Query 016785
Match_columns 382
No_of_seqs 191 out of 1357
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ews_A RK-1 defensin, alpha-de 13.5 44 0.0015 20.1 0.2 9 9-17 8-16 (32)
2 2ckc_A Chromodomain-helicase-D 9.5 36 0.0012 25.7 -1.4 13 41-53 47-59 (80)
3 2k8f_B Cellular tumor antigen 8.8 1.6E+02 0.0054 18.7 1.6 12 1-12 1-12 (39)
4 2e3e_A Defensin, mutant DEF-BB 7.5 1.2E+02 0.0042 20.3 0.7 8 15-22 2-9 (45)
5 3arc_T Photosystem II reaction 7.3 4.7E+02 0.016 16.2 3.7 15 324-338 11-25 (32)
6 2ln4_A Coprisin; antimicrobial 7.2 1.3E+02 0.0045 20.1 0.7 9 15-23 2-10 (44)
7 1ica_A Insect defensin A; anti 6.7 1.3E+02 0.0044 19.7 0.5 7 15-21 2-8 (40)
8 2e3g_A Defensin, mutant DEF-DA 6.5 1.3E+02 0.0046 19.6 0.5 7 15-21 2-8 (40)
9 1p4q_A CBP/P300-interacting tr 6.5 1.7E+02 0.006 19.9 1.0 18 35-52 28-46 (52)
10 2cka_A Chromodomain-helicase-D 6.1 1.1E+02 0.0037 24.0 -0.2 12 40-51 65-76 (95)
No 1
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=13.49 E-value=44 Score=20.11 Aligned_cols=9 Identities=56% Similarity=1.176 Sum_probs=6.6
Q ss_pred CCCcccccc
Q 016785 9 SVDPWETCD 17 (382)
Q Consensus 9 ~~~~~~~~~ 17 (382)
--||||.-|
T Consensus 8 ycdpwevid 16 (32)
T 1ews_A 8 YCDPWEVID 16 (32)
T ss_dssp SCCTTEEEE
T ss_pred ccChhheec
Confidence 469999755
No 2
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=9.54 E-value=36 Score=25.69 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=9.4
Q ss_pred cCCCcccccCCcc
Q 016785 41 QKLPLYLRDNEYI 53 (382)
Q Consensus 41 ~elP~~~~dN~yI 53 (382)
++|++|+|+||=.
T Consensus 47 KdL~dWLrqhP~y 59 (80)
T 2ckc_A 47 KDLVEWLKLHPTY 59 (80)
T ss_dssp HHHHHHHHHCTTE
T ss_pred cCHHHHHHHCCCc
Confidence 4677899987643
No 3
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=8.84 E-value=1.6e+02 Score=18.75 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCc
Q 016785 1 MMNSHSESSVDP 12 (382)
Q Consensus 1 ~~~~~~~~~~~~ 12 (382)
||.+.||-+++|
T Consensus 1 mme~qsd~siep 12 (39)
T 2k8f_B 1 MEEPQSDPSVEP 12 (39)
T ss_dssp CCSSCCCSSCCC
T ss_pred CCCcccccccCC
Confidence 677777777776
No 4
>2e3e_A Defensin, mutant DEF-BBB; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2e3f_A 2ny9_X
Probab=7.49 E-value=1.2e+02 Score=20.33 Aligned_cols=8 Identities=50% Similarity=0.887 Sum_probs=6.2
Q ss_pred cccccccc
Q 016785 15 TCDLLDCK 22 (382)
Q Consensus 15 ~~~~~~~~ 22 (382)
||||+|-.
T Consensus 2 tCdlls~~ 9 (45)
T 2e3e_A 2 TCDLASFS 9 (45)
T ss_dssp CSSCCCTT
T ss_pred eeEecccc
Confidence 89999843
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=7.33 E-value=4.7e+02 Score=16.19 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhcCCc
Q 016785 324 FYGFGALIYAMRVPE 338 (382)
Q Consensus 324 ~y~iGa~fYa~r~PE 338 (382)
..++|.+|+|.-+.|
T Consensus 11 ~~tlgiiFFAI~FRe 25 (32)
T 3arc_T 11 ACIIALFFFAIFFRE 25 (32)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhhhcC
Confidence 446788888876655
No 6
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus}
Probab=7.25 E-value=1.3e+02 Score=20.10 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=6.6
Q ss_pred ccccccccc
Q 016785 15 TCDLLDCKE 23 (382)
Q Consensus 15 ~~~~~~~~~ 23 (382)
||||+|-+.
T Consensus 2 tCDlLs~~~ 10 (44)
T 2ln4_A 2 TCDVLSFEA 10 (44)
T ss_dssp CSCCCCCCC
T ss_pred eeeeecccc
Confidence 899998543
No 7
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X
Probab=6.68 E-value=1.3e+02 Score=19.70 Aligned_cols=7 Identities=71% Similarity=1.198 Sum_probs=5.3
Q ss_pred ccccccc
Q 016785 15 TCDLLDC 21 (382)
Q Consensus 15 ~~~~~~~ 21 (382)
||||+|.
T Consensus 2 tCdlls~ 8 (40)
T 1ica_A 2 TCDLLSG 8 (40)
T ss_dssp CCSCSST
T ss_pred eEEeecc
Confidence 7888874
No 8
>2e3g_A Defensin, mutant DEF-DAA; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2nz3_A
Probab=6.50 E-value=1.3e+02 Score=19.63 Aligned_cols=7 Identities=57% Similarity=0.914 Sum_probs=5.4
Q ss_pred ccccccc
Q 016785 15 TCDLLDC 21 (382)
Q Consensus 15 ~~~~~~~ 21 (382)
||||+|-
T Consensus 2 tCdlls~ 8 (40)
T 2e3g_A 2 TCDLASK 8 (40)
T ss_dssp TTCCSSS
T ss_pred eeEecCc
Confidence 7888874
No 9
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=6.46 E-value=1.7e+02 Score=19.90 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=13.3
Q ss_pred ceeeeccCCCc-ccccCCc
Q 016785 35 WHLVEYQKLPL-YLRDNEY 52 (382)
Q Consensus 35 ~~l~~~~elP~-~~~dN~y 52 (382)
..|=+.+|+|+ |+-.|++
T Consensus 28 LGLdRv~ELPEL~LgqnEf 46 (52)
T 1p4q_A 28 MGLDRIKELPELWLGQNEF 46 (52)
T ss_dssp HTSSSCSSCCCCCSCCSTT
T ss_pred HhhHHHHHhHHHHhCcchh
Confidence 45667889997 6777775
No 10
>2cka_A Chromodomain-helicase-DNA-binding protein 8; BRK domain, transcription elongation, chromatin remodeling, protein-protein interaction, transcription; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=6.09 E-value=1.1e+02 Score=23.98 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=9.5
Q ss_pred ccCCCcccccCC
Q 016785 40 YQKLPLYLRDNE 51 (382)
Q Consensus 40 ~~elP~~~~dN~ 51 (382)
.++|++||++||
T Consensus 65 ~K~L~~WLk~np 76 (95)
T 2cka_A 65 RAELEMWLQGHP 76 (95)
T ss_dssp HHHHHHHHHHCT
T ss_pred HhHHHHHHHHCC
Confidence 457888999986
Done!