..|+|+-+||-+. +|-. ..|..|+ +.|.+|+.
T Consensus 40 ~dgslsflvvGDwGr~g---~~n-----qs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq---~sF~nIYT 108 (336)
T KOG2679|consen 40 SDGSLSFLVVGDWGRRG---SFN-----QSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQ---DSFENIYT 108 (336)
T ss_pred CCCceEEEEEcccccCC---chh-----HHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHH---hhhhhccc
Confidence 66889999999996433 221 1223333444456789999999999764 4432 2344443 46777776
Q ss_pred -CCCCCcEEEecCCCCCCCCC--CCChhHHHHHHhh--CCCCCCCCCceEEE--CCEEEEEecccccccCCCcccc-chH
Q 016783 127 -TFLGVPFHVLLGDRDVGECS--GLDTGSVDWIAGN--FPGLDSSGCGAFEI--SNISFLSLNAVALLCGNNKLRF-SVE 198 (383)
Q Consensus 127 -~~~~~p~~~v~GNHD~~~~~--~~~~~~~~~f~~~--f~~~~~~~~~~~~~--~~v~fi~Lds~~~~~~~~~~~~-~~~ 198 (383)
+...+|.|.|.||||+.+.- ++.+- .....+. |....+.....++. -++++.++|+..+..+.-+-++ ...
T Consensus 109 ~pSLQkpWy~vlGNHDyrGnV~AQls~~-l~~~d~RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~P 187 (336)
T KOG2679|consen 109 APSLQKPWYSVLGNHDYRGNVEAQLSPV-LRKIDKRWICPRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLP 187 (336)
T ss_pred CcccccchhhhccCccccCchhhhhhHH-HHhhccceecccHHhhcceeeeeeccccccchhhheecccccccccccCCh
Confidence 34567999999999995422 12111 1111111 11111000011121 2445556665554422211111 110
Q ss_pred HHHhHhhHHHHHhhccccccccccccchhhhhc--cCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCcccc
Q 016783 199 KVIETESIDLRMEAKGSAEAVHDFSNFAWREKA--MSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLL 276 (383)
Q Consensus 199 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~ 276 (383)
+ .. ..+. .+.|++.. +...+.+||+.|||+..... +|+ ..
T Consensus 188 R-~~-~~~~----------------~l~~le~~L~~S~a~wkiVvGHh~i~S~~~------------------HG~--T~ 229 (336)
T KOG2679|consen 188 R-VK-YLRA----------------LLSWLEVALKASRAKWKIVVGHHPIKSAGH------------------HGP--TK 229 (336)
T ss_pred H-HH-HHHH----------------HHHHHHHHHHHhhcceEEEecccceehhhc------------------cCC--hH
Confidence 0 00 0000 12233221 23456679999999987532 221 11
Q ss_pred ccCChHHHHHHHHHcCCceEEeccCCCCceeec-CCCceEEEecc--eeccC
Q 016783 277 HAVPLNATEYIFQALKPKIIFSAHAHEFCDYTH-SDGTREVTVSA--MTWKA 325 (383)
Q Consensus 277 ~~l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~-~~~~~eitv~S--~s~~~ 325 (383)
.| .+.+.+||+..+|++.++||+|.-+.... +.++..++.++ ..|+-
T Consensus 230 -eL-~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g 279 (336)
T KOG2679|consen 230 -EL-EKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRG 279 (336)
T ss_pred -HH-HHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCC
Confidence 11 33578899999999999999999886665 45788888875 44654
No 32
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.50 E-value=5.1e-13 Score=114.90 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC-CCCcEEEEEEeCC
Q 016783 283 ATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR-DDPGFVIANFHGN 339 (383)
Q Consensus 283 ~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g-~~pgy~ll~i~~~ 339 (383)
....++...+++++++||+|....... +++..++.+|+++... ..+||.+++++++
T Consensus 100 ~~~~~~~~~~~~~~~~GH~H~~~~~~~-~~~~~~~~Gs~~~~~~~~~~~~~i~~~~~~ 156 (156)
T PF12850_consen 100 ELREILSRENVDLVLHGHTHRPQVFKI-GGIHVINPGSIGGPRHGDQSGYAILDIEDK 156 (156)
T ss_dssp HHHHHHHHTTSSEEEESSSSSEEEEEE-TTEEEEEE-GSSS-SSSSSEEEEEEEETTT
T ss_pred hhhhhhcccCCCEEEcCCcccceEEEE-CCEEEEECCcCCCCCCCCCCEEEEEEEecC
Confidence 355677788999999999999987664 5799999999887655 3579999998753
No 33
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.49 E-value=6.7e-12 Score=122.31 Aligned_cols=88 Identities=18% Similarity=0.279 Sum_probs=52.6
Q ss_pred eEEEEEecCCCCCCCCCcccccchHH--HHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHH-HHHhhcCCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDY--YMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDR-FHQMLGTFL 129 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~-~~~i~~~~~ 129 (383)
+||+|+||+|++....+ ....+. ...+.+...+...+||+|+++||++|.....+.... ..... +.+.+. ..
T Consensus 1 MKilhiSD~HLG~~~~~---~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~-~~~~~~l~~~L~-~~ 75 (340)
T PHA02546 1 MKILLIGDQHLGVRKDD---PWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTM-NFVREKIFDLLK-EA 75 (340)
T ss_pred CeEEEEeeecCCCcCCC---hhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHH-HHHHHHHHHHHH-HC
Confidence 68999999999643211 111121 111223344567899999999999997543332222 11222 233332 23
Q ss_pred CCcEEEecCCCCCCCC
Q 016783 130 GVPFHVLLGDRDVGEC 145 (383)
Q Consensus 130 ~~p~~~v~GNHD~~~~ 145 (383)
++|+++++||||....
T Consensus 76 gi~v~~I~GNHD~~~~ 91 (340)
T PHA02546 76 GITLHVLVGNHDMYYK 91 (340)
T ss_pred CCeEEEEccCCCcccc
Confidence 7899999999998543
No 34
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.47 E-value=3.7e-13 Score=123.14 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=50.1
Q ss_pred ceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcC-CCC
Q 016783 52 DLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGT-FLG 130 (383)
Q Consensus 52 ~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~-~~~ 130 (383)
++||+++||+|+..... ...+. .+.+.+++.+||+|+++||+++.+.... +.+.++++. ...
T Consensus 1 ~~~i~~~sDlH~~~~~~--------~~~~~-~~~~~~~~~~~d~vl~~GD~~~~~~~~~--------~~~~~~l~~l~~~ 63 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS--------RERLE-RLVEKINALKPDLVVLTGDLVDGSVDVL--------ELLLELLKKLKAP 63 (223)
T ss_pred CCEEEEEeecCCCccCC--------HHHHH-HHHHHHhccCCCEEEEcCcccCCcchhh--------HHHHHHHhccCCC
Confidence 47999999999953221 11122 2344556779999999999999765321 122222221 235
Q ss_pred CcEEEecCCCCCCCC
Q 016783 131 VPFHVLLGDRDVGEC 145 (383)
Q Consensus 131 ~p~~~v~GNHD~~~~ 145 (383)
+|+++++||||....
T Consensus 64 ~~v~~v~GNHD~~~~ 78 (223)
T cd07385 64 LGVYAVLGNHDYYSG 78 (223)
T ss_pred CCEEEECCCcccccC
Confidence 799999999998643
No 35
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.44 E-value=1e-11 Score=116.35 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=58.8
Q ss_pred CCCceEEEEEecCCCCCCC-CCccc---c---cchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHH
Q 016783 49 SGVDLKVMMVANLLLVGSD-SGFVD---R---HFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRF 121 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~-~~~~~---~---~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~ 121 (383)
+.++|||+++||+|++-.. ....+ . .-+|-....-+.+++..++||+|+|+||++++... .++..-+
T Consensus 50 ~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t------~Da~~sl 123 (379)
T KOG1432|consen 50 EDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST------QDAATSL 123 (379)
T ss_pred CCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc------HhHHHHH
Confidence 5679999999999997431 11111 1 01122223445667889999999999999987332 1223345
Q ss_pred HHhhcC--CCCCcEEEecCCCCCC
Q 016783 122 HQMLGT--FLGVPFHVLLGDRDVG 143 (383)
Q Consensus 122 ~~i~~~--~~~~p~~~v~GNHD~~ 143 (383)
.+.+++ ..+||..++.||||-.
T Consensus 124 ~kAvaP~I~~~IPwA~~lGNHDde 147 (379)
T KOG1432|consen 124 MKAVAPAIDRKIPWAAVLGNHDDE 147 (379)
T ss_pred HHHhhhHhhcCCCeEEEecccccc
Confidence 555553 5689999999999974
No 36
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.43 E-value=2.1e-12 Score=119.99 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=62.3
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHH--hhCCCCEEEEcCCCCCCC--CCCChhcHHHHHHHHHHhhcCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSF--HTLNPDMLLVLGDVSAKG--SELTRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~PD~vi~~GDl~d~~--~~~~~~~~~~~~~~~~~i~~~~ 128 (383)
+|++++||+|++.... ...+.+.+.+ ...+||.|+++||++|.. .........+..+.+.++-+
T Consensus 1 M~i~~iSDlHl~~~~~----------~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~-- 68 (241)
T PRK05340 1 MPTLFISDLHLSPERP----------AITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSD-- 68 (241)
T ss_pred CcEEEEeecCCCCCCh----------hHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHH--
Confidence 5899999999954321 0112233333 246899999999999841 11111112233333333322
Q ss_pred CCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEec
Q 016783 129 LGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSLN 182 (383)
Q Consensus 129 ~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Ld 182 (383)
.++|+++|+||||.... ..|.+..|.........++++|.+++..-
T Consensus 69 ~g~~v~~v~GNHD~~~~--------~~~~~~~g~~~l~~~~~~~~~g~~i~l~H 114 (241)
T PRK05340 69 SGVPCYFMHGNRDFLLG--------KRFAKAAGMTLLPDPSVIDLYGQRVLLLH 114 (241)
T ss_pred cCCeEEEEeCCCchhhh--------HHHHHhCCCEEeCCcEEEEECCEEEEEEC
Confidence 35899999999997421 23444444221112245777888877753
No 37
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.43 E-value=1.3e-11 Score=122.07 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=54.4
Q ss_pred CceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHH-------
Q 016783 51 VDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQ------- 123 (383)
Q Consensus 51 ~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~------- 123 (383)
+.+||+|+||+|++........+......+.+ +...+...+||+|+++|||+|...++. +......+.|++
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~e-il~~a~~~~vD~VLiaGDLFd~~~Ps~-~~~~~~~~~lr~~~~g~~p 79 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEE-VLQIAKEQDVDMILLGGDLFHENKPSR-KSLYQVLRSLRLYCLGDKP 79 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHH-HHHHHHHcCCCEEEECCccCCCCCCCH-HHHHHHHHHHHHhhccCCc
Confidence 57999999999995322111001011111222 233345789999999999999887643 222222333332
Q ss_pred ----hhc------------C--------CCCCcEEEecCCCCCCC
Q 016783 124 ----MLG------------T--------FLGVPFHVLLGDRDVGE 144 (383)
Q Consensus 124 ----i~~------------~--------~~~~p~~~v~GNHD~~~ 144 (383)
+++ . ..++|++++.||||...
T Consensus 80 ~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 80 CELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred cchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 111 0 13689999999999854
No 38
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.42 E-value=5.1e-11 Score=106.48 Aligned_cols=214 Identities=18% Similarity=0.182 Sum_probs=120.9
Q ss_pred CceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCC--CCCCCCChhcHHHHHHHHHHhhcCC
Q 016783 51 VDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVS--AKGSELTRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 51 ~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~--d~~~~~~~~~~~~~~~~~~~i~~~~ 128 (383)
..+|++++||+|-.-. ..+.+..+....++|++++.|||+ +-+... .-.+.. .+..+. .
T Consensus 2 ~~mkil~vtDlHg~~~-------------~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~---~~~~~~-~~e~l~--~ 62 (226)
T COG2129 2 KKMKILAVTDLHGSED-------------SLKKLLNAAADIRADLLVIAGDLTYFHFGPKE---VAEELN-KLEALK--E 62 (226)
T ss_pred CcceEEEEeccccchH-------------HHHHHHHHHhhccCCEEEEecceehhhcCchH---HHHhhh-HHHHHH--h
Confidence 3689999999998421 112233444556899999999999 655431 111110 022222 2
Q ss_pred CCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhHHH
Q 016783 129 LGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDL 208 (383)
Q Consensus 129 ~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l 208 (383)
.++|+++||||=|... ......+ .+-.- ...+.+++++.|+++--.....-.. .+...|..+...-
T Consensus 63 ~~~~v~avpGNcD~~~-------v~~~l~~-~~~~v--~~~v~~i~~~~~~G~Ggsn~tp~nt-~~e~~E~~I~s~l--- 128 (226)
T COG2129 63 LGIPVLAVPGNCDPPE-------VIDVLKN-AGVNV--HGRVVEIGGYGFVGFGGSNPTPFNT-PREFSEDEIYSKL--- 128 (226)
T ss_pred cCCeEEEEcCCCChHH-------HHHHHHh-ccccc--ccceEEecCcEEEEecccCCCCCCC-ccccCHHHHHHHH---
Confidence 3789999999988642 1222222 33211 2278999999999954332221111 1223333343221
Q ss_pred HHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHH
Q 016783 209 RMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIF 288 (383)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll 288 (383)
.|..+.. .+..+|+++|.|.+..... .+ .| +..+.....++++
T Consensus 129 -----------------~~~v~~~-~~~~~Il~~HaPP~gt~~d--~~-------------~g----~~hvGS~~vr~~i 171 (226)
T COG2129 129 -----------------KSLVKKA-DNPVNILLTHAPPYGTLLD--TP-------------SG----YVHVGSKAVRKLI 171 (226)
T ss_pred -----------------HHHHhcc-cCcceEEEecCCCCCcccc--CC-------------CC----ccccchHHHHHHH
Confidence 1111111 1222299999999976431 00 01 1122345678999
Q ss_pred HHcCCceEEeccCCCCceeecCCCceEEEecceeccCCCCCcEEEEEEeCC
Q 016783 289 QALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKARDDPGFVIANFHGN 339 (383)
Q Consensus 289 ~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g~~pgy~ll~i~~~ 339 (383)
++++|.+.+|||+|.+....--+++..++-++.+ ...|++++++..
T Consensus 172 eefqP~l~i~GHIHEs~G~d~iG~TivVNPG~~~-----~g~yA~i~l~~~ 217 (226)
T COG2129 172 EEFQPLLGLHGHIHESRGIDKIGNTIVVNPGPLG-----EGRYALIELEKE 217 (226)
T ss_pred HHhCCceEEEeeecccccccccCCeEEECCCCcc-----CceEEEEEecCc
Confidence 9999999999999987644332334444444532 356999998765
No 39
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.40 E-value=2.8e-11 Score=105.03 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=40.6
Q ss_pred HHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC-CCCcEEEEEEeCCC
Q 016783 285 EYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR-DDPGFVIANFHGNG 340 (383)
Q Consensus 285 ~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g-~~pgy~ll~i~~~~ 340 (383)
..+.+..++++|++||+|....... +++..++.+|++.... ..|+|.+++++++.
T Consensus 99 ~~~~~~~~~d~vi~GHtH~~~~~~~-~~~~~iNpGs~~~~~~~~~~~~~il~~~~~~ 154 (158)
T TIGR00040 99 EYLAKELGVDVLIFGHTHIPVAEEL-RGILLINPGSLTGPRNGNTPSYAILDVDKDK 154 (158)
T ss_pred HHHHhccCCCEEEECCCCCCccEEE-CCEEEEECCccccccCCCCCeEEEEEecCCe
Confidence 3444556789999999999876555 4688888888764333 36899999987654
No 40
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.40 E-value=6.2e-11 Score=104.94 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=49.2
Q ss_pred HHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccC----C-CCCcEEEEEEeCCCceEEEeEeecccc
Q 016783 285 EYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKA----R-DDPGFVIANFHGNGRGVSVSYCSLARE 353 (383)
Q Consensus 285 ~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~----g-~~pgy~ll~i~~~~~~~~~~~c~lp~~ 353 (383)
..+.++.+++++++||+|....... +++..++.+|++... + +.|+|+++++++++ +..+.+-|+.+
T Consensus 99 ~~~~~~~~~dvii~GHTH~p~~~~~-~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~--~~~~~~~l~~~ 169 (178)
T cd07394 99 AALQRQLDVDILISGHTHKFEAFEH-EGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSK--VVTYVYQLIDG 169 (178)
T ss_pred HHHHHhcCCCEEEECCCCcceEEEE-CCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCe--EEEEEEEEECC
Confidence 3455567889999999999875554 478999999987432 1 24799999987765 77777777654
No 41
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.36 E-value=6e-11 Score=116.52 Aligned_cols=139 Identities=14% Similarity=0.069 Sum_probs=78.7
Q ss_pred CceEE-ECCE--EEEEecccccccC----CCccccchHHHHhHhhHHHHHhhccccccccccccchhhhhccCCCCCC-E
Q 016783 168 CGAFE-ISNI--SFLSLNAVALLCG----NNKLRFSVEKVIETESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGP-V 239 (383)
Q Consensus 168 ~~~~~-~~~v--~fi~Lds~~~~~~----~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-I 239 (383)
+|+|+ .+++ +||+|||....++ ..+....+++|+.|++.+|.. ...+.+. |
T Consensus 294 yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~---------------------a~a~~p~VV 352 (492)
T TIGR03768 294 CYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELAR---------------------GQADGQLMI 352 (492)
T ss_pred eeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHh---------------------CcCCCceEE
Confidence 78999 5766 9999999986543 223345677888888766541 1224444 5
Q ss_pred EEeeccCccCCCCCC-CCCc-CCcccccCCCCCCCccccccCChHHHHHHHHHc-CCceEEeccCCCCceeec-------
Q 016783 240 LLLHFPLHRTMESQC-GSQI-SNTREKRRFSEPGPYGLLHAVPLNATEYIFQAL-KPKIIFSAHAHEFCDYTH------- 309 (383)
Q Consensus 240 l~~H~Pl~~~~~~~c-~~~~-~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~~~-~v~lvfsGH~H~~~~~~~------- 309 (383)
+++|+|+........ .+.. +.... . ...+..+...+..+|+++ +|.++||||.|.....-+
T Consensus 353 V~hHpPi~t~gi~~md~w~~~~~~~~-------~--~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~v~a~~~p~~~~ 423 (492)
T TIGR03768 353 IAAHIPIAVSPIGSEMEWWLGAADAN-------P--DLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNTVKAFPSPDPAR 423 (492)
T ss_pred EEeCCCcccCCccchhhhcccccccc-------c--cccccccHHHHHHHHhcCCCeEEEEcCCcccccccccCCCCCCC
Confidence 667777664111000 1100 00000 0 112223334677888887 688899999998754332
Q ss_pred -CCCceEEEecceeccCCCCCcEEEEEEeCC
Q 016783 310 -SDGTREVTVSAMTWKARDDPGFVIANFHGN 339 (383)
Q Consensus 310 -~~~~~eitv~S~s~~~g~~pgy~ll~i~~~ 339 (383)
+.|.-|+.+.|.- . -..=|++++|..+
T Consensus 424 pe~gFWeveTaSl~--D-fPQq~R~~Ei~~n 451 (492)
T TIGR03768 424 PEYGFWQVETASLR--D-FPQQFRTFEIYLN 451 (492)
T ss_pred CcCceEEEeehhhc--c-chhhceEEEEEeC
Confidence 1356677766652 1 0125788887643
No 42
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.34 E-value=3.3e-11 Score=101.78 Aligned_cols=62 Identities=16% Similarity=0.290 Sum_probs=40.3
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcE
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPF 133 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~ 133 (383)
||+++||+|..-. .++..+||+|+++||+++.+.. +++.. +.+.+......++
T Consensus 1 ~i~~isD~H~~~~--------------------~~~~~~~D~vi~~GD~~~~~~~---~~~~~----~~~~l~~~~~~~~ 53 (135)
T cd07379 1 RFVCISDTHSRHR--------------------TISIPDGDVLIHAGDLTERGTL---EELQK----FLDWLKSLPHPHK 53 (135)
T ss_pred CEEEEeCCCCCCC--------------------cCcCCCCCEEEECCCCCCCCCH---HHHHH----HHHHHHhCCCCeE
Confidence 5899999997321 1234689999999999986642 33333 3333332222236
Q ss_pred EEecCCCCC
Q 016783 134 HVLLGDRDV 142 (383)
Q Consensus 134 ~~v~GNHD~ 142 (383)
++|+||||.
T Consensus 54 ~~v~GNHD~ 62 (135)
T cd07379 54 IVIAGNHDL 62 (135)
T ss_pred EEEECCCCC
Confidence 789999996
No 43
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=117.19 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=52.4
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCC
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~ 128 (383)
+..+++|+++||+|..... + .. ..+...+....||+|+++||+++.. .++......+.+.++.+
T Consensus 41 ~~~~~~iv~lSDlH~~~~~---------~-~~-~~~~~~i~~~~~DlivltGD~~~~~---~~~~~~~~~~~L~~L~~-- 104 (284)
T COG1408 41 SLQGLKIVQLSDLHSLPFR---------E-EK-LALLIAIANELPDLIVLTGDYVDGD---RPPGVAALALFLAKLKA-- 104 (284)
T ss_pred ccCCeEEEEeehhhhchhh---------H-HH-HHHHHHHHhcCCCEEEEEeeeecCC---CCCCHHHHHHHHHhhhc--
Confidence 5678999999999995321 1 11 1233345566789999999999961 12233333444444433
Q ss_pred CCCcEEEecCCCCCCCC
Q 016783 129 LGVPFHVLLGDRDVGEC 145 (383)
Q Consensus 129 ~~~p~~~v~GNHD~~~~ 145 (383)
..++++|.||||++..
T Consensus 105 -~~gv~av~GNHd~~~~ 120 (284)
T COG1408 105 -PLGVFAVLGNHDYGVD 120 (284)
T ss_pred -cCCEEEEecccccccc
Confidence 4689999999999654
No 44
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.28 E-value=2.7e-10 Score=105.17 Aligned_cols=41 Identities=7% Similarity=0.084 Sum_probs=29.2
Q ss_pred hHHHHHHHHHcCCceEEeccCCCCceeecC-C--CceEEEecce
Q 016783 281 LNATEYIFQALKPKIIFSAHAHEFCDYTHS-D--GTREVTVSAM 321 (383)
Q Consensus 281 ~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~-~--~~~eitv~S~ 321 (383)
++...++++..+++++++||+|.......+ + +...++.+.-
T Consensus 174 ~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW 217 (231)
T TIGR01854 174 PAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDW 217 (231)
T ss_pred HHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCC
Confidence 445677788889999999999999855432 1 3456666653
No 45
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.27 E-value=2e-10 Score=99.14 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=40.6
Q ss_pred HHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC-CCCcEEEEEEeC
Q 016783 286 YIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR-DDPGFVIANFHG 338 (383)
Q Consensus 286 ~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g-~~pgy~ll~i~~ 338 (383)
.+++..+++++++||+|....... ++...++.+|++...+ +.++|+++++++
T Consensus 96 ~~~~~~~~d~vi~GHtH~~~~~~~-~~~~~inpGs~~~~~~~~~~~~~i~~~~~ 148 (155)
T cd00841 96 YLAKEGGADVVLYGHTHIPVIEKI-GGVLLLNPGSLSLPRGGGPPTYAILEIDD 148 (155)
T ss_pred hhhhhcCCCEEEECcccCCccEEE-CCEEEEeCCCccCcCCCCCCeEEEEEecC
Confidence 445667899999999999886554 4688888889876543 457999999986
No 46
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.25 E-value=3.1e-10 Score=104.17 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=44.2
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
+||+++||+|..- . . . ..+.++..+||+|+++||++++. .+..+.+.++ ..|
T Consensus 1 ~rIa~isDiHg~~-~----~---~-------~~~~l~~~~pD~Vl~~GDi~~~~--------~~~~~~l~~l-----~~p 52 (238)
T cd07397 1 LRIAIVGDVHGQW-D----L---E-------DIKALHLLQPDLVLFVGDFGNES--------VQLVRAISSL-----PLP 52 (238)
T ss_pred CEEEEEecCCCCc-h----H---H-------HHHHHhccCCCEEEECCCCCcCh--------HHHHHHHHhC-----CCC
Confidence 5899999999621 1 0 0 12346678999999999998642 1223333332 469
Q ss_pred EEEecCCCCCCCC
Q 016783 133 FHVLLGDRDVGEC 145 (383)
Q Consensus 133 ~~~v~GNHD~~~~ 145 (383)
+++|+||||....
T Consensus 53 ~~~V~GNHD~~~~ 65 (238)
T cd07397 53 KAVILGNHDAWYD 65 (238)
T ss_pred eEEEcCCCccccc
Confidence 9999999998653
No 47
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.24 E-value=1.1e-09 Score=97.88 Aligned_cols=215 Identities=17% Similarity=0.226 Sum_probs=103.7
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHH-----------------
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWL----------------- 115 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~----------------- 115 (383)
=||+.+||+|=. ..+...+..++....||+|+++||++.... ..++|.
T Consensus 6 ~kilA~s~~~g~-------------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a--~~~e~~~a~~~~r~p~k~~i~~e 70 (255)
T PF14582_consen 6 RKILAISNFRGD-------------FELLERLVEVIPEKGPDAVVFVGDLLKAEA--RSDEYERAQEEQREPDKSEINEE 70 (255)
T ss_dssp -EEEEEE--TT--------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCH--HHHHHHHHHHTT----THHHHHH
T ss_pred hhheeecCcchH-------------HHHHHHHHhhccccCCCEEEEeccccccch--hhhHHHHHhhhccCcchhhhhhh
Confidence 379999998751 112233556677779999999999987542 233444
Q ss_pred -----HHHHHHHHhhcCCCCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCCC--CCCceEEECC-EEEEEecccccc
Q 016783 116 -----PVLDRFHQMLGTFLGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDS--SGCGAFEISN-ISFLSLNAVALL 187 (383)
Q Consensus 116 -----~~~~~~~~i~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~--~~~~~~~~~~-v~fi~Lds~~~~ 187 (383)
+.+..|.+++.. .++|+++||||||-+.. ....+.|+...-.++. .-...+.++| +-+++......+
T Consensus 71 ~~~~~e~~~~ff~~L~~-~~~p~~~vPG~~Dap~~----~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~GGeI~~ 145 (255)
T PF14582_consen 71 ECYDSEALDKFFRILGE-LGVPVFVVPGNMDAPER----FFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGMGGEITD 145 (255)
T ss_dssp HHHHHHHHHHHHHHHHC-C-SEEEEE--TTS-SHH----HHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE-SEEES
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEecCCCCchHH----HHHHHHhccceeccceeeeeeeecccCCcEEEEecCccccC
Confidence 123345555543 48999999999997421 1112333321111110 0012345554 888887655433
Q ss_pred cCCC---ccccchHHHHhHhhHHHHHhhccccccccccccchhhhhccCCCCCCEEEeeccC-ccCCCCCCCCCcCCccc
Q 016783 188 CGNN---KLRFSVEKVIETESIDLRMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPL-HRTMESQCGSQISNTRE 263 (383)
Q Consensus 188 ~~~~---~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl-~~~~~~~c~~~~~~~~~ 263 (383)
.... .+....| . .++.- ++-| . ..+.+.|++.|.|. ..... .
T Consensus 146 ~~~~~~~~LrYP~w-----e-aey~l-------------k~l~---e-lk~~r~IlLfhtpPd~~kg~-------~---- 191 (255)
T PF14582_consen 146 DQREEEFKLRYPAW-----E-AEYSL-------------KFLR---E-LKDYRKILLFHTPPDLHKGL-------I---- 191 (255)
T ss_dssp SS-BCSSS-EEEHH-----H-HHHHH-------------GGGG---G-CTSSEEEEEESS-BTBCTCT-------B----
T ss_pred CCccccccccchHH-----H-HHHHH-------------HHHH---h-cccccEEEEEecCCccCCCc-------c----
Confidence 2211 1111111 1 11110 1111 1 12335599999998 21100 0
Q ss_pred ccCCCCCCCccccccCChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCCCCCcEEEEEEeCCC
Q 016783 264 KRRFSEPGPYGLLHAVPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKARDDPGFVIANFHGNG 340 (383)
Q Consensus 264 ~~~~~~~g~y~~~~~l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g~~pgy~ll~i~~~~ 340 (383)
.. ..+....++++++|++++|||.|.......-+.+.-++-+|++. | +|+++.+..++
T Consensus 192 -----h~---------GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL~~--G---~yAvI~l~~~~ 249 (255)
T PF14582_consen 192 -----HV---------GSAAVRDLIKTYNPDIVLCGHIHESHGKESLGKTLVVNPGSLAE--G---DYAVIDLEQDK 249 (255)
T ss_dssp -----TT---------SBHHHHHHHHHH--SEEEE-SSS-EE--EEETTEEEEE--BGGG--T---EEEEEETTTTE
T ss_pred -----cc---------cHHHHHHHHHhcCCcEEEecccccchhhHHhCCEEEecCccccc--C---ceeEEEecccc
Confidence 01 23467899999999999999999976333323455556667764 2 79999987765
No 48
>PRK09453 phosphodiesterase; Provisional
Probab=99.21 E-value=7e-10 Score=98.57 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=34.8
Q ss_pred cCCceEEeccCCCCceeecCCCceEEEecceeccCC-CCCcEEEEEE
Q 016783 291 LKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR-DDPGFVIANF 336 (383)
Q Consensus 291 ~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g-~~pgy~ll~i 336 (383)
.+.+++++||+|....... ++...++.+|.+.+.| ..+.|+++++
T Consensus 117 ~~~d~vi~GHtH~p~~~~~-~~~~~iNpGs~~~p~~~~~~s~~il~~ 162 (182)
T PRK09453 117 HDGDVLVYGHTHIPVAEKQ-GGIILFNPGSVSLPKGGYPASYGILDD 162 (182)
T ss_pred cCCCEEEECCCCCCcceEE-CCEEEEECCCccccCCCCCCeEEEEEC
Confidence 3578999999999876555 4788899999875444 3569999886
No 49
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.18 E-value=2.4e-11 Score=109.67 Aligned_cols=206 Identities=13% Similarity=0.086 Sum_probs=106.4
Q ss_pred EEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCC--CEEEEcCCCCCCCCCCChhcHHHH----HHHHHHhhcCCC
Q 016783 56 MMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNP--DMLLVLGDVSAKGSELTRSDWLPV----LDRFHQMLGTFL 129 (383)
Q Consensus 56 ~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~P--D~vi~~GDl~d~~~~~~~~~~~~~----~~~~~~i~~~~~ 129 (383)
++|||+||+...+ .+...|...+....+ |.++++||++|. |..+.+|.+. .+.+.++- ..
T Consensus 1 lFISDlHL~~~~p----------~~t~~fl~Fl~~~a~~ad~lyilGDifd~--w~g~~~~~~~~~~V~~~l~~~a--~~ 66 (237)
T COG2908 1 LFISDLHLGPKRP----------ALTAFFLDFLREEAAQADALYILGDIFDG--WIGDDEPPQLHRQVAQKLLRLA--RK 66 (237)
T ss_pred CeeeccccCCCCc----------HHHHHHHHHHHhccccCcEEEEechhhhh--hhcCCcccHHHHHHHHHHHHHH--hc
Confidence 4799999963332 133345556666666 999999999983 2233333333 33333332 34
Q ss_pred CCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCC-CCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhHHH
Q 016783 130 GVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLD-SSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDL 208 (383)
Q Consensus 130 ~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~-~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l 208 (383)
++++|+++||||.- ..++|...+|... .+.+-.++..|-.++++ .||. +|..+ .++.+....
T Consensus 67 G~~v~~i~GN~Dfl--------l~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~-----HGD~--f~t~~-~~y~~~r~~- 129 (237)
T COG2908 67 GTRVYYIHGNHDFL--------LGKRFAQEAGGMTLLPDPIVLDLYGKRILLA-----HGDT--FCTDD-RAYQWFRYK- 129 (237)
T ss_pred CCeEEEecCchHHH--------HHHHHHhhcCceEEcCcceeeeecCcEEEEE-----eCCc--ccchH-HHHHHHHHH-
Confidence 79999999999973 2467888777211 11123556666666664 3332 22211 122221100
Q ss_pred HHhhccccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCc--ccccCCCCCCCccccccCChHHHHH
Q 016783 209 RMEAKGSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNT--REKRRFSEPGPYGLLHAVPLNATEY 286 (383)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~--~~~~~~~~~g~y~~~~~l~~e~~~~ 286 (383)
....-...+|.+.|+...-. .....+..+ .+. ..++.++.. -.+++...+
T Consensus 130 -----------------------~~~~~~~~lflnl~l~~R~r-i~~k~r~~s~~~k~---~~~~~~~i~-d~~~~~v~~ 181 (237)
T COG2908 130 -----------------------VHWAWLQLLFLNLPLRVRRR-IAYKIRSLSSWAKK---KVKKAVNIM-DVNPAAVAD 181 (237)
T ss_pred -----------------------cccHHHHHHHHHhHHHHHHH-HHHHHHHhhHHhHH---hhhhHHHHH-HhhHHHHHH
Confidence 00000113455555541100 000000000 000 000111111 124556777
Q ss_pred HHHHcCCceEEeccCCCCceeecCCCceEEEecce
Q 016783 287 IFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAM 321 (383)
Q Consensus 287 ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~ 321 (383)
.++..+++.+.+||+|....... ++...++.++.
T Consensus 182 ~~~~~~vd~vI~GH~Hr~ai~~i-~~~~yi~lGdW 215 (237)
T COG2908 182 EARRHGVDGVIHGHTHRPAIHNI-PGITYINLGDW 215 (237)
T ss_pred HHHHcCCCEEEecCcccHhhccC-CCceEEecCcc
Confidence 88889999999999999875443 35777888865
No 50
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.12 E-value=6.4e-11 Score=107.84 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=59.3
Q ss_pred EEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCC---CChhcHHHHHHHHHHhhcCCCCCc
Q 016783 56 MMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSE---LTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 56 ~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~---~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
++|||+|++..... .+... ..+.......+||.++++||++|.-.. .....+.+....+.+.+. .+++
T Consensus 1 ~~iSDlHlg~~~~~------~~~~~-~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 71 (217)
T cd07398 1 LFISDLHLGDGGPA------ADFLL-LFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLAD--RGTR 71 (217)
T ss_pred CEeeeecCCCCCCC------HHHHH-HHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHH--CCCe
Confidence 47999999654321 01111 111111113589999999999984211 111222222233444333 3689
Q ss_pred EEEecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCc-eEEECCEEEEEeccccc
Q 016783 133 FHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCG-AFEISNISFLSLNAVAL 186 (383)
Q Consensus 133 ~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~-~~~~~~v~fi~Lds~~~ 186 (383)
+++|+||||.... ..+....+........ .++++|.++++.-...+
T Consensus 72 v~~v~GNHD~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~HG~~~ 118 (217)
T cd07398 72 VYYVPGNHDFLLG--------DFFAEELGLILLPDPLVHLELDGKRILLEHGDQF 118 (217)
T ss_pred EEEECCCchHHHH--------hHHHHHcCCEEeccceEEEeeCCeEEEEECCCcC
Confidence 9999999998432 1122222211111123 57788888888654443
No 51
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.10 E-value=7.3e-10 Score=91.12 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=43.5
Q ss_pred EEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEE
Q 016783 56 MMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHV 135 (383)
Q Consensus 56 ~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~ 135 (383)
+++||+|...... .. .. ........+||.||++||+++.+.......+.. +.... ..+.|+++
T Consensus 1 ~~~gD~h~~~~~~---~~-----~~---~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~ 63 (131)
T cd00838 1 AVISDIHGNLEAL---EA-----VL---EAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAA----LALLL--LLGIPVYV 63 (131)
T ss_pred CeeecccCCccch---HH-----HH---HHHHhcccCCCEEEECCcccCCCCCchHHHHHH----HHHhh--cCCCCEEE
Confidence 4789999964321 00 00 023456789999999999999876532222111 12221 34689999
Q ss_pred ecCCCC
Q 016783 136 LLGDRD 141 (383)
Q Consensus 136 v~GNHD 141 (383)
++||||
T Consensus 64 ~~GNHD 69 (131)
T cd00838 64 VPGNHD 69 (131)
T ss_pred eCCCce
Confidence 999999
No 52
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.07 E-value=9.7e-09 Score=105.02 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=67.1
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh---------hCCCCEEEEcCCCCCCCC-CCCh-h-----
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH---------TLNPDMLLVLGDVSAKGS-ELTR-S----- 112 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~PD~vi~~GDl~d~~~-~~~~-~----- 112 (383)
..+..+++++||+|++.... .+.. .+.|.+.++ ..+||.+|++||+++... .... +
T Consensus 240 ~~~~~~i~~ISDlHlgs~~~-------~~~~-l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~ 311 (504)
T PRK04036 240 KDEKVYAVFISDVHVGSKEF-------LEDA-FEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIV 311 (504)
T ss_pred CCCccEEEEEcccCCCCcch-------hHHH-HHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccch
Confidence 34578999999999965321 0111 112333344 568999999999998521 1110 0
Q ss_pred cHHHHHHHHHHhhcC-CCCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCC---CCCCceEEECCEEEEEe
Q 016783 113 DWLPVLDRFHQMLGT-FLGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLD---SSGCGAFEISNISFLSL 181 (383)
Q Consensus 113 ~~~~~~~~~~~i~~~-~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~---~~~~~~~~~~~v~fi~L 181 (383)
...+.++.+.+++.. ..++|++++|||||........+...+.|.+.|...+ ......++++|.++++.
T Consensus 312 ~~~~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~ 384 (504)
T PRK04036 312 DIYEQYEAAAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIY 384 (504)
T ss_pred hhHHHHHHHHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCCeEEecCCeEEEECCEEEEEE
Confidence 111112334444432 2368999999999974322111111233444443211 11123577788887764
No 53
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.06 E-value=4.4e-10 Score=111.73 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=53.5
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcC--CCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGT--FLG 130 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~--~~~ 130 (383)
+||+|+||+||+....+...+..........+.+.+...++|+||++|||||...+.... ..++.+.|.. ..+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a-----~~~~~~~l~~l~~~~ 75 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRA-----LKLFLEALRRLKDAG 75 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHH-----HHHHHHHHHHhccCC
Confidence 689999999996332211222111111112223345678999999999999987654322 2233333331 247
Q ss_pred CcEEEecCCCCCCC
Q 016783 131 VPFHVLLGDRDVGE 144 (383)
Q Consensus 131 ~p~~~v~GNHD~~~ 144 (383)
+|+++++||||...
T Consensus 76 Ipv~~I~GNHD~~~ 89 (390)
T COG0420 76 IPVVVIAGNHDSPS 89 (390)
T ss_pred CcEEEecCCCCchh
Confidence 99999999999843
No 54
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=9.6e-10 Score=102.82 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=51.0
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
+||+++||+|++....+ ..+........+.+...+...+||+|+++||++|...... ... ..+.++.+.+....++|
T Consensus 1 mkilh~SD~Hlg~~~~~-~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~-~~~-~~~~~~l~~l~~~~~i~ 77 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEG-VSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPA-EAQ-ELFNAFFRNLSDANPIP 77 (253)
T ss_pred CEEEEEhhhcCCCccCC-CChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCH-HHH-HHHHHHHHHHHhcCCce
Confidence 68999999999643211 1111111111222334456779999999999999765422 111 11222222222222389
Q ss_pred EEEecCCCCCC
Q 016783 133 FHVLLGDRDVG 143 (383)
Q Consensus 133 ~~~v~GNHD~~ 143 (383)
+++++||||..
T Consensus 78 v~~i~GNHD~~ 88 (253)
T TIGR00619 78 IVVISGNHDSA 88 (253)
T ss_pred EEEEccCCCCh
Confidence 99999999984
No 55
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.02 E-value=1.3e-08 Score=94.64 Aligned_cols=118 Identities=11% Similarity=0.072 Sum_probs=61.8
Q ss_pred EEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhC-----CCCEEEEcCCCCCCCCC--CCh-----hcHHHHHHHHHH
Q 016783 56 MMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTL-----NPDMLLVLGDVSAKGSE--LTR-----SDWLPVLDRFHQ 123 (383)
Q Consensus 56 ~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~PD~vi~~GDl~d~~~~--~~~-----~~~~~~~~~~~~ 123 (383)
+++||+|++.... .. ...+.+.+.++.. +||.||++||++|.... ... +...+.++.+.+
T Consensus 2 ~~iSDlHl~~~~~-------~~-~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (243)
T cd07386 2 VFISDVHVGSKTF-------LE-DAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAE 73 (243)
T ss_pred EEecccCCCchhh-------hH-HHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHH
Confidence 7899999965321 01 1112344444443 56999999999986321 001 111222344555
Q ss_pred hhcC-CCCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCC---CCCCceEEECCEEEEEe
Q 016783 124 MLGT-FLGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLD---SSGCGAFEISNISFLSL 181 (383)
Q Consensus 124 i~~~-~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~---~~~~~~~~~~~v~fi~L 181 (383)
+++. ..++|++++|||||............+.+.+.+...+ ....+.+.++|.+|++.
T Consensus 74 ~l~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~ 135 (243)
T cd07386 74 YLSDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIY 135 (243)
T ss_pred HHHhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEE
Confidence 5543 2368999999999985322111111233333331110 11124577788877653
No 56
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.00 E-value=8.2e-09 Score=88.62 Aligned_cols=188 Identities=18% Similarity=0.249 Sum_probs=102.7
Q ss_pred eEEEEEecCCCCCCCC--------CcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHh
Q 016783 53 LKVMMVANLLLVGSDS--------GFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQM 124 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i 124 (383)
++|-.+||+||.-... .|.. -.+.+.+.++..+. .-|+|++.||+.-.-+- ++ ..+.|+=+
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~g---h~ekI~k~W~~~v~--~eDiVllpGDiSWaM~l---~e---a~~Dl~~i 69 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSG---HHEKIKKHWRSKVS--PEDIVLLPGDISWAMRL---EE---AEEDLRFI 69 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccC---chHHHHHHHHhcCC--hhhEEEecccchhheec---hh---hhhhhhhh
Confidence 4788999999963322 1221 12234455555443 23899999999743221 11 11222211
Q ss_pred hcCCCCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCCCCCCceEEECCEEEEEe---cccccccCCCccccchHHHH
Q 016783 125 LGTFLGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDSSGCGAFEISNISFLSL---NAVALLCGNNKLRFSVEKVI 201 (383)
Q Consensus 125 ~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~L---ds~~~~~~~~~~~~~~~~~l 201 (383)
... .-..+.+-||||+... +..+..+.+.+.-+..+.-|.++++.+++. +|... +...+...+++-+
T Consensus 70 -~~L-PG~K~m~rGNHDYWw~------s~skl~n~lp~~l~~~n~~f~l~n~aI~G~RgW~s~~~--~~e~~te~Deki~ 139 (230)
T COG1768 70 -GDL-PGTKYMIRGNHDYWWS------SISKLNNALPPILFYLNNGFELLNYAIVGVRGWDSPSF--DSEPLTEQDEKIF 139 (230)
T ss_pred -hcC-CCcEEEEecCCccccc------hHHHHHhhcCchHhhhccceeEeeEEEEEeecccCCCC--CcCccchhHHHHH
Confidence 111 2257999999999764 245566666554333445677777666654 22221 1111222334433
Q ss_pred hHhhHHHHHhhccccccccccccchhhhhccCC-CCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCC
Q 016783 202 ETESIDLRMEAKGSAEAVHDFSNFAWREKAMSS-KSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVP 280 (383)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~ 280 (383)
.++..+|..++ .++.++ .+.-||.+|+|.+..+.+ .|
T Consensus 140 ~RE~~RLrlsa----------------~a~l~k~~~~fivM~HYPP~s~~~t-----------------~~--------- 177 (230)
T COG1768 140 LREIGRLRLSA----------------DAALPKGVSKFIVMTHYPPFSDDGT-----------------PG--------- 177 (230)
T ss_pred HHHHHHHHHHH----------------HHhcccCcCeEEEEEecCCCCCCCC-----------------Cc---------
Confidence 33333332111 111222 333488889999886541 12
Q ss_pred hHHHHHHHHHcCCceEEeccCCCCc
Q 016783 281 LNATEYIFQALKPKIIFSAHAHEFC 305 (383)
Q Consensus 281 ~e~~~~ll~~~~v~lvfsGH~H~~~ 305 (383)
...++|++.+|+.++-||.|--.
T Consensus 178 --~~sevlee~rv~~~lyGHlHgv~ 200 (230)
T COG1768 178 --PFSEVLEEGRVSKCLYGHLHGVP 200 (230)
T ss_pred --chHHHHhhcceeeEEeeeccCCC
Confidence 25678889999999999999865
No 57
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.00 E-value=1.2e-09 Score=108.75 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=52.5
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
+||+|+||+|++....+ ..+........+.+...++..+||+|+++||++|.+.+.. .....+.+|.+.+.. .++|
T Consensus 1 mkilh~SDlHlG~~~~~-~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~--~a~~~~~~~l~~L~~-~~~~ 76 (407)
T PRK10966 1 MRILHTSDWHLGQNFYS-KSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPS--YARELYNRFVVNLQQ-TGCQ 76 (407)
T ss_pred CEEEEEcccCCCCcccC-cccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcH--HHHHHHHHHHHHHHh-cCCc
Confidence 68999999999532211 1111111122233455567889999999999999765321 111222333333332 3689
Q ss_pred EEEecCCCCCC
Q 016783 133 FHVLLGDRDVG 143 (383)
Q Consensus 133 ~~~v~GNHD~~ 143 (383)
+++|+||||..
T Consensus 77 v~~I~GNHD~~ 87 (407)
T PRK10966 77 LVVLAGNHDSV 87 (407)
T ss_pred EEEEcCCCCCh
Confidence 99999999974
No 58
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.92 E-value=1.1e-07 Score=83.26 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCCCCC-cEEEEEEeCCC
Q 016783 284 TEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKARDDP-GFVIANFHGNG 340 (383)
Q Consensus 284 ~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g~~p-gy~ll~i~~~~ 340 (383)
...+-+..+.++++.||+|....... +++..++=+|+|-..+..| +|.++++++..
T Consensus 101 l~~la~~~~~Dvli~GHTH~p~~~~~-~~i~~vNPGS~s~pr~~~~~sy~il~~~~~~ 157 (172)
T COG0622 101 LEYLAKELGADVLIFGHTHKPVAEKV-GGILLVNPGSVSGPRGGNPASYAILDVDNLE 157 (172)
T ss_pred HHHHHHhcCCCEEEECCCCcccEEEE-CCEEEEcCCCcCCCCCCCCcEEEEEEcCCCE
Confidence 44555667899999999999986665 4688888889986544455 99999987654
No 59
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.91 E-value=2.4e-08 Score=83.68 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=22.7
Q ss_pred hHHHHHHHHHcCCceEEeccCCCCceee
Q 016783 281 LNATEYIFQALKPKIIFSAHAHEFCDYT 308 (383)
Q Consensus 281 ~e~~~~ll~~~~v~lvfsGH~H~~~~~~ 308 (383)
.+.+.+++++.+++++|+||+|......
T Consensus 80 ~~~l~~~l~~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 80 FEAFLDFIDRFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred HHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence 4566788888899999999999987543
No 60
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.80 E-value=1e-08 Score=90.21 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=50.0
Q ss_pred EEEecCCCCCCCC----CcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 56 MMVANLLLVGSDS----GFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 56 ~~isD~hl~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
+++||+|++.... +........+...+.+.+.+++.+||.||++||++++......+++.. .. +... ...++
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~-~~-~~~~--~~~~~ 76 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEE-VA-FLRL--LAKDV 76 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHH-HH-HHHh--ccCCC
Confidence 5799999964321 110011111223344556677889999999999998765433332222 11 1111 23468
Q ss_pred cEEEecCCCCCC
Q 016783 132 PFHVLLGDRDVG 143 (383)
Q Consensus 132 p~~~v~GNHD~~ 143 (383)
|+++|+||||..
T Consensus 77 ~v~~i~GNHD~~ 88 (172)
T cd07391 77 DVILIRGNHDGG 88 (172)
T ss_pred eEEEEcccCccc
Confidence 999999999975
No 61
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.70 E-value=3.2e-06 Score=79.33 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=43.2
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCC-EEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPD-MLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD-~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
++|++++|.|-..+. ..........+.. +.+.+++.+|| +++.+||+++........+-....+.++.+ +
T Consensus 1 ~~il~~nd~~~~~~~--~~~~~gG~~rl~~-~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l-----~- 71 (257)
T cd07406 1 FTILHFNDVYEIAPL--DGGPVGGAARFAT-LRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL-----G- 71 (257)
T ss_pred CeEEEEccceeeccc--CCCCcCCHHHHHH-HHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc-----C-
Confidence 579999999932211 0011111112222 22334455788 788999999765322111112223333322 2
Q ss_pred cEEEecCCCCCCCC
Q 016783 132 PFHVLLGDRDVGEC 145 (383)
Q Consensus 132 p~~~v~GNHD~~~~ 145 (383)
.-+.++||||+.++
T Consensus 72 ~d~~~~GNHefd~g 85 (257)
T cd07406 72 VDLACFGNHEFDFG 85 (257)
T ss_pred CcEEeecccccccC
Confidence 34778999999653
No 62
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.67 E-value=1.3e-06 Score=88.29 Aligned_cols=214 Identities=18% Similarity=0.139 Sum_probs=111.2
Q ss_pred HHHHHHHHHhhCC-CCEEEEcCCCCCCCCCC-ChhcHHHHHHHHHHhhcC-CCCCcEEEecCCCCCCCCCCCChh-----
Q 016783 80 MAKFFRKSFHTLN-PDMLLVLGDVSAKGSEL-TRSDWLPVLDRFHQMLGT-FLGVPFHVLLGDRDVGECSGLDTG----- 151 (383)
Q Consensus 80 l~~~~~~~~~~~~-PD~vi~~GDl~d~~~~~-~~~~~~~~~~~~~~i~~~-~~~~p~~~v~GNHD~~~~~~~~~~----- 151 (383)
+..++..+.+..+ +|+|+.+||...-..+. +.++-.+.+.++.+.+.. ..++|+|...||||+-..+.+.+.
T Consensus 197 ies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~ 276 (577)
T KOG3770|consen 197 IESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKR 276 (577)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcch
Confidence 3344444444444 89999999997543332 223322333333333331 237999999999998443311110
Q ss_pred -HH----HHHHhhCCC----C-----CCCCCce-EEECCEEEEEecccccccCCCcc--c-cchHHHHhHhhHHHHHhhc
Q 016783 152 -SV----DWIAGNFPG----L-----DSSGCGA-FEISNISFLSLNAVALLCGNNKL--R-FSVEKVIETESIDLRMEAK 213 (383)
Q Consensus 152 -~~----~~f~~~f~~----~-----~~~~~~~-~~~~~v~fi~Lds~~~~~~~~~~--~-~~~~~~l~~~~~~l~~~~~ 213 (383)
.. +.+...+.+ . ..+++|. ...+|.++|.||+..+......+ + .....+++|...+|...
T Consensus 277 ~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~a-- 354 (577)
T KOG3770|consen 277 HSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEA-- 354 (577)
T ss_pred hhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHH--
Confidence 00 112211211 0 0112233 23499999999999765433221 1 22334677765544321
Q ss_pred cccccccccccchhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHHHHcC-
Q 016783 214 GSAEAVHDFSNFAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIFQALK- 292 (383)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~~~~- 292 (383)
...+...=++.|+|.-. ..|.. .| + .....++.++.
T Consensus 355 ------------------e~~GekVhil~HIPpG~---~~c~~------------------~w---s-~~f~~iv~r~~~ 391 (577)
T KOG3770|consen 355 ------------------ESAGEKVHILGHIPPGD---GVCLE------------------GW---S-INFYRIVNRFRS 391 (577)
T ss_pred ------------------HhcCCEEEEEEeeCCCC---cchhh------------------hh---h-HHHHHHHHHHHH
Confidence 12344455889999754 23321 11 1 12345555553
Q ss_pred -CceEEeccCCCCceeecC--CC----ceEEEecceeccCCCCCcEEEEEEeC
Q 016783 293 -PKIIFSAHAHEFCDYTHS--DG----TREVTVSAMTWKARDDPGFVIANFHG 338 (383)
Q Consensus 293 -v~lvfsGH~H~~~~~~~~--~~----~~eitv~S~s~~~g~~pgy~ll~i~~ 338 (383)
+...|.||.|...-.++. .. ...+..||+.-+....|||.+-.+++
T Consensus 392 tI~gqf~GH~h~d~f~v~yde~~~~p~~v~~i~~svtty~~~~p~yr~y~~~~ 444 (577)
T KOG3770|consen 392 TIAGQFYGHTHIDEFRVFYDEETGHPIAVAYIGPSVTTYYNKNPGYRIYAVDS 444 (577)
T ss_pred hhhhhccccCcceeEEEEeccccCCceeeeeccccceehhccCCCceecccCc
Confidence 456899999997633321 11 11133444443444578999888773
No 63
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.63 E-value=7.4e-06 Score=76.34 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=44.2
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCC-EEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPD-MLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD-~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
++|+++||+|- .... . .....-..+.+ +.+.+++.+|| +++.+||+++..............+.++.+ +
T Consensus 1 l~i~~~sD~hg-~~~~-~-~~~~g~~~l~~-~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~-----g- 70 (252)
T cd00845 1 LTILHTNDLHG-HFEP-A-GGVGGAARLAT-LIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNAL-----G- 70 (252)
T ss_pred CEEEEeccccc-Cccc-c-CCcCCHHHHHH-HHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhc-----C-
Confidence 58999999993 2110 0 00001111222 33345556788 668899999876543222222223333322 2
Q ss_pred cEEEecCCCCCCCC
Q 016783 132 PFHVLLGDRDVGEC 145 (383)
Q Consensus 132 p~~~v~GNHD~~~~ 145 (383)
..++++||||+.++
T Consensus 71 ~d~~~~GNHe~d~g 84 (252)
T cd00845 71 YDAVTIGNHEFDYG 84 (252)
T ss_pred CCEEeecccccccc
Confidence 34677899998654
No 64
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.59 E-value=1.2e-07 Score=86.89 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=50.0
Q ss_pred eEEEEEecCCCCCCCC----CcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCC
Q 016783 53 LKVMMVANLLLVGSDS----GFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~ 128 (383)
-+.++|||+|++.... +..-.........+.+.+.+...+||.|+++||+++..... ..+.+..+.++++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~--~~~~~~~~~l~~~---- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG--LEWRFIREFIEVT---- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh--HHHHHHHHHHHhc----
Confidence 3579999999964321 10000011122233344556778999999999999865432 3333322333332
Q ss_pred CCCcEEEecCCCCCC
Q 016783 129 LGVPFHVLLGDRDVG 143 (383)
Q Consensus 129 ~~~p~~~v~GNHD~~ 143 (383)
..++++|+||||..
T Consensus 89 -~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 89 -FRDLILIRGNHDAL 102 (225)
T ss_pred -CCcEEEECCCCCCc
Confidence 35899999999964
No 65
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.58 E-value=1.2e-05 Score=76.10 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=43.4
Q ss_pred eEEEEEecCCCCCCCCCcc----cccchHHHHHHHHHHHHhhCCCCEEEE-cCCCCCCCCCCChh------cHHHHHHHH
Q 016783 53 LKVMMVANLLLVGSDSGFV----DRHFRDYYMAKFFRKSFHTLNPDMLLV-LGDVSAKGSELTRS------DWLPVLDRF 121 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~PD~vi~-~GDl~d~~~~~~~~------~~~~~~~~~ 121 (383)
++|++++|+|-.-....+. ........+. .+.+.+++.+||.+++ +||+++.....+.. ......+.+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~-~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVA-TLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHH-HHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHH
Confidence 5799999999431110110 0001111222 2333345568999887 99999854311100 011223333
Q ss_pred HHhhcCCCCCcEEEecCCCCCCCC
Q 016783 122 HQMLGTFLGVPFHVLLGDRDVGEC 145 (383)
Q Consensus 122 ~~i~~~~~~~p~~~v~GNHD~~~~ 145 (383)
+.+ +. -+.++||||+.++
T Consensus 80 n~~-----g~-d~~~lGNHe~d~g 97 (277)
T cd07410 80 NAL-----GY-DAGTLGNHEFNYG 97 (277)
T ss_pred Hhc-----CC-CEEeecccCcccC
Confidence 332 33 3667799998654
No 66
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.48 E-value=5.5e-07 Score=81.94 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=61.8
Q ss_pred ceEEEEEecCCCCCCCC----C-cccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhc
Q 016783 52 DLKVMMVANLLLVGSDS----G-FVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLG 126 (383)
Q Consensus 52 ~~~i~~isD~hl~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~ 126 (383)
.-+.+++||+|++-+.. + .+-+..++ .+.+.+.+.+...+|+.+|++||+.++.......++.+ ...|.+..+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~-~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~-~~~f~~~~~ 96 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTD-RILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEE-VREFLELLD 96 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHH-HHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHH-HHHHHHHhc
Confidence 45789999999964321 1 11122232 34445566788999999999999999887666666644 666777765
Q ss_pred CCCCCcEEEecCCCCCCCC
Q 016783 127 TFLGVPFHVLLGDRDVGEC 145 (383)
Q Consensus 127 ~~~~~p~~~v~GNHD~~~~ 145 (383)
. .-++++.||||-+..
T Consensus 97 ~---~evi~i~GNHD~~i~ 112 (235)
T COG1407 97 E---REVIIIRGNHDNGIE 112 (235)
T ss_pred c---CcEEEEeccCCCccc
Confidence 3 259999999998653
No 67
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.44 E-value=1.8e-05 Score=74.20 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHcCCceEEeccCCCCce
Q 016783 280 PLNATEYIFQALKPKIIFSAHAHEFCD 306 (383)
Q Consensus 280 ~~e~~~~ll~~~~v~lvfsGH~H~~~~ 306 (383)
.......+++.++|+..||||.|...+
T Consensus 204 Gs~~~~~ll~~lkPryhf~gH~H~~f~ 230 (262)
T cd00844 204 GSPAAEELLKHLKPRYWFSAHLHVKFA 230 (262)
T ss_pred CCHHHHHHHHHhCCCEEEEecCCcccc
Confidence 344678999999999999999999664
No 68
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.39 E-value=1.2e-05 Score=81.58 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=51.8
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCC--------------------
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSE-------------------- 108 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~-------------------- 108 (383)
+...+||++.|+-+.... + ...+..+.+..+||++|++||.+.+...
T Consensus 102 ~~~~~r~a~~SC~~~~~~---~----------~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~ 168 (453)
T PF09423_consen 102 DPDPFRFAFGSCQNYEDG---Y----------FPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHE 168 (453)
T ss_dssp ----EEEEEE----CCC----------------HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S-----SSSS
T ss_pred CCCceEEEEECCCCcccC---h----------HHHHHhhhccCCCcEEEEeCCeeeccCCcccccccccccccccccccc
Confidence 345699999999887321 1 1234454554799999999999865421
Q ss_pred -CChhcHHHHH------HHHHHhhcCCCCCcEEEecCCCCCCCCCC-----CC----h-------hHHHHHHhhCCCC--
Q 016783 109 -LTRSDWLPVL------DRFHQMLGTFLGVPFHVLLGDRDVGECSG-----LD----T-------GSVDWIAGNFPGL-- 163 (383)
Q Consensus 109 -~~~~~~~~~~------~~~~~i~~~~~~~p~~~v~GNHD~~~~~~-----~~----~-------~~~~~f~~~f~~~-- 163 (383)
.+-++|...+ ..++++++ .+|++++.=+||+..... .. . ...+.|.++.+..
T Consensus 169 ~~~l~~yR~~y~~~~~~p~l~~~~~---~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r~~ 245 (453)
T PF09423_consen 169 AETLDDYRRRYRQYRSDPDLRRLHA---NVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVRNP 245 (453)
T ss_dssp --SHHHHHHHHHHHHT-HHHHHHHH---HSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS---GG
T ss_pred cccHHHHHHHHHHHcCCHHHHHHhh---cccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhhcCccCC
Confidence 0111222211 12223322 579999999999953221 10 0 1123344433221
Q ss_pred -----CCCCCceEEECC-EEEEEeccccccc
Q 016783 164 -----DSSGCGAFEISN-ISFLSLNAVALLC 188 (383)
Q Consensus 164 -----~~~~~~~~~~~~-v~fi~Lds~~~~~ 188 (383)
....++.|.+|+ +.|++||+-....
T Consensus 246 ~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~ 276 (453)
T PF09423_consen 246 DPPGDQGRIYRSFRYGDLVEFFMLDTRSYRS 276 (453)
T ss_dssp G-BTTB----EEEEETTTEEEEE--SSSS--
T ss_pred CccCCCCceEEEEecCCceeEEEEechhccc
Confidence 122457899999 9999999986543
No 69
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.39 E-value=8.1e-07 Score=77.87 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=43.2
Q ss_pred EEEecCCCCCCCCCc--ccccchHHHHHHHHHHHHhh--CCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 56 MMVANLLLVGSDSGF--VDRHFRDYYMAKFFRKSFHT--LNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 56 ~~isD~hl~~~~~~~--~~~~~~~~~l~~~~~~~~~~--~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
.++||+|++...... .........+.+++.+.+++ .++|.|+++||+++.+.. .. ..+.+.++ +.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~---~~---~~~~l~~~-----~~ 70 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKA---GT---ELELLSRL-----NG 70 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCCh---HH---HHHHHHhC-----CC
Confidence 579999996432100 00111111122333333333 268999999999997652 11 12223322 45
Q ss_pred cEEEecCCCCCC
Q 016783 132 PFHVLLGDRDVG 143 (383)
Q Consensus 132 p~~~v~GNHD~~ 143 (383)
|+++|+||||..
T Consensus 71 ~~~~v~GNHD~~ 82 (168)
T cd07390 71 RKHLIKGNHDSS 82 (168)
T ss_pred CeEEEeCCCCch
Confidence 899999999964
No 70
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.38 E-value=1.9e-05 Score=74.09 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=41.9
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
++|++++|+|-.-.... .....-..+...+ +.++..++++++.+||+++.....+........+.++.+ +..
T Consensus 1 i~il~~~D~H~~~~~~~--~~~~g~~~l~~~i-~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~-----g~d 72 (257)
T cd07408 1 ITILHTNDIHGRIDEDD--NNGIGYAKLATYK-KEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAV-----GYD 72 (257)
T ss_pred CEEEEeccCcccccCCC--CccccHHHHHHHH-HHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhc-----CCc
Confidence 47999999996421100 0000111122222 223323678899999999864322111111222222222 444
Q ss_pred EEEecCCCCCCCC
Q 016783 133 FHVLLGDRDVGEC 145 (383)
Q Consensus 133 ~~~v~GNHD~~~~ 145 (383)
+ .++||||+.++
T Consensus 73 ~-~~~GNHefd~G 84 (257)
T cd07408 73 A-VTPGNHEFDYG 84 (257)
T ss_pred E-EccccccccCC
Confidence 4 56799998654
No 71
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=98.38 E-value=1e-05 Score=75.45 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=66.0
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh-----------hCCCCEEEEcCCCCCCCCCCCh-----------
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH-----------TLNPDMLLVLGDVSAKGSELTR----------- 111 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~PD~vi~~GDl~d~~~~~~~----------- 111 (383)
+|+++||+|+++..... ...++ |.+-+. ..+..-+|++||.++......+
T Consensus 1 ~i~~vSgL~ig~~~~~~-----~~l~l---l~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~ 72 (257)
T cd07387 1 YIALVSGLGLGGNAESS-----LSLQL---LVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKK 72 (257)
T ss_pred CEEEEcccccCCCccch-----HHHHH---HHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccc
Confidence 37999999997653110 01111 222221 1233468999999985422111
Q ss_pred --hcHHHHHHHHHHhhcC-CCCCcEEEecCCCCCCCCCCCChh-HHHHHHhh--CCCCC-CCCCceEEECCEEEEEeccc
Q 016783 112 --SDWLPVLDRFHQMLGT-FLGVPFHVLLGDRDVGECSGLDTG-SVDWIAGN--FPGLD-SSGCGAFEISNISFLSLNAV 184 (383)
Q Consensus 112 --~~~~~~~~~~~~i~~~-~~~~p~~~v~GNHD~~~~~~~~~~-~~~~f~~~--f~~~~-~~~~~~~~~~~v~fi~Lds~ 184 (383)
..-.+.++.+.+.+.. ...+|+..+|||||-.......+. ...-|.+. +.... ....+.|+++|++|++-...
T Consensus 73 ~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGq 152 (257)
T cd07387 73 SSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQ 152 (257)
T ss_pred cchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEEECCC
Confidence 0112235555555542 347899999999998543322111 12223221 11100 11236899999999996655
Q ss_pred cc
Q 016783 185 AL 186 (383)
Q Consensus 185 ~~ 186 (383)
..
T Consensus 153 ni 154 (257)
T cd07387 153 NV 154 (257)
T ss_pred CH
Confidence 43
No 72
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.1e-05 Score=79.77 Aligned_cols=123 Identities=14% Similarity=0.161 Sum_probs=68.8
Q ss_pred CCCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCC--------CCEEEEcCCCCCCCC-CCCh------h
Q 016783 48 GSGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLN--------PDMLLVLGDVSAKGS-ELTR------S 112 (383)
Q Consensus 48 ~~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------PD~vi~~GDl~d~~~-~~~~------~ 112 (383)
+..+.++++++||.|.+... .+.+.|...+..++ ...+++.||++|+.. .... .
T Consensus 221 ~~~e~v~v~~isDih~GSk~-----------F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~ 289 (481)
T COG1311 221 TGDERVYVALISDIHRGSKE-----------FLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIA 289 (481)
T ss_pred CCCcceEEEEEeeeecccHH-----------HHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccc
Confidence 45678999999999996533 12233444443322 257899999999432 1111 1
Q ss_pred cHHHHHHHHHHhhcC-CCCCcEEEecCCCCCCCCCCCChhHHHHHHhhCCCCC---CCCCceEEECCEEEEEe
Q 016783 113 DWLPVLDRFHQMLGT-FLGVPFHVLLGDRDVGECSGLDTGSVDWIAGNFPGLD---SSGCGAFEISNISFLSL 181 (383)
Q Consensus 113 ~~~~~~~~~~~i~~~-~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~---~~~~~~~~~~~v~fi~L 181 (383)
.-.+.++.|.+.|.. ...+.+++.|||||---.....+.....-+..|...+ .+..+.++++|+.++.-
T Consensus 290 di~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~ 362 (481)
T COG1311 290 DIYEQYEELAEFLDQVPEHIKVFIMPGNHDAVRQALPQPHFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIY 362 (481)
T ss_pred cchHHHHHHHHHHhhCCCCceEEEecCCCCccccccCCCCcchhhcccccccceEecCCCcEEEECCEEEEEe
Confidence 112235666666652 4578899999999984433333322111122221110 11235678888776664
No 73
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.31 E-value=0.00012 Score=68.81 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=42.3
Q ss_pred eEEEEEecCCCCCCCCCc----------ccccchHHHHHHHHHHHHhhC-CCCEEE-EcCCCCCCCCCCChhcHHHHHHH
Q 016783 53 LKVMMVANLLLVGSDSGF----------VDRHFRDYYMAKFFRKSFHTL-NPDMLL-VLGDVSAKGSELTRSDWLPVLDR 120 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~-~PD~vi-~~GDl~d~~~~~~~~~~~~~~~~ 120 (383)
++|++++|+|-.-....+ ....---..+. .+.+.++.. +||+++ .+||+++..............+.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~-~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ 79 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIA-TLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDA 79 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHH-HHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHH
Confidence 478999999975221100 00111111222 233334445 899885 59999976532111111122222
Q ss_pred HHHhhcCCCCCcEEEecCCCCCCCC
Q 016783 121 FHQMLGTFLGVPFHVLLGDRDVGEC 145 (383)
Q Consensus 121 ~~~i~~~~~~~p~~~v~GNHD~~~~ 145 (383)
++. +++.++.||||+.++
T Consensus 80 l~~-------~g~da~~GNHefd~g 97 (264)
T cd07411 80 LNA-------LGVDAMVGHWEFTYG 97 (264)
T ss_pred HHh-------hCCeEEecccccccC
Confidence 222 355555599998654
No 74
>PHA02239 putative protein phosphatase
Probab=98.23 E-value=2.5e-06 Score=78.84 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=44.9
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhC-CCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTL-NPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
+++++|||+|- . . ..+.+.+..+.... ..|.++++||++|.|..+ .+.++.+.+++.. ..
T Consensus 1 m~~~~IsDIHG-~-~----------~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s-----~~v~~~l~~~~~~--~~ 61 (235)
T PHA02239 1 MAIYVVPDIHG-E-Y----------QKLLTIMDKINNERKPEETIVFLGDYVDRGKRS-----KDVVNYIFDLMSN--DD 61 (235)
T ss_pred CeEEEEECCCC-C-H----------HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCCh-----HHHHHHHHHHhhc--CC
Confidence 47899999994 2 1 11223233322222 359999999999988642 2344555554321 34
Q ss_pred cEEEecCCCCC
Q 016783 132 PFHVLLGDRDV 142 (383)
Q Consensus 132 p~~~v~GNHD~ 142 (383)
++++|+||||.
T Consensus 62 ~~~~l~GNHE~ 72 (235)
T PHA02239 62 NVVTLLGNHDD 72 (235)
T ss_pred CeEEEECCcHH
Confidence 79999999996
No 75
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.19 E-value=0.00023 Score=67.61 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=28.7
Q ss_pred HhhCCCCEEEE-cCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCCCCCC
Q 016783 88 FHTLNPDMLLV-LGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDVGECS 146 (383)
Q Consensus 88 ~~~~~PD~vi~-~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~~~~~ 146 (383)
+++..|+.+++ .||+++.....+...-....+.++.+ ++. ..++||||+.++.
T Consensus 44 ~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~-----g~D-~~~lGNHefd~G~ 97 (281)
T cd07409 44 LRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL-----GYD-AMTLGNHEFDDGV 97 (281)
T ss_pred HHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc-----CCC-EEEeccccccCCH
Confidence 34457886655 99999865432211112222323222 444 4456999997653
No 76
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.12 E-value=0.00025 Score=73.86 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=15.5
Q ss_pred HHHHHc---CCceEEeccCCCCc
Q 016783 286 YIFQAL---KPKIIFSAHAHEFC 305 (383)
Q Consensus 286 ~ll~~~---~v~lvfsGH~H~~~ 305 (383)
.|.++. ++++|++||.|...
T Consensus 236 ~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 236 EMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred HHHHhCCccCceEEEeCCCCccc
Confidence 455555 69999999999854
No 77
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.11 E-value=0.00019 Score=60.77 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=42.0
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHH-HHHhhCCC-CEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFR-KSFHTLNP-DMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLG 130 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~P-D~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (383)
-.+-++||+|++.+.---+..+.+-....+++. ...+..+| |.+-++||+.-.... +..+.++.+.+ .+
T Consensus 4 ~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~------~~~a~~IlerL---nG 74 (186)
T COG4186 4 TMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANR------ERAAGLILERL---NG 74 (186)
T ss_pred eEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccch------hhHHHHHHHHc---CC
Confidence 457899999996543100001111111111121 12345566 677899999854321 12233333333 23
Q ss_pred CcEEEecCCCCC
Q 016783 131 VPFHVLLGDRDV 142 (383)
Q Consensus 131 ~p~~~v~GNHD~ 142 (383)
-+..|+||||-
T Consensus 75 -rkhlv~GNhDk 85 (186)
T COG4186 75 -RKHLVPGNHDK 85 (186)
T ss_pred -cEEEeeCCCCC
Confidence 46999999996
No 78
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=98.06 E-value=0.00036 Score=69.80 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHH------
Q 016783 50 GVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQ------ 123 (383)
Q Consensus 50 ~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~------ 123 (383)
++.+||++.||.|++-.........++-....+ +..+....+.|+|+..||||++..++....+ ...+.|++
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeE-Il~iA~e~~VDmiLlGGDLFHeNkPSr~~L~-~~i~lLRryClgdk 88 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEE-ILEIAQENDVDMILLGGDLFHENKPSRKTLH-RCLELLRRYCLGDK 88 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHH-HHHHHHhcCCcEEEecCcccccCCccHHHHH-HHHHHHHHHccCCC
Confidence 578999999999996433211111111111111 2233457889999999999999876543322 22333332
Q ss_pred -----hh------------cC--------CCCCcEEEecCCCCCCCCCC-CChh---HHHHHHhhCCC
Q 016783 124 -----ML------------GT--------FLGVPFHVLLGDRDVGECSG-LDTG---SVDWIAGNFPG 162 (383)
Q Consensus 124 -----i~------------~~--------~~~~p~~~v~GNHD~~~~~~-~~~~---~~~~f~~~f~~ 162 (383)
++ .. .-++||+-+-||||-..+.. .++- ...-+-.+||.
T Consensus 89 P~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk 156 (646)
T KOG2310|consen 89 PVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGK 156 (646)
T ss_pred ceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhcc
Confidence 11 00 01579999999999855442 2221 12345556664
No 79
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.05 E-value=0.00052 Score=77.47 Aligned_cols=82 Identities=21% Similarity=0.206 Sum_probs=45.7
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEE-cCCCCCCCCCCChhcHHHHHHHHHHhhcC
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLV-LGDVSAKGSELTRSDWLPVLDRFHQMLGT 127 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~-~GDl~d~~~~~~~~~~~~~~~~~~~i~~~ 127 (383)
+...++|++++|+|-. ..+ .. .+.. +.+.+.+.+||++++ .||+++.....+........+.++.+
T Consensus 657 ~~~~l~Il~~nD~Hg~--l~g-~~------r~~~-~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l--- 723 (1163)
T PRK09419 657 DNWELTILHTNDFHGH--LDG-AA------KRVT-KIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEM--- 723 (1163)
T ss_pred CceEEEEEEEeecccC--CCC-HH------HHHH-HHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCc---
Confidence 3456999999999932 111 11 1222 223345568999877 99999865322211222223333321
Q ss_pred CCCCcEEEecCCCCCCCCC
Q 016783 128 FLGVPFHVLLGDRDVGECS 146 (383)
Q Consensus 128 ~~~~p~~~v~GNHD~~~~~ 146 (383)
+ .-++++||||+.++.
T Consensus 724 --g-~d~~~~GNHEfd~g~ 739 (1163)
T PRK09419 724 --G-YDASTFGNHEFDWGP 739 (1163)
T ss_pred --C-CCEEEecccccccCh
Confidence 2 236699999996544
No 80
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.02 E-value=0.0027 Score=60.53 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=40.9
Q ss_pred eEEEEEecCCCCCCCCCcc--cccchHHHHHHHHHHHHhhCCCC-EEEEcCCCCCCCCCC-ChhcHHHHHHHHHHhhcCC
Q 016783 53 LKVMMVANLLLVGSDSGFV--DRHFRDYYMAKFFRKSFHTLNPD-MLLVLGDVSAKGSEL-TRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~PD-~vi~~GDl~d~~~~~-~~~~~~~~~~~~~~i~~~~ 128 (383)
++|++++|+|-.-....+. .....-..+...+ +.++..+|+ +++..||+++..... ....-....+.++.+
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i-~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~---- 75 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYL-DEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAM---- 75 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHH-HHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhh----
Confidence 4799999999321111110 0000111222222 223344565 678899999654321 111111223333332
Q ss_pred CCCcEEEecCCCCCCCC
Q 016783 129 LGVPFHVLLGDRDVGEC 145 (383)
Q Consensus 129 ~~~p~~~v~GNHD~~~~ 145 (383)
++- ..++||||+.++
T Consensus 76 -g~D-a~t~GNHefd~G 90 (288)
T cd07412 76 -GVD-ASAVGNHEFDEG 90 (288)
T ss_pred -CCe-eeeecccccccC
Confidence 333 577799999654
No 81
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.96 E-value=0.0012 Score=62.69 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=43.5
Q ss_pred CceEEEEEecCCCC--CCCC--CcccccchHHHHHHHHHHHHhhCCCCEE-EEcCCCCCCCCCCChh--cHHHHHHHHHH
Q 016783 51 VDLKVMMVANLLLV--GSDS--GFVDRHFRDYYMAKFFRKSFHTLNPDML-LVLGDVSAKGSELTRS--DWLPVLDRFHQ 123 (383)
Q Consensus 51 ~~~~i~~isD~hl~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~PD~v-i~~GDl~d~~~~~~~~--~~~~~~~~~~~ 123 (383)
..++|++.+|+|-. +... .....+-+-..+.+.+++...+.+|+.+ +-.||.++.....+.. ......+ +.+
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~-~mN 82 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNP-IFR 82 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHH-HHH
Confidence 56899999999942 1100 0000011111122223333334567755 5699999865432221 2222222 222
Q ss_pred hhcCCCCCcEEEecCCCCCCC
Q 016783 124 MLGTFLGVPFHVLLGDRDVGE 144 (383)
Q Consensus 124 i~~~~~~~p~~~v~GNHD~~~ 144 (383)
.+. -=.+++||||+..
T Consensus 83 ~mg-----yDa~tlGNHEFd~ 98 (282)
T cd07407 83 MMP-----YDLLTIGNHELYN 98 (282)
T ss_pred hcC-----CcEEeecccccCc
Confidence 221 2378899999954
No 82
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.91 E-value=0.001 Score=63.38 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=15.5
Q ss_pred HHHHH---cCCceEEeccCCCCc
Q 016783 286 YIFQA---LKPKIIFSAHAHEFC 305 (383)
Q Consensus 286 ~ll~~---~~v~lvfsGH~H~~~ 305 (383)
++.++ -++++|++||.|...
T Consensus 200 ~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 200 EMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred HHHHhcCCCCCCEEEeCCCCccc
Confidence 44444 379999999999976
No 83
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.90 E-value=1.7e-05 Score=74.97 Aligned_cols=67 Identities=19% Similarity=0.373 Sum_probs=42.9
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh-hCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH-TLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
+++++|||+|-.-. .+.+.+.+ ++ ..++|.++++||++|.|..+ .+.++.+.++ +.
T Consensus 1 M~~~vIGDIHG~~~------------~l~~ll~~-~~~~~~~D~li~lGDlVdrGp~s-----~~vl~~l~~l-----~~ 57 (275)
T PRK00166 1 MATYAIGDIQGCYD------------ELQRLLEK-IDFDPAKDTLWLVGDLVNRGPDS-----LEVLRFVKSL-----GD 57 (275)
T ss_pred CcEEEEEccCCCHH------------HHHHHHHh-cCCCCCCCEEEEeCCccCCCcCH-----HHHHHHHHhc-----CC
Confidence 47899999995211 12222222 22 23689999999999988632 2334444432 34
Q ss_pred cEEEecCCCCC
Q 016783 132 PFHVLLGDRDV 142 (383)
Q Consensus 132 p~~~v~GNHD~ 142 (383)
++++|.||||.
T Consensus 58 ~~~~VlGNHD~ 68 (275)
T PRK00166 58 SAVTVLGNHDL 68 (275)
T ss_pred CeEEEecChhH
Confidence 78999999996
No 84
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.74 E-value=4.5e-05 Score=70.51 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCC
Q 016783 93 PDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDV 142 (383)
Q Consensus 93 PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~ 142 (383)
.|.++++||++|.|..+ .+.++.+.++.. .-.+++|.||||.
T Consensus 38 ~d~lv~lGDlIDrG~~s-----~evl~~l~~l~~---~~~~~~v~GNHE~ 79 (234)
T cd07423 38 GRRAVFVGDLVDRGPDS-----PEVLRLVMSMVA---AGAALCVPGNHDN 79 (234)
T ss_pred CCEEEEECCccCCCCCH-----HHHHHHHHHHhh---CCcEEEEECCcHH
Confidence 68999999999988632 234455554432 1258899999996
No 85
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.72 E-value=4.2e-05 Score=69.31 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=40.4
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh-hCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH-TLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
||+++||+|- .. . .+.+.+.. +. ..++|.++++||++|.|... .+.++.+.+ .+
T Consensus 2 ri~~isDiHg--~~----~------~l~~~l~~-~~~~~~~d~~~~~GD~v~~g~~~-----~~~~~~l~~-------~~ 56 (207)
T cd07424 2 RDFVVGDIHG--HY----S------LLQKALDA-VGFDPARDRLISVGDLIDRGPES-----LACLELLLE-------PW 56 (207)
T ss_pred CEEEEECCCC--CH----H------HHHHHHHH-cCCCCCCCEEEEeCCcccCCCCH-----HHHHHHHhc-------CC
Confidence 6899999993 21 0 12222222 22 24689999999999988532 122222221 36
Q ss_pred EEEecCCCCCC
Q 016783 133 FHVLLGDRDVG 143 (383)
Q Consensus 133 ~~~v~GNHD~~ 143 (383)
+++|.||||..
T Consensus 57 ~~~v~GNhe~~ 67 (207)
T cd07424 57 FHAVRGNHEQM 67 (207)
T ss_pred EEEeECCChHH
Confidence 89999999963
No 86
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.68 E-value=4.3e-05 Score=69.85 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=40.9
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhh-CCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHT-LNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
|+.+|||+|-.-. .+.+.+.+ +.. .+.|.++++||++|.|..+ .+.++.+.+ ..
T Consensus 18 ri~vigDIHG~~~------------~L~~lL~~-i~~~~~~D~li~lGDlvDrGp~s-----~~vl~~l~~-------~~ 72 (218)
T PRK11439 18 HIWLVGDIHGCFE------------QLMRKLRH-CRFDPWRDLLISVGDLIDRGPQS-----LRCLQLLEE-------HW 72 (218)
T ss_pred eEEEEEcccCCHH------------HHHHHHHh-cCCCcccCEEEEcCcccCCCcCH-----HHHHHHHHc-------CC
Confidence 8999999998321 12222222 222 2579999999999998642 123333332 24
Q ss_pred EEEecCCCCC
Q 016783 133 FHVLLGDRDV 142 (383)
Q Consensus 133 ~~~v~GNHD~ 142 (383)
+++|.||||.
T Consensus 73 ~~~v~GNHE~ 82 (218)
T PRK11439 73 VRAVRGNHEQ 82 (218)
T ss_pred ceEeeCchHH
Confidence 6899999995
No 87
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.62 E-value=8.4e-05 Score=69.21 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=29.6
Q ss_pred CCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCC
Q 016783 93 PDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDV 142 (383)
Q Consensus 93 PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~ 142 (383)
-|.+|++||++|.|..+ .+.++.+.++.. .-.+++|.||||.
T Consensus 37 ~d~li~lGDliDRGp~S-----~~vl~~~~~~~~---~~~~~~l~GNHE~ 78 (245)
T PRK13625 37 QRKLAFVGDLTDRGPHS-----LRMIEIVWELVE---KKAAYYVPGNHCN 78 (245)
T ss_pred CCEEEEECcccCCCcCh-----HHHHHHHHHHhh---CCCEEEEeCccHH
Confidence 47999999999998642 233444444432 2379999999985
No 88
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.54 E-value=0.00012 Score=68.44 Aligned_cols=41 Identities=27% Similarity=0.512 Sum_probs=29.7
Q ss_pred CCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCC
Q 016783 92 NPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDV 142 (383)
Q Consensus 92 ~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~ 142 (383)
+.|.++++||++|.|..+ .+.++.+.++ +-.+++|.||||.
T Consensus 26 ~~D~Li~lGDlVdRGp~s-----~evl~~l~~l-----~~~v~~VlGNHD~ 66 (257)
T cd07422 26 AKDRLWLVGDLVNRGPDS-----LETLRFVKSL-----GDSAKTVLGNHDL 66 (257)
T ss_pred CCCEEEEecCcCCCCcCH-----HHHHHHHHhc-----CCCeEEEcCCchH
Confidence 579999999999998642 2334444443 2368999999996
No 89
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.53 E-value=0.00011 Score=67.17 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=40.6
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh-hCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH-TLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
|+++|||+|-.-. .+.+.+.. +. ..+.|.++++||++|.|..+ .+.++.+.+ -.
T Consensus 16 ri~visDiHg~~~------------~l~~~l~~-~~~~~~~d~l~~lGD~vdrG~~~-----~~~l~~l~~-------~~ 70 (218)
T PRK09968 16 HIWVVGDIHGEYQ------------LLQSRLHQ-LSFCPETDLLISVGDNIDRGPES-----LNVLRLLNQ-------PW 70 (218)
T ss_pred eEEEEEeccCCHH------------HHHHHHHh-cCCCCCCCEEEECCCCcCCCcCH-----HHHHHHHhh-------CC
Confidence 8999999996211 12222222 22 34679999999999988642 122332321 25
Q ss_pred EEEecCCCCC
Q 016783 133 FHVLLGDRDV 142 (383)
Q Consensus 133 ~~~v~GNHD~ 142 (383)
+++|.||||-
T Consensus 71 ~~~v~GNHE~ 80 (218)
T PRK09968 71 FISVKGNHEA 80 (218)
T ss_pred cEEEECchHH
Confidence 7899999995
No 90
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.50 E-value=0.00015 Score=65.85 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=32.2
Q ss_pred CCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhc--CCCCCcEEEecCCCCCC
Q 016783 91 LNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLG--TFLGVPFHVLLGDRDVG 143 (383)
Q Consensus 91 ~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~--~~~~~p~~~v~GNHD~~ 143 (383)
.+.|.++++||++|.|... . +.++.+.++.. ...+.++++|.||||..
T Consensus 31 ~~~d~lv~lGD~vdrG~~~--~---~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 31 GGSTHLVQLGDIFDRGPDV--I---EILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CCCcEEEEECCCcCCCcCH--H---HHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4689999999999988632 2 23333443321 11246899999999973
No 91
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.49 E-value=0.00026 Score=64.60 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=33.2
Q ss_pred HhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCCC
Q 016783 88 FHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDVG 143 (383)
Q Consensus 88 ~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~~ 143 (383)
+...++|.+|++||++|.|... .+.++.+.++... ..++++|.||||..
T Consensus 20 ~~~~~~d~li~lGD~vdrg~~~-----~~~l~~l~~~~~~--~~~~~~l~GNHe~~ 68 (225)
T cd00144 20 IGFPPNDKLIFLGDYVDRGPDS-----VEVIDLLLALKIL--PDNVILLRGNHEDM 68 (225)
T ss_pred hCCCCCCEEEEECCEeCCCCCc-----HHHHHHHHHhcCC--CCcEEEEccCchhh
Confidence 3445789999999999988642 2334444433211 34799999999974
No 92
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.44 E-value=0.00023 Score=65.32 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=31.1
Q ss_pred CCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCC
Q 016783 92 NPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDV 142 (383)
Q Consensus 92 ~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~ 142 (383)
..|.+|++||++|.|..+ .+.++.+.++.+. -.+++|.||||.
T Consensus 33 ~~d~lvflGD~IDRGp~S-----~~vl~~l~~l~~~---~~~~~l~GNHE~ 75 (222)
T cd07413 33 PERQVVFLGDLIDRGPEI-----RELLEIVKSMVDA---GHALAVMGNHEF 75 (222)
T ss_pred CCCEEEEeCcccCCCCCH-----HHHHHHHHHhhcC---CCEEEEEccCcH
Confidence 468999999999999642 3445555554321 268999999996
No 93
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.42 E-value=0.00035 Score=66.00 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=41.8
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhh-----CCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCC
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHT-----LNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~ 128 (383)
++.+|+|+|-.-. .+.+.+..+... ...+.+||+||++|.|..+ .+.++.+.+.-...
T Consensus 3 ~iyaIGDIHG~~d------------~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS-----~eVld~L~~l~~~~ 65 (304)
T cd07421 3 VVICVGDIHGYIS------------KLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPET-----RKVIDFLISLPEKH 65 (304)
T ss_pred eEEEEEeccCCHH------------HHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCH-----HHHHHHHHHhhhcc
Confidence 6899999997321 122222221111 2357899999999998632 23344444422211
Q ss_pred CCCcEEEecCCCCCC
Q 016783 129 LGVPFHVLLGDRDVG 143 (383)
Q Consensus 129 ~~~p~~~v~GNHD~~ 143 (383)
....++++.||||..
T Consensus 66 ~~~~vv~LrGNHE~~ 80 (304)
T cd07421 66 PKQRHVFLCGNHDFA 80 (304)
T ss_pred cccceEEEecCChHH
Confidence 112578999999953
No 94
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.41 E-value=0.0071 Score=68.43 Aligned_cols=56 Identities=23% Similarity=0.270 Sum_probs=30.3
Q ss_pred CceEEEEEecCCCCCCCCCccc-c---cchHHHHHHHHHHHHhhCCCCEEEE-cCCCCCCCC
Q 016783 51 VDLKVMMVANLLLVGSDSGFVD-R---HFRDYYMAKFFRKSFHTLNPDMLLV-LGDVSAKGS 107 (383)
Q Consensus 51 ~~~~i~~isD~hl~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~PD~vi~-~GDl~d~~~ 107 (383)
..++|++.+|+|-.-....+.. + ...-..+. ++.+.+....|+.+++ .||+++...
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~a-t~i~~~r~~~~n~llld~GD~~qGs~ 100 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTA-TLIKKARKENPNTLLVDNGDLIQGNP 100 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHH-HHHHHHHHhCCCeEEEeCCCccCCCh
Confidence 5799999999996421111110 0 00001121 2223334456887766 999998653
No 95
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.41 E-value=0.0075 Score=62.79 Aligned_cols=49 Identities=14% Similarity=0.075 Sum_probs=26.6
Q ss_pred CCC-EEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCCCCCC
Q 016783 92 NPD-MLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDVGECS 146 (383)
Q Consensus 92 ~PD-~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~~~~~ 146 (383)
.|. +++..||.++.....+...-....+ +.+.+ + --..++||||+.++.
T Consensus 48 ~~n~l~ldaGD~~~gs~~~~~~~g~~~i~-~~N~~----g-~Da~~lGNHEFd~G~ 97 (550)
T TIGR01530 48 SKNALVLHAGDAIIGTLYFTLFGGRADAA-LMNAA----G-FDFFTLGNHEFDAGN 97 (550)
T ss_pred CCCeEEEECCCCCCCccchhhcCCHHHHH-HHhcc----C-CCEEEeccccccCCH
Confidence 454 5678999997654322211122222 22221 1 237889999997653
No 96
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.26 E-value=0.00042 Score=65.24 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=41.1
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh-hCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH-TLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
.+.+|+|+|-.-+ .+.+.+.+ ++ ....|.++++||+++.|..+ .+.++.++++ +-.
T Consensus 2 ~~YvIGDIHGc~d------------aL~~LL~~-i~f~~~~D~l~~lGDlVdRGP~s-----levL~~l~~l-----~~~ 58 (279)
T TIGR00668 2 ATYLIGDLHGCYD------------ELQALLER-VEFDPGQDTLWLTGDLVARGPGS-----LEVLRYVKSL-----GDA 58 (279)
T ss_pred cEEEEEcccCCHH------------HHHHHHHH-hCcCCCCCEEEEeCCccCCCCCH-----HHHHHHHHhc-----CCC
Confidence 4688999997321 12222322 22 23569999999999998642 2334444433 224
Q ss_pred EEEecCCCCC
Q 016783 133 FHVLLGDRDV 142 (383)
Q Consensus 133 ~~~v~GNHD~ 142 (383)
+.+|.||||.
T Consensus 59 ~~~VlGNHD~ 68 (279)
T TIGR00668 59 VRLVLGNHDL 68 (279)
T ss_pred eEEEEChhHH
Confidence 6799999996
No 97
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.25 E-value=0.022 Score=53.22 Aligned_cols=109 Identities=16% Similarity=0.276 Sum_probs=59.1
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcE
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPF 133 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~ 133 (383)
||++++|.= |.. .+ ..+.+.+.+..++.++|++|..||.+..+...+ .+.++.+.++ ++-+
T Consensus 1 ~ilfigdi~--g~~----G~----~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~----~~~~~~L~~~-----G~D~ 61 (255)
T cd07382 1 KILFIGDIV--GKP----GR----KAVKEHLPKLKKEYKIDFVIANGENAAGGKGIT----PKIAKELLSA-----GVDV 61 (255)
T ss_pred CEEEEEeCC--CHH----HH----HHHHHHHHHHHHHCCCCEEEECCccccCCCCCC----HHHHHHHHhc-----CCCE
Confidence 578888862 221 11 123344445556778999999999988764333 2334444443 5555
Q ss_pred EEecCCCCCCCCCCCChhHHHHHHhhCCCCC------CCCCceEEECCEEEEEeccc
Q 016783 134 HVLLGDRDVGECSGLDTGSVDWIAGNFPGLD------SSGCGAFEISNISFLSLNAV 184 (383)
Q Consensus 134 ~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~------~~~~~~~~~~~v~fi~Lds~ 184 (383)
+.+ |||++..+. +. ..++.......+.+ ...+..++.+|.++-+++-.
T Consensus 62 iTl-GNH~fD~ge-l~-~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~ 115 (255)
T cd07382 62 ITM-GNHTWDKKE-IL-DFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLM 115 (255)
T ss_pred EEe-cccccCcch-HH-HHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEe
Confidence 555 999996542 10 00111111111111 12345678889887777654
No 98
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=97.17 E-value=0.00087 Score=60.64 Aligned_cols=122 Identities=10% Similarity=0.016 Sum_probs=58.2
Q ss_pred EEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh-hCCCCEEEEcCCCCCCCCCCC--------hhcHHHHHHHHHHhh
Q 016783 55 VMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH-TLNPDMLLVLGDVSAKGSELT--------RSDWLPVLDRFHQML 125 (383)
Q Consensus 55 i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~PD~vi~~GDl~d~~~~~~--------~~~~~~~~~~~~~i~ 125 (383)
|+++||+|+.++.. . ....+.+...+. ..+|+.+|++|++++...... ..........+.+.+
T Consensus 1 Iv~~Sg~~~~~~~~-------~-~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (209)
T PF04042_consen 1 IVFASGPFLDSDNL-------S-LEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFL 72 (209)
T ss_dssp EEEEES--CTTT-H-------H-HHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHH
T ss_pred CEEEecCccCCCHh-------H-HHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHH
Confidence 68999999964331 0 111122223334 678999999999998532210 011112233344444
Q ss_pred cC-CCCCcEEEecCCCCCCCCCC-CCh----hHHHHHHhhCCCCCCCCCceEEECCEEEEEeccc
Q 016783 126 GT-FLGVPFHVLLGDRDVGECSG-LDT----GSVDWIAGNFPGLDSSGCGAFEISNISFLSLNAV 184 (383)
Q Consensus 126 ~~-~~~~p~~~v~GNHD~~~~~~-~~~----~~~~~f~~~f~~~~~~~~~~~~~~~v~fi~Lds~ 184 (383)
.. ..+++++.|||+||...... ..+ ....+..+...-.-.+....+.++|+.|++....
T Consensus 73 ~~i~~~~~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d 137 (209)
T PF04042_consen 73 ESILPSTQVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGD 137 (209)
T ss_dssp CCCHCCSEEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSH
T ss_pred hhcccccEEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCc
Confidence 42 24689999999999865421 111 1122222211000001236789999998886544
No 99
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.16 E-value=0.012 Score=56.90 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=15.2
Q ss_pred HHHHHc-CCceEEeccCCCCc
Q 016783 286 YIFQAL-KPKIIFSAHAHEFC 305 (383)
Q Consensus 286 ~ll~~~-~v~lvfsGH~H~~~ 305 (383)
.|.++. ++++|++||.|..-
T Consensus 225 ~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 225 ALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred HHHhcCCCCCEEEeCCCCccC
Confidence 344443 69999999999975
No 100
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=96.90 E-value=0.0068 Score=52.01 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=29.7
Q ss_pred hCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCC
Q 016783 90 TLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRD 141 (383)
Q Consensus 90 ~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD 141 (383)
..+.|++|++||++..... .++|.+++.--. ...+|+|++-|||+
T Consensus 24 ~gpFd~~ic~Gdff~~~~~--~~~~~~y~~g~~-----~~pipTyf~ggn~~ 68 (150)
T cd07380 24 KGPFDALLCVGDFFGDDED--DEELEAYKDGSK-----KVPIPTYFLGGNNP 68 (150)
T ss_pred cCCeeEEEEecCccCCccc--hhhHHHHhcCCc-----cCCCCEEEECCCCC
Confidence 4568999999999865432 233444332211 23689999999996
No 101
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.05 Score=56.27 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=47.1
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccc--hHHHHHHHHHHHHhhC-CCCEEEEcCCCCCCCCCCCh-hcHHHHHHHHHHh
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHF--RDYYMAKFFRKSFHTL-NPDMLLVLGDVSAKGSELTR-SDWLPVLDRFHQM 124 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~--~~~~l~~~~~~~~~~~-~PD~vi~~GDl~d~~~~~~~-~~~~~~~~~~~~i 124 (383)
....++|++.+|+|-.-....+..... -......++.+.+.+. +..++|-.||+++.....+. .......+-+..+
T Consensus 23 ~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m 102 (517)
T COG0737 23 ETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNAL 102 (517)
T ss_pred CceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhc
Confidence 456899999999998533110100000 0011112233333333 34556779999997443222 2222223323322
Q ss_pred hcCCCCCcEEEecCCCCCCCCC
Q 016783 125 LGTFLGVPFHVLLGDRDVGECS 146 (383)
Q Consensus 125 ~~~~~~~p~~~v~GNHD~~~~~ 146 (383)
. .=....|||++.++.
T Consensus 103 -~-----yDa~tiGNHEFd~g~ 118 (517)
T COG0737 103 -G-----YDAMTLGNHEFDYGL 118 (517)
T ss_pred -C-----CcEEeecccccccCH
Confidence 1 337889999997653
No 102
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=96.72 E-value=0.18 Score=47.44 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=62.7
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
+||++++|.= |.. .+ ..+.+.+.++.++.++|++|..||....|...+ .+.++.+.+. ++-
T Consensus 1 m~ilfiGDi~--G~~----Gr----~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~----~~~~~~L~~~-----GvD 61 (266)
T TIGR00282 1 IKFLFIGDVY--GKA----GR----KIVKNNLPQLKSKYQADLVIANGENTTHGKGLT----LKIYEFLKQS-----GVN 61 (266)
T ss_pred CeEEEEEecC--CHH----HH----HHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC----HHHHHHHHhc-----CCC
Confidence 5899999963 321 01 123333445556778999999999997664333 2334445443 677
Q ss_pred EEEecCCCCCCCCCCCChhHHHHHHhhCCCCCC------CCCceEEECCEEEEEeccc
Q 016783 133 FHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDS------SGCGAFEISNISFLSLNAV 184 (383)
Q Consensus 133 ~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~------~~~~~~~~~~v~fi~Lds~ 184 (383)
++.+ |||.+...... ..++...+.+.+.++ ..+..++.+|..+-++|-+
T Consensus 62 viT~-GNH~~Dkge~~--~~i~~~~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~ 116 (266)
T TIGR00282 62 YITM-GNHTWFQKLIL--DVVINQKDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQ 116 (266)
T ss_pred EEEc-cchhccCcHHH--HHHhccccccccCCCCCCCCCCCcEEEEECCEEEEEEECC
Confidence 7777 99999654210 011111222222221 2345677888887777754
No 103
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.69 E-value=0.086 Score=57.07 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=42.6
Q ss_pred ceEEEEEecCCCCCCCCCccc-cc---chHHHHHHHHHHHHhhCCCC-EEEEcCCCCCCCCCCChhc-----HHHHHHHH
Q 016783 52 DLKVMMVANLLLVGSDSGFVD-RH---FRDYYMAKFFRKSFHTLNPD-MLLVLGDVSAKGSELTRSD-----WLPVLDRF 121 (383)
Q Consensus 52 ~~~i~~isD~hl~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~PD-~vi~~GDl~d~~~~~~~~~-----~~~~~~~~ 121 (383)
.++|++.+|+|-.-....+.. +- .--..+. .+.+.+....|. +++-.||++++....+... ......-.
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlA-tlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~ 193 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTA-VLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM 193 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHH-HHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence 689999999997522111111 00 0001111 122223334455 4577999998754322100 00000012
Q ss_pred HHhhcCCCCCcEEEecCCCCCCCCC
Q 016783 122 HQMLGTFLGVPFHVLLGDRDVGECS 146 (383)
Q Consensus 122 ~~i~~~~~~~p~~~v~GNHD~~~~~ 146 (383)
.+++.. .+ -=...+||||+.++.
T Consensus 194 i~amN~-LG-yDA~tLGNHEFDyG~ 216 (814)
T PRK11907 194 YAALEA-LG-FDAGTLGNHEFNYGL 216 (814)
T ss_pred HHHHhc-cC-CCEEEechhhcccCH
Confidence 222221 02 226789999997653
No 104
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.64 E-value=0.68 Score=50.12 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHc-CCceEEeccCCCCceeecCCCceEEEecceeccCCCCCcEEEEEEeCC
Q 016783 288 FQAL-KPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKARDDPGFVIANFHGN 339 (383)
Q Consensus 288 l~~~-~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g~~pgy~ll~i~~~ 339 (383)
+++. ++|+|++||.|....... +++..+..+ ..|..=|..-|+++.+
T Consensus 272 l~~v~gID~IlgGHsH~~~~~~i-ngv~vvqaG----~~G~~LG~IdL~ld~~ 319 (780)
T PRK09418 272 LTEVPGVDAVLMGHSHTEVKDVF-NGVPVVMPG----VFGSNLGIIDMQLKKV 319 (780)
T ss_pred HhcCCCCCEEEECCCCCcccccC-CCEEEEEcC----hhhcEEEEEEEEEECC
Confidence 3444 799999999999764322 233322222 2222336666666643
No 105
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.63 E-value=0.077 Score=56.15 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=14.5
Q ss_pred HHHc-CCceEEeccCCCCc
Q 016783 288 FQAL-KPKIIFSAHAHEFC 305 (383)
Q Consensus 288 l~~~-~v~lvfsGH~H~~~ 305 (383)
|.+. ++|+|++||.|...
T Consensus 223 l~~v~gID~Il~GHsH~~~ 241 (626)
T TIGR01390 223 LTKVPGIDAVLFGHSHAVF 241 (626)
T ss_pred HhcCCCCCEEEcCCCCccC
Confidence 3443 79999999999975
No 106
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.58 E-value=0.28 Score=46.33 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHcCCceEEeccCCCCc--eeecCCCceEEEecceeccCC-CCCcEEEEEEeCCC
Q 016783 280 PLNATEYIFQALKPKIIFSAHAHEFC--DYTHSDGTREVTVSAMTWKAR-DDPGFVIANFHGNG 340 (383)
Q Consensus 280 ~~e~~~~ll~~~~v~lvfsGH~H~~~--~~~~~~~~~eitv~S~s~~~g-~~pgy~ll~i~~~~ 340 (383)
.++++...|++.+.++|+-||.=... ...++ -.-+|+=|.+-..| ..+.-+++.++.+.
T Consensus 199 g~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~--~~~~TvfSa~~y~~~~~n~~a~~~i~~~~ 260 (271)
T smart00156 199 GPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHD--RKLVTIFSAPNYCGRFGNKAAVLKVDKDL 260 (271)
T ss_pred CHHHHHHHHHHCCCeEEEecCcccCCcEEEecC--CcEEEEECCcccccCCCceEEEEEECCCC
Confidence 57789999999999999999963322 22232 34455555443333 12333566666654
No 107
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=96.53 E-value=0.13 Score=49.58 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC--CCCcEEEEEEeC
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR--DDPGFVIANFHG 338 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g--~~pgy~ll~i~~ 338 (383)
..++++.+.|++.+.++|+-||.=....+....+-.-+|+=|.+-..| ++.| +++.++.
T Consensus 231 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~g-a~~~i~~ 291 (316)
T cd07417 231 FGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKG-AFIRITG 291 (316)
T ss_pred eCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcce-EEEEEeC
Confidence 367889999999999999999986543332211234566666554433 2222 4555555
No 108
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.35 E-value=0.1 Score=55.36 Aligned_cols=89 Identities=19% Similarity=0.101 Sum_probs=42.6
Q ss_pred CCceEEEEEecCCCCCCCCCccc-cc---chHHHHHHHHHHHHhhCCCC-EEEEcCCCCCCCCCCChhcHH--------H
Q 016783 50 GVDLKVMMVANLLLVGSDSGFVD-RH---FRDYYMAKFFRKSFHTLNPD-MLLVLGDVSAKGSELTRSDWL--------P 116 (383)
Q Consensus 50 ~~~~~i~~isD~hl~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~PD-~vi~~GDl~d~~~~~~~~~~~--------~ 116 (383)
...++|++.+|+|-.-....+.. +- .--..+. ++.+...+..|. +++-.||+++.....+...+. .
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~a-tli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p 101 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTA-SLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHP 101 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHH-HHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcch
Confidence 34799999999996421111110 00 0001111 122223334455 456799999865432110000 1
Q ss_pred HHHHHHHhhcCCCCCcEEEecCCCCCCCC
Q 016783 117 VLDRFHQMLGTFLGVPFHVLLGDRDVGEC 145 (383)
Q Consensus 117 ~~~~~~~i~~~~~~~p~~~v~GNHD~~~~ 145 (383)
.++ +.+.+ + -=...+||||+.++
T Consensus 102 ~i~-amN~l----g-yDa~tlGNHEFd~G 124 (649)
T PRK09420 102 VYK-AMNTL----D-YDVGNLGNHEFNYG 124 (649)
T ss_pred HHH-HHHhc----C-CcEEeccchhhhcC
Confidence 122 22222 1 23678999999764
No 109
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.59 Score=39.58 Aligned_cols=58 Identities=21% Similarity=0.381 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecce----eccCC--CCCcEEEEEEeCCC
Q 016783 282 NATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAM----TWKAR--DDPGFVIANFHGNG 340 (383)
Q Consensus 282 e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~----s~~~g--~~pgy~ll~i~~~~ 340 (383)
+.+.-|-++..+++.++||+|....+.+++ --.++-+|+ ++-.- ..|+|.++.+.++.
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~Aye~eg-~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~ 160 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEAYEHEG-KFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGST 160 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEEEEeCC-cEEeCCCcccCCCcccccCCCCCceEEEEecCCE
Confidence 345556667899999999999999888864 444444443 22111 35899999998875
No 110
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.81 E-value=0.75 Score=43.97 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC--CCCcEEEEEEeCCC
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR--DDPGFVIANFHGNG 340 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g--~~pgy~ll~i~~~~ 340 (383)
..++++.+.+++.+.++++-||.=....+....+-.-+|+=|.+-..| ++.| +++.++.+.
T Consensus 222 fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~-a~l~i~~~~ 284 (294)
T PTZ00244 222 FGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDA-AVMNIDDKL 284 (294)
T ss_pred cCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceE-EEEEECCCC
Confidence 467889999999999999999976543333222345566666554333 2223 555666544
No 111
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=95.75 E-value=0.019 Score=55.46 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC--CCCcEEEEEEeCCC
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR--DDPGFVIANFHGNG 340 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g--~~pgy~ll~i~~~~ 340 (383)
..++++.+.|++.+.++|+-||.=....+....+-.-+|+=|.+-..| ++.| +++.++.+.
T Consensus 251 FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~g-avl~i~~~~ 313 (321)
T cd07420 251 FGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRG-AYIKLGPDL 313 (321)
T ss_pred cCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccE-EEEEECCCC
Confidence 467889999999999999999975433332211234556655553333 2222 445555543
No 112
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=95.74 E-value=0.24 Score=46.15 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcC
Q 016783 48 GSGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGT 127 (383)
Q Consensus 48 ~~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~ 127 (383)
...+-.|++-+||+|=.... . ..-..-|+.+.+||.+.-|.. +++..|++.+..
T Consensus 57 ~~~~~~r~VcisdtH~~~~~----------------i---~~~p~gDvlihagdfT~~g~~-------~ev~~fn~~~gs 110 (305)
T KOG3947|consen 57 VGPGYARFVCISDTHELTFD----------------I---NDIPDGDVLIHAGDFTNLGLP-------EEVIKFNEWLGS 110 (305)
T ss_pred CCCCceEEEEecCcccccCc----------------c---ccCCCCceEEeccCCccccCH-------HHHHhhhHHhcc
Confidence 45678999999999974322 0 013456899999999987653 335556665543
Q ss_pred CCCCcEEEecCCCCCCCCCC
Q 016783 128 FLGVPFHVLLGDRDVGECSG 147 (383)
Q Consensus 128 ~~~~p~~~v~GNHD~~~~~~ 147 (383)
....-.++|.|||++++..+
T Consensus 111 lph~yKIVIaGNHELtFd~e 130 (305)
T KOG3947|consen 111 LPHEYKIVIAGNHELTFDHE 130 (305)
T ss_pred CcceeeEEEeeccceeeccc
Confidence 33345799999999987643
No 113
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.65 E-value=1.1 Score=43.22 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC--CCCcEEEEEEeCCC
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR--DDPGFVIANFHGNG 340 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g--~~pgy~ll~i~~~~ 340 (383)
..++++.+.|++.+.++|+-||.=....+....+-.-+|+=|.+-..| ++.| +++.++.+.
T Consensus 229 FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~g-a~l~i~~~~ 291 (320)
T PTZ00480 229 FSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAG-SMMTIDESL 291 (320)
T ss_pred cCHHHHHHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccE-EEEEECCCC
Confidence 468889999999999999999975543332212234466666654444 2233 556666654
No 114
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=95.40 E-value=0.025 Score=54.31 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCce
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCD 306 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~ 306 (383)
|....+.+||+..+|..-||+|.|.-..
T Consensus 205 LGSp~~~eLL~~LkP~yWfsAHLH~KFa 232 (456)
T KOG2863|consen 205 LGSPALEELLEDLKPQYWFSAHLHVKFA 232 (456)
T ss_pred cCChHHHHHHHHhCcchhhhhhHhhHHh
Confidence 4445788999999999999999998653
No 115
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=95.19 E-value=0.12 Score=48.27 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=88.7
Q ss_pred CCEEEEcCCCCCCCCCCC--hhcHHHHHHHHHHhhcC-----CCCCcEEEecCCCCCCCCCCCChhHHHHHHhhC-----
Q 016783 93 PDMLLVLGDVSAKGSELT--RSDWLPVLDRFHQMLGT-----FLGVPFHVLLGDRDVGECSGLDTGSVDWIAGNF----- 160 (383)
Q Consensus 93 PD~vi~~GDl~d~~~~~~--~~~~~~~~~~~~~i~~~-----~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~f----- 160 (383)
|=-+|.-||++|++.... +.| -..++.|....+. .-.+|+|+=.||||..-... +...+.|++..
T Consensus 127 plGlV~ggDitddgggq~~qprE-g~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gp--ph~~DWyRrElrdyve 203 (392)
T COG5555 127 PLGLVEGGDITDDGGGQSFQPRE-GNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGP--PHSLDWYRRELRDYVE 203 (392)
T ss_pred ceeEEeecceeccCCCcccCccc-cchhhchHhhhccCCCCceeeeeeEeccCchhhcccCC--CCchhHHHHHHHHHHH
Confidence 344678899999764321 111 1123334433332 12479999999999843322 22233333211
Q ss_pred ---------CCC----C---CCCCceEEECCEEEEEecccccccCCCccccchHHHHhHhhHHHHHhhcccccccccccc
Q 016783 161 ---------PGL----D---SSGCGAFEISNISFLSLNAVALLCGNNKLRFSVEKVIETESIDLRMEAKGSAEAVHDFSN 224 (383)
Q Consensus 161 ---------~~~----~---~~~~~~~~~~~v~fi~Lds~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 224 (383)
.++ + ....|++++++++.+-.-. +.++...... ..+.|++.++.-
T Consensus 204 ~~Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hr--f~Gd~~~ga~---sslpwlk~dl~~-------------- 264 (392)
T COG5555 204 NYHRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHR--FIGDAEPGAN---SSLPWLKVDLIY-------------- 264 (392)
T ss_pred hhcCcCcccCCCCCcccccccchheeccccceeEEEEee--eccccCCCcc---ccCcceecccee--------------
Confidence 111 1 1345788999998776543 3333322110 012343333210
Q ss_pred chhhhhccCCCCCCEEEeeccCccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHHHHHHHHcCCceEEeccCCCC
Q 016783 225 FAWREKAMSSKSGPVLLLHFPLHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNATEYIFQALKPKIIFSAHAHEF 304 (383)
Q Consensus 225 ~~~~~~~~~~~~~~Il~~H~Pl~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~~~ll~~~~v~lvfsGH~H~~ 304 (383)
.+.+..+.+||.|+-.-.-+.+..++ .+..-+. .+.|.=..|..-.+.+....++.+++.-+|+||-|+.
T Consensus 265 ------~aadgrpv~LfqhyGwdtfsteawdp--AsrT~Dd--~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~ 334 (392)
T COG5555 265 ------SAADGRPVYLFQHYGWDTFSTEAWDP--ASRTLDD--TGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDF 334 (392)
T ss_pred ------eccCCCceeehhhhCccceeccccCc--hhccccc--CCCCCCCCCCCCCcchHHHhhcCceeEEecccccccc
Confidence 13455666899998544322211111 1100000 0111001122222334556678889999999999997
Q ss_pred ce
Q 016783 305 CD 306 (383)
Q Consensus 305 ~~ 306 (383)
-.
T Consensus 335 ~m 336 (392)
T COG5555 335 NM 336 (392)
T ss_pred ce
Confidence 43
No 116
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=95.09 E-value=0.093 Score=47.89 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=54.8
Q ss_pred hhCCCCEEEEcCCCCCCCC-------------------CCChhcHHHHHHHHHHhhc------CCCCCcEEEecCCCCCC
Q 016783 89 HTLNPDMLLVLGDVSAKGS-------------------ELTRSDWLPVLDRFHQMLG------TFLGVPFHVLLGDRDVG 143 (383)
Q Consensus 89 ~~~~PD~vi~~GDl~d~~~-------------------~~~~~~~~~~~~~~~~i~~------~~~~~p~~~v~GNHD~~ 143 (383)
...+||+++++||.+.... ..+.+++.+.+ ...+. ....+|++.+.-+||++
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y---~~~~~~p~~~~~~~~~p~~~iwDDHDi~ 102 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERY---RQYRSDPDLQRLLAQVPTIGIWDDHDIG 102 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHH---HHHcCCHHHHHHhhcCCEEEeccccccc
Confidence 4779999999999876432 11222222222 22211 12368999999999995
Q ss_pred CCCCC---------C-----hhHHHHHHhhCCCCC--------CCCCceEEECCE-EEEEecccc
Q 016783 144 ECSGL---------D-----TGSVDWIAGNFPGLD--------SSGCGAFEISNI-SFLSLNAVA 185 (383)
Q Consensus 144 ~~~~~---------~-----~~~~~~f~~~f~~~~--------~~~~~~~~~~~v-~fi~Lds~~ 185 (383)
..... . ....+.|.++.+..+ ...++++.+|.. .|++||+-.
T Consensus 103 ~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~~~lD~R~ 167 (228)
T cd07389 103 DNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDLILLDTRT 167 (228)
T ss_pred cccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceEEEEeccc
Confidence 43321 0 012344555443221 124567888887 999998764
No 117
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=94.89 E-value=0.15 Score=48.10 Aligned_cols=88 Identities=8% Similarity=0.075 Sum_probs=52.8
Q ss_pred CCCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHh----hCCCCEEEEcCCCCCCCC---CCChhcHHHHHHHH
Q 016783 49 SGVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFH----TLNPDMLLVLGDVSAKGS---ELTRSDWLPVLDRF 121 (383)
Q Consensus 49 ~~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~PD~vi~~GDl~d~~~---~~~~~~~~~~~~~~ 121 (383)
+....+++++||.||-... .-..+++.|...-+ ...|-++|++|+++...- ....+.+++..+.|
T Consensus 24 ~~~~~~~VilSDV~LD~p~--------tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~L 95 (291)
T PTZ00235 24 NDKRHNWIIMHDVYLDSPY--------TFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKL 95 (291)
T ss_pred CCCceEEEEEEeeccCCHH--------HHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHH
Confidence 5678899999999994321 11123333332212 234999999999986531 11223355555566
Q ss_pred HH-hhcC----CCCCcEEEecCCCCCCC
Q 016783 122 HQ-MLGT----FLGVPFHVLLGDRDVGE 144 (383)
Q Consensus 122 ~~-i~~~----~~~~p~~~v~GNHD~~~ 144 (383)
.. +++. ..+..++.|||-+|.+.
T Consensus 96 a~llls~fp~L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 96 SVMLISKFKLILEHCYLIFIPGINDPCA 123 (291)
T ss_pred HHHHHHhChHHHhcCeEEEECCCCCCCc
Confidence 55 2331 22568999999999854
No 118
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=94.82 E-value=0.056 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHcCCceEEeccC
Q 016783 279 VPLNATEYIFQALKPKIIFSAHA 301 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~ 301 (383)
..++++...|++.+.++|+-||-
T Consensus 271 FG~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 271 WGPDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred cCHHHHHHHHHHcCCcEEEECCC
Confidence 46888999999999999999998
No 119
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=94.78 E-value=0.064 Score=51.57 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCcee--ecCCC----ceEEEecceeccCC--CCCcEEEEEEeCCCce-----EEE
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCDY--THSDG----TREVTVSAMTWKAR--DDPGFVIANFHGNGRG-----VSV 345 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~~--~~~~~----~~eitv~S~s~~~g--~~pgy~ll~i~~~~~~-----~~~ 345 (383)
..++++.+.|++.+.++|+-||.=....+ .+.++ -.-+|+=|.+-..| ++.| +++.++++..+ ...
T Consensus 220 fG~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~-a~l~i~~~~~~~~~~~~~~ 298 (305)
T cd07416 220 YSYRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKA-AVLKYENNVMNIRQFNCSP 298 (305)
T ss_pred cCHHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceE-EEEEEcCCcceEEEecCCC
Confidence 36788999999999999999997543322 23211 14566666554333 2222 44555555311 234
Q ss_pred eEeeccc
Q 016783 346 SYCSLAR 352 (383)
Q Consensus 346 ~~c~lp~ 352 (383)
++||||+
T Consensus 299 ~~~~~~~ 305 (305)
T cd07416 299 HPYWLPN 305 (305)
T ss_pred CCCCCCC
Confidence 5677764
No 120
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=94.68 E-value=0.045 Score=52.27 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCCC-CCcEEEEEEeCCCceEEEe
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKARD-DPGFVIANFHGNGRGVSVS 346 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g~-~pgy~ll~i~~~~~~~~~~ 346 (383)
..++++.+.|++.+.++++-||.=....+....+-.-+|+=|.+-..|. .+.=+++.++.+. .+++.
T Consensus 220 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~-~~~~~ 287 (293)
T cd07414 220 FGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETL-MCSFQ 287 (293)
T ss_pred cCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCC-cEEEE
Confidence 3678899999999999999999866443332223345666555544441 2212445555554 34444
No 121
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=94.11 E-value=0.097 Score=49.83 Aligned_cols=60 Identities=15% Similarity=0.029 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC---CCCcEEEEEEeCCC
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR---DDPGFVIANFHGNG 340 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g---~~pgy~ll~i~~~~ 340 (383)
..++++.+.|++.+.++++-||.=....+....+-.-+|+=|.+-..+ +..+ ++.++.+.
T Consensus 212 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a--~l~i~~~~ 274 (285)
T cd07415 212 FGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVAS--IMELDEHL 274 (285)
T ss_pred cCHHHHHHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEE--EEEECCCC
Confidence 467889999999999999999985543332211234456555443332 3333 44455544
No 122
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=93.93 E-value=0.085 Score=50.62 Aligned_cols=61 Identities=16% Similarity=0.015 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCceee--cCCCceEEEecceeccCCC-CCcEEEEEEeCCC
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCDYT--HSDGTREVTVSAMTWKARD-DPGFVIANFHGNG 340 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~--~~~~~~eitv~S~s~~~g~-~pgy~ll~i~~~~ 340 (383)
..++++...|++.+.++|+-||-=....+. +. +-.-+|+=|.+-..+. .+.=+++.++.+.
T Consensus 213 fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~-~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~ 276 (303)
T PTZ00239 213 FGAKVTKEFCRLNDLTLICRAHQLVMEGYKYWFP-DQNLVTVWSAPNYCYRCGNIASILCLDENL 276 (303)
T ss_pred cCHHHHHHHHHHCCCcEEEEcChhhccceEEEeC-CCeEEEEECCCcccCCCCceEEEEEECCCC
Confidence 467889999999999999999975543332 22 2234555554432221 1212455555543
No 123
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=93.53 E-value=0.17 Score=48.75 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHcCCceEEeccCC--CCceeecCCCceEEEecceeccCC-CCCcEEEEEEeCCC
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAH--EFCDYTHSDGTREVTVSAMTWKAR-DDPGFVIANFHGNG 340 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H--~~~~~~~~~~~~eitv~S~s~~~g-~~pgy~ll~i~~~~ 340 (383)
..+++....+++.+.++++-||.= ......+. -.-+|+=|.+-..| ..+.=+++.++.+.
T Consensus 240 fg~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~--~~~iTvfSa~~y~~~~~n~~ai~~i~~~~ 302 (311)
T cd07419 240 FGPDRVHRFLEENDLQMIIRAHECVMDGFERFAQ--GKLITLFSATNYCGTAGNAGAILVLGRDL 302 (311)
T ss_pred ECHHHHHHHHHHCCCeEEEEechhhhCCeEEeCC--CeEEEEecCCcccCCCCceEEEEEECCCC
Confidence 367889999999999999999972 22223332 34456555443333 12223455555543
No 124
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=93.02 E-value=3.6 Score=39.98 Aligned_cols=68 Identities=18% Similarity=0.067 Sum_probs=43.1
Q ss_pred cCChHHHHHHHHHcCCceEEeccCCCCceeecCCCceEEEecceeccCC-CCCcEEEEEEeCCCceEEEe
Q 016783 278 AVPLNATEYIFQALKPKIIFSAHAHEFCDYTHSDGTREVTVSAMTWKAR-DDPGFVIANFHGNGRGVSVS 346 (383)
Q Consensus 278 ~l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g-~~pgy~ll~i~~~~~~~~~~ 346 (383)
+..++...+++++.+.++|.-||-=....+.+-.+.+-+|+=|.-...| ..+..+++.++.+. .+++.
T Consensus 230 ~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l-~~sf~ 298 (331)
T KOG0374|consen 230 TFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNL-KCSFV 298 (331)
T ss_pred EecHHHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCC-eEEEE
Confidence 3467788999999999999999965544443223344455554433344 24456788887765 34444
No 125
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=91.35 E-value=2.9 Score=42.09 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHcCCc--eEEeccCCCCc
Q 016783 279 VPLNATEYIFQALKPK--IIFSAHAHEFC 305 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~--lvfsGH~H~~~ 305 (383)
..+|.+..+++..++. ++|+|++|...
T Consensus 391 ~~RerLl~fi~~~~~~N~V~LtgDvH~~w 419 (522)
T COG3540 391 AGRERLLRFIADRKIRNTVVLTGDVHYSW 419 (522)
T ss_pred ccHHHHHHHHHhcCCCCcEEEechhHHHH
Confidence 3566777778777775 79999999865
No 126
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=86.77 E-value=19 Score=32.89 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=13.9
Q ss_pred cCCceEEeccCCCCce
Q 016783 291 LKPKIIFSAHAHEFCD 306 (383)
Q Consensus 291 ~~v~lvfsGH~H~~~~ 306 (383)
.++++|+.||.|....
T Consensus 206 ~G~D~IiG~H~Hv~q~ 221 (239)
T cd07381 206 AGADLVIGHHPHVLQG 221 (239)
T ss_pred CCCCEEEcCCCCcCCC
Confidence 5899999999998754
No 127
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=85.49 E-value=0.94 Score=47.04 Aligned_cols=53 Identities=19% Similarity=0.423 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCC
Q 016783 79 YMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDV 142 (383)
Q Consensus 79 ~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~ 142 (383)
....++..+++++-.|-+=+.||++|+|..+. ...+++.+ .. -+=.--||||+
T Consensus 171 ~fI~al~~lIqrL~VDhLHIvGDIyDRGp~pd-----~ImD~Lm~----~h--svDIQWGNHDI 223 (640)
T PF06874_consen 171 EFIIALSELIQRLAVDHLHIVGDIYDRGPRPD-----KIMDRLMN----YH--SVDIQWGNHDI 223 (640)
T ss_pred HHHHHHHHHHHHHhhhheeecccccCCCCChh-----HHHHHHhc----CC--CccccccchHH
Confidence 34455677788999999999999999997521 22233332 11 23445699998
No 128
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=82.36 E-value=25 Score=32.21 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=16.3
Q ss_pred HHHHHHHcCCceEEeccCCCCce
Q 016783 284 TEYIFQALKPKIIFSAHAHEFCD 306 (383)
Q Consensus 284 ~~~ll~~~~v~lvfsGH~H~~~~ 306 (383)
...+.+ .++++|++||.|....
T Consensus 198 A~~l~~-~G~DvIiG~H~H~~~~ 219 (239)
T smart00854 198 AHALID-AGADVVIGHHPHVLQP 219 (239)
T ss_pred HHHHHH-cCCCEEEcCCCCcCCc
Confidence 344444 4899999999998753
No 129
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.28 E-value=2.1 Score=35.25 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=22.1
Q ss_pred eeccccchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 016783 348 CSLARESQLLIAYGFVLISLSSIMLVANITQLRR 381 (383)
Q Consensus 348 c~lp~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 381 (383)
.-++..-..+++++|++.+..+|+|++...+|||
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777788889877777777776555444443
No 130
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=78.99 E-value=2.8 Score=37.98 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=39.0
Q ss_pred EEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCE-EEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcE
Q 016783 55 VMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDM-LLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPF 133 (383)
Q Consensus 55 i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~-vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~ 133 (383)
+-+.+|+|-. +. .+.+.|+. .-.-||. -||+||.+|.|..+ - +....+.-+..+. .-.+
T Consensus 48 VTvCGDIHGQ-----Fy-------DL~eLFrt--gG~vP~tnYiFmGDfVDRGyyS-L----EtfT~l~~Lkary-P~~I 107 (306)
T KOG0373|consen 48 VTVCGDIHGQ-----FY-------DLLELFRT--GGQVPDTNYIFMGDFVDRGYYS-L----ETFTLLLLLKARY-PAKI 107 (306)
T ss_pred eeEeeccchh-----HH-------HHHHHHHh--cCCCCCcceEEecccccccccc-H----HHHHHHHHHhhcC-Ccee
Confidence 4567888862 11 13333432 2334666 58999999999642 1 2223333332222 2368
Q ss_pred EEecCCCCC
Q 016783 134 HVLLGDRDV 142 (383)
Q Consensus 134 ~~v~GNHD~ 142 (383)
-.+.|||+-
T Consensus 108 TLlRGNHEs 116 (306)
T KOG0373|consen 108 TLLRGNHES 116 (306)
T ss_pred EEeeccchh
Confidence 889999995
No 131
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=75.45 E-value=18 Score=36.27 Aligned_cols=84 Identities=13% Similarity=0.219 Sum_probs=53.6
Q ss_pred CceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHH---hhCCCCEEEEcCCCCCCCCCC-ChhcHHHHHHHHHHhhc
Q 016783 51 VDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSF---HTLNPDMLLVLGDVSAKGSEL-TRSDWLPVLDRFHQMLG 126 (383)
Q Consensus 51 ~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~PD~vi~~GDl~d~~~~~-~~~~~~~~~~~~~~i~~ 126 (383)
....++++||.+|.. . .+.+++.++. +...|-.+|++|-++...... +-.++++....+...+.
T Consensus 281 ~d~~fVfLSdV~LD~-~-----------~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~ 348 (525)
T KOG3818|consen 281 TDTSFVFLSDVFLDD-K-----------KVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLT 348 (525)
T ss_pred cCceEEEEehhcccc-H-----------HHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhcc
Confidence 356789999999932 1 1223333333 456688999999998654322 23445555555555543
Q ss_pred C----CCCCcEEEecCCCCCCCCC
Q 016783 127 T----FLGVPFHVLLGDRDVGECS 146 (383)
Q Consensus 127 ~----~~~~p~~~v~GNHD~~~~~ 146 (383)
. ..+..++.|||-.|-+..+
T Consensus 349 ~~~~~~ekT~fIFVPGP~Dp~~~~ 372 (525)
T KOG3818|consen 349 CFRKDYEKTQFIFVPGPNDPWVDN 372 (525)
T ss_pred ccccccccceEEEecCCCCCCcCc
Confidence 2 1346899999999997766
No 132
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=75.33 E-value=3.6 Score=41.20 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhCCCCEEEEcCCCCCCCCC
Q 016783 79 YMAKFFRKSFHTLNPDMLLVLGDVSAKGSE 108 (383)
Q Consensus 79 ~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~ 108 (383)
.+.-++...++++..|.+=+.||+.|.|..
T Consensus 177 e~I~ala~~iqrLvVDhLHiVGDIyDRGP~ 206 (648)
T COG3855 177 EFIIALAYLIQRLVVDHLHIVGDIYDRGPY 206 (648)
T ss_pred HHHHHHHHHHHHHhhhheeeecccccCCCC
Confidence 344455666788999999999999999975
No 133
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=67.43 E-value=4.3 Score=37.47 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHcCCceEEeccCCCCceeec--CCC-ceEEEecceeccCCCCCcEEEEEEeCC
Q 016783 279 VPLNATEYIFQALKPKIIFSAHAHEFCDYTH--SDG-TREVTVSAMTWKARDDPGFVIANFHGN 339 (383)
Q Consensus 279 l~~e~~~~ll~~~~v~lvfsGH~H~~~~~~~--~~~-~~eitv~S~s~~~g~~pgy~ll~i~~~ 339 (383)
..++.....++..+...|.-.|-=....+.. ++. ++-.++|.-++|-|+.-+ ++.++.+
T Consensus 213 FG~dvv~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~As--Il~lde~ 274 (303)
T KOG0372|consen 213 FGEDVVESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAA--ILELDED 274 (303)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHH--heeeccc
Confidence 3566778888887777776666433332221 111 344466666777664333 4444443
No 134
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=63.94 E-value=5.8 Score=34.30 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=12.9
Q ss_pred CCceEEeccCCCCce
Q 016783 292 KPKIIFSAHAHEFCD 306 (383)
Q Consensus 292 ~v~lvfsGH~H~~~~ 306 (383)
+.+++++||+|....
T Consensus 125 ~~d~vi~GHtH~~~~ 139 (168)
T cd07390 125 RGSWNLHGHIHSNSP 139 (168)
T ss_pred CCeEEEEeeeCCCCC
Confidence 568999999999874
No 135
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=60.88 E-value=50 Score=30.65 Aligned_cols=111 Identities=14% Similarity=0.253 Sum_probs=62.5
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
+|+++++|.= |+.. +. .+...+-....+.++|+||.-|--.-.|.-.+.+- ++.+.+. ++-
T Consensus 1 mriLfiGDvv--Gk~G----r~----~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~----y~~l~~~-----G~d 61 (266)
T COG1692 1 MRILFIGDVV--GKPG----RK----AVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKI----YKELLEA-----GAD 61 (266)
T ss_pred CeEEEEeccc--Ccch----HH----HHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHH----HHHHHHh-----CCC
Confidence 5899999962 3221 11 12222334445789999999999888777655433 3334332 333
Q ss_pred EEEecCCCCCCCCCCCChhHHHHHHhhCCCCCC------CCCceEEECCEEEEEecccc
Q 016783 133 FHVLLGDRDVGECSGLDTGSVDWIAGNFPGLDS------SGCGAFEISNISFLSLNAVA 185 (383)
Q Consensus 133 ~~~v~GNHD~~~~~~~~~~~~~~f~~~f~~~~~------~~~~~~~~~~v~fi~Lds~~ 185 (383)
+...|||=+.-... . ..+.+......|.|+ ..+..|..+|..+.+.|=+-
T Consensus 62 -viT~GNH~wd~~ei-~-~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~G 117 (266)
T COG1692 62 -VITLGNHTWDQKEI-L-DFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMG 117 (266)
T ss_pred -EEecccccccchHH-H-HHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeec
Confidence 45689998743210 0 012222222233332 24567888898888887654
No 136
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=58.42 E-value=10 Score=35.28 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=39.6
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCE-EEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCc
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDM-LLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVP 132 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~-vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p 132 (383)
-+.+.+|.|-.-. .+.+.| .+.-..||. -+|+||.+|.|..+ . +.+..+...--+. .-.
T Consensus 61 pvtvcGDvHGqf~------------dl~ELf--kiGG~~pdtnylfmGDyvdrGy~S-v----etVS~lva~Kvry-~~r 120 (319)
T KOG0371|consen 61 PVTVCGDVHGQFH------------DLIELF--KIGGLAPDTNYLFMGDYVDRGYYS-V----ETVSLLVALKVRY-PDR 120 (319)
T ss_pred ceEEecCcchhHH------------HHHHHH--HccCCCCCcceeeeeeecccccch-H----HHHHHHHHhhccc-cce
Confidence 3688899886210 122222 245667887 48999999998642 1 1122222211011 126
Q ss_pred EEEecCCCCC
Q 016783 133 FHVLLGDRDV 142 (383)
Q Consensus 133 ~~~v~GNHD~ 142 (383)
+..+.|||+.
T Consensus 121 vtilrGNHEs 130 (319)
T KOG0371|consen 121 VTILRGNHES 130 (319)
T ss_pred eEEecCchHH
Confidence 8999999996
No 137
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=57.69 E-value=13 Score=33.43 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCceEEeccCCCCcee
Q 016783 283 ATEYIFQALKPKIIFSAHAHEFCDY 307 (383)
Q Consensus 283 ~~~~ll~~~~v~lvfsGH~H~~~~~ 307 (383)
....+|+.++.++++.||+|.....
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~~ 182 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGGI 182 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecCc
Confidence 3567888899999999999997643
No 138
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=55.52 E-value=85 Score=29.30 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCCCCCCCCChhHHHHHHhh
Q 016783 80 MAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDVGECSGLDTGSVDWIAGN 159 (383)
Q Consensus 80 l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~f~~~ 159 (383)
+.+.+..+.++.++|+||.-|.-.-.|.-.+.+. +++|.+. ++- ....|||=+.... +. ..++...+.
T Consensus 15 v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~----~~~L~~~-----GvD-viT~GNH~wdkke-i~-~~i~~~~~i 82 (253)
T PF13277_consen 15 VKEHLPELKEEYGIDFVIANGENAAGGFGITPKI----AEELFKA-----GVD-VITMGNHIWDKKE-IF-DFIDKEPRI 82 (253)
T ss_dssp HHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHH----HHHHHHH-----T-S-EEE--TTTTSSTT-HH-HHHHH-SSE
T ss_pred HHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHH----HHHHHhc-----CCC-EEecCcccccCcH-HH-HHHhcCCCc
Confidence 3444555567889999999999988777665443 3334433 333 4568999885422 00 112222222
Q ss_pred CCCCCC------CCCceEEECCEEEEEecccc
Q 016783 160 FPGLDS------SGCGAFEISNISFLSLNAVA 185 (383)
Q Consensus 160 f~~~~~------~~~~~~~~~~v~fi~Lds~~ 185 (383)
..|.|+ ..+..++.+|..+-++|-+-
T Consensus 83 lRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~G 114 (253)
T PF13277_consen 83 LRPANYPPGTPGRGYRIFEKNGKKVAVINLMG 114 (253)
T ss_dssp E--TTS-TT-SSBSEEEEEETTEEEEEEEEE-
T ss_pred EECCCCCCCCCcCcEEEEEECCEEEEEEECcc
Confidence 333332 24567888999999998764
No 139
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.80 E-value=17 Score=36.61 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=41.3
Q ss_pred eEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhC-CCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCC
Q 016783 53 LKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTL-NPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGV 131 (383)
Q Consensus 53 ~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (383)
.||++++|.-- .++ ++.+.+.++.++. ..|+++..|++++.. ..+++|.++..-..++ .+
T Consensus 6 ~kILv~Gd~~G------r~~------eli~rI~~v~Kk~GpFd~liCvGnfF~~~--~~~~e~~~ykng~~~v-----Pi 66 (528)
T KOG2476|consen 6 AKILVCGDVEG------RFD------ELIKRIQKVNKKSGPFDLLICVGNFFGHD--TQNAEVEKYKNGTKKV-----PI 66 (528)
T ss_pred ceEEEEcCccc------cHH------HHHHHHHHHhhcCCCceEEEEecccCCCc--cchhHHHHHhcCCccC-----ce
Confidence 58899888632 111 1222233433333 479999999999852 2345555554433332 57
Q ss_pred cEEEecCCCC
Q 016783 132 PFHVLLGDRD 141 (383)
Q Consensus 132 p~~~v~GNHD 141 (383)
|+|+.-+|--
T Consensus 67 ptY~~g~~~~ 76 (528)
T KOG2476|consen 67 PTYFLGDNAN 76 (528)
T ss_pred eEEEecCCCC
Confidence 8888877764
No 140
>PHA02909 hypothetical protein; Provisional
Probab=54.08 E-value=73 Score=22.25 Aligned_cols=14 Identities=36% Similarity=0.918 Sum_probs=11.2
Q ss_pred CCCcEEEEEEe-CCC
Q 016783 327 DDPGFVIANFH-GNG 340 (383)
Q Consensus 327 ~~pgy~ll~i~-~~~ 340 (383)
+.|.|.+++++ ++|
T Consensus 8 pdpnylmlsvdygng 22 (72)
T PHA02909 8 PDPNYLMLSVDYGNG 22 (72)
T ss_pred cCCCeEEEEEecCCC
Confidence 46899999998 455
No 141
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=50.86 E-value=29 Score=35.24 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=31.4
Q ss_pred HHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhc-CCCCCcEEEecCCCCC
Q 016783 86 KSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLG-TFLGVPFHVLLGDRDV 142 (383)
Q Consensus 86 ~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~v~GNHD~ 142 (383)
+.+...+||+|+++|- +|.|.. +..-+..++++ ...++| +++.||.|.
T Consensus 114 ~~I~~~~PDIILLaGG-tDGG~~-------e~~l~NA~~La~~~~~~p-IIyAGN~~a 162 (463)
T TIGR01319 114 EAIEESNLDIILFAGG-TDGGEE-------ECGIHNAKMLAEHGLDCA-IIVAGNKDI 162 (463)
T ss_pred HHHhhcCCCEEEEeCC-cCCCch-------HHHHHHHHHHHhcCCCCc-EEEeCCHHH
Confidence 3356689999999998 787763 22233344444 234567 567899985
No 142
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=49.32 E-value=21 Score=27.39 Aligned_cols=18 Identities=0% Similarity=-0.082 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016783 358 IAYGFVLISLSSIMLVAN 375 (383)
Q Consensus 358 ~~y~~~~~~~~~~~~~~~ 375 (383)
+.+++.+.+.+++++.|.
T Consensus 35 m~~lvI~~iFil~Vilwf 52 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWF 52 (94)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 345555555555555555
No 143
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=48.93 E-value=26 Score=23.36 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHh
Q 016783 354 SQLLIAYGFVLISLSSIMLVAN 375 (383)
Q Consensus 354 ~~~~~~y~~~~~~~~~~~~~~~ 375 (383)
..+|..|++.++++++++++.-
T Consensus 5 ~yVW~sYg~t~~~l~~l~~~~~ 26 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLIVWSL 26 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889877776666554433
No 144
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=47.09 E-value=26 Score=23.63 Aligned_cols=24 Identities=0% Similarity=-0.078 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc
Q 016783 359 AYGFVLISLSSIMLVANITQLRRS 382 (383)
Q Consensus 359 ~y~~~~~~~~~~~~~~~~~~~~~~ 382 (383)
...+++.++++.+++|-++.+||+
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccchh
Confidence 334555555666677777766654
No 145
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=46.93 E-value=23 Score=23.62 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=15.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 016783 353 ESQLLIAYGFVLISLSSIMLVANITQLR 380 (383)
Q Consensus 353 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 380 (383)
-..+|..|++.++++++++ ++...++|
T Consensus 5 ~~yVW~sYg~t~l~l~~li-~~~~~~~r 31 (45)
T TIGR03141 5 AFYVWLAYGITALVLAGLI-LWSLLDRR 31 (45)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3567788987666655444 33333333
No 146
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=46.30 E-value=97 Score=26.69 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChh
Q 016783 79 YMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRS 112 (383)
Q Consensus 79 ~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~ 112 (383)
.+.+++.+++...+.|+||.+|-.--+....+.+
T Consensus 50 ~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~e 83 (163)
T TIGR02667 50 QIRAQVSAWIADPDVQVILITGGTGFTGRDVTPE 83 (163)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHH
Confidence 3555565554445799999999976544433333
No 147
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=44.56 E-value=30 Score=34.59 Aligned_cols=113 Identities=10% Similarity=0.018 Sum_probs=70.6
Q ss_pred CCCCEEEeecc---CccCCCCCCCCCcCCcccccCCCCCCCccccccCChHHH-HHHHHHcCCceEEeccCCCCceee-c
Q 016783 235 KSGPVLLLHFP---LHRTMESQCGSQISNTREKRRFSEPGPYGLLHAVPLNAT-EYIFQALKPKIIFSAHAHEFCDYT-H 309 (383)
Q Consensus 235 ~~~~Il~~H~P---l~~~~~~~c~~~~~~~~~~~~~~~~g~y~~~~~l~~e~~-~~ll~~~~v~lvfsGH~H~~~~~~-~ 309 (383)
+-+++..+|.| ...+....|++.+... -+..+| .++|..+-++.. ..+++...+..-++|..|..|.+. +
T Consensus 208 ~~~r~~~~h~p~~~~~~p~l~~~~p~~~~h----~ply~g-~~~qc~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~ 282 (410)
T KOG3662|consen 208 GYPRILLAHDPDLYGIKPELPTSGPDRLQH----IPLYSG-SAAQCLFEPATKVIELNENIEREFDLSGDDEDHCSLLKL 282 (410)
T ss_pred CcceeeecccchhccCCcccCCCccccccc----ceeecc-cccccccccccchHHHhhhhhhhcccccccccceEEeec
Confidence 35569999999 3333345566655431 122222 356666544444 677787888899999999999877 3
Q ss_pred CC-------CceEEEecceeccCC-CCCcEEEEEEeCCC--------ceEEEeEeeccc
Q 016783 310 SD-------GTREVTVSAMTWKAR-DDPGFVIANFHGNG--------RGVSVSYCSLAR 352 (383)
Q Consensus 310 ~~-------~~~eitv~S~s~~~g-~~pgy~ll~i~~~~--------~~~~~~~c~lp~ 352 (383)
.. +..+++.+..++.+| -+++..+++...++ -+...-.|-.|+
T Consensus 283 ~~~~~~~g~~~~~~~~k~~~~~~g~~~~tv~~~s~~~~~~~~~i~~~~~~~~~~~s~~~ 341 (410)
T KOG3662|consen 283 NYKLVVGGHDHKEYNDKHASMSSGALEYTVLLLSLRFGQDFNMIFGGIFPDIKLVSSPR 341 (410)
T ss_pred ccccccCCcCccccccccccccccccccchhhhhhhccccHHHHhhccccceEEEEecC
Confidence 31 366677776655555 35677777765542 245666677755
No 148
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=44.40 E-value=1.2e+02 Score=25.61 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCC
Q 016783 79 YMAKFFRKSFHTLNPDMLLVLGDVSAKGSELT 110 (383)
Q Consensus 79 ~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~ 110 (383)
.+.+++.++.+..+.|+||.+|-..-+....+
T Consensus 48 ~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t 79 (152)
T cd00886 48 EIREALIEWADEDGVDLILTTGGTGLAPRDVT 79 (152)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCCCCcCc
Confidence 34555555544337899999999765444333
No 149
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=44.34 E-value=40 Score=31.00 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=26.5
Q ss_pred EEEcCCCCCCCC--CCChhcHHHHHHHHHHhhcC-C--CCCcEEEecCCCCCCC
Q 016783 96 LLVLGDVSAKGS--ELTRSDWLPVLDRFHQMLGT-F--LGVPFHVLLGDRDVGE 144 (383)
Q Consensus 96 vi~~GDl~d~~~--~~~~~~~~~~~~~~~~i~~~-~--~~~p~~~v~GNHD~~~ 144 (383)
.+|+||-+.+.- -..++.....+.+++.+-.. + -+.-+.+++|||++..
T Consensus 88 ciflgdhtgdrfsti~gd~yiltllnsm~nme~nkdsrinknvvvlagnhein~ 141 (318)
T PF13258_consen 88 CIFLGDHTGDRFSTIFGDQYILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINF 141 (318)
T ss_pred ceeecCcccchhhhhcchHHHHHHHHHHHhcccccccccccceEEEecCceecc
Confidence 378888664321 11233333334444433221 1 1357999999999965
No 150
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=39.24 E-value=29 Score=28.72 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhCCCCEEEEcCCCCCCC
Q 016783 80 MAKFFRKSFHTLNPDMLLVLGDVSAKG 106 (383)
Q Consensus 80 l~~~~~~~~~~~~PD~vi~~GDl~d~~ 106 (383)
+.+.+.++++ +.|+||.+|-.--+.
T Consensus 48 i~~~i~~~~~--~~DlvittGG~g~g~ 72 (133)
T cd00758 48 IRAALIEASR--EADLVLTTGGTGVGR 72 (133)
T ss_pred HHHHHHHHHh--cCCEEEECCCCCCCC
Confidence 4455555444 389999999976443
No 151
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=39.00 E-value=30 Score=23.20 Aligned_cols=21 Identities=19% Similarity=0.760 Sum_probs=14.0
Q ss_pred CCCcchhHHHHHHHHHHHhhhc
Q 016783 1 MRGIAWISLLPLIIVTSLIIYD 22 (383)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~y~ 22 (383)
|||+.|.+++.+++. .+++|.
T Consensus 1 ~kk~rwiili~iv~~-Cl~lyl 21 (47)
T PRK10299 1 MKKFRWVVLVVVVLA-CLLLWA 21 (47)
T ss_pred CceeeehHHHHHHHH-HHHHHH
Confidence 899988877655444 455655
No 152
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=35.27 E-value=79 Score=20.34 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=12.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 016783 351 ARESQLLIAYGFVLISLSSIMLVANITQLRR 381 (383)
Q Consensus 351 p~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 381 (383)
|+.-.-.+.-++.+++++++......+..||
T Consensus 2 p~s~IaIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 2 PSSTIAIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333334444444444444443333344443
No 153
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=35.15 E-value=1e+02 Score=30.33 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=28.3
Q ss_pred HHHHHhhC--CCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCC
Q 016783 84 FRKSFHTL--NPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRD 141 (383)
Q Consensus 84 ~~~~~~~~--~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD 141 (383)
+...+... +||.|||+|=+... +..+ +++.+-++. -.|++++||.-+
T Consensus 283 Ia~l~~~l~g~pD~IV~gGGI~e~-----~~l~----~~I~~~l~~--~a~v~~~pg~~e 331 (351)
T TIGR02707 283 IGKMAVVLKGKVDAIVLTGGLAYS-----KYFV----SEIIKRVSF--IAPVLVYPGEDE 331 (351)
T ss_pred HHHHHHHhCCCCCEEEEcchhhcC-----HHHH----HHHHHHHHh--hCCEEEeCCcHH
Confidence 33344567 89999999998742 1122 233333321 159999999554
No 154
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=34.23 E-value=31 Score=33.68 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCCEEEEcCCCC
Q 016783 81 AKFFRKSFHTLNPDMLLVLGDVS 103 (383)
Q Consensus 81 ~~~~~~~~~~~~PD~vi~~GDl~ 103 (383)
...+...+.+.+||+|++.||=+
T Consensus 56 ~~~~~~~~~~~~Pd~Vlv~GD~~ 78 (346)
T PF02350_consen 56 IIELADVLEREKPDAVLVLGDRN 78 (346)
T ss_dssp HHHHHHHHHHHT-SEEEEETTSH
T ss_pred HHHHHHHHHhcCCCEEEEEcCCc
Confidence 34556667889999999999944
No 155
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.68 E-value=2e+02 Score=23.71 Aligned_cols=55 Identities=11% Similarity=-0.047 Sum_probs=27.8
Q ss_pred HHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcC-CCCCcEEEe
Q 016783 82 KFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGT-FLGVPFHVL 136 (383)
Q Consensus 82 ~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~v 136 (383)
+.+...+...+||+|+++.=.-|-....+.+++.+.++++-+.+.. ..+++++++
T Consensus 30 ~~~~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 85 (157)
T cd01833 30 AAAADWVLAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVA 85 (157)
T ss_pred HHhhhccccCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3344445678999998854322221223445565555555554432 224455543
No 156
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=33.56 E-value=1e+02 Score=30.62 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=29.6
Q ss_pred HHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEe-cCCCCC
Q 016783 82 KFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVL-LGDRDV 142 (383)
Q Consensus 82 ~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v-~GNHD~ 142 (383)
..+.+++.+.+||+|++-||-.- -+......|. .++|+..| .|+--.
T Consensus 82 ~~~~~vl~~~kPD~VlVhGDT~t--------~lA~alaa~~------~~IpV~HvEAGlRt~ 129 (383)
T COG0381 82 EGLSKVLEEEKPDLVLVHGDTNT--------TLAGALAAFY------LKIPVGHVEAGLRTG 129 (383)
T ss_pred HHHHHHHHhhCCCEEEEeCCcch--------HHHHHHHHHH------hCCceEEEecccccC
Confidence 34566778999999999999442 1222222222 26899877 666544
No 157
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=32.73 E-value=1.3e+02 Score=28.26 Aligned_cols=75 Identities=8% Similarity=0.119 Sum_probs=46.2
Q ss_pred CCceEEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCC-CCCCCCChhcHHHHHHHHHHhhcCC
Q 016783 50 GVDLKVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVS-AKGSELTRSDWLPVLDRFHQMLGTF 128 (383)
Q Consensus 50 ~~~~~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~-d~~~~~~~~~~~~~~~~~~~i~~~~ 128 (383)
.+..+|++.||.|-..... . + +.+...+||++|+.|=.+ --|....++..+...+.++++.+..
T Consensus 174 dg~~~i~faSDvqGp~~~~----------~----l-~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~ 238 (304)
T COG2248 174 DGKSSIVFASDVQGPINDE----------A----L-EFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEET 238 (304)
T ss_pred cCCeEEEEcccccCCCccH----------H----H-HHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhC
Confidence 3567899999998533221 1 1 223455999999999987 3344444555566677777777642
Q ss_pred CCCcEEEecCCCCC
Q 016783 129 LGVPFHVLLGDRDV 142 (383)
Q Consensus 129 ~~~p~~~v~GNHD~ 142 (383)
+--.|.-.|=+
T Consensus 239 ---~~~lViDHHll 249 (304)
T COG2248 239 ---NATLVIDHHLL 249 (304)
T ss_pred ---cceEEEeehhh
Confidence 34444444544
No 158
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=31.81 E-value=49 Score=29.52 Aligned_cols=29 Identities=7% Similarity=-0.012 Sum_probs=21.2
Q ss_pred CCceEEeccCCCCceeecCCCceEEEecce
Q 016783 292 KPKIIFSAHAHEFCDYTHSDGTREVTVSAM 321 (383)
Q Consensus 292 ~v~lvfsGH~H~~~~~~~~~~~~eitv~S~ 321 (383)
+++.|++||+|....... ++...+.++|+
T Consensus 168 ~~~~iV~GHTh~~~~~~~-~~~i~ID~Gsv 196 (207)
T cd07424 168 GVDAVVHGHTPVKRPLRL-GNVLYIDTGAV 196 (207)
T ss_pred CCCEEEECCCCCCcceEE-CCEEEEECCCC
Confidence 468899999999875444 35666777765
No 159
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=31.31 E-value=1.1e+02 Score=29.29 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=40.5
Q ss_pred EEEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcE
Q 016783 54 KVMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPF 133 (383)
Q Consensus 54 ~i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~ 133 (383)
++++++|+|-.-. .+.+.|. .......|-++|+||++|.|..+ .+....+... +....-.+
T Consensus 44 ~i~ViGDIHG~~~------------dL~~l~~-~~g~~~~~~ylFLGDyVDRG~~s-----~Evi~lL~~l-ki~~p~~v 104 (305)
T cd07416 44 PVTVCGDIHGQFY------------DLLKLFE-VGGSPANTRYLFLGDYVDRGYFS-----IECVLYLWAL-KILYPKTL 104 (305)
T ss_pred CEEEEEeCCCCHH------------HHHHHHH-hcCCCCCceEEEECCccCCCCCh-----HHHHHHHHHH-HhhcCCCE
Confidence 4899999996211 1222222 22233458899999999998642 2222222221 11112258
Q ss_pred EEecCCCCC
Q 016783 134 HVLLGDRDV 142 (383)
Q Consensus 134 ~~v~GNHD~ 142 (383)
+.+.||||.
T Consensus 105 ~lLRGNHE~ 113 (305)
T cd07416 105 FLLRGNHEC 113 (305)
T ss_pred EEEeCCCcH
Confidence 999999996
No 160
>PF13941 MutL: MutL protein
Probab=30.57 E-value=82 Score=32.11 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=30.3
Q ss_pred HHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcC-CCCCcEEEecCCCCC
Q 016783 87 SFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGT-FLGVPFHVLLGDRDV 142 (383)
Q Consensus 87 ~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~v~GNHD~ 142 (383)
.+...+||+|+++|= +|.|.. +..-...+++.. ..++| +++.||-+.
T Consensus 119 ~i~~~~PDiILLaGG-tDgG~~-------~~il~nA~~La~~~~~~p-VIyAGN~~a 166 (457)
T PF13941_consen 119 EIREIRPDIILLAGG-TDGGNK-------EVILHNAEMLAEANLRIP-VIYAGNKAA 166 (457)
T ss_pred HHhccCCCEEEEeCC-ccCCch-------HHHHHHHHHHHhCCCCCc-EEEECCHHH
Confidence 367889999999998 777753 222223333332 23455 677899985
No 161
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=29.25 E-value=56 Score=29.57 Aligned_cols=29 Identities=7% Similarity=-0.151 Sum_probs=21.2
Q ss_pred CCceEEeccCCCCceeecCCCceEEEecce
Q 016783 292 KPKIIFSAHAHEFCDYTHSDGTREVTVSAM 321 (383)
Q Consensus 292 ~v~lvfsGH~H~~~~~~~~~~~~eitv~S~ 321 (383)
+.+.|++||+|....... ++...+.++|+
T Consensus 179 ~~~~vv~GHTh~~~~~~~-~~~i~IDtGs~ 207 (218)
T PRK09968 179 GADYFIFGHMMFDNIQTF-ANQIYIDTGSP 207 (218)
T ss_pred CCCEEEECCCCcCcceeE-CCEEEEECCCC
Confidence 568899999999765444 34666777774
No 162
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=28.98 E-value=1.6e+02 Score=28.80 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=30.3
Q ss_pred HHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEE-EecCCCCCC
Q 016783 82 KFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFH-VLLGDRDVG 143 (383)
Q Consensus 82 ~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~-~v~GNHD~~ 143 (383)
..+.+.+.+.+||+|+..||-+.. .......+ ..++|+. +-.|++-.+
T Consensus 83 ~~~~~~~~~~~Pd~vlv~GD~~~~--------la~alaA~------~~~IPv~HveaG~rs~~ 131 (365)
T TIGR03568 83 IGFSDAFERLKPDLVVVLGDRFEM--------LAAAIAAA------LLNIPIAHIHGGEVTEG 131 (365)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHH--------HHHHHHHH------HhCCcEEEEECCccCCC
Confidence 445667788999999999995421 11111112 1378998 447778654
No 163
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=28.90 E-value=1.7e+02 Score=27.29 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=40.5
Q ss_pred EEEEecCCCCCCCCCcccccchHHHHHHHHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEE
Q 016783 55 VMMVANLLLVGSDSGFVDRHFRDYYMAKFFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFH 134 (383)
Q Consensus 55 i~~isD~hl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~ 134 (383)
+.+++|.|..... .+.. +.+......++....+|.|+++|.-+.... + .+..+++++.. ++|++
T Consensus 141 v~ilaDV~~kh~~--~l~~----~~~~~~~~~a~~~~~aDaviVtG~~TG~~~--~----~~~l~~vr~~~----~~PVl 204 (254)
T PF03437_consen 141 VKILADVHVKHSS--PLAT----RDLEEAAKDAVERGGADAVIVTGKATGEPP--D----PEKLKRVREAV----PVPVL 204 (254)
T ss_pred eEEEeeechhhcc--cCCC----CCHHHHHHHHHHhcCCCEEEECCcccCCCC--C----HHHHHHHHhcC----CCCEE
Confidence 7888899985322 2221 123333445566789999999999875432 2 23355666653 26877
Q ss_pred Eec
Q 016783 135 VLL 137 (383)
Q Consensus 135 ~v~ 137 (383)
+=-
T Consensus 205 vGS 207 (254)
T PF03437_consen 205 VGS 207 (254)
T ss_pred Eec
Confidence 533
No 164
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=28.82 E-value=58 Score=27.33 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhCCCCEEEEcCCCCCC
Q 016783 79 YMAKFFRKSFHTLNPDMLLVLGDVSAK 105 (383)
Q Consensus 79 ~l~~~~~~~~~~~~PD~vi~~GDl~d~ 105 (383)
.+.+.+.++.+ +.|+||.+|-.--.
T Consensus 55 ~i~~~l~~~~~--~~DliIttGG~g~g 79 (144)
T TIGR00177 55 EIREILRKAVD--EADVVLTTGGTGVG 79 (144)
T ss_pred HHHHHHHHHHh--CCCEEEECCCCCCC
Confidence 34455544433 78999999986543
No 165
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=27.74 E-value=51 Score=31.04 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCce-EEeccC
Q 016783 281 LNATEYIFQALKPKI-IFSAHA 301 (383)
Q Consensus 281 ~e~~~~ll~~~~v~l-vfsGH~ 301 (383)
++....||++++||+ |++||+
T Consensus 142 p~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 142 PEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred hHHHHHHHHHhCCCEEEEeCch
No 166
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=27.73 E-value=52 Score=31.15 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=18.9
Q ss_pred hHHHHHHHHHcCCce-EEeccCCC
Q 016783 281 LNATEYIFQALKPKI-IFSAHAHE 303 (383)
Q Consensus 281 ~e~~~~ll~~~~v~l-vfsGH~H~ 303 (383)
++...+||++++||+ |++||+=.
T Consensus 143 p~~i~~Ll~~~~PDIlViTGHD~~ 166 (287)
T PF05582_consen 143 PEKIYRLLEEYRPDILVITGHDGY 166 (287)
T ss_pred hHHHHHHHHHcCCCEEEEeCchhh
Confidence 345789999999995 99999864
No 167
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=27.71 E-value=2e+02 Score=24.19 Aligned_cols=50 Identities=12% Similarity=0.284 Sum_probs=28.1
Q ss_pred HHHHHhhCCCCEEEEcC---CCCCCCCCCChhcHHHHHHHHHHhhcC-CCCCcEEEe
Q 016783 84 FRKSFHTLNPDMLLVLG---DVSAKGSELTRSDWLPVLDRFHQMLGT-FLGVPFHVL 136 (383)
Q Consensus 84 ~~~~~~~~~PD~vi~~G---Dl~d~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~v 136 (383)
+...+...+||.|++++ |+... .+.+++.+.++.+-+.+.. ..+.+++++
T Consensus 42 ~~~~~~~~~p~~vvi~~G~ND~~~~---~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 42 FDRLVLPYQPRRVVLYAGDNDLASG---RTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred HHhhhccCCCCEEEEEEecCcccCC---CCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 33444567899998855 65432 2355666655555554432 224566655
No 168
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.25 E-value=2.3e+02 Score=23.72 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=25.1
Q ss_pred HHHHHhhCCCCEEEE-cC--CCCCCCCCCChhcHHHHHHHHHHhhcC-CCCCcEEEe
Q 016783 84 FRKSFHTLNPDMLLV-LG--DVSAKGSELTRSDWLPVLDRFHQMLGT-FLGVPFHVL 136 (383)
Q Consensus 84 ~~~~~~~~~PD~vi~-~G--Dl~d~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~v 136 (383)
+.+.+ ..+||+|++ .| |+.. ..+.++|.+.++.+-+.+.. ..+.+++++
T Consensus 41 l~~~~-~~~pd~vvl~~G~ND~~~---~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 41 LDEDV-ALQPKAIFIMIGINDLAQ---GTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred HHHHh-ccCCCEEEEEeeccCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 33334 668999876 44 4432 23455565555544444432 235566554
No 169
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=27.02 E-value=57 Score=31.24 Aligned_cols=38 Identities=39% Similarity=0.474 Sum_probs=23.6
Q ss_pred eEeeccccchhhH-HHHHHHHHHHHHHHHHhhhhhhccC
Q 016783 346 SYCSLARESQLLI-AYGFVLISLSSIMLVANITQLRRSR 383 (383)
Q Consensus 346 ~~c~lp~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
..|-.-....+.. +-+++++.+++|+|++.+-.|||+|
T Consensus 262 ~~C~~D~~~~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 262 EECSSDDTSDLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred hcCCcCCccchHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 4476654344443 3456666677777888877777764
No 170
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=26.49 E-value=1.2e+02 Score=28.86 Aligned_cols=27 Identities=19% Similarity=0.392 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHHHhhCCCCEEEEcC
Q 016783 74 HFRDYYMAKFFRKSFHTLNPDMLLVLG 100 (383)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~PD~vi~~G 100 (383)
...+..+-+.+..++...+||++|+||
T Consensus 136 ~~~E~eqp~~i~~Ll~~~~PDIlViTG 162 (287)
T PF05582_consen 136 HVPEKEQPEKIYRLLEEYRPDILVITG 162 (287)
T ss_pred EechHHhhHHHHHHHHHcCCCEEEEeC
Confidence 445556666677788999999999998
No 171
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=26.43 E-value=1.1e+02 Score=28.29 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=23.2
Q ss_pred CEEEEcCCCCCCC---C--CCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCCC
Q 016783 94 DMLLVLGDVSAKG---S--ELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDVG 143 (383)
Q Consensus 94 D~vi~~GDl~d~~---~--~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~~ 143 (383)
+-++|+||.+-.+ . ..+.++|.+. +.++.+. +....++|| |+..
T Consensus 119 ~~~lftGDtl~~~g~g~~~~~~~~~~~~S---l~~l~~l--~~~~~i~pG-H~~~ 167 (248)
T TIGR03413 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDS---LQRLAAL--PDDTLVYCA-HEYT 167 (248)
T ss_pred CCEEEEcCccccCCcCCCCCCCHHHHHHH---HHHHHcC--CCCeEEECC-CCch
Confidence 4589999975432 1 1233444443 3333321 223567899 8753
No 172
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=25.72 E-value=2.6e+02 Score=23.41 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=5.5
Q ss_pred HhhCCCCEEEE
Q 016783 88 FHTLNPDMLLV 98 (383)
Q Consensus 88 ~~~~~PD~vi~ 98 (383)
+...+||+|++
T Consensus 60 ~~~~~pd~v~i 70 (177)
T cd01822 60 LAQHKPDLVIL 70 (177)
T ss_pred HHhcCCCEEEE
Confidence 33445665544
No 173
>PRK00292 glk glucokinase; Provisional
Probab=25.69 E-value=1.1e+02 Score=29.12 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=33.5
Q ss_pred HHHHHHHhhCCCC-EEEEcCCCCC-CCCCCChhcHHHHHHHHHH--hhc-CCCCCcEEEecCCCCCCC
Q 016783 82 KFFRKSFHTLNPD-MLLVLGDVSA-KGSELTRSDWLPVLDRFHQ--MLG-TFLGVPFHVLLGDRDVGE 144 (383)
Q Consensus 82 ~~~~~~~~~~~PD-~vi~~GDl~d-~~~~~~~~~~~~~~~~~~~--i~~-~~~~~p~~~v~GNHD~~~ 144 (383)
..+..+++..+|+ .|++.|.++. .+....+..+. ++|.+ .+. ....+|++.+.|+ |.|.
T Consensus 243 ~~i~~l~~~~~P~~~vvi~Gg~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~-~agl 306 (316)
T PRK00292 243 RVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFR---AAFEDKGRFSAYLADIPVYVITHP-QPGL 306 (316)
T ss_pred HHHHHHHHHhcCCceEEEeCchHHhHHhhhccHHHH---HHHhcCCChhhHHhcCCEEEEcCC-ChHH
Confidence 3344456789999 9999999884 22222221222 22332 111 1136799999998 7653
No 174
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=25.04 E-value=53 Score=32.18 Aligned_cols=36 Identities=14% Similarity=-0.129 Sum_probs=23.8
Q ss_pred EEEeEeeccccchhhHHHHHH--HHHHHHHHHHHhhhh
Q 016783 343 VSVSYCSLARESQLLIAYGFV--LISLSSIMLVANITQ 378 (383)
Q Consensus 343 ~~~~~c~lp~~~~~~~~y~~~--~~~~~~~~~~~~~~~ 378 (383)
++-++.|||+=--++.+-+.+ ==++-++|-+.|+|-
T Consensus 341 cSPHPYWLPnFMDVFTWSLPFVGEKVTeMLV~iLNICS 378 (517)
T KOG0375|consen 341 CSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLNICS 378 (517)
T ss_pred CCCCCccccchhhheeeccccchHHHHHHHHHHHhhCc
Confidence 456788999766666655533 346777777777763
No 175
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.75 E-value=2.2e+02 Score=21.48 Aligned_cols=47 Identities=17% Similarity=0.349 Sum_probs=31.8
Q ss_pred HHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCC
Q 016783 86 KSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDV 142 (383)
Q Consensus 86 ~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~ 142 (383)
..+...+||++++-.++.+.. ..+..+.+++.. .++|++++-+++|.
T Consensus 37 ~~~~~~~~d~iiid~~~~~~~-------~~~~~~~i~~~~---~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLELPDGD-------GLELLEQIRQIN---PSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHSTESEEEEESSSSSSB-------HHHHHHHHHHHT---TTSEEEEEESSTSH
T ss_pred HHhcccCceEEEEEeeecccc-------cccccccccccc---ccccEEEecCCCCH
Confidence 445678899999988877621 134455565553 36789888877774
No 176
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=24.53 E-value=81 Score=29.85 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCChhHHHHHHhhCCCCC
Q 016783 138 GDRDVGECSGLDTGSVDWIAGNFPGLD 164 (383)
Q Consensus 138 GNHD~~~~~~~~~~~~~~f~~~f~~~~ 164 (383)
|.+|-...+.+..+..+.|++.||..+
T Consensus 98 ~~~d~e~~~klEKel~e~~~~~fg~e~ 124 (295)
T TIGR01478 98 GGNGAEPMSTIEKELLEKYEEMFGDES 124 (295)
T ss_pred ccCCcchhhHHHHHHHHHHHHHhCCcc
Confidence 445543333344455788999998754
No 177
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=24.08 E-value=1.7e+02 Score=27.68 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=27.2
Q ss_pred CceEEEEEecCCCCCCCCCcccccchH-HHHHHHHHHHHhhCCCCEEEEcCCCC
Q 016783 51 VDLKVMMVANLLLVGSDSGFVDRHFRD-YYMAKFFRKSFHTLNPDMLLVLGDVS 103 (383)
Q Consensus 51 ~~~~i~~isD~hl~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~PD~vi~~GDl~ 103 (383)
+..| +++.-.||-........+ ... ....+...++++.+.--.|||.||+-
T Consensus 202 ~G~K-l~l~tsHLEStr~h~P~r-~~qF~~~~~k~~EaIe~lPnA~ViFGGD~N 253 (349)
T KOG2756|consen 202 SGNK-LCLMTSHLESTRGHAPER-MNQFKMVLKKMQEAIESLPNATVIFGGDTN 253 (349)
T ss_pred cCce-EEEEeccccCCCCCChHH-HHHHHHHHHHHHHHHHhCCCceEEEcCccc
Confidence 3445 666777886544321111 111 01123345667777445688999974
No 178
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=24.03 E-value=1.7e+02 Score=26.09 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhCCCCEEEEcCCCCCCCC
Q 016783 79 YMAKFFRKSFHTLNPDMLLVLGDVSAKGS 107 (383)
Q Consensus 79 ~l~~~~~~~~~~~~PD~vi~~GDl~d~~~ 107 (383)
.+.+++.+++...+.|+||.+|-.--...
T Consensus 53 ~I~~aL~~a~~~~~~DlIITTGGtg~g~r 81 (193)
T PRK09417 53 LIEQTLIELVDEMGCDLVLTTGGTGPARR 81 (193)
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCCCCC
Confidence 34555655554457999999998654333
No 179
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=24.02 E-value=30 Score=25.66 Aligned_cols=7 Identities=57% Similarity=1.094 Sum_probs=3.7
Q ss_pred ceEEecc
Q 016783 294 KIIFSAH 300 (383)
Q Consensus 294 ~lvfsGH 300 (383)
|++||||
T Consensus 4 DliFSGH 10 (74)
T PF14360_consen 4 DLIFSGH 10 (74)
T ss_pred CEEEchh
Confidence 4455555
No 180
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=23.81 E-value=3.1e+02 Score=22.99 Aligned_cols=52 Identities=10% Similarity=0.227 Sum_probs=25.6
Q ss_pred HHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcC-CCCCcEEE
Q 016783 84 FRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGT-FLGVPFHV 135 (383)
Q Consensus 84 ~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~ 135 (383)
+...+...+||.|++..=.=|-....+.++|.+.++.+-+.+.. ..++++++
T Consensus 43 ~~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~ 95 (174)
T cd01841 43 IEPQLIQKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIYL 95 (174)
T ss_pred HHHHHHhcCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 43445567899987754222222222455665555555544432 22344444
No 181
>PTZ00370 STEVOR; Provisional
Probab=23.35 E-value=88 Score=29.69 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCChhHHHHHHhhCCCCC
Q 016783 138 GDRDVGECSGLDTGSVDWIAGNFPGLD 164 (383)
Q Consensus 138 GNHD~~~~~~~~~~~~~~f~~~f~~~~ 164 (383)
|.+|-...+.+..+..+.|++.||..+
T Consensus 97 ~~~d~e~k~klEKel~e~~ee~fg~~~ 123 (296)
T PTZ00370 97 GGNDAEPMSTLEKELLETYEEMFGDES 123 (296)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcCcc
Confidence 444543333344455789999998754
No 182
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=23.29 E-value=72 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC
Q 016783 361 GFVLISLSSIMLVANITQLRRSR 383 (383)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
..=+++|++|++...++++-|+|
T Consensus 41 ~~D~vlTLLIv~~vy~car~r~r 63 (79)
T PF07213_consen 41 AADAVLTLLIVLVVYYCARPRRR 63 (79)
T ss_pred HHHHHHHHHHHHHHHhhcccccC
Confidence 34467788888777777765554
No 183
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.77 E-value=1.9e+02 Score=24.85 Aligned_cols=38 Identities=26% Similarity=0.586 Sum_probs=23.5
Q ss_pred HHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCC
Q 016783 87 SFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGD 139 (383)
Q Consensus 87 ~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GN 139 (383)
.+...+||+||..+...+. +..+.+.++ ++|++++...
T Consensus 64 ~ll~l~PDlii~~~~~~~~----------~~~~~l~~~-----gIpvv~i~~~ 101 (186)
T cd01141 64 LIVALKPDLVILYGGFQAQ----------TILDKLEQL-----GIPVLYVNEY 101 (186)
T ss_pred HHhccCCCEEEEecCCCch----------hHHHHHHHc-----CCCEEEeCCC
Confidence 3557899999986532210 123445544 7899999743
No 184
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=22.43 E-value=88 Score=26.96 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhhhccC
Q 016783 362 FVLISLSSIMLVANITQLRRSR 383 (383)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~ 383 (383)
...|..++.+|.|.+.++|.+|
T Consensus 156 ~~VlA~~VA~L~~~F~RR~~rr 177 (215)
T PF05084_consen 156 AVVLAVSVAMLTWFFLRRTGRR 177 (215)
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 3444556667888888887765
No 185
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=22.40 E-value=80 Score=23.39 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 016783 361 GFVLISLSSIMLVANITQLR 380 (383)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ 380 (383)
.+++|++.+.++++|+..+|
T Consensus 20 ~vf~i~s~f~~I~~Nl~~~r 39 (71)
T PF10260_consen 20 PVFFILSGFYLIFTNLGTPR 39 (71)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 35677777777899988733
No 186
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.89 E-value=3e+02 Score=23.50 Aligned_cols=10 Identities=10% Similarity=0.468 Sum_probs=5.4
Q ss_pred eEEEEEecCC
Q 016783 53 LKVMMVANLL 62 (383)
Q Consensus 53 ~~i~~isD~h 62 (383)
+||++++|.=
T Consensus 3 ~~i~~~GDSi 12 (191)
T cd01836 3 LRLLVLGDST 12 (191)
T ss_pred eEEEEEeccc
Confidence 4556666543
No 187
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.39 E-value=1.7e+02 Score=29.34 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=36.1
Q ss_pred CceEEeccCCCCceeecCCCceEEEec-ceeccCCC-CCcEEEEEEeCCCceEEEeEeeccc
Q 016783 293 PKIIFSAHAHEFCDYTHSDGTREVTVS-AMTWKARD-DPGFVIANFHGNGRGVSVSYCSLAR 352 (383)
Q Consensus 293 v~lvfsGH~H~~~~~~~~~~~~eitv~-S~s~~~g~-~pgy~ll~i~~~~~~~~~~~c~lp~ 352 (383)
.+.|-=||+|.++.+.-...+++-..| .+|+...+ ..|+.+|++++++ ....+...||.
T Consensus 221 ~dYvALGHlH~~Q~v~~~~~vrYsGSpl~~sFsE~~~~K~v~lVel~~~~-~~~v~~i~l~~ 281 (407)
T PRK10966 221 ADYIALGHIHRAQKVGGTEHIRYSGSPIPLSFDELGKSKSVHLVEFDQGK-LQSVTPLPVPV 281 (407)
T ss_pred cCeeeccccccCcCCCCCCcEEEcCCCCCCCccccCCCCeEEEEEEcCCc-cceEEEEECCC
Confidence 477888999999866211234433333 23444333 4799999998776 34555555654
No 188
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.21 E-value=3.2e+02 Score=21.59 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=29.2
Q ss_pred HHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCC
Q 016783 84 FRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDV 142 (383)
Q Consensus 84 ~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~ 142 (383)
+.+.+.+.+||+|.++.=..+.- +...+..+.+++. ..+-..+++-|+|-.
T Consensus 42 l~~~~~~~~pdvV~iS~~~~~~~-----~~~~~~i~~l~~~---~~~~~~i~vGG~~~~ 92 (119)
T cd02067 42 IVEAAKEEDADAIGLSGLLTTHM-----TLMKEVIEELKEA---GLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHcCCCEEEEeccccccH-----HHHHHHHHHHHHc---CCCCCeEEEECCCCC
Confidence 55667788999999976544311 1122333333332 111356889999864
No 189
>PRK03011 butyrate kinase; Provisional
Probab=21.13 E-value=2.2e+02 Score=28.00 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHhhC--CCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhcCCCCCcEEEecCCCCC
Q 016783 87 SFHTL--NPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLGTFLGVPFHVLLGDRDV 142 (383)
Q Consensus 87 ~~~~~--~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~v~GNHD~ 142 (383)
.+..+ +||.|||+|=+.. .. . ..+.+.+.++.. .|+.++||+.+.
T Consensus 288 l~~~L~gdpD~IVlgGGI~~-~~----~----l~~~I~~~l~~~--~pv~i~p~~~e~ 334 (358)
T PRK03011 288 MAAVLKGKVDAIVLTGGLAY-SK----R----LVERIKERVSFI--APVIVYPGEDEM 334 (358)
T ss_pred HHHHhCCCCCEEEEeCcccc-CH----H----HHHHHHHHHHhh--CCeEEEeCCCHH
Confidence 34555 7999999998874 21 1 122333333211 489999999884
No 190
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=20.97 E-value=3e+02 Score=22.87 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=29.3
Q ss_pred ceEEeccCCCCceeecCCCceEEEecceeccCCCCCcEEEEEEeCC
Q 016783 294 KIIFSAHAHEFCDYTHSDGTREVTVSAMTWKARDDPGFVIANFHGN 339 (383)
Q Consensus 294 ~lvfsGH~H~~~~~~~~~~~~eitv~S~s~~~g~~pgy~ll~i~~~ 339 (383)
.+|=|||.|..-...|.+.+...++.++ |+-| .|-.-.|++.++
T Consensus 14 vlIKC~~ec~~v~i~~kNKt~~~~~~~~-WqPG-d~~~ytVtV~G~ 57 (139)
T PF04881_consen 14 VLIKCGWECESVNITHKNKTWNNTVYPT-WQPG-DPEWYTVTVQGP 57 (139)
T ss_pred EEEEeccccceEEEEecccccCceeeee-ccCC-CCcceEEEEECC
Confidence 3588999999877788777777777544 5554 333345555543
No 191
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=20.90 E-value=3.7e+02 Score=23.30 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=21.8
Q ss_pred HHHHHHhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhhc
Q 016783 83 FFRKSFHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQMLG 126 (383)
Q Consensus 83 ~~~~~~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~~ 126 (383)
.+.+.+...+||.|+++.=.-|-....+.++|.+.++.+.+.+.
T Consensus 62 rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~ 105 (191)
T PRK10528 62 RLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVK 105 (191)
T ss_pred HHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHH
Confidence 34444555688887764433222222334555555555544443
No 192
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=20.25 E-value=66 Score=28.91 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=13.0
Q ss_pred CCceEEeccCCCCceee
Q 016783 292 KPKIIFSAHAHEFCDYT 308 (383)
Q Consensus 292 ~v~lvfsGH~H~~~~~~ 308 (383)
+..+++||+.|......
T Consensus 192 ~~vv~lSGDvH~~~~~~ 208 (228)
T cd07389 192 KNVVFLSGDVHLAEASD 208 (228)
T ss_pred CCeEEEecHHHHHHHhh
Confidence 45679999999876443
No 193
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.10 E-value=3.9e+02 Score=22.61 Aligned_cols=38 Identities=8% Similarity=0.150 Sum_probs=17.4
Q ss_pred HhhCCCCEEEEcCCCCCCCCCCChhcHHHHHHHHHHhh
Q 016783 88 FHTLNPDMLLVLGDVSAKGSELTRSDWLPVLDRFHQML 125 (383)
Q Consensus 88 ~~~~~PD~vi~~GDl~d~~~~~~~~~~~~~~~~~~~i~ 125 (383)
+...+||.|++..=.-|.....+.+++.+.++.+-+.+
T Consensus 55 ~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~ 92 (183)
T cd04501 55 VIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELA 92 (183)
T ss_pred HHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHH
Confidence 44567887765442122111123445555555444444
Done!