BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016790
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 132/299 (44%), Gaps = 54/299 (18%)
Query: 56 SATYVGVYDGHGGPEASRFVNKHLFPYL------HKFAMEHGGLSAEVIKKAFHATEEEF 109
+A + GVYDGHGG + + + + + L K + G E KKA + F
Sbjct: 51 AAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNS---F 107
Query: 110 LRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERL 169
LR+ + V P+ +VGS +V + ++VAN GDSRAVL R + A L
Sbjct: 108 LRVDSEIESVAPE--TVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKT--------ALPL 157
Query: 170 STDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPV 229
S DH E+ +EA V+ G R+ G++ +SRSIGD YLK
Sbjct: 158 SVDHKPDREDEAARIEAA----GGKVIQWNGA-RVFGVLAMSRSIGDRYLK--------- 203
Query: 230 FQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIV------- 282
P++ +P + K +D LI ASDG+W+ +TDE A E+
Sbjct: 204 ------------PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLW 251
Query: 283 -CKNPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQK 340
KN AG A L +E + E K I+R D+I+V+V+ L +K
Sbjct: 252 HKKNAVAGGASLLADERRKEGKDPAAMSAAEYLS-KLAIQRGSKDNISVVVVDLKPRRK 309
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 132/299 (44%), Gaps = 54/299 (18%)
Query: 56 SATYVGVYDGHGGPEASRFVNKHLFPYL------HKFAMEHGGLSAEVIKKAFHATEEEF 109
+A + GVYDGHGG + + + + + L K + G E KKA + F
Sbjct: 54 AAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNS---F 110
Query: 110 LRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERL 169
LR+ + V P+ +VGS +V + ++VAN GDSRAVL R + A L
Sbjct: 111 LRVDSEIESVAPE--TVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKT--------ALPL 160
Query: 170 STDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPV 229
S DH E+ +EA V+ G R+ G++ +SRSIGD YLK
Sbjct: 161 SVDHKPDREDEAARIEAA----GGKVIQWNGA-RVFGVLAMSRSIGDRYLK--------- 206
Query: 230 FQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIV------- 282
P++ +P + K +D LI ASDG+W+ +TDE A E+
Sbjct: 207 ------------PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLW 254
Query: 283 -CKNPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQK 340
KN AG A L +E + E K I+R D+I+V+V+ L +K
Sbjct: 255 HKKNAVAGDASLLADERRKEGKDPAAMSAAEYLS-KLAIQRGSKDNISVVVVDLKPRRK 312
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 132/299 (44%), Gaps = 54/299 (18%)
Query: 56 SATYVGVYDGHGGPEASRFVNKHLFPYL------HKFAMEHGGLSAEVIKKAFHATEEEF 109
+A + GVYDGHGG + + + + + L K + G E KKA + F
Sbjct: 66 AAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNS---F 122
Query: 110 LRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERL 169
LR+ + V P+ +VGS +V + ++VAN GDSRAVL R + A L
Sbjct: 123 LRVDSEIESVAPE--TVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKT--------ALPL 172
Query: 170 STDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPV 229
S DH E+ +EA V+ G R+ G++ +SRSIGD YLK
Sbjct: 173 SVDHKPDREDEAARIEAA----GGKVIQWNGA-RVFGVLAMSRSIGDRYLK--------- 218
Query: 230 FQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIV------- 282
P++ +P + K +D LI ASDG+W+ +TDE A E+
Sbjct: 219 ------------PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLW 266
Query: 283 -CKNPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQK 340
KN AG A L +E + E K I+R D+I+V+V+ L +K
Sbjct: 267 HKKNAVAGDASLLADERRKEGKDPAAMSAAEYLS-KLAIQRGSKDNISVVVVDLKPRRK 324
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 122 QIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVR 181
++A G+ V + L+VAN GDSRA+LG + D S V LS DHN E
Sbjct: 195 RVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVT---LSNDHNAQNEREV 251
Query: 182 KEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLK------------KPDFYRDPV 229
+ ++ HP + V + R+ G++ R+ GDV K PD D
Sbjct: 252 ERLKLEHPKNEAKSVVKQD--RLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNE 309
Query: 230 FQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIV 282
+ +F P P +TAEP + +LRPQD FL+ A+DGLWE + + V IV
Sbjct: 310 YTKFIPPNYYTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 122 QIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVR 181
++A G+ V + L+VAN GDSRA+LG + D S V LS DHN E
Sbjct: 195 RVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVT---LSNDHNAQNEREL 251
Query: 182 KEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLK------------KPDFYRDPV 229
+ ++ HP + V + R+ G++ R+ GDV K PD D
Sbjct: 252 QRLKLEHPKNEAKSVVKQD--RLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNE 309
Query: 230 FQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIV 282
+ +F P P +TAEP + +LRPQD FL+ A+DGLWE + + V IV
Sbjct: 310 YTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 134/302 (44%), Gaps = 49/302 (16%)
Query: 56 SATYVGVYDGHGGPEASRFVNKHLFPYLHKFAMEH------GGLSAEVIKKAFHATEEEF 109
SA + GVYDGHGG + + + + + L + ++ G E KKA + F
Sbjct: 58 SAHFFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNS---F 114
Query: 110 LRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERL 169
+R+ + V +VGS +V + ++VAN GDSRAVL R K +A L
Sbjct: 115 MRVDSEIETVAHAPETVGSTSVVAVVFPTHIFVANCGDSRAVLCR-----GKTPLA---L 166
Query: 170 STDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPV 229
S DH ++ +EA V+ G R+ G++ +SRSIGD YLK
Sbjct: 167 SVDHKPDRDDEAARIEAA----GGKVIRWNGA-RVFGVLAMSRSIGDRYLK--------- 212
Query: 230 FQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCK----- 284
P++ +P + + +D LI ASDGLW+ +T+E ++ K
Sbjct: 213 ------------PSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDLARKRILLW 260
Query: 285 NPRAGIAKRLVRAALQEAARKREVGYKEIKKL-KRGIRRHFHDDITVIVIYLDHHQKGSS 343
+ + +A + A + K + L K +++ D+I+V+V+ L +K S
Sbjct: 261 HKKNAMAGEALLPAEKRGEGKDPAAMSAAEYLSKMALQKGSKDNISVVVVDLKGIRKFKS 320
Query: 344 NS 345
S
Sbjct: 321 KS 322
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 131/325 (40%), Gaps = 73/325 (22%)
Query: 46 EDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHL-FPYLHKFAMEHGGLSA--------- 95
E S T + + GVYDGHGG + + + L F + LS
Sbjct: 54 EGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELSKRNTGEGRQV 113
Query: 96 ---EVIKKAFHATEEEFLRLVKRVL-----PVRPQIAS--VGSCCLVGAISNDVLYVANL 145
+V F + E + R + V +AS VGS +V + + + V+N
Sbjct: 114 QWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNC 173
Query: 146 GDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIK 205
GDSRAVL R A LS DH E+ +E + V+ +G R+
Sbjct: 174 GDSRAVLFR--------GKEAMPLSVDHKPDREDEYARIE----NAGGKVIQWQGA-RVF 220
Query: 206 GIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFA 265
G++ +SRSIGD YLK P + EP + +D LI A
Sbjct: 221 GVLAMSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILA 259
Query: 266 SDGLWEQLTDEAAVEIV--------CKNPRAGIAKR--LVRAALQEAARKREVGYKEIKK 315
SDGLW+ + ++ EI KN +A+R + A Q AA Y +
Sbjct: 260 SDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAA-----DYLSMLA 314
Query: 316 LKRGIRRHFHDDITVIVIYLDHHQK 340
L++G + D+I++IVI L +K
Sbjct: 315 LQKGSK----DNISIIVIDLKAQRK 335
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 131/325 (40%), Gaps = 73/325 (22%)
Query: 46 EDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYL--------HKFAMEHGGLSAEV 97
E S T + + GVYDGHGG + + + L L + + G +V
Sbjct: 51 EGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQV 110
Query: 98 -----IKKAFHATEEEFLRLVKRVL-----PVRPQIAS--VGSCCLVGAISNDVLYVANL 145
F + E + R + V +AS VGS +V + + + V+N
Sbjct: 111 QWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNC 170
Query: 146 GDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIK 205
GDSRAVL R A LS DH E+ +E + V+ +G R+
Sbjct: 171 GDSRAVLFR--------GKEAMPLSVDHKPDREDEYARIE----NAGGKVIQWQGA-RVF 217
Query: 206 GIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFA 265
G++ +SRSIGD YLK P + EP + +D LI A
Sbjct: 218 GVLAMSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILA 256
Query: 266 SDGLWEQLTDEAAVEIV--------CKNPRAGIAKR--LVRAALQEAARKREVGYKEIKK 315
SDGLW+ + ++ EI KN +A+R + A Q AA Y +
Sbjct: 257 SDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAAD-----YLSMLA 311
Query: 316 LKRGIRRHFHDDITVIVIYLDHHQK 340
L++G + D+I++IVI L +K
Sbjct: 312 LQKGSK----DNISIIVIDLKAQRK 332
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 131/325 (40%), Gaps = 73/325 (22%)
Query: 46 EDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYL--------HKFAMEHGGLSAEV 97
E S T + + GVYDGHGG + + + L L + + G +V
Sbjct: 57 EGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQV 116
Query: 98 -----IKKAFHATEEEFLRLVKRVL-----PVRPQIAS--VGSCCLVGAISNDVLYVANL 145
F + E + R + V +AS VGS +V + + + V+N
Sbjct: 117 QWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNC 176
Query: 146 GDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIK 205
GDSRAVL R A LS DH E+ +E + V+ +G R+
Sbjct: 177 GDSRAVLFR--------GKEAMPLSVDHKPDREDEYARIE----NAGGKVIQWQGA-RVF 223
Query: 206 GIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFA 265
G++ +SRSIGD YLK P + EP + +D LI A
Sbjct: 224 GVLAMSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILA 262
Query: 266 SDGLWEQLTDEAAVEIV--------CKNPRAGIAKR--LVRAALQEAARKREVGYKEIKK 315
SDGLW+ + ++ EI KN +A+R + A Q AA Y +
Sbjct: 263 SDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAA-----DYLSMLA 317
Query: 316 LKRGIRRHFHDDITVIVIYLDHHQK 340
L++G + D+I++IVI L +K
Sbjct: 318 LQKGSK----DNISIIVIDLKAQRK 338
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 131/325 (40%), Gaps = 73/325 (22%)
Query: 46 EDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYL--------HKFAMEHGGLSAEV 97
E S T + + GVYDGHGG + + + L L + + G +V
Sbjct: 55 EGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQV 114
Query: 98 -----IKKAFHATEEEFLRLVKRVL-----PVRPQIAS--VGSCCLVGAISNDVLYVANL 145
F + E + R + V +AS VGS +V + + + V+N
Sbjct: 115 QWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNC 174
Query: 146 GDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIK 205
GDSRAVL R A LS DH E+ +E + V+ +G R+
Sbjct: 175 GDSRAVLFR--------GKEAMPLSVDHKPDREDEYARIE----NAGGKVIQWQGA-RVF 221
Query: 206 GIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFA 265
G++ +SRSIGD YLK P + EP + +D LI A
Sbjct: 222 GVLAMSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILA 260
Query: 266 SDGLWEQLTDEAAVEIV--------CKNPRAGIAKR--LVRAALQEAARKREVGYKEIKK 315
SDGLW+ + ++ EI KN +A+R + A Q AA Y +
Sbjct: 261 SDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAAD-----YLSMLA 315
Query: 316 LKRGIRRHFHDDITVIVIYLDHHQK 340
L++G + D+I++IVI L +K
Sbjct: 316 LQKGSK----DNISIIVIDLKAQRK 336
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 131/325 (40%), Gaps = 73/325 (22%)
Query: 46 EDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYL--------HKFAMEHGGLSAEV 97
E S T + + GVYDGHGG + + + L L + + G +V
Sbjct: 40 EGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQV 99
Query: 98 -----IKKAFHATEEEFLRLVKRVL-----PVRPQIAS--VGSCCLVGAISNDVLYVANL 145
F + E + R + V +AS VGS +V + + + V+N
Sbjct: 100 QWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNC 159
Query: 146 GDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIK 205
GDSRAVL R A LS DH E+ +E + V+ +G R+
Sbjct: 160 GDSRAVLFR--------GKEAMPLSVDHKPDREDEYARIE----NAGGKVIQWQGA-RVF 206
Query: 206 GIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFA 265
G++ +SRSIGD YLK P + EP + +D LI A
Sbjct: 207 GVLAMSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILA 245
Query: 266 SDGLWEQLTDEAAVEIV--------CKNPRAGIAKR--LVRAALQEAARKREVGYKEIKK 315
SDGLW+ + ++ EI KN +A+R + A Q AA Y +
Sbjct: 246 SDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAAD-----YLSMLA 300
Query: 316 LKRGIRRHFHDDITVIVIYLDHHQK 340
L++G + D+I++IVI L +K
Sbjct: 301 LQKGSK----DNISIIVIDLKAQRK 321
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 39/237 (16%)
Query: 57 ATYVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAE-VIKKAFHATEEEFL--RLV 113
++ VYDGHGG E +++ + HL P K +G E +K+AF + L +++
Sbjct: 51 CSFFAVYDGHGGAEVAQYCSLHL-PTFLKTVEAYGRKEFEKALKEAFLGFDATLLQEKVI 109
Query: 114 KRVLPVRPQIASV--------GSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVA 165
+ + + A G +V + LYVAN GDSR V+ R
Sbjct: 110 EELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGK-------- 161
Query: 166 AERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFY 225
A +S DH E E + + + + R + G + +SR+IGD K
Sbjct: 162 ALEMSFDHK---PEDTVEYQRIEKAGGRVTLDGR----VNGGLNLSRAIGDHGYK----- 209
Query: 226 RDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIV 282
+P + ++A P I + P+D F++ A DG+W +T E V+ V
Sbjct: 210 -------MNKSLPAEEQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFV 259
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 131/325 (40%), Gaps = 73/325 (22%)
Query: 46 EDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYL--------HKFAMEHGGLSAEV 97
E S T + + GVYDGHGG + + + L L + + G +V
Sbjct: 64 EGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQV 123
Query: 98 -----IKKAFHATEEEFLRLVKRVL-----PVRPQIAS--VGSCCLVGAISNDVLYVANL 145
F + E + R + V +AS VGS +V + + + V+N
Sbjct: 124 QWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNC 183
Query: 146 GDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIK 205
GDSRAVL R A LS DH E+ +E + V+ +G R+
Sbjct: 184 GDSRAVLFR--------GKEAMPLSVDHKPDREDEYARIE----NAGGKVIQWQGA-RVF 230
Query: 206 GIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFA 265
G++ +SRSIGD YLK P + EP + +D LI A
Sbjct: 231 GVLAMSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILA 269
Query: 266 SDGLWEQLTDEAAVEIV--------CKNPRAGIAKR--LVRAALQEAARKREVGYKEIKK 315
SDGLW+ + ++ EI KN +A+R + A Q AA Y +
Sbjct: 270 SDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAA-----DYLSMLA 324
Query: 316 LKRGIRRHFHDDITVIVIYLDHHQK 340
L++G + D+I++IVI L +K
Sbjct: 325 LQKGSK----DNISIIVIDLKAQRK 345
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 51/261 (19%)
Query: 33 DYSIAVVQANSCLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYL-----HKFA 87
D AVV LED S + VYDGH G + + + HL ++ + A
Sbjct: 40 DAHTAVVGIPHGLEDWS---------FFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAA 90
Query: 88 MEHGG---LSAEVIKKAFHATEEEFLRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVAN 144
+ G LS E +K + ++ +R + GS + IS +Y N
Sbjct: 91 GKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFIN 150
Query: 145 LGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARG---V 201
GDSRAVL R + +V + + DH + +P + + A G +
Sbjct: 151 CGDSRAVLYR----NGQVCFSTQ----DH-----------KPCNPREKERIQNAGGSVMI 191
Query: 202 WRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLF 261
R+ G + VSR++GD K D + P +Q +P P + AE +D F
Sbjct: 192 QRVNGSLAVSRALGDYDYKCVDG-KGPT-EQLVSPEPEVYEILRAE----------EDEF 239
Query: 262 LIFASDGLWEQLTDEAAVEIV 282
+I A DG+W+ +++E E V
Sbjct: 240 IILAXDGIWDVMSNEELCEYV 260
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 59 YVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLP 118
Y VYDGHGGP A+ F + H+ + + L ++ AF ++ F + L
Sbjct: 37 YFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLET-LLTLAFLEIDKAFSSHAR--LS 93
Query: 119 VRPQIASVGSCCLVGAISNDV-LYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGV 177
+ + G+ V + + + L VA++GDSRA+L R K +L+ DH
Sbjct: 94 ADATLLTSGTTATVALLRDGIELVVASVGDSRAILCR--------KGKPMKLTIDH---T 142
Query: 178 EEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPI 237
E + E E + + + G + G + ++RSIGD +
Sbjct: 143 PERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGD--------------------L 182
Query: 238 PLKRPAMTAEPSILIRKL-RPQDLFLIFASDGLWEQLTDEAAVEIV--CKNPR 287
LK + AEP KL D FL+ +DG+ + + + V C +P
Sbjct: 183 DLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPN 235
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 38/232 (16%)
Query: 59 YVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLP 118
Y VYDGHGGP A+ F + H+ + + L ++ AF ++ F + L
Sbjct: 151 YFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLET-LLTLAFLEIDKAFSSHAR--LS 207
Query: 119 VRPQIASVGSCCLVGAISNDV-LYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGV 177
+ + G+ V + + + L VA++GDSRA+L R K +L+ DH
Sbjct: 208 ADATLLTSGTTATVALLRDGIELVVASVGDSRAILCR--------KGKPMKLTIDH---T 256
Query: 178 EEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPI 237
E + E E + + + G + G + ++RSIGD +
Sbjct: 257 PERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGD--------------------L 296
Query: 238 PLKRPAMTAEPSILIRKL-RPQDLFLIFASDGLWEQLTDEAAVEIV--CKNP 286
LK + AEP KL D FL+ +DG+ + + + V C +P
Sbjct: 297 DLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDP 348
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 38/234 (16%)
Query: 56 SATYVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVK- 114
S ++ VYDGH G + +++ +HL ++ G A ++ + FL + +
Sbjct: 52 SWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEH 111
Query: 115 -RVLPVRPQIASVGSCCLVGA-ISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTD 172
RV+ + A VG IS Y N GDSR +L R + KV + D
Sbjct: 112 MRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCR----NRKVHF----FTQD 163
Query: 173 HNVGVEEVRKEVEALHPDDSHIVVYARG---VWRIKGIIQVSRSIGDVYLKKPDFYRDPV 229
H + +P + + A G + R+ G + VSR++GD + K + P
Sbjct: 164 H-----------KPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGD-FDYKCVHGKGPT 211
Query: 230 FQQFGNPIPLKRPAMTAEPSIL-IRKLRPQDLFLIFASDGLWEQLTDEAAVEIV 282
Q ++ EP + I + D F+I A DG+W+ + +E + V
Sbjct: 212 EQ-----------LVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFV 254
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 38/234 (16%)
Query: 56 SATYVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVK- 114
S ++ VYDGH G + +++ +HL ++ G A ++ + FL + +
Sbjct: 52 SWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEH 111
Query: 115 -RVLPVRPQIASVGSCCLVGA-ISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTD 172
RV+ + A VG IS Y N GDSR +L R + KV + D
Sbjct: 112 MRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCR----NRKVHF----FTQD 163
Query: 173 HNVGVEEVRKEVEALHPDDSHIVVYARG---VWRIKGIIQVSRSIGDVYLKKPDFYRDPV 229
H + +P + + A G + R+ G + VSR++GD + K + P
Sbjct: 164 H-----------KPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGD-FDYKCVHGKGPT 211
Query: 230 FQQFGNPIPLKRPAMTAEPSIL-IRKLRPQDLFLIFASDGLWEQLTDEAAVEIV 282
Q ++ EP + I + D F+I A DG+W+ + +E + V
Sbjct: 212 EQ-----------LVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFV 254
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 103/249 (41%), Gaps = 42/249 (16%)
Query: 46 EDQSQVFTSPSATYV-GVYDGHGGPEASRFVNKHLFP--YLHKFAMEHGGLSAE-VIKKA 101
ED F S + ++ GV++G+ G + FV + L L + EH V+ +A
Sbjct: 52 EDSWLKFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQA 111
Query: 102 FHATEEEFLRLVKRVLPVRPQIA-----------SVGSCCLVGAISNDVLYVANLGDSRA 150
F E FL + L + + S G+ +V + N+ LYVAN+G +RA
Sbjct: 112 FDVVERSFLESIDDALAEKASLQLERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRA 171
Query: 151 VLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGII-- 208
+L + D +V +L+ DH E+ + L D I + GII
Sbjct: 172 LLCKSTVDGLQVT----QLNVDHTTENEDELFRLSQLGLDAGKI--------KQVGIICG 219
Query: 209 -QVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQD---LFLIF 264
+ +R IGD +K Y D P+ AEP I +P D FL+
Sbjct: 220 QESTRRIGDYKVKYG--YTDIDLLSAAKSKPI-----IAEPE--IHGAQPLDGVTGFLVL 270
Query: 265 ASDGLWEQL 273
S+GL++ L
Sbjct: 271 MSEGLYKAL 279
>pdb|2POM|A Chain A, Tab1 With Manganese Ion
Length = 372
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 104/268 (38%), Gaps = 61/268 (22%)
Query: 46 EDQSQVFTSPSATYV-GVYDGHGGPEASRFVNKHLFP--YLHKFAMEHGGLSAE-VIKKA 101
ED F S + ++ GV++G+ G + FV + L L + EH V+ +A
Sbjct: 52 EDSWLKFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQA 111
Query: 102 FHATEEEFLRLVKRVLPVR-----------------PQIASV-------------GSCCL 131
F E FL + L + PQ + G+ +
Sbjct: 112 FDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAV 171
Query: 132 VGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDD 191
V + N+ LYVAN+G +RA+L + D +V +L+ DH E+ + L D
Sbjct: 172 VAVLLNNKLYVANVGTNRALLCKSTVDGLQVT----QLNVDHTTENEDELFRLSQLGLDA 227
Query: 192 SHIVVYARGVWRIKGII---QVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEP 248
I + GII + +R IGD +K Y D P+ AEP
Sbjct: 228 GKI--------KQVGIICGQESTRRIGDYKVKYG--YTDIDLLSAAKSKPI-----IAEP 272
Query: 249 SILIRKLRPQD---LFLIFASDGLWEQL 273
I +P D FL+ S+GL++ L
Sbjct: 273 E--IHGAQPLDGVTGFLVLMSEGLYKAL 298
>pdb|2J4O|A Chain A, Structure Of Tab1
Length = 401
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 104/268 (38%), Gaps = 61/268 (22%)
Query: 46 EDQSQVFTSPSATYV-GVYDGHGGPEASRFVNKHLFP--YLHKFAMEHGGLSAE-VIKKA 101
ED F S + ++ GV++G+ G + FV + L L + EH V+ +A
Sbjct: 50 EDSWLKFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQA 109
Query: 102 FHATEEEFLRLVKRVLPVR-----------------PQIASV-------------GSCCL 131
F E FL + L + PQ + G+ +
Sbjct: 110 FDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAV 169
Query: 132 VGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDD 191
V + N+ LYVAN+G +RA+L + D +V +L+ DH E+ + L D
Sbjct: 170 VAVLLNNKLYVANVGTNRALLCKSTVDGLQVT----QLNVDHTTENEDELFRLSQLGLDA 225
Query: 192 SHIVVYARGVWRIKGII---QVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEP 248
I + GII + +R IGD +K D + PI AEP
Sbjct: 226 GKI--------KQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPI-------IAEP 270
Query: 249 SILIRKLRPQD---LFLIFASDGLWEQL 273
I +P D FL+ S+GL++ L
Sbjct: 271 E--IHGAQPLDGVTGFLVLMSEGLYKAL 296
>pdb|2IRM|A Chain A, Crystal Structure Of Mitogen-Activated Protein Kinase
Kinase Kinase 7 Interacting Protein 1 From Anopheles
Gambiae
Length = 358
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 38/227 (16%)
Query: 125 SVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHN-VGVEEVRKE 183
SVGS ++ I LY+ N+G+ RA+L + D+ + +LS DHN + EE +
Sbjct: 152 SVGSSAVLALIHRSHLYLGNIGNCRALLCKTDEHDT---LTVTQLSVDHNLLNAEEAAR- 207
Query: 184 VEALHPDDSHIVVYARGVW--RIKGI-IQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLK 240
++ G+ +G+ + +R IG+ YL K Y+D F P
Sbjct: 208 ------------LFRLGLMAQNFEGVPLYSTRCIGN-YLGKAG-YKDCNFLSSATAEP-- 251
Query: 241 RPAMTAEPSILIR-KLRPQDLFLIFASDGLWEQLTDEAAVEIVCKNPRAGIAKRLVRAAL 299
+ EP I+ ++ P FL+ S GL L EI + G + LVR
Sbjct: 252 ---VIFEPEIVGGIQITPACRFLVLMSSGLCRALH-----EIFPGDASTG-NRELVRMIS 302
Query: 300 QEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGSSNSR 346
+E + +G + R ++ H HD +V + H+ + NSR
Sbjct: 303 EEFQNQSTLGGVAQSVVHRIVQAH-HDTYMQLV---EEHRSVTFNSR 345
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 239 LKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCKNPRAG--IAKRLVR 296
LK ++ +P + + ++ PQ I A+DGLW+ + AVEI + + G A+ LV
Sbjct: 238 LKXYGLSNQPDVRVVRVTPQHRVXILATDGLWDVXSAAQAVEIAXQARQEGRNPAQALVE 297
Query: 297 AALQEAARKRE 307
L E + +
Sbjct: 298 XTLAEQQSRNQ 308
>pdb|4GG4|A Chain A, Crystal Structure Of The Tal Effector Dhax3 Bound To
Specific Dna-Rna Hybrid
Length = 499
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 59 YVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLP 118
V + GG +A V + L P L + HG +V+ A H ++ L V+R+LP
Sbjct: 371 VVAIASNGGGKQALETVQR-LLPVLCQA---HGLTPEQVVAIASHDGGKQALETVQRLLP 426
Query: 119 VRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGV 177
V C G V+ +A+ G R L V+ S+ A L+ DH V +
Sbjct: 427 VL--------CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVAL 477
>pdb|4GJR|A Chain A, Crystal Structure Of The Tal Effector Dhax3 Bound To
Methylated Dsdna
pdb|4GJR|B Chain B, Crystal Structure Of The Tal Effector Dhax3 Bound To
Methylated Dsdna
Length = 499
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 59 YVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLP 118
V + GG +A V + L P L + HG +V+ A H ++ L V+R+LP
Sbjct: 371 VVAIASNGGGKQALETVQR-LLPVLCQA---HGLTPEQVVAIASHDGGKQALETVQRLLP 426
Query: 119 VRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGV 177
V C G V+ +A+ G R L V+ S+ A L+ DH V +
Sbjct: 427 VL--------CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVAL 477
>pdb|3V6T|A Chain A, Crystal Structure Of The Dna-Bound Dhax3, A Tal Effector,
At 1.85 Angstrom
pdb|3V6T|B Chain B, Crystal Structure Of The Dna-Bound Dhax3, A Tal Effector,
At 1.85 Angstrom
Length = 499
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 59 YVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLP 118
V + GG +A V + L P L HG +V+ A H ++ L V+R+LP
Sbjct: 378 VVAIASNGGGKQALETVQR-LLPVL---CQAHGLTPEQVVAIASHDGGKQALETVQRLLP 433
Query: 119 VRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGV 177
V C G V+ +A+ G R L V+ S+ A L+ DH V +
Sbjct: 434 VL--------CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVAL 484
>pdb|4GJP|A Chain A, Crystal Structure Of The Tal Effector Dhax3 Bound To Dsdna
Containing Repetitive Methyl-Cpg
pdb|4GJP|B Chain B, Crystal Structure Of The Tal Effector Dhax3 Bound To Dsdna
Containing Repetitive Methyl-Cpg
Length = 499
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 59 YVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLP 118
V + GG +A V + L P L + HG +V+ A H ++ L V+R+LP
Sbjct: 371 VVAIASNGGGKQALETVQR-LLPVLCQA---HGLTPEQVVAIASHDGGKQALETVQRLLP 426
Query: 119 VRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGV 177
V C G V+ +A+ G R L V+ S+ A L+ DH V +
Sbjct: 427 VL--------CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVAL 477
>pdb|3V6P|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Dhax3, A
Tal Effector
Length = 442
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 59 YVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLP 118
V + GG +A V + L P L HG +V+ A H ++ L V+R+LP
Sbjct: 331 VVAIASNGGGKQALETVQR-LLPVL---CQAHGLTPEQVVAIASHDGGKQALETVQRLLP 386
Query: 119 VRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTD 172
V C G V+ +A+ G R L V+ S+ A L+ D
Sbjct: 387 VL--------CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 432
>pdb|2CM1|A Chain A, Crystal Structure Of The Catalytic Domain Of Serine
Threonine Protein Phosphatase Pstp In Complex With 2
Manganese Ions
Length = 260
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 247 EPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCKNPRAGIAKRLVRAALQ 300
EP++ +R+ R D +L+ SDGL + ++DE +E + A A RL+ AL+
Sbjct: 192 EPTLTMREARAGDRYLL-CSDGLSDPVSDETILEALQIPEVAESAHRLIELALR 244
>pdb|3UGM|A Chain A, Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
Length = 1047
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 57 ATYVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRV 116
A V + +GG +A V + L P L HG A+V+ A H ++ L ++R+
Sbjct: 190 AQVVAIASNNGGKQALETVQR-LLPVL---CQAHGLTPAQVVAIASHDGGKQALETMQRL 245
Query: 117 LPV 119
LPV
Sbjct: 246 LPV 248
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 66 HGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLPVRPQIAS 125
+GG +A V + L P L +HG +V+ A ++ ++ L V+R+LPV
Sbjct: 911 NGGKQALETVQR-LLPVL---CQDHGLTPDQVVAIASNSGGKQALETVQRLLPVL----- 961
Query: 126 VGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGV 177
C G N V+ +A+ G +A L V+ S+ A L+ DH V +
Sbjct: 962 ---CQDHGLTPNQVVAIASNGGKQA-LESIVAQLSRPDPALAALTNDHLVAL 1009
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 59 YVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLP 118
V + GG +A V + L P L HG A+V+ A H ++ L V+R+LP
Sbjct: 599 VVAIASNIGGKQALETVQR-LLPVL---CQAHGLTPAQVVAIASHDGGKQALETVQRLLP 654
Query: 119 VRPQIASVGSCCLVGAISNDVLYVANLGDSRAVL 152
V C G + V+ +A+ G + L
Sbjct: 655 VL--------CQAHGLTPDQVVAIASNGGGKQAL 680
>pdb|1TXO|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A.
pdb|1TXO|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A
Length = 237
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 247 EPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCKNPRAGIAKRLVRAALQ 300
EP++ R+ R D +L+ SDGL + ++DE +E + A A RL+ AL+
Sbjct: 169 EPTLTXREARAGDRYLL-CSDGLSDPVSDETILEALQIPEVAESAHRLIELALR 221
>pdb|2VGA|A Chain A, The Structure Of Vaccinia Virus A41
Length = 207
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 43 SCLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAF 102
S +E QS + TYV +YD G + +H P L + G +++KK F
Sbjct: 151 SMIELQSDYCVNDVTTYVKIYDECGN------IKQHSIPTLRDYFTTKNGQPRKILKKKF 204
>pdb|4HPZ|A Chain A, Crystal Structure Of A Tale Protein Reveals An Extended
N-terminal Dna Binding Region
Length = 463
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 67 GGPEASRFVNKHLFPYLHKFAMEHGGLSAEVIKKAFHATEEEFLRLVKRVLPVRPQIASV 126
GG +A V + L P L +HG A+ + A + ++ L V+R+LPV
Sbjct: 359 GGKQALETVQR-LLPVL---CQDHGLTPAQAVAIANNNGGKQALETVQRLLPVL------ 408
Query: 127 GSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGV 177
C G + V+ +A+ G + L V+ S A L+ DH V +
Sbjct: 409 --CQDHGLTPDQVVAIASNGGGKQALESIVAQLSCPDPALAALTNDHLVAL 457
>pdb|2GU9|A Chain A, Crystal Structure Of Xc5357 From Xanthomonas Campestris: A
Putative Tetracenomycin Polyketide Synthesis Protein
Adopting A Novel Cupin Subfamily Structure
pdb|2GU9|B Chain B, Crystal Structure Of Xc5357 From Xanthomonas Campestris: A
Putative Tetracenomycin Polyketide Synthesis Protein
Adopting A Novel Cupin Subfamily Structure
Length = 113
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 212 RSIGDVYLKKPDFYRDPVFQQFGNPIP 238
R+ GD LK +FY P + G P+P
Sbjct: 83 RNTGDTPLKTVNFYHPPAYDAQGEPLP 109
>pdb|3H50|A Chain A, Crystal Structure Of A Tetracenomycin Polyketide Synthesis
Protein (Tcmj) From Xanthomonas Campestris Pv.
Campestris At 1.60 A Resolution
Length = 114
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 212 RSIGDVYLKKPDFYRDPVFQQFGNPIP 238
R+ GD LK +FY P + G P+P
Sbjct: 84 RNTGDTPLKTVNFYHPPAYDAQGEPLP 110
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 84/238 (35%), Gaps = 96/238 (40%)
Query: 55 PSATYVGVYDGHGGPEASRFVNKHLFPYLHKFA------MEHGGLS--AEVIKK------ 100
P+ V+DGH G S++ KH +L K + ++ LS AE+I+K
Sbjct: 41 PNVRIKAVFDGHAGEATSQYCAKHAAKHLGKLSEFTFAEVKKACLSLDAEIIRKLGPKHV 100
Query: 101 --------------------------AFHATEEEFLRLVK------------------RV 116
A EE F+ L K RV
Sbjct: 101 AGSTGIIVAIERLSAPVVENVVGREIVPRAHEETFVPLEKLIQEEEEAEHPELVGRYPRV 160
Query: 117 LPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVG 176
V+ + GS LV AI N+GDSRA L + D + RLS DH
Sbjct: 161 PDVQQKTIPAGS-FLVTAI--------NIGDSRATL---IHSDGGLT----RLSKDHKPN 204
Query: 177 VEEVRKEVEALHPDDSHIVVYARG------VWRIKGIIQVSRSIGDVYLKKPDFYRDP 228
HP ++ + A G V R+ G++ +SR+ GD DF +P
Sbjct: 205 -----------HPTEASRIEKAGGSVETFDVPRVDGVLALSRAFGD-----SDFKXNP 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,048,856
Number of Sequences: 62578
Number of extensions: 444588
Number of successful extensions: 1148
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 123
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)