Query 016786
Match_columns 382
No_of_seqs 216 out of 387
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 03:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016786.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016786hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 11.7 3.4E+02 0.025 21.6 11.7 44 305-348 80-126 (222)
2 d1wpga4 f.33.1.1 (A:1-124,A:24 11.6 4.7E+02 0.034 23.1 13.8 14 76-89 371-384 (472)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 6.6 6E+02 0.044 20.6 26.6 26 44-69 154-179 (447)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 6.0 2.8E+02 0.021 21.7 4.7 28 322-349 82-109 (199)
5 d1ueka2 d.58.26.5 (A:149-268) 4.9 1.1E+02 0.0083 22.1 1.2 16 364-379 74-89 (120)
6 d1oj4a2 d.58.26.5 (A:164-283) 4.3 1.4E+02 0.0099 21.9 1.3 27 353-379 55-81 (120)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 4.1 3.4E+02 0.024 14.7 2.9 16 200-215 2-17 (27)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 3.8 3.7E+02 0.027 15.5 2.7 14 342-355 15-28 (34)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 3.8 4.3E+02 0.031 15.4 3.4 23 195-217 13-35 (37)
10 d1y5ic1 f.21.3.1 (C:1-225) Res 3.5 2.3E+02 0.017 22.8 2.3 25 334-358 93-117 (225)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=11.68 E-value=3.4e+02 Score=21.58 Aligned_cols=44 Identities=18% Similarity=0.021 Sum_probs=27.9
Q ss_pred hhhHHHHHHhhhHHHH---HHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 016786 305 SLFSNVISTLSLPVIP---ILAVIFFHDKMNGLKAIAMLLAIWGFLS 348 (382)
Q Consensus 305 sl~a~vv~~~~lpl~~---ilavi~fgE~~~~~kiig~~L~l~G~~~ 348 (382)
|....++..+.+|++. +.+..+++.+++....+|+++.+....-
T Consensus 80 S~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~ 126 (222)
T d1iwga8 80 SWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAK 126 (222)
T ss_dssp SSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhhhhh
Confidence 3445555555556553 4455577899999888888886644333
No 2
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.60 E-value=4.7e+02 Score=23.12 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=7.2
Q ss_pred HHHHHHhhHHHHHH
Q 016786 76 ATFVQSAGFPILLP 89 (382)
Q Consensus 76 ~t~vq~agfplll~ 89 (382)
...-||+.|-.+..
T Consensus 371 ~~~a~T~~F~~lv~ 384 (472)
T d1wpga4 371 APEPMTMALSVLVT 384 (472)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 34455666655443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.61 E-value=6e+02 Score=20.61 Aligned_cols=26 Identities=23% Similarity=0.019 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcC
Q 016786 44 VILYVVCLLVGQSAATLLGRLYYDKG 69 (382)
Q Consensus 44 ~~~~~~~~~~g~~~~~Ll~r~y~~~g 69 (382)
..+.....-+|...++++.-+.....
T Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 154 VSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred ccccccccchhhhhhhhhhhhHhhhh
Confidence 34445555666677777666555443
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.98 E-value=2.8e+02 Score=21.73 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=20.6
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHH
Q 016786 322 LAVIFFHDKMNGLKAIAMLLAIWGFLSY 349 (382)
Q Consensus 322 lavi~fgE~~~~~kiig~~L~l~G~~~y 349 (382)
....++|.+++....++..+++....-|
T Consensus 82 ~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 82 AVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 3344678899988888888877666655
No 5
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=4.94 E-value=1.1e+02 Score=22.07 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=12.3
Q ss_pred ccCcccccccCCcccc
Q 016786 364 ENKSKANEVSGSGSVI 379 (382)
Q Consensus 364 ~~~~~~~~~~~~~~~~ 379 (382)
+..+....-||||+.+
T Consensus 74 ~~g~~~~~mSGSGst~ 89 (120)
T d1ueka2 74 ALGLRGVLMSGSGSAF 89 (120)
T ss_dssp HTTCEEEEECTTSSCE
T ss_pred HhhhhheeecCCCCeE
Confidence 4457778899999864
No 6
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=4.32 E-value=1.4e+02 Score=21.92 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=14.4
Q ss_pred ccchhhhhhhcccCcccccccCCcccc
Q 016786 353 HYLDDYKSKTMENKSKANEVSGSGSVI 379 (382)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (382)
.|++-++-++.=.+.....-+|||+.+
T Consensus 55 ~~P~I~~~~~~L~~~g~~~MSGSGstv 81 (120)
T d1oj4a2 55 RFREVDAVLSWLLEYAPSRLTGTGACV 81 (120)
T ss_dssp HCHHHHHHHHHHTTTSCEEECTTSSCE
T ss_pred hCHHHHHHHHHHhhcccceecCCCCEE
Confidence 344444433333333445688888864
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.12 E-value=3.4e+02 Score=14.65 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 016786 200 VIGFLCTLGASATYSL 215 (382)
Q Consensus 200 ~iG~~l~l~Aa~~~al 215 (382)
++|.+.+-.|...|+.
T Consensus 2 vlgli~~tl~glf~aa 17 (27)
T d2e74g1 2 VLGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 4577777777777776
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.81 E-value=3.7e+02 Score=15.48 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhccc
Q 016786 342 AIWGFLSYIYQHYL 355 (382)
Q Consensus 342 ~l~G~~~y~y~~~~ 355 (382)
++.=+.+++|+.|.
T Consensus 15 vi~~vG~FfYGsYs 28 (34)
T d2axtj1 15 VIVIVGLFFYGAYA 28 (34)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred hHhheeeeeeeeec
Confidence 33335677888774
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.78 E-value=4.3e+02 Score=15.38 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=17.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH
Q 016786 195 SKGNYVIGFLCTLGASATYSLYL 217 (382)
Q Consensus 195 ~~~~~~iG~~l~l~Aa~~~al~~ 217 (382)
.+..-..|.+++..-+++|+-|.
T Consensus 13 NrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHh
Confidence 33345679999999999988764
No 10
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=3.55 E-value=2.3e+02 Score=22.83 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhh
Q 016786 334 LKAIAMLLAIWGFLSYIYQHYLDDY 358 (382)
Q Consensus 334 ~kiig~~L~l~G~~~y~y~~~~~~~ 358 (382)
...++.++++.|....+++++.+++
T Consensus 93 ~g~i~g~l~liG~~~ll~RR~~~~~ 117 (225)
T d1y5ic1 93 AGGASGVLCLIGGVLLLKRRLFSPR 117 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3456667777788888887766544
Done!