Query 016787
Match_columns 382
No_of_seqs 125 out of 1303
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00013 groEL chaperonin GroE 100.0 1.8E-79 3.9E-84 634.3 42.7 375 2-377 166-542 (542)
2 PRK12849 groEL chaperonin GroE 100.0 1.9E-79 4E-84 634.1 42.7 376 2-379 166-541 (542)
3 PRK12852 groEL chaperonin GroE 100.0 1.4E-78 3E-83 629.3 42.4 377 2-378 167-544 (545)
4 PRK14104 chaperonin GroEL; Pro 100.0 4.7E-78 1E-82 624.2 42.6 380 2-382 167-546 (546)
5 PRK12850 groEL chaperonin GroE 100.0 3.8E-77 8.2E-82 617.7 42.2 378 2-382 167-544 (544)
6 PRK12851 groEL chaperonin GroE 100.0 4.8E-76 1E-80 609.1 42.2 375 2-382 167-541 (541)
7 PTZ00114 Heat shock protein 60 100.0 5.7E-75 1.2E-79 603.1 40.9 362 2-363 178-543 (555)
8 cd03344 GroEL GroEL_like type 100.0 1.8E-74 3.9E-79 595.2 40.5 356 2-358 164-519 (520)
9 PLN03167 Chaperonin-60 beta su 100.0 3.5E-74 7.5E-79 599.1 40.1 365 2-366 221-587 (600)
10 TIGR02348 GroEL chaperonin Gro 100.0 1.5E-73 3.3E-78 589.1 40.2 358 2-361 165-523 (524)
11 CHL00093 groEL chaperonin GroE 100.0 1.5E-72 3.3E-77 582.3 38.7 359 2-362 166-527 (529)
12 KOG0356 Mitochondrial chaperon 100.0 8.4E-65 1.8E-69 501.1 25.8 361 1-364 179-541 (550)
13 KOG0361 Chaperonin complex com 100.0 1.1E-60 2.4E-65 453.0 21.5 313 10-378 197-542 (543)
14 cd03343 cpn60 cpn60 chaperonin 100.0 4.8E-59 1E-63 482.2 31.4 291 10-359 192-516 (517)
15 TIGR02339 thermosome_arch ther 100.0 7.6E-59 1.6E-63 480.6 31.4 290 10-358 197-518 (519)
16 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.2E-58 2.6E-63 479.8 31.8 296 12-361 191-527 (527)
17 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2.7E-58 5.8E-63 477.1 31.0 290 10-358 202-526 (526)
18 TIGR02347 chap_CCT_zeta T-comp 100.0 4.7E-58 1E-62 474.6 32.6 293 12-363 195-529 (531)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 9E-59 1.9E-63 475.8 26.3 287 10-360 189-483 (484)
20 TIGR02344 chap_CCT_gamma T-com 100.0 4.8E-58 1E-62 475.2 30.6 294 10-362 197-524 (525)
21 TIGR02343 chap_CCT_epsi T-comp 100.0 9.2E-58 2E-62 473.0 32.0 291 10-359 206-531 (532)
22 TIGR02340 chap_CCT_alpha T-com 100.0 1.4E-57 3E-62 472.5 33.2 299 11-363 194-533 (536)
23 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2.1E-57 4.6E-62 470.2 32.2 303 3-361 181-521 (522)
24 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.1E-57 4.5E-62 469.7 31.6 301 2-359 168-515 (515)
25 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.4E-57 9.5E-62 467.0 33.5 294 9-362 190-516 (517)
26 PTZ00212 T-complex protein 1 s 100.0 3E-57 6.6E-62 469.5 32.4 293 10-362 203-528 (533)
27 TIGR02346 chap_CCT_theta T-com 100.0 2.4E-57 5.2E-62 469.9 30.9 297 13-369 199-529 (531)
28 TIGR02342 chap_CCT_delta T-com 100.0 1.1E-56 2.3E-61 464.0 31.6 292 11-359 188-516 (517)
29 TIGR02341 chap_CCT_beta T-comp 100.0 7E-56 1.5E-60 457.8 33.9 293 11-363 193-518 (519)
30 TIGR02345 chap_CCT_eta T-compl 100.0 5.5E-56 1.2E-60 459.3 31.0 295 10-360 194-520 (522)
31 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.4E-55 3E-60 451.1 30.3 276 10-359 186-471 (472)
32 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.2E-55 2.5E-60 452.6 27.5 273 10-358 197-479 (480)
33 COG0459 GroL Chaperonin GroEL 100.0 4E-55 8.8E-60 448.4 31.1 311 2-364 168-518 (524)
34 cd00309 chaperonin_type_I_II c 100.0 1.6E-53 3.4E-58 435.8 31.1 276 7-358 179-464 (464)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.3E-52 4.9E-57 428.8 29.2 292 11-361 162-485 (485)
36 KOG0363 Chaperonin complex com 100.0 5.2E-49 1.1E-53 371.4 21.2 298 9-366 195-525 (527)
37 KOG0358 Chaperonin complex com 100.0 3.2E-47 6.9E-52 360.8 18.4 291 11-359 205-533 (534)
38 KOG0362 Chaperonin complex com 100.0 1.5E-44 3.4E-49 352.6 26.9 298 10-368 199-529 (537)
39 KOG0364 Chaperonin complex com 100.0 5.3E-46 1.1E-50 357.8 16.2 295 10-363 197-524 (527)
40 KOG0357 Chaperonin complex com 100.0 6.8E-46 1.5E-50 347.2 14.3 243 68-361 144-397 (400)
41 KOG0360 Chaperonin complex com 100.0 4.7E-45 1E-49 354.2 18.4 302 10-366 200-542 (545)
42 KOG0359 Chaperonin complex com 100.0 7.2E-41 1.6E-45 322.0 15.6 287 14-359 194-514 (520)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 5.2E-28 1.1E-32 229.5 20.2 177 10-245 52-254 (261)
44 cd03333 chaperonin_like chaper 99.9 2E-26 4.3E-31 211.9 18.5 162 7-244 43-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.4 3.8E-12 8.3E-17 139.1 13.1 185 11-254 367-577 (1598)
46 COG0459 GroL Chaperonin GroEL 96.1 0.0007 1.5E-08 70.6 -2.5 94 72-170 237-330 (524)
47 KOG3158 HSP90 co-chaperone p23 58.4 5 0.00011 35.6 1.1 13 370-382 136-148 (180)
48 smart00574 POX domain associat 47.5 87 0.0019 26.9 6.9 58 193-263 68-126 (140)
49 PF03102 NeuB: NeuB family; I 45.5 29 0.00063 32.7 4.2 73 65-146 55-127 (241)
50 COG4148 ModC ABC-type molybdat 44.1 27 0.00059 33.9 3.7 45 48-92 142-192 (352)
51 cd03213 ABCG_EPDR ABCG transpo 43.4 50 0.0011 29.5 5.3 47 50-96 127-178 (194)
52 TIGR01166 cbiO cobalt transpor 41.8 29 0.00063 30.7 3.5 39 51-89 144-187 (190)
53 cd03232 ABC_PDR_domain2 The pl 41.2 38 0.00083 30.1 4.2 48 49-96 123-175 (192)
54 PTZ00009 heat shock 70 kDa pro 40.3 2.6E+02 0.0056 30.3 11.0 13 9-21 196-208 (653)
55 COG4555 NatA ABC-type Na+ tran 40.3 29 0.00064 32.1 3.2 43 47-89 146-193 (245)
56 TIGR03659 IsdE heme ABC transp 37.9 64 0.0014 30.7 5.4 58 72-134 84-141 (289)
57 cd03234 ABCG_White The White s 37.0 49 0.0011 30.2 4.3 47 51-97 160-211 (226)
58 cd03216 ABC_Carb_Monos_I This 36.8 37 0.0008 29.4 3.2 42 49-90 97-143 (163)
59 PF07526 POX: Associated with 36.7 1.3E+02 0.0028 25.9 6.5 58 193-263 68-126 (140)
60 COG1121 ZnuC ABC-type Mn/Zn tr 36.4 46 0.001 31.6 4.0 44 49-92 154-202 (254)
61 PRK13538 cytochrome c biogenes 35.9 44 0.00095 30.0 3.7 38 51-88 146-188 (204)
62 COG1129 MglA ABC-type sugar tr 35.2 62 0.0013 33.9 5.0 43 50-92 417-464 (500)
63 TIGR02673 FtsE cell division A 35.0 43 0.00094 30.1 3.5 40 50-89 153-197 (214)
64 cd03262 ABC_HisP_GlnQ_permease 34.8 40 0.00087 30.3 3.3 40 50-89 151-195 (213)
65 TIGR03771 anch_rpt_ABC anchore 34.8 49 0.0011 30.2 3.9 40 50-89 129-173 (223)
66 TIGR00960 3a0501s02 Type II (G 33.9 43 0.00094 30.2 3.4 40 50-89 154-198 (216)
67 PRK13539 cytochrome c biogenes 33.6 51 0.0011 29.7 3.7 40 50-89 143-187 (207)
68 cd03218 ABC_YhbG The ABC trans 33.2 53 0.0012 29.9 3.9 39 51-89 150-193 (232)
69 cd03246 ABCC_Protease_Secretio 33.1 51 0.0011 28.7 3.6 42 49-90 111-157 (173)
70 PRK13543 cytochrome c biogenes 32.8 49 0.0011 29.9 3.5 39 51-89 154-197 (214)
71 PF01113 DapB_N: Dihydrodipico 32.8 1.4E+02 0.003 24.7 6.0 42 56-99 70-111 (124)
72 cd01143 YvrC Periplasmic bindi 32.6 1.2E+02 0.0027 26.3 6.0 57 72-133 53-110 (195)
73 PRK11264 putative amino-acid A 32.3 47 0.001 30.7 3.4 39 51-89 161-204 (250)
74 cd03235 ABC_Metallic_Cations A 32.1 48 0.001 29.8 3.3 40 51-90 149-193 (213)
75 cd03225 ABC_cobalt_CbiO_domain 31.9 50 0.0011 29.6 3.4 40 50-89 150-194 (211)
76 cd03226 ABC_cobalt_CbiO_domain 31.8 45 0.00098 29.8 3.1 41 50-90 142-187 (205)
77 cd03219 ABC_Mj1267_LivG_branch 31.5 50 0.0011 30.2 3.4 40 51-90 160-204 (236)
78 cd03215 ABC_Carb_Monos_II This 31.2 61 0.0013 28.5 3.8 40 50-89 120-164 (182)
79 PRK13600 putative ribosomal pr 31.1 2.1E+02 0.0046 22.3 6.3 54 71-134 21-74 (84)
80 PRK10619 histidine/lysine/argi 31.0 49 0.0011 30.9 3.3 39 51-89 169-212 (257)
81 TIGR03740 galliderm_ABC gallid 30.7 53 0.0011 29.8 3.4 38 51-88 141-183 (223)
82 TIGR01978 sufC FeS assembly AT 30.7 53 0.0011 30.1 3.4 39 51-89 161-204 (243)
83 cd03268 ABC_BcrA_bacitracin_re 30.6 56 0.0012 29.3 3.5 39 51-89 143-186 (208)
84 PRK09493 glnQ glutamine ABC tr 30.5 56 0.0012 30.0 3.6 39 51-89 153-196 (240)
85 PRK04247 hypothetical protein; 30.4 1.4E+02 0.0031 28.1 6.1 47 64-114 187-236 (238)
86 PRK11614 livF leucine/isoleuci 30.3 51 0.0011 30.2 3.2 38 51-88 154-196 (237)
87 PRK00129 upp uracil phosphorib 30.2 2.8E+02 0.006 25.2 8.0 66 47-112 119-185 (209)
88 PRK10908 cell division protein 30.0 55 0.0012 29.7 3.4 39 51-89 154-197 (222)
89 cd03292 ABC_FtsE_transporter F 29.9 59 0.0013 29.2 3.5 40 50-89 152-196 (214)
90 PRK09580 sufC cysteine desulfu 29.9 54 0.0012 30.2 3.3 41 50-90 161-206 (248)
91 cd03255 ABC_MJ0796_Lo1CDE_FtsE 29.7 66 0.0014 29.0 3.8 43 49-91 155-203 (218)
92 cd03214 ABC_Iron-Siderophores_ 29.6 61 0.0013 28.4 3.5 42 49-90 112-159 (180)
93 PRK06683 hypothetical protein; 29.5 2.1E+02 0.0045 22.1 6.0 55 71-135 19-73 (82)
94 PF07818 HCNGP: HCNGP-like pro 29.4 88 0.0019 25.1 4.0 57 285-349 30-86 (96)
95 cd03265 ABC_DrrA DrrA is the A 28.8 62 0.0013 29.3 3.5 40 50-89 147-192 (220)
96 TIGR01091 upp uracil phosphori 28.7 3.2E+02 0.007 24.8 8.2 65 47-111 117-182 (207)
97 PRK15056 manganese/iron transp 28.7 59 0.0013 30.7 3.5 41 50-90 158-203 (272)
98 cd03269 ABC_putative_ATPase Th 28.5 55 0.0012 29.4 3.1 40 50-89 144-188 (210)
99 PRK10895 lipopolysaccharide AB 28.5 62 0.0014 29.7 3.5 38 51-88 154-196 (241)
100 cd03261 ABC_Org_Solvent_Resist 28.4 61 0.0013 29.7 3.4 40 51-90 153-198 (235)
101 PRK13601 putative L7Ae-like ri 28.4 2.3E+02 0.0049 22.0 6.0 54 71-134 16-69 (82)
102 TIGR02324 CP_lyasePhnL phospho 28.4 67 0.0014 29.1 3.6 38 51-88 166-208 (224)
103 COG3962 Acetolactate synthase 28.2 35 0.00075 35.3 1.7 39 228-266 216-254 (617)
104 cd03229 ABC_Class3 This class 27.9 58 0.0013 28.5 3.0 40 50-89 116-161 (178)
105 TIGR03608 L_ocin_972_ABC putat 27.9 62 0.0013 28.8 3.3 39 51-89 151-194 (206)
106 cd03297 ABC_ModC_molybdenum_tr 27.5 60 0.0013 29.3 3.1 41 50-90 147-193 (214)
107 cd03224 ABC_TM1139_LivF_branch 27.3 69 0.0015 28.9 3.5 39 51-89 149-192 (222)
108 PRK10982 galactose/methyl gala 27.2 82 0.0018 32.5 4.4 42 50-91 407-453 (491)
109 PRK11124 artP arginine transpo 27.1 64 0.0014 29.7 3.3 39 51-89 158-201 (242)
110 cd01141 TroA_d Periplasmic bin 27.1 1.8E+02 0.004 25.2 6.2 37 72-112 62-99 (186)
111 cd03266 ABC_NatA_sodium_export 26.9 63 0.0014 29.1 3.2 40 50-89 152-196 (218)
112 cd03230 ABC_DR_subfamily_A Thi 26.9 66 0.0014 28.0 3.2 40 50-89 111-155 (173)
113 cd03238 ABC_UvrA The excision 26.8 68 0.0015 28.5 3.2 42 50-91 103-151 (176)
114 TIGR02770 nickel_nikD nickel i 26.7 62 0.0013 29.6 3.1 39 51-89 142-186 (230)
115 CHL00131 ycf16 sulfate ABC tra 26.6 65 0.0014 29.8 3.2 39 51-89 168-211 (252)
116 PF14681 UPRTase: Uracil phosp 26.5 1.4E+02 0.003 27.2 5.4 66 47-112 116-184 (207)
117 TIGR03873 F420-0_ABC_ATP propo 26.4 72 0.0016 29.7 3.5 41 50-90 153-198 (256)
118 cd03256 ABC_PhnC_transporter A 26.4 69 0.0015 29.3 3.4 40 51-90 161-206 (241)
119 cd03298 ABC_ThiQ_thiamine_tran 26.2 72 0.0016 28.6 3.4 40 50-89 144-189 (211)
120 cd03217 ABC_FeS_Assembly ABC-t 26.2 67 0.0014 28.8 3.2 41 50-90 120-165 (200)
121 KOG2663 Acetolactate synthase, 26.1 63 0.0014 30.7 2.9 26 213-239 122-147 (309)
122 COG3845 ABC-type uncharacteriz 26.1 1E+02 0.0022 32.1 4.6 44 49-92 155-203 (501)
123 COG0411 LivG ABC-type branched 26.0 73 0.0016 30.1 3.4 39 51-89 166-210 (250)
124 PRK13638 cbiO cobalt transport 25.9 66 0.0014 30.3 3.2 39 51-89 153-196 (271)
125 cd03257 ABC_NikE_OppD_transpor 25.7 74 0.0016 28.8 3.4 39 51-89 162-206 (228)
126 TIGR02315 ABC_phnC phosphonate 25.5 78 0.0017 29.1 3.6 41 50-90 161-207 (243)
127 PRK11629 lolD lipoprotein tran 25.4 74 0.0016 29.1 3.4 39 51-89 162-206 (233)
128 PRK13540 cytochrome c biogenes 25.2 79 0.0017 28.2 3.4 39 50-88 143-186 (200)
129 cd03259 ABC_Carb_Solutes_like 25.0 74 0.0016 28.6 3.3 40 50-89 146-191 (213)
130 PRK11231 fecE iron-dicitrate t 24.9 80 0.0017 29.4 3.5 39 51-89 155-198 (255)
131 PRK13541 cytochrome c biogenes 24.9 86 0.0019 27.8 3.6 38 51-88 140-182 (195)
132 COG1712 Predicted dinucleotide 24.8 2.2E+02 0.0047 26.9 6.1 83 64-171 69-165 (255)
133 cd03231 ABC_CcmA_heme_exporter 24.8 95 0.0021 27.7 3.9 11 51-61 142-152 (201)
134 TIGR01189 ccmA heme ABC export 24.4 87 0.0019 27.8 3.6 38 51-88 144-186 (198)
135 PRK09536 btuD corrinoid ABC tr 24.3 69 0.0015 32.5 3.1 42 50-91 155-201 (402)
136 TIGR01277 thiQ thiamine ABC tr 24.2 80 0.0017 28.4 3.3 40 50-89 144-189 (213)
137 PRK13647 cbiO cobalt transport 24.1 76 0.0016 30.1 3.2 39 51-89 155-198 (274)
138 PRK13636 cbiO cobalt transport 24.1 82 0.0018 30.0 3.5 39 51-89 158-202 (283)
139 PRK11288 araG L-arabinose tran 24.0 82 0.0018 32.7 3.7 40 50-89 412-456 (501)
140 TIGR02345 chap_CCT_eta T-compl 24.0 25 0.00054 36.9 -0.1 60 79-139 247-315 (522)
141 COG1137 YhbG ABC-type (unclass 23.9 1.2E+02 0.0027 28.1 4.3 39 51-89 156-199 (243)
142 TIGR03569 NeuB_NnaB N-acetylne 23.8 2.2E+02 0.0047 28.1 6.4 73 65-146 75-147 (329)
143 COG0049 RpsG Ribosomal protein 23.7 1.4E+02 0.0031 25.9 4.5 36 268-307 32-67 (148)
144 PRK10575 iron-hydroxamate tran 23.7 82 0.0018 29.5 3.4 40 50-89 163-208 (265)
145 PRK13549 xylose transporter AT 23.6 83 0.0018 32.7 3.7 41 50-90 421-466 (506)
146 cd03296 ABC_CysA_sulfate_impor 23.6 78 0.0017 29.1 3.2 39 51-89 153-197 (239)
147 PRK10771 thiQ thiamine transpo 23.6 88 0.0019 28.6 3.5 38 51-88 146-189 (232)
148 cd03301 ABC_MalK_N The N-termi 23.4 79 0.0017 28.4 3.1 40 50-89 146-191 (213)
149 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 23.4 80 0.0017 28.8 3.2 38 51-88 159-201 (224)
150 TIGR01188 drrA daunorubicin re 23.4 73 0.0016 30.6 3.0 41 50-90 140-185 (302)
151 PRK13643 cbiO cobalt transport 23.4 86 0.0019 29.9 3.5 10 78-87 161-170 (288)
152 TIGR01184 ntrCD nitrate transp 23.4 82 0.0018 28.9 3.2 39 51-89 131-175 (230)
153 PRK13602 putative ribosomal pr 23.4 2.8E+02 0.0062 21.3 5.8 51 71-135 19-73 (82)
154 PRK11058 GTPase HflX; Provisio 23.2 3.5E+02 0.0077 27.6 8.1 47 191-240 127-176 (426)
155 PRK13641 cbiO cobalt transport 23.0 80 0.0017 30.1 3.2 38 51-88 162-204 (287)
156 cd03290 ABCC_SUR1_N The SUR do 22.6 88 0.0019 28.2 3.3 40 51-90 157-203 (218)
157 cd03258 ABC_MetN_methionine_tr 22.6 92 0.002 28.4 3.4 40 50-89 156-201 (233)
158 PRK13537 nodulation ABC transp 22.6 78 0.0017 30.6 3.0 41 50-90 154-199 (306)
159 TIGR02323 CP_lyasePhnK phospho 22.4 82 0.0018 29.2 3.1 11 51-61 165-175 (253)
160 TIGR01288 nodI ATP-binding ABC 22.3 80 0.0017 30.4 3.1 41 50-90 151-196 (303)
161 TIGR02769 nickel_nikE nickel i 22.2 88 0.0019 29.3 3.3 10 52-61 168-177 (265)
162 PRK15439 autoinducer 2 ABC tra 22.1 1E+02 0.0022 32.1 3.9 41 50-90 419-464 (510)
163 PF01497 Peripla_BP_2: Peripla 22.1 3.4E+02 0.0074 24.2 7.1 59 72-134 53-112 (238)
164 TIGR02211 LolD_lipo_ex lipopro 22.0 1E+02 0.0022 27.8 3.5 41 50-90 157-203 (221)
165 cd03253 ABCC_ATM1_transporter 21.7 76 0.0017 29.0 2.7 38 51-89 154-196 (236)
166 PRK10247 putative ABC transpor 21.7 1.1E+02 0.0023 27.9 3.7 41 50-90 153-199 (225)
167 PRK09984 phosphonate/organopho 21.6 95 0.0021 29.0 3.4 11 51-61 169-179 (262)
168 PRK14250 phosphate ABC transpo 21.5 99 0.0021 28.5 3.4 38 51-88 148-191 (241)
169 PRK13649 cbiO cobalt transport 21.4 85 0.0018 29.7 3.0 10 78-87 162-171 (280)
170 TIGR03410 urea_trans_UrtE urea 21.4 1.1E+02 0.0023 27.9 3.6 38 51-88 148-191 (230)
171 PRK13536 nodulation factor exp 21.3 84 0.0018 31.0 3.0 41 50-90 188-233 (340)
172 PRK09700 D-allose transporter 21.3 99 0.0022 32.1 3.7 39 51-89 426-469 (510)
173 PRK11831 putative ABC transpor 21.2 94 0.002 29.3 3.2 10 52-61 161-170 (269)
174 TIGR03005 ectoine_ehuA ectoine 21.2 1E+02 0.0022 28.6 3.4 39 51-89 163-207 (252)
175 PRK14736 atpC F0F1 ATP synthas 21.2 3.9E+02 0.0084 22.6 6.7 52 158-209 69-126 (133)
176 PLN02775 Probable dihydrodipic 21.2 3.7E+02 0.0081 26.0 7.3 71 52-130 79-149 (286)
177 PRK13642 cbiO cobalt transport 21.2 89 0.0019 29.6 3.1 41 51-91 157-203 (277)
178 PRK13652 cbiO cobalt transport 21.2 1E+02 0.0022 29.2 3.4 38 51-88 154-197 (277)
179 PRK13639 cbiO cobalt transport 21.0 1.1E+02 0.0025 28.8 3.8 39 51-89 154-197 (275)
180 PRK13644 cbiO cobalt transport 21.0 93 0.002 29.4 3.2 39 51-89 153-196 (274)
181 COG1433 Uncharacterized conser 21.0 3.7E+02 0.0081 22.5 6.4 32 70-102 56-87 (121)
182 TIGR00968 3a0106s01 sulfate AB 21.0 97 0.0021 28.5 3.2 39 51-89 147-191 (237)
183 cd03293 ABC_NrtD_SsuB_transpor 21.0 1E+02 0.0022 27.8 3.3 39 51-89 148-192 (220)
184 PRK11300 livG leucine/isoleuci 21.0 97 0.0021 28.7 3.3 39 51-89 170-214 (255)
185 PRK09544 znuC high-affinity zi 20.9 97 0.0021 29.0 3.2 40 50-89 136-181 (251)
186 TIGR03864 PQQ_ABC_ATP ABC tran 20.8 1.1E+02 0.0024 28.1 3.5 10 52-61 150-159 (236)
187 cd03295 ABC_OpuCA_Osmoprotecti 20.7 1E+02 0.0022 28.3 3.3 38 51-88 152-195 (242)
188 PRK03379 vitamin B12-transport 20.7 2.1E+02 0.0045 26.7 5.5 57 72-133 65-122 (260)
189 PRK15112 antimicrobial peptide 20.6 92 0.002 29.3 3.0 9 79-87 167-175 (267)
190 PRK10584 putative ABC transpor 20.6 1E+02 0.0022 28.0 3.3 40 51-90 163-208 (228)
191 PRK13651 cobalt transporter AT 20.6 98 0.0021 30.0 3.3 38 51-88 182-224 (305)
192 PF10593 Z1: Z1 domain; Inter 20.5 1.4E+02 0.0031 27.9 4.2 73 58-154 89-161 (239)
193 PF04864 Alliinase_C: Allinase 20.4 82 0.0018 31.4 2.6 38 221-258 42-81 (363)
194 PRK13548 hmuV hemin importer A 20.3 1.2E+02 0.0025 28.4 3.6 39 52-90 158-202 (258)
195 COG4586 ABC-type uncharacteriz 20.3 1.5E+02 0.0033 28.8 4.3 44 50-93 172-221 (325)
196 PRK13546 teichoic acids export 20.3 94 0.002 29.4 3.0 10 78-87 160-169 (264)
197 cd01138 FeuA Periplasmic bindi 20.3 2.8E+02 0.0061 25.2 6.2 55 72-134 59-113 (248)
198 PRK03298 hypothetical protein; 20.3 2.4E+02 0.0053 26.2 5.5 42 62-103 159-204 (224)
199 PRK10253 iron-enterobactin tra 20.3 1E+02 0.0023 28.8 3.3 41 50-90 159-205 (265)
200 PF10805 DUF2730: Protein of u 20.2 1.2E+02 0.0026 24.7 3.2 36 177-212 47-82 (106)
201 TIGR02633 xylG D-xylose ABC tr 20.1 1.1E+02 0.0024 31.7 3.7 39 51-89 420-463 (500)
202 cd03236 ABC_RNaseL_inhibitor_d 20.1 97 0.0021 29.1 3.1 39 51-89 156-199 (255)
203 PRK11701 phnK phosphonate C-P 20.0 99 0.0021 28.8 3.1 9 79-87 169-177 (258)
No 1
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-79 Score=634.27 Aligned_cols=375 Identities=59% Similarity=0.935 Sum_probs=356.9
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
+.+|++|.|.++.+.+..|++++++|++|+++|.+|+|+++++++++.++||+||++|++|++++++.++++++++.|+|
T Consensus 166 ~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~ 245 (542)
T PRK00013 166 EKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKP 245 (542)
T ss_pred HHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCC
Confidence 46788899999887766677899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 161 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~ 161 (382)
|||++++|++.|+++|..|+++++++|++||+|+|++.++++|+|||++||+++++++.+++++++++++||+|+.++++
T Consensus 246 lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~ 325 (542)
T PRK00013 246 LLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVT 325 (542)
T ss_pred EEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999777777999999999999999999
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
+++++||+++++++.+..|+++++.+++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus 326 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~a 405 (542)
T PRK00013 326 KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAA 405 (542)
T ss_pred cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCc
Q 016787 242 VEEGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGE 320 (382)
Q Consensus 242 ~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~ 320 (382)
+++|+|||||++|+++|..|+++ .+ ++++|+++++|++||+.||++||+|||+|+.+++++|++.|++++|+|+.+|+
T Consensus 406 l~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~ 484 (542)
T PRK00013 406 VEEGIVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGE 484 (542)
T ss_pred HHcCcccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCc
Confidence 99999999999999999999988 44 78999999999999999999999999999999999999988888999999999
Q ss_pred cccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCC-CCCCCCCC
Q 016787 321 YVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG-GMGGMGGM 377 (382)
Q Consensus 321 i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~~ 377 (382)
+.||++.|||||+.||.++|+.|+++|++||+||++|..+|++.+..|. |.||||||
T Consensus 485 ~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~ 542 (542)
T PRK00013 485 YVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPMGGGGMGGM 542 (542)
T ss_pred eeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999887666544 66777766
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.9e-79 Score=634.14 Aligned_cols=376 Identities=62% Similarity=0.979 Sum_probs=358.5
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
.++|++|.|.+++|++++|++++++|++|+++|.+|+|+++.++|++.++||+||++|++|++++++.++++++.+.++|
T Consensus 166 ~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~ 245 (542)
T PRK12849 166 EKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKP 245 (542)
T ss_pred HHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCC
Confidence 45788999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 161 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~ 161 (382)
|||++++|+|.|+++|..|++++.++|++||+|+|+++++++|+|||++|||++++++.+..++++++++||+|+.|+++
T Consensus 246 lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~ 325 (542)
T PRK12849 246 LLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTIT 325 (542)
T ss_pred EEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999877777999999999999999999
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
+++++++++|++++++..|+++++.+++.+.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus 326 ~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a 405 (542)
T PRK12849 326 KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAA 405 (542)
T ss_pred eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016787 242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY 321 (382)
Q Consensus 242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i 321 (382)
+++|||||||++|+++|..|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.| .++|||+.+|++
T Consensus 406 ~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~ 484 (542)
T PRK12849 406 VEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEY 484 (542)
T ss_pred HHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCcc
Confidence 9999999999999999999999883388999999999999999999999999999999999999877 689999999999
Q ss_pred ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCC
Q 016787 322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGG 379 (382)
Q Consensus 322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~ 379 (382)
.||++.|||||+.+|.++|+.|+++|++|||||++|+.+|++..+ |++||||||||-
T Consensus 485 ~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~-~~~~~~~~~~~~ 541 (542)
T PRK12849 485 GDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP-PGGMGGMGGMGH 541 (542)
T ss_pred ccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC-CCCCCCCCCCCC
Confidence 999999999999999999999999999999999999998866544 577777777764
No 3
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.4e-78 Score=629.30 Aligned_cols=377 Identities=60% Similarity=0.962 Sum_probs=358.1
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
+++|++|+|.+..|++..+++++++|+.|+++|.+|||++++++|+.+++||+||++|++|+++++++++++++.++++|
T Consensus 167 ~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~ 246 (545)
T PRK12852 167 QKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKP 246 (545)
T ss_pred HHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcC
Confidence 46899999999999998777899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 161 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~ 161 (382)
|||++++|+++|+++|..|++++.++|+|||+|+||++++++|+|||++|||++++++.+.+++++++++||+|+.++++
T Consensus 247 lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~ 326 (545)
T PRK12852 247 LLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVID 326 (545)
T ss_pred EEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999777777999999999999999999
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
++++++++++++++.++.|+++++.+++++.++|++++|++|++||+++++||+|||+|+.+++|++|+++||+|+++++
T Consensus 327 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a 406 (545)
T PRK12852 327 KENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAA 406 (545)
T ss_pred ccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016787 242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY 321 (382)
Q Consensus 242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i 321 (382)
+++|||||||++|+++++.|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.|++++|||+.+|++
T Consensus 407 ~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~ 486 (545)
T PRK12852 407 VQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEY 486 (545)
T ss_pred HhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCc
Confidence 99999999999999999999998766778999999999999999999999999999999999999888899999999999
Q ss_pred ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCC-CCCCCCCCC
Q 016787 322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG-GMGGMGGMG 378 (382)
Q Consensus 322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~~~ 378 (382)
+||++.|||||+.||.++|+.|+|+|++|||||++|..+|++...++. ++|+|||||
T Consensus 487 ~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~ 544 (545)
T PRK12852 487 VDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAGGGMGGMG 544 (545)
T ss_pred ccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999998877655533 444555554
No 4
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=4.7e-78 Score=624.16 Aligned_cols=380 Identities=58% Similarity=0.946 Sum_probs=363.3
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
+++|.+|+|.+..+++++|++++++|++|+++|.+|||+++++.++.++++|+||++|.+++++++++++++++.+.++|
T Consensus 167 ~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~ 246 (546)
T PRK14104 167 KKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKP 246 (546)
T ss_pred HHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcC
Confidence 57899999999999988778899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 161 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~ 161 (382)
|||++++|+++|+++|..|++++.++|+|||+|+||+.++++|+|||++|||++++++.+..++++++++||+|++++++
T Consensus 247 lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~ 326 (546)
T PRK14104 247 LVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMID 326 (546)
T ss_pred EEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEc
Confidence 99999999999999999999999899999999999999999999999999999999988888999999999999999999
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
+++++++++|++++.++.|+++++.+++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus 327 ~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~a 406 (546)
T PRK14104 327 KENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAA 406 (546)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016787 242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY 321 (382)
Q Consensus 242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i 321 (382)
+++|||||||++|++++..|+++...++++++++++|++||+.||++||+|||+|+.+++.+|++.|.+++|+|+.+|++
T Consensus 407 i~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~ 486 (546)
T PRK14104 407 VEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEY 486 (546)
T ss_pred HHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCce
Confidence 99999999999999999999988544789999999999999999999999999999999999988777789999999999
Q ss_pred ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCCCCC
Q 016787 322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY 382 (382)
Q Consensus 322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (382)
.||++.|||||+.||.++|++|+++|++|||||++|..+|++....| .|+.|||||+|||
T Consensus 487 ~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~-~~~~~~~~~~~~~ 546 (546)
T PRK14104 487 GNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGP-AMPPGGGMGGMDF 546 (546)
T ss_pred eehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCC-CCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999998887665544 6667789999997
No 5
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.8e-77 Score=617.65 Aligned_cols=378 Identities=62% Similarity=0.970 Sum_probs=354.1
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
..+|++|.|.+..+....|++++++|++|+++|.+|+|+++.++++.+++||+||++|++|++.+++.+++++++++|+|
T Consensus 167 ~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~ 246 (544)
T PRK12850 167 DKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRP 246 (544)
T ss_pred HHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCC
Confidence 45788999999888777778899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 161 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~ 161 (382)
|||++++|+|+++++|..|++++.++++|||+|+|+++++++|+|||++||+++++++.+++++++++++||+|++|+++
T Consensus 247 lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~ 326 (544)
T PRK12850 247 LLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLIT 326 (544)
T ss_pred EEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999766667999999999999999999
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
++++++|++|++++++..|+.+++.+++.+.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus 327 ~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a 406 (544)
T PRK12850 327 KENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAA 406 (544)
T ss_pred eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016787 242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY 321 (382)
Q Consensus 242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i 321 (382)
+++|||||||++|++++..|+++...++++|+++++|++||+.||++||+|||+|+.+++++|++.| .++|+|+.+|++
T Consensus 407 ~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~ 485 (544)
T PRK12850 407 VEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEY 485 (544)
T ss_pred HhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcc
Confidence 9999999999999999999998833378999999999999999999999999999999999999876 579999999999
Q ss_pred ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCCCCC
Q 016787 322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY 382 (382)
Q Consensus 322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (382)
.||++.|||||+.||.++|+.|+++|++|||||++|..+|++.|++ + .|..||||||-|
T Consensus 486 ~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~-~-~~~~~~~~~~~~ 544 (544)
T PRK12850 486 GDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAA-A-AGPGPGMGGMGY 544 (544)
T ss_pred cchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCC-C-CCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999988775555 3 222344555444
No 6
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.8e-76 Score=609.06 Aligned_cols=375 Identities=62% Similarity=0.960 Sum_probs=353.6
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
+++|++|.|.+..+....+++++++|++|+++|.+|+|+++.++|+++++||+||++|+++++.+++.++++++.++++|
T Consensus 167 ~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~ 246 (541)
T PRK12851 167 EKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKP 246 (541)
T ss_pred HHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcC
Confidence 46788999888877666677899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 161 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~ 161 (382)
|||++++|++.++++|..|++++.++|+|||+|+||++++++|+|||++|||++++++.+++++++++++||+|+.|+++
T Consensus 247 lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~ 326 (541)
T PRK12851 247 LLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVE 326 (541)
T ss_pred EEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999776667999999999999999999
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
+++|+++++|++++++..|+++++.+++.+.+++++++|++|++||+|+++||+|||+|+.+++|++|+++||+++++++
T Consensus 327 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a 406 (541)
T PRK12851 327 KENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAA 406 (541)
T ss_pred cceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016787 242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY 321 (382)
Q Consensus 242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i 321 (382)
+++|||||||++|+++|..|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.| .++|+|+.+|++
T Consensus 407 l~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~ 485 (541)
T PRK12851 407 VEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEY 485 (541)
T ss_pred HHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCc
Confidence 9999999999999999999998876678999999999999999999999999999999999999887 479999999999
Q ss_pred ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCCCCCCCCCCCCCCC
Q 016787 322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY 382 (382)
Q Consensus 322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (382)
+||++.|||||+.||.++|+.|+|+|++|||||++|+.+|++.|++|-.||| ||||
T Consensus 486 ~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~~-----~~~~ 541 (541)
T PRK12851 486 GDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGG-----GMDF 541 (541)
T ss_pred cchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCCCCc-----ccCC
Confidence 9999999999999999999999999999999999999998776655333322 6665
No 7
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=5.7e-75 Score=603.09 Aligned_cols=362 Identities=66% Similarity=1.025 Sum_probs=348.4
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
+++|++|+|.+++|++++|++++++|++|+++|.+|+|+++.++|+++++||+||++|++|+++++++++++++++.++|
T Consensus 178 ~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~ 257 (555)
T PTZ00114 178 DKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRP 257 (555)
T ss_pred HHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCC
Confidence 46899999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccC-CCCccccCCcCCCceeeEEEE
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE-LGMDLEKVNLDMLGTCKKVTI 160 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~-~~~~l~~l~~~~lG~~~~v~i 160 (382)
|||++++|+++|+++|..|++++.++|++||+|++|++++++|+|||++||++++++. .+..++++++++||+|++|++
T Consensus 258 llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~ 337 (555)
T PTZ00114 258 LLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTV 337 (555)
T ss_pred EEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 666778899999999999999
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHH
Q 016787 161 SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~ 240 (382)
+++++++++++++++.|+.|+.+++.+++.+.+++++++|++|++||+++++||+|||+|+.+++|++|+++||++++++
T Consensus 338 ~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~ 417 (555)
T PTZ00114 338 TKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRA 417 (555)
T ss_pred EeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccccchHHHHHHHHHHHHhcc--C-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCC
Q 016787 241 AVEEGIVPGGGVALLYAAKELEKLST--A-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAA 317 (382)
Q Consensus 241 a~~~gvvpGGGa~e~~ls~~L~~~~~--~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~ 317 (382)
++++|||||||++|+++|..|++++. . ++++|+++++|++||+.||++||+|||+|+.+++++|++..++++|||+.
T Consensus 418 a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~ 497 (555)
T PTZ00114 418 AVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQ 497 (555)
T ss_pred HHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCC
Confidence 99989999999999999999998875 3 68999999999999999999999999999999999998744678999999
Q ss_pred CCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016787 318 KGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 363 (382)
Q Consensus 318 ~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~ 363 (382)
+|++.||++.|||||+.||.++|+.|+++|++||+||++|...|++
T Consensus 498 ~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 498 TGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred CCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999998776
No 8
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.8e-74 Score=595.19 Aligned_cols=356 Identities=64% Similarity=1.007 Sum_probs=344.7
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
.++|.+|.|.+.+|++++|++++++|++|+++|.+|+|++++++|+++++||+||++|+++++++++.++++++.+.|+|
T Consensus 164 ~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~ 243 (520)
T cd03344 164 EKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRP 243 (520)
T ss_pred HHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 45788999999999999998899999999999999999999888999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 161 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~ 161 (382)
|||++++|+++++++|..|++++.++|++||+|+++++++++|+|||++|||++++++.+++++++++++||+|+.++++
T Consensus 244 lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~ 323 (520)
T cd03344 244 LLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVT 323 (520)
T ss_pred EEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999776767999999999999999999
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
+++++|+++++++++++.|+++++.+++++.++|++++|+||++||+|++|||+|||+|+.+++|++|+++||+++++++
T Consensus 324 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a 403 (520)
T cd03344 324 KDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAA 403 (520)
T ss_pred eceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccchHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCcc
Q 016787 242 VEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEY 321 (382)
Q Consensus 242 ~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i 321 (382)
+++|+|||||++|+++|+.|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.|+ ++|||+.+|++
T Consensus 404 ~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~ 482 (520)
T cd03344 404 VEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEY 482 (520)
T ss_pred HhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcc
Confidence 99999999999999999999998766789999999999999999999999999999999999999887 89999999999
Q ss_pred ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016787 322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 358 (382)
Q Consensus 322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~ 358 (382)
.||++.|||||+.||.++|+.|+++|++||+||.+|.
T Consensus 483 ~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 483 VDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred cchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 9999999999999999999999999999999999885
No 9
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.5e-74 Score=599.12 Aligned_cols=365 Identities=49% Similarity=0.806 Sum_probs=348.3
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
++||++|+|.+++|++++|++++++|++|+++|.+|||++++++|+++++||+||++|++|++++++.++++++.+.++|
T Consensus 221 ~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~ 300 (600)
T PLN03167 221 SKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYP 300 (600)
T ss_pred HHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcC
Confidence 57899999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 161 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~ 161 (382)
|||++++|++++|++|+.|++++.++|++||+|+||+.++++|+|||++||+++++++.++.++++++++||+|++|++.
T Consensus 301 lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~ 380 (600)
T PLN03167 301 LLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLT 380 (600)
T ss_pred EEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999877777999999999999999999
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
++.++++++.++++.++.|+.+++.+++.+.++|++++|++|+++|+|++++|+|||+|+.+++|++|+++||++++|+|
T Consensus 381 ~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~a 460 (600)
T PLN03167 381 KDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA 460 (600)
T ss_pred cccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred hhcCccccchHHHHHHHHHHHHhccC-ChhhH-HHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCC
Q 016787 242 VEEGIVPGGGVALLYAAKELEKLSTA-NFDQK-IGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKG 319 (382)
Q Consensus 242 ~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~ 319 (382)
+++|+|||||++|++++..|++++.. ++++| .++++|++||+.||++||+|||+|+.+++++|++.+++++|||+.+|
T Consensus 461 i~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g 540 (600)
T PLN03167 461 VEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATG 540 (600)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCC
Confidence 99999999999999999999988765 55555 56999999999999999999999999999999866778899999999
Q ss_pred ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCC
Q 016787 320 EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKE 366 (382)
Q Consensus 320 ~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~ 366 (382)
++.||++.|||||+.||+++|+.|+++|++||+||++|..+|..+++
T Consensus 541 ~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~~ 587 (600)
T PLN03167 541 KYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPV 587 (600)
T ss_pred cCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 99999999999999999999999999999999999999998766554
No 10
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.5e-73 Score=589.14 Aligned_cols=358 Identities=59% Similarity=0.938 Sum_probs=343.5
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRP 81 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~ 81 (382)
.++|++|.|.+..|++..|++++++|++|+++|.+|+|+++.+++++.++||+||++|++|++++++.++++++++.|+|
T Consensus 165 ~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~ 244 (524)
T TIGR02348 165 EKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKP 244 (524)
T ss_pred HHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcC
Confidence 46889999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEe
Q 016787 82 LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTIS 161 (382)
Q Consensus 82 lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~ 161 (382)
|||++++|+++|+++|..|+++++++|++||+|+|++.++++|+|||++||+++++.+.+++++++++++||+|+.++++
T Consensus 245 lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~ 324 (524)
T TIGR02348 245 LLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVD 324 (524)
T ss_pred EEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999776777999999999999999999
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 162 KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
++++++++++++++.+..|+.+++.+++.+.+++++++|++|++||+|+++||+|||+|+.+++|++|+++||++++|++
T Consensus 325 ~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a 404 (524)
T TIGR02348 325 KDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAA 404 (524)
T ss_pred ecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCc
Q 016787 242 VEEGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGE 320 (382)
Q Consensus 242 ~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~ 320 (382)
+++|||||||++|+++|..|++ ..+ ++++++++++|++||+.||++||+|||+|+.+++++|++. +.++|||+.+|+
T Consensus 405 ~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~ 482 (524)
T TIGR02348 405 VEEGIVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGE 482 (524)
T ss_pred HhcCCccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCc
Confidence 9999999999999999999998 444 7899999999999999999999999999999999999876 446999999999
Q ss_pred cccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016787 321 YVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 361 (382)
Q Consensus 321 i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 361 (382)
+.||++.|||||+.||.++|+.|+++|++|||||++|...|
T Consensus 483 ~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 483 YEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred ccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 99999999999999999999999999999999999997654
No 11
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.5e-72 Score=582.28 Aligned_cols=359 Identities=50% Similarity=0.852 Sum_probs=342.0
Q ss_pred cccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCH-HHHHHHHHHHHHcCC
Q 016787 2 EKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL-TAVVRVLELALKRQR 80 (382)
Q Consensus 2 ~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~-~~l~~~le~i~~~~~ 80 (382)
+++|++|.|.+..|+..++++++++|++|+++|.+|||++++++|+.+++||+||++|++|+.. .+++++++++.+.++
T Consensus 166 ~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~ 245 (529)
T CHL00093 166 EKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKR 245 (529)
T ss_pred HHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCC
Confidence 4689999999988887778889999999999999999999999999999999999999999987 789999999999999
Q ss_pred CEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEE
Q 016787 81 PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTI 160 (382)
Q Consensus 81 ~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i 160 (382)
||||++++|+++++++|+.|+.+++++|+|||+|+++++++++|+|||++|||++++++.+.+++++++++||+|+.+++
T Consensus 246 ~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~ 325 (529)
T CHL00093 246 PLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIV 325 (529)
T ss_pred CEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEE
Confidence 99999999999999999999988888999999999999999999999999999999987777799999999999999999
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHH
Q 016787 161 SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~ 240 (382)
+++++++++ .++++++..||++++.+++.+.++|++++|++|+++|+|+++||+|||+|+.+++|++|+++||++++|+
T Consensus 326 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~ 404 (529)
T CHL00093 326 TKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKA 404 (529)
T ss_pred ecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 5678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccccchHHHHHHHHHHHHhcc-C-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCC
Q 016787 241 AVEEGIVPGGGVALLYAAKELEKLST-A-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAK 318 (382)
Q Consensus 241 a~~~gvvpGGGa~e~~ls~~L~~~~~-~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~ 318 (382)
++++|+|||||++|++||+.|++++. . ++++|+++++|++||+.||++||+|||+|+.++++++++. +.++|||+.+
T Consensus 405 a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~ 483 (529)
T CHL00093 405 AVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAAN 483 (529)
T ss_pred HHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCC
Confidence 99999999999999999999999875 4 7899999999999999999999999999999999999875 4689999999
Q ss_pred CccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016787 319 GEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 362 (382)
Q Consensus 319 ~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 362 (382)
|+++||++.|||||+.||.++|+.|+|+|++|||||++|+.+|+
T Consensus 484 g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 484 NKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred CcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999998763
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-65 Score=501.09 Aligned_cols=361 Identities=64% Similarity=1.000 Sum_probs=350.3
Q ss_pred CcccCCCceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCC
Q 016787 1 MEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQR 80 (382)
Q Consensus 1 ~~~~G~~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~ 80 (382)
+++||++|+|.++.|.++.|++++++||.|++||++|||+++++.+..+|++|++|+++.+|++++++.|.++...+...
T Consensus 179 ~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~ 258 (550)
T KOG0356|consen 179 MKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRR 258 (550)
T ss_pred HHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCC-CccccCCcCCCceeeEEE
Q 016787 81 PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG-MDLEKVNLDMLGTCKKVT 159 (382)
Q Consensus 81 ~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~-~~l~~l~~~~lG~~~~v~ 159 (382)
||||++++|+.++|.+|+.|++++.+++||||+|+||+.++..+.|++.+||+.++..+.+ ++++..++++||.|.++.
T Consensus 259 PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evv 338 (550)
T KOG0356|consen 259 PLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVV 338 (550)
T ss_pred ceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999877 789999999999999999
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHH
Q 016787 160 ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATK 239 (382)
Q Consensus 160 i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~ 239 (382)
++++.++++.+..+.++++.||++++..++...+.|+++++++|+++|+|++++|.++|.|+.|++|++.+++||||+++
T Consensus 339 vtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~ 418 (550)
T KOG0356|consen 339 VTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATR 418 (550)
T ss_pred EecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCC
Q 016787 240 AAVEEGIVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAK 318 (382)
Q Consensus 240 ~a~~~gvvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~ 318 (382)
+|+++|+|||||+++++|+..|..+... +..++.+++++.+||..|..+++.|||.|+..++.|++. ..+|||..+
T Consensus 419 aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~ 495 (550)
T KOG0356|consen 419 AAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---DDYGYDAAK 495 (550)
T ss_pred HHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---hhhhhhhhc
Confidence 9999999999999999999999987764 678899999999999999999999999999999999984 489999999
Q ss_pred CccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccC
Q 016787 319 GEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEE 364 (382)
Q Consensus 319 ~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~ 364 (382)
++++||++.||+||+.|...+|..|..+|+++++++.+|...|+++
T Consensus 496 ~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 496 GEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred ccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 9999999999999999999999999999999999999999999888
No 13
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-60 Score=453.04 Aligned_cols=313 Identities=18% Similarity=0.293 Sum_probs=286.0
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHH-------
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVV------- 69 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~------- 69 (382)
|.+.+||+++|| .+++|+.|++.|.+.+| +++|+++.||+|++++.+ ++++++++
T Consensus 197 IKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW 271 (543)
T KOG0361|consen 197 IKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEW 271 (543)
T ss_pred eeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHH
Confidence 578899999997 79999999999999876 688999999999999986 44666654
Q ss_pred ----HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 70 ----RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 70 ----~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
+.|++|..+|.|||++.-.|.|.|.|||+++++ .|| |+++.+||.|+..+||++++++ ..
T Consensus 272 ~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----FCA------GRV~~eDl~Rv~~acGGsi~tt-----~~ 335 (543)
T KOG0361|consen 272 NIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----FCA------GRVPEEDLNRVMQACGGSIQTT-----VS 335 (543)
T ss_pred HHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----eec------CcCCHHHHHHHHHhcCcchhhh-----hh
Confidence 567899999999999999999999999999986 455 5778999999999999999998 89
Q ss_pred cCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016787 146 KVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 222 (382)
Q Consensus 146 ~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~ 222 (382)
++.++.||.|..++ +.+++|-+|+||+. .++||++|||+-++
T Consensus 336 ~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~-----------------------------------aktcTliLRGgaeq 380 (543)
T KOG0361|consen 336 DIKEEVLGTCALFEERQVGGERYNLFEGCPK-----------------------------------AKTCTLILRGGAEQ 380 (543)
T ss_pred hcchhhcchhhhHHHHhhcchhhhhhcCCCc-----------------------------------cceeEEEEeccHHH
Confidence 99999999999998 45789999999985 35899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016787 223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300 (382)
Q Consensus 223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 300 (382)
+++|.+|++|||++++|.|+++. ||+|||++||++|+.|++|+.+ .+++|+-+.+|++|||.||++||+|||+|..++
T Consensus 381 fieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~i 460 (543)
T KOG0361|consen 381 FIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNI 460 (543)
T ss_pred HHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHH
Confidence 99999999999999999999998 9999999999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCC-CCCCCCC
Q 016787 301 VGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG-GMGGMGG 376 (382)
Q Consensus 301 i~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~ 376 (382)
+++|+..| ..|+|+|.+++.+.|+++.+||||..||++++..|+|+||+||++|+.|.+++++.++|.+ ++|-|+|
T Consensus 461 lnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~~a~rgrg~g 540 (543)
T KOG0361|consen 461 LNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPPSAAGRGRGRG 540 (543)
T ss_pred HHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCCccccCCCCC
Confidence 99999988 5899999999999999999999999999999999999999999999999999988887644 4444445
Q ss_pred CC
Q 016787 377 MG 378 (382)
Q Consensus 377 ~~ 378 (382)
|+
T Consensus 541 ~p 542 (543)
T KOG0361|consen 541 RP 542 (543)
T ss_pred CC
Confidence 44
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.8e-59 Score=482.17 Aligned_cols=291 Identities=23% Similarity=0.412 Sum_probs=267.4
Q ss_pred EEE--EeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHHHH---
Q 016787 10 ITI--HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVRV--- 71 (382)
Q Consensus 10 i~~--~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~~~--- 71 (382)
|.+ .+|++++|+ ++++|++|+++|.+|+ |++.++||+|++++++ +++++++.++
T Consensus 192 I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~-------m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~ 263 (517)
T cd03343 192 IKIEKKTGGSVDDT-ELIRGIVIDKEVVHPG-------MPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQ 263 (517)
T ss_pred eeEEeecCcCHHHc-ceeeeEEEeccCCCCC-------CccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHH
Confidence 555 899999975 8999999999999987 5778899999999999 4777777654
Q ss_pred --------HHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc
Q 016787 72 --------LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 143 (382)
Q Consensus 72 --------le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~ 143 (382)
++++++.|+||||++++|++.++++|.+++ +++|+ ++++++|+|||++|||+++++
T Consensus 264 E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~g------I~~v~-----~v~~~~l~~Ia~~tGa~ii~~----- 327 (517)
T cd03343 264 EEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAG------ILAVR-----RVKKSDMEKLARATGAKIVTN----- 327 (517)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------cEEEE-----eCCHHHHHHHHHHhCCEEecc-----
Confidence 458999999999999999999999998877 57887 456899999999999999998
Q ss_pred cccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016787 144 LEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS 220 (382)
Q Consensus 144 l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t 220 (382)
++++++++||+|++|++. +++|++|++|+++ ..+||+|||+|
T Consensus 328 ~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t 372 (517)
T cd03343 328 IDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP-----------------------------------KAVTILLRGGT 372 (517)
T ss_pred hhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-----------------------------------ceEEEEEECCc
Confidence 999999999999999987 6789999988753 37899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016787 221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA 298 (382)
Q Consensus 221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~ 298 (382)
+.+++|++|+++||++++|+++++| ||||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.
T Consensus 373 ~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~ 452 (517)
T cd03343 373 EHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPI 452 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999999 9999999999999999998766 7899999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016787 299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359 (382)
Q Consensus 299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 359 (382)
+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|+.
T Consensus 453 ~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 453 DTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred HHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 9999998765 367999999999999999999999999999999999999999999999975
No 15
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=7.6e-59 Score=480.63 Aligned_cols=290 Identities=21% Similarity=0.381 Sum_probs=267.6
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHHHHHH---
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVVRVLE--- 73 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~~~le--- 73 (382)
|.+.+|++++|+ ++++|++|+++|.+|. |++.++||+|++++++ |++++++.++++
T Consensus 197 i~k~~Ggs~~ds-~lv~G~vi~~~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~ 268 (519)
T TIGR02339 197 IEKKTGGSIDDT-ELVEGIVVDKEPVHPG-------MPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEE 268 (519)
T ss_pred EEEccCcChhcc-eeEeeEEEecCCCCCC-------CccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHH
Confidence 456899999975 9999999999999884 7888999999999998 678888777665
Q ss_pred --------HHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 74 --------LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 74 --------~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
++++.|+||||++++|++.++++|.+++ +++|+ ++++++|+|||++|||+++++ ++
T Consensus 269 ~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~g------I~~v~-----~v~~~~L~rIa~~tGa~ii~~-----~~ 332 (519)
T TIGR02339 269 AMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAG------ILAVR-----RVKKSDIEKLARATGAKIVSS-----IK 332 (519)
T ss_pred HHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCC------CEEEe-----cCCHHHHHHHHHHhCCEEeCc-----hh
Confidence 8999999999999999999999998887 57777 556899999999999999999 88
Q ss_pred cCCcCCCceeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016787 146 KVNLDMLGTCKKVTISK---DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 222 (382)
Q Consensus 146 ~l~~~~lG~~~~v~i~~---~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~ 222 (382)
+++++.||+|++|++.+ ++|++|++|+++ ..+||+|||+|+.
T Consensus 333 ~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~ 377 (519)
T TIGR02339 333 EITESDLGYAGLVEERKVGDDKMTFVEGCKNP-----------------------------------KAVTILLRGGTEH 377 (519)
T ss_pred hCChhhccCCceEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEECCCHH
Confidence 99999999999999875 889999988653 4789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016787 223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300 (382)
Q Consensus 223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 300 (382)
+++|.+|+++||++++++++++| ||||||++|++||..|++++.. ++++++++++|++||+.||++||+|||+|+.++
T Consensus 378 ~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~ 457 (519)
T TIGR02339 378 VVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDA 457 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999999999999999999999 9999999999999999998766 789999999999999999999999999999999
Q ss_pred HHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016787 301 VGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 358 (382)
Q Consensus 301 i~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~ 358 (382)
+.+|++.| +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus 458 l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 458 LVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred HHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 99998765 36799999999999999999999999999999999999999999999985
No 16
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-58 Score=479.83 Aligned_cols=296 Identities=19% Similarity=0.286 Sum_probs=265.5
Q ss_pred EEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC-------------HHH-----------
Q 016787 12 IHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTA----------- 67 (382)
Q Consensus 12 ~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~-------------~~~----------- 67 (382)
+.+|+++.|+ ++++|++|+++|.++. |++.++||+|++++++++. +++
T Consensus 191 ~~~Ggs~~~s-~li~Givi~~~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~ 262 (527)
T cd03335 191 KAHGKSAKES-YLVNGYALNCTRASQG-------MPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDI 262 (527)
T ss_pred EecCcChhhc-ceeeeEEEecccCCCC-------CcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHH
Confidence 7799999975 9999999999999874 7889999999999999753 232
Q ss_pred HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCC-cccc
Q 016787 68 VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM-DLEK 146 (382)
Q Consensus 68 l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~-~l~~ 146 (382)
+.++++++++.|++|||++++|++.++++|.+++ |++++ ++++++|+|||++|||+++++..++ ..++
T Consensus 263 l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~------I~~v~-----~v~~~~lerIa~~tGa~ii~~~~~l~~~~~ 331 (527)
T cd03335 263 TKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RVKKEDLRRIAKATGATLVSTLANLEGEET 331 (527)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHhCCEEecChhhcCcccc
Confidence 3366788999999999999999999999999988 68888 5568999999999999999984333 2234
Q ss_pred CCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhH
Q 016787 147 VNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAE 223 (382)
Q Consensus 147 l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~ 223 (382)
+++++||+|+.|+ +++++|++|++|++ +++|||+|||+|+.+
T Consensus 332 ~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~-----------------------------------~~~~TIllrG~t~~~ 376 (527)
T cd03335 332 FDPSYLGEAEEVVQERIGDDELILIKGTKK-----------------------------------RSSASIILRGANDFM 376 (527)
T ss_pred cCHhhCccCceEEEEEECCeEEEEEEcCCC-----------------------------------CCEEEEEEeCCcHHH
Confidence 5667899999999 56789999998875 368999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHH
Q 016787 224 VGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVV 301 (382)
Q Consensus 224 l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi 301 (382)
++|.+|+++||++++++++++| +|||||++|++|+..|++++.. ++++++++++|++||+.||++||+|||+|+.+++
T Consensus 377 l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~ 456 (527)
T cd03335 377 LDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELV 456 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999 9999999999999999998766 7899999999999999999999999999999999
Q ss_pred HHHHhcC-----------CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016787 302 GKLLEQD-----------NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 361 (382)
Q Consensus 302 ~~l~~~~-----------~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 361 (382)
.+|++.| ++++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++|||||++|..+|
T Consensus 457 ~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 457 AKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred HHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 9998865 34699999999999999999999999999999999999999999999998755
No 17
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-58 Score=477.12 Aligned_cols=290 Identities=20% Similarity=0.322 Sum_probs=263.7
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHH---------
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTA--------- 67 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~--------- 67 (382)
|.+.+|++++|+ ++++|++|+++|.+++ |++.++||+|++++++ ++++++
T Consensus 202 i~ki~Ggs~~dS-~~v~Givi~~~~~~~~-------m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~ 273 (526)
T cd03339 202 VEGKVGGRLEDT-KLVKGIVIDKDFSHPQ-------MPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQ 273 (526)
T ss_pred EEEecCcCHHHc-ceeeeEEEecccCCCC-------CCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHH
Confidence 456799999986 8999999999999997 5667789999998875 445655
Q ss_pred --HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 68 --VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 68 --l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
+.++++++++.|+||||++++|+|.|+++|.+|+ +.||+++ ++++|+|||++|||+++++ ++
T Consensus 274 ~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~ 337 (526)
T cd03339 274 KYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRWV-----GGVEIELIAIATGGRIVPR-----FE 337 (526)
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEeC-----CHHHHHHHHHHhCCEEecc-----hh
Confidence 5677899999999999999999999999999998 5789864 4778999999999999999 99
Q ss_pred cCCcCCCceeeEEEEe-----cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016787 146 KVNLDMLGTCKKVTIS-----KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS 220 (382)
Q Consensus 146 ~l~~~~lG~~~~v~i~-----~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t 220 (382)
++++++||+|+.|+.. +++++||++|+++ +++||+|||+|
T Consensus 338 ~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~-----------------------------------~~~TIllrG~t 382 (526)
T cd03339 338 DLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS-----------------------------------KAVTIFIRGGN 382 (526)
T ss_pred hCChhhcccCceEEEEEecCCCcEEEEEECCCCC-----------------------------------CEEEEEEECCC
Confidence 9999999999999843 3688899988753 58999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016787 221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA 298 (382)
Q Consensus 221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~ 298 (382)
+.+++|++|+++||++++++++++| +|||||++|++++..|++++.. ++++++++++|++||++||++||+|||+|+.
T Consensus 383 ~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~ 462 (526)
T cd03339 383 KMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPI 462 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999 9999999999999999998766 7889999999999999999999999999999
Q ss_pred HHHHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016787 299 VVVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 358 (382)
Q Consensus 299 ~vi~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~ 358 (382)
+++++|++.| +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|.
T Consensus 463 ~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 463 ETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred HHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 9999998766 34699999999999999999999999999999999999999999999873
No 18
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.7e-58 Score=474.59 Aligned_cols=293 Identities=22% Similarity=0.341 Sum_probs=264.1
Q ss_pred EEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC-------------HHH-----------
Q 016787 12 IHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTA----------- 67 (382)
Q Consensus 12 ~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~-------------~~~----------- 67 (382)
+.+|++..|+ ++++|++|+++|.+|+ |+++++||+|++++++++. +++
T Consensus 195 k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~ 266 (531)
T TIGR02347 195 EMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKF 266 (531)
T ss_pred EecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHH
Confidence 4678888875 9999999999999987 5788999999999999653 223
Q ss_pred HHHHHHHHHHcCC-------C---EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEec
Q 016787 68 VVRVLELALKRQR-------P---LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLIT 137 (382)
Q Consensus 68 l~~~le~i~~~~~-------~---lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~ 137 (382)
+..++++|++.+. + ||+++++|+|.++++|.+++ |+++++ +++++|+|||++|||++++
T Consensus 267 l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~------I~~i~r-----v~~~~le~ia~~tGa~~i~ 335 (531)
T TIGR02347 267 VDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEG------IMALRR-----AKRRNMERLTLACGGEALN 335 (531)
T ss_pred HHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCC------ceEEcc-----CCHHHHHHHHHHhCCEEec
Confidence 3355677877651 4 89999999999999999988 788884 4588999999999999999
Q ss_pred cCCCCccccCCcCCCceeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEE
Q 016787 138 EELGMDLEKVNLDMLGTCKKV---TISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVL 214 (382)
Q Consensus 138 ~~~~~~l~~l~~~~lG~~~~v---~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI 214 (382)
+ ++++++++||+|++| ++++++|++|++|+++ .+|||
T Consensus 336 ~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~TI 375 (531)
T TIGR02347 336 S-----VEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP-----------------------------------KSCTI 375 (531)
T ss_pred c-----cccCCccccccceEEEEEEECCeEEEEEEcCCCC-----------------------------------CeEEE
Confidence 9 999999999999999 4667899999988753 48999
Q ss_pred EecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHH
Q 016787 215 KIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAAN 292 (382)
Q Consensus 215 ~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~N 292 (382)
+|||+|+.+++|++|+++||++++++++++| +|||||++|++||..|++++.. ++++|+++++|++||+.||++||+|
T Consensus 376 ~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~N 455 (531)
T TIGR02347 376 LIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAEN 455 (531)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 9999999999999999998766 7899999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcCC---CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016787 293 AGVEGAVVVGKLLEQDN---TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 363 (382)
Q Consensus 293 aG~d~~~vi~~l~~~~~---~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~ 363 (382)
||+|+.+++.+|++.|+ .++|+|+.+|+++||++.|||||+.+|+++|++|+|+|++|||||++|+.+|+.
T Consensus 456 aG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 456 SGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred cCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence 99999999999988774 579999999999999999999999999999999999999999999999987654
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9e-59 Score=475.81 Aligned_cols=287 Identities=23% Similarity=0.331 Sum_probs=259.4
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
|.+.+|+++.|+ ++++|++|+++|.+|+ |+++++||+|++++++++..+.-.. .....+|||++++|
T Consensus 189 i~ki~ggs~~ds-~~i~G~~~~~~~~~~~-------m~~~~~n~~Ill~~~~le~~~~~~~-----~~~~~~lvi~~~~I 255 (484)
T cd03342 189 IMQMQHKSDSDT-KLIRGLVLDHGARHPD-------MPKRVENAYILTCNVSLEYEKTEVN-----SGFFYSVVINQKGI 255 (484)
T ss_pred EEEecCCChhhc-eEEeeEEEecCCCCCC-------CCccccCceEEEEeCCCCCCccccC-----cEEEEEEEEeCCCc
Confidence 456788888875 9999999999999997 5788999999999999986543111 01124699999999
Q ss_pred cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEE---EecceEE
Q 016787 90 ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVT---ISKDDTV 166 (382)
Q Consensus 90 ~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~---i~~~~~~ 166 (382)
+|.++++|.+|+ |+||++ +++++|+|||++|||+++++ ++++++++||+|++|+ +++++|+
T Consensus 256 ~~~al~~l~~~~------I~av~~-----~~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~ 319 (484)
T cd03342 256 DPPSLDMLAKEG------ILALRR-----AKRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYT 319 (484)
T ss_pred cHHHHHHHHHCC------CeEEEe-----CCHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEE
Confidence 999999999998 789985 46889999999999999999 9999999999999995 5678899
Q ss_pred EEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-
Q 016787 167 ILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG- 245 (382)
Q Consensus 167 ~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g- 245 (382)
+|++|+++ +++||+|||+|+.+++|.+|+++||++++++++++|
T Consensus 320 ~i~~~~~~-----------------------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~ 364 (484)
T cd03342 320 FIEGVKNP-----------------------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKC 364 (484)
T ss_pred EEECCCCC-----------------------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99988753 589999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCcc
Q 016787 246 IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEY 321 (382)
Q Consensus 246 vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i 321 (382)
+|||||++|++|+..|++++.. ++++|+++++|++||+.||++||+|||+|+.+++.+|++.| +.++|+|+.+|++
T Consensus 365 ~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~ 444 (484)
T cd03342 365 VVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEP 444 (484)
T ss_pred EEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcc
Confidence 9999999999999999998766 78999999999999999999999999999999999998776 4679999999999
Q ss_pred ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccC
Q 016787 322 VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360 (382)
Q Consensus 322 ~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~ 360 (382)
+||++.|||||+.+|.++|++|+|+|++|||||++|+.+
T Consensus 445 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 445 MDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred cchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 999999999999999999999999999999999999764
No 20
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.8e-58 Score=475.24 Aligned_cols=294 Identities=22% Similarity=0.330 Sum_probs=267.2
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC-------------HHHHHHHH----
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN-------------LTAVVRVL---- 72 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~-------------~~~l~~~l---- 72 (382)
|.+.+|++++|+ ++++|++|++++.++ +|++.++||+|++++++++. ++++.+++
T Consensus 197 i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~ 268 (525)
T TIGR02344 197 VEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEE 268 (525)
T ss_pred EEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHH
Confidence 455679999995 999999999998776 37889999999999999754 46665554
Q ss_pred -------HHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 73 -------ELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 73 -------e~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
+++.+.+++|||+++.|++.++++|.+++ |++++ ++++++|+|||++|||+++++ ++
T Consensus 269 ~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~------I~av~-----~v~~~~LerIa~~tGa~ii~~-----l~ 332 (525)
T TIGR02344 269 EYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN------ISAIR-----RVRKTDNNRIARACGATIVNR-----PE 332 (525)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------ceEEe-----cCCHHHHHHHHHHhCCeEecc-----hh
Confidence 48889999999999999999999998877 78887 667999999999999999999 99
Q ss_pred cCCcCCCce-eeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016787 146 KVNLDMLGT-CKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 221 (382)
Q Consensus 146 ~l~~~~lG~-~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~ 221 (382)
+++++++|+ |+.|++. ++++++|++|+++ .+|||+|||+|+
T Consensus 333 ~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~-----------------------------------~~~TIlLrG~t~ 377 (525)
T TIGR02344 333 ELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP-----------------------------------KACTILLRGASK 377 (525)
T ss_pred hCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEEcCCH
Confidence 999999999 9999974 4789999988753 489999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016787 222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 299 (382)
Q Consensus 222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 299 (382)
.+++|++|+++||+++++++++++ +|||||++|++||..|++++.. ++++|+++++|++||+.||++||+|||+|+.+
T Consensus 378 ~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~ 457 (525)
T TIGR02344 378 DVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIR 457 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999997 9999999999999999998766 78999999999999999999999999999999
Q ss_pred HHHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016787 300 VVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 362 (382)
Q Consensus 300 vi~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 362 (382)
++++|++.| +.++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++|||||++|...|+
T Consensus 458 ~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 524 (525)
T TIGR02344 458 TLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKK 524 (525)
T ss_pred HHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC
Confidence 999999876 356999999999999999999999999999999999999999999999988663
No 21
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.2e-58 Score=473.04 Aligned_cols=291 Identities=19% Similarity=0.306 Sum_probs=264.6
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHH--------
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAV-------- 68 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l-------- 68 (382)
|.+.+|++++|+ ++++|++|+++|.+|+ |++.++||+|++++++ +++++++
T Consensus 206 i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~-------m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~ 277 (532)
T TIGR02343 206 VEGKVGGSLEDT-KLIKGIIIDKDFSHPQ-------MPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQ 277 (532)
T ss_pred EEEecCCCcccc-eeEeeEEEecCcCCCC-------CCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHH
Confidence 456789999987 9999999999999987 5777889999998876 4566665
Q ss_pred ---HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 69 ---VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 69 ---~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
.++++++++.|+||||++++|+|.++++|.+|+ +.+|+++ ++++|+|||++|||+++++ ++
T Consensus 278 ~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~~~-----~~~~l~~Ia~~tGa~~i~~-----l~ 341 (532)
T TIGR02343 278 QKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVRWV-----GGHELELIAIATGGRIVPR-----FE 341 (532)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEEcC-----CHHHHHHHHHHhCCEEecc-----cc
Confidence 677999999999999999999999999999998 5788855 4778999999999999999 99
Q ss_pred cCCcCCCceeeEEEEe-----cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016787 146 KVNLDMLGTCKKVTIS-----KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS 220 (382)
Q Consensus 146 ~l~~~~lG~~~~v~i~-----~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t 220 (382)
++++++||+|++|+.. .++++++++|+++ .++||+|||+|
T Consensus 342 ~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~t 386 (532)
T TIGR02343 342 ELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS-----------------------------------KAVTIFIRGGN 386 (532)
T ss_pred cCCHhHCcccceEEEEEecCCcceEEEEECCCCC-----------------------------------CEEEEEEECCC
Confidence 9999999999999954 2478899988753 48999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016787 221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA 298 (382)
Q Consensus 221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~ 298 (382)
+.+++|.+|+++||+++++++++++ +|||||++|++|++.|++++.. ++++|+++++|++||++||++||+|||+|+.
T Consensus 387 ~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~ 466 (532)
T TIGR02343 387 KMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPI 466 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999997 9999999999999999998766 7889999999999999999999999999999
Q ss_pred HHHHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016787 299 VVVGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359 (382)
Q Consensus 299 ~vi~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 359 (382)
+++++|++.| +.++|+|+.+|+++||++.|||||+.||.++|+.|+|+|++|||||++|..
T Consensus 467 ~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 467 GTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred HHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 9999998765 356999999999999999999999999999999999999999999999954
No 22
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-57 Score=472.50 Aligned_cols=299 Identities=19% Similarity=0.289 Sum_probs=266.5
Q ss_pred EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCH-------------HH----------
Q 016787 11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL-------------TA---------- 67 (382)
Q Consensus 11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~-------------~~---------- 67 (382)
.+.+|+++.| +++++|++|+++|.++. |+++++||+|++++++++.. ++
T Consensus 194 ~k~~G~s~~~-s~~i~Gi~i~~~~~~~~-------m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~ 265 (536)
T TIGR02340 194 LKAHGGSARE-SYLVKGYALNCTRASQQ-------MPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREAD 265 (536)
T ss_pred EEecCCCccc-cEEEEEEEEecccCCCC-------CcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHH
Confidence 3489999965 59999999999999874 78899999999999997532 22
Q ss_pred -HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCC-ccc
Q 016787 68 -VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGM-DLE 145 (382)
Q Consensus 68 -l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~-~l~ 145 (382)
+.+.++.|++.|++|||++++|++.++++|.+++ +++++ ++++++|+|||++|||+++++..++ ..+
T Consensus 266 ~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~-----rv~~~~LerIa~~tGa~ii~~~~~l~~~~ 334 (536)
T TIGR02340 266 ITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVR-----RCKKEDLKRIAKATGGTLVSTLADLEGEE 334 (536)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEe-----cCCHHHHHHHHHHhCCEEecchhhcCccc
Confidence 3366788889999999999999999999999988 68888 4468999999999999999995333 334
Q ss_pred cCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016787 146 KVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 222 (382)
Q Consensus 146 ~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~ 222 (382)
++++++||+|++|+ +++++|++|++++++ .+|||+|||+|+.
T Consensus 335 ~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~TIlirG~t~~ 379 (536)
T TIGR02340 335 TFDASYLGFADEVVEERIADDECILIKGTKGR-----------------------------------KSASIILRGANDF 379 (536)
T ss_pred cccccccccCceEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEeCCcHH
Confidence 56677899999999 667899999987653 4899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016787 223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300 (382)
Q Consensus 223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 300 (382)
+++|++|+++||++++++++++| +|||||++|++++..|++++.. ++++++++++|++||++||++||+|||+|+.++
T Consensus 380 ~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~ 459 (536)
T TIGR02340 380 MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTEL 459 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999 9999999999999999988665 789999999999999999999999999999999
Q ss_pred HHHHHhcC-----------CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016787 301 VGKLLEQD-----------NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 363 (382)
Q Consensus 301 i~~l~~~~-----------~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~ 363 (382)
+.+|++.| +.++|||+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|..+|++
T Consensus 460 l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 460 VAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred HHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence 99998865 2369999999999999999999999999999999999999999999999987643
No 23
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-57 Score=470.16 Aligned_cols=303 Identities=18% Similarity=0.290 Sum_probs=271.5
Q ss_pred ccCCCc---e--EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC-------------CC
Q 016787 3 KVGKEG---V--ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SN 64 (382)
Q Consensus 3 ~~G~~g---~--i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I-------------~~ 64 (382)
++|+++ . |...+|+++.|+ ++++|++|+++|.+|+|. ++++.++||+|+++++++ ++
T Consensus 181 ~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~ 255 (522)
T cd03340 181 SLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPKKFKNPKILLLNVELELKAEKDNAEVRVED 255 (522)
T ss_pred HhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc----cCCccccCCeEEEEeCCCCCCccccceEEEECC
Confidence 456665 2 344589999986 899999999999998753 457779999999999984 45
Q ss_pred HHH-----------HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCC
Q 016787 65 LTA-----------VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGG 133 (382)
Q Consensus 65 ~~~-----------l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~ 133 (382)
+++ +.++++.+++.|++||+++++|+|.++++|.+++ |++++ ++++++|+|||++|||
T Consensus 256 ~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~-----~v~~~~l~rIa~~tGa 324 (522)
T cd03340 256 PEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAG-----RVPEEDLKRVAQATGG 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHHCC
Confidence 444 4566788999999999999999999999999998 57777 4468899999999999
Q ss_pred eEeccCCCCccccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCC
Q 016787 134 DLITEELGMDLEKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGG 210 (382)
Q Consensus 134 ~ii~~~~~~~l~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~ 210 (382)
+++++ ++++++++||+|+.|+ ++++++++|.+|..+ .
T Consensus 325 ~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~ 364 (522)
T cd03340 325 SIQTT-----VSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-----------------------------------K 364 (522)
T ss_pred EEeec-----cccCCccccccceEEEEEEECCEEEEEEECCCCC-----------------------------------c
Confidence 99999 9999999999999999 456789999988643 4
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHH
Q 016787 211 VAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHT 288 (382)
Q Consensus 211 ~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~ 288 (382)
.+||+|||+|+.+++|.+|+++||++++++++++| ||||||++|++++..|++++.. ++++++++++|++||++||++
T Consensus 365 ~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~ 444 (522)
T cd03340 365 TCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQ 444 (522)
T ss_pred eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998 9999999999999999998766 789999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHhcC---C-CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016787 289 IAANAGVEGAVVVGKLLEQD---N-TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 361 (382)
Q Consensus 289 L~~NaG~d~~~vi~~l~~~~---~-~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 361 (382)
||+|||+|+.+++.+|++.| + .++|+|+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|+.++
T Consensus 445 La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 445 LCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred HHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 99999999999999999876 2 5699999999999999999999999999999999999999999999998753
No 24
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-57 Score=469.68 Aligned_cols=301 Identities=19% Similarity=0.293 Sum_probs=271.1
Q ss_pred cccCCCce----------EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC--------
Q 016787 2 EKVGKEGV----------ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------- 63 (382)
Q Consensus 2 ~~~G~~g~----------i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------- 63 (382)
.++|++|. |.+.+|++++|+ ++++|++|+++|.++++ +|+.++||+|++++++++
T Consensus 168 ~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~~~~~~ 240 (515)
T cd03338 168 LKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPKTDMDN 240 (515)
T ss_pred HHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccccccCc
Confidence 46788885 788899999987 99999999999999752 377789999999888743
Q ss_pred -----CH-----------HHHHHHHHHHHHcCCCEEEEecCC-----cHHHHHHHHHccccCCceEEEEecCCCCcchhh
Q 016787 64 -----NL-----------TAVVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKA 122 (382)
Q Consensus 64 -----~~-----------~~l~~~le~i~~~~~~lvI~~~~i-----~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~ 122 (382)
++ +++.++++++++.|+||||++++| ++.++++|..++ |+||+ +++++
T Consensus 241 ~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~------I~av~-----~~~~~ 309 (515)
T cd03338 241 NIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLK------IMVVK-----DIERE 309 (515)
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCC------ceEEe-----cCCHH
Confidence 33 335677899999999999999998 899999998766 78998 56789
Q ss_pred hHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHH
Q 016787 123 NMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK---DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEK 199 (382)
Q Consensus 123 ~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~---~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~ 199 (382)
+|+|||++|||+++++ ++++++++||+|+.|++.+ +++++|.+|.+
T Consensus 310 ~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~-------------------------- 358 (515)
T cd03338 310 EIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN-------------------------- 358 (515)
T ss_pred HHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEECCeEEEEEEecCC--------------------------
Confidence 9999999999999999 9999999999999999764 57888887753
Q ss_pred HHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHH
Q 016787 200 LQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQI 277 (382)
Q Consensus 200 l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~ 277 (382)
++++|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++|++.|++++.. ++++|+++++
T Consensus 359 --------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~ 430 (515)
T cd03338 359 --------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRA 430 (515)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 24689999999999999999999999999999999999 9999999999999999998766 7899999999
Q ss_pred HHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchh
Q 016787 278 IQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTE 354 (382)
Q Consensus 278 ~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id 354 (382)
|++||+.||++||+|||+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||
T Consensus 431 ~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID 510 (515)
T cd03338 431 FADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKID 510 (515)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999998876 5679999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 016787 355 AIVVE 359 (382)
Q Consensus 355 ~iI~~ 359 (382)
++|++
T Consensus 511 ~ii~~ 515 (515)
T cd03338 511 DIVLA 515 (515)
T ss_pred hhhcC
Confidence 99863
No 25
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.4e-57 Score=466.96 Aligned_cols=294 Identities=26% Similarity=0.366 Sum_probs=267.5
Q ss_pred eEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC--------------CHHHHH-----
Q 016787 9 VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS--------------NLTAVV----- 69 (382)
Q Consensus 9 ~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~--------------~~~~l~----- 69 (382)
.|.+.+|++++|+ ++++|+++++.+.++ |+++++||+|++++++++ +++++.
T Consensus 190 ~i~ki~G~s~~ds-~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (517)
T cd03336 190 QIIKKLGGSLKDS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEA 260 (517)
T ss_pred eEEEccCCCccce-EEEeeEEEecccCCC--------CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHH
Confidence 3556689999986 899999999987543 588899999999999865 555542
Q ss_pred ------HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc
Q 016787 70 ------RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 143 (382)
Q Consensus 70 ------~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~ 143 (382)
++++.|++.|++++++++.|++.++++|.+++ |++|++|+ +++|+|||++|||+++++
T Consensus 261 E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~------I~av~~v~-----~~~L~rIa~~tGa~ii~~----- 324 (517)
T cd03336 261 EKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAG------IMAIEHAD-----FDGVERLALVTGGEIAST----- 324 (517)
T ss_pred HHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------cEEEecCC-----HHHHHHHHHHhCCEEecc-----
Confidence 35788999999999999999999999999888 79999775 668999999999999999
Q ss_pred cccCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016787 144 LEKVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS 220 (382)
Q Consensus 144 l~~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t 220 (382)
++++++++||+|+.|+.. ++++++|.+|++ +++|||+|||+|
T Consensus 325 l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t 369 (517)
T cd03336 325 FDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA-----------------------------------GEACTIVLRGAS 369 (517)
T ss_pred cCCCCcccccccceEEEEEECCeEEEEEEccCC-----------------------------------CceEEEEEeCCC
Confidence 999999999999999954 578999998864 358999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016787 221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA 298 (382)
Q Consensus 221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~ 298 (382)
+.+++|.+|+++||++++++++++| +|||||++|++|++.|++++.+ ++++++++++|++||+.||++||+|||+|+.
T Consensus 370 ~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~ 449 (517)
T cd03336 370 QQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSA 449 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999 9999999999999999998776 7899999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016787 299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 362 (382)
Q Consensus 299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 362 (382)
+++.+|++.| +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.+|+
T Consensus 450 ~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 516 (517)
T cd03336 450 ELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPR 516 (517)
T ss_pred HHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence 9999999876 467999999999999999999999999999999999999999999999998774
No 26
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=3e-57 Score=469.50 Aligned_cols=293 Identities=23% Similarity=0.345 Sum_probs=267.1
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC--------------CCHHHHH------
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI--------------SNLTAVV------ 69 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I--------------~~~~~l~------ 69 (382)
|.+.+|++++|+ ++++|+++++++.++ |+++++||+|+++++++ ++++++.
T Consensus 203 i~ki~Ggsi~ds-~lv~G~v~~~~~~~~--------~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E 273 (533)
T PTZ00212 203 IIKKPGGTLRDS-YLEDGFILEKKIGVG--------QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAE 273 (533)
T ss_pred EEEecCcCcccc-EEEEeEEEecccCCC--------CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHH
Confidence 567799999987 899999999987553 68889999999999986 5665543
Q ss_pred -----HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCcc
Q 016787 70 -----RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 144 (382)
Q Consensus 70 -----~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l 144 (382)
++++.|++.|++++++++.|++.++++|.+++ |++||++ ++++++|||++|||+++++ +
T Consensus 274 ~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~------I~avr~v-----~~~~l~rIa~~tGa~iis~-----l 337 (533)
T PTZ00212 274 KEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG------IMAIEHA-----DFDGMERLAAALGAEIVST-----F 337 (533)
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------CEEEecC-----CHHHHHHHHHHhCCEEeec-----C
Confidence 34778999999999999999999999999998 7899844 5789999999999999999 9
Q ss_pred ccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016787 145 EKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 221 (382)
Q Consensus 145 ~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~ 221 (382)
+++++++||+|+.|+ ++++++++|++|.. +++|||+|||+|+
T Consensus 338 ~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t~ 382 (533)
T PTZ00212 338 DTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK-----------------------------------GEACTIVLRGAST 382 (533)
T ss_pred CCCCHHHccCCceEEEEEECCeEEEEEEccCC-----------------------------------CCEEEEEEECCCh
Confidence 999999999999999 55789999998763 4689999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016787 222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 299 (382)
Q Consensus 222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 299 (382)
.+++|.+|+++|||+++++++++| +|||||++|++||..|++++.. ++++++++++|++||++||++||+|||+|+.+
T Consensus 383 ~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~ 462 (533)
T PTZ00212 383 HILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAE 462 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999998 9999999999999999998776 78999999999999999999999999999999
Q ss_pred HHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCc
Q 016787 300 VVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 362 (382)
Q Consensus 300 vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 362 (382)
++.+|++.| +.++|+|+.+|++.||++.|||||+.||.++|+.|+|+|++|||||++|..+|+
T Consensus 463 vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 528 (533)
T PTZ00212 463 LVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPR 528 (533)
T ss_pred HHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCc
Confidence 999998766 467999999999999999999999999999999999999999999999998653
No 27
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-57 Score=469.86 Aligned_cols=297 Identities=19% Similarity=0.279 Sum_probs=266.0
Q ss_pred EeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC-------------CCHHH-----------H
Q 016787 13 HDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA-----------V 68 (382)
Q Consensus 13 ~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I-------------~~~~~-----------l 68 (382)
.+|++++|+ ++++|++|++++.+ +++.++||+|+++++++ +++++ +
T Consensus 199 i~G~s~~ds-~li~Gi~~~~~~~~---------~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i 268 (531)
T TIGR02346 199 IMGGSISNS-EVLKGMVFNREAEG---------SVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQI 268 (531)
T ss_pred ecCCChhhc-eeEeeeEEeccCCC---------CceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHH
Confidence 489998875 99999999998432 46789999999999974 23333 4
Q ss_pred HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCC
Q 016787 69 VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVN 148 (382)
Q Consensus 69 ~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~ 148 (382)
.++++++++.|+||||++++|+|.++++|..++ |+||++|+ ..+|+|||++|||+++++ +++++
T Consensus 269 ~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~------I~av~~~~-----~~~l~~Ia~~tGa~ii~~-----l~~~~ 332 (531)
T TIGR02346 269 EAYIKAIADSGVNVIVTGGSVGDMALHYCEKYN------IMVLKIPS-----KFELRRLCKTVGATPLAR-----LGAPQ 332 (531)
T ss_pred HHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCC------cEEEecCC-----HHHHHHHHHHHCCEEecc-----cccCC
Confidence 577899999999999999999999999998777 79999886 558999999999999999 89999
Q ss_pred cCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHH
Q 016787 149 LDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVG 225 (382)
Q Consensus 149 ~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~ 225 (382)
+++||+|++|++. ++++.+|.++.. .++++||+|||+|+.+++
T Consensus 333 ~~~LG~a~~v~~~~ig~~~~~~i~~~~~----------------------------------~~~~~tI~lrG~t~~~l~ 378 (531)
T TIGR02346 333 PEEIGYVDSVYVSEIGGQKVTVFKQENG----------------------------------DSKISTIILRGSTKNLLD 378 (531)
T ss_pred HhHccccceEEEEEECCEEEEEEEccCC----------------------------------CCCeEEEEEECCCHHHHH
Confidence 9999999999976 367888877542 257999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHH
Q 016787 226 EKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGK 303 (382)
Q Consensus 226 E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~ 303 (382)
|++|+++||++++++++++| +|||||++|++||..|++++.. ++++++++++|++||+.||++||+|||+|+.+++.+
T Consensus 379 E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~ 458 (531)
T TIGR02346 379 DIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPK 458 (531)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999 9999999999999999998766 789999999999999999999999999999999999
Q ss_pred HHhcC---CCceeEeCCCCc--cccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCCC
Q 016787 304 LLEQD---NTDLGYDAAKGE--YVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPG 369 (382)
Q Consensus 304 l~~~~---~~~~Gid~~~~~--i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~ 369 (382)
|++.| +.++|+|+.+|+ ++||++.|||||+.||+++|+.|+|+|++|||||++|..+|...+++|+
T Consensus 459 l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~ 529 (531)
T TIGR02346 459 LYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQ 529 (531)
T ss_pred HHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCC
Confidence 98875 457999999999 5999999999999999999999999999999999999998877777543
No 28
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-56 Score=464.03 Aligned_cols=292 Identities=21% Similarity=0.327 Sum_probs=261.7
Q ss_pred EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CH-----------H
Q 016787 11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NL-----------T 66 (382)
Q Consensus 11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~-----------~ 66 (382)
.+.+|+++.|+ ++++|++|+++|.++. +||+.++||+|++++++++ ++ +
T Consensus 188 ~k~~Ggs~~ds-~li~Givl~k~~~~~~------~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~ 260 (517)
T TIGR02342 188 VKKLGGTIDDT-ELIEGLVFTQKASRSA------GGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERK 260 (517)
T ss_pred EeccCCChhhc-EEEeeEEEeccccccC------CCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHH
Confidence 34578888875 9999999999998741 3788899999999998754 32 2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC-----cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCC
Q 016787 67 AVVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG 141 (382)
Q Consensus 67 ~l~~~le~i~~~~~~lvI~~~~i-----~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~ 141 (382)
++.++++++++.|+||||++++| ++.++++|..++ |+||+ ++++++|+|||++|||+++++
T Consensus 261 ~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~------I~av~-----~v~~~~LerIa~~tGa~ii~~--- 326 (517)
T TIGR02342 261 YILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMK------IMVVK-----DIEREEVEFICKTIGCKPIAS--- 326 (517)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCC------ceEEe-----cCCHHHHHHHHHHHCCEEEcc---
Confidence 35678899999999999999998 899999998876 79998 557899999999999999999
Q ss_pred CccccCCcCCCceeeEEE-Ee--cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecC
Q 016787 142 MDLEKVNLDMLGTCKKVT-IS--KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGG 218 (382)
Q Consensus 142 ~~l~~l~~~~lG~~~~v~-i~--~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG 218 (382)
++++++++||+|+.|+ ++ +..++++.++.+ +++++||+|||
T Consensus 327 --~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~----------------------------------~~~~~tIllrG 370 (517)
T TIGR02342 327 --IDHFTADKLGSAELVEEVTTDGGKIIKITGIQN----------------------------------AGKTVTVLLRG 370 (517)
T ss_pred --hhhcCcccCcCCceEEEEEECCeEEEEEEccCC----------------------------------CCceEEEEEeC
Confidence 8999999999999999 33 456777777654 24689999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCC
Q 016787 219 ASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVE 296 (382)
Q Consensus 219 ~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d 296 (382)
+|+.+++|++|+++||+++++++++++ +|||||++|+++|..|++++.+ ++++|+++++|++||++||++||+|||+|
T Consensus 371 ~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d 450 (517)
T TIGR02342 371 SNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLN 450 (517)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999986 9999999999999999998766 78999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016787 297 GAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359 (382)
Q Consensus 297 ~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 359 (382)
+.+++++|++.| +.++|+|+.+|+++||++.|||||+.||.++|++|+|+|++|||||++|+.
T Consensus 451 ~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 451 PIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred HHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 999999999876 567999999999999999999999999999999999999999999999975
No 29
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7e-56 Score=457.78 Aligned_cols=293 Identities=24% Similarity=0.352 Sum_probs=264.2
Q ss_pred EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC--------------HHHH--------
Q 016787 11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN--------------LTAV-------- 68 (382)
Q Consensus 11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~--------------~~~l-------- 68 (382)
.+.+|++++|+ ++++|+++++.+.++ +++.++||+|++++++++. ++++
T Consensus 193 ~k~~G~s~~~s-~l~~G~v~~~~~~~~--------~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~ 263 (519)
T TIGR02341 193 IKKLGGSLNDS-YLDEGFLLEKKIGVN--------QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEK 263 (519)
T ss_pred EEccCCCcccc-eEEeeEEEeccCCCC--------CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHH
Confidence 34479999886 899999999887543 6788999999999998752 3333
Q ss_pred ---HHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 69 ---VRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 69 ---~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
..+++.|++.|++++++++.|++.++++|..++ |++|++++ +++|+|||++|||+++++ ++
T Consensus 264 ~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~------I~~v~~~~-----~~~l~~ia~~tGa~ii~~-----~~ 327 (519)
T TIGR02341 264 EKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG------VMAIEHAD-----FEGIERLALVTGGEIVST-----FD 327 (519)
T ss_pred HHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC------cEEEecCC-----HHHHHHHHHHhCCEEecc-----cc
Confidence 234678999999999999999999999999888 79999775 668999999999999999 89
Q ss_pred cCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016787 146 KVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 222 (382)
Q Consensus 146 ~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~ 222 (382)
++++++||+|+.|+.. ++++++|.+|++ +++|||+|||+|+.
T Consensus 328 ~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TIllrG~t~~ 372 (519)
T TIGR02341 328 HPELVKLGSCDLIEEIMIGEDKLLKFSGVKL-----------------------------------GEACTIVLRGATQQ 372 (519)
T ss_pred cCCccccccCceEEEEEECCEEEEEEEcCCC-----------------------------------CCEEEEEEeCCCHH
Confidence 9999999999999854 578999998874 35899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016787 223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300 (382)
Q Consensus 223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 300 (382)
+++|.+|+++||+++++++++++ +|||||++|++|++.|++++.. ++++++++++|++||+.||++||+|||+|+.++
T Consensus 373 ~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~ 452 (519)
T TIGR02341 373 ILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAEL 452 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999997 9999999999999999998766 789999999999999999999999999999999
Q ss_pred HHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016787 301 VGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 363 (382)
Q Consensus 301 i~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~ 363 (382)
+.+|++.| +.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.+|++
T Consensus 453 l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 518 (519)
T TIGR02341 453 VAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPRA 518 (519)
T ss_pred HHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCC
Confidence 99999876 4569999999999999999999999999999999999999999999999998843
No 30
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.5e-56 Score=459.28 Aligned_cols=295 Identities=18% Similarity=0.285 Sum_probs=265.4
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHH---------
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA--------- 67 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~--------- 67 (382)
|...+|++++|+ ++++|++|+++|.+|+|. +|++.++||+|++++++++ ++++
T Consensus 194 i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~ 268 (522)
T TIGR02345 194 VKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE----QQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEW 268 (522)
T ss_pred EEeecCCCHHhc-ceecceEEecccCccccc----cCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHH
Confidence 344589999997 789999999999999864 4678899999999999864 3444
Q ss_pred --HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 68 --VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 68 --l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
+..+++++++.|+++|+++++|++.++++|.+++ |.+++ ++.+++++++|++|||+++++ ++
T Consensus 269 ~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~------I~~~~-----~v~~~dl~ria~~tga~ii~~-----~~ 332 (522)
T TIGR02345 269 AIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHN------IFCAG-----RVSDEDLKRVVKACGGSIQST-----TS 332 (522)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCC------cEEEe-----cCCHHHHHHHHHHhCCeEEcc-----hh
Confidence 2355677888999999999999999999999988 67887 445889999999999999999 99
Q ss_pred cCCcCCCceeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016787 146 KVNLDMLGTCKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 222 (382)
Q Consensus 146 ~l~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~ 222 (382)
++++++||+|+.++.. ++++++|.+|+++ .+|||+|||+|+.
T Consensus 333 ~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-----------------------------------~~~TI~lrG~t~~ 377 (522)
T TIGR02345 333 DLEADVLGTCALFEERQIGSERYNYFTGCPHA-----------------------------------KTCTIILRGGAEQ 377 (522)
T ss_pred hCChhhccCCceEEEEEECCeEEEEEEcCCCC-----------------------------------ceEEEEEECCCHH
Confidence 9999999999999964 4688899887643 4899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016787 223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300 (382)
Q Consensus 223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 300 (382)
+++|.+|+++||+++++++++++ +|||||++|+++++.|++++.. ++++++++++|++||++||++||+|||+|+.++
T Consensus 378 ~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~v 457 (522)
T TIGR02345 378 FIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEI 457 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999986 9999999999999999988766 789999999999999999999999999999999
Q ss_pred HHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccC
Q 016787 301 VGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVEL 360 (382)
Q Consensus 301 i~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~ 360 (382)
+.+|++.| +.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+.+
T Consensus 458 l~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 458 LNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred HHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 99998876 3579999999999999999999999999999999999999999999999774
No 31
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-55 Score=451.14 Aligned_cols=276 Identities=20% Similarity=0.297 Sum_probs=253.0
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
|.+.+|++++|+ ++++|++|++.+.. ++++++||+|++++++++. |++|||++++|
T Consensus 186 i~ki~Gg~~~ds-~lv~Giv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I 241 (472)
T cd03341 186 VVKILGGSLEDS-KVVRGMVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSV 241 (472)
T ss_pred EEEecCCCcccc-eEEeeEEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCC
Confidence 345589999987 99999999875432 4578999999999999987 89999999999
Q ss_pred cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEec---ceEE
Q 016787 90 ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK---DDTV 166 (382)
Q Consensus 90 ~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~---~~~~ 166 (382)
+|.++++|.+++ |++|++|+ +++|+|||++||++++++ +++++++++|+|++|++.+ ++++
T Consensus 242 ~d~al~~l~~~~------I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~ 305 (472)
T cd03341 242 GDLALHYCNKYG------IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVV 305 (472)
T ss_pred CHHHHHHHHHCC------eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEE
Confidence 999999998776 89999875 788999999999999999 8889999999999999876 7899
Q ss_pred EEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-
Q 016787 167 ILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG- 245 (382)
Q Consensus 167 ~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g- 245 (382)
+|.+|.+ .++++||+|||+|+.+++|++|+++||++++++++++|
T Consensus 306 ~~~~~~~----------------------------------~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~ 351 (472)
T cd03341 306 VFRQNKE----------------------------------DSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGR 351 (472)
T ss_pred EEEccCC----------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9988753 14689999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeCCCC--
Q 016787 246 IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDAAKG-- 319 (382)
Q Consensus 246 vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~~~~-- 319 (382)
+|||||++|++++..|++++.. ++++++++++|++||++||++|++|||+|+.+++.+|+..| +.++|||+.+|
T Consensus 352 vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~ 431 (472)
T cd03341 352 FVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDE 431 (472)
T ss_pred EEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCC
Confidence 9999999999999999998765 78999999999999999999999999999999999998766 56799999999
Q ss_pred ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016787 320 EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359 (382)
Q Consensus 320 ~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 359 (382)
++.||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 432 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 432 GTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred CccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999999999999999999999999999999999865
No 32
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-55 Score=452.60 Aligned_cols=273 Identities=21% Similarity=0.346 Sum_probs=250.6
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
|.+.+|+++.|+ ++++|++|++++.++ +|+++++||+|++++++++. |||++++|
T Consensus 197 i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le~-----------------lvi~~k~I 251 (480)
T cd03337 197 VEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLEY-----------------LVITEKGV 251 (480)
T ss_pred EEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcce-----------------EEEeCCCc
Confidence 455679999985 999999999999886 48899999999999999876 99999999
Q ss_pred cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCce-eeEEEEe---cceE
Q 016787 90 ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGT-CKKVTIS---KDDT 165 (382)
Q Consensus 90 ~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~-~~~v~i~---~~~~ 165 (382)
+|.++++|.+|+ |++|+ ++++++|+|||++|||+++++ ++++++++||+ |+.++.. ++++
T Consensus 252 ~d~al~~L~~~~------I~~v~-----~v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~ 315 (480)
T cd03337 252 SDLAQHYLVKAG------ITALR-----RVRKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYF 315 (480)
T ss_pred cHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEE
Confidence 999999999998 78998 456899999999999999999 89999999999 5555543 4688
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 016787 166 VILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 245 (382)
Q Consensus 166 ~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g 245 (382)
++|++|+++ +.+||+|||+|+.+++|.+|+++||+++++++++++
T Consensus 316 ~~i~~~~~~-----------------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~ 360 (480)
T cd03337 316 TFITECKDP-----------------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNP 360 (480)
T ss_pred EEEEcCCCC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999988753 589999999999999999999999999999999997
Q ss_pred -ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC----CCceeEeCCCC
Q 016787 246 -IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD----NTDLGYDAAKG 319 (382)
Q Consensus 246 -vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~----~~~~Gid~~~~ 319 (382)
+|||||++|++||+.|++++.+ ++++|+++++|++||++||++||+|||+|+.+++.+|++.| +.++|+|+.+|
T Consensus 361 ~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 440 (480)
T cd03337 361 KLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETG 440 (480)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCC
Confidence 9999999999999999998766 78999999999999999999999999999999999999876 35699999999
Q ss_pred ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016787 320 EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 358 (382)
Q Consensus 320 ~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~ 358 (382)
+++||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 441 ~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 441 DIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred CcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 999999999999999999999999999999999999985
No 33
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-55 Score=448.41 Aligned_cols=311 Identities=41% Similarity=0.618 Sum_probs=272.2
Q ss_pred cccCC-----CceEEEEeCCccceeeEEEEeEEEeecccCcccccccccCc-eeecCceEEEeccCCCC-----------
Q 016787 2 EKVGK-----EGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQK-CELEDPLILVHEKKISN----------- 64 (382)
Q Consensus 2 ~~~G~-----~g~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~l~~p~Ill~d~~I~~----------- 64 (382)
.+||. ||++.++..++..+++++++||+|+++|.+||| |+ +.++||+||++|++|+.
T Consensus 168 ~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~------~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i 241 (524)
T COG0459 168 EKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF------MPDKRLENPKILLLDKKLEIKKPELPLEIVI 241 (524)
T ss_pred HHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCC------CCccccccceEEEEccccccccccCcceeEe
Confidence 46777 999999877777777899999999999999997 55 78999999999999653
Q ss_pred --HHH------------HHHHHHHHHHcCCC-EEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhH-HHHH
Q 016787 65 --LTA------------VVRVLELALKRQRP-LLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANM-QDLA 128 (382)
Q Consensus 65 --~~~------------l~~~le~i~~~~~~-lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~l-e~la 128 (382)
.++ +..+++.+.+.+.| +++++++|+|.++++|.+++ |++++++ .++++ ++|+
T Consensus 242 ~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~------Ilt~~~v-----~~~dl~~~l~ 310 (524)
T COG0459 242 SSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIA------ILTGRRV-----KKEDLGERLA 310 (524)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhc------ceeccee-----cchhhHHHHH
Confidence 222 23556778888999 78999999999999998888 6777644 57788 7999
Q ss_pred HHHCCeEeccCCCCccccCCcCCCce--eeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhh
Q 016787 129 VLTGGDLITEELGMDLEKVNLDMLGT--CKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAK 206 (382)
Q Consensus 129 ~~tG~~ii~~~~~~~l~~l~~~~lG~--~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~ 206 (382)
.+|||++++. ++++++..+|. |.+++..+ .++++++.+.+|.++
T Consensus 311 ~~~ga~~v~~-----~~d~t~~~~G~~~~~~ve~~~-----------------------------~~~~~~~~~~~~~~~ 356 (524)
T COG0459 311 KLGGAKIVSV-----LKDLTTIVLGEGAAGLVEETK-----------------------------TGDYDMEKLQERKAK 356 (524)
T ss_pred HccCceEEee-----cccCceeecCccccceEEEee-----------------------------ccchhhhhhhhhhhc
Confidence 9999999999 89999999999 88887652 122344445555556
Q ss_pred hcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-Ch-hhHHHHHHHHHHhh
Q 016787 207 LSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NF-DQKIGVQIIQNALK 283 (382)
Q Consensus 207 l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~-~~~~~~~~~a~AL~ 283 (382)
.+++|||+|||+|+.+++|++|+++|||+++++++++| +|||||++|++++..|+.++.+ ++ ++|+++++|++||+
T Consensus 357 -~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale 435 (524)
T COG0459 357 -AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALE 435 (524)
T ss_pred -CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999 9999999999999999998433 54 89999999999999
Q ss_pred hhHHHHHHHcCCCHHHHHHHHHhcCC-CceeEeCCCCcc-ccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016787 284 TPVHTIAANAGVEGAVVVGKLLEQDN-TDLGYDAAKGEY-VDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 361 (382)
Q Consensus 284 ~ip~~L~~NaG~d~~~vi~~l~~~~~-~~~Gid~~~~~i-~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 361 (382)
.||++||+|||+|+.+++.+|++.|+ +++|+|+.++++ .||++.|||||+.||.++|++|+|+|++|||+|++|.+.|
T Consensus 436 ~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~ 515 (524)
T COG0459 436 APPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKP 515 (524)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999986 569999999999 7799999999999999999999999999999999999998
Q ss_pred ccC
Q 016787 362 KEE 364 (382)
Q Consensus 362 ~~~ 364 (382)
++.
T Consensus 516 ~~~ 518 (524)
T COG0459 516 EEK 518 (524)
T ss_pred ccc
Confidence 875
No 34
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.6e-53 Score=435.77 Aligned_cols=276 Identities=37% Similarity=0.582 Sum_probs=253.0
Q ss_pred CceEEEE--eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q 016787 7 EGVITIH--DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 84 (382)
Q Consensus 7 ~g~i~~~--~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI 84 (382)
.+.|.++ +||++.|+ ++++|++|+++|.+|+ |++.++||+|++++++++. |||
T Consensus 179 ~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~-------m~~~~~n~~Ili~~~~Le~-----------------lIi 233 (464)
T cd00309 179 LGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLEY-----------------VVI 233 (464)
T ss_pred cceEEEEecCCCCcccc-eeeeeEEEecCCCCCC-------CceeecCceEEEEecCcce-----------------EEe
Confidence 5666554 78888886 8999999999999987 5888999999999999987 778
Q ss_pred EecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEec--
Q 016787 85 VAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK-- 162 (382)
Q Consensus 85 ~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~-- 162 (382)
++++|++.++++|.+++ |++|++ +++++|+|||++||++++++ +++++++.+|+|+.+++.+
T Consensus 234 ~~~~I~~~al~~L~~~~------I~~v~~-----~~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g 297 (464)
T cd00309 234 AEKGIDDEALHYLAKLG------IMAVRR-----VRKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIG 297 (464)
T ss_pred cCCCcCHHHHHHHHHCC------eEEEEe-----CCHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEc
Confidence 88889999999999877 789985 46899999999999999999 8889999999999999764
Q ss_pred -ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 163 -DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 163 -~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
+++++|.++.. +.+|||+|||+|+.+++|++|+++||+++++++
T Consensus 298 ~~~~~~~~~~~~-----------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~ 342 (464)
T cd00309 298 DEKYTFIEGCKG-----------------------------------GKVATILLRGATEVELDEAERSLHDALCAVRAA 342 (464)
T ss_pred CeeEEEEEecCC-----------------------------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 57778877653 358999999999999999999999999999999
Q ss_pred hhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhcC---CCceeEeC
Q 016787 242 VEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQD---NTDLGYDA 316 (382)
Q Consensus 242 ~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~~---~~~~Gid~ 316 (382)
++++ +|||||++|+++++.|++++.. ++++++++++|++||++||++|++|||+|+.+++.+|++.| ..++|+|.
T Consensus 343 ~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~ 422 (464)
T cd00309 343 VEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDV 422 (464)
T ss_pred HHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEEC
Confidence 9996 9999999999999999998776 78999999999999999999999999999999999999877 34789999
Q ss_pred CCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhc
Q 016787 317 AKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV 358 (382)
Q Consensus 317 ~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~ 358 (382)
.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus 423 ~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 423 ETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred CCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999999999999999999999999999999999984
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.3e-52 Score=428.81 Aligned_cols=292 Identities=29% Similarity=0.514 Sum_probs=267.4
Q ss_pred EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHH-----------------------
Q 016787 11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTA----------------------- 67 (382)
Q Consensus 11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~----------------------- 67 (382)
...+|++.+|+ ++++|++|++++.++ +|++.+++|+|++++++++....
T Consensus 162 ~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 233 (485)
T PF00118_consen 162 IKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKY 233 (485)
T ss_dssp EEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHH
T ss_pred hhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhh
Confidence 45567777775 899999999999987 37888899999999999876655
Q ss_pred HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccC
Q 016787 68 VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKV 147 (382)
Q Consensus 68 l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l 147 (382)
+.++++++.+.|++|||++++|++.++++|..|+ |.+++ ++++++|++||++||++++++ ++++
T Consensus 234 l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~~i~-----~v~~~~l~~i~~~tg~~ii~~-----~~~l 297 (485)
T PF00118_consen 234 LKKILEKIINLGVNLIISQKSIDDEALQYLNKNG------ILVIR-----RVSKEDLERIARATGASIISS-----LDDL 297 (485)
T ss_dssp HHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCT------HEEES-----SEHHHHHHHHHHHHTSBEBSS-----CGGS
T ss_pred hccccceEeeeccceeeeecccccccchhhhhhh------hhccc-----cchHHHHHhhhcccCCcEecc-----cccc
Confidence 8899999999999999999999999999999998 46665 567999999999999999999 8899
Q ss_pred CcCCCceeeEE---EEecceEEEEcC--CCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016787 148 NLDMLGTCKKV---TISKDDTVILDG--AGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 222 (382)
Q Consensus 148 ~~~~lG~~~~v---~i~~~~~~~~~~--~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~ 222 (382)
+++.+|+|+++ +++++++++|++ +. .+..+||+|||+|+.
T Consensus 298 ~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till~g~t~~ 342 (485)
T PF00118_consen 298 SDEDLGFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILLRGPTEF 342 (485)
T ss_dssp TGGGSEEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEEEESSHH
T ss_pred cchhhhhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEeccccch
Confidence 88889999999 456789999983 33 357899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016787 223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300 (382)
Q Consensus 223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 300 (382)
+++|++++++||+++++++++++ +|||||++|++|++.|++++.. ++++++++++|++||+.||++|++|||+|+.++
T Consensus 343 ~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~ 422 (485)
T PF00118_consen 343 ELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEV 422 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceee
Confidence 99999999999999999999988 9999999999999999888776 788999999999999999999999999999999
Q ss_pred HHHHHhcC--CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016787 301 VGKLLEQD--NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 361 (382)
Q Consensus 301 i~~l~~~~--~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 361 (382)
+++|++.| +.++|+|+.+|++.||.+.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 423 ~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 423 ISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred ehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999854 57999999999999999999999999999999999999999999999998875
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-49 Score=371.42 Aligned_cols=298 Identities=24% Similarity=0.381 Sum_probs=273.3
Q ss_pred eEEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC--------------CHH--------
Q 016787 9 VITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS--------------NLT-------- 66 (382)
Q Consensus 9 ~i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~--------------~~~-------- 66 (382)
.|++..||+++|| .+-+|+.+++.+-.. +|+.++||+||+.+++++ +..
T Consensus 195 qIIK~~Gg~l~dS-fLDeGFlL~K~igv~--------qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~A 265 (527)
T KOG0363|consen 195 QIIKKLGGKLEDS-FLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKA 265 (527)
T ss_pred eeehhcCCccccc-cccccceeccccCCC--------CcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHH
Confidence 3677899999997 799999999887653 688999999999999744 221
Q ss_pred ---HHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc
Q 016787 67 ---AVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD 143 (382)
Q Consensus 67 ---~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~ 143 (382)
.+...+++|.+.|+|+.|..+-|.+...++|...+ |++|....|.. +|||+.+||+.+.|.
T Consensus 266 EkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dag------i~aIEHADFdG-----iERLalvtGGeI~ST----- 329 (527)
T KOG0363|consen 266 EKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAG------IMAIEHADFDG-----IERLALVTGGEIVST----- 329 (527)
T ss_pred HHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcC------cceeecccchh-----HHHHhhcccceeeec-----
Confidence 24567899999999999999999999999999888 78998887754 699999999999999
Q ss_pred cccCCcCCCceeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCc
Q 016787 144 LEKVNLDMLGTCKKVT---ISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGAS 220 (382)
Q Consensus 144 l~~l~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t 220 (382)
+++++...||+|+.++ +.++++.-|+|+. .|..|||++||+|
T Consensus 330 Fd~p~~~klG~C~~IeeimiGed~li~FSGv~-----------------------------------~GeActIVlrGat 374 (527)
T KOG0363|consen 330 FDNPELVKLGECDLIEEIMIGEDKLIKFSGVK-----------------------------------LGEACTIVLRGAT 374 (527)
T ss_pred cCCcchhccccchhhHHHhcCccceeeecccc-----------------------------------cccceEEEEeccc
Confidence 9999999999999988 6789999999976 3568999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHH
Q 016787 221 EAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGA 298 (382)
Q Consensus 221 ~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~ 298 (382)
.+++||.+|++|||||++....++. ++.|||+.||-.|..+.+++.. ++++..++.+|++||.++|.+||.|||||+.
T Consensus 375 ~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsa 454 (527)
T KOG0363|consen 375 QQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSA 454 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHH
Confidence 9999999999999999999999998 9999999999999999999887 8999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCC
Q 016787 299 VVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKE 366 (382)
Q Consensus 299 ~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~ 366 (382)
+++++|++.| ...+|+|+++|++.||.+.||+|++.+|...+.+|.|+|.+|||+|.||.+.|+++.+
T Consensus 455 elva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 455 ELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred HHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence 9999999988 4789999999999999999999999999999999999999999999999999998765
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-47 Score=360.80 Aligned_cols=291 Identities=19% Similarity=0.288 Sum_probs=260.0
Q ss_pred EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCC-------------CCHHH----------
Q 016787 11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKI-------------SNLTA---------- 67 (382)
Q Consensus 11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I-------------~~~~~---------- 67 (382)
.++.||+++|. ++++|++|++...... .|..+++++|-++.+.| +++.+
T Consensus 205 vkklGgtvdDt-e~i~glvl~~~~~~~~-------gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~ 276 (534)
T KOG0358|consen 205 VKKLGGTVDDT-ELIKGLVLTQKASKSA-------GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQ 276 (534)
T ss_pred HHhhCCccchh-hhhcceEEeeecccCC-------CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHH
Confidence 35689999886 9999999998765432 57778888888877753 34433
Q ss_pred -HHHHHHHHHHcCCCEEEEecCC-----cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCC
Q 016787 68 -VVRVLELALKRQRPLLIVAEDV-----ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELG 141 (382)
Q Consensus 68 -l~~~le~i~~~~~~lvI~~~~i-----~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~ 141 (382)
+++++++|+++|+||++++++| +|.++|||.+-+ |++|+ ++.++++|.+|+.+|++++.+
T Consensus 277 YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klk------imvik-----dieRediefick~l~c~Pia~--- 342 (534)
T KOG0358|consen 277 YILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLK------IMVIK-----DIEREDIEFICKTLGCKPIAD--- 342 (534)
T ss_pred HHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCc------EEEEc-----cccHhhHHHHHhhcCCeecch---
Confidence 4688999999999999999976 888888886555 89998 778999999999999999999
Q ss_pred CccccCCcCCCceeeEEEEe----cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEec
Q 016787 142 MDLEKVNLDMLGTCKKVTIS----KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIG 217 (382)
Q Consensus 142 ~~l~~l~~~~lG~~~~v~i~----~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lr 217 (382)
++.++++.||+++.++.. +.+++-+.|+.++ |.+++|++|
T Consensus 343 --id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~----------------------------------g~tvsil~R 386 (534)
T KOG0358|consen 343 --IDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA----------------------------------GRTVSILLR 386 (534)
T ss_pred --hhhcChhhcCcchhhhhcccCCCccEEEEEEeecC----------------------------------CCceEEEEe
Confidence 999999999999999854 3577888876542 679999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCC
Q 016787 218 GASEAEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGV 295 (382)
Q Consensus 218 G~t~~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~ 295 (382)
|+++..++|.+|++|||||++|+.++.. ++||||+.|+.+|..|..++.+ .+.+.|++++|++|||.||.+||+|||+
T Consensus 387 Gsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGL 466 (534)
T KOG0358|consen 387 GSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGL 466 (534)
T ss_pred cCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCC
Confidence 9999999999999999999999999998 9999999999999999999888 7889999999999999999999999999
Q ss_pred CHHHHHHHHHhcC---CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016787 296 EGAVVVGKLLEQD---NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359 (382)
Q Consensus 296 d~~~vi~~l~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 359 (382)
+|..++++|++.| ..+.|++++.|.+.||++..|+.|+.|-.++++.|+|++.+||+||+|+..
T Consensus 467 npI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 467 NPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred ChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999988 488999999999999999999999999999999999999999999999864
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=352.60 Aligned_cols=298 Identities=21% Similarity=0.294 Sum_probs=264.6
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHH-------
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVV------- 69 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~------- 69 (382)
+-+..|++++|| .++.|++|++..... ..+-+..+|.++.|| |+++++++
T Consensus 199 VcKi~Gg~l~~S-~Vv~GmVfkr~~eG~---------v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe 268 (537)
T KOG0362|consen 199 VCKILGGGLEDS-CVVCGMVFKRDPEGE---------VKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEE 268 (537)
T ss_pred EEEEecCCcccc-eeeEEEEeccccCCc---------ccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccH
Confidence 356789999987 899999999987654 244556778887777 66777654
Q ss_pred ----HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 70 ----RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 70 ----~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
..++.|..+|+++|++...+++.+|+++ |++ +|+++|.++ +.+|.|||+..||++.++ +.
T Consensus 269 ~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~S-----k~eLrrlcrtvGA~~l~r-----l~ 332 (537)
T KOG0362|consen 269 ALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQINS-----KFDLRRLCRTVGATALPR-----LF 332 (537)
T ss_pred HHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEecc-----HhhHHHHHHHcCCccchh-----cc
Confidence 4567888899999999999999999999 765 489999885 899999999999999999 88
Q ss_pred cCCcCCCceeeEEEEe---cceEEEEc-CCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016787 146 KVNLDMLGTCKKVTIS---KDDTVILD-GAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 221 (382)
Q Consensus 146 ~l~~~~lG~~~~v~i~---~~~~~~~~-~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~ 221 (382)
.+.+..+|+|++|... ...++.|. +++ .++++||+|||+|+
T Consensus 333 ~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~-----------------------------------~~~~~TvVLRgst~ 377 (537)
T KOG0362|consen 333 PPAPEELGYCDSVSTQEIGDTLVVVFRWEST-----------------------------------GTRVATVVLRGATQ 377 (537)
T ss_pred CCCCccccccceeeeeecCCceEEEEeeccC-----------------------------------CCceeEEEEcccch
Confidence 8999999999999965 35666665 332 24689999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016787 222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 299 (382)
Q Consensus 222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 299 (382)
..+|+.||+++|++++.+..++++ ++||+|++|++|+++|..++.. ++..|++++.|++||+.+|++|++|||++..+
T Consensus 378 s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~e 457 (537)
T KOG0362|consen 378 SILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTE 457 (537)
T ss_pred hhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHH
Confidence 999999999999999999999999 9999999999999999999887 89999999999999999999999999999999
Q ss_pred HHHHHHhcCC--CceeEeCCCC-ccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCCCC
Q 016787 300 VVGKLLEQDN--TDLGYDAAKG-EYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 368 (382)
Q Consensus 300 vi~~l~~~~~--~~~Gid~~~~-~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~ 368 (382)
++++|++.|. .+.|+|+... ...|+.++||||-+.+|.++++.|+++|+++|++|+||+++|...|+||
T Consensus 458 via~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~ 529 (537)
T KOG0362|consen 458 VIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPP 529 (537)
T ss_pred HHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCC
Confidence 9999999883 6679998776 5999999999999999999999999999999999999999999988886
No 39
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-46 Score=357.82 Aligned_cols=295 Identities=21% Similarity=0.289 Sum_probs=268.5
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC------------------------H
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN------------------------L 65 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~------------------------~ 65 (382)
+.+.+||.++|+ ++++|+.+.+...||. |+..++||+|+++|+++.. -
T Consensus 197 veKvpgg~l~~s-~vl~Gv~~nkdv~Hpk-------mrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqiee 268 (527)
T KOG0364|consen 197 VEKVPGGLLEDS-CVLKGVMINKDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEE 268 (527)
T ss_pred ccccCccccccc-ceecceeeccccCcHH-------HHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhH
Confidence 467899999997 8999999999999984 7888999999999998641 1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 66 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 66 ~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
+++..+++.|....++|||+.++++|.+.+||.+++ +.++| +.+|.|-.|++++||++++++ ++
T Consensus 269 e~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~------iT~~r-----r~rKtDn~ria~acga~iv~r-----pe 332 (527)
T KOG0364|consen 269 EQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKAN------ITAIR-----RLRKTDNNRIARACGARIVNR-----PE 332 (527)
T ss_pred HHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcC------chhhh-----hhhccccchhhhhcCceeccC-----hh
Confidence 235677888998999999999999999999999998 56665 678999999999999999999 99
Q ss_pred cCCcCCCce-eeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016787 146 KVNLDMLGT-CKKVTIS---KDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 221 (382)
Q Consensus 146 ~l~~~~lG~-~~~v~i~---~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~ 221 (382)
++...+.|+ |+.+++. +++|+||+.|.+|+ .|||++||||+
T Consensus 333 dl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pk-----------------------------------aCtillrg~sk 377 (527)
T KOG0364|consen 333 DLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPK-----------------------------------ACTILLRGPSK 377 (527)
T ss_pred hCchhccCcccceeeeeccCchhhhhhhhcCCCc-----------------------------------ceEEEeccCch
Confidence 999999996 8888875 57999999999874 69999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016787 222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 299 (382)
Q Consensus 222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 299 (382)
.+++|.+|.+.||+.+.|+.+-++ ++|||||+||.+|+.|.+.+.. ++-++..+++.+.||+.+||+|++|+|.++..
T Consensus 378 dil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir 457 (527)
T KOG0364|consen 378 DILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIR 457 (527)
T ss_pred hHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHH
Confidence 999999999999999999999999 9999999999999999987666 78899999999999999999999999999999
Q ss_pred HHHHHHhcCC---CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCcc
Q 016787 300 VVGKLLEQDN---TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 363 (382)
Q Consensus 300 vi~~l~~~~~---~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~ 363 (382)
+++.++..|. ..+|+|..+|.++||.+.++|+|+.+|.+..++|+++|+++||||++++..++.
T Consensus 458 ~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 458 ALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred HHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 9999998873 567899999999999999999999999999999999999999999999886654
No 40
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-46 Score=347.22 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=225.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccC
Q 016787 68 VVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKV 147 (382)
Q Consensus 68 l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l 147 (382)
+.+++++++++|.+++||+|+|||+|.|+|..|++ -||||.+- -++|-||++||++++++ ++++
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l------pavrwVGG-----pEiEliAiaT~grIVpr-----F~eL 207 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL------PAVRWVGG-----PEIELIAIATGGRIVPR-----FSEL 207 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC------CceeecCC-----cceEEEEeecCCeeecc-----Hhhh
Confidence 66789999999999999999999999999999995 58888763 36799999999999999 9999
Q ss_pred CcCCCceeeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016787 148 NLDMLGTCKKVTI-----SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 222 (382)
Q Consensus 148 ~~~~lG~~~~v~i-----~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~ 222 (382)
+++.||+|+.|.. ++++..+++.|+++ +.+||.|||+|+.
T Consensus 208 ~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifvRg~Nkm 252 (400)
T KOG0357|consen 208 TAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFVRGGNKM 252 (400)
T ss_pred CHhhccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEEecCcce
Confidence 9999999999884 36899999999874 5789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016787 223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300 (382)
Q Consensus 223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 300 (382)
+++|.+|++|||||++|+.+++. +|+|||++|+.||.++.+-+.. ++.+||++++|++||++||-.||+|||++|++.
T Consensus 253 ii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ 332 (400)
T KOG0357|consen 253 IIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIET 332 (400)
T ss_pred eHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhh
Confidence 99999999999999999999999 9999999999999999988877 899999999999999999999999999999999
Q ss_pred HHHHHhcC----CCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCC
Q 016787 301 VGKLLEQD----NTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 361 (382)
Q Consensus 301 i~~l~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 361 (382)
++++++.+ +..+|+|+.-..-.||.+.+|+|++..|++.+..||+++.|||+||+|+....
T Consensus 333 ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 333 LSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred hhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 99998864 68899999888889999999999999999999999999999999999987643
No 41
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-45 Score=354.19 Aligned_cols=302 Identities=19% Similarity=0.289 Sum_probs=266.0
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccC-------------CCCHHHHH-------
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKK-------------ISNLTAVV------- 69 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~-------------I~~~~~l~------- 69 (382)
|.+-.|.+.-|| .++.|+.+++...+.. |+..+.|+||+++|+. |.+++++.
T Consensus 200 ILkahG~s~~eS-~l~~GyaLnc~~asq~-------m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~ 271 (545)
T KOG0360|consen 200 ILKAHGKSQIES-MLLPGYALNCSVASQM-------MPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQ 271 (545)
T ss_pred EEecCCccchhh-eeecceeeeccHhhhc-------cccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHh
Confidence 456688888876 7999999999888765 7888899999999996 44565543
Q ss_pred ----HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCc-c
Q 016787 70 ----RVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMD-L 144 (382)
Q Consensus 70 ----~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~-l 144 (382)
+-+++|...|+|||+++++|||.++++|++.+ ++||| +..+++|++|+++||++++++...+. -
T Consensus 272 ~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAVr-----R~~k~dlk~iakatGat~~sSla~l~ge 340 (545)
T KOG0360|consen 272 DITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RCKKEDLKRIAKATGATLLSSLANLEGE 340 (545)
T ss_pred HhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH-----HHHHHHHHHHHHhhCCeeeehhhccccc
Confidence 33678999999999999999999999999998 68888 66799999999999999999922221 1
Q ss_pred ccCCcCCCceeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCch
Q 016787 145 EKVNLDMLGTCKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASE 221 (382)
Q Consensus 145 ~~l~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~ 221 (382)
+.+.+..+|+|+.|.+ .++++.++.+.+- ..|.|+|||+|+
T Consensus 341 etf~~~~lG~a~evvqeri~dde~ilikg~ka------------------------------------~~aSiILrgaNd 384 (545)
T KOG0360|consen 341 ETFEPASLGSADEVVQERIGDDELILIKGTKA------------------------------------TSASIILRGAND 384 (545)
T ss_pred cccChhhccchhHHHHHhcccceeEEeccCcc------------------------------------ceeeEEEecCCc
Confidence 2457888999999985 4688888877431 378999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHH
Q 016787 222 AEVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAV 299 (382)
Q Consensus 222 ~~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~ 299 (382)
+.+||.+|++|||+|++|..++++ +|||||++|.+|+-+|++|+.+ ..++|+++--|+.||.+||++|+-||..|+.+
T Consensus 385 ~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dste 464 (545)
T KOG0360|consen 385 FMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTE 464 (545)
T ss_pred ccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhcccccc
Confidence 999999999999999999999999 9999999999999999999888 67999999999999999999999999999999
Q ss_pred HHHHHHhcCC-----------CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhccCCccCCC
Q 016787 300 VVGKLLEQDN-----------TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKE 366 (382)
Q Consensus 300 vi~~l~~~~~-----------~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~ 366 (382)
+++++++.|+ .|+|+|+.+|++.|.++.|+++|..+|..+|+.|+|+|..+||||++|.-.|..+..
T Consensus 465 lvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~~ 542 (545)
T KOG0360|consen 465 LVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQVA 542 (545)
T ss_pred ccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccccc
Confidence 9999999872 589999999999999999999999999999999999999999999999776666554
No 42
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-41 Score=321.98 Aligned_cols=287 Identities=21% Similarity=0.350 Sum_probs=253.0
Q ss_pred eCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC-------------CHHH-----------HH
Q 016787 14 DGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS-------------NLTA-----------VV 69 (382)
Q Consensus 14 ~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~-------------~~~~-----------l~ 69 (382)
...+..|. .+++|+++++|..||. ||+.++|+.||+++..++ +.+| +.
T Consensus 194 q~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~ 265 (520)
T KOG0359|consen 194 QHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFID 265 (520)
T ss_pred ccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHH
Confidence 33455665 7999999999999996 799999999999998754 2222 12
Q ss_pred HHHHHHHHcC---CCE-EEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc
Q 016787 70 RVLELALKRQ---RPL-LIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE 145 (382)
Q Consensus 70 ~~le~i~~~~---~~l-vI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~ 145 (382)
.-+.+|.+.+ +.+ ||.+++|||..|..|++++ |+|+|+ -++..||||..+||+..+++ ++
T Consensus 266 ~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~g------IlaLRR-----AKRRNmERL~lacGG~a~ns-----vd 329 (520)
T KOG0359|consen 266 QRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSG------ILALRR-----AKRRNMERLVLACGGEAVNS-----VD 329 (520)
T ss_pred HHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcc------hHHHHH-----HhhhhHHHHHHhhccceecc-----cc
Confidence 2334555444 334 5668899999999999998 688884 46889999999999999999 99
Q ss_pred cCCcCCCceeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchh
Q 016787 146 KVNLDMLGTCKKVTI---SKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA 222 (382)
Q Consensus 146 ~l~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~ 222 (382)
++++++||+|+.++. ++++|+|+++|++| +.|||+++|||++
T Consensus 330 dLtp~~LG~aglVye~tlGEEkfTFIE~~~~p-----------------------------------~S~TiLikgpnkh 374 (520)
T KOG0359|consen 330 DLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP-----------------------------------SSVTILIKGPNKH 374 (520)
T ss_pred cCChhhccccceeEEeeccceeeEeeecCCCC-----------------------------------cceEEEEeCCccc
Confidence 999999999999995 58999999999987 3689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-ccccchHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHH
Q 016787 223 EVGEKKDRVTDALNATKAAVEEG-IVPGGGVALLYAAKELEKLSTA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVV 300 (382)
Q Consensus 223 ~l~E~~r~l~dal~~~~~a~~~g-vvpGGGa~e~~ls~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v 300 (382)
.+.+.+++++|++++++++++++ ++||+|+.|..++..|+....+ +++.++++++|++||..+|++|++|+|+|+.+.
T Consensus 375 t~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~ 454 (520)
T KOG0359|consen 375 TITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQET 454 (520)
T ss_pred hHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHH
Confidence 99999999999999999999999 9999999999999999976665 789999999999999999999999999999999
Q ss_pred HHHHHhcCC-CceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHHhhchhhhhcc
Q 016787 301 VGKLLEQDN-TDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 359 (382)
Q Consensus 301 i~~l~~~~~-~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 359 (382)
+.+|...|. ...|+|+.+|+..+....||||.+.||.+.|.+++-.|+.||-+|+|+.+
T Consensus 455 l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 455 LVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred HHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 999988773 35799999999999999999999999999999999999999999999976
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.96 E-value=5.2e-28 Score=229.55 Aligned_cols=177 Identities=16% Similarity=0.256 Sum_probs=154.7
Q ss_pred EEEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCC------HHH-----------HHHHH
Q 016787 10 ITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISN------LTA-----------VVRVL 72 (382)
Q Consensus 10 i~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~------~~~-----------l~~~l 72 (382)
|.+.+|+++.|+ ++++|+++++++.++. |++.++||+|++++++++. +++ +..++
T Consensus 52 I~ki~Ggs~~dS-~li~Gvvi~k~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v 123 (261)
T cd03334 52 IKKIPGGSPSDS-EVVDGVVFTKNVAHKR-------MPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLV 123 (261)
T ss_pred EEEecCCCHHHc-EEEeeEEEeCCCCCcc-------CCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 466799999986 8999999999998864 7899999999999998752 222 34678
Q ss_pred HHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccc-cCCcCC
Q 016787 73 ELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLE-KVNLDM 151 (382)
Q Consensus 73 e~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~-~l~~~~ 151 (382)
++|++.|++|||++++|++.++++|.+++ |++|++ +++++|++||++|||+++++ +. .++++.
T Consensus 124 ~kI~~~g~nvIl~~k~I~~~a~~~l~k~g------I~~v~~-----v~~~dl~rIa~~tGa~ii~~-----i~~~~~~~~ 187 (261)
T cd03334 124 SRIVALRPDVILVEKSVSRIAQDLLLEAG------ITLVLN-----VKPSVLERISRCTGADIISS-----MDDLLTSPK 187 (261)
T ss_pred HHHHhcCCCEEEECCccCHHHHHHHHHCC------CEEEEe-----cCHHHHHHHHHHhCCEEecC-----hhhhcCccc
Confidence 89999999999999999999999999988 688884 46899999999999999998 54 678889
Q ss_pred CceeeEEEEec--------ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhH
Q 016787 152 LGTCKKVTISK--------DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAE 223 (382)
Q Consensus 152 lG~~~~v~i~~--------~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~ 223 (382)
||+|+.|++.+ ++++||++|..+ ..+||+|||+|+.+
T Consensus 188 lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~-----------------------------------~~~TIlLRG~t~~~ 232 (261)
T cd03334 188 LGTCESFRVRTYVEEHGRSKTLMFFEGCPKE-----------------------------------LGCTILLRGGDLEE 232 (261)
T ss_pred CcCcceEEEEEecCcCCCceeEEEEecCCCC-----------------------------------ceeEEEEECCCHHH
Confidence 99999999753 489999998743 47999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 016787 224 VGEKKDRVTDALNATKAAVEEG 245 (382)
Q Consensus 224 l~E~~r~l~dal~~~~~a~~~g 245 (382)
++|.+|+++||+++++++..+.
T Consensus 233 lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 233 LKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999988765
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.95 E-value=2e-26 Score=211.92 Aligned_cols=162 Identities=32% Similarity=0.505 Sum_probs=143.9
Q ss_pred CceE--EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q 016787 7 EGVI--TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 84 (382)
Q Consensus 7 ~g~i--~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI 84 (382)
.+.| .+.+||++.|+ ++++|++|++++.+|+ |++.++||+|++++++++. ||+
T Consensus 43 ~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~-------m~~~~~n~~Ill~~~~le~-----------------vii 97 (209)
T cd03333 43 LGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY-------MPKRLENAKILLLDCPLEY-----------------VVI 97 (209)
T ss_pred hHHEEEEEecCcChhhc-eeEeeEEEeccccCCC-------CCeEcCCCcEEEEeCCeeE-----------------EEE
Confidence 3455 45689999986 8999999999999986 6888999999999999887 888
Q ss_pred EecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCceeeEEEEec--
Q 016787 85 VAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISK-- 162 (382)
Q Consensus 85 ~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG~~~~v~i~~-- 162 (382)
++++|++.++++|.+++ |++|++ +++++|+|||++|||+++++ +++++++.||+|+++++.+
T Consensus 98 ~~~~I~~~al~~l~~~~------I~~v~~-----~~~~~l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~ 161 (209)
T cd03333 98 AEKGIDDLALHYLAKAG------IMAVRR-----VKKEDLERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIG 161 (209)
T ss_pred ecCcccHHHHHHHHHCC------CEEEEe-----CCHHHHHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEEC
Confidence 89999999999999887 788984 56899999999999999999 8899999999999999874
Q ss_pred -ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHH
Q 016787 163 -DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAA 241 (382)
Q Consensus 163 -~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a 241 (382)
+++++|.+|.. +..|||+|||+|+.+++|.+|+++||+++++++
T Consensus 162 ~~~~~~~~~~~~-----------------------------------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~ 206 (209)
T cd03333 162 EEKLTFIEGCKG-----------------------------------GKAATILLRGATEVELDEVKRSLHDALCAVRAA 206 (209)
T ss_pred CeEEEEEEcCCC-----------------------------------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHH
Confidence 46888887754 358999999999999999999999999999999
Q ss_pred hhc
Q 016787 242 VEE 244 (382)
Q Consensus 242 ~~~ 244 (382)
+++
T Consensus 207 ~~~ 209 (209)
T cd03333 207 VEE 209 (209)
T ss_pred hhC
Confidence 864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.37 E-value=3.8e-12 Score=139.15 Aligned_cols=185 Identities=16% Similarity=0.272 Sum_probs=151.2
Q ss_pred EEEeCCccceeeEEEEeEEEeecccCcccccccccCceeecCceEEEeccCCC---------CHHH--------HHHHHH
Q 016787 11 TIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKIS---------NLTA--------VVRVLE 73 (382)
Q Consensus 11 ~~~~G~~~~d~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~I~---------~~~~--------l~~~le 73 (382)
...+||+..|+ +++.|+++.+...+.. |..++++|+|+++.+++. +++. +...+.
T Consensus 367 K~I~~g~~~dS-~vi~Gvv~sKn~~~k~-------M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~va 438 (1598)
T KOG0230|consen 367 KCVAGGSRVDS-EVIKGVVCSKNVAHKR-------MATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVA 438 (1598)
T ss_pred EEecCCCcccc-eeeeEEEeecchhhhh-------hhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHH
Confidence 44688888886 9999999999988764 778899999999998743 3322 334567
Q ss_pred HHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCCCc
Q 016787 74 LALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLG 153 (382)
Q Consensus 74 ~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~lG 153 (382)
+|.....+++++.++++..|.++|...++ .+++ ++++..|+||+++|||.|+++ ++.++...||
T Consensus 439 rI~s~~p~vllVeksVS~~aqe~L~~k~I-----~lvl------nvK~s~leRIsR~tga~I~~s-----iDslt~~klg 502 (1598)
T KOG0230|consen 439 RIESLRPDVLLVEKSVSRIAQELLLDKGI-----SLVL------NVKRSLLERISRCTGADIVPS-----VDSLTSQKLG 502 (1598)
T ss_pred HHHhcCCCeEEEechHHHHHHHHhhccCe-----EEEE------eccHHHHHHHHHHhcCceecc-----hhhhhccccC
Confidence 77778899999999999999999977664 2232 567889999999999999999 8889999999
Q ss_pred eeeEEEEec--------ceEEEEcCCCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeEEEEecCCchhHHH
Q 016787 154 TCKKVTISK--------DDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVG 225 (382)
Q Consensus 154 ~~~~v~i~~--------~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~ 225 (382)
+|..+++.+ ..++||.+|+.+ ..|||++||.+..++.
T Consensus 503 ~C~~F~v~~~~e~hk~sKTlmffegc~~~-----------------------------------lG~TiLLrG~~~~eLk 547 (1598)
T KOG0230|consen 503 YCELFRVENYVEEHKPSKTLMFFEGCPKP-----------------------------------LGCTILLRGDSLEELK 547 (1598)
T ss_pred CCccHhhhhhhhcccchhhhHHhhcCCCC-----------------------------------CCceEEecCCCHHHHH
Confidence 999999752 467788998864 3589999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hhcCccccchHHH
Q 016787 226 EKKDRVTDALNATKAA-VEEGIVPGGGVAL 254 (382)
Q Consensus 226 E~~r~l~dal~~~~~a-~~~gvvpGGGa~e 254 (382)
++++-+.-++.++.+. ++..++.--|+..
T Consensus 548 kVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 548 KVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 9999999999998855 4555777777754
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0007 Score=70.57 Aligned_cols=94 Identities=48% Similarity=0.713 Sum_probs=82.3
Q ss_pred HHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCccccCCcCC
Q 016787 72 LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDM 151 (382)
Q Consensus 72 le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l~~l~~~~ 151 (382)
++...+.+.++++++++...+++..++.|.+++..++++|+.|+|+|.++..|++++++|+.++.+++.+ .....
T Consensus 237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~ 311 (524)
T COG0459 237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG-----ERLAK 311 (524)
T ss_pred ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-----HHHHH
Confidence 5666677788999999999999999999999999999999999999999999999999999999988632 25677
Q ss_pred CceeeEEEEecceEEEEcC
Q 016787 152 LGTCKKVTISKDDTVILDG 170 (382)
Q Consensus 152 lG~~~~v~i~~~~~~~~~~ 170 (382)
+|.|..+.+.++.+....|
T Consensus 312 ~~ga~~v~~~~d~t~~~~G 330 (524)
T COG0459 312 LGGAKIVSVLKDLTTIVLG 330 (524)
T ss_pred ccCceEEeecccCceeecC
Confidence 9999999998887766665
No 47
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=58.42 E-value=5 Score=35.64 Aligned_cols=13 Identities=62% Similarity=1.229 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 016787 370 GMGGMGGMGGMDY 382 (382)
Q Consensus 370 ~~~~~~~~~~~~~ 382 (382)
+|||||||.++||
T Consensus 136 ~mggmgg~~~~Df 148 (180)
T KOG3158|consen 136 MMGGMGGAEGVDF 148 (180)
T ss_pred ccccCCccccccc
Confidence 6788888888776
No 48
>smart00574 POX domain associated with HOX domains.
Probab=47.51 E-value=87 Score=26.94 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhc-CccccchHHHHHHHHHHHH
Q 016787 193 SDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE-GIVPGGGVALLYAAKELEK 263 (382)
Q Consensus 193 s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~-gvvpGGGa~e~~ls~~L~~ 263 (382)
+.-||..+..+.++|- ..++|++++++--..-++..+.+ ..|+|.|++-.+.+.+|+.
T Consensus 68 s~~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a 126 (140)
T smart00574 68 STAERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKT 126 (140)
T ss_pred chhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4556667777776663 35677777777666666655555 3788998888887766654
No 49
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=45.52 E-value=29 Score=32.68 Aligned_cols=73 Identities=16% Similarity=0.043 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCcc
Q 016787 65 LTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 144 (382)
Q Consensus 65 ~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l 144 (382)
.+++.++.+++.+.| +.+++..+|..++.+|...+ +-++|.++..-.....|+.+|. ||-.++-+....++
T Consensus 55 ~e~~~~L~~~~~~~g--i~f~stpfd~~s~d~l~~~~------~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl 125 (241)
T PF03102_consen 55 EEQHKELFEYCKELG--IDFFSTPFDEESVDFLEELG------VPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTL 125 (241)
T ss_dssp HHHHHHHHHHHHHTT---EEEEEE-SHHHHHHHHHHT-------SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--H
T ss_pred HHHHHHHHHHHHHcC--CEEEECCCCHHHHHHHHHcC------CCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCH
Confidence 455667777777654 66788888999999997766 6688888765445567777777 99998877433344
Q ss_pred cc
Q 016787 145 EK 146 (382)
Q Consensus 145 ~~ 146 (382)
++
T Consensus 126 ~E 127 (241)
T PF03102_consen 126 EE 127 (241)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 50
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=44.09 E-value=27 Score=33.91 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=36.9
Q ss_pred eeecCceEEEeccCCCCH-----HHHHHHHHHHH-HcCCCEEEEecCCcHH
Q 016787 48 CELEDPLILVHEKKISNL-----TAVVRVLELAL-KRQRPLLIVAEDVESE 92 (382)
Q Consensus 48 ~~l~~p~Ill~d~~I~~~-----~~l~~~le~i~-~~~~~lvI~~~~i~~~ 92 (382)
.-++.|.+|+.|.|+.+. .|++|++|.+. +.+.|+|-++.++++.
T Consensus 142 ALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev 192 (352)
T COG4148 142 ALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV 192 (352)
T ss_pred HHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHH
Confidence 346889999999997764 47999999987 4569999999998665
No 51
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=43.37 E-value=50 Score=29.47 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=33.2
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCcHHHHHH
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVESEALAT 96 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~ 96 (382)
..+|.++++|.|... .+.+.++++.+.+.+.-+|++..+.+......
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 178 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFEL 178 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHh
Confidence 468899999998543 44577777777666777888888876544443
No 52
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=41.85 E-value=29 Score=30.70 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=21.0
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|... .+.+.+++..+.+.+..+|++..+.
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 144 MRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 46666666666332 2345555555554455566655543
No 53
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.15 E-value=38 Score=30.11 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=33.1
Q ss_pred eecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCcHHHHHH
Q 016787 49 ELEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVESEALAT 96 (382)
Q Consensus 49 ~l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~ 96 (382)
-+.+|+++++|.|... .+.+..+++.+.+.+.-+|++..+.++.+...
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~ 175 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEK 175 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhh
Confidence 3468899999998543 34567777777666777888888876443343
No 54
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=40.32 E-value=2.6e+02 Score=30.26 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=7.1
Q ss_pred eEEEEeCCcccee
Q 016787 9 VITIHDGKTLYNE 21 (382)
Q Consensus 9 ~i~~~~G~~~~d~ 21 (382)
++....|++.-|-
T Consensus 196 vlv~D~GggT~dv 208 (653)
T PTZ00009 196 VLIFDLGGGTFDV 208 (653)
T ss_pred EEEEECCCCeEEE
Confidence 4455566655553
No 55
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=40.30 E-value=29 Score=32.11 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=30.6
Q ss_pred ceeecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 47 KCELEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 47 ~~~l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.-+++|+|+++|.|.+ +...+.+++.++++.|.-+|+.+...
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m 193 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM 193 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH
Confidence 34568999999999844 55667888888887775555555443
No 56
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=37.94 E-value=64 Score=30.67 Aligned_cols=58 Identities=9% Similarity=0.111 Sum_probs=40.4
Q ss_pred HHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCe
Q 016787 72 LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 134 (382)
Q Consensus 72 le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ 134 (382)
+|.|....++|||.....++.....|...++ ++..+......++ .+.++.++.++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi----~v~~~~~~~~~~~-~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGV----EATFLNLTSVDGM-KKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCC----cEEEEcCCCHHHH-HHHHHHHHHHhCCH
Confidence 6889999999999987888887788866654 3555543222222 46678888877764
No 57
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=37.03 E-value=49 Score=30.16 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=27.5
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHH
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVESEALATL 97 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L 97 (382)
.+|+++++|.|.. +.+++..++..+.+.+.-+|++.....+++..+.
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~ 211 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLF 211 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhC
Confidence 4677777777643 2344556666555556666667666644444433
No 58
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=36.80 E-value=37 Score=29.44 Aligned_cols=42 Identities=5% Similarity=0.222 Sum_probs=29.9
Q ss_pred eecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 49 ELEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 49 ~l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
-+.+|+++++|.|-.. .+++.+++..+.+.+..+|++..+.+
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4578999999998543 44567777776656777778877743
No 59
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=36.69 E-value=1.3e+02 Score=25.87 Aligned_cols=58 Identities=29% Similarity=0.353 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHHHhhc-CccccchHHHHHHHHHHHH
Q 016787 193 SDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEE-GIVPGGGVALLYAAKELEK 263 (382)
Q Consensus 193 s~~~~~~l~~rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~a~~~-gvvpGGGa~e~~ls~~L~~ 263 (382)
++-++..+..+.++|- ..++|+.++++--..=++..+.+ .-|.|.|++-.+.+.+|+.
T Consensus 68 s~~~~~e~q~kK~KLl-------------~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqa 126 (140)
T PF07526_consen 68 SPAERQELQRKKAKLL-------------SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQA 126 (140)
T ss_pred ChhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 3456666666666664 34666666666555555544444 2688999988887766654
No 60
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=36.40 E-value=46 Score=31.60 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=36.1
Q ss_pred eecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCcHH
Q 016787 49 ELEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVESE 92 (382)
Q Consensus 49 ~l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~~~ 92 (382)
-..+|.++++|.|... ..++.++++.+++.|+-++++..+++..
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v 202 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV 202 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh
Confidence 3579999999999553 4568899999998899999999997543
No 61
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=35.88 E-value=44 Score=29.97 Aligned_cols=38 Identities=3% Similarity=0.154 Sum_probs=19.6
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|+++++|.|-.. .+++.++++.+.+.+..++++..+
T Consensus 146 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 188 (204)
T PRK13538 146 TRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQ 188 (204)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 46666666666332 233445555444444555555555
No 62
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=35.21 E-value=62 Score=33.86 Aligned_cols=43 Identities=12% Similarity=0.356 Sum_probs=36.4
Q ss_pred ecCceEEEeccC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCcHH
Q 016787 50 LEDPLILVHEKK-----ISNLTAVVRVLELALKRQRPLLIVAEDVESE 92 (382)
Q Consensus 50 l~~p~Ill~d~~-----I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~ 92 (382)
..+|+||++|.| |..-.++..++..+...|..+|+++.+.++.
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEl 464 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPEL 464 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 479999999998 4566789999999999999999888886443
No 63
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=35.04 E-value=43 Score=30.10 Aligned_cols=40 Identities=18% Similarity=0.399 Sum_probs=25.0
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|+++++|.|... .+.+.++++.+.+.+.-++++..+.
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 357778888877442 3345666666655566666666664
No 64
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=34.78 E-value=40 Score=30.25 Aligned_cols=40 Identities=13% Similarity=0.324 Sum_probs=23.8
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|+++++|.|-.. .+.+.+++..+.+.+..++++..+.
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356777777777432 3345566666655555666666654
No 65
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=34.75 E-value=49 Score=30.23 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=22.4
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|+++++|.|.. +.+.+.+++..+.+.+..+|++..+.
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~ 173 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35666777666633 23345555555554455566666654
No 66
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=33.94 E-value=43 Score=30.20 Aligned_cols=40 Identities=20% Similarity=0.442 Sum_probs=25.3
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|+++++|.|... .+++.+++..+.+.+..+|++..+.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 457778888887442 3345666666655566677777764
No 67
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=33.62 E-value=51 Score=29.68 Aligned_cols=40 Identities=5% Similarity=0.116 Sum_probs=26.4
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|+++++|.|... .+++..++..+.+.+..+|++..+.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 187 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP 187 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 357788888887442 3456666766655667777777764
No 68
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=33.15 E-value=53 Score=29.94 Aligned_cols=39 Identities=15% Similarity=0.392 Sum_probs=20.3
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|.. +.+++..+++.+.+.+..+|++..+.
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 193 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4566666666633 22345555555544455555555553
No 69
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=33.12 E-value=51 Score=28.74 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=30.5
Q ss_pred eecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 49 ELEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 49 ~l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
-+.+|+++++|.|.. +.+++.+.+..+.+.+.-++++..+.+
T Consensus 111 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 111 LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 357899999999854 344567777777666777888888764
No 70
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=32.85 E-value=49 Score=29.93 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=21.8
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|-.. .+.+..++..+.+.+.-+|++..+.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA 197 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 46667777776432 2345555555555555555665553
No 71
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=32.83 E-value=1.4e+02 Score=24.66 Aligned_cols=42 Identities=33% Similarity=0.325 Sum_probs=31.9
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHH
Q 016787 56 LVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLIL 99 (382)
Q Consensus 56 ll~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~ 99 (382)
.++|+. +++...+.++.+.+.++++|+-..+++++-+..+.+
T Consensus 70 VvIDfT--~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFT--NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEEcC--ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 344554 778888899999999999999999999988887765
No 72
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=32.56 E-value=1.2e+02 Score=26.32 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=35.7
Q ss_pred HHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCC-CCcchhhhHHHHHHHHCC
Q 016787 72 LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPG-FGENRKANMQDLAVLTGG 133 (382)
Q Consensus 72 le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~-~~~~~~~~le~la~~tG~ 133 (382)
+|.+.+.+++|||............|...++ .+..+.... +.+ -.+.++.|+.++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi----~v~~~~~~~~~~~-~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGI----PVVVLPAASSLDE-IYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCC----cEEEeCCCCCHHH-HHHHHHHHHHHhCC
Confidence 6888889999998866555556667766654 345554322 111 24566677777665
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=32.26 E-value=47 Score=30.71 Aligned_cols=39 Identities=15% Similarity=0.368 Sum_probs=18.3
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|-. +...+.++++.+.+.+..+|++..+.
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4555555555532 12334444444444444455555443
No 74
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=32.09 E-value=48 Score=29.82 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=23.7
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
.+|+++++|.|-.. ...+.+++..+.+.+.-+|++..+.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 56777777777432 33455666655555556666666643
No 75
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=31.88 E-value=50 Score=29.61 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=23.8
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|+++++|.|.+. .+.+.+++....+.+..+|++..+.
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356777777777442 3345566655554466666666664
No 76
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=31.76 E-value=45 Score=29.83 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=23.9
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|.++++|.|... .+.+.+++..+.+.+..+|++..+.+
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 356777777777442 33455666655555566666666643
No 77
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=31.50 E-value=50 Score=30.21 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=22.9
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
.+|.++++|.|-.. ...+.+++..+.+.+..+|++..+.+
T Consensus 160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 204 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD 204 (236)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 46667777776332 33455556555555556666666643
No 78
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=31.19 E-value=61 Score=28.50 Aligned_cols=40 Identities=13% Similarity=0.375 Sum_probs=28.3
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|.++++|.|... .+++.+++..+.+.+.-++++..+.
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999998543 3456677777665566777777764
No 79
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=31.11 E-value=2.1e+02 Score=22.32 Aligned_cols=54 Identities=26% Similarity=0.246 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCe
Q 016787 71 VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 134 (382)
Q Consensus 71 ~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ 134 (382)
-++.+.+-...+|+++.|+++....-|..---+..++++=| + .+++|.++||-.
T Consensus 21 t~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V--~--------s~~~LGkAcgi~ 74 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF--K--------SKHALGKHVGIN 74 (84)
T ss_pred HHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE--C--------CHHHHHHHhCCC
Confidence 34555555688999999999987765442111112334333 2 357888888865
No 80
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=30.97 E-value=49 Score=30.88 Aligned_cols=39 Identities=15% Similarity=0.430 Sum_probs=20.7
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|.++++|.|.. +.+.+.+++..+.+.+..+|++..+.
T Consensus 169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 169 MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4566666666633 22344555555554455556665553
No 81
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=30.68 E-value=53 Score=29.82 Aligned_cols=38 Identities=5% Similarity=0.209 Sum_probs=19.6
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|+++++|.|... .+.+.+++..+.+.+..+|++..+
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~ 183 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI 183 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45666666666332 233445555544444455555555
No 82
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=30.66 E-value=53 Score=30.14 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=22.2
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|... .+.+..++..+.+.+.-+|++..+.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 46667777776432 3345555655555455566666654
No 83
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=30.58 E-value=56 Score=29.28 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=20.7
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|.++++|.|-. +.+++..++..+.+.+..+|++..+.
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 186 (208)
T cd03268 143 GNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL 186 (208)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4666666666633 23345555555554455555555553
No 84
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=30.53 E-value=56 Score=30.02 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=19.6
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|.. +.+++.+++....+.+.-++++..+.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 196 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI 196 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4566666666533 22334455554444455555555554
No 85
>PRK04247 hypothetical protein; Provisional
Probab=30.43 E-value=1.4e+02 Score=28.09 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHcC---CCEEEEecCCcHHHHHHHHHccccCCceEEEEecC
Q 016787 64 NLTAVVRVLELALKRQ---RPLLIVAEDVESEALATLILNKLRAGIKVCAIKAP 114 (382)
Q Consensus 64 ~~~~l~~~le~i~~~~---~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~ 114 (382)
-+.|+...++.+++.. +..|+++.+|++.|..+|...+++ ++.+.+|
T Consensus 187 ~V~Ql~rY~~~~~~~~~~~VRGilvAp~i~~~A~~ll~~~Gle----~~~l~p~ 236 (238)
T PRK04247 187 AVSQLKRYVEALRELHGDKVRGILVAPSITDRARRLLEKEGLE----FVKLEPP 236 (238)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEECCcCCHHHHHHHHHcCCe----EEEecCC
Confidence 3677877777776443 445899999999999999999874 6666543
No 86
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=30.27 E-value=51 Score=30.24 Aligned_cols=38 Identities=11% Similarity=0.280 Sum_probs=16.7
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|+|+++|.|-. +.+.+...+..+.+.+.-+|++..+
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 3555555555532 1223444444444334444444444
No 87
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=30.25 E-value=2.8e+02 Score=25.24 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=47.5
Q ss_pred ceeecCceEEEeccCCCCHHHHHHHHHHHHHcC-CCEEEEecCCcHHHHHHHHHccccCCceEEEEe
Q 016787 47 KCELEDPLILVHEKKISNLTAVVRVLELALKRQ-RPLLIVAEDVESEALATLILNKLRAGIKVCAIK 112 (382)
Q Consensus 47 ~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~-~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~ 112 (382)
+..+++-.|+++|--|.+-..+...++.+++.| .++.++.--..+.+++.+..+.-.-.+.+.+|.
T Consensus 119 p~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~ll~~~~gl~~l~~~~p~v~i~~~~iD 185 (209)
T PRK00129 119 PEDIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCLVAAPEGIKALEEAHPDVEIYTAAID 185 (209)
T ss_pred CCcCCCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEEecCHHHHHHHHHHCCCcEEEEEeec
Confidence 334566679999998999999999999999988 455555556678888888766543334444443
No 88
>PRK10908 cell division protein FtsE; Provisional
Probab=30.03 E-value=55 Score=29.68 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=21.3
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|... .+++...+..+.+.+..+|++..+.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 56666666666332 2345555555544455556666653
No 89
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=29.91 E-value=59 Score=29.19 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=23.5
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|+++++|.|-.. .+.+.+.++.+.+.+.-+|++..+.
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 357777777777432 3345555655554555566666653
No 90
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=29.88 E-value=54 Score=30.23 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=26.3
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|+|+++|.|... .+.+.+++..+.+.+.-+|++..+.+
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 467888888887443 34456666666655666777777643
No 91
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=29.74 E-value=66 Score=28.97 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=29.2
Q ss_pred eecCceEEEeccCCCC-----HHHHHHHHHHHHH-cCCCEEEEecCCcH
Q 016787 49 ELEDPLILVHEKKISN-----LTAVVRVLELALK-RQRPLLIVAEDVES 91 (382)
Q Consensus 49 ~l~~p~Ill~d~~I~~-----~~~l~~~le~i~~-~~~~lvI~~~~i~~ 91 (382)
-+.+|.++++|.|... .+++.+++..+.+ .+.-+|++..+.+.
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 155 LANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred HccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 3467888888888543 3456677776665 46777788887654
No 92
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=29.56 E-value=61 Score=28.41 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=28.8
Q ss_pred eecCceEEEeccCCC-----CHHHHHHHHHHHHHc-CCCEEEEecCCc
Q 016787 49 ELEDPLILVHEKKIS-----NLTAVVRVLELALKR-QRPLLIVAEDVE 90 (382)
Q Consensus 49 ~l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~-~~~lvI~~~~i~ 90 (382)
-+.+|.++++|.|-. +.+.+.++++.+.+. +.-++++..+.+
T Consensus 112 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 357899999999854 344566777776654 667777777644
No 93
>PRK06683 hypothetical protein; Provisional
Probab=29.47 E-value=2.1e+02 Score=22.08 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeE
Q 016787 71 VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDL 135 (382)
Q Consensus 71 ~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~i 135 (382)
.++.+++..+.+||++.+.++...+-+..---...+++.-+ ...++|..++|-.+
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~----------~t~~eLG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKV----------ESVRKLGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEE----------CCHHHHHHHhCCcc
Confidence 34666666689999999999988777642111111223221 24588999998754
No 94
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=29.41 E-value=88 Score=25.07 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=42.1
Q ss_pred hHHHHHHHcCCCHHHHHHHHHhcCCCceeEeCCCCccccccccCccccchhHHHHHHHHHHHHHH
Q 016787 285 PVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSL 349 (382)
Q Consensus 285 ip~~L~~NaG~d~~~vi~~l~~~~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~ 349 (382)
+-..|..|.++.--.++++|... +||| +++-++...||||.....+++..++.-+..
T Consensus 30 fN~~L~~s~~frNP~i~ekLi~~----~~Id----e~gTn~p~~i~dP~~~~~~~y~e~L~k~Qk 86 (96)
T PF07818_consen 30 FNDRLQNSKSFRNPSILEKLIEF----FGID----EYGTNFPKDIFDPHGFPEEDYYEELAKAQK 86 (96)
T ss_pred HHHHHHHccccCChHHHHHHHHH----cCCC----cccCCCChhhcCCCCCCHHHHHHHHHHHHH
Confidence 34456677777656777887753 6777 467778888999999999999888766553
No 95
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.85 E-value=62 Score=29.30 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=21.6
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
+.+|.++++|.|... .+.+.+++..+.+. +..+|++..+.
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 356666666666432 23455555555443 55566666654
No 96
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=28.74 E-value=3.2e+02 Score=24.76 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=46.2
Q ss_pred ceeecCceEEEeccCCCCHHHHHHHHHHHHHcCC-CEEEEecCCcHHHHHHHHHccccCCceEEEE
Q 016787 47 KCELEDPLILVHEKKISNLTAVVRVLELALKRQR-PLLIVAEDVESEALATLILNKLRAGIKVCAI 111 (382)
Q Consensus 47 ~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~-~lvI~~~~i~~~al~~L~~n~~~~~~~i~av 111 (382)
+..+++-.|+++|--+.+-..+...++.+++.|+ ++.++.--..+..++.+....-.-.+.+.+|
T Consensus 117 p~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~ll~~~~gl~~l~~~~p~v~i~~~~i 182 (207)
T TIGR01091 117 PEDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIVAAPEGIEAVEKAHPDVDIYTAAI 182 (207)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEEecCHHHHHHHHHHCCCCEEEEEEE
Confidence 3345666799999999999999999999999984 4545555667888888865543223334444
No 97
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=28.71 E-value=59 Score=30.68 Aligned_cols=41 Identities=5% Similarity=0.239 Sum_probs=26.7
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|... .+.+.+++..+.+.+.-+|++..+.+
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 357888888887443 34566667666655666777777643
No 98
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.53 E-value=55 Score=29.35 Aligned_cols=40 Identities=13% Similarity=0.360 Sum_probs=23.3
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|+++++|.|-.. .+.+.++++.+.+.+..++++..+.
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 188 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 356777777777432 3345556665554455566666654
No 99
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=28.47 E-value=62 Score=29.74 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=19.4
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|+++++|.|-.. .+++...++.+.+.+..+|++..+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 196 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN 196 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence 45666666666332 233445555554445555555554
No 100
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.40 E-value=61 Score=29.70 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=22.7
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHH-cCCCEEEEecCCc
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALK-RQRPLLIVAEDVE 90 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~-~~~~lvI~~~~i~ 90 (382)
.+|+++++|.|-.. .+++..++..+.+ .+..+|++..+.+
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 46667777776432 3345555555554 2556666666643
No 101
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=28.38 E-value=2.3e+02 Score=21.97 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCe
Q 016787 71 VLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 134 (382)
Q Consensus 71 ~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ 134 (382)
.++.+.+..+.+||++.+.++....-|..---...+++ +. ....++|..++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv--~~--------~~t~~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI--VY--------IDTMKELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE--EE--------eCCHHHHHHHHCCc
Confidence 35666666689999999999988776643111111223 21 23457889998875
No 102
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=28.35 E-value=67 Score=29.13 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=19.5
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|+++++|.|.. +.+.+.+++..+.+.+..+|++..+
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 166 ADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4556666666533 2233455555554445555555555
No 103
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=28.18 E-value=35 Score=35.29 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhcc
Q 016787 228 KDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLST 266 (382)
Q Consensus 228 ~r~l~dal~~~~~a~~~gvvpGGGa~e~~ls~~L~~~~~ 266 (382)
+|.+.+|+.++|++.+-=+|.|||+-+-.+...|..|+.
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E 254 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHH
Confidence 566888999999875533999999988888888887764
No 104
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.95 E-value=58 Score=28.50 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=28.3
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
+.+|+++++|.|... .+.+.+++..+.+. +..++++..+.
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 478899999988543 34567777777665 56777777764
No 105
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=27.92 E-value=62 Score=28.84 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=21.8
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|-. +.+.+.++++.+.+.+..+|++..+.
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 5666777776633 22345555555544455666666654
No 106
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.47 E-value=60 Score=29.26 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=22.7
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|-.. .+.+.+++..+.+. +..+|++..+.+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 356667777776432 23455555555443 555666666643
No 107
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=27.31 E-value=69 Score=28.92 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=21.3
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|... .+++.+.+..+.+.+.-+|++..+.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46666666666332 2345555555554455555666553
No 108
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=27.21 E-value=82 Score=32.52 Aligned_cols=42 Identities=14% Similarity=0.351 Sum_probs=30.4
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCcH
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVES 91 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i~~ 91 (382)
..+|+|+++|.|-. +.+++.++++.+.+.+..+|++..+.+.
T Consensus 407 ~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~ 453 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE 453 (491)
T ss_pred hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 35788888888843 4556777777777777778888887644
No 109
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=27.14 E-value=64 Score=29.70 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=21.8
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|... .+.+..+++.+.+.+.-+|++..+.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46667777766432 2345555555554555566666654
No 110
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.12 E-value=1.8e+02 Score=25.22 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=26.4
Q ss_pred HHHHHHcCCCEEEEecCCcHH-HHHHHHHccccCCceEEEEe
Q 016787 72 LELALKRQRPLLIVAEDVESE-ALATLILNKLRAGIKVCAIK 112 (382)
Q Consensus 72 le~i~~~~~~lvI~~~~i~~~-al~~L~~n~~~~~~~i~av~ 112 (382)
+|.+...+++|||......+. ....|...++ +++.+.
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gI----pvv~i~ 99 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGI----PVLYVN 99 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCC----CEEEeC
Confidence 588889999999886665553 7777766664 355564
No 111
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=26.94 E-value=63 Score=29.13 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=24.7
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
+.+|.++++|.|-.. .+.+.+++..+.+.+.-+|++..+.
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 196 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM 196 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357777777777442 3345566666655566666666664
No 112
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.91 E-value=66 Score=28.01 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=28.4
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
..+|+++++|.|-. +.+.+.+.++.+.+.+.-+|++..+.
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 46899999999844 33457777777766666677777764
No 113
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.79 E-value=68 Score=28.49 Aligned_cols=42 Identities=2% Similarity=0.298 Sum_probs=30.7
Q ss_pred ecC--ceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCcH
Q 016787 50 LED--PLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 91 (382)
Q Consensus 50 l~~--p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~~ 91 (382)
+.+ |+++++|.|... .+.+.+.+..+.+.+.-+|++..+.+.
T Consensus 103 ~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 103 FSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred hhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 468 999999998553 345667777766667888888888653
No 114
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=26.66 E-value=62 Score=29.61 Aligned_cols=39 Identities=15% Similarity=0.359 Sum_probs=18.3
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
.+|+|+++|.|-.. .+.+.+++..+.+. +.-+|++..+.
T Consensus 142 ~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 186 (230)
T TIGR02770 142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186 (230)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45556666665332 22344444444432 44455555543
No 115
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=26.59 E-value=65 Score=29.83 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=21.3
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+|+++|.|... ...+.+++..+.+.+.-+|++..+.
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~ 211 (252)
T CHL00131 168 LDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ 211 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 46666666666432 2345555555554455556666553
No 116
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=26.47 E-value=1.4e+02 Score=27.18 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=49.5
Q ss_pred ceeecCceEEEeccCCCCHHHHHHHHHHHHHcCC---CEEEEecCCcHHHHHHHHHccccCCceEEEEe
Q 016787 47 KCELEDPLILVHEKKISNLTAVVRVLELALKRQR---PLLIVAEDVESEALATLILNKLRAGIKVCAIK 112 (382)
Q Consensus 47 ~~~l~~p~Ill~d~~I~~~~~l~~~le~i~~~~~---~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~ 112 (382)
|..+++..|+++|--+.+-..+...++.+++.|+ ++++++=-.+++.++.+..+.-.-.+.+.+|.
T Consensus 116 P~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~Gl~~l~~~~P~v~I~ta~iD 184 (207)
T PF14681_consen 116 PEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASPEGLERLLKAFPDVRIYTAAID 184 (207)
T ss_dssp -TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHHHHHHHHHHSTTSEEEEEEEE
T ss_pred CCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecHHHHHHHHHhCCCeEEEEEEEc
Confidence 4445677899999999999999999999999874 66777777788899988766543344455554
No 117
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=26.45 E-value=72 Score=29.72 Aligned_cols=41 Identities=7% Similarity=0.179 Sum_probs=24.9
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|.. +.+.+..++..+.+.+..+|++..+.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 35677777777744 234456666666555666667766643
No 118
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.35 E-value=69 Score=29.31 Aligned_cols=40 Identities=10% Similarity=0.326 Sum_probs=21.2
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCCc
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDVE 90 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i~ 90 (382)
.+|+|+++|.|-.. .+.+.+++..+.+. +..+|++..+.+
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 46666666666332 23345555554432 555666666543
No 119
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.22 E-value=72 Score=28.62 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=23.3
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHH-cCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALK-RQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~-~~~~lvI~~~~i 89 (382)
+.+|+++++|.|... .+.+.+++..+.+ .+.-+|++..+.
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 357777777777442 3345566655543 355666666654
No 120
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=26.16 E-value=67 Score=28.75 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=28.9
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|.++++|.|... .+++.+++..+.+.+.-+|++..+.+
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 468899999998543 34566777776655677777777754
No 121
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=26.14 E-value=63 Score=30.66 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=24.1
Q ss_pred EEEecCCchhHHHHHHHHHHHHHHHHH
Q 016787 213 VLKIGGASEAEVGEKKDRVTDALNATK 239 (382)
Q Consensus 213 TI~lrG~t~~~l~E~~r~l~dal~~~~ 239 (382)
||+|+| ++..+++.+|.++|-+++.+
T Consensus 122 TIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 122 TIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred eEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 999999 77899999999999999986
No 122
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=26.06 E-value=1e+02 Score=32.13 Aligned_cols=44 Identities=5% Similarity=0.197 Sum_probs=34.7
Q ss_pred eecCceEEEeccC--CCCHHH---HHHHHHHHHHcCCCEEEEecCCcHH
Q 016787 49 ELEDPLILVHEKK--ISNLTA---VVRVLELALKRQRPLLIVAEDVESE 92 (382)
Q Consensus 49 ~l~~p~Ill~d~~--I~~~~~---l~~~le~i~~~~~~lvI~~~~i~~~ 92 (382)
-+.+|++|++|.| +=++++ +..++..+++.|..+|++...+.+.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev 203 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV 203 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 3589999999998 445554 6667788889999999999987543
No 123
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=26.02 E-value=73 Score=30.14 Aligned_cols=39 Identities=10% Similarity=0.285 Sum_probs=30.7
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHH-cCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALK-RQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~-~~~~lvI~~~~i 89 (382)
.+|++|++|.|.- ..+++..++..+.+ .|..++++..++
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM 210 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM 210 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 6899999999943 34567778888887 458999999986
No 124
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.88 E-value=66 Score=30.31 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=18.7
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|... ...+.+++..+.+.+.-+|++..+.
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 196 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45556666655332 2234445554444444455555543
No 125
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=25.72 E-value=74 Score=28.81 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=18.3
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
.+|.++++|.|-.. .+.+.+.+..+.+. +.-+|++..+.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45555665555332 22344444444433 44555555553
No 126
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=25.54 E-value=78 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=22.6
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|-.. .+.+..++..+.+. +.-+|++..+.+
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 356677777776432 23455555555433 555666666543
No 127
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=25.37 E-value=74 Score=29.11 Aligned_cols=39 Identities=15% Similarity=0.402 Sum_probs=20.6
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHH-cCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALK-RQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~-~~~~lvI~~~~i 89 (382)
.+|+|+++|.|... .+++.+++..+.+ .|.-+|++..+.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46666666666332 2344555555543 345556666654
No 128
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.16 E-value=79 Score=28.18 Aligned_cols=39 Identities=5% Similarity=0.227 Sum_probs=21.1
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
+.+|+++++|.|... .+.+.+++..+++.+.-+|++..+
T Consensus 143 ~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 186 (200)
T PRK13540 143 MSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186 (200)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 356667777776432 233455555554445555555554
No 129
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.99 E-value=74 Score=28.56 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=22.9
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHH-cCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALK-RQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~-~~~~lvI~~~~i 89 (382)
+.+|+++++|.|-. +...+.+++..+.+ .+.-+|++..+.
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 35677777777743 23345555555544 355666666664
No 130
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=24.89 E-value=80 Score=29.38 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=19.4
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|.++++|.|-.. .+.+..++..+.+.+.-+|++..+.
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45666666665332 2334444544444445555555553
No 131
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=24.88 E-value=86 Score=27.81 Aligned_cols=38 Identities=5% Similarity=0.025 Sum_probs=16.8
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|+++++|.|... .+++..++....+.+.-+|++..+
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 182 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL 182 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45555555555332 223334443333334444555444
No 132
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=24.82 E-value=2.2e+02 Score=26.87 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccC-CCC
Q 016787 64 NLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE-LGM 142 (382)
Q Consensus 64 ~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~-~~~ 142 (382)
+++-+.+...++.+.|++++|.+-+ .|.+-++ .+-++.+++.+|+++.-.- .=-
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVG-------ALad~~l------------------~erl~~lak~~~~rv~~pSGAiG 123 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVG-------ALADEGL------------------RERLRELAKCGGARVYLPSGAIG 123 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEech-------hccChHH------------------HHHHHHHHhcCCcEEEecCccch
Confidence 3444556666777777777766554 1211111 2345677888888866441 001
Q ss_pred ccccCCcCCCceeeEEEEe-------------cceEEEEcCC
Q 016787 143 DLEKVNLDMLGTCKKVTIS-------------KDDTVILDGA 171 (382)
Q Consensus 143 ~l~~l~~~~lG~~~~v~i~-------------~~~~~~~~~~ 171 (382)
-+|-++.-.+|..+.|..+ ++++++|+|.
T Consensus 124 GlD~l~aar~g~i~~V~lttrKpp~~lg~dl~~~ktVlfeG~ 165 (255)
T COG1712 124 GLDALAAARVGGIEEVVLTTRKPPAELGIDLEDKKTVLFEGS 165 (255)
T ss_pred hHHHHHHhhcCCeeEEEEEeecChHHhCcCcccCceEEEecc
Confidence 2455666667777777753 2577888873
No 133
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=24.78 E-value=95 Score=27.72 Aligned_cols=11 Identities=0% Similarity=0.114 Sum_probs=5.4
Q ss_pred cCceEEEeccC
Q 016787 51 EDPLILVHEKK 61 (382)
Q Consensus 51 ~~p~Ill~d~~ 61 (382)
.+|+++++|.|
T Consensus 142 ~~p~llllDEP 152 (201)
T cd03231 142 SGRPLWILDEP 152 (201)
T ss_pred cCCCEEEEeCC
Confidence 34455555554
No 134
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=24.37 E-value=87 Score=27.81 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=18.5
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|+++++|.|... .+.+.+++....+.+.-+|++..+
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 144 SRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 45666666665332 233444444444444445555443
No 135
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=24.34 E-value=69 Score=32.53 Aligned_cols=42 Identities=5% Similarity=0.166 Sum_probs=31.0
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCcH
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVES 91 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~~ 91 (382)
+.+|+|+++|.|... ..+++.++..+.+.+.-+|++..+++.
T Consensus 155 ~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~ 201 (402)
T PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL 201 (402)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 468999999998553 346778888777667777788877544
No 136
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=24.23 E-value=80 Score=28.41 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=22.4
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
+.+|+++++|.|-. +..++.++++.+.+. +.-+|++..+.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 35666777777633 233455556655543 55666666654
No 137
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.08 E-value=76 Score=30.05 Aligned_cols=39 Identities=15% Similarity=0.422 Sum_probs=22.6
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|-. +..++.+++..+.+.+.-+|++..+.
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~ 198 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV 198 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5666777777633 23345566665554455666666664
No 138
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.08 E-value=82 Score=29.99 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=18.4
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
.+|+++++|.|.. +.+++..++..+.+. |.-+|++..+.
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4555666555533 122344444444432 44555555543
No 139
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=24.05 E-value=82 Score=32.65 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=25.6
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
..+|+++++|.|-+ +.+++..+++.+.+.|..+|++..+.
T Consensus 412 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 456 (501)
T PRK11288 412 SEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456 (501)
T ss_pred ccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 35677777777743 33456666666666666677777764
No 140
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=23.99 E-value=25 Score=36.90 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=48.1
Q ss_pred CCCEEEEecCCcH-----HHHHHHHHccccCC----ceEEEEecCCCCcchhhhHHHHHHHHCCeEeccC
Q 016787 79 QRPLLIVAEDVES-----EALATLILNKLRAG----IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEE 139 (382)
Q Consensus 79 ~~~lvI~~~~i~~-----~al~~L~~n~~~~~----~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~ 139 (382)
..++.|..+++++ +++..+..++++++ .++++++.| +++...+.|++..++++.++...+
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~d 315 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDED 315 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHH
Confidence 3577788888888 78777777777663 378899888 999999999999999998877654
No 141
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=23.86 E-value=1.2e+02 Score=28.12 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=32.4
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.||+.+++|.|.. .+.+++.++..++..|.-++|....+
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH
Confidence 5899999999854 46788899999999999998887664
No 142
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.75 E-value=2.2e+02 Score=28.14 Aligned_cols=73 Identities=15% Similarity=0.046 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEeccCCCCcc
Q 016787 65 LTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDL 144 (382)
Q Consensus 65 ~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~l 144 (382)
.+++..+.++..+.| +.+++..+|..++.+|...+ +-++|.+++.-..-..|+.+|. ||-.++-+..-.++
T Consensus 75 ~e~~~~L~~~~~~~G--i~~~stpfd~~svd~l~~~~------v~~~KIaS~~~~n~pLL~~~A~-~gkPvilStGmatl 145 (329)
T TIGR03569 75 EEDHRELKEYCESKG--IEFLSTPFDLESADFLEDLG------VPRFKIPSGEITNAPLLKKIAR-FGKPVILSTGMATL 145 (329)
T ss_pred HHHHHHHHHHHHHhC--CcEEEEeCCHHHHHHHHhcC------CCEEEECcccccCHHHHHHHHh-cCCcEEEECCCCCH
Confidence 344556666666655 55688889999999997665 5677877764444556666666 78887777433344
Q ss_pred cc
Q 016787 145 EK 146 (382)
Q Consensus 145 ~~ 146 (382)
++
T Consensus 146 ~E 147 (329)
T TIGR03569 146 EE 147 (329)
T ss_pred HH
Confidence 43
No 143
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=23.72 E-value=1.4e+02 Score=25.89 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=29.8
Q ss_pred ChhhHHHHHHHHHHhhhhHHHHHHHcCCCHHHHHHHHHhc
Q 016787 268 NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQ 307 (382)
Q Consensus 268 ~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~vi~~l~~~ 307 (382)
+|+...+.+++..||+.|-+ =.|.||.+++.+-...
T Consensus 32 ~GKK~~A~~Ivy~Af~ii~~----kTg~~Piqvf~~Ai~N 67 (148)
T COG0049 32 DGKKSLAEKIVYGAFDIIEK----KTGQNPLQVFEKAIEN 67 (148)
T ss_pred hccHHHHHHHHHHHHHHHHH----HHCCChHHHHHHHHHh
Confidence 78999999999999997644 4599999999886553
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=23.65 E-value=82 Score=29.54 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=22.3
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
+.+|+++++|.|-.. ..++.+++..+.+. +..+|++..+.
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 356677777776432 23455555555443 55566666653
No 145
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=23.64 E-value=83 Score=32.66 Aligned_cols=41 Identities=10% Similarity=0.350 Sum_probs=26.7
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|-. +.+++.+++..+.+.|.-+|++..+++
T Consensus 421 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~ 466 (506)
T PRK13549 421 LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP 466 (506)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 35777888888744 334566667666666666777777653
No 146
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.63 E-value=78 Score=29.07 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=19.2
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
.+|.++++|.|... .+.+..++..+.+. +..+|++..+.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45566666665332 22344445444432 45555555553
No 147
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=23.61 E-value=88 Score=28.58 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=17.0
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHc-CCCEEEEecC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKR-QRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~-~~~lvI~~~~ 88 (382)
.+|+++++|.|.. +.+.+.+++..+.+. +.-+|++..+
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4555555555532 122344444444332 4444555444
No 148
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=23.45 E-value=79 Score=28.35 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=22.7
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHH-cCCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALK-RQRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~-~~~~lvI~~~~i 89 (382)
+.+|+++++|.|... ..++.+++..+.+ .+.-+|++..+.
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356777777776442 2345555555544 355666666664
No 149
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=23.38 E-value=80 Score=28.83 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=19.7
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|+++++|.|-.. .+.+.+.++.+.+.+..+|++..+
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46666666666332 233455555544444455555555
No 150
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=23.38 E-value=73 Score=30.64 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=26.4
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|-.. ...+.+++..+.+.|..+|++..+.+
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME 185 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 467778888887442 33456666666655666777777643
No 151
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.37 E-value=86 Score=29.95 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=5.2
Q ss_pred cCCCEEEEec
Q 016787 78 RQRPLLIVAE 87 (382)
Q Consensus 78 ~~~~lvI~~~ 87 (382)
.+++++|..+
T Consensus 161 ~~p~illLDE 170 (288)
T PRK13643 161 MEPEVLVLDE 170 (288)
T ss_pred hCCCEEEEEC
Confidence 3455555544
No 152
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=23.37 E-value=82 Score=28.87 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=22.2
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
.+|+++++|.|... .+++.+++..+.+. +..++++..+.
T Consensus 131 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 175 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175 (230)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56777777776442 33455555555443 55666666664
No 153
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=23.36 E-value=2.8e+02 Score=21.26 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCEEEEecCCcHHHHHHHH----HccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeE
Q 016787 71 VLELALKRQRPLLIVAEDVESEALATLI----LNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDL 135 (382)
Q Consensus 71 ~le~i~~~~~~lvI~~~~i~~~al~~L~----~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~i 135 (382)
.++.+.+....+||++.+.++.....+. .++ +++.-+ ...++|..++|-.+
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~----Vp~~~~----------~s~~eLG~a~G~~~ 73 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPRLTEKVEALANEKG----VPVSKV----------DSMKKLGKACGIEV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcC----CCEEEE----------CCHHHHHHHHCCCc
Confidence 3455665568999999999998765552 222 223222 13478888888653
No 154
>PRK11058 GTPase HflX; Provisional
Probab=23.16 E-value=3.5e+02 Score=27.61 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=30.3
Q ss_pred cCChHHHHHHHH---HHhhhcCCeEEEEecCCchhHHHHHHHHHHHHHHHHHH
Q 016787 191 STSDYDKEKLQE---RLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKA 240 (382)
Q Consensus 191 ~~s~~~~~~l~~---rl~~l~g~~~TI~lrG~t~~~l~E~~r~l~dal~~~~~ 240 (382)
++-+|+.++|.. .+.|..|++.+ |||-+..++.-.+.+.+=+..++.
T Consensus 127 A~l~y~~prl~~~~~~l~~~~gg~g~---~g~ge~~~e~d~r~i~~ri~~l~~ 176 (426)
T PRK11058 127 AQLRHLATRLVRGWTHLERQKGGIGL---RGPGETQLETDRRLLRNRIVQILS 176 (426)
T ss_pred HhhhhhhhhhhccccchhhhcCCCCC---CCCChhHhHHHHHHHHHHHHHHHH
Confidence 455677777753 66666666553 899988887666655555554443
No 155
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.97 E-value=80 Score=30.12 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=16.0
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|+++++|.|... .+.+.+++..+.+.+.-+|++..+
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~ 204 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 34455555554321 223344444443334444444444
No 156
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=22.61 E-value=88 Score=28.24 Aligned_cols=40 Identities=15% Similarity=0.364 Sum_probs=20.1
Q ss_pred cCceEEEeccCCCC-----HHHHHH--HHHHHHHcCCCEEEEecCCc
Q 016787 51 EDPLILVHEKKISN-----LTAVVR--VLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~--~le~i~~~~~~lvI~~~~i~ 90 (382)
.+|+++++|.|... .+++.+ +++.+.+.+.-++++..+.+
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 45666666666332 223333 44444444555556665543
No 157
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.60 E-value=92 Score=28.40 Aligned_cols=40 Identities=10% Similarity=0.319 Sum_probs=22.8
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
+.+|+++++|.|... .+.+.+++..+.+. +.-+|++..+.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356677777776442 23455555555443 56666666654
No 158
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=22.56 E-value=78 Score=30.64 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=26.1
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|-. +..++..++..+.+.|.-++++....+
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 46778888888744 234566666666655666666666654
No 159
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=22.45 E-value=82 Score=29.17 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=5.6
Q ss_pred cCceEEEeccC
Q 016787 51 EDPLILVHEKK 61 (382)
Q Consensus 51 ~~p~Ill~d~~ 61 (382)
.+|+++++|.|
T Consensus 165 ~~p~vlllDEP 175 (253)
T TIGR02323 165 TRPRLVFMDEP 175 (253)
T ss_pred cCCCEEEEcCC
Confidence 34555555555
No 160
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=22.27 E-value=80 Score=30.37 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=26.1
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|... .+++..++..+.+.|.-+|++..+.+
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 367778888887442 34456666666555666777777653
No 161
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=22.17 E-value=88 Score=29.34 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=4.7
Q ss_pred CceEEEeccC
Q 016787 52 DPLILVHEKK 61 (382)
Q Consensus 52 ~p~Ill~d~~ 61 (382)
+|+++++|.|
T Consensus 168 ~p~illLDEP 177 (265)
T TIGR02769 168 KPKLIVLDEA 177 (265)
T ss_pred CCCEEEEeCC
Confidence 4444444444
No 162
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=22.09 E-value=1e+02 Score=32.14 Aligned_cols=41 Identities=12% Similarity=0.307 Sum_probs=24.4
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|++|++|.|-. +.+++..++..+.+.+.-+|++..+.+
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 35677777777633 334455666665555656666666643
No 163
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.07 E-value=3.4e+02 Score=24.22 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=39.1
Q ss_pred HHHHHHcCCCEEEEecCC-cHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCe
Q 016787 72 LELALKRQRPLLIVAEDV-ESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 134 (382)
Q Consensus 72 le~i~~~~~~lvI~~~~i-~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ 134 (382)
+|.+...+++|||..... .......+...++ +++.+......+--.+.++.|+.++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~i----p~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGI----PVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTS----EEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccc----eEEEeecccchHHHHHHHHHHHHhcccH
Confidence 488888999999988877 5555555555554 5777765543123367888888888875
No 164
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=22.03 E-value=1e+02 Score=27.82 Aligned_cols=41 Identities=15% Similarity=0.367 Sum_probs=26.1
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|... .+.+.+++..+.+. +.-+|++..+.+
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 467788888887443 34456666665543 566777777754
No 165
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.75 E-value=76 Score=28.96 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=19.2
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|... .+.+.+.+..+.+ +.-+|++..+.
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~ 196 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL 196 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 45666666666332 2334444544444 54555555554
No 166
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=21.74 E-value=1.1e+02 Score=27.91 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=22.7
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHH-cCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALK-RQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~-~~~~lvI~~~~i~ 90 (382)
+.+|.++++|.|... .+.+..++..+.+ .+..+|++..+.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 356667777776332 3345555555543 3556666666643
No 167
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=21.62 E-value=95 Score=29.00 Aligned_cols=11 Identities=0% Similarity=0.335 Sum_probs=5.4
Q ss_pred cCceEEEeccC
Q 016787 51 EDPLILVHEKK 61 (382)
Q Consensus 51 ~~p~Ill~d~~ 61 (382)
.+|+++++|.|
T Consensus 169 ~~p~llllDEP 179 (262)
T PRK09984 169 QQAKVILADEP 179 (262)
T ss_pred cCCCEEEecCc
Confidence 34445555554
No 168
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.45 E-value=99 Score=28.50 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=16.6
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHH-cCCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALK-RQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~-~~~~lvI~~~~ 88 (382)
.+|+++++|.|... .+.+...+..+.+ .+..+|++..+
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 148 NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 45555555555322 2233344444433 24444455444
No 169
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.43 E-value=85 Score=29.68 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=5.0
Q ss_pred cCCCEEEEec
Q 016787 78 RQRPLLIVAE 87 (382)
Q Consensus 78 ~~~~lvI~~~ 87 (382)
..++++|..+
T Consensus 162 ~~p~lllLDE 171 (280)
T PRK13649 162 MEPKILVLDE 171 (280)
T ss_pred cCCCEEEEeC
Confidence 3455555544
No 170
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=21.39 E-value=1.1e+02 Score=27.90 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=18.0
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~ 88 (382)
.+|+++++|.|... .+++.+++..+.+. +..+|++..+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 191 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 45556665555332 23344444444432 4445555555
No 171
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=21.34 E-value=84 Score=31.01 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=27.4
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|... ..++.+++..+.+.|.-+|++....+
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 467888888888543 34566677666666666777776654
No 172
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=21.30 E-value=99 Score=32.08 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=25.8
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|-+. .+.+.++++.+.+.|.-+|++..+.
T Consensus 426 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred cCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 57788888887443 3456666666665566677777764
No 173
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=21.20 E-value=94 Score=29.27 Aligned_cols=10 Identities=10% Similarity=0.557 Sum_probs=4.5
Q ss_pred CceEEEeccC
Q 016787 52 DPLILVHEKK 61 (382)
Q Consensus 52 ~p~Ill~d~~ 61 (382)
+|+++++|.|
T Consensus 161 ~p~lllLDEP 170 (269)
T PRK11831 161 EPDLIMFDEP 170 (269)
T ss_pred CCCEEEEcCC
Confidence 4444444444
No 174
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=21.19 E-value=1e+02 Score=28.58 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=16.7
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
.+|+++++|.|-.. ...+.+++..+.+. +.-+|++..+.
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 34555555555321 22334444444332 44444554443
No 175
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=21.18 E-value=3.9e+02 Score=22.61 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=34.0
Q ss_pred EEEecceEEEEcC------CCChhhHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcC
Q 016787 158 VTISKDDTVILDG------AGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSG 209 (382)
Q Consensus 158 v~i~~~~~~~~~~------~~~~~~i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g 209 (382)
+++.+++.+++.. .-|.+..+...+..++.+..+.+++.++.++.|+.+++.
T Consensus 69 ~eV~~n~v~Ila~~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~ 126 (133)
T PRK14736 69 AEIGPTSVTVLAERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQE 126 (133)
T ss_pred EEEECCEEEEEeeeeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Confidence 3445555554442 225666777777777777777778888888888777653
No 176
>PLN02775 Probable dihydrodipicolinate reductase
Probab=21.17 E-value=3.7e+02 Score=26.00 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=49.2
Q ss_pred CceEEEeccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHH
Q 016787 52 DPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVL 130 (382)
Q Consensus 52 ~p~Ill~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~ 130 (382)
.|-..++|+ +.++-..+.++.+.+.|+++|+-..+++++-+..+...+ .+-+|-+|-|+ +.-..|.+++..
T Consensus 79 ~~~~VvIDF--T~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~-----~i~vv~apNfS-iGv~ll~~l~~~ 149 (286)
T PLN02775 79 YPNLIVVDY--TLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEES-----GVYAVIAPQMG-KQVVAFQAAMEI 149 (286)
T ss_pred CCCEEEEEC--CChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcC-----CccEEEECccc-HHHHHHHHHHHH
Confidence 466567777 466778888899999999999999999999887776542 14556666552 233455555543
No 177
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.17 E-value=89 Score=29.61 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=24.7
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHc-CCCEEEEecCCcH
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKR-QRPLLIVAEDVES 91 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~-~~~lvI~~~~i~~ 91 (382)
.+|+++++|.|-. +..++.+++..+.+. +.-+|++..+.+.
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5677777777643 233456666666543 5666677666544
No 178
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.15 E-value=1e+02 Score=29.24 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=16.3
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHc-CCCEEEEecC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKR-QRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~-~~~lvI~~~~ 88 (382)
.+|+++++|.|.. +.+++.+++..+.+. +.-+|++..+
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 197 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4455555555432 122344444444332 4444444444
No 179
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.03 E-value=1.1e+02 Score=28.80 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=19.7
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|-. +..++...+..+.+.+.-+|++..+.
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~ 197 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV 197 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 4566666666532 22334455555444455555555553
No 180
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.02 E-value=93 Score=29.43 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=17.5
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|.++++|.|... ..++.+++..+.+.|.-+|++..+.
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~ 196 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL 196 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 45555555555322 2234444444443344444554444
No 181
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.01 E-value=3.7e+02 Score=22.48 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCCEEEEecCCcHHHHHHHHHccc
Q 016787 70 RVLELALKRQRPLLIVAEDVESEALATLILNKL 102 (382)
Q Consensus 70 ~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~ 102 (382)
.+.+.+++.|+++||+. .+.+.+++.|...++
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GI 87 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGI 87 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCc
Confidence 35788889999996654 578999999988885
No 182
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=20.99 E-value=97 Score=28.48 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=23.0
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
.+|+++++|.|... .+.+..+++.+.+. +..+|++....
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46777777777442 33455666655543 55666666653
No 183
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.98 E-value=1e+02 Score=27.84 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=21.7
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHH-cCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALK-RQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~-~~~~lvI~~~~i 89 (382)
.+|.++++|.|... .+++.+++..+.+ .+..+|++..+.
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 192 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI 192 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 46677777776442 2345555555543 355566666654
No 184
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=20.97 E-value=97 Score=28.68 Aligned_cols=39 Identities=13% Similarity=0.277 Sum_probs=20.6
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
.+|.++++|.|... ...+.+++..+.+. +.-+|++..+.
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 170 TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 46666666666432 23345555555443 45555555553
No 185
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=20.89 E-value=97 Score=28.96 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=22.2
Q ss_pred ecCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCC
Q 016787 50 LEDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDV 89 (382)
Q Consensus 50 l~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i 89 (382)
+.+|+++++|.|... .+.+..++..+.+. +..+|++..+.
T Consensus 136 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181 (251)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 356677777776432 23455555555443 55666666664
No 186
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=20.83 E-value=1.1e+02 Score=28.05 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=4.5
Q ss_pred CceEEEeccC
Q 016787 52 DPLILVHEKK 61 (382)
Q Consensus 52 ~p~Ill~d~~ 61 (382)
+|+++++|.|
T Consensus 150 ~p~llllDEP 159 (236)
T TIGR03864 150 RPALLLLDEP 159 (236)
T ss_pred CCCEEEEcCC
Confidence 4444444444
No 187
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.73 E-value=1e+02 Score=28.35 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=17.5
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~ 88 (382)
.+|.++++|.|-.. .+.+...+..+.+. +.-+|++..+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 45555555555331 22344444444432 4445555554
No 188
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=20.67 E-value=2.1e+02 Score=26.74 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=34.5
Q ss_pred HHHHHHcCCCEEEEecC-CcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCC
Q 016787 72 LELALKRQRPLLIVAED-VESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGG 133 (382)
Q Consensus 72 le~i~~~~~~lvI~~~~-i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~ 133 (382)
+|.+...+++|||...+ .....+..|...++ ++..+....+.++ .+.++.+++++|-
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi----~v~~~~~~~~~~~-~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGI----KVMWVDATSIEQI-ANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCC----CEEEeCCCCHHHH-HHHHHHHHHHcCC
Confidence 68889999999987643 34556677765554 4666643222222 3455666666654
No 189
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=20.64 E-value=92 Score=29.30 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=4.2
Q ss_pred CCCEEEEec
Q 016787 79 QRPLLIVAE 87 (382)
Q Consensus 79 ~~~lvI~~~ 87 (382)
+++++|..+
T Consensus 167 ~p~lllLDE 175 (267)
T PRK15112 167 RPKVIIADE 175 (267)
T ss_pred CCCEEEEcC
Confidence 445554444
No 190
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=20.63 E-value=1e+02 Score=27.99 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=22.5
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHc-CCCEEEEecCCc
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKR-QRPLLIVAEDVE 90 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~-~~~lvI~~~~i~ 90 (382)
.+|+++++|.|-.. .+.+.+++..+.+. +.-++++..+.+
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 56677777776432 33455555555433 556666666643
No 191
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=20.58 E-value=98 Score=29.98 Aligned_cols=38 Identities=16% Similarity=0.427 Sum_probs=16.4
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAED 88 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~ 88 (382)
.+|.++++|.|... .+.+.+++..+.+.|.-+|++..+
T Consensus 182 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 34445555554321 223444444444334444444444
No 192
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=20.48 E-value=1.4e+02 Score=27.94 Aligned_cols=73 Identities=14% Similarity=0.267 Sum_probs=46.4
Q ss_pred eccCCCCHHHHHHHHHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCeEec
Q 016787 58 HEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLIT 137 (382)
Q Consensus 58 ~d~~I~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ii~ 137 (382)
...+..+.+++.+.+..+.+.+..+++++.+-+...+.+- ++....+. .++.||..++
T Consensus 89 ~~~~~~s~~ei~~~l~~~~~~~~~v~~vNS~~~~~~ldy~--~~~~~~~~--------------------~I~VGGn~Ls 146 (239)
T PF10593_consen 89 TDPDPPSWEEIKPELPKAISDGIEVVVVNSGSSDDSLDYD--DGENLGLN--------------------VIAVGGNKLS 146 (239)
T ss_pred ccCCCcCHHHHHHHHHHHHhcCceEEEEeCCCcccccccc--ccccCCce--------------------EEEECCcccc
Confidence 3445678888988888877667888888765444443333 22110011 2446888888
Q ss_pred cCCCCccccCCcCCCce
Q 016787 138 EELGMDLEKVNLDMLGT 154 (382)
Q Consensus 138 ~~~~~~l~~l~~~~lG~ 154 (382)
+ |+|++.|...++.+
T Consensus 147 R--GlTleGL~vsYf~R 161 (239)
T PF10593_consen 147 R--GLTLEGLTVSYFLR 161 (239)
T ss_pred C--ceeECCcEEEEecC
Confidence 8 88888887776655
No 193
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=20.37 E-value=82 Score=31.36 Aligned_cols=38 Identities=26% Similarity=0.268 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC--ccccchHHHHHHH
Q 016787 221 EAEVGEKKDRVTDALNATKAAVEEG--IVPGGGVALLYAA 258 (382)
Q Consensus 221 ~~~l~E~~r~l~dal~~~~~a~~~g--vvpGGGa~e~~ls 258 (382)
.++-.|.++.++.--.++-||..+| +|.|.|++.+--|
T Consensus 42 ~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~A 81 (363)
T PF04864_consen 42 WFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNA 81 (363)
T ss_dssp TTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHH
Confidence 5667788888888888899999988 9999999866543
No 194
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=20.35 E-value=1.2e+02 Score=28.44 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=26.3
Q ss_pred CceEEEeccCCCC-----HHHHHHHHHHHH-HcCCCEEEEecCCc
Q 016787 52 DPLILVHEKKISN-----LTAVVRVLELAL-KRQRPLLIVAEDVE 90 (382)
Q Consensus 52 ~p~Ill~d~~I~~-----~~~l~~~le~i~-~~~~~lvI~~~~i~ 90 (382)
+|.++++|.|... .+.+..++..+. +.+..+|++..+.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 202 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN 202 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 7888888888543 345666666665 55667777777743
No 195
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.32 E-value=1.5e+02 Score=28.78 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=31.5
Q ss_pred ecCceEEEeccC-----CCCHHHHHHHHHHHH-HcCCCEEEEecCCcHHH
Q 016787 50 LEDPLILVHEKK-----ISNLTAVVRVLELAL-KRQRPLLIVAEDVESEA 93 (382)
Q Consensus 50 l~~p~Ill~d~~-----I~~~~~l~~~le~i~-~~~~~lvI~~~~i~~~a 93 (382)
+++|+||++|.+ +.--..+.+|++..- +.++-+++....++|.+
T Consensus 172 Lh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~ 221 (325)
T COG4586 172 LHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIA 221 (325)
T ss_pred cCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHH
Confidence 589999999997 223345778877655 34578888888887763
No 196
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=20.31 E-value=94 Score=29.37 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=5.6
Q ss_pred cCCCEEEEec
Q 016787 78 RQRPLLIVAE 87 (382)
Q Consensus 78 ~~~~lvI~~~ 87 (382)
.+++++|..+
T Consensus 160 ~~p~iLlLDE 169 (264)
T PRK13546 160 VNPDILVIDE 169 (264)
T ss_pred hCCCEEEEeC
Confidence 4556666555
No 197
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.30 E-value=2.8e+02 Score=25.25 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHcCCCEEEEecCCcHHHHHHHHHccccCCceEEEEecCCCCcchhhhHHHHHHHHCCe
Q 016787 72 LELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGD 134 (382)
Q Consensus 72 le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~~~~~~~~le~la~~tG~~ 134 (382)
+|+|...+++|||......+ ..+.|...+ .++.+.. ...++ .+.++.++.++|-.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~-----p~~~~~~-~~~~~-~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIA-----PTVPVSY-NSSDW-EEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhC-----CEEEEcC-CCCCH-HHHHHHHHHHhCcH
Confidence 68899999999998776554 555554332 2444542 33444 56778888877753
No 198
>PRK03298 hypothetical protein; Provisional
Probab=20.29 E-value=2.4e+02 Score=26.23 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHc-C-CCE--EEEecCCcHHHHHHHHHcccc
Q 016787 62 ISNLTAVVRVLELALKR-Q-RPL--LIVAEDVESEALATLILNKLR 103 (382)
Q Consensus 62 I~~~~~l~~~le~i~~~-~-~~l--vI~~~~i~~~al~~L~~n~~~ 103 (382)
++-++||...++.+.+. + .++ |+++.+|++.|..++.+.+++
T Consensus 159 idaV~QL~RYve~l~rd~~~~~VRGIlvAp~It~~Ar~Ll~drGle 204 (224)
T PRK03298 159 IDGVEQLTRYLELLNRDPLLAPVRGVFAAQEIKPQARTLAEDRGIR 204 (224)
T ss_pred ccHHHHHHHHHHHHhhCcCcCCceEEEECCcCCHHHHHHHHHcCCe
Confidence 56688999999988765 4 566 899999999999999999874
No 199
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=20.29 E-value=1e+02 Score=28.84 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=23.5
Q ss_pred ecCceEEEeccCCC-----CHHHHHHHHHHHHHc-CCCEEEEecCCc
Q 016787 50 LEDPLILVHEKKIS-----NLTAVVRVLELALKR-QRPLLIVAEDVE 90 (382)
Q Consensus 50 l~~p~Ill~d~~I~-----~~~~l~~~le~i~~~-~~~lvI~~~~i~ 90 (382)
+.+|+++++|.|-. +.+.+..++..+.+. +.-+|++..+.+
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 35677777777633 233455666655543 555666666643
No 200
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.24 E-value=1.2e+02 Score=24.67 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCCeE
Q 016787 177 IEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVA 212 (382)
Q Consensus 177 i~~~~~~l~~~~~~~~s~~~~~~l~~rl~~l~g~~~ 212 (382)
.+.|+..++.++..-.+..+...|+-+++.++|.+.
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHH
Confidence 488999999999998899999999999998887643
No 201
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=20.12 E-value=1.1e+02 Score=31.68 Aligned_cols=39 Identities=8% Similarity=0.320 Sum_probs=22.5
Q ss_pred cCceEEEeccCCC-----CHHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKIS-----NLTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~-----~~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|-. +.+.+.+++..+.+.+.-+|++..+.
T Consensus 420 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 420 TNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 4666777777633 23345555666555555566666664
No 202
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=20.07 E-value=97 Score=29.13 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=25.0
Q ss_pred cCceEEEeccCCCC-----HHHHHHHHHHHHHcCCCEEEEecCC
Q 016787 51 EDPLILVHEKKISN-----LTAVVRVLELALKRQRPLLIVAEDV 89 (382)
Q Consensus 51 ~~p~Ill~d~~I~~-----~~~l~~~le~i~~~~~~lvI~~~~i 89 (382)
.+|+++++|.|... ...+..+++.+.+.+..++++..+.
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 57778888887543 2345566666665566677777764
No 203
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=20.03 E-value=99 Score=28.79 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=4.2
Q ss_pred CCCEEEEec
Q 016787 79 QRPLLIVAE 87 (382)
Q Consensus 79 ~~~lvI~~~ 87 (382)
+++++|..+
T Consensus 169 ~p~llllDE 177 (258)
T PRK11701 169 HPRLVFMDE 177 (258)
T ss_pred CCCEEEEcC
Confidence 445555444
Done!