Query 016786
Match_columns 382
No_of_seqs 216 out of 387
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.1 9.8E-06 3.3E-10 67.0 9.3 66 120-185 38-104 (110)
2 2i68_A Protein EMRE; transmemb 98.0 7.2E-06 2.5E-10 70.7 6.5 67 120-186 38-105 (137)
3 2i68_A Protein EMRE; transmemb 95.5 0.025 8.4E-07 48.4 6.4 41 312-352 64-104 (137)
4 3b5d_A Multidrug transporter E 94.2 0.2 6.9E-06 40.7 8.4 39 312-350 64-102 (110)
5 3l1l_A Arginine/agmatine antip 24.5 66 0.0022 30.8 4.5 24 335-358 410-433 (445)
6 2jo1_A Phospholemman; FXYD1, N 14.5 1.4E+02 0.0048 22.3 3.2 20 335-354 21-40 (72)
7 2jp3_A FXYD domain-containing 11.2 1.6E+02 0.0053 21.8 2.6 21 335-355 22-42 (67)
8 2rdd_B UPF0092 membrane protei 8.4 2.2E+02 0.0076 18.1 2.3 15 348-362 16-30 (37)
9 2zxe_G FXYD10, phospholemman-l 8.0 2.6E+02 0.009 21.0 2.8 21 335-355 24-44 (74)
10 4ev6_A Magnesium transport pro 7.6 4.5E+02 0.015 24.5 5.1 47 309-355 283-337 (339)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.14 E-value=9.8e-06 Score=67.03 Aligned_cols=66 Identities=9% Similarity=0.184 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHH-HhhhHHHHHHHHHHHhcCccChhHHHHHHHHHHHHHhheec
Q 016786 120 LLLTGDNMMYSYGLLYLPVSTYSLL-CATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVN 185 (382)
Q Consensus 120 ll~~~~n~Ly~~gl~ylp~St~sll-~ssql~Ftaifs~lilkek~t~~~i~svvLl~~G~vll~~~ 185 (382)
+.++...+++..+++++|.|+..-+ ....++++++.++++++|++|+.++.++++..+|++++...
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445666888899999999999777 89999999999999999999999999999999999998654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.03 E-value=7.2e-06 Score=70.67 Aligned_cols=67 Identities=9% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHH-HhhhHHHHHHHHHHHhcCccChhHHHHHHHHHHHHHhheecC
Q 016786 120 LLLTGDNMMYSYGLLYLPVSTYSLL-CATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (382)
Q Consensus 120 ll~~~~n~Ly~~gl~ylp~St~sll-~ssql~Ftaifs~lilkek~t~~~i~svvLl~~G~vll~~~~ 186 (382)
+.++...++|+.+++++|+|+...+ ....+++++++++++++|++++.++.|+++.++|++++...+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445566889999999999977777 899999999999999999999999999999999999986543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.48 E-value=0.025 Score=48.42 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=28.7
Q ss_pred HHhhhHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhh
Q 016786 312 STLSLPVIPILAVIFFHDKMNGLKAIAMLLAIWGFLSYIYQ 352 (382)
Q Consensus 312 ~~~~lpl~~ilavi~fgE~~~~~kiig~~L~l~G~~~y~y~ 352 (382)
..+.+.++.++++++|||++++.+++|+++++.|+......
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44555577999999999999999999999999998877543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=94.15 E-value=0.2 Score=40.75 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=33.0
Q ss_pred HHhhhHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Q 016786 312 STLSLPVIPILAVIFFHDKMNGLKAIAMLLAIWGFLSYI 350 (382)
Q Consensus 312 ~~~~lpl~~ilavi~fgE~~~~~kiig~~L~l~G~~~y~ 350 (382)
..+.+.++.++++++|||+++..|++|.++++.|+...-
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 344555779999999999999999999999998887653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.47 E-value=66 Score=30.84 Aligned_cols=24 Identities=4% Similarity=-0.211 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhccchhh
Q 016786 335 KAIAMLLAIWGFLSYIYQHYLDDY 358 (382)
Q Consensus 335 kiig~~L~l~G~~~y~y~~~~~~~ 358 (382)
...+.++.+.|+..|.+.++.++|
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 455777788888888775444333
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=14.51 E-value=1.4e+02 Score=22.30 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 016786 335 KAIAMLLAIWGFLSYIYQHY 354 (382)
Q Consensus 335 kiig~~L~l~G~~~y~y~~~ 354 (382)
.+++.++.+.|+.+.+-++-
T Consensus 21 LifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcc
Confidence 45566666767766666543
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=11.21 E-value=1.6e+02 Score=21.80 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 016786 335 KAIAMLLAIWGFLSYIYQHYL 355 (382)
Q Consensus 335 kiig~~L~l~G~~~y~y~~~~ 355 (382)
.+++.++.+.|+.+.+-++-+
T Consensus 22 LifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhHHHHHHHHHHHHHcCccc
Confidence 455666667777766665433
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=8.44 E-value=2.2e+02 Score=18.08 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=6.2
Q ss_pred HHHhhccchhhhhhh
Q 016786 348 SYIYQHYLDDYKSKT 362 (382)
Q Consensus 348 ~y~y~~~~~~~~~~~ 362 (382)
.|+.--.+..||.|+
T Consensus 16 fYFl~iRPQ~Kr~K~ 30 (37)
T 2rdd_B 16 FYFMILRPQQKRTKE 30 (37)
T ss_dssp HHHHTHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHH
Confidence 344433444444333
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=8.04 E-value=2.6e+02 Score=20.96 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 016786 335 KAIAMLLAIWGFLSYIYQHYL 355 (382)
Q Consensus 335 kiig~~L~l~G~~~y~y~~~~ 355 (382)
.+++.++.+.|+.+.+-++-+
T Consensus 24 LifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC--
T ss_pred chhHHHHHHHHHHHHHcCccc
Confidence 455666677777766665443
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=7.59 E-value=4.5e+02 Score=24.54 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHH--------HhcCcchHHHHHHHHHHHHHHHHHHhhccc
Q 016786 309 NVISTLSLPVIPILAVI--------FFHDKMNGLKAIAMLLAIWGFLSYIYQHYL 355 (382)
Q Consensus 309 ~vv~~~~lpl~~ilavi--------~fgE~~~~~kiig~~L~l~G~~~y~y~~~~ 355 (382)
++++++.+|++.+.+++ ..+.+..+.-++|+.+++.+...+.+.+..
T Consensus 283 Tiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fkrk~ 337 (339)
T 4ev6_A 283 TMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFRRSG 337 (339)
T ss_dssp HHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHHHcC
Done!