BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016791
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/165 (68%), Positives = 130/165 (78%), Gaps = 8/165 (4%)
Query: 15 NLPPGFRFHPTDEELVVHYLKKKASSAPLPVSIIAEVDLYKFDPWELPAKATFGEQEWYF 74
NLPPGFRFHPTD+ELV HYL +KA+ LPV IIAEVDLYKFDPW+LP +A FG +EWYF
Sbjct: 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYF 73
Query: 75 FSPRDRKYPNGARPNRAATSGYWKATGTDKPVMSSGSNQKVGVKKALVFYGGKPPKGIKT 134
F+PRDRKYPNG+RPNRAA +GYWKATG DKPV G + +G+KKALVFY GK P+G+KT
Sbjct: 74 FTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG--RTLGIKKALVFYAGKAPRGVKT 131
Query: 135 NWIMHEYRLTDNKVSNKPPGCDLGNKKNSLRLDDWVLCRIYKKNN 179
+WIMHEYRL D + G KK SLRLDDWVLCR+Y K N
Sbjct: 132 DWIMHEYRLADAGRAAA------GAKKGSLRLDDWVLCRLYNKKN 170
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/167 (65%), Positives = 126/167 (75%), Gaps = 13/167 (7%)
Query: 13 QPNLPPGFRFHPTDEELVVHYLKKKASSAPLPVSIIAEVDLYKFDPWELPAKATFGEQEW 72
Q +LPPGFRF+PTDEEL+V YL +KA+ + +IAE+DLYKFDPW LP KA FGE+EW
Sbjct: 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEW 73
Query: 73 YFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVMSSGSNQKVGVKKALVFYGGKPPKGI 132
YFFSPRDRKYPNG+RPNR A SGYWKATGTDK + + G Q+VG+KKALVFY GK PKG
Sbjct: 74 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKAPKGT 131
Query: 133 KTNWIMHEYRLTDNKVSNKPPGCDLGNKKNSLRLDDWVLCRIYKKNN 179
KTNWIMHEYRL + N S +LDDWVLCRIYKK +
Sbjct: 132 KTNWIMHEYRLIEPSRRN-----------GSTKLDDWVLCRIYKKQS 167
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/167 (65%), Positives = 126/167 (75%), Gaps = 13/167 (7%)
Query: 13 QPNLPPGFRFHPTDEELVVHYLKKKASSAPLPVSIIAEVDLYKFDPWELPAKATFGEQEW 72
Q +LPPGFRF+PTDEEL+V YL +KA+ + +IAE+DLYKFDPW LP KA FGE+EW
Sbjct: 17 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEW 76
Query: 73 YFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVMSSGSNQKVGVKKALVFYGGKPPKGI 132
YFFSPRDRKYPNG+RPNR A SGYWKATGTDK + + G Q+VG+KKALVFY GK PKG
Sbjct: 77 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKAPKGT 134
Query: 133 KTNWIMHEYRLTDNKVSNKPPGCDLGNKKNSLRLDDWVLCRIYKKNN 179
KTNWIMHEYRL + N S +LDDWVLCRIYKK +
Sbjct: 135 KTNWIMHEYRLIEPSRRN-----------GSTKLDDWVLCRIYKKQS 170
>pdb|2P3Y|A Chain A, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus.
Northeast Structural Genomics Target Vpr109
pdb|2P3Y|B Chain B, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus.
Northeast Structural Genomics Target Vpr109
Length = 491
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 88 PNRAATSGYWKATGTDK------------PVMSSGSNQKVGVKKAL-VFYGGKPPKGIKT 134
P S +W T D+ P +SS N KV ++ V+YG KP KG +
Sbjct: 386 PANVPASNFWSTTVYDENNRLXIINDAGSPDISSRKNLKVNSDGSIDVYYGPKPVKGYEN 445
Query: 135 NWI 137
NW+
Sbjct: 446 NWV 448
>pdb|3VB9|A Chain A, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|B Chain B, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|C Chain C, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|D Chain D, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
Length = 483
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 88 PNRAATSGYWKATGTDK------------PVMSSGSNQKVGVKKAL-VFYGGKPPKGIKT 134
P S +W T D+ P +SS N KV ++ V+YG KP KG +
Sbjct: 386 PANVPASNFWSTTVYDENNRLXIINDAGSPDISSRKNLKVNSDGSIDVYYGPKPVKGYEN 445
Query: 135 NWI 137
NW+
Sbjct: 446 NWV 448
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 17 PPGFRFHPTDEELVVHYL----------KKKASSAPLPVSIIAE-VDLYKFDPWELPAKA 65
P G R HP +E H+L + S P +I +E +++ PWE+P +
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRD 74
Query: 66 TF 67
F
Sbjct: 75 WF 76
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 17 PPGFRFHPTDEELVVHYL----------KKKASSAPLPVSIIAE-VDLYKFDPWELPAKA 65
P G R HP +E H+L + S P +I +E +++ PWE+P +
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRD 74
Query: 66 TF 67
F
Sbjct: 75 WF 76
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 17 PPGFRFHPTDEELVVHYL----------KKKASSAPLPVSIIAE-VDLYKFDPWELPAKA 65
P G R HP +E H+L + S P +I +E +++ PWE+P +
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRD 74
Query: 66 TF 67
F
Sbjct: 75 WF 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,330,927
Number of Sequences: 62578
Number of extensions: 447291
Number of successful extensions: 617
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 9
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)