Query 016791
Match_columns 382
No_of_seqs 180 out of 980
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.1E-55 3.9E-60 401.0 13.9 161 11-179 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 2.2E-55 7.5E-60 398.0 13.2 157 11-180 12-168 (171)
3 1cmb_A Met APO-repressor; DNA- 19.5 85 0.0029 25.6 3.3 39 23-65 50-88 (104)
4 3nr5_A MAF1, repressor of RNA 16.9 25 0.00086 31.3 -0.4 12 48-59 119-130 (164)
5 1ldd_A APC2WHB, anaphase promo 16.8 70 0.0024 24.8 2.2 27 17-44 37-64 (74)
6 3cpr_A Dihydrodipicolinate syn 11.4 86 0.0029 29.6 1.6 19 15-34 117-135 (304)
7 3dz1_A Dihydrodipicolinate syn 10.8 1E+02 0.0036 29.1 2.0 18 15-34 108-125 (313)
8 3fkr_A L-2-keto-3-deoxyarabona 10.6 1.2E+02 0.0041 28.7 2.4 28 15-44 109-139 (309)
9 1f6k_A N-acetylneuraminate lya 10.3 1.1E+02 0.0036 28.7 1.8 18 16-34 106-123 (293)
10 2ehh_A DHDPS, dihydrodipicolin 10.1 1.1E+02 0.0037 28.7 1.8 18 16-34 102-119 (294)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-55 Score=401.03 Aligned_cols=161 Identities=70% Similarity=1.306 Sum_probs=136.7
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHhHcCCCCCccceeecCCCCCCCCCcCccccCCceeEEEeccCCCCCCCCCCCcc
Q 016791 11 SPQPNLPPGFRFHPTDEELVVHYLKKKASSAPLPVSIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNR 90 (382)
Q Consensus 11 ~~~~~LPPGfRF~PTDEELI~~YLrpKi~G~plp~~iI~evDVY~~ePweLP~~~~~Ge~eWYFFspr~rK~~nG~R~~R 90 (382)
..++.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..|+++||||+++++||++|.|++|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 45689999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred ccCCCeeeecCCCccEEcCCCCeEEEEEEEEEEecCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q 016791 91 AATSGYWKATGTDKPVMSSGSNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRLTDNKVSNKPPGCDLGNKKNSLRLDDWV 170 (382)
Q Consensus 91 atggGyWKatG~~K~I~~~~G~~vVG~KKtLvFY~gk~pkg~KT~WvMhEYrL~~~~~~~~pp~~~~~~~~~~~~~dd~V 170 (382)
++++||||++|++++|... +.+||+||+|+||.+++|++.||+|+||||+|....... ...+.+.++.++||
T Consensus 90 ~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~------~~~~~~~~~~~~wV 161 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAA------AGAKKGSLRLDDWV 161 (174)
T ss_dssp EETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------------CCSSEE
T ss_pred ecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcc------cccccCCCCCCCEE
Confidence 9999999999999999753 589999999999999999999999999999999864221 01122334578999
Q ss_pred EEEEEEeCC
Q 016791 171 LCRIYKKNN 179 (382)
Q Consensus 171 LCRIykK~~ 179 (382)
|||||+|++
T Consensus 162 lCrvf~K~~ 170 (174)
T 3ulx_A 162 LCRLYNKKN 170 (174)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEcCC
Confidence 999999875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.2e-55 Score=398.03 Aligned_cols=157 Identities=68% Similarity=1.211 Sum_probs=133.2
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHhHcCCCCCccceeecCCCCCCCCCcCccccCCceeEEEeccCCCCCCCCCCCcc
Q 016791 11 SPQPNLPPGFRFHPTDEELVVHYLKKKASSAPLPVSIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNR 90 (382)
Q Consensus 11 ~~~~~LPPGfRF~PTDEELI~~YLrpKi~G~plp~~iI~evDVY~~ePweLP~~~~~Ge~eWYFFspr~rK~~nG~R~~R 90 (382)
..+..|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++++||||+++++|+++|.|++|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence 56789999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred ccCCCeeeecCCCccEEcCCCCeEEEEEEEEEEecCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q 016791 91 AATSGYWKATGTDKPVMSSGSNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRLTDNKVSNKPPGCDLGNKKNSLRLDDWV 170 (382)
Q Consensus 91 atggGyWKatG~~K~I~~~~G~~vVG~KKtLvFY~gk~pkg~KT~WvMhEYrL~~~~~~~~pp~~~~~~~~~~~~~dd~V 170 (382)
++++||||++|++++|... +.+||+||+|+||.+++|++.||+|+||||+|...... .+....++||
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~-----------~~~~~~~~~V 158 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR-----------NGSTKLDDWV 158 (171)
T ss_dssp EETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-------------------CCEE
T ss_pred cCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc-----------cCcccCCCEE
Confidence 9999999999999999863 48999999999999999999999999999999986411 1122368999
Q ss_pred EEEEEEeCCC
Q 016791 171 LCRIYKKNNL 180 (382)
Q Consensus 171 LCRIykK~~~ 180 (382)
|||||+|...
T Consensus 159 lCrv~~k~~~ 168 (171)
T 1ut7_A 159 LCRIYKKQSS 168 (171)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEcCCC
Confidence 9999999865
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=19.47 E-value=85 Score=25.62 Aligned_cols=39 Identities=33% Similarity=0.467 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHhHcCCCCCccceeecCCCCCCCCCcCccc
Q 016791 23 HPTDEELVVHYLKKKASSAPLPVSIIAEVDLYKFDPWELPAKA 65 (382)
Q Consensus 23 ~PTDEELI~~YLrpKi~G~plp~~iI~evDVY~~ePweLP~~~ 65 (382)
|-|.-||++.-...-..|+|||. +.|+-+..|.++|+.+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 57888998877777889999996 4689999999999764
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=16.87 E-value=25 Score=31.34 Aligned_cols=12 Identities=42% Similarity=0.941 Sum_probs=10.7
Q ss_pred eeecCCCCCCCC
Q 016791 48 IAEVDLYKFDPW 59 (382)
Q Consensus 48 I~evDVY~~ePw 59 (382)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 678999999998
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=16.85 E-value=70 Score=24.85 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=21.7
Q ss_pred CCCceeCC-ChHHHHHHHHHHhHcCCCCC
Q 016791 17 PPGFRFHP-TDEELVVHYLKKKASSAPLP 44 (382)
Q Consensus 17 PPGfRF~P-TDEELI~~YLrpKi~G~plp 44 (382)
|.|+.|.. |++||-. ||-.|+....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 66899998 9999875 999999876543
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=11.42 E-value=86 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.593 Sum_probs=14.8
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 016791 15 NLPPGFRFHPTDEELVVHYL 34 (382)
Q Consensus 15 ~LPPGfRF~PTDEELI~~YL 34 (382)
-+|| |.|.|++++|+.||-
T Consensus 117 v~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 117 VVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHH
Confidence 3466 558899999998874
No 7
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=10.80 E-value=1e+02 Score=29.14 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=13.4
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 016791 15 NLPPGFRFHPTDEELVVHYL 34 (382)
Q Consensus 15 ~LPPGfRF~PTDEELI~~YL 34 (382)
-+|| | |.||+++|+.||-
T Consensus 108 v~~P-~-~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 108 IAPP-P-SLRTDEQITTYFR 125 (313)
T ss_dssp ECCC-T-TCCSHHHHHHHHH
T ss_pred ECCC-C-CCCCHHHHHHHHH
Confidence 3566 4 5699999998775
No 8
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=10.61 E-value=1.2e+02 Score=28.68 Aligned_cols=28 Identities=18% Similarity=0.653 Sum_probs=18.2
Q ss_pred CCCCCce---eCCChHHHHHHHHHHhHcCCCCC
Q 016791 15 NLPPGFR---FHPTDEELVVHYLKKKASSAPLP 44 (382)
Q Consensus 15 ~LPPGfR---F~PTDEELI~~YLrpKi~G~plp 44 (382)
-+|| |. |.||+++|+.||-. -+...++|
T Consensus 109 v~~P-yy~~~~~~s~~~l~~~f~~-va~a~~lP 139 (309)
T 3fkr_A 109 AMPP-YHGATFRVPEAQIFEFYAR-VSDAIAIP 139 (309)
T ss_dssp ECCS-CBTTTBCCCHHHHHHHHHH-HHHHCSSC
T ss_pred EcCC-CCccCCCCCHHHHHHHHHH-HHHhcCCC
Confidence 4566 44 79999999987753 33333455
No 9
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=10.26 E-value=1.1e+02 Score=28.75 Aligned_cols=18 Identities=22% Similarity=0.323 Sum_probs=14.0
Q ss_pred CCCCceeCCChHHHHHHHH
Q 016791 16 LPPGFRFHPTDEELVVHYL 34 (382)
Q Consensus 16 LPPGfRF~PTDEELI~~YL 34 (382)
+|| |.|.|++++|+.||-
T Consensus 106 ~~P-~y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYD 123 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 448899999998775
No 10
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=10.11 E-value=1.1e+02 Score=28.70 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=14.1
Q ss_pred CCCCceeCCChHHHHHHHH
Q 016791 16 LPPGFRFHPTDEELVVHYL 34 (382)
Q Consensus 16 LPPGfRF~PTDEELI~~YL 34 (382)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHFK 119 (294)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 458899999999875
Done!