Query 016792
Match_columns 382
No_of_seqs 262 out of 821
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2817 Predicted E3 ubiquitin 100.0 1.3E-93 2.7E-98 688.0 31.5 381 1-382 1-394 (394)
2 KOG0396 Uncharacterized conser 100.0 2.7E-63 5.8E-68 472.6 26.7 367 5-382 11-388 (389)
3 COG5109 Uncharacterized conser 100.0 1.7E-55 3.6E-60 409.4 23.8 355 21-382 14-396 (396)
4 PF10607 CLTH: CTLH/CRA C-term 100.0 9.5E-32 2.1E-36 233.9 12.6 142 147-288 2-145 (145)
5 KOG2659 LisH motif-containing 99.9 2.7E-24 5.8E-29 196.3 15.7 178 102-281 21-201 (228)
6 smart00757 CRA CT11-RanBPM. pr 99.7 4.2E-17 9.1E-22 132.5 7.0 92 200-291 2-97 (99)
7 PF13445 zf-RING_UBOX: RING-ty 99.6 5.3E-16 1.1E-20 106.6 2.5 42 325-366 1-43 (43)
8 smart00668 CTLH C-terminal to 99.3 8E-12 1.7E-16 91.3 6.1 55 147-201 2-56 (58)
9 smart00504 Ubox Modified RING 99.1 1.2E-10 2.7E-15 86.5 3.6 52 323-380 2-53 (63)
10 PF15227 zf-C3HC4_4: zinc fing 98.8 1.7E-09 3.7E-14 74.1 2.6 41 325-368 1-42 (42)
11 PF04564 U-box: U-box domain; 98.8 5.7E-09 1.2E-13 80.3 3.3 52 322-378 4-55 (73)
12 PLN03208 E3 ubiquitin-protein 98.6 2.3E-08 5.1E-13 89.9 4.4 58 321-381 17-87 (193)
13 PF14634 zf-RING_5: zinc-RING 98.6 2.8E-08 6E-13 68.8 3.7 43 325-370 2-44 (44)
14 KOG0320 Predicted E3 ubiquitin 98.5 5.6E-08 1.2E-12 85.5 3.5 59 320-382 129-187 (187)
15 PF04641 Rtf2: Rtf2 RING-finge 98.5 7.3E-08 1.6E-12 92.0 3.2 58 319-380 110-168 (260)
16 PF13639 zf-RING_2: Ring finge 98.5 6.8E-08 1.5E-12 66.7 1.7 43 324-369 2-44 (44)
17 PF00097 zf-C3HC4: Zinc finger 98.4 2.9E-07 6.4E-12 62.4 3.1 40 325-368 1-41 (41)
18 PF13923 zf-C3HC4_2: Zinc fing 98.3 3.4E-07 7.5E-12 61.5 2.8 38 325-368 1-39 (39)
19 KOG0293 WD40 repeat-containing 98.3 3.4E-06 7.3E-11 83.1 10.6 174 106-287 16-215 (519)
20 KOG0978 E3 ubiquitin ligase in 98.2 5.2E-07 1.1E-11 95.0 2.7 60 318-382 639-698 (698)
21 TIGR00599 rad18 DNA repair pro 98.2 8.9E-07 1.9E-11 88.6 3.7 57 317-379 21-77 (397)
22 PF11789 zf-Nse: Zinc-finger o 98.2 7E-07 1.5E-11 65.2 2.2 43 322-368 11-54 (57)
23 TIGR00570 cdk7 CDK-activating 98.1 1.7E-06 3.6E-11 83.5 4.1 57 323-382 4-63 (309)
24 smart00184 RING Ring finger. E 98.1 3.8E-06 8.2E-11 55.0 3.8 39 325-368 1-39 (39)
25 PF13920 zf-C3HC4_3: Zinc fing 98.1 2.9E-06 6.4E-11 60.2 3.5 45 323-373 3-48 (50)
26 cd00162 RING RING-finger (Real 98.1 4E-06 8.8E-11 56.8 3.5 44 324-371 1-44 (45)
27 KOG3113 Uncharacterized conser 98.0 3.1E-06 6.7E-11 78.3 2.5 58 318-380 107-165 (293)
28 KOG0823 Predicted E3 ubiquitin 98.0 4.8E-06 1E-10 76.5 3.3 61 318-381 43-103 (230)
29 PHA02929 N1R/p28-like protein; 97.8 1.4E-05 3E-10 74.9 3.4 49 322-373 174-227 (238)
30 KOG2164 Predicted E3 ubiquitin 97.7 1.9E-05 4.1E-10 80.0 2.5 57 322-381 186-244 (513)
31 KOG0317 Predicted E3 ubiquitin 97.7 3.2E-05 6.9E-10 73.2 3.8 58 317-380 234-291 (293)
32 KOG0287 Postreplication repair 97.6 1.6E-05 3.5E-10 76.4 0.9 61 313-379 14-74 (442)
33 PF08513 LisH: LisH; InterPro 97.6 9.8E-05 2.1E-09 45.5 4.0 27 108-134 1-27 (27)
34 smart00667 LisH Lissencephaly 97.6 0.00013 2.9E-09 46.6 4.5 32 106-137 2-33 (34)
35 KOG2177 Predicted E3 ubiquitin 97.5 3.4E-05 7.4E-10 73.1 1.7 46 318-369 9-54 (386)
36 PHA02926 zinc finger-like prot 97.5 0.0001 2.2E-09 67.6 4.2 57 323-379 171-236 (242)
37 KOG2879 Predicted E3 ubiquitin 97.5 7.8E-05 1.7E-09 70.1 3.1 58 318-378 235-292 (298)
38 COG5574 PEX10 RING-finger-cont 97.4 7.9E-05 1.7E-09 69.8 2.5 64 301-377 202-266 (271)
39 KOG3039 Uncharacterized conser 97.3 0.00014 3.1E-09 67.3 2.9 56 321-379 220-276 (303)
40 PF12678 zf-rbx1: RING-H2 zinc 97.1 0.00042 9.1E-09 53.2 3.0 43 324-369 21-73 (73)
41 COG5432 RAD18 RING-finger-cont 97.0 0.00035 7.6E-09 66.1 2.0 60 313-378 16-75 (391)
42 PF14447 Prok-RING_4: Prokaryo 96.8 0.0005 1.1E-08 49.3 1.3 51 319-377 4-54 (55)
43 KOG1734 Predicted RING-contain 96.5 0.00068 1.5E-08 63.6 -0.1 55 320-375 222-283 (328)
44 COG5540 RING-finger-containing 96.4 0.0017 3.7E-08 61.9 2.4 49 323-373 324-372 (374)
45 COG5243 HRD1 HRD ubiquitin lig 96.3 0.0031 6.7E-08 61.8 3.2 51 319-372 284-344 (491)
46 KOG0802 E3 ubiquitin ligase [P 96.1 0.0033 7.3E-08 66.3 2.4 53 320-375 289-343 (543)
47 KOG0828 Predicted E3 ubiquitin 96.0 0.0042 9E-08 62.9 2.6 103 265-371 475-632 (636)
48 PF12861 zf-Apc11: Anaphase-pr 96.0 0.01 2.2E-07 46.7 4.1 52 324-376 34-85 (85)
49 PF14835 zf-RING_6: zf-RING of 95.6 0.0026 5.7E-08 47.2 -0.5 50 321-378 6-56 (65)
50 smart00744 RINGv The RING-vari 95.4 0.027 5.9E-07 39.7 4.1 44 324-369 1-49 (49)
51 KOG4628 Predicted E3 ubiquitin 95.3 0.011 2.4E-07 58.3 2.4 49 323-373 230-278 (348)
52 KOG0826 Predicted E3 ubiquitin 94.9 0.02 4.4E-07 55.4 3.1 54 323-381 301-354 (357)
53 KOG1814 Predicted E3 ubiquitin 94.9 0.015 3.2E-07 57.9 2.0 59 320-378 182-247 (445)
54 KOG1941 Acetylcholine receptor 94.4 0.14 3.1E-06 50.8 7.5 190 150-370 209-413 (518)
55 PF02891 zf-MIZ: MIZ/SP-RING z 94.3 0.039 8.6E-07 39.1 2.7 44 323-370 3-49 (50)
56 KOG0311 Predicted E3 ubiquitin 94.3 0.0083 1.8E-07 58.6 -1.2 52 318-373 39-90 (381)
57 COG5152 Uncharacterized conser 94.2 0.025 5.4E-07 51.0 1.7 46 322-373 196-241 (259)
58 KOG0824 Predicted E3 ubiquitin 94.1 0.028 6E-07 53.9 2.0 47 324-375 9-55 (324)
59 KOG1785 Tyrosine kinase negati 93.9 0.031 6.6E-07 55.4 1.9 54 320-378 366-421 (563)
60 KOG4185 Predicted E3 ubiquitin 93.9 0.04 8.7E-07 53.4 2.7 50 321-372 2-54 (296)
61 KOG2979 Protein involved in DN 93.8 0.027 5.9E-07 52.9 1.4 47 322-371 176-222 (262)
62 KOG1645 RING-finger-containing 93.7 0.025 5.3E-07 56.3 0.8 58 323-381 5-64 (463)
63 KOG4159 Predicted E3 ubiquitin 93.4 0.042 9E-07 55.5 2.0 49 319-373 81-129 (398)
64 COG5222 Uncharacterized conser 93.4 0.052 1.1E-06 51.9 2.4 43 323-370 275-318 (427)
65 PF05290 Baculo_IE-1: Baculovi 93.2 0.12 2.6E-06 43.9 3.9 55 321-377 79-136 (140)
66 COG5175 MOT2 Transcriptional r 92.9 0.079 1.7E-06 51.6 2.9 54 324-380 16-71 (480)
67 KOG3800 Predicted E3 ubiquitin 92.8 0.088 1.9E-06 50.3 3.0 53 324-378 2-56 (300)
68 PF14570 zf-RING_4: RING/Ubox 92.4 0.16 3.5E-06 35.6 3.2 47 325-373 1-48 (48)
69 KOG3161 Predicted E3 ubiquitin 91.6 0.066 1.4E-06 56.1 0.7 39 320-358 9-48 (861)
70 PF04710 Pellino: Pellino; In 91.5 0.055 1.2E-06 53.8 0.0 61 322-382 328-411 (416)
71 KOG1002 Nucleotide excision re 91.5 0.13 2.8E-06 52.9 2.6 53 320-375 534-588 (791)
72 KOG3002 Zn finger protein [Gen 90.6 0.16 3.5E-06 49.4 2.3 47 318-373 44-91 (299)
73 KOG0804 Cytoplasmic Zn-finger 89.7 0.15 3.3E-06 51.4 1.3 45 324-373 177-222 (493)
74 KOG1813 Predicted E3 ubiquitin 89.5 0.11 2.5E-06 49.7 0.3 46 323-374 242-287 (313)
75 KOG1940 Zn-finger protein [Gen 89.0 0.25 5.4E-06 47.4 2.2 45 323-370 159-204 (276)
76 KOG1477 SPRY domain-containing 88.9 0.2 4.4E-06 51.8 1.6 166 111-278 253-441 (469)
77 PF10367 Vps39_2: Vacuolar sor 88.9 0.11 2.4E-06 42.1 -0.3 30 323-353 79-108 (109)
78 PF11793 FANCL_C: FANCL C-term 88.2 0.099 2.2E-06 39.7 -0.9 53 323-375 3-68 (70)
79 KOG4367 Predicted Zn-finger pr 88.1 0.28 6.1E-06 49.3 1.9 32 322-356 4-35 (699)
80 KOG0297 TNF receptor-associate 87.5 0.26 5.7E-06 49.9 1.3 49 322-376 21-70 (391)
81 KOG0827 Predicted E3 ubiquitin 86.6 0.55 1.2E-05 46.7 2.9 46 324-369 6-52 (465)
82 KOG3842 Adaptor protein Pellin 86.3 0.47 1E-05 45.9 2.2 32 341-372 376-413 (429)
83 KOG1493 Anaphase-promoting com 85.7 0.52 1.1E-05 36.2 1.7 50 324-375 33-83 (84)
84 smart00531 TFIIE Transcription 85.3 0.52 1.1E-05 41.1 1.9 17 360-376 121-137 (147)
85 PF14353 CpXC: CpXC protein 85.3 0.59 1.3E-05 39.5 2.2 50 323-375 2-51 (128)
86 KOG1039 Predicted E3 ubiquitin 85.2 0.65 1.4E-05 46.1 2.7 54 320-373 159-221 (344)
87 KOG2034 Vacuolar sorting prote 84.1 0.5 1.1E-05 51.6 1.4 36 319-355 814-849 (911)
88 PF04494 TFIID_90kDa: WD40 ass 83.0 2.8 6E-05 36.2 5.5 63 166-228 23-85 (142)
89 PF05605 zf-Di19: Drought indu 81.8 0.53 1.1E-05 33.7 0.4 15 362-376 2-16 (54)
90 PF09538 FYDLN_acid: Protein o 80.7 1.1 2.4E-05 37.1 2.0 14 362-375 26-39 (108)
91 cd00729 rubredoxin_SM Rubredox 80.7 1.2 2.6E-05 28.8 1.7 17 322-338 2-18 (34)
92 KOG2910 Uncharacterized conser 80.2 35 0.00075 31.0 11.3 91 80-213 27-117 (209)
93 KOG2114 Vacuolar assembly/sort 80.2 1.1 2.3E-05 48.9 2.2 42 323-372 841-882 (933)
94 cd08044 TAF5_NTD2 TAF5_NTD2 is 79.9 3.1 6.6E-05 35.5 4.6 63 166-228 12-74 (133)
95 KOG0825 PHD Zn-finger protein 79.1 0.53 1.1E-05 50.7 -0.5 35 341-378 142-176 (1134)
96 KOG1001 Helicase-like transcri 78.4 0.76 1.7E-05 49.7 0.4 50 323-377 455-504 (674)
97 COG5220 TFB3 Cdk activating ki 78.2 1 2.2E-05 42.1 1.1 45 324-371 12-62 (314)
98 PHA02825 LAP/PHD finger-like p 78.1 2.5 5.5E-05 37.2 3.5 49 324-377 10-63 (162)
99 KOG1571 Predicted E3 ubiquitin 77.8 1.2 2.6E-05 44.0 1.5 41 324-373 307-347 (355)
100 PHA02862 5L protein; Provision 77.2 2.6 5.7E-05 36.5 3.2 49 324-377 4-57 (156)
101 PF03966 Trm112p: Trm112p-like 75.3 2.7 5.8E-05 31.5 2.6 16 361-376 52-67 (68)
102 COG4391 Uncharacterized protei 75.2 1.3 2.8E-05 32.6 0.7 16 360-375 46-61 (62)
103 COG5109 Uncharacterized conser 74.4 92 0.002 30.6 14.2 85 88-175 90-185 (396)
104 PF10602 RPN7: 26S proteasome 73.5 57 0.0012 29.1 11.2 106 109-216 37-144 (177)
105 PRK15326 type III secretion sy 72.7 40 0.00088 26.3 8.5 45 25-71 17-61 (80)
106 KOG4265 Predicted E3 ubiquitin 72.7 2.7 5.8E-05 41.6 2.5 47 321-373 289-336 (349)
107 cd00350 rubredoxin_like Rubred 72.0 3.2 6.9E-05 26.6 1.9 10 362-371 17-26 (33)
108 PF13719 zinc_ribbon_5: zinc-r 72.0 2.1 4.5E-05 28.2 1.1 14 360-373 23-36 (37)
109 PF12906 RINGv: RING-variant d 72.0 1.8 3.8E-05 30.2 0.8 42 325-368 1-47 (47)
110 TIGR02300 FYDLN_acid conserved 71.5 2.8 6.1E-05 35.5 2.0 28 322-349 9-38 (129)
111 KOG4172 Predicted E3 ubiquitin 71.2 2.2 4.8E-05 30.7 1.1 43 324-371 9-52 (62)
112 COG5183 SSM4 Protein involved 69.7 3.6 7.9E-05 44.7 2.8 53 323-377 13-70 (1175)
113 KOG3842 Adaptor protein Pellin 69.6 1.7 3.7E-05 42.2 0.4 41 329-372 308-351 (429)
114 cd07654 F-BAR_FCHSD The F-BAR 69.0 39 0.00084 32.4 9.5 104 3-106 101-229 (264)
115 KOG1812 Predicted E3 ubiquitin 68.9 2.9 6.3E-05 42.3 1.9 61 320-380 144-210 (384)
116 PRK11088 rrmA 23S rRNA methylt 68.9 2.5 5.4E-05 40.3 1.4 27 322-348 2-28 (272)
117 cd07656 F-BAR_srGAP The F-BAR 68.7 25 0.00053 33.3 8.0 101 3-103 101-232 (241)
118 PF04710 Pellino: Pellino; In 67.6 1.7 3.8E-05 43.5 0.0 43 332-374 298-340 (416)
119 KOG2169 Zn-finger transcriptio 67.6 3.8 8.1E-05 44.3 2.5 55 322-378 306-361 (636)
120 PF13465 zf-H2C2_2: Zinc-finge 67.4 2 4.4E-05 25.8 0.3 13 361-373 13-25 (26)
121 KOG2660 Locus-specific chromos 67.4 3 6.4E-05 40.8 1.5 53 318-375 11-63 (331)
122 PF14569 zf-UDP: Zinc-binding 67.3 8.6 0.00019 29.7 3.7 54 319-374 6-63 (80)
123 KOG4185 Predicted E3 ubiquitin 66.8 1.4 3.1E-05 42.6 -0.8 45 324-370 209-264 (296)
124 COG1579 Zn-ribbon protein, pos 64.6 4 8.7E-05 38.5 1.8 32 340-372 200-231 (239)
125 cd07653 F-BAR_CIP4-like The F- 64.1 52 0.0011 30.8 9.3 96 4-101 97-208 (251)
126 PF09398 FOP_dimer: FOP N term 63.9 20 0.00043 28.1 5.3 32 107-138 18-49 (81)
127 PF09976 TPR_21: Tetratricopep 62.9 93 0.002 26.2 10.8 94 110-210 50-143 (145)
128 PF13894 zf-C2H2_4: C2H2-type 62.7 2.9 6.2E-05 23.6 0.3 14 363-376 1-14 (24)
129 PF00096 zf-C2H2: Zinc finger, 61.9 2.5 5.3E-05 24.2 -0.1 13 363-375 1-13 (23)
130 PHA02768 hypothetical protein; 61.8 9.5 0.00021 27.6 2.9 38 323-374 6-43 (55)
131 PF10475 DUF2450: Protein of u 61.2 1.6E+02 0.0035 28.4 14.5 32 146-177 127-158 (291)
132 PF04100 Vps53_N: Vps53-like, 61.2 1.3E+02 0.0029 30.4 12.1 25 142-166 158-185 (383)
133 COG5236 Uncharacterized conser 60.3 6.4 0.00014 38.8 2.3 47 323-373 62-108 (493)
134 PF14559 TPR_19: Tetratricopep 59.7 50 0.0011 23.5 6.7 66 157-229 2-67 (68)
135 PRK15179 Vi polysaccharide bio 59.6 2.7E+02 0.0059 30.6 15.3 99 108-215 86-184 (694)
136 PF13717 zinc_ribbon_4: zinc-r 58.8 4.8 0.0001 26.3 0.9 13 360-372 23-35 (36)
137 PF10607 CLTH: CTLH/CRA C-term 58.6 20 0.00042 30.5 4.9 60 113-173 7-67 (145)
138 cd07657 F-BAR_Fes_Fer The F-BA 58.3 79 0.0017 29.7 9.3 35 6-40 99-133 (237)
139 KOG0275 Conserved WD40 repeat- 58.1 84 0.0018 31.1 9.4 93 107-210 7-99 (508)
140 PF13913 zf-C2HC_2: zinc-finge 57.3 3.3 7.1E-05 24.8 -0.1 16 362-377 2-17 (25)
141 PF13824 zf-Mss51: Zinc-finger 57.0 6.9 0.00015 28.3 1.5 13 362-374 14-26 (55)
142 PF09723 Zn-ribbon_8: Zinc rib 57.0 1.3 2.8E-05 30.1 -2.2 25 342-370 10-34 (42)
143 PF13934 ELYS: Nuclear pore co 55.5 1.3E+02 0.0028 28.0 10.2 98 102-215 72-170 (226)
144 KOG4692 Predicted E3 ubiquitin 54.2 8 0.00017 38.3 1.9 58 306-373 410-467 (489)
145 PF06160 EzrA: Septation ring 54.2 3E+02 0.0065 29.3 14.5 55 141-195 252-306 (560)
146 PF15616 TerY-C: TerY-C metal 54.2 6.4 0.00014 33.7 1.1 42 324-377 79-120 (131)
147 PF10058 DUF2296: Predicted in 54.1 6.6 0.00014 28.2 1.0 33 338-370 20-52 (54)
148 TIGR01562 FdhE formate dehydro 54.1 3 6.4E-05 40.9 -1.0 10 362-371 224-233 (305)
149 PF12660 zf-TFIIIC: Putative z 53.9 1.4 3E-05 35.8 -2.9 50 324-373 16-66 (99)
150 cd00730 rubredoxin Rubredoxin; 53.2 3.2 7E-05 29.4 -0.7 10 362-371 34-43 (50)
151 KOG4275 Predicted E3 ubiquitin 53.2 2.4 5.3E-05 40.8 -1.7 40 322-371 300-340 (350)
152 KOG1937 Uncharacterized conser 52.3 2.9E+02 0.0063 28.6 14.1 93 52-171 389-483 (521)
153 PF02591 DUF164: Putative zinc 52.2 11 0.00024 26.9 2.0 30 340-370 25-54 (56)
154 PF04100 Vps53_N: Vps53-like, 51.4 2.7E+02 0.0059 28.1 16.3 21 241-263 264-284 (383)
155 PF14471 DUF4428: Domain of un 51.4 14 0.0003 26.2 2.3 30 324-355 1-30 (51)
156 KOG2148 Exocyst protein Sec3 [ 51.0 3.6E+02 0.0079 29.4 16.6 109 145-267 309-423 (867)
157 PF07035 Mic1: Colon cancer-as 50.4 1.1E+02 0.0023 27.4 8.3 85 107-211 28-115 (167)
158 PF13281 DUF4071: Domain of un 48.2 3.1E+02 0.0067 27.8 12.4 65 107-172 178-252 (374)
159 KOG0883 Cyclophilin type, U bo 48.1 9.4 0.0002 38.3 1.3 61 318-379 97-158 (518)
160 PF13432 TPR_16: Tetratricopep 48.0 94 0.002 21.9 6.5 55 114-172 3-57 (65)
161 COG5194 APC11 Component of SCF 47.9 29 0.00063 27.0 3.7 57 318-377 27-85 (88)
162 KOG2932 E3 ubiquitin ligase in 47.8 7.4 0.00016 37.9 0.6 28 339-371 105-132 (389)
163 KOG1428 Inhibitor of type V ad 47.5 13 0.00029 43.3 2.5 50 324-373 3488-3544(3738)
164 cd07675 F-BAR_FNBP1L The F-BAR 47.4 1.3E+02 0.0029 28.6 9.0 102 8-111 102-220 (252)
165 PF14255 Cys_rich_CPXG: Cystei 46.8 8.2 0.00018 27.6 0.5 12 363-374 1-12 (52)
166 PLN02189 cellulose synthase 46.6 14 0.0003 41.8 2.5 53 319-373 31-87 (1040)
167 PF10276 zf-CHCC: Zinc-finger 46.6 6.3 0.00014 26.6 -0.1 11 362-372 29-39 (40)
168 PF12773 DZR: Double zinc ribb 46.4 19 0.00042 24.8 2.4 41 325-374 1-41 (50)
169 PF01519 DUF16: Protein of unk 45.9 1.7E+02 0.0036 24.0 10.0 23 69-91 78-100 (102)
170 PRK03564 formate dehydrogenase 45.9 5 0.00011 39.4 -0.9 10 362-371 226-235 (309)
171 PRK06266 transcription initiat 45.6 16 0.00034 32.9 2.3 36 320-376 115-150 (178)
172 PLN02436 cellulose synthase A 45.4 17 0.00038 41.2 3.0 55 317-373 31-89 (1094)
173 PF09295 ChAPs: ChAPs (Chs5p-A 45.4 3.5E+02 0.0076 27.6 12.9 118 81-210 138-259 (395)
174 COG1382 GimC Prefoldin, chaper 45.3 1.9E+02 0.004 24.4 8.6 68 26-93 30-112 (119)
175 KOG4739 Uncharacterized protei 45.3 13 0.00028 34.9 1.7 34 323-357 4-37 (233)
176 PF12569 NARP1: NMDA receptor- 45.1 2E+02 0.0042 30.5 10.6 98 103-200 257-366 (517)
177 cd07678 F-BAR_FCHSD1 The F-BAR 44.3 1.5E+02 0.0033 28.4 8.9 106 13-122 110-241 (263)
178 PF04423 Rad50_zn_hook: Rad50 44.2 7.2 0.00016 27.7 -0.1 25 350-377 11-35 (54)
179 KOG0298 DEAD box-containing he 43.7 7.9 0.00017 44.4 0.1 43 323-370 1154-1196(1394)
180 PRK00420 hypothetical protein; 43.6 16 0.00034 30.5 1.8 14 319-332 37-50 (112)
181 COG1592 Rubrerythrin [Energy p 43.4 17 0.00036 32.5 2.0 25 322-346 134-158 (166)
182 TIGR01206 lysW lysine biosynth 43.3 11 0.00024 27.2 0.7 15 362-376 2-16 (54)
183 KOG2462 C2H2-type Zn-finger pr 42.8 17 0.00037 34.8 2.2 57 318-374 182-255 (279)
184 KOG3970 Predicted E3 ubiquitin 42.1 30 0.00065 32.3 3.5 50 324-374 52-106 (299)
185 KOG1161 Protein involved in va 42.1 3.2E+02 0.0068 26.9 10.7 104 5-115 52-162 (310)
186 TIGR02605 CxxC_CxxC_SSSS putat 41.8 4 8.7E-05 28.6 -1.7 25 342-370 10-34 (52)
187 smart00659 RPOLCX RNA polymera 41.5 9.8 0.00021 26.1 0.3 12 362-373 19-30 (44)
188 PF07282 OrfB_Zn_ribbon: Putat 41.4 10 0.00022 28.1 0.3 14 321-334 27-40 (69)
189 cd05804 StaR_like StaR_like; a 41.0 2.4E+02 0.0052 27.1 10.1 99 109-212 115-213 (355)
190 PF14311 DUF4379: Domain of un 41.0 11 0.00023 26.9 0.4 7 362-368 49-55 (55)
191 KOG1333 Uncharacterized conser 40.8 2.6E+02 0.0057 25.8 9.3 100 108-210 6-114 (241)
192 KOG0971 Microtubule-associated 40.5 3.1E+02 0.0067 31.1 11.2 76 150-232 680-765 (1243)
193 KOG3039 Uncharacterized conser 40.4 16 0.00035 34.5 1.6 29 324-355 45-73 (303)
194 PF00627 UBA: UBA/TS-N domain; 40.3 41 0.00088 21.7 3.1 18 152-169 18-37 (37)
195 KOG3993 Transcription factor ( 39.9 5.7 0.00012 40.2 -1.6 38 321-373 266-306 (500)
196 cd00189 TPR Tetratricopeptide 39.8 1.3E+02 0.0028 21.0 7.9 90 113-211 5-94 (100)
197 PF12126 DUF3583: Protein of u 39.7 3.7E+02 0.0081 26.3 12.0 34 11-44 5-38 (324)
198 PRK04098 sec-independent trans 39.7 2.1E+02 0.0046 25.3 8.3 82 3-90 25-113 (158)
199 COG1675 TFA1 Transcription ini 39.2 20 0.00043 32.3 1.9 14 363-376 133-146 (176)
200 KOG1815 Predicted E3 ubiquitin 38.6 33 0.00072 35.4 3.7 58 320-379 68-132 (444)
201 KOG1156 N-terminal acetyltrans 38.4 2.1E+02 0.0046 31.0 9.5 95 112-216 375-469 (700)
202 PF04216 FdhE: Protein involve 37.7 3.7 8E-05 39.8 -3.3 12 362-373 211-222 (290)
203 PF09162 Tap-RNA_bind: Tap, RN 37.7 16 0.00034 29.1 0.9 39 339-382 10-50 (88)
204 PTZ00196 60S ribosomal protein 37.2 79 0.0017 25.6 4.8 42 187-228 50-93 (98)
205 PRK14714 DNA polymerase II lar 36.8 13 0.00029 42.7 0.5 35 198-232 473-515 (1337)
206 PRK00398 rpoP DNA-directed RNA 36.3 16 0.00034 25.0 0.6 15 362-376 21-35 (46)
207 PF03470 zf-XS: XS zinc finger 35.7 16 0.00035 25.0 0.6 7 365-371 1-7 (43)
208 PF07889 DUF1664: Protein of u 35.6 2.2E+02 0.0049 24.1 7.6 57 26-90 50-107 (126)
209 COG3357 Predicted transcriptio 35.5 9.7 0.00021 30.3 -0.6 29 337-372 58-86 (97)
210 PF05276 SH3BP5: SH3 domain-bi 35.4 1.7E+02 0.0038 27.6 7.6 33 4-44 7-39 (239)
211 PF13878 zf-C2H2_3: zinc-finge 35.3 21 0.00045 24.1 1.1 17 361-377 12-28 (41)
212 PF01601 Corona_S2: Coronaviru 35.2 3.2E+02 0.007 29.3 10.2 80 6-92 246-327 (610)
213 PF07191 zinc-ribbons_6: zinc- 35.1 2.4 5.1E-05 32.2 -3.9 40 323-373 2-41 (70)
214 PF05883 Baculo_RING: Baculovi 34.4 35 0.00077 29.3 2.6 43 322-367 26-74 (134)
215 TIGR02105 III_needle type III 34.4 2.1E+02 0.0045 21.8 7.8 45 33-80 19-67 (72)
216 PRK04863 mukB cell division pr 34.4 9.1E+02 0.02 29.2 14.8 67 106-173 1061-1129(1486)
217 TIGR02098 MJ0042_CXXC MJ0042 f 34.3 14 0.00031 24.0 0.2 15 362-376 2-16 (38)
218 PF00412 LIM: LIM domain; Int 34.2 32 0.00069 24.1 2.0 36 317-354 20-56 (58)
219 PF07754 DUF1610: Domain of un 34.0 19 0.00041 21.5 0.6 9 362-370 16-24 (24)
220 PRK11827 hypothetical protein; 33.3 19 0.0004 26.6 0.6 12 321-332 7-18 (60)
221 KOG2462 C2H2-type Zn-finger pr 33.2 31 0.00066 33.2 2.2 49 321-373 160-226 (279)
222 KOG1100 Predicted E3 ubiquitin 33.1 20 0.00043 33.2 0.9 37 325-371 161-198 (207)
223 PF01540 Lipoprotein_7: Adhesi 33.1 3.5E+02 0.0076 26.1 9.1 93 3-95 65-162 (353)
224 COG1996 RPC10 DNA-directed RNA 33.0 18 0.00038 25.6 0.5 12 362-373 24-35 (49)
225 PF04420 CHD5: CHD5-like prote 32.8 2.4E+02 0.0052 24.8 7.8 42 22-63 36-77 (161)
226 PF13838 Clathrin_H_link: Clat 32.7 54 0.0012 24.6 3.0 25 186-210 7-31 (66)
227 smart00668 CTLH C-terminal to 32.6 62 0.0013 22.5 3.3 28 188-215 4-31 (58)
228 KOG0547 Translocase of outer m 32.6 6.3E+02 0.014 26.8 12.7 93 69-171 470-562 (606)
229 cd00194 UBA Ubiquitin Associat 32.5 62 0.0013 20.7 3.0 20 151-170 16-37 (38)
230 KOG1920 IkappaB kinase complex 32.3 8.8E+02 0.019 28.4 17.1 55 107-173 938-992 (1265)
231 PF01158 Ribosomal_L36e: Ribos 32.0 1E+02 0.0022 25.1 4.7 45 185-229 48-94 (98)
232 PF09986 DUF2225: Uncharacteri 31.8 13 0.00029 34.4 -0.4 58 319-378 2-64 (214)
233 PF03310 Cauli_DNA-bind: Cauli 31.8 3.2E+02 0.0068 23.1 8.0 18 66-83 50-69 (121)
234 COG3364 Zn-ribbon containing p 31.7 23 0.00049 28.9 0.9 27 337-370 2-28 (112)
235 TIGR02552 LcrH_SycD type III s 31.3 2E+02 0.0043 23.2 6.8 59 110-172 53-111 (135)
236 PF07729 FCD: FCD domain; Int 31.3 88 0.0019 24.6 4.5 32 141-172 91-122 (125)
237 PF12895 Apc3: Anaphase-promot 31.1 2.2E+02 0.0049 21.2 6.9 50 155-210 34-83 (84)
238 KOG2659 LisH motif-containing 30.9 1.9E+02 0.0042 27.1 7.0 63 111-173 67-130 (228)
239 PF04641 Rtf2: Rtf2 RING-finge 30.9 49 0.0011 31.5 3.3 42 314-358 26-68 (260)
240 COG3937 Uncharacterized conser 30.4 2.7E+02 0.0059 23.0 6.9 41 4-44 24-64 (108)
241 PF00301 Rubredoxin: Rubredoxi 30.4 7.1 0.00015 27.3 -1.9 10 362-371 34-43 (47)
242 COG5219 Uncharacterized conser 29.9 40 0.00086 37.9 2.6 55 319-374 1466-1524(1525)
243 KOG4603 TBP-1 interacting prot 29.6 4.2E+02 0.0091 23.9 8.5 106 26-137 82-200 (201)
244 COG0675 Transposase and inacti 29.5 27 0.00059 33.6 1.3 39 278-330 279-317 (364)
245 PHA02607 wac fibritin; Provisi 29.3 3.9E+02 0.0085 27.7 9.4 67 5-78 49-115 (454)
246 COG3883 Uncharacterized protei 29.3 3.7E+02 0.008 25.9 8.7 97 2-117 53-157 (265)
247 PLN03086 PRLI-interacting fact 29.2 53 0.0012 35.0 3.4 49 323-372 454-514 (567)
248 PF04840 Vps16_C: Vps16, C-ter 29.2 5.6E+02 0.012 25.2 16.4 156 21-210 104-262 (319)
249 PF06103 DUF948: Bacterial pro 28.9 2.7E+02 0.0057 21.6 6.7 7 81-87 77-83 (90)
250 TIGR02338 gimC_beta prefoldin, 28.9 3.2E+02 0.0069 22.2 10.8 20 26-45 27-46 (110)
251 PF04065 Not3: Not1 N-terminal 28.9 4.8E+02 0.01 24.6 9.4 17 1-17 1-17 (233)
252 smart00165 UBA Ubiquitin assoc 28.9 70 0.0015 20.3 2.8 18 152-169 17-36 (37)
253 KOG2846 Predicted membrane pro 28.7 13 0.00028 36.6 -1.1 60 309-371 192-251 (328)
254 PF03604 DNA_RNApol_7kD: DNA d 28.3 17 0.00037 23.2 -0.3 11 362-372 17-27 (32)
255 smart00355 ZnF_C2H2 zinc finge 28.2 29 0.00063 19.3 0.8 13 363-375 1-13 (26)
256 KOG4362 Transcriptional regula 28.2 20 0.00044 38.7 0.1 49 322-373 21-69 (684)
257 COG1571 Predicted DNA-binding 28.0 37 0.00081 34.7 2.0 17 362-378 367-383 (421)
258 PF02520 DUF148: Domain of unk 27.7 2.8E+02 0.0061 22.5 7.0 7 10-16 25-31 (113)
259 PF12756 zf-C2H2_2: C2H2 type 27.6 25 0.00054 27.2 0.6 13 362-374 50-62 (100)
260 PF10122 Mu-like_Com: Mu-like 27.3 29 0.00062 24.7 0.7 15 362-376 24-38 (51)
261 PF13371 TPR_9: Tetratricopept 27.2 2.3E+02 0.005 20.2 5.8 51 157-212 6-56 (73)
262 COG4842 Uncharacterized protei 27.2 3.2E+02 0.007 21.7 8.5 35 8-42 10-44 (97)
263 PF03233 Cauli_AT: Aphid trans 27.1 4.5E+02 0.0097 23.4 8.7 70 8-86 87-156 (163)
264 KOG1829 Uncharacterized conser 27.0 25 0.00055 37.4 0.6 42 322-371 511-559 (580)
265 PLN02195 cellulose synthase A 26.7 50 0.0011 37.3 2.8 49 323-373 7-59 (977)
266 KOG2678 Predicted membrane pro 26.4 4.9E+02 0.011 24.4 8.6 60 23-92 137-196 (244)
267 cd07664 BAR_SNX2 The Bin/Amphi 26.3 5.5E+02 0.012 24.1 13.7 43 51-93 28-71 (234)
268 COG4049 Uncharacterized protei 26.2 20 0.00043 26.0 -0.2 13 362-374 17-29 (65)
269 PF05180 zf-DNL: DNL zinc fing 26.2 18 0.0004 27.1 -0.4 41 322-377 4-44 (66)
270 KOG2068 MOT2 transcription fac 26.2 63 0.0014 31.9 3.1 48 323-373 250-298 (327)
271 COG0497 RecN ATPase involved i 26.2 2.8E+02 0.0061 29.6 8.0 16 4-19 208-223 (557)
272 PF10498 IFT57: Intra-flagella 26.1 3.4E+02 0.0075 27.2 8.4 14 6-19 196-209 (359)
273 cd02673 Peptidase_C19Q A subfa 26.1 75 0.0016 29.9 3.6 56 316-371 75-135 (245)
274 PF08651 DASH_Duo1: DASH compl 26.0 3.1E+02 0.0067 21.2 7.9 32 5-44 2-33 (78)
275 KOG3060 Uncharacterized conser 26.0 6.1E+02 0.013 24.5 10.6 96 109-216 53-151 (289)
276 PF06794 UPF0270: Uncharacteri 26.0 1.5E+02 0.0033 22.5 4.5 45 104-162 7-51 (70)
277 PF07464 ApoLp-III: Apolipopho 25.9 1E+02 0.0022 27.2 4.1 25 20-44 57-81 (155)
278 PF01920 Prefoldin_2: Prefoldi 25.6 3.3E+02 0.0072 21.3 11.1 68 26-93 22-104 (106)
279 PF12569 NARP1: NMDA receptor- 25.4 1.9E+02 0.0041 30.5 6.7 60 110-173 196-255 (517)
280 PRK04654 sec-independent trans 25.3 4.8E+02 0.01 24.3 8.4 30 3-32 25-54 (214)
281 PF08274 PhnA_Zn_Ribbon: PhnA 25.2 28 0.0006 22.0 0.3 14 363-376 3-16 (30)
282 PRK04966 hypothetical protein; 25.2 1.6E+02 0.0036 22.5 4.5 44 105-162 8-51 (72)
283 PF09748 Med10: Transcription 25.1 4.2E+02 0.0091 22.3 7.7 30 105-134 81-110 (128)
284 PF06705 SF-assemblin: SF-asse 25.1 5.7E+02 0.012 23.9 9.7 66 26-91 175-241 (247)
285 PRK04023 DNA polymerase II lar 25.1 47 0.001 37.6 2.2 35 199-233 449-491 (1121)
286 KOG4451 Uncharacterized conser 25.0 26 0.00057 32.7 0.3 47 312-378 231-279 (286)
287 PRK08270 anaerobic ribonucleos 25.0 43 0.00092 36.5 1.9 24 336-371 623-648 (656)
288 TIGR02795 tol_pal_ybgF tol-pal 24.9 3.2E+02 0.007 21.0 8.7 100 113-215 7-106 (119)
289 KOG1842 FYVE finger-containing 24.8 31 0.00068 35.3 0.8 37 320-356 178-215 (505)
290 cd07676 F-BAR_FBP17 The F-BAR 24.8 5.3E+02 0.011 24.4 9.1 49 51-101 162-210 (253)
291 PF04011 LemA: LemA family; I 24.8 5E+02 0.011 23.1 9.4 67 26-95 88-158 (186)
292 PF13395 HNH_4: HNH endonuclea 24.8 36 0.00078 24.1 0.9 13 365-377 1-13 (54)
293 KOG0972 Huntingtin interacting 24.7 3.8E+02 0.0082 26.2 7.9 15 66-80 260-274 (384)
294 PF14712 Snapin_Pallidin: Snap 24.7 3.3E+02 0.0072 21.0 7.5 17 24-40 33-49 (92)
295 TIGR03185 DNA_S_dndD DNA sulfu 24.3 5.5E+02 0.012 27.8 10.3 22 23-44 395-416 (650)
296 KOG0259 Tyrosine aminotransfer 24.3 45 0.00098 33.7 1.8 16 342-357 211-226 (447)
297 KOG0994 Extracellular matrix g 24.1 3.5E+02 0.0076 31.6 8.5 87 143-231 1424-1521(1758)
298 PF04124 Dor1: Dor1-like famil 24.0 6.9E+02 0.015 24.5 12.7 18 115-132 113-130 (338)
299 PRK11546 zraP zinc resistance 24.0 4.8E+02 0.01 22.7 8.9 57 25-83 60-118 (143)
300 PHA03096 p28-like protein; Pro 24.0 56 0.0012 31.7 2.3 52 323-374 179-235 (284)
301 TIGR00100 hypA hydrogenase nic 23.8 49 0.0011 27.5 1.6 10 362-371 86-95 (115)
302 PF08271 TF_Zn_Ribbon: TFIIB z 23.5 41 0.00089 22.6 0.9 10 363-372 1-10 (43)
303 PRK14890 putative Zn-ribbon RN 23.3 74 0.0016 23.4 2.2 10 362-371 48-57 (59)
304 PF13934 ELYS: Nuclear pore co 23.3 4.8E+02 0.01 24.2 8.4 57 114-176 114-170 (226)
305 KOG2150 CCR4-NOT transcription 23.2 3E+02 0.0066 29.3 7.5 16 2-17 2-17 (575)
306 PLN02638 cellulose synthase A 23.0 67 0.0015 36.7 2.9 54 318-373 13-70 (1079)
307 KOG2114 Vacuolar assembly/sort 23.0 5.6E+02 0.012 28.8 9.6 33 106-138 366-399 (933)
308 PLN03088 SGT1, suppressor of 23.0 4.7E+02 0.01 25.9 8.8 91 114-213 8-98 (356)
309 PF10498 IFT57: Intra-flagella 22.9 5.9E+02 0.013 25.6 9.4 17 26-42 241-257 (359)
310 PF13909 zf-H2C2_5: C2H2-type 22.5 36 0.00078 19.5 0.4 11 363-373 1-11 (24)
311 PF13240 zinc_ribbon_2: zinc-r 22.3 52 0.0011 19.2 1.1 11 364-374 1-11 (23)
312 PF08181 DegQ: DegQ (SacQ) fam 22.2 1.9E+02 0.004 19.6 3.7 23 68-90 14-36 (46)
313 cd00632 Prefoldin_beta Prefold 22.2 4.1E+02 0.009 21.2 11.0 64 26-89 23-101 (105)
314 PLN02915 cellulose synthase A 22.2 73 0.0016 36.3 3.0 52 320-373 13-68 (1044)
315 KOG3616 Selective LIM binding 22.1 4.3E+02 0.0093 29.5 8.4 123 75-207 1253-1382(1636)
316 PF02346 Vac_Fusion: Chordopox 22.1 2.9E+02 0.0062 20.2 5.1 42 1-42 1-45 (57)
317 PF06221 zf-C2HC5: Putative zi 21.9 44 0.00094 24.4 0.8 29 338-374 19-47 (57)
318 KOG4594 Sequence-specific sing 21.7 97 0.0021 30.1 3.3 31 106-136 16-46 (354)
319 PRK03824 hypA hydrogenase nick 21.6 27 0.00058 30.0 -0.4 13 322-334 70-82 (135)
320 PF10571 UPF0547: Uncharacteri 21.5 38 0.00083 20.5 0.4 8 325-332 3-10 (26)
321 KOG0412 Golgi transport comple 21.3 1.1E+03 0.024 26.0 16.9 29 187-216 195-223 (773)
322 COG2178 Predicted RNA-binding 21.2 6.6E+02 0.014 23.2 13.3 99 66-170 44-145 (204)
323 PLN02372 violaxanthin de-epoxi 21.2 6.1E+02 0.013 26.1 8.9 27 69-95 425-451 (455)
324 PF04136 Sec34: Sec34-like fam 21.1 5.6E+02 0.012 22.3 14.4 41 161-213 103-143 (157)
325 cd07627 BAR_Vps5p The Bin/Amph 20.8 6.5E+02 0.014 23.0 12.4 42 51-92 10-52 (216)
326 PF09763 Sec3_C: Exocyst compl 20.7 1.1E+03 0.024 25.6 13.1 20 246-265 225-244 (701)
327 PF06676 DUF1178: Protein of u 20.5 86 0.0019 27.4 2.5 23 348-372 20-42 (148)
328 COG1777 Predicted transcriptio 20.0 7.1E+02 0.015 23.1 8.8 24 107-130 164-187 (217)
329 PF14276 DUF4363: Domain of un 20.0 1.8E+02 0.004 23.8 4.4 47 148-194 30-76 (121)
No 1
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-93 Score=687.99 Aligned_cols=381 Identities=47% Similarity=0.857 Sum_probs=357.6
Q ss_pred CCch--HHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHhhhhhhhhHhh
Q 016792 1 MELN--DIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHL-----DDKYVLTELKRRLQDIAPLGQLEGT 73 (382)
Q Consensus 1 ~~~~--~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~~~~~~~~~~ 73 (382)
||+. ++++|++||.+||+.+.+.+++.++.+++.+.++...++..... +....+....+++...++.+++.++
T Consensus 1 M~~~~~sv~~~~~rv~~k~~~~~~~~~~~~~~ll~~~~~~l~~~~~~~~~~~~l~~~~s~~~~~~e~~~~~~~~~~l~~~ 80 (394)
T KOG2817|consen 1 MDLKCSSVEDEFDRVDSKQKLYYSNLRDELESLLDDIKKLLSKDNSTISQDLPLSDHESEVVETKEKLRAIQPDTKLAST 80 (394)
T ss_pred CCchhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHhhcchHHHHHH
Confidence 6765 99999999999999999999999999999999999999874211 2456677777888877889999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHhhhcc-ccCCHHH-HHHHHHHHHHHhCcHHHHHHHHHHhCCCcch-hhhHHHHHHH
Q 016792 74 QKELNIALSKYTKILEKSFNPDISKAYRN-IEFDTHT-VSQIIASHFYRQGLFEVGDCFISETKESECS-AAILSIFEDM 150 (382)
Q Consensus 74 ~k~~~~~~~k~~k~idk~f~~~l~~~~~~-~~~~~~~-lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~-~~~~~~f~~~ 150 (382)
||++|.+++|+||+|||.|++||+.++++ +.++... +|.+|+.||+|+|++|+|+.|++|+|... + ......|.+|
T Consensus 81 ~K~~h~s~sk~~K~ldk~~~~di~~~~~~~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~-~~~~~~~~F~el 159 (394)
T KOG2817|consen 81 HKDLHGSLSKFGKALDKNFNPDISSVYRNSVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSE-DESKSRTEFVEL 159 (394)
T ss_pred HHHHHHHHHHHHHHHhhccCcchhhHhhcCcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCC-cchhhhhhHHHH
Confidence 99999999999999999999999999984 6666544 59999999999999999999999999986 4 5678899999
Q ss_pred HHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHH--HHHHHHHHhcCCchhhhHHHHHHHHH
Q 016792 151 YQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSRE--EALKYARANLAPFASNHVNEIQKLMA 228 (382)
Q Consensus 151 ~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~--eAl~yar~~l~~f~~~~~~eiq~lm~ 228 (382)
++|+++|+.||++||++|+..|+..|.+.+|+|||.||+++|+++++.|... +||.|||+||+||+.+|..|||.+|+
T Consensus 160 ~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 160 NQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999765 99999999999999999999999999
Q ss_pred hHcccCC-CCCCCchhhcccCChHHHHHHHHHHHHHHhCCCCCChHHHHHHhhhccccchhhhhhhhccccccccccCCC
Q 016792 229 CLIWARK-LESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQL 307 (382)
Q Consensus 229 ~L~f~~~-~~~spy~~Ll~~~~w~~l~~~F~~e~c~l~gls~~spL~~~~~aG~~aLpt~~k~~~~~~~~~~~~~~~~eL 307 (382)
+|+|..+ ++.|||.+++++..|.++.+.|+++||+++|+|.+|||.+++.||++|||++++|.+||..+.++|++.+||
T Consensus 240 sl~~l~~gl~~spy~~~ls~~~w~~~~~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~~~~~W~~~deL 319 (394)
T KOG2817|consen 240 SLLYLRNGLEKSPYSEILSPKLWKELTEEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMELKHGEWNTKDEL 319 (394)
T ss_pred HHHHHHcCCCCCChHHHhCHHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHHhccCccccccC
Confidence 9999865 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCcccccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccccC
Q 016792 308 PVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF 382 (382)
Q Consensus 308 p~~i~Lp~~~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~f 382 (382)
|+||+||++++|||+|+|||+++|++++||||+|+||||||+++|++|++++..+|||||||.+..+++++||||
T Consensus 320 PveIeL~~~~~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 320 PVEIELGKEYHFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred ccceeccccccccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 999999999999999999999999999999999999999999999999998865699999999999999999998
No 2
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.7e-63 Score=472.65 Aligned_cols=367 Identities=19% Similarity=0.349 Sum_probs=328.7
Q ss_pred HHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhc-CCCC---hHHHHHHHHHHHHhhhhhh-hhHhhHHHHHH
Q 016792 5 DIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSA-SHLD---DKYVLTELKRRLQDIAPLG-QLEGTQKELNI 79 (382)
Q Consensus 5 ~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~-~~~~---~~~~l~~l~~~~~~~~~~~-~~~~~~k~~~~ 79 (382)
..+-+++-+.|+++. .|++||+.++++..+.+.++.. .+.+ -.+++..+...|.++..++ +++..++.+..
T Consensus 11 l~ripye~l~kr~r~----~qk~i~re~~~v~~~~~~l~~~~~sn~~~~~d~~~~~id~Li~kv~~~krk~e~~iq~e~~ 86 (389)
T KOG0396|consen 11 LFRIPYELLNKRIRH----NQKVIDRETSHVLMVVAELQETLISNIVPHLDSTVSLIDRLIRKVQCLKRKLEEYIQSEEE 86 (389)
T ss_pred hhcCCHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888877 8999999999999999999874 1112 4678888888888887777 99999999999
Q ss_pred HHHHHHHHHhhcCCCChHhh--hccccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHH
Q 016792 80 ALSKYTKILEKSFNPDISKA--YRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAM 157 (382)
Q Consensus 80 ~~~k~~k~idk~f~~~l~~~--~~~~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L 157 (382)
.+.+++++||..-. ++... .....|.+..++|+|++||+|+|||++|..|.+++++++ ..|.+.|.+++.|.++|
T Consensus 87 ~~~~iksRid~m~e-~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~led--lvD~Dv~~~~~~I~~sl 163 (389)
T KOG0396|consen 87 QLKRIKSRIDFMHE-EISSDTPANSRKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLED--LVDSDVYKRAYGIRDSL 163 (389)
T ss_pred HHHHHHHHHHHHHH-HhcccCchHHHHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhh--hHhHHHHHHHHHHHHHH
Confidence 99999999995432 33221 224689999999999999999999999999999999987 99999999999999999
Q ss_pred HcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhcCCchhhhHHHHHHHHHhHcccCCCC
Q 016792 158 KSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLE 237 (382)
Q Consensus 158 ~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~~~~~~eiq~lm~~L~f~~~~~ 237 (382)
++|++.|||.||++|+..|++.+|.|||.+|.|+|||||+.+++.+||+|||+||+|++.+|.++++.+||+|+|...+.
T Consensus 164 l~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~ 243 (389)
T KOG0396|consen 164 LAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS 243 (389)
T ss_pred HhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCchhhcccCChHHHHHHHHHHHHHHhCCCCCChHHHHHHhhhccccchhhhhhhhcccc----ccccccCCCCccccC
Q 016792 238 SCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKK----QEWQSMKQLPVPVEL 313 (382)
Q Consensus 238 ~spy~~Ll~~~~w~~l~~~F~~e~c~l~gls~~spL~~~~~aG~~aLpt~~k~~~~~~~~~----~~~~~~~eLp~~i~L 313 (382)
.++|..++++.||+.|++.|..+||+++|+|.+++|.+.+++|++|++|+.|+..-....+ +|..+.. |++-+|
T Consensus 244 ~sky~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~GLsalKTp~c~~~~~~~~~~~CpvC~~~f~--~ia~~L 321 (389)
T KOG0396|consen 244 SSKYLNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQAGLSALKTPRCLNDESDNNPNNCPVCCEAFK--PIAQAL 321 (389)
T ss_pred cccccCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHhhhhhcccccccccccCCCCCCCCCcccccc--hhhhcC
Confidence 8999999999999999999999999999999999999999999999999999987543322 3333333 455689
Q ss_pred CcccccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccccC
Q 016792 314 DKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF 382 (382)
Q Consensus 314 p~~~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~f 382 (382)
|++|+.||+++|.++|+.|+++|||+++|+||||+.++|..|..+++ +.||+.++.+..+++.+||.
T Consensus 322 Pfah~~~S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~--i~dP~~~k~f~~~~l~kvy~ 388 (389)
T KOG0396|consen 322 PFAHHAQSRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDG--IGDPRTKKVFRYSELCKVYL 388 (389)
T ss_pred CchhhhhhHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCC--CcCCCCCccccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999987763 89999999999999999874
No 3
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=100.00 E-value=1.7e-55 Score=409.37 Aligned_cols=355 Identities=20% Similarity=0.334 Sum_probs=302.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHh--hhhhhhhHhhHHHHHHHHHHHHHHHhhcCCCChHh
Q 016792 21 CSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQD--IAPLGQLEGTQKELNIALSKYTKILEKSFNPDISK 98 (382)
Q Consensus 21 ~~~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~~~k~~~~~~~k~~k~idk~f~~~l~~ 98 (382)
..|+.+....+-+.+..++..+.. ++...+.++-+.+.. -..++++....++|+.++++++|.+.+.++.|.+.
T Consensus 14 lqKCLdhthe~~S~lk~~k~~l~k----~~~~s~~ei~~alS~k~~q~fd~Ls~~e~~~~~s~k~~~k~~~~~~nFd~~~ 89 (396)
T COG5109 14 LQKCLDHTHEVDSKLKIDKRRLRK----ETMRSIDEIRSALSLKNGQEFDTLSHAEADLVGSWKSLLKEDCRPANFDVQV 89 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hHhhhHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCCHHH
Confidence 455666666666777777777766 444455555554432 24677999999999999999999999999988875
Q ss_pred hhc--cccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHh
Q 016792 99 AYR--NIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKL 176 (382)
Q Consensus 99 ~~~--~~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L 176 (382)
... +++.+...++.+.-.|+.+.|...-+-.+..+.|.+. .....+.|..+..|.+.|++.++..-|+|+ +-...|
T Consensus 90 ~n~~~~f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e-~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl 167 (396)
T COG5109 90 GNQIYPFSTQTVTYLVVYYLLENNCADVVERHISETKDGKDE-IIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYL 167 (396)
T ss_pred HhhcCCCccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccc-hhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCcc
Confidence 544 4555667788888889999998888899999999987 567889999999999999999999999999 666788
Q ss_pred hhcCCchhhhchHHH--HHHHHHcCCHHHHHHHHHHhcCCchhhhHHHHHHHHHhHcccCCC------C-----------
Q 016792 177 TQNGSDLQLKLHSLQ--FVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKL------E----------- 237 (382)
Q Consensus 177 ~~~~s~LeF~L~~q~--fIeLl~~~~~~eAl~yar~~l~~f~~~~~~eiq~lm~~L~f~~~~------~----------- 237 (382)
.+.++.+|++|+.-. ++-++.. ++++|+.|.++.++.|.++|..+|+.+|-.|.+.+.. .
T Consensus 168 ~kgdtesel~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ 246 (396)
T COG5109 168 SKGDTESELELYLVSHESLLLIHK-RYDEALRLCFTKLASFVPKHIQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALK 246 (396)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHH
Confidence 888877776666554 4444444 7899999999999999999999999999999996431 0
Q ss_pred ----CCCchhh-cccCChHHHHHHHHHHHHHHhCCCCCChHHHHHHhhhccccchhhhhhhhccccccccccCCCCcccc
Q 016792 238 ----SCPYPQL-VSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVE 312 (382)
Q Consensus 238 ----~spy~~L-l~~~~w~~l~~~F~~e~c~l~gls~~spL~~~~~aG~~aLpt~~k~~~~~~~~~~~~~~~~eLp~~i~ 312 (382)
.-|-.++ --+..|.++...|.++||+..|+|.+|||...+.+|.+|+|.++|+.++|..++++|++.+|||+||.
T Consensus 247 ksligqPiEdIDkvnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf~~l~k~~si~~~kHvdWT~~~eLP~eIk 326 (396)
T COG5109 247 KSLIGQPIEDIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAFLQLSKSGSILFDKHVDWTDDSELPMEIK 326 (396)
T ss_pred HhhcCCcHHHHHHhhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHHHHHHHhhhHHHhhccCccCCCCCceEEe
Confidence 0121111 12468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccccC
Q 016792 313 LDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF 382 (382)
Q Consensus 313 Lp~~~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~f 382 (382)
||..+||||+|+|||++|+.+++||||||.|||||++++|..|+++|.-+|||||||.+..++++.||+|
T Consensus 327 lp~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 327 LPKGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred cCCcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 9999999999999999999999999999999999999999999999877899999999999999999998
No 4
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=99.97 E-value=9.5e-32 Score=233.87 Aligned_cols=142 Identities=35% Similarity=0.627 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhcCCchhhhHHHHHHH
Q 016792 147 FEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKL 226 (382)
Q Consensus 147 f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~~~~~~eiq~l 226 (382)
|.++++|+++|++||+++|++|+++|++.|.+.+++|+|.|++|+||+||++|+..+||+|||++|.++...+.++++++
T Consensus 2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~ 81 (145)
T PF10607_consen 2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKL 81 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999988777799999999
Q ss_pred HHhHcccCCCC--CCCchhhcccCChHHHHHHHHHHHHHHhCCCCCChHHHHHHhhhccccchh
Q 016792 227 MACLIWARKLE--SCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGVQALPPLL 288 (382)
Q Consensus 227 m~~L~f~~~~~--~spy~~Ll~~~~w~~l~~~F~~e~c~l~gls~~spL~~~~~aG~~aLpt~~ 288 (382)
||+|+|.+... .+||++++++.+|+.+++.|++++|..+|+|.+|||.+++.+|.+|+||++
T Consensus 82 ~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l~ 145 (145)
T PF10607_consen 82 MSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTLM 145 (145)
T ss_pred HHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhcC
Confidence 99999986544 489999999999999999999999999999999999999999999999974
No 5
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.92 E-value=2.7e-24 Score=196.34 Aligned_cols=178 Identities=22% Similarity=0.384 Sum_probs=165.2
Q ss_pred cccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCC
Q 016792 102 NIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGS 181 (382)
Q Consensus 102 ~~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s 181 (382)
.+...+..+|++|.+||+.+||.|+|+.|++|+|+.. +..+.+...++.+|+.+|..|+++.||+.+++..|.+...+.
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~-~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKP-PSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCC-ccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 4667788999999999999999999999999999987 577888999999999999999999999999999999999999
Q ss_pred chhhhchHHHHHHHHHcCCHHHHHHHHHHhcCCchhh---hHHHHHHHHHhHcccCCCCCCCchhhcccCChHHHHHHHH
Q 016792 182 DLQLKLHSLQFVEILRKGSREEALKYARANLAPFASN---HVNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELT 258 (382)
Q Consensus 182 ~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~~~---~~~eiq~lm~~L~f~~~~~~spy~~Ll~~~~w~~l~~~F~ 258 (382)
.|.|.|++|+||||||+|...+||+|||++++|++.. ++.+++++|++|+|. ..+.+|+..++..++|.++|+.++
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~-~~~~sp~~~l~~~s~R~kvA~~vN 178 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFE-LSQESPSAELLSQSLRQKVASEVN 178 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcC-CcccCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999865 788999999999998 677899999999999999999999
Q ss_pred HHHHHHhCCCCCChHHHHHHhhh
Q 016792 259 RQFCNLVGQSYESPLSVTIAAGV 281 (382)
Q Consensus 259 ~e~c~l~gls~~spL~~~~~aG~ 281 (382)
+.....+|...+++|.-.+..+.
T Consensus 179 ~aiL~~~~~~~~~~l~~llk~~~ 201 (228)
T KOG2659|consen 179 SAILASQEHESEPKLPFLLKLIS 201 (228)
T ss_pred HHHHHHhcccccchHHHHHHHHH
Confidence 99999999998888877774443
No 6
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=99.69 E-value=4.2e-17 Score=132.46 Aligned_cols=92 Identities=43% Similarity=0.638 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHhcCCchhhh---HHHHHHHHHhHcccCCCCCCCchhhcccCChHHHHHHHHHHHHHHh-CCCCCChHHH
Q 016792 200 SREEALKYARANLAPFASNH---VNEIQKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLV-GQSYESPLSV 275 (382)
Q Consensus 200 ~~~eAl~yar~~l~~f~~~~---~~eiq~lm~~L~f~~~~~~spy~~Ll~~~~w~~l~~~F~~e~c~l~-gls~~spL~~ 275 (382)
+..+||+|||++|++|..++ +++|+++||+|+|....+.+||++++++++|+.+++.|++++|.++ |.+.+|||.+
T Consensus 2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~ 81 (99)
T smart00757 2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI 81 (99)
T ss_pred cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence 57899999999999999877 8899999999999865478999999999999999999999999998 9999999999
Q ss_pred HHHhhhccccchhhhh
Q 016792 276 TIAAGVQALPPLLKFM 291 (382)
Q Consensus 276 ~~~aG~~aLpt~~k~~ 291 (382)
.+++|..+++++.|+.
T Consensus 82 ~~~~~~~~~~~l~~~~ 97 (99)
T smart00757 82 LLSAGLAALKTLLEKG 97 (99)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998875
No 7
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.59 E-value=5.3e-16 Score=106.55 Aligned_cols=42 Identities=48% Similarity=1.220 Sum_probs=27.7
Q ss_pred ccccccccCCCCCCeeccCchhhhHHHHHHHHhcC-CCccccC
Q 016792 325 CPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNH-SRTFKCP 366 (382)
Q Consensus 325 Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~-~~~~kCP 366 (382)
||||+|+.+++||||+||||||||++||++|++++ .++||||
T Consensus 1 CpIc~e~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 99999988899999999999999999999999875 3689998
No 8
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=99.27 E-value=8e-12 Score=91.33 Aligned_cols=55 Identities=27% Similarity=0.562 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCH
Q 016792 147 FEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSR 201 (382)
Q Consensus 147 f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~ 201 (382)
|.++.+|+++|+.|||++|++|++++.+.+.+.+|.++|.||+|+|+||++.|+.
T Consensus 2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 6789999999999999999999999999999999999999999999999998864
No 9
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.05 E-value=1.2e-10 Score=86.51 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=46.3
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccc
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQL 380 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v 380 (382)
|+||||++.+++ ||++||||||+++++.++.++ ..+||+|++.++.++++..
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~---~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 2 FLCPISLEVMKD---PVILPSGQTYERRAIEKWLLS---HGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred cCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHH---CCCCCCCcCCCChhhceeC
Confidence 789999999976 899999999999999999876 3589999999988887654
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.84 E-value=1.7e-09 Score=74.11 Aligned_cols=41 Identities=37% Similarity=0.997 Sum_probs=32.1
Q ss_pred ccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCc-cccCCC
Q 016792 325 CPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRT-FKCPYC 368 (382)
Q Consensus 325 Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~-~kCP~c 368 (382)
|||+.+.+++ ||+|+|||+|++.+|.++.+...+. +.||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999988 9999999999999999998875433 899987
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.75 E-value=5.7e-09 Score=80.30 Aligned_cols=52 Identities=23% Similarity=0.495 Sum_probs=41.9
Q ss_pred ceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccc
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~ 378 (382)
.|.||||++.|.+ ||.+|+||+|++.+|.++.+.+ ...||.|+...+.+++.
T Consensus 4 ~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~--~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILPSGHTYERSAIERWLEQN--GGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTT--SSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcC--CCCCCCCCCcCCcccce
Confidence 6899999999998 9999999999999999998773 47999999988887764
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.65 E-value=2.3e-08 Score=89.92 Aligned_cols=58 Identities=33% Similarity=0.714 Sum_probs=48.9
Q ss_pred cceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcC-------------CCccccCCCCCcCCcccccccc
Q 016792 321 SIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNH-------------SRTFKCPYCPSDIDAAQCRQLY 381 (382)
Q Consensus 321 S~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~-------------~~~~kCP~c~~~~~~~~~~~v~ 381 (382)
..|.||||.+..++ |++.+|||+||..||.+|.... .+..+||.|+..++..++..||
T Consensus 17 ~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 46899999998865 9999999999999999985421 1357999999999999888776
No 13
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.64 E-value=2.8e-08 Score=68.79 Aligned_cols=43 Identities=33% Similarity=0.933 Sum_probs=38.5
Q ss_pred ccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 325 CPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 325 Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
||||.+.++++.+|++++|||+|+.+++.++. +..++||.|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~---~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK---GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc---CCCCCCcCCCC
Confidence 89999999878899999999999999999998 23689999974
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.6e-08 Score=85.50 Aligned_cols=59 Identities=34% Similarity=0.777 Sum_probs=52.0
Q ss_pred ccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccccC
Q 016792 320 HSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF 382 (382)
Q Consensus 320 hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~f 382 (382)
-+.+-||||.+-.++.- |+.-.||||||++|++...++. .+||.|++..+..+.-+||+
T Consensus 129 ~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~---~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNT---NKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhC---CCCCCcccccchhhheeccC
Confidence 36799999999887654 6889999999999999998874 69999999999999999985
No 15
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.48 E-value=7.3e-08 Score=92.00 Aligned_cols=58 Identities=21% Similarity=0.555 Sum_probs=49.6
Q ss_pred cccceeccccccccCCCCCCeec-cCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccc
Q 016792 319 FHSIFVCPVSKEQTSDDNPPMIM-SCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQL 380 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~~~~Npp~~l-~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v 380 (382)
-++.|+|||++..|+..-+.+.| |||||||.++|+.+. . .-.||.|++.|...|+..|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~---~~~Cp~c~~~f~~~DiI~L 168 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K---SKKCPVCGKPFTEEDIIPL 168 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c---cccccccCCccccCCEEEe
Confidence 57899999999999876666665 999999999999995 2 2479999999999988765
No 16
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.46 E-value=6.8e-08 Score=66.70 Aligned_cols=43 Identities=33% Similarity=0.729 Sum_probs=38.1
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCC
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCP 369 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~ 369 (382)
.||||.+.+.+.+.++.++|||+|..++|.+|.+.. .+||+|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~---~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN---NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS---SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC---CcCCccC
Confidence 599999999888889999999999999999998874 4999994
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.37 E-value=2.9e-07 Score=62.37 Aligned_cols=40 Identities=43% Similarity=1.071 Sum_probs=34.9
Q ss_pred ccccccccCCCCCCe-eccCchhhhHHHHHHHHhcCCCccccCCC
Q 016792 325 CPVSKEQTSDDNPPM-IMSCGHVLCRQSINKMSKNHSRTFKCPYC 368 (382)
Q Consensus 325 Cpi~~~~~~~~Npp~-~l~cGhv~~~~~l~~l~~~~~~~~kCP~c 368 (382)
|||+.+.+.+ |+ +++|||.|+..++.++.++ .+.++||.|
T Consensus 1 C~iC~~~~~~---~~~~~~C~H~fC~~C~~~~~~~-~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED---PVILLPCGHSFCRDCLRKWLEN-SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS---EEEETTTSEEEEHHHHHHHHHH-TSSSBTTTT
T ss_pred CCcCCccccC---CCEEecCCCcchHHHHHHHHHh-cCCccCCcC
Confidence 8999998876 55 9999999999999999886 337899998
No 18
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.34 E-value=3.4e-07 Score=61.54 Aligned_cols=38 Identities=37% Similarity=1.042 Sum_probs=31.6
Q ss_pred ccccccccCCCCCC-eeccCchhhhHHHHHHHHhcCCCccccCCC
Q 016792 325 CPVSKEQTSDDNPP-MIMSCGHVLCRQSINKMSKNHSRTFKCPYC 368 (382)
Q Consensus 325 Cpi~~~~~~~~Npp-~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c 368 (382)
|||+.+.+.+ | +.++|||+|+++++.++.+++ .+||.|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~~---~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEKN---PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHCT---SB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHCc---CCCcCC
Confidence 8999998866 6 789999999999999998773 699987
No 19
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.33 E-value=3.4e-06 Score=83.07 Aligned_cols=174 Identities=16% Similarity=0.152 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhh
Q 016792 106 DTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQL 185 (382)
Q Consensus 106 ~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF 185 (382)
...++-+++.+.|+..||-+++..+..|+|+.. +..+...| .++++.|+++.++.-...-.-.-++......|
T Consensus 16 kk~efi~il~q~l~slgy~~S~~~lE~es~ll~-~tat~klf------~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~f 88 (519)
T KOG0293|consen 16 KKGEFIRILWQILYSLGYDHSSPLLEWESGLLI-PTATTKLF------DQQVLQGQWDQQVMSLVRISFEDERNRKEAMF 88 (519)
T ss_pred ccchhhHhHHHHHHhcCccccchhhHHhhCccc-ccchHHHH------HHHHHcccHHHHHHHHhhccCcchhhhHHHHH
Confidence 345778999999999999999999999999976 55665555 67789999999998876664334555678999
Q ss_pred hchHHHHHHHHHcCCHHHHHHHHHHhcCCchhhhHHHHHHHHHhHcccCCCC-----------CC------------Cch
Q 016792 186 KLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMACLIWARKLE-----------SC------------PYP 242 (382)
Q Consensus 186 ~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~~~~~~eiq~lm~~L~f~~~~~-----------~s------------py~ 242 (382)
.+.+|.|+|+++.|+..+|+...|..+.+.. ...+.+.++...|+++.+-. ++ |-.
T Consensus 89 Lv~kQ~fLEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~ 167 (519)
T KOG0293|consen 89 LVNKQIFLEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPN 167 (519)
T ss_pred HHHHHHHHHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHh
Confidence 9999999999999999999999998777764 36778899999999874311 00 112
Q ss_pred hhcccCChHHHHHH---HHHHHHHHhCCCCCChHHHHHHhhhccccch
Q 016792 243 QLVSQTNWVTVAEE---LTRQFCNLVGQSYESPLSVTIAAGVQALPPL 287 (382)
Q Consensus 243 ~Ll~~~~w~~l~~~---F~~e~c~l~gls~~spL~~~~~aG~~aLpt~ 287 (382)
.++.+.|.+.|.++ .+++-|.+++--..-+|+....+|-..+|+-
T Consensus 168 illP~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~Dh~c~~~qip~q 215 (519)
T KOG0293|consen 168 ILLPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLSDHFCGRLQIPSQ 215 (519)
T ss_pred hcCChHHHHHHHHHHHHHHHhHhHHhcccchhhhhhhcccCcccCCch
Confidence 22344566777664 7889998888444448888999999999884
No 20
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.2e-07 Score=95.04 Aligned_cols=60 Identities=23% Similarity=0.656 Sum_probs=52.7
Q ss_pred ccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccccC
Q 016792 318 QFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF 382 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~f 382 (382)
.|--++.||+|.+..-+ -++..||||||.+|++..-... .-|||.|+..|.++|+++||+
T Consensus 639 ~yK~~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etR--qRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETR--QRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred HHHhceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHh--cCCCCCCCCCCCcccccccCC
Confidence 67889999999977666 6889999999999999886543 569999999999999999985
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=8.9e-07 Score=88.60 Aligned_cols=57 Identities=25% Similarity=0.630 Sum_probs=48.1
Q ss_pred cccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccccc
Q 016792 317 FQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQ 379 (382)
Q Consensus 317 ~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~ 379 (382)
-.+...+.||||.+.+.+ |+++||||+||..|+..+.... .+||.|+..+..+.++.
T Consensus 21 ~~Le~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~---~~CP~Cr~~~~~~~Lr~ 77 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQ---PKCPLCRAEDQESKLRS 77 (397)
T ss_pred cccccccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCC---CCCCCCCCccccccCcc
Confidence 467788999999999865 8899999999999999987653 48999999988766543
No 22
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.21 E-value=7e-07 Score=65.23 Aligned_cols=43 Identities=23% Similarity=0.623 Sum_probs=30.1
Q ss_pred ceeccccccccCCCCCCee-ccCchhhhHHHHHHHHhcCCCccccCCC
Q 016792 322 IFVCPVSKEQTSDDNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYC 368 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c 368 (382)
-+.||||+..+.+ ||. ..|||+|++++|.++.++ ++.++||..
T Consensus 11 ~~~CPiT~~~~~~---PV~s~~C~H~fek~aI~~~i~~-~~~~~CPv~ 54 (57)
T PF11789_consen 11 SLKCPITLQPFED---PVKSKKCGHTFEKEAILQYIQR-NGSKRCPVA 54 (57)
T ss_dssp -SB-TTTSSB-SS---EEEESSS--EEEHHHHHHHCTT-TS-EE-SCC
T ss_pred ccCCCCcCChhhC---CcCcCCCCCeecHHHHHHHHHh-cCCCCCCCC
Confidence 4799999999976 766 799999999999999844 347999983
No 23
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=1.7e-06 Score=83.48 Aligned_cols=57 Identities=28% Similarity=0.607 Sum_probs=43.6
Q ss_pred eeccccccccCCCCCC---eeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccccC
Q 016792 323 FVCPVSKEQTSDDNPP---MIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF 382 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp---~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~f 382 (382)
-.||+|+.--.. ||- |+-+|||.||+.|+..+...+ ...||.|+......+.+...|
T Consensus 4 ~~CP~Ck~~~y~-np~~kl~i~~CGH~~C~sCv~~l~~~~--~~~CP~C~~~lrk~~fr~q~F 63 (309)
T TIGR00570 4 QGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVRG--SGSCPECDTPLRKNNFRVQLF 63 (309)
T ss_pred CCCCcCCCCCcc-CcccccccCCCCCcccHHHHHHHhcCC--CCCCCCCCCccchhhcccccc
Confidence 379999984332 444 344899999999999987654 569999999998888765544
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.10 E-value=3.8e-06 Score=54.96 Aligned_cols=39 Identities=38% Similarity=0.998 Sum_probs=32.6
Q ss_pred ccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCC
Q 016792 325 CPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYC 368 (382)
Q Consensus 325 Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c 368 (382)
|||+.+.. .+|+.+||||+|+..++..+.+++ ..+||.|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~--~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSG--NNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhC--cCCCCCC
Confidence 78888873 359999999999999999998733 5789987
No 25
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.10 E-value=2.9e-06 Score=60.15 Aligned_cols=45 Identities=31% Similarity=0.827 Sum_probs=37.1
Q ss_pred eeccccccccCCCCCCeeccCchh-hhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHV-LCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv-~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
..|+||.+...+ ++.+||||+ ++.+++.++.+. ..+||.|++.++
T Consensus 3 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRD---VVLLPCGHLCFCEECAERLLKR---KKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHT---TSBBTTTTBB-S
T ss_pred CCCccCCccCCc---eEEeCCCChHHHHHHhHHhccc---CCCCCcCChhhc
Confidence 479999997654 899999999 999999999874 469999998754
No 26
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.06 E-value=4e-06 Score=56.82 Aligned_cols=44 Identities=36% Similarity=0.893 Sum_probs=35.0
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCc
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
.||||.+.+ .++.++.+|||+|+..++..+.+.+ ..+||.|+..
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~--~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSG--KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhC--cCCCCCCCCc
Confidence 489999887 3444555699999999999998763 5789999865
No 27
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=3.1e-06 Score=78.29 Aligned_cols=58 Identities=17% Similarity=0.397 Sum_probs=48.2
Q ss_pred ccccceeccccccccCCCCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccc
Q 016792 318 QFHSIFVCPVSKEQTSDDNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQL 380 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v 380 (382)
.-|+.|+|||++-+|+.--..+. -+||||||..+|+++-. -.|+.|+..|..+++.-|
T Consensus 107 ~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika-----s~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 107 TQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA-----SVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred cccceeecccccceecceEEEEEEeccceeccHHHHHHhhh-----ccccccCCcccccCeEee
Confidence 34899999999999988655544 49999999999999853 379999999999887643
No 28
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.8e-06 Score=76.51 Aligned_cols=61 Identities=21% Similarity=0.623 Sum_probs=54.1
Q ss_pred ccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccccccc
Q 016792 318 QFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLY 381 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~ 381 (382)
.--+.|-|-||-++..| ||+-.|||.||.-||.+|..-...+--||.|+.+.+.+.+..||
T Consensus 43 ~~~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 34578999999999988 99999999999999999987655567889999999999988776
No 29
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.81 E-value=1.4e-05 Score=74.95 Aligned_cols=49 Identities=24% Similarity=0.543 Sum_probs=38.7
Q ss_pred ceeccccccccCCCCC-----CeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 322 IFVCPVSKEQTSDDNP-----PMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Np-----p~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
-..||||.+...+... +++.+|||+||.+||.+|.+. ...||.|+..+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~---~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE---KNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc---CCCCCCCCCEee
Confidence 3589999998654321 366799999999999999865 358999998765
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.9e-05 Score=80.00 Aligned_cols=57 Identities=26% Similarity=0.586 Sum_probs=47.5
Q ss_pred ceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcC--CCccccCCCCCcCCcccccccc
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNH--SRTFKCPYCPSDIDAAQCRQLY 381 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~--~~~~kCP~c~~~~~~~~~~~v~ 381 (382)
-..||||-+.-.. |++..||||||-.||-+++.-+ .+..+||.|...+++.+++.|+
T Consensus 186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 6799999997766 5556699999999999987643 2467999999999999998775
No 31
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=3.2e-05 Score=73.24 Aligned_cols=58 Identities=22% Similarity=0.509 Sum_probs=49.3
Q ss_pred cccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccc
Q 016792 317 FQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQL 380 (382)
Q Consensus 317 ~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v 380 (382)
...+...-|-+|-+...+ |-..||||++|-.||..|.+.. -.||.|+..++++++.=+
T Consensus 234 ~i~~a~~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~ek---~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSN---PSATPCGHIFCWSCILEWCSEK---AECPLCREKFQPSKVICL 291 (293)
T ss_pred cCCCCCCceEEEecCCCC---CCcCcCcchHHHHHHHHHHccc---cCCCcccccCCCcceeee
Confidence 456778899999997755 8899999999999999998663 469999999999987643
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.63 E-value=1.6e-05 Score=76.44 Aligned_cols=61 Identities=23% Similarity=0.497 Sum_probs=52.9
Q ss_pred CCcccccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccccc
Q 016792 313 LDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQ 379 (382)
Q Consensus 313 Lp~~~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~ 379 (382)
+|.-+..-+.+.|.||.+.+.. ||..||||+||.-||.+.... ...||.|..++..++.|.
T Consensus 14 ipslk~lD~lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~---~p~CP~C~~~~~Es~Lr~ 74 (442)
T KOG0287|consen 14 IPSLKTLDDLLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSY---KPQCPTCCVTVTESDLRN 74 (442)
T ss_pred CchhhhhHHHHHHhHHHHHhcC---ceeccccchHHHHHHHHHhcc---CCCCCceecccchhhhhh
Confidence 4555678889999999998866 999999999999999998755 579999999999888764
No 33
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.62 E-value=9.8e-05 Score=45.54 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHh
Q 016792 108 HTVSQIIASHFYRQGLFEVGDCFISET 134 (382)
Q Consensus 108 ~~lnrlI~~hLlR~G~~e~a~~f~~Es 134 (382)
+.||++|.+||.++||.++|..|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 468999999999999999999999985
No 34
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.59 E-value=0.00013 Score=46.61 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCC
Q 016792 106 DTHTVSQIIASHFYRQGLFEVGDCFISETKES 137 (382)
Q Consensus 106 ~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~ 137 (382)
.+..++++|++||.++||.++|..|.+|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 35679999999999999999999999999874
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3.4e-05 Score=73.12 Aligned_cols=46 Identities=26% Similarity=0.805 Sum_probs=40.7
Q ss_pred ccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCC
Q 016792 318 QFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCP 369 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~ 369 (382)
.....+.||||.+.+.+ |+++||||.+|+.|+..+.. ..+.||.|.
T Consensus 9 ~~~~~~~C~iC~~~~~~---p~~l~C~H~~c~~C~~~~~~---~~~~Cp~cr 54 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFRE---PVLLPCGHNFCRACLTRSWE---GPLSCPVCR 54 (386)
T ss_pred hccccccChhhHHHhhc---CccccccchHhHHHHHHhcC---CCcCCcccC
Confidence 34567899999999987 69999999999999999987 369999998
No 36
>PHA02926 zinc finger-like protein; Provisional
Probab=97.50 E-value=0.0001 Score=67.60 Aligned_cols=57 Identities=19% Similarity=0.430 Sum_probs=42.4
Q ss_pred eeccccccccCCC------CCCeeccCchhhhHHHHHHHHhcC---CCccccCCCCCcCCcccccc
Q 016792 323 FVCPVSKEQTSDD------NPPMIMSCGHVLCRQSINKMSKNH---SRTFKCPYCPSDIDAAQCRQ 379 (382)
Q Consensus 323 ~~Cpi~~~~~~~~------Npp~~l~cGhv~~~~~l~~l~~~~---~~~~kCP~c~~~~~~~~~~~ 379 (382)
..|+||.|...+- =.+++.+|||+||..|+.+|.+.. +..-.||.|+..+..=-..+
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSr 236 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSK 236 (242)
T ss_pred CCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecccc
Confidence 6899999875331 136888999999999999998642 23467999999887543333
No 37
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=7.8e-05 Score=70.08 Aligned_cols=58 Identities=29% Similarity=0.571 Sum_probs=43.5
Q ss_pred ccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccc
Q 016792 318 QFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~ 378 (382)
.--|.-.||+|++.- .+|.++.+|||+||-=|+..=..- +-.|.||.|++....=+..
T Consensus 235 ~~t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~-~asf~Cp~Cg~~~~~lq~s 292 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLW-DASFTCPLCGENVEPLQAS 292 (298)
T ss_pred cccCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcc-hhhcccCccCCCCcchhhc
Confidence 345778999999966 567777889999999999864221 1269999999988743333
No 38
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=7.9e-05 Score=69.77 Aligned_cols=64 Identities=22% Similarity=0.465 Sum_probs=50.3
Q ss_pred ccccCCCCccccCCcccccccceeccccccccCCCCCCeeccCchhhhHHHHHH-HHhcCCCccccCCCCCcCCcccc
Q 016792 301 WQSMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINK-MSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 301 ~~~~~eLp~~i~Lp~~~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~-l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
.+..+++|+- ||. -+-|++|.+.+.. |.+.|||||||--||.. |.+.. .-.||.|+....++++
T Consensus 202 ~s~kn~~pfi-p~~-------d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k--~~~CplCRak~~pk~v 266 (271)
T COG5574 202 LSKKNGLPFI-PLA-------DYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKK--YEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccccCCcc-ccc-------ccceeeeecccCC---cccccccchhhHHHHHHHHHhhc--cccCchhhhhccchhh
Confidence 3456667653 233 5789999998865 99999999999999999 66654 3469999999888876
No 39
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00014 Score=67.28 Aligned_cols=56 Identities=16% Similarity=0.465 Sum_probs=46.9
Q ss_pred cceeccccccccCCCCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccccc
Q 016792 321 SIFVCPVSKEQTSDDNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQ 379 (382)
Q Consensus 321 S~~~Cpi~~~~~~~~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~ 379 (382)
-.++||||++..+..-|=.+ -|||||++.+|.++|.++. ..||.|....+-.++.-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D---~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD---MVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc---ccccCCCCcCcccceEe
Confidence 57999999999876655444 4999999999999998875 58999999988887754
No 40
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.10 E-value=0.00042 Score=53.22 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=32.2
Q ss_pred eccccccccC----------CCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCC
Q 016792 324 VCPVSKEQTS----------DDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCP 369 (382)
Q Consensus 324 ~Cpi~~~~~~----------~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~ 369 (382)
.|+||++.+. ++-+++..+|||+|-..||.+|.+.+ -.||.|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~---~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN---NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS---SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC---CcCCCCC
Confidence 3888888772 23455667999999999999999765 3999995
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.99 E-value=0.00035 Score=66.13 Aligned_cols=60 Identities=23% Similarity=0.462 Sum_probs=50.8
Q ss_pred CCcccccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccc
Q 016792 313 LDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 313 Lp~~~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~ 378 (382)
+|.-+...|.+.|.||.+.... |+..+|||.||.-||...... ..-||.|..++..+-.+
T Consensus 16 IPSL~~LDs~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~---qp~CP~Cr~~~~esrlr 75 (391)
T COG5432 16 IPSLKGLDSMLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGT---QPFCPVCREDPCESRLR 75 (391)
T ss_pred CcchhcchhHHHhhhhhheeec---ceecccccchhHHHHHHHhcC---CCCCccccccHHhhhcc
Confidence 4666788999999999999988 999999999999999987644 57899999887665443
No 42
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.83 E-value=0.0005 Score=49.31 Aligned_cols=51 Identities=18% Similarity=0.475 Sum_probs=36.6
Q ss_pred cccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 319 FHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
++....|=.++...+. .+++||||++++.+..- .+.--||+|+..+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~---~~~~pCgH~I~~~~f~~-----~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 4 QQPEQPCVFCGFVGTK---GTVLPCGHLICDNCFPG-----ERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred cccceeEEEccccccc---cccccccceeeccccCh-----hhccCCCCCCCcccCCCC
Confidence 3445556566665544 78999999999999852 223479999999887653
No 43
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00068 Score=63.65 Aligned_cols=55 Identities=27% Similarity=0.452 Sum_probs=42.6
Q ss_pred ccceeccccccccCCCC-------CCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcc
Q 016792 320 HSIFVCPVSKEQTSDDN-------PPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAA 375 (382)
Q Consensus 320 hS~~~Cpi~~~~~~~~N-------pp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~ 375 (382)
.|--+|-||+.+.+.+- .-..|.|+||+-+.|++-|.--+ .+-.||||++....+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivG-KkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVG-KKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeec-CCCCCchHHHHhhHh
Confidence 35668999999876533 36889999999999999875433 367999999876544
No 44
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0017 Score=61.95 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=41.6
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
.-|-||.+-+.....-|+|||.|++-..|+.+|.-+- +.+||.|+.+..
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y--~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY--SNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh--cccCCccCCCCC
Confidence 5799999988777778889999999999999998543 579999998754
No 45
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0031 Score=61.79 Aligned_cols=51 Identities=22% Similarity=0.557 Sum_probs=41.1
Q ss_pred cccceecccccccc-CCCC---------CCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcC
Q 016792 319 FHSIFVCPVSKEQT-SDDN---------PPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDI 372 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~-~~~N---------pp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~ 372 (382)
-.|--+|-||+++| ...| -|-.|||||++--.||+.|.+.. -.||.|+...
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq---QTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ---QTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc---cCCCcccCcc
Confidence 56778999999985 3322 35889999999999999998764 5999998763
No 46
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0033 Score=66.26 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=42.1
Q ss_pred ccceeccccccccCCCCC--CeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcc
Q 016792 320 HSIFVCPVSKEQTSDDNP--PMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAA 375 (382)
Q Consensus 320 hS~~~Cpi~~~~~~~~Np--p~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~ 375 (382)
-+.-.|+||.|.+...-. |-.|||||++...||++|.+.. -.||.|+......
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~---qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ---QTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh---CcCCcchhhhhcc
Confidence 457799999998854211 7889999999999999998874 4899999854443
No 47
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0042 Score=62.90 Aligned_cols=103 Identities=21% Similarity=0.393 Sum_probs=65.5
Q ss_pred hCCCCCChHHHHHHhhhcc----cc--chhhhhhhhccccc--------ccc--------ccC------CCCccccCCcc
Q 016792 265 VGQSYESPLSVTIAAGVQA----LP--PLLKFMTVMAGKKQ--------EWQ--------SMK------QLPVPVELDKE 316 (382)
Q Consensus 265 ~gls~~spL~~~~~aG~~a----Lp--t~~k~~~~~~~~~~--------~~~--------~~~------eLp~~i~Lp~~ 316 (382)
-| +...||+-..-.|..+ +| .+.|-.++|+..+. -|- ..+ =||-.. +|..
T Consensus 475 rg-~SR~Pl~w~yIlG~Tv~Rl~~plyVF~~s~n~~r~~p~~~f~v~L~lwmlFQv~vLl~Qd~lGsR~FlPkk~-lpe~ 552 (636)
T KOG0828|consen 475 RG-DSRKPLHWYYILGMTVTRLAIPLYVFGCSENFMRVEPKYFFAVGLVLWMLFQVLVLLVQDYLGSRCFLPKKF-LPEK 552 (636)
T ss_pred cC-CCCCCcchhhhhhHhHHhhhcceEEEecchhhhccCCchhhHHHHHHHHHHHHHHHHHHhhcccccccchhh-Cccc
Confidence 35 6667888877777642 22 34666777765331 121 011 134332 6788
Q ss_pred ccccccee-------------cccccccc------CCCCC--------CeeccCchhhhHHHHHHHHhcCCCccccCCCC
Q 016792 317 FQFHSIFV-------------CPVSKEQT------SDDNP--------PMIMSCGHVLCRQSINKMSKNHSRTFKCPYCP 369 (382)
Q Consensus 317 ~~~hS~~~-------------Cpi~~~~~------~~~Np--------p~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~ 369 (382)
|.||..+. |+||+... ++.++ -|.-||.|+|.+.||++|... .+..||.|+
T Consensus 553 YsY~r~l~~dh~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~--ykl~CPvCR 630 (636)
T KOG0828|consen 553 YSYHRRLQQDHLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT--YKLICPVCR 630 (636)
T ss_pred cccccccccccccchhhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh--hcccCCccC
Confidence 88888774 99998642 12222 455699999999999999854 257899997
Q ss_pred Cc
Q 016792 370 SD 371 (382)
Q Consensus 370 ~~ 371 (382)
.-
T Consensus 631 ~p 632 (636)
T KOG0828|consen 631 CP 632 (636)
T ss_pred CC
Confidence 54
No 48
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.96 E-value=0.01 Score=46.68 Aligned_cols=52 Identities=27% Similarity=0.434 Sum_probs=39.3
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccc
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQ 376 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~ 376 (382)
.||.|+..- ++-|.+.-.|||.|-..||.++.+..+..-.||.|++++.+.+
T Consensus 34 ~Cp~Ck~Pg-d~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k~ 85 (85)
T PF12861_consen 34 CCPDCKFPG-DDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFKE 85 (85)
T ss_pred CCCCccCCC-CCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeCC
Confidence 466666653 3456677799999999999999775433579999999887653
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.59 E-value=0.0026 Score=47.16 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=24.9
Q ss_pred cceeccccccccCCCCCCe-eccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccc
Q 016792 321 SIFVCPVSKEQTSDDNPPM-IMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 321 S~~~Cpi~~~~~~~~Npp~-~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~ 378 (382)
+-+.|++|.+.+.+ || +-.|.|+||+.|+..-. + -.||.|.......|++
T Consensus 6 ~lLrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~--~---~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 6 ELLRCSICFDILKE---PVCLGGCEHIFCSSCIRDCI--G---SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp HTTS-SSS-S--SS----B---SSS--B-TTTGGGGT--T---TB-SSS--B-S-SS--
T ss_pred HhcCCcHHHHHhcC---CceeccCccHHHHHHhHHhc--C---CCCCCcCChHHHHHHH
Confidence 35689999999976 65 57999999999996421 1 2699999888877765
No 50
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.39 E-value=0.027 Score=39.73 Aligned_cols=44 Identities=11% Similarity=0.581 Sum_probs=34.2
Q ss_pred eccccccccCCCCCCeeccCc-----hhhhHHHHHHHHhcCCCccccCCCC
Q 016792 324 VCPVSKEQTSDDNPPMIMSCG-----HVLCRQSINKMSKNHSRTFKCPYCP 369 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cG-----hv~~~~~l~~l~~~~~~~~kCP~c~ 369 (382)
+|.||.+..+++| |+..||. |.+-..+|.+|....+ ..+||.|+
T Consensus 1 ~CrIC~~~~~~~~-~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGD-PLVSPCRCKGSLKYVHQECLERWINESG-NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCC-eeEeccccCCchhHHHHHHHHHHHHHcC-CCcCCCCC
Confidence 5889988444444 7899996 8999999999986653 45999985
No 51
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.011 Score=58.33 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=42.3
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
+.|-||-|.+.+..--..|||+|.|-..|+..|.... +--||.|+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~--r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT--RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc--CccCCCCCCcCC
Confidence 7999999999988888889999999999999997654 346999998654
No 52
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.02 Score=55.38 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=45.3
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccccccc
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLY 381 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~ 381 (382)
-+||||.+ +..||-++-.-|.|+|-.|+-+...+ .-+||.++...+.++.+|+|
T Consensus 301 ~~CpvClk--~r~Nptvl~vSGyVfCY~Ci~~Yv~~---~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 301 EVCPVCLK--KRQNPTVLEVSGYVFCYPCIFSYVVN---YGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccChhHHh--ccCCCceEEecceEEeHHHHHHHHHh---cCCCCccCCcchHHHHHHHh
Confidence 38999987 44787777777999999999998764 45999999999998888876
No 53
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.015 Score=57.92 Aligned_cols=59 Identities=24% Similarity=0.529 Sum_probs=41.7
Q ss_pred ccceeccccccccCCCCCCeeccCchhhhHHHHHHHHh----cC-CCccccC--CCCCcCCccccc
Q 016792 320 HSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSK----NH-SRTFKCP--YCPSDIDAAQCR 378 (382)
Q Consensus 320 hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~----~~-~~~~kCP--~c~~~~~~~~~~ 378 (382)
.|-|-|-||-+.....---+.+||+||+|+.|+..... .+ ....+|| -|+.+.....++
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vK 247 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVK 247 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHH
Confidence 68899999988766655567799999999999998643 22 1346776 455555444433
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.38 E-value=0.14 Score=50.75 Aligned_cols=190 Identities=17% Similarity=0.280 Sum_probs=101.6
Q ss_pred HHHHHHHHH-cCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHh-----cCCchhhhHHHH
Q 016792 150 MYQILEAMK-SGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARAN-----LAPFASNHVNEI 223 (382)
Q Consensus 150 ~~~I~~~L~-~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~-----l~~f~~~~~~ei 223 (382)
+++..-+++ .|.+..|.+.|++...--...+..--.-....-|-.+.++..-.|+ .|.|=. +.. ..+.+.++
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~-af~rYe~Am~~m~~-~gdrmgqv 286 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER-AFRRYEQAMGTMAS-LGDRMGQV 286 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH-HHHHHHHHHHHHhh-hhhhHHHH
Confidence 455566666 6999999999998754444555555566666677777776544444 222200 000 01233333
Q ss_pred HHHHHhHcccCCCCCCCchhhcccCChHHHHHHHHHHHHHHhCCCCCChHHHHHHhhh--ccccchhhhhhhhccccc--
Q 016792 224 QKLMACLIWARKLESCPYPQLVSQTNWVTVAEELTRQFCNLVGQSYESPLSVTIAAGV--QALPPLLKFMTVMAGKKQ-- 299 (382)
Q Consensus 224 q~lm~~L~f~~~~~~spy~~Ll~~~~w~~l~~~F~~e~c~l~gls~~spL~~~~~aG~--~aLpt~~k~~~~~~~~~~-- 299 (382)
+-+.|.- .-|+.+-..-+-..|.-+... .--+.++-+.|. ..++-...+..+++.++.
T Consensus 287 ~al~g~A-----------------kc~~~~r~~~k~~~Crale~n-~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d 348 (518)
T KOG1941|consen 287 EALDGAA-----------------KCLETLRLQNKICNCRALEFN-TRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQD 348 (518)
T ss_pred HHHHHHH-----------------HHHHHHHHhhcccccchhHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchh
Confidence 3322211 112222111111112111111 113455555564 455555556666655431
Q ss_pred ccc----ccCCCCccccCCcccccccceeccccccccCCCCCC-eeccCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 300 EWQ----SMKQLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPP-MIMSCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 300 ~~~----~~~eLp~~i~Lp~~~~~hS~~~Cpi~~~~~~~~Npp-~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
+.. ..+++--|. -+.|..|||....-|-- =.|||.|++-.+|+..+..+++ .-.||-|++
T Consensus 349 ~~~~h~~ra~~~~~e~----------~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~-~rsCP~Crk 413 (518)
T KOG1941|consen 349 ELRAHVVRAHECVEET----------ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG-TRSCPNCRK 413 (518)
T ss_pred HHHHHHHHHHHHHHHH----------hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC-CCCCccHHH
Confidence 111 122222232 45799999987654433 4599999999999999876653 569999984
No 55
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.33 E-value=0.039 Score=39.08 Aligned_cols=44 Identities=25% Similarity=0.597 Sum_probs=24.2
Q ss_pred eeccccccccCCCCCCee-ccCchh--hhHHHHHHHHhcCCCccccCCCCC
Q 016792 323 FVCPVSKEQTSDDNPPMI-MSCGHV--LCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~-l~cGhv--~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
+.||+++..+.- |+. -.|-|+ |..++.-...... +..+||.|.+
T Consensus 3 L~CPls~~~i~~---P~Rg~~C~H~~CFDl~~fl~~~~~~-~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRI---PVRGKNCKHLQCFDLESFLESNQRT-PKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SS---EEEETT--SS--EEHHHHHHHHHHS----B-TTT--
T ss_pred eeCCCCCCEEEe---CccCCcCcccceECHHHHHHHhhcc-CCeECcCCcC
Confidence 689999999855 555 899998 4455555555543 3699999975
No 56
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.0083 Score=58.60 Aligned_cols=52 Identities=21% Similarity=0.462 Sum_probs=40.7
Q ss_pred ccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 318 QFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
.||+-++||||-+...- -=+...|+|-||.+||.+-.+.++ -.||.|++...
T Consensus 39 ~~~~~v~c~icl~llk~--tmttkeClhrfc~~ci~~a~r~gn--~ecptcRk~l~ 90 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKK--TMTTKECLHRFCFDCIWKALRSGN--NECPTCRKKLV 90 (381)
T ss_pred HhhhhhccHHHHHHHHh--hcccHHHHHHHHHHHHHHHHHhcC--CCCchHHhhcc
Confidence 68999999999886643 123478999999999998766543 48999987653
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.19 E-value=0.025 Score=51.05 Aligned_cols=46 Identities=22% Similarity=0.571 Sum_probs=37.2
Q ss_pred ceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
.|.|-||++-+.. ||+-.|||-+|..|.-+=-+++ -+|-.|++...
T Consensus 196 PF~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg---~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKG---DECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccc---hhhhhcchhHHHHHHHHHhccC---Ccceecchhhc
Confidence 5899999998876 9999999999999865544343 48999988764
No 58
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.028 Score=53.94 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=37.0
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcc
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAA 375 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~ 375 (382)
.|+||..-+ |-|+.|+|||++|--||+--.+++ ...||.|...+..+
T Consensus 9 eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~nd--k~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTG---NCPVNLYCFHKFCYICIKGSYKND--KKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccC---CcCccccccchhhhhhhcchhhcC--CCCCceecCCCCcc
Confidence 688887654 458999999999999998665554 55799999877643
No 59
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.89 E-value=0.031 Score=55.43 Aligned_cols=54 Identities=26% Similarity=0.706 Sum_probs=39.0
Q ss_pred ccce-eccccccccCCCCCCe-eccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccc
Q 016792 320 HSIF-VCPVSKEQTSDDNPPM-IMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 320 hS~~-~Cpi~~~~~~~~Npp~-~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~ 378 (382)
-|.| .|.||-| +|--+ .-||||.+|..||..|...+. .-.||+|+-|+.-.+..
T Consensus 366 gsTFeLCKICae----ndKdvkIEPCGHLlCt~CLa~WQ~sd~-gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 366 GSTFELCKICAE----NDKDVKIEPCGHLLCTSCLAAWQDSDE-GQTCPFCRCEIKGTEPV 421 (563)
T ss_pred cchHHHHHHhhc----cCCCcccccccchHHHHHHHhhcccCC-CCCCCceeeEeccccce
Confidence 3444 6888877 33333 469999999999999975432 45899999887755543
No 60
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.04 Score=53.42 Aligned_cols=50 Identities=30% Similarity=0.755 Sum_probs=41.6
Q ss_pred cceeccccccccCC---CCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcC
Q 016792 321 SIFVCPVSKEQTSD---DNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDI 372 (382)
Q Consensus 321 S~~~Cpi~~~~~~~---~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~ 372 (382)
|.+.|-||.+.++. +.-|-.|.|||.+|..++.++..++ ...||.|....
T Consensus 2 ~~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~--~i~cpfcR~~~ 54 (296)
T KOG4185|consen 2 SFPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS--RILCPFCRETT 54 (296)
T ss_pred CCCceeecCccccccCcccCCcccccCceehHhHHHHHhcCc--eeeccCCCCcc
Confidence 45678888887643 5679999999999999999998776 68899999874
No 61
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=93.84 E-value=0.027 Score=52.88 Aligned_cols=47 Identities=32% Similarity=0.493 Sum_probs=36.9
Q ss_pred ceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCc
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
.+.||+++... .||-+.-.|||||.++++..+... ..+.+||.=+-+
T Consensus 176 s~rdPis~~~I--~nPviSkkC~HvydrDsI~~~l~~-~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPI--VNPVISKKCGHVYDRDSIMQILCD-EITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhh--hchhhhcCcCcchhhhhHHHHhcc-CceeecccccCC
Confidence 36899997755 787777899999999999999765 346899964433
No 62
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.025 Score=56.31 Aligned_cols=58 Identities=24% Similarity=0.580 Sum_probs=43.8
Q ss_pred eeccccccccC--CCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccccccc
Q 016792 323 FVCPVSKEQTS--DDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLY 381 (382)
Q Consensus 323 ~~Cpi~~~~~~--~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v~ 381 (382)
-+||||-+.++ .+..-+.|.|||.++.+|+++|.-+ .....||.|..+.+..+++..|
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k-~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK-KTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh-hhhhhCcccCChhHHHHHHHHH
Confidence 37999877543 3333455999999999999999743 2357999999998888877554
No 63
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.042 Score=55.50 Aligned_cols=49 Identities=27% Similarity=0.736 Sum_probs=39.4
Q ss_pred cccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 319 FHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
.-|-|.|-||..-.- ||+.+||||.+|..||.+.... .-.||.|..++.
T Consensus 81 ~~sef~c~vc~~~l~---~pv~tpcghs~c~~Cl~r~ld~---~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 81 IRSEFECCVCSRALY---PPVVTPCGHSFCLECLDRSLDQ---ETECPLCRDELV 129 (398)
T ss_pred ccchhhhhhhHhhcC---CCccccccccccHHHHHHHhcc---CCCCcccccccc
Confidence 368899999976554 3999999999999999885543 458999987765
No 64
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.35 E-value=0.052 Score=51.93 Aligned_cols=43 Identities=35% Similarity=0.846 Sum_probs=34.6
Q ss_pred eeccccccccCCCCCCeec-cCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 323 FVCPVSKEQTSDDNPPMIM-SCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l-~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
+.||.|+-... | ||.. -|||.+|++||..-.-.+ -|+||.|..
T Consensus 275 LkCplc~~Llr--n-p~kT~cC~~~fc~eci~~al~ds--Df~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLR--N-PMKTPCCGHTFCDECIGTALLDS--DFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhh--C-cccCccccchHHHHHHhhhhhhc--cccCCCccc
Confidence 89999999884 4 6766 789999999998654333 599999975
No 65
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.15 E-value=0.12 Score=43.95 Aligned_cols=55 Identities=18% Similarity=0.557 Sum_probs=46.1
Q ss_pred cceeccccccccCCCCCCeec---cCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 321 SIFVCPVSKEQTSDDNPPMIM---SCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 321 S~~~Cpi~~~~~~~~Npp~~l---~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
.+..|-||+|.++|+- ..- =||.-+|--|--.|++-.+...+||.|...|..+..
T Consensus 79 ~lYeCnIC~etS~ee~--FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 79 KLYECNICKETSAEER--FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred CceeccCcccccchhh--cCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 5789999999998842 332 599999999999999987668999999999987654
No 66
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.87 E-value=0.079 Score=51.55 Aligned_cols=54 Identities=26% Similarity=0.550 Sum_probs=44.2
Q ss_pred eccccccccCC--CCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccccc
Q 016792 324 VCPVSKEQTSD--DNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQL 380 (382)
Q Consensus 324 ~Cpi~~~~~~~--~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~v 380 (382)
.||.|.|.|+. -| ..--|||+-+|+=|-..+..+-+ .+||-|+..+.-++++-|
T Consensus 16 ~cplcie~mditdkn-f~pc~cgy~ic~fc~~~irq~ln--grcpacrr~y~denv~~~ 71 (480)
T COG5175 16 YCPLCIEPMDITDKN-FFPCPCGYQICQFCYNNIRQNLN--GRCPACRRKYDDENVRYV 71 (480)
T ss_pred cCcccccccccccCC-cccCCcccHHHHHHHHHHHhhcc--CCChHhhhhccccceeEE
Confidence 39999999864 34 45579999999999999988753 489999999998887744
No 67
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.088 Score=50.33 Aligned_cols=53 Identities=28% Similarity=0.579 Sum_probs=36.6
Q ss_pred eccccccccC--CCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccc
Q 016792 324 VCPVSKEQTS--DDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 324 ~Cpi~~~~~~--~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~ 378 (382)
.||+|+.--- .+=--|+-||||.+|..|+..|-.-+ ..-||.|.+.-..+..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g--~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG--PAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC--CCCCCcccchhhhcccc
Confidence 5999986221 00001223999999999999997655 57999998876665544
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.41 E-value=0.16 Score=35.62 Aligned_cols=47 Identities=23% Similarity=0.598 Sum_probs=23.4
Q ss_pred ccccccccCCCCC-CeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 325 CPVSKEQTSDDNP-PMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 325 Cpi~~~~~~~~Np-p~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
||+|-+.++...- -.-=+||+-||+.+..++.++. ..+||-|++.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~--~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE--GGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS---SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc--CCCCCCCCCCCC
Confidence 7888888754321 1224899999999999998643 359999998763
No 69
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=0.066 Score=56.08 Aligned_cols=39 Identities=15% Similarity=0.515 Sum_probs=28.9
Q ss_pred ccceecccc-ccccCCCCCCeeccCchhhhHHHHHHHHhc
Q 016792 320 HSIFVCPVS-KEQTSDDNPPMIMSCGHVLCRQSINKMSKN 358 (382)
Q Consensus 320 hS~~~Cpi~-~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~ 358 (382)
.-.+.|+|| .+-....=-|+.|-|||++|+.|++++-..
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~ 48 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA 48 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc
Confidence 345678888 333333345999999999999999998643
No 70
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=91.50 E-value=0.055 Score=53.85 Aligned_cols=61 Identities=26% Similarity=0.612 Sum_probs=0.0
Q ss_pred ceeccccccccC--------------CCCCC--eeccCchhhhHHHHHHHHhcC----C--CccccCCCCCcCCc-cccc
Q 016792 322 IFVCPVSKEQTS--------------DDNPP--MIMSCGHVLCRQSINKMSKNH----S--RTFKCPYCPSDIDA-AQCR 378 (382)
Q Consensus 322 ~~~Cpi~~~~~~--------------~~Npp--~~l~cGhv~~~~~l~~l~~~~----~--~~~kCP~c~~~~~~-~~~~ 378 (382)
.-.||+|+.... |.-|| .--|||||.|.+...-|++-. . -+-.||+|-.-... .-..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~v 407 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYV 407 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCce
Confidence 457888876432 22233 224999999999999988732 1 13689999876653 3344
Q ss_pred cccC
Q 016792 379 QLYF 382 (382)
Q Consensus 379 ~v~f 382 (382)
|++|
T Consensus 408 rLiF 411 (416)
T PF04710_consen 408 RLIF 411 (416)
T ss_dssp ----
T ss_pred EEEE
Confidence 5544
No 71
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.47 E-value=0.13 Score=52.86 Aligned_cols=53 Identities=21% Similarity=0.527 Sum_probs=42.9
Q ss_pred ccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhc--CCCccccCCCCCcCCcc
Q 016792 320 HSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKN--HSRTFKCPYCPSDIDAA 375 (382)
Q Consensus 320 hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~--~~~~~kCP~c~~~~~~~ 375 (382)
.+..+|.+|.+...+ |+.-.|.|++|+-|+.....+ .+..+.||.|-.-.+.+
T Consensus 534 k~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 467899999998877 899999999999999887443 12249999998776654
No 72
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.60 E-value=0.16 Score=49.43 Aligned_cols=47 Identities=30% Similarity=0.581 Sum_probs=39.6
Q ss_pred ccccceeccccccccCCCCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 318 QFHSIFVCPVSKEQTSDDNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
-.+.++-||||.+.++. |.+ =++||..|..|-.++ .-+||+|...+.
T Consensus 44 ~~~~lleCPvC~~~l~~---Pi~QC~nGHlaCssC~~~~------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSP---PIFQCDNGHLACSSCRTKV------SNKCPTCRLPIG 91 (299)
T ss_pred cchhhccCchhhccCcc---cceecCCCcEehhhhhhhh------cccCCccccccc
Confidence 46889999999999986 766 689999999998755 348999998876
No 73
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.67 E-value=0.15 Score=51.41 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=36.2
Q ss_pred eccccccccCCCC-CCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 324 VCPVSKEQTSDDN-PPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 324 ~Cpi~~~~~~~~N-pp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
.||||-|.|+++= --+..+|-|.|--.|+.+|.- -.||.|+-..+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~-----~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD-----SSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhccc-----CcChhhhhhcC
Confidence 8999999998763 335589999999999999963 36888876665
No 74
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=0.11 Score=49.67 Aligned_cols=46 Identities=24% Similarity=0.562 Sum_probs=36.8
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCc
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDA 374 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~ 374 (382)
|.|-||++.+-. ||+-.|||.+|..|-.+=-+. .-+|+.|.+.++-
T Consensus 242 f~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk---~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQK---GEKCYVCSQQTHG 287 (313)
T ss_pred cccccccccccc---chhhcCCceeehhhhcccccc---CCcceeccccccc
Confidence 689999998876 999999999999986543333 2599999987654
No 75
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.00 E-value=0.25 Score=47.41 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=37.0
Q ss_pred eeccccccccCCC-CCCeeccCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 323 FVCPVSKEQTSDD-NPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 323 ~~Cpi~~~~~~~~-Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
+.||++.+-+... .+|-.++|||.....+++.+...+ +.||.|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~---y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG---YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC---CCCCcccc
Confidence 3499999987654 456679999999999999987653 89999987
No 76
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=88.94 E-value=0.2 Score=51.84 Aligned_cols=166 Identities=14% Similarity=0.038 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHhCCCcchhh---hHHHHH--------HHHHHHHHHHcCChHHHHHHHHhcchHhhh-
Q 016792 111 SQIIASHFYRQGLFEVGDCFISETKESECSAA---ILSIFE--------DMYQILEAMKSGNLEPALKWAAANSDKLTQ- 178 (382)
Q Consensus 111 nrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~---~~~~f~--------~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~- 178 (382)
...+..|++..|+.+++..+...+.-.. ++. -...+. .+......+-.+-+..+.+.+.+.......
T Consensus 253 t~~~~~~~l~~~~~~s~~~~s~~~~~~~-~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 331 (469)
T KOG1477|consen 253 TVPYPYFLLPGGYEESIAYFSTGARRFN-DPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRKV 331 (469)
T ss_pred CCCccceecCcchhhhhhhhcchhhccC-CcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhccccccccccc
Confidence 3578899999999999998887664322 110 001111 122222222346666777777666655554
Q ss_pred ------cCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhcCCchh-----hhHHHHHHHHHhHcccCCCCCCCchhhccc
Q 016792 179 ------NGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFAS-----NHVNEIQKLMACLIWARKLESCPYPQLVSQ 247 (382)
Q Consensus 179 ------~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~~-----~~~~eiq~lm~~L~f~~~~~~spy~~Ll~~ 247 (382)
..+..-+.++.+.+|.+.+.|.....++|-+.++++... ...+.++..|++|+|. ++..||-..++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays-~p~~s~~g~~~~~ 410 (469)
T KOG1477|consen 332 GQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYS-DPEESPVGYLLDP 410 (469)
T ss_pred ceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhc-CcccCccccccCc
Confidence 346788999999999999999999999999999998765 4668899999999998 5677787888899
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCChHHHHHH
Q 016792 248 TNWVTVAEELTRQFCNLVGQSYESPLSVTIA 278 (382)
Q Consensus 248 ~~w~~l~~~F~~e~c~l~gls~~spL~~~~~ 278 (382)
...+-+++..+.......+.+.+++|..++.
T Consensus 411 ~~~e~v~~~~n~~il~t~~~~~~~~l~~~l~ 441 (469)
T KOG1477|consen 411 IQREPVAEALNSAILETDNNSKDPDLERVLS 441 (469)
T ss_pred ccchhHHhhhcccccccCCCCccchhhhhhc
Confidence 9999999999999999999999999666554
No 77
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.88 E-value=0.11 Score=42.07 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=24.0
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHH
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSIN 353 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~ 353 (382)
=.|+||++.... .+-++.|||||+-..|++
T Consensus 79 ~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 369999998865 456779999999887764
No 78
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=88.19 E-value=0.099 Score=39.72 Aligned_cols=53 Identities=25% Similarity=0.440 Sum_probs=24.2
Q ss_pred eeccccccccC-CCCCCee-c---cCchhhhHHHHHHHHhc--CC------CccccCCCCCcCCcc
Q 016792 323 FVCPVSKEQTS-DDNPPMI-M---SCGHVLCRQSINKMSKN--HS------RTFKCPYCPSDIDAA 375 (382)
Q Consensus 323 ~~Cpi~~~~~~-~~Npp~~-l---~cGhv~~~~~l~~l~~~--~~------~~~kCP~c~~~~~~~ 375 (382)
..|+||.+... .+.-|.. = .||+++-..||.+|... ++ ...+||||.+..+.+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 46999988754 2223333 2 79999999999998542 11 125899999887654
No 79
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=88.08 E-value=0.28 Score=49.34 Aligned_cols=32 Identities=28% Similarity=0.707 Sum_probs=28.3
Q ss_pred ceeccccccccCCCCCCeeccCchhhhHHHHHHHH
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMS 356 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~ 356 (382)
.+-||||+.-+.+ |+.|||||-+|+.|-..+.
T Consensus 4 elkc~vc~~f~~e---piil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 4 ELKCPVCGSFYRE---PIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccCceehhhccC---ceEeecccHHHHHHHHhhc
Confidence 3579999999988 9999999999999987764
No 80
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=87.50 E-value=0.26 Score=49.93 Aligned_cols=49 Identities=29% Similarity=0.721 Sum_probs=39.9
Q ss_pred ceeccccccccCCCCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccc
Q 016792 322 IFVCPVSKEQTSDDNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQ 376 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~ 376 (382)
-+.||+|...+-+ |+- ..|||.||..|+.++... ..+||.|......++
T Consensus 21 ~l~C~~C~~vl~~---p~~~~~cgh~fC~~C~~~~~~~---~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 21 NLLCPICMSVLRD---PVQTTTCGHRFCAGCLLESLSN---HQKCPVCRQELTQAE 70 (391)
T ss_pred cccCccccccccC---CCCCCCCCCcccccccchhhcc---CcCCcccccccchhh
Confidence 4789999999876 555 799999999999998765 579999977665544
No 81
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=0.55 Score=46.71 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=31.0
Q ss_pred eccccccccC-CCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCC
Q 016792 324 VCPVSKEQTS-DDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCP 369 (382)
Q Consensus 324 ~Cpi~~~~~~-~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~ 369 (382)
.|.||-+-.. ++|---.=.|||||-..||.+|.......-.||.|.
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 6888833221 223222335999999999999987643235899998
No 82
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=86.27 E-value=0.47 Score=45.91 Aligned_cols=32 Identities=25% Similarity=0.675 Sum_probs=24.4
Q ss_pred ccCchhhhHHHHHHHHhcC----C--CccccCCCCCcC
Q 016792 341 MSCGHVLCRQSINKMSKNH----S--RTFKCPYCPSDI 372 (382)
Q Consensus 341 l~cGhv~~~~~l~~l~~~~----~--~~~kCP~c~~~~ 372 (382)
-|||||-|++...-|++-. . -.-.||+|..-.
T Consensus 376 ~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 376 NPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred CCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 3999999999999988732 1 246899997643
No 83
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=0.52 Score=36.19 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=37.1
Q ss_pred eccccccccCCCCCCeec-cCchhhhHHHHHHHHhcCCCccccCCCCCcCCcc
Q 016792 324 VCPVSKEQTSDDNPPMIM-SCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAA 375 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l-~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~ 375 (382)
.||-|+-.- ++-|+++ -|-|.+-.-|+.++....+..-.||.|++++.+.
T Consensus 33 ~Cp~Ck~Pg--DdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 33 CCPDCKLPG--DDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred cCCCCcCCC--CCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 455555433 4557665 7999999999999866554568999999998764
No 84
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=85.30 E-value=0.52 Score=41.06 Aligned_cols=17 Identities=29% Similarity=0.888 Sum_probs=12.8
Q ss_pred CCccccCCCCCcCCccc
Q 016792 360 SRTFKCPYCPSDIDAAQ 376 (382)
Q Consensus 360 ~~~~kCP~c~~~~~~~~ 376 (382)
.+.|.||+|+.+....+
T Consensus 121 ~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 121 DGTFTCPRCGEELEEDD 137 (147)
T ss_pred CCcEECCCCCCEEEEcC
Confidence 34699999998875543
No 85
>PF14353 CpXC: CpXC protein
Probab=85.30 E-value=0.59 Score=39.51 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=29.1
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcc
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAA 375 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~ 375 (382)
+.||.|+..+..+=...+-. .-..+..+++..+.-..+.||.|+..+.+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~---~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINA---DEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcC---cCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 57999988664321111111 112244555555544579999999998754
No 86
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.17 E-value=0.65 Score=46.09 Aligned_cols=54 Identities=20% Similarity=0.478 Sum_probs=40.5
Q ss_pred ccceeccccccccCCCC-----CCeeccCchhhhHHHHHHHHhcCC----CccccCCCCCcCC
Q 016792 320 HSIFVCPVSKEQTSDDN-----PPMIMSCGHVLCRQSINKMSKNHS----RTFKCPYCPSDID 373 (382)
Q Consensus 320 hS~~~Cpi~~~~~~~~N-----pp~~l~cGhv~~~~~l~~l~~~~~----~~~kCP~c~~~~~ 373 (382)
-+...|-||++...+-. --...+|-|.+|.+|+.+|..... ....||.|+....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 56889999999887733 112357999999999999985421 2479999987654
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.13 E-value=0.5 Score=51.61 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=27.4
Q ss_pred cccceeccccccccCCCCCCeeccCchhhhHHHHHHH
Q 016792 319 FHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKM 355 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l 355 (382)
+-+-=.|-+|+...-.. |.++.||||-+-++||.+-
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHH
Confidence 34555788887755432 6788999999999999884
No 88
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=83.05 E-value=2.8 Score=36.21 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=48.6
Q ss_pred HHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 016792 166 LKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMA 228 (382)
Q Consensus 166 l~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~~~~~~eiq~lm~ 228 (382)
..|+...-+.-+..=+.+-|=+...-|++|+.+|...+|..|..++-+-|...|.++|+++.+
T Consensus 23 ~~wv~~sld~yK~EL~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~ 85 (142)
T PF04494_consen 23 RNWVDNSLDIYKPELSRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSS 85 (142)
T ss_dssp HHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT
T ss_pred HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 456665433333223468999999999999999999999999999888888889999999853
No 89
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=81.81 E-value=0.53 Score=33.66 Aligned_cols=15 Identities=33% Similarity=1.074 Sum_probs=11.4
Q ss_pred ccccCCCCCcCCccc
Q 016792 362 TFKCPYCPSDIDAAQ 376 (382)
Q Consensus 362 ~~kCP~c~~~~~~~~ 376 (382)
.|.||||++.++..+
T Consensus 2 ~f~CP~C~~~~~~~~ 16 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS 16 (54)
T ss_pred CcCCCCCCCccCHHH
Confidence 589999999766544
No 90
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=80.70 E-value=1.1 Score=37.07 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=11.2
Q ss_pred ccccCCCCCcCCcc
Q 016792 362 TFKCPYCPSDIDAA 375 (382)
Q Consensus 362 ~~kCP~c~~~~~~~ 375 (382)
.+.||||+.++.++
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 46788888888877
No 91
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=80.69 E-value=1.2 Score=28.85 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=10.6
Q ss_pred ceeccccccccCCCCCC
Q 016792 322 IFVCPVSKEQTSDDNPP 338 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp 338 (382)
.++|++||.....+.||
T Consensus 2 ~~~C~~CG~i~~g~~~p 18 (34)
T cd00729 2 VWVCPVCGYIHEGEEAP 18 (34)
T ss_pred eEECCCCCCEeECCcCC
Confidence 36777777766555444
No 92
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=80.19 E-value=35 Score=31.05 Aligned_cols=91 Identities=24% Similarity=0.295 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcCCCChHhhhccccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHc
Q 016792 80 ALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKS 159 (382)
Q Consensus 80 ~~~k~~k~idk~f~~~l~~~~~~~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~ 159 (382)
-+.+|.|++++.. ...+.+|--|+|.|..+-|..+.+.-....
T Consensus 27 kl~qyqkR~e~~l----------------e~Er~~Ar~lird~rKdrAlllLKkKryQE--------------------- 69 (209)
T KOG2910|consen 27 KLKQYQKRLEKQL----------------EAERQLARDLIRDGRKDRALLLLKKKRYQE--------------------- 69 (209)
T ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHhChHHHHHHHHHHHHHHH---------------------
Confidence 3788888888653 345788999999999888887776544322
Q ss_pred CChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhcC
Q 016792 160 GNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLA 213 (382)
Q Consensus 160 gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~ 213 (382)
+=++-+-.|+. .++..-+++||..-..++++=++.| .+||.-.++.|.
T Consensus 70 ~Ll~qt~~qL~----nlEqmvsdiEft~vqk~V~~gLk~G--N~~lkkl~~~~~ 117 (209)
T KOG2910|consen 70 ELLTQTDNQLI----NLEQMVSDIEFTQVQKKVMEGLKQG--NEALKKLQQEFD 117 (209)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcC
Confidence 11233445553 3455558999999999999999998 567777776654
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.18 E-value=1.1 Score=48.87 Aligned_cols=42 Identities=21% Similarity=0.555 Sum_probs=32.7
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcC
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDI 372 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~ 372 (382)
-.|..|+-..+- |-|-+-|||.|-..|+. . +..+||.|..+.
T Consensus 841 skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e----~--~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDL--PFVHFLCGHSYHQHCLE----D--KEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCcccc--ceeeeecccHHHHHhhc----c--CcccCCccchhh
Confidence 478888877755 44559999999999998 2 268999998743
No 94
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=79.93 E-value=3.1 Score=35.51 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=48.6
Q ss_pred HHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 016792 166 LKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMA 228 (382)
Q Consensus 166 l~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~~~~~~eiq~lm~ 228 (382)
-.|+.+.-+..+..=+.+-|=+...-|++|+.+|...+|..+..++-+-|...|.++|+++.+
T Consensus 12 ~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~ 74 (133)
T cd08044 12 RKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSS 74 (133)
T ss_pred HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHc
Confidence 356666533322222458888999999999999999999999998877787789999999844
No 95
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.11 E-value=0.53 Score=50.67 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=30.0
Q ss_pred ccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccc
Q 016792 341 MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 341 l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~ 378 (382)
-+|||.||..||..|++.. -.||.|..+|..-.+.
T Consensus 142 k~c~H~FC~~Ci~sWsR~a---qTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 142 KHTAHYFCEECVGSWSRCA---QTCPVDRGEFGEVKVL 176 (1134)
T ss_pred cccccccHHHHhhhhhhhc---ccCchhhhhhheeeee
Confidence 6999999999999999875 4899999999765543
No 96
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=78.41 E-value=0.76 Score=49.73 Aligned_cols=50 Identities=20% Similarity=0.545 Sum_probs=39.5
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
+.|++|-+ .-+|+.-+|||+.|.+|+.+........ +||.|.......++
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCC-CCcHHHHHHHHHHH
Confidence 79999999 2348999999999999999987654333 89999877655543
No 97
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.16 E-value=1 Score=42.11 Aligned_cols=45 Identities=27% Similarity=0.642 Sum_probs=33.9
Q ss_pred eccccccccCCCCCCeec---c-CchhhhHHHHHHHHhcCCCccccC--CCCCc
Q 016792 324 VCPVSKEQTSDDNPPMIM---S-CGHVLCRQSINKMSKNHSRTFKCP--YCPSD 371 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l---~-cGhv~~~~~l~~l~~~~~~~~kCP--~c~~~ 371 (382)
.||||+.--- -||-|.+ | |=|-+|..|+.++..-+ .-.|| -|++.
T Consensus 12 ~CPvCksDrY-LnPdik~linPECyHrmCESCvdRIFs~G--pAqCP~~gC~kI 62 (314)
T COG5220 12 RCPVCKSDRY-LNPDIKILINPECYHRMCESCVDRIFSRG--PAQCPYKGCGKI 62 (314)
T ss_pred cCCccccccc-cCCCeEEEECHHHHHHHHHHHHHHHhcCC--CCCCCCccHHHH
Confidence 6999986321 4777664 6 99999999999997655 67999 46554
No 98
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=78.10 E-value=2.5 Score=37.18 Aligned_cols=49 Identities=10% Similarity=0.357 Sum_probs=37.5
Q ss_pred eccccccccCCCCCCeeccCch-----hhhHHHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGH-----VLCRQSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGh-----v~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
.|.||.+..++ ..-||.. ..-++||++|...+ +...||.|..+|.....
T Consensus 10 ~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s-~~~~CeiC~~~Y~i~~~ 63 (162)
T PHA02825 10 CCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTS-KNKSCKICNGPYNIKKN 63 (162)
T ss_pred eeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcC-CCCcccccCCeEEEEEe
Confidence 78888876432 3458877 66899999998765 46899999999987643
No 99
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.75 E-value=1.2 Score=44.03 Aligned_cols=41 Identities=32% Similarity=0.750 Sum_probs=26.1
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
.|-||-++- .| -+-+||||+-| |. ..++.. .+||.|.....
T Consensus 307 lcVVcl~e~--~~-~~fvpcGh~cc--ct-~cs~~l---~~CPvCR~rI~ 347 (355)
T KOG1571|consen 307 LCVVCLDEP--KS-AVFVPCGHVCC--CT-LCSKHL---PQCPVCRQRIR 347 (355)
T ss_pred ceEEecCCc--cc-eeeecCCcEEE--ch-HHHhhC---CCCchhHHHHH
Confidence 566665544 33 67799999977 32 233332 46999986543
No 100
>PHA02862 5L protein; Provisional
Probab=77.20 E-value=2.6 Score=36.47 Aligned_cols=49 Identities=14% Similarity=0.402 Sum_probs=37.2
Q ss_pred eccccccccCCCCCCeeccCch-----hhhHHHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGH-----VLCRQSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGh-----v~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
+|-||.+.-++++ -||+. ..-++||++|-+.+ +...||.|+.+|.....
T Consensus 4 iCWIC~~~~~e~~----~PC~C~GS~K~VHq~CL~~WIn~S-~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 4 ICWICNDVCDERN----NFCGCNEEYKVVHIKCMQLWINYS-KKKECNLCKTKYNIKKT 57 (156)
T ss_pred EEEEecCcCCCCc----ccccccCcchhHHHHHHHHHHhcC-CCcCccCCCCeEEEEEc
Confidence 6888888765543 57765 67799999998654 47899999999976543
No 101
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=75.31 E-value=2.7 Score=31.51 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=13.0
Q ss_pred CccccCCCCCcCCccc
Q 016792 361 RTFKCPYCPSDIDAAQ 376 (382)
Q Consensus 361 ~~~kCP~c~~~~~~~~ 376 (382)
+...||.|+..|...+
T Consensus 52 g~L~Cp~c~r~YPI~d 67 (68)
T PF03966_consen 52 GELICPECGREYPIRD 67 (68)
T ss_dssp TEEEETTTTEEEEEET
T ss_pred CEEEcCCCCCEEeCCC
Confidence 5899999999887653
No 102
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.20 E-value=1.3 Score=32.59 Aligned_cols=16 Identities=25% Similarity=0.729 Sum_probs=12.7
Q ss_pred CCccccCCCCCcCCcc
Q 016792 360 SRTFKCPYCPSDIDAA 375 (382)
Q Consensus 360 ~~~~kCP~c~~~~~~~ 375 (382)
.+.+.||||+..|...
T Consensus 46 ~gev~CPYC~t~y~l~ 61 (62)
T COG4391 46 EGEVVCPYCSTRYRLN 61 (62)
T ss_pred CCcEecCccccEEEec
Confidence 3479999999988653
No 103
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=74.43 E-value=92 Score=30.64 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=53.5
Q ss_pred HhhcCCCChHhhhccccCC--HHHHHHHHHHHHHHhC--cHHH------HHHHHHH-hCCCcchhhhHHHHHHHHHHHHH
Q 016792 88 LEKSFNPDISKAYRNIEFD--THTVSQIIASHFYRQG--LFEV------GDCFISE-TKESECSAAILSIFEDMYQILEA 156 (382)
Q Consensus 88 idk~f~~~l~~~~~~~~~~--~~~lnrlI~~hLlR~G--~~e~------a~~f~~E-s~~~~~~~~~~~~f~~~~~I~~~ 156 (382)
+++....++.+++.++..+ ....+.+|..|+.+.. ..+. -..|.+- +||.. ...-.|+|+.+|+..
T Consensus 90 ~n~~~~f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~---k~~~l~iE~~Qi~gy 166 (396)
T COG5109 90 GNQIYPFSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISE---KSTFLLIEFLQIEGY 166 (396)
T ss_pred HhhcCCCccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhcc---chhHhHHHHHHhcCc
Confidence 4445555665555443222 3456778999998853 2222 2222222 25543 445578999999999
Q ss_pred HHcCChHHHHHHHHhcchH
Q 016792 157 MKSGNLEPALKWAAANSDK 175 (382)
Q Consensus 157 L~~gdl~~Al~W~~~n~~~ 175 (382)
+..||.+..++|+.--...
T Consensus 167 l~kgdtesel~l~~~~~es 185 (396)
T COG5109 167 LSKGDTESELELYLVSHES 185 (396)
T ss_pred cccCCchhhhHHHHHHHHH
Confidence 9999999999999754433
No 104
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=73.52 E-value=57 Score=29.11 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhCCCcc-hhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcC-Cchhhh
Q 016792 109 TVSQIIASHFYRQGLFEVGDCFISETKESEC-SAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNG-SDLQLK 186 (382)
Q Consensus 109 ~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~-~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~-s~LeF~ 186 (382)
....-+++|+++.|..+.|.....++-.... .....+. -++-|+=+|-.||+..+..++......+.+.+ -.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~--~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDM--CLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4455799999999998877766655432210 1122222 26778889999999999999999887777633 356677
Q ss_pred chHHHHHHHHHcCCHHHHHHHHHHhcCCch
Q 016792 187 LHSLQFVEILRKGSREEALKYARANLAPFA 216 (382)
Q Consensus 187 L~~q~fIeLl~~~~~~eAl~yar~~l~~f~ 216 (382)
|..-+-+..+..++..+|-+..-.-.+.|.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 888888888888888888666665555553
No 105
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=72.73 E-value=40 Score=26.29 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhhhhH
Q 016792 25 QEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLE 71 (382)
Q Consensus 25 ~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 71 (382)
.+-++.+-++|+.|.+.++. +| |...+|++++.++.+...+..++
T Consensus 17 ~~~a~~~~~~l~~Al~~l~~-~p-dnP~~LA~~Qa~l~eyn~~RNaQ 61 (80)
T PRK15326 17 DTGVDNLQTQVTEALDKLAA-KP-SDPALLAAYQSKLSEYNLYRNAQ 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHhhc-CC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666778888888866 55 45578999999998876555444
No 106
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.71 E-value=2.7 Score=41.56 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=36.6
Q ss_pred cceeccccccccCCCCCCeeccCchh-hhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 321 SIFVCPVSKEQTSDDNPPMIMSCGHV-LCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 321 S~~~Cpi~~~~~~~~Npp~~l~cGhv-~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
|---|=||..+.-+ -++|||-|. +|..|-+.|.=. .-+||.|+.-+.
T Consensus 289 ~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q---~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQ---TNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHh---hcCCCccccchH
Confidence 45578889888776 789999996 899998888633 238999987654
No 107
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=72.01 E-value=3.2 Score=26.56 Aligned_cols=10 Identities=30% Similarity=1.009 Sum_probs=7.7
Q ss_pred ccccCCCCCc
Q 016792 362 TFKCPYCPSD 371 (382)
Q Consensus 362 ~~kCP~c~~~ 371 (382)
..+||.|+..
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 5799999763
No 108
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=71.98 E-value=2.1 Score=28.23 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=11.0
Q ss_pred CCccccCCCCCcCC
Q 016792 360 SRTFKCPYCPSDID 373 (382)
Q Consensus 360 ~~~~kCP~c~~~~~ 373 (382)
++.++||.|+..|.
T Consensus 23 ~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 23 GRKVRCPKCGHVFR 36 (37)
T ss_pred CcEEECCCCCcEee
Confidence 34899999988764
No 109
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=71.98 E-value=1.8 Score=30.16 Aligned_cols=42 Identities=24% Similarity=0.619 Sum_probs=26.3
Q ss_pred ccccccccCCCCCCeeccCch-----hhhHHHHHHHHhcCCCccccCCC
Q 016792 325 CPVSKEQTSDDNPPMIMSCGH-----VLCRQSINKMSKNHSRTFKCPYC 368 (382)
Q Consensus 325 Cpi~~~~~~~~Npp~~l~cGh-----v~~~~~l~~l~~~~~~~~kCP~c 368 (382)
|.||.+..++++ |+..||+. .+-..+|.+|.... +..+|+.|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~-~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRES-GNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHH-T-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhc-CCCcCCCC
Confidence 678888777666 89999975 34567899987653 25689887
No 110
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=71.50 E-value=2.8 Score=35.50 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=14.7
Q ss_pred ceeccccccccCCCC--CCeeccCchhhhH
Q 016792 322 IFVCPVSKEQTSDDN--PPMIMSCGHVLCR 349 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~N--pp~~l~cGhv~~~ 349 (382)
.-+||-|+..+-+-| |++.-.||.+|-.
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~ 38 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQFPP 38 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCccCc
Confidence 347888877765533 2233344444433
No 111
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.20 E-value=2.2 Score=30.70 Aligned_cols=43 Identities=26% Similarity=0.650 Sum_probs=29.6
Q ss_pred eccccccccCCCCCCeeccCchh-hhHHHHHHHHhcCCCccccCCCCCc
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHV-LCRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv-~~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
-|.||.|---+ -|.-.|||. +|-+|=.++.++. .-.||.|+..
T Consensus 9 ECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~--~g~CPiCRap 52 (62)
T KOG4172|consen 9 ECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKAL--HGCCPICRAP 52 (62)
T ss_pred ceeeeccCcch---HHHHHcchHHhHHHHHHHHHHcc--CCcCcchhhH
Confidence 35555542222 366799996 7888888888764 5699999764
No 112
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=69.72 E-value=3.6 Score=44.73 Aligned_cols=53 Identities=17% Similarity=0.401 Sum_probs=43.7
Q ss_pred eeccccccccCCCCCCeeccCchh-----hhHHHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHV-----LCRQSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv-----~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
=+|.||+.+-.++| |..=||.+. +-++||-.|...+ ++.||..|..++...++
T Consensus 13 ~~CRICr~e~~~d~-pLfhPCKC~GSIkYiH~eCL~eW~~~s-~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 13 RSCRICRTEDIRDD-PLFHPCKCSGSIKYIHRECLMEWMECS-GTKKCDICHYEYKFKDI 70 (1175)
T ss_pred hhceeecCCCCCCC-cCcccccccchhHHHHHHHHHHHHhcC-CCcceeeecceeeeeee
Confidence 48999999999888 778899864 5688999998754 47899999999887765
No 113
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=69.61 E-value=1.7 Score=42.17 Aligned_cols=41 Identities=27% Similarity=0.501 Sum_probs=25.2
Q ss_pred ccccCCCCCCeeccCchhhhHHHHHHHHh--c-CCCccccCCCCCcC
Q 016792 329 KEQTSDDNPPMIMSCGHVLCRQSINKMSK--N-HSRTFKCPYCPSDI 372 (382)
Q Consensus 329 ~~~~~~~Npp~~l~cGhv~~~~~l~~l~~--~-~~~~~kCP~c~~~~ 372 (382)
+.+.++..|-+-|.||||=+.- .|-. + +.+.-+||.|..+.
T Consensus 308 ~~~~~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 308 KRVVDEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred cccccccCCeEEEecccccccc---ccccccccCcccCcCCeeeeec
Confidence 4455555555669999997653 3311 1 12357999997654
No 114
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=69.00 E-value=39 Score=32.41 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhc--C--------------------CCC-hHHHHHHHHH
Q 016792 3 LNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSA--S--------------------HLD-DKYVLTELKR 59 (382)
Q Consensus 3 ~~~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~--~--------------------~~~-~~~~l~~l~~ 59 (382)
+..+..+.+++.|+....+.+.++.+++.++.|..++..-... . ..+ ....+.+...
T Consensus 101 l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a~~~~~k~~~~~~~sk~~~eK~~~ 180 (264)
T cd07654 101 AKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADVQAREARSDLSIFQSRTSLQKASV 180 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHH
Confidence 3456677788888888888888888888888887776644321 0 000 0111222222
Q ss_pred HHHh--hhhhhhhHhhHHHHHHHHHHHHHHHhhcCCCChHhhhccccCC
Q 016792 60 RLQD--IAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFD 106 (382)
Q Consensus 60 ~~~~--~~~~~~~~~~~k~~~~~~~k~~k~idk~f~~~l~~~~~~~~~~ 106 (382)
+.++ .....++...+.++-..|...-+..++.|..|++..++..+..
T Consensus 181 K~~~k~~~~~~k~~~akNeYll~L~~aN~~q~kYY~~dLP~lld~ld~~ 229 (264)
T cd07654 181 KLSARKAECSSKATAARNDYLLNLAATNAHQDRYYQTDLPAIIKALDGE 229 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 2221 1122366788889999999999999999999998877654443
No 115
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.92 E-value=2.9 Score=42.29 Aligned_cols=61 Identities=21% Similarity=0.569 Sum_probs=42.1
Q ss_pred ccceeccccc-cccCCCCCCeeccCchhhhHHHHHHHHhc---CCCccccC--CCCCcCCccccccc
Q 016792 320 HSIFVCPVSK-EQTSDDNPPMIMSCGHVLCRQSINKMSKN---HSRTFKCP--YCPSDIDAAQCRQL 380 (382)
Q Consensus 320 hS~~~Cpi~~-~~~~~~Npp~~l~cGhv~~~~~l~~l~~~---~~~~~kCP--~c~~~~~~~~~~~v 380 (382)
|....|+||. +-+..+.-..+..|||-+|.+|+.+.... ++..++|| -|+......++..+
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~l 210 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKL 210 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhh
Confidence 3456888888 44433222336789999999999987542 23468998 58888887777654
No 116
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=68.86 E-value=2.5 Score=40.33 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=22.9
Q ss_pred ceeccccccccCCCCCCeeccCchhhh
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVLC 348 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~~ 348 (382)
+|.||+|++.++.++..+.=++||.|.
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd 28 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFD 28 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCc
Confidence 589999999998766678889999983
No 117
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=68.73 E-value=25 Score=33.26 Aligned_cols=101 Identities=16% Similarity=0.252 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhc--CCCChHHHHHH------------------------
Q 016792 3 LNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSA--SHLDDKYVLTE------------------------ 56 (382)
Q Consensus 3 ~~~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~--~~~~~~~~l~~------------------------ 56 (382)
+..+.++.+++.|+....+.++++.+.+.+++|..++..-... +......-+.+
T Consensus 101 l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~ 180 (241)
T cd07656 101 LGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKK 180 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHH
Confidence 4567888899999999988999999999999998887654331 00000001101
Q ss_pred HHHHHHh-----hhhhhhhHhhHHHHHHHHHHHHHHHhhcCCCChHhhhccc
Q 016792 57 LKRRLQD-----IAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNI 103 (382)
Q Consensus 57 l~~~~~~-----~~~~~~~~~~~k~~~~~~~k~~k~idk~f~~~l~~~~~~~ 103 (382)
++..+.+ .....++.+.+.++-..|...-+..++.|..|++...+..
T Consensus 181 ~~~~~eK~k~k~~~~~~k~~~akNeYll~l~~aN~~~~~yy~~~lp~lld~l 232 (241)
T cd07656 181 IEKEVEKRQAKYSEAKLKCTKARNEYLLNLAAANATIHKYFVQDLSDLIDCM 232 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 1111100 0123355666777777777777778888877777665543
No 118
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=67.63 E-value=1.7 Score=43.49 Aligned_cols=43 Identities=23% Similarity=0.454 Sum_probs=0.0
Q ss_pred cCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCc
Q 016792 332 TSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDA 374 (382)
Q Consensus 332 ~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~ 374 (382)
.++.-|-|-|.||||-+.-.--.-.......-.||.|......
T Consensus 298 ~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 298 PDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp -------------------------------------------
T ss_pred ccccCceeeccccceeeecccccccccccccccCCCccccCCc
Confidence 3334455669999998875543322222236799999876544
No 119
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=67.55 E-value=3.8 Score=44.29 Aligned_cols=55 Identities=25% Similarity=0.522 Sum_probs=44.7
Q ss_pred ceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcC-CCccccCCCCCcCCccccc
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNH-SRTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~-~~~~kCP~c~~~~~~~~~~ 378 (382)
.|-||+++..++- |.-...|+|+=|.+++.-+..+. ..+..||.|.+.+..++..
T Consensus 306 SL~CPl~~~Rm~~--P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 306 SLNCPLSKMRMSL--PARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred EecCCcccceeec--CCcccccccceecchhhhHHhccCCCeeeCccCCccccccchh
Confidence 5789999999987 44559999999999998886653 3579999999988877653
No 120
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=67.42 E-value=2 Score=25.80 Aligned_cols=13 Identities=38% Similarity=1.280 Sum_probs=10.8
Q ss_pred CccccCCCCCcCC
Q 016792 361 RTFKCPYCPSDID 373 (382)
Q Consensus 361 ~~~kCP~c~~~~~ 373 (382)
..++||+|++.|.
T Consensus 13 k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 13 KPYKCPYCGKSFS 25 (26)
T ss_dssp SSEEESSSSEEES
T ss_pred CCCCCCCCcCeeC
Confidence 4799999998774
No 121
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=67.41 E-value=3 Score=40.84 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=41.7
Q ss_pred ccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcc
Q 016792 318 QFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAA 375 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~ 375 (382)
.+|..+.|++|+-.+-+ +--.--|=|.||+.||-+..... ..||.|....+-.
T Consensus 11 ~~n~~itC~LC~GYliD--ATTI~eCLHTFCkSCivk~l~~~---~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLID--ATTITECLHTFCKSCIVKYLEES---KYCPTCDIVIHKT 63 (331)
T ss_pred hcccceehhhccceeec--chhHHHHHHHHHHHHHHHHHHHh---ccCCccceeccCc
Confidence 47788999999988865 23457899999999999876553 4899998776644
No 122
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=67.27 E-value=8.6 Score=29.74 Aligned_cols=54 Identities=15% Similarity=0.370 Sum_probs=23.5
Q ss_pred cccceecccccccc--CC-CCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCCc
Q 016792 319 FHSIFVCPVSKEQT--SD-DNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDA 374 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~--~~-~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~ 374 (382)
-.+--+|-|||+.. ++ .++.+. --||--+|+.|.+-=.+.+ .--||.|+..+..
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg--~q~CpqCkt~ykr 63 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG--NQVCPQCKTRYKR 63 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS---SB-TTT--B---
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC--cccccccCCCccc
Confidence 34556899999975 33 344443 6899999999998665554 5689999987764
No 123
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.80 E-value=1.4 Score=42.58 Aligned_cols=45 Identities=29% Similarity=0.786 Sum_probs=33.1
Q ss_pred eccccccccCC---CCCCeecc--------CchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 324 VCPVSKEQTSD---DNPPMIMS--------CGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 324 ~Cpi~~~~~~~---~Npp~~l~--------cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
.|.+|....+. .=.|.++. |||.+|..+...+....+ ++||+|..
T Consensus 209 ~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~--~~cp~~~~ 264 (296)
T KOG4185|consen 209 LCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG--IKCPFCTW 264 (296)
T ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh--hcCCcccc
Confidence 35555444442 22577777 999999999999987754 89999976
No 124
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.64 E-value=4 Score=38.49 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=23.1
Q ss_pred eccCchhhhHHHHHHHHhcCCCccccCCCCCcC
Q 016792 340 IMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDI 372 (382)
Q Consensus 340 ~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~ 372 (382)
.=.|+-++...-+.++.++ +..++||||+.-.
T Consensus 200 C~GC~m~l~~~~~~~V~~~-d~iv~CP~CgRIL 231 (239)
T COG1579 200 CGGCHMKLPSQTLSKVRKK-DEIVFCPYCGRIL 231 (239)
T ss_pred ccCCeeeecHHHHHHHhcC-CCCccCCccchHH
Confidence 3456667777777888774 4589999998643
No 125
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=64.07 E-value=52 Score=30.77 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhc----------------CCCChHHHHHHHHHHHHhhhhh
Q 016792 4 NDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSA----------------SHLDDKYVLTELKRRLQDIAPL 67 (382)
Q Consensus 4 ~~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~----------------~~~~~~~~l~~l~~~~~~~~~~ 67 (382)
..+.++..+..|+......+.++.+.+.+..+..++..-... ++.-...-+.++++.+.+ ..
T Consensus 97 ~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k--~~ 174 (251)
T cd07653 97 KTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANL--KT 174 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHH--HH
Confidence 344556666666666666677777777776666666544321 000011222333333332 23
Q ss_pred hhhHhhHHHHHHHHHHHHHHHhhcCCCChHhhhc
Q 016792 68 GQLEGTQKELNIALSKYTKILEKSFNPDISKAYR 101 (382)
Q Consensus 68 ~~~~~~~k~~~~~~~k~~k~idk~f~~~l~~~~~ 101 (382)
.++.+..+++..+|.++-....+.|..+++.++.
T Consensus 175 ~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~ 208 (251)
T cd07653 175 QAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFD 208 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3555666777777777777766666666665544
No 126
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=63.92 E-value=20 Score=28.07 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCc
Q 016792 107 THTVSQIIASHFYRQGLFEVGDCFISETKESE 138 (382)
Q Consensus 107 ~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~ 138 (382)
-..++.+|.+||-=+||--|+..|..|+|...
T Consensus 18 g~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~ 49 (81)
T PF09398_consen 18 GRLINELIREYLEFNNLDYTLSVFQPESGQPE 49 (81)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred hHHHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence 35789999999999999999999999999876
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=62.87 E-value=93 Score=26.21 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchH
Q 016792 110 VSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHS 189 (382)
Q Consensus 110 lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~ 189 (382)
-.-.++..++..|.++-|....++.--.. +......+..++--.-.+..|+.+.|+..++... +.........
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~------~~~~~~~~~~ 122 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIP------DEAFKALAAE 122 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc------CcchHHHHHH
Confidence 34458899999999998888877654322 1222233444444444566899999999996632 2223333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 016792 190 LQFVEILRKGSREEALKYARA 210 (382)
Q Consensus 190 q~fIeLl~~~~~~eAl~yar~ 210 (382)
+.=--+++.|+..+|+..-++
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 444456678889998876553
No 128
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=62.74 E-value=2.9 Score=23.61 Aligned_cols=14 Identities=29% Similarity=0.928 Sum_probs=8.6
Q ss_pred cccCCCCCcCCccc
Q 016792 363 FKCPYCPSDIDAAQ 376 (382)
Q Consensus 363 ~kCP~c~~~~~~~~ 376 (382)
++||+|+..+.-..
T Consensus 1 ~~C~~C~~~~~~~~ 14 (24)
T PF13894_consen 1 FQCPICGKSFRSKS 14 (24)
T ss_dssp EE-SSTS-EESSHH
T ss_pred CCCcCCCCcCCcHH
Confidence 57999998876543
No 129
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=61.87 E-value=2.5 Score=24.18 Aligned_cols=13 Identities=31% Similarity=1.009 Sum_probs=10.1
Q ss_pred cccCCCCCcCCcc
Q 016792 363 FKCPYCPSDIDAA 375 (382)
Q Consensus 363 ~kCP~c~~~~~~~ 375 (382)
++||+|++.|...
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 5799999888654
No 130
>PHA02768 hypothetical protein; Provisional
Probab=61.84 E-value=9.5 Score=27.59 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=23.8
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCc
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDA 374 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~ 374 (382)
|.||.|++.++. .++|..=.+.-...+||..|++.|..
T Consensus 6 y~C~~CGK~Fs~--------------~~~L~~H~r~H~k~~kc~~C~k~f~~ 43 (55)
T PHA02768 6 YECPICGEIYIK--------------RKSMITHLRKHNTNLKLSNCKRISLR 43 (55)
T ss_pred cCcchhCCeecc--------------HHHHHHHHHhcCCcccCCcccceecc
Confidence 578888887754 23443322222236899999998764
No 131
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.23 E-value=1.6e+02 Score=28.39 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcchHhh
Q 016792 146 IFEDMYQILEAMKSGNLEPALKWAAANSDKLT 177 (382)
Q Consensus 146 ~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~ 177 (382)
....-..|...|.+||+..||+-+.+....+.
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~ 158 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQQLLE 158 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 33444566677778999999999998876654
No 132
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=61.19 E-value=1.3e+02 Score=30.40 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHH---cCChHHHH
Q 016792 142 AILSIFEDMYQILEAMK---SGNLEPAL 166 (382)
Q Consensus 142 ~~~~~f~~~~~I~~~L~---~gdl~~Al 166 (382)
.+.....++..|...|+ ..|++.++
T Consensus 158 ~I~~L~~~i~~l~~~L~~qI~~df~~~f 185 (383)
T PF04100_consen 158 QIAELSKRIDQLQNELKEQIFEDFEELF 185 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555566555555 24444443
No 133
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=60.35 E-value=6.4 Score=38.85 Aligned_cols=47 Identities=19% Similarity=0.537 Sum_probs=33.2
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
-+|-||-+-.|- --++||||-+|--|--++..-- .+-.||.|..+..
T Consensus 62 ~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY-~~K~C~~CrTE~e 108 (493)
T COG5236 62 MNCQICAGSTTY---SARYPCGHQICHACAVRLRALY-MQKGCPLCRTETE 108 (493)
T ss_pred ceeEEecCCceE---EEeccCCchHHHHHHHHHHHHH-hccCCCccccccc
Confidence 367777666655 4579999999999877764321 1458999998753
No 134
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=59.65 E-value=50 Score=23.45 Aligned_cols=66 Identities=24% Similarity=0.319 Sum_probs=40.6
Q ss_pred HHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhcCCchhhhHHHHHHHHHh
Q 016792 157 MKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQKLMAC 229 (382)
Q Consensus 157 L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~~~~~~eiq~lm~~ 229 (382)
+.+|+++.|++.++.. +.....+.+..+ .-..-+++.|+..+|..+..+-.... +++ .+++.+++-
T Consensus 2 l~~~~~~~A~~~~~~~---l~~~p~~~~~~~--~la~~~~~~g~~~~A~~~l~~~~~~~-~~~-~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKA---LQRNPDNPEARL--LLAQCYLKQGQYDEAEELLERLLKQD-PDN-PEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHH---HHHTTTSHHHHH--HHHHHHHHTT-HHHHHHHHHCCHGGG-TTH-HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHH---HHHCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHC-cCH-HHHHHHHhc
Confidence 6789999999998874 333333343333 23334567899999999998655443 222 566666553
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=59.57 E-value=2.7e+02 Score=30.55 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhc
Q 016792 108 HTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKL 187 (382)
Q Consensus 108 ~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L 187 (382)
....++++.-+.+.|.+|.|..+....-.-. +.....+..+..|+ .+.+.+++|+.|++.. |...-.+. .-
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L--~~~~~~eeA~~~~~~~---l~~~p~~~--~~ 156 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGV--KRQQGIEAGRAEIELY---FSGGSSSA--RE 156 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHH--HHhccHHHHHHHHHHH---hhcCCCCH--HH
Confidence 4566889999999999999888776542212 33333343333332 3468899999999875 33222333 33
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHhcCCc
Q 016792 188 HSLQFVEILRKGSREEALKYARANLAPF 215 (382)
Q Consensus 188 ~~q~fIeLl~~~~~~eAl~yar~~l~~f 215 (382)
+.+.-+.|.+.|...+|+++.++-+.+.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 4555666777788888888877776543
No 136
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=58.84 E-value=4.8 Score=26.34 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.0
Q ss_pred CCccccCCCCCcC
Q 016792 360 SRTFKCPYCPSDI 372 (382)
Q Consensus 360 ~~~~kCP~c~~~~ 372 (382)
+..++||.|+..+
T Consensus 23 g~~v~C~~C~~~f 35 (36)
T PF13717_consen 23 GRKVRCSKCGHVF 35 (36)
T ss_pred CcEEECCCCCCEe
Confidence 3478999998765
No 137
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=58.59 E-value=20 Score=30.47 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=41.4
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhCCCcc-hhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcc
Q 016792 113 IIASHFYRQGLFEVGDCFISETKESEC-SAAILSIFEDMYQILEAMKSGNLEPALKWAAANS 173 (382)
Q Consensus 113 lI~~hLlR~G~~e~a~~f~~Es~~~~~-~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~ 173 (382)
-|.+.+ ++|..+.|-..+++..-... ..+...-.....+.++-|++|++.+||+|++++-
T Consensus 7 ~I~~~I-~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 7 KIRQAI-LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HHHHHH-HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 456666 88999999888877542110 0122233345677788889999999999999964
No 138
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=58.30 E-value=79 Score=29.73 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHH
Q 016792 6 IKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALE 40 (382)
Q Consensus 6 ~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~ 40 (382)
+-.+.+++.|+....+.+.++.++...+.|..++.
T Consensus 99 l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk 133 (237)
T cd07657 99 LIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKS 133 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555444444
No 139
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=58.11 E-value=84 Score=31.13 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhh
Q 016792 107 THTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLK 186 (382)
Q Consensus 107 ~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~ 186 (382)
...+-|+|.+||-.+..-.+-.++.+|.++.. ...+. .....++|.+|+|+..+.-++..+-- ..-.-.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSL-NTVDS-----vd~Fv~dI~sG~WD~VL~~vqsLKLP-----~kkL~d 75 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSL-NTVDS-----VDGFVNDINSGHWDTVLKTVQSLKLP-----DKKLID 75 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccce-eechh-----HHHHHHhcccCchHHHHHHHHhccCc-----hhHHHH
Confidence 34678999999999999999999999998864 22221 23348899999999999988776421 122346
Q ss_pred chHHHHHHHHHcCCHHHHHHHHHH
Q 016792 187 LHSLQFVEILRKGSREEALKYARA 210 (382)
Q Consensus 187 L~~q~fIeLl~~~~~~eAl~yar~ 210 (382)
|+.|-.+|||.-.....|-..+|+
T Consensus 76 LYEqivlEliELREL~tAR~~lRQ 99 (508)
T KOG0275|consen 76 LYEQIVLELIELRELGTARSLLRQ 99 (508)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhc
Confidence 788888888877666666666664
No 140
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=57.27 E-value=3.3 Score=24.80 Aligned_cols=16 Identities=19% Similarity=0.625 Sum_probs=12.4
Q ss_pred ccccCCCCCcCCcccc
Q 016792 362 TFKCPYCPSDIDAAQC 377 (382)
Q Consensus 362 ~~kCP~c~~~~~~~~~ 377 (382)
.+.||+|+..|..+.+
T Consensus 2 l~~C~~CgR~F~~~~l 17 (25)
T PF13913_consen 2 LVPCPICGRKFNPDRL 17 (25)
T ss_pred CCcCCCCCCEECHHHH
Confidence 3689999999876654
No 141
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=57.05 E-value=6.9 Score=28.27 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=8.6
Q ss_pred ccccCCCCCcCCc
Q 016792 362 TFKCPYCPSDIDA 374 (382)
Q Consensus 362 ~~kCP~c~~~~~~ 374 (382)
.|.||+|+..+.-
T Consensus 14 ~~~Cp~cGipthc 26 (55)
T PF13824_consen 14 NFECPDCGIPTHC 26 (55)
T ss_pred CCcCCCCCCcCcc
Confidence 4778877766543
No 142
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=56.98 E-value=1.3 Score=30.09 Aligned_cols=25 Identities=32% Similarity=0.838 Sum_probs=15.8
Q ss_pred cCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 342 SCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 342 ~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
.|||++ +.+..++. .....||.|+.
T Consensus 10 ~Cg~~f--e~~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEF--EVLQSISE--DDPVPCPECGS 34 (42)
T ss_pred CCCCEE--EEEEEcCC--CCCCcCCCCCC
Confidence 577776 23344444 23689999987
No 143
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.45 E-value=1.3e+02 Score=27.99 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=68.0
Q ss_pred cccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHH-cCChHHHHHHHHhcchHhhhcC
Q 016792 102 NIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMK-SGNLEPALKWAAANSDKLTQNG 180 (382)
Q Consensus 102 ~~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~-~gdl~~Al~W~~~n~~~L~~~~ 180 (382)
.+....+.+..+=+-+++..|.++.|-.+.-+..+.. .| ..+|++.|. +|+-+-|+.+.+..++.+...
T Consensus 72 ~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~-------~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~- 141 (226)
T PF13934_consen 72 AFGIPPKYIKFIQGFWLLDHGDFEEALELLSHPSLIP-------WF--PDKILQALLRRGDPKLALRYLRAVGPPLSSP- 141 (226)
T ss_pred HhCCCHHHHHHHHHHHHhChHhHHHHHHHhCCCCCCc-------cc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCH-
Confidence 3556777888888888888888888887775554422 11 234666665 689999999999887776643
Q ss_pred CchhhhchHHHHHHHHHcCCHHHHHHHHHHhcCCc
Q 016792 181 SDLQLKLHSLQFVEILRKGSREEALKYARANLAPF 215 (382)
Q Consensus 181 s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~~f 215 (382)
+ -..-++.++.+|...||..|+|++-.+.
T Consensus 142 -----~-~~~~~~~~La~~~v~EAf~~~R~~~~~~ 170 (226)
T PF13934_consen 142 -----E-ALTLYFVALANGLVTEAFSFQRSYPDEL 170 (226)
T ss_pred -----H-HHHHHHHHHHcCCHHHHHHHHHhCchhh
Confidence 1 1222444577889999999999776643
No 144
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.25 E-value=8 Score=38.30 Aligned_cols=58 Identities=19% Similarity=0.403 Sum_probs=39.4
Q ss_pred CCCccccCCcccccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 306 QLPVPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 306 eLp~~i~Lp~~~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
+..+.++||.+ ---.||||--- +-| .|.-||||-=|..||.+-.-+. -.|-||+.+..
T Consensus 410 ~~~~~~~lp~s----Ed~lCpICyA~--pi~-Avf~PC~H~SC~~CI~qHlmN~---k~CFfCktTv~ 467 (489)
T KOG4692|consen 410 EESFNKDLPDS----EDNLCPICYAG--PIN-AVFAPCSHRSCYGCITQHLMNC---KRCFFCKTTVI 467 (489)
T ss_pred HHhhcCCCCCc----ccccCcceecc--cch-hhccCCCCchHHHHHHHHHhcC---CeeeEecceee
Confidence 34455666632 13479998531 122 5778999999999999865453 48999987654
No 145
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.24 E-value=3e+02 Score=29.34 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHH
Q 016792 141 AAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEI 195 (382)
Q Consensus 141 ~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeL 195 (382)
..+...=..+......|.+++++.|-++..+-...+......|+=++.-.++++-
T Consensus 252 ~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~ 306 (560)
T PF06160_consen 252 EEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEK 306 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445567777888899999999999999888888777777777777666653
No 146
>PF15616 TerY-C: TerY-C metal binding domain
Probab=54.22 E-value=6.4 Score=33.66 Aligned_cols=42 Identities=21% Similarity=0.573 Sum_probs=31.9
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
-||-|+.++.- ++=.||++.|-+ +...+.||-|+++..+...
T Consensus 79 gCP~CGn~~~f----a~C~CGkl~Ci~--------g~~~~~CPwCg~~g~~~~~ 120 (131)
T PF15616_consen 79 GCPHCGNQYAF----AVCGCGKLFCID--------GEGEVTCPWCGNEGSFGAG 120 (131)
T ss_pred CCCCCcChhcE----EEecCCCEEEeC--------CCCCEECCCCCCeeeeccc
Confidence 79999997643 445999999854 2347999999998876654
No 147
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=54.15 E-value=6.6 Score=28.24 Aligned_cols=33 Identities=15% Similarity=0.587 Sum_probs=20.4
Q ss_pred CeeccCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 338 PMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 338 p~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
.+.|-|++-..-..+-.-.....-+++||+|+.
T Consensus 20 r~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 20 RYALICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred ceeEECcccchhhcccccccCCceEEEcCCCCC
Confidence 566777777766665531111223799999975
No 148
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=54.14 E-value=3 Score=40.86 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=8.2
Q ss_pred ccccCCCCCc
Q 016792 362 TFKCPYCPSD 371 (382)
Q Consensus 362 ~~kCP~c~~~ 371 (382)
+.+||+|+..
T Consensus 224 R~~C~~Cg~~ 233 (305)
T TIGR01562 224 RVKCSHCEES 233 (305)
T ss_pred CccCCCCCCC
Confidence 6899999875
No 149
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=53.89 E-value=1.4 Score=35.82 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=13.8
Q ss_pred eccccccccCCCCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 324 VCPVSKEQTSDDNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
.||+|++...-+++-+. =++||++.|=++.-+.=...+.-.||.|+..+.
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l 66 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRAL 66 (99)
T ss_dssp -------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE
T ss_pred cccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEEe
Confidence 57777766654454333 466777655444433222222356777765544
No 150
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=53.23 E-value=3.2 Score=29.38 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=8.0
Q ss_pred ccccCCCCCc
Q 016792 362 TFKCPYCPSD 371 (382)
Q Consensus 362 ~~kCP~c~~~ 371 (382)
.++||.|+..
T Consensus 34 ~w~CP~C~a~ 43 (50)
T cd00730 34 DWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCc
Confidence 5899999753
No 151
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.23 E-value=2.4 Score=40.77 Aligned_cols=40 Identities=25% Similarity=0.730 Sum_probs=27.8
Q ss_pred ceeccccccccCCCCCCeeccCchhh-hHHHHHHHHhcCCCccccCCCCCc
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVL-CRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~-~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
.-.|.||.+.--+ =+.|+|||.. |-+|=++| -.||.|++.
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkrm-------~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKRM-------NECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhcccc-------ccCchHHHH
Confidence 5689999885544 5889999965 44443333 489999764
No 152
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.30 E-value=2.9e+02 Score=28.63 Aligned_cols=93 Identities=13% Similarity=0.216 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhh-hhhhhhHhhHHHHHHHHHHHHHHHhhcCCCChHhhhccccCCHHHHHHHHHHHHHHhCcHHHHHHH
Q 016792 52 YVLTELKRRLQDI-APLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCF 130 (382)
Q Consensus 52 ~~l~~l~~~~~~~-~~~~~~~~~~k~~~~~~~k~~k~idk~f~~~l~~~~~~~~~~~~~lnrlI~~hLlR~G~~e~a~~f 130 (382)
..+.++...+++- .-..++.+..+++....+..+.++++.|. ++-+++.+.|.-|.+...
T Consensus 389 qrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfa-------------------vtdellf~sakhddhvR~ 449 (521)
T KOG1937|consen 389 QRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFA-------------------VTDELLFMSAKHDDHVRL 449 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------------------HHHHHHHHHhccCHHHHH
Confidence 4445555555543 23457777778888888888888887762 333677777766555543
Q ss_pred HHHhCCCcchhhhHHHHHHHHHHHHHHH-cCChHHHHHHHHh
Q 016792 131 ISETKESECSAAILSIFEDMYQILEAMK-SGNLEPALKWAAA 171 (382)
Q Consensus 131 ~~Es~~~~~~~~~~~~f~~~~~I~~~L~-~gdl~~Al~W~~~ 171 (382)
+-+ ..........+|++.|+ .|++..++.-.+.
T Consensus 450 ayk--------llt~iH~nc~ei~E~i~~tg~~~revrdlE~ 483 (521)
T KOG1937|consen 450 AYK--------LLTRIHLNCMEILEMIRETGALKREVRDLES 483 (521)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 311 12233444567777776 5777777665543
No 153
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=52.16 E-value=11 Score=26.94 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=25.0
Q ss_pred eccCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 340 IMSCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 340 ~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
.-.|+-.++.+.+.++.++ ...+.||.|+.
T Consensus 25 C~gC~~~l~~~~~~~i~~~-~~i~~Cp~CgR 54 (56)
T PF02591_consen 25 CSGCHMELPPQELNEIRKG-DEIVFCPNCGR 54 (56)
T ss_pred cCCCCEEcCHHHHHHHHcC-CCeEECcCCCc
Confidence 4579999999999999766 34799999985
No 154
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=51.44 E-value=2.7e+02 Score=28.10 Aligned_cols=21 Identities=29% Similarity=0.830 Sum_probs=10.5
Q ss_pred chhhcccCChHHHHHHHHHHHHH
Q 016792 241 YPQLVSQTNWVTVAEELTRQFCN 263 (382)
Q Consensus 241 y~~Ll~~~~w~~l~~~F~~e~c~ 263 (382)
|..+| |..|. +...+...||.
T Consensus 264 ~~~iF-P~~W~-v~~~L~~~Fc~ 284 (383)
T PF04100_consen 264 FANIF-PPSWR-VPERLCVEFCE 284 (383)
T ss_pred ccccC-CCcCc-HHHHHHHHHHH
Confidence 45555 55663 33444445553
No 155
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=51.42 E-value=14 Score=26.25 Aligned_cols=30 Identities=13% Similarity=0.424 Sum_probs=24.6
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHH
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKM 355 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l 355 (382)
.|+||+....--. ++-+..| .+|.+|+.++
T Consensus 1 ~C~iCg~kigl~~-~~k~~DG-~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFK-RFKIKDG-YICKDCLKKL 30 (51)
T ss_pred CCCcccccccccc-ceeccCc-cchHHHHHHh
Confidence 4999998876544 3678999 6999999998
No 156
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.04 E-value=3.6e+02 Score=29.41 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhcCCchhhhHHHHH
Q 016792 145 SIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLAPFASNHVNEIQ 224 (382)
Q Consensus 145 ~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~~~~~~eiq 224 (382)
+.-....+-+..+.+++++|+..-....+.. .-+|+=.+..|+.- +-.+.+..|...+.....+.+
T Consensus 309 eact~aA~al~q~~~~~ldp~~l~m~Avkdq------r~eleklk~~Fvrr--------lssfLnnlF~~l~d~~ssd~~ 374 (867)
T KOG2148|consen 309 EACTWAAKALRQLMNPNLDPIYLNMRAVKDQ------RAELEKLKATFVRR--------LSSFLNNLFASLGDFLSSDKS 374 (867)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHH--------HHHHHHHHHHHhcchhhhhhH
Confidence 4445566667777899999998777655422 22344334444442 233444444444332222333
Q ss_pred HHHHhHcccCCC----CCCCchhhcc--cCChHHHHHHHHHHHHHHhCC
Q 016792 225 KLMACLIWARKL----ESCPYPQLVS--QTNWVTVAEELTRQFCNLVGQ 267 (382)
Q Consensus 225 ~lm~~L~f~~~~----~~spy~~Ll~--~~~w~~l~~~F~~e~c~l~gl 267 (382)
.-.+-|..+.-. ..+||++|+. .....++.+-.++.||..+++
T Consensus 375 ~hs~eL~lPnhs~~~r~l~pya~Lm~wlK~~d~k~~~~l~k~Y~dslnl 423 (867)
T KOG2148|consen 375 YHSTELTLPNHSDLHRKLRPYARLMQWLKGLDKKCYGGLRKAYCDSLNL 423 (867)
T ss_pred hhhhccccCCchHHHHhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHH
Confidence 333333332111 2357777751 112233445556666655443
No 157
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=50.44 E-value=1.1e+02 Score=27.36 Aligned_cols=85 Identities=26% Similarity=0.369 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhh
Q 016792 107 THTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLK 186 (382)
Q Consensus 107 ~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~ 186 (382)
...+..++++-|.+.|.+..-..|..-.-+.+ +..+.-....+ |...|+ ..+.+-++-..
T Consensus 28 ~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~D-Sk~lA~~LLs~---------~~~~~~----------~~Ql~lDMLkR 87 (167)
T PF07035_consen 28 QHELYELLIDLLIRNGQFSQLHQLLQYHVIPD-SKPLACQLLSL---------GNQYPP----------AYQLGLDMLKR 87 (167)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC-cHHHHHHHHHh---------HccChH----------HHHHHHHHHHH
Confidence 35689999999999999999998887666655 33332222111 221121 11111222222
Q ss_pred ch--HHHHHH-HHHcCCHHHHHHHHHHh
Q 016792 187 LH--SLQFVE-ILRKGSREEALKYARAN 211 (382)
Q Consensus 187 L~--~q~fIe-Ll~~~~~~eAl~yar~~ 211 (382)
|. --..++ |+..|++.+|+.|||+.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 22 223455 78899999999999973
No 158
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=48.18 E-value=3.1e+02 Score=27.76 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHH---hCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHH-------cCChHHHHHHHHhc
Q 016792 107 THTVSQIIASHFYR---QGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMK-------SGNLEPALKWAAAN 172 (382)
Q Consensus 107 ~~~lnrlI~~hLlR---~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~-------~gdl~~Al~W~~~n 172 (382)
...+....|-.|.| .|..+-|.......-... .....+.+--+.+|-+++- ...++.||+|-.+-
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 45677788888888 888877777665521111 1333445555666666652 12467777777654
No 159
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.11 E-value=9.4 Score=38.33 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=43.8
Q ss_pred ccccceeccccccccCCCCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccccc
Q 016792 318 QFHSIFVCPVSKEQTSDDNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQ 379 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~~ 379 (382)
.-.-.+-|||....++..---|. -.-|+|||-+++++|.-+. ...|.-.+-+-|+..|+..
T Consensus 97 ns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~-knwkdLltdepFtR~DiIt 158 (518)
T KOG0883|consen 97 NSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKT-KNWKDLLTDEPFTRADIIT 158 (518)
T ss_pred CCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcch-hhHHHhhccCCcchhceee
Confidence 33457889999999987543333 4899999999999996543 2466666666677666654
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=48.00 E-value=94 Score=21.86 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=35.7
Q ss_pred HHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhc
Q 016792 114 IASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAAN 172 (382)
Q Consensus 114 I~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n 172 (382)
.+..++..|.++.|....++.-... +...+....+..+. ...|+++.|++|.++-
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~--~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRIL--YQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHH--HHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHH
Confidence 4678899999999988887764333 33333333333333 2679999999998753
No 161
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=47.87 E-value=29 Score=27.04 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=40.5
Q ss_pred ccccceeccccccccCC-CCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 318 QFHSIFVCPVSKEQTSD-DNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~~~-~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
+-|=-=.||-|.--|+. ++-|++ =-|.|.|-.-|+.++.+. +-.||.|.+++...+.
T Consensus 27 Rnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T---k~~CPld~q~w~~~~~ 85 (88)
T COG5194 27 RNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT---KGVCPLDRQTWVLADG 85 (88)
T ss_pred hccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh---CCCCCCCCceeEEecc
Confidence 33444456666655543 455665 489999999999999755 3589999998876654
No 162
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=47.77 E-value=7.4 Score=37.85 Aligned_cols=28 Identities=29% Similarity=0.715 Sum_probs=20.6
Q ss_pred eeccCchhhhHHHHHHHHhcCCCccccCCCCCc
Q 016792 339 MIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 339 ~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
.|+||.||||.+|-..=. .-.||.|-..
T Consensus 105 RmIPCkHvFCl~CAr~~~-----dK~Cp~C~d~ 132 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARSDS-----DKICPLCDDR 132 (389)
T ss_pred cccccchhhhhhhhhcCc-----cccCcCcccH
Confidence 478999999999875211 3479999654
No 163
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=47.50 E-value=13 Score=43.33 Aligned_cols=50 Identities=20% Similarity=0.580 Sum_probs=37.9
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHHHhcC--C-----CccccCCCCCcCC
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNH--S-----RTFKCPYCPSDID 373 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~--~-----~~~kCP~c~~~~~ 373 (382)
.|-||-.+--..-|.+.|.|||++-..|..++..+. + +-+.||.|...+.
T Consensus 3488 mCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3488 MCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred eEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 566666554445678889999999999999987652 1 4578999987765
No 164
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.39 E-value=1.3e+02 Score=28.59 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=57.7
Q ss_pred HHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHh--------------hcC--CCChHHHHHHHHHHHHhhhhhhhhH
Q 016792 8 DAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVK--------------SAS--HLDDKYVLTELKRRLQDIAPLGQLE 71 (382)
Q Consensus 8 ~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~--------------~~~--~~~~~~~l~~l~~~~~~~~~~~~~~ 71 (382)
.+++...|+.-....++++.++..+..|+.++..-. .++ +...+.-+.++++.+.. ....++
T Consensus 102 ~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~--~~q~~e 179 (252)
T cd07675 102 HDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNL--RTHMAD 179 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHH--HHHHHH
Confidence 344444444434455566666666666666555443 211 11123444566665543 344556
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCChHhhhcc-ccCCHHHHH
Q 016792 72 GTQKELNIALSKYTKILEKSFNPDISKAYRN-IEFDTHTVS 111 (382)
Q Consensus 72 ~~~k~~~~~~~k~~k~idk~f~~~l~~~~~~-~~~~~~~ln 111 (382)
+...++-..|.++.+.=++.|..+++.+++. -+++..++.
T Consensus 180 ~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~ 220 (252)
T cd07675 180 ESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTV 220 (252)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888787888777653 234444433
No 165
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=46.82 E-value=8.2 Score=27.58 Aligned_cols=12 Identities=42% Similarity=1.240 Sum_probs=9.3
Q ss_pred cccCCCCCcCCc
Q 016792 363 FKCPYCPSDIDA 374 (382)
Q Consensus 363 ~kCP~c~~~~~~ 374 (382)
+.||||+..+.+
T Consensus 1 i~CPyCge~~~~ 12 (52)
T PF14255_consen 1 IQCPYCGEPIEI 12 (52)
T ss_pred CCCCCCCCeeEE
Confidence 479999987764
No 166
>PLN02189 cellulose synthase
Probab=46.60 E-value=14 Score=41.79 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=38.5
Q ss_pred cccceeccccccccC--CC-CCCeec-cCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 319 FHSIFVCPVSKEQTS--DD-NPPMIM-SCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~~--~~-Npp~~l-~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
-.+.-+|.|||+... .+ .|.|.= -||.-+|+.|.+-=.+.+ .--||.|++.|.
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg--~q~CpqCkt~Y~ 87 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREG--TQNCPQCKTRYK 87 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcC--CccCcccCCchh
Confidence 344559999999753 33 344443 599999999996655554 569999999887
No 167
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=46.55 E-value=6.3 Score=26.58 Aligned_cols=11 Identities=36% Similarity=1.083 Sum_probs=9.1
Q ss_pred ccccCCCCCcC
Q 016792 362 TFKCPYCPSDI 372 (382)
Q Consensus 362 ~~kCP~c~~~~ 372 (382)
...||||+..|
T Consensus 29 ~~~CpYCg~~y 39 (40)
T PF10276_consen 29 PVVCPYCGTRY 39 (40)
T ss_dssp EEEETTTTEEE
T ss_pred eEECCCCCCEE
Confidence 58999998765
No 168
>PF12773 DZR: Double zinc ribbon
Probab=46.37 E-value=19 Score=24.78 Aligned_cols=41 Identities=24% Similarity=0.503 Sum_probs=23.8
Q ss_pred ccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCc
Q 016792 325 CPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDA 374 (382)
Q Consensus 325 Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~ 374 (382)
||-|+.+..++. -+--.||..+. ........||.|+.....
T Consensus 1 Cp~Cg~~~~~~~-~fC~~CG~~l~--------~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 1 CPHCGTPNPDDA-KFCPHCGTPLP--------PPDQSKKICPNCGAENPP 41 (50)
T ss_pred CCCcCCcCCccc-cCChhhcCChh--------hccCCCCCCcCCcCCCcC
Confidence 666776654432 34456666665 122235789988887544
No 169
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=45.93 E-value=1.7e+02 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=16.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHhhc
Q 016792 69 QLEGTQKELNIALSKYTKILEKS 91 (382)
Q Consensus 69 ~~~~~~k~~~~~~~k~~k~idk~ 91 (382)
...+..+.+..+|..++|+||+.
T Consensus 78 ~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 78 AQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556677777888888888863
No 170
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=45.92 E-value=5 Score=39.36 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=7.8
Q ss_pred ccccCCCCCc
Q 016792 362 TFKCPYCPSD 371 (382)
Q Consensus 362 ~~kCP~c~~~ 371 (382)
+.+||+|+..
T Consensus 226 R~~C~~Cg~~ 235 (309)
T PRK03564 226 RVKCSNCEQS 235 (309)
T ss_pred CccCCCCCCC
Confidence 6789999863
No 171
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=45.62 E-value=16 Score=32.95 Aligned_cols=36 Identities=19% Similarity=0.561 Sum_probs=0.0
Q ss_pred ccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccc
Q 016792 320 HSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQ 376 (382)
Q Consensus 320 hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~ 376 (382)
+-.++||-|+..++- .+++. ..|.||.|+......|
T Consensus 115 ~~~Y~Cp~C~~rytf--------------~eA~~-------~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 115 NMFFFCPNCHIRFTF--------------DEAME-------YGFRCPQCGEMLEEYD 150 (178)
T ss_pred CCEEECCCCCcEEeH--------------HHHhh-------cCCcCCCCCCCCeecc
No 172
>PLN02436 cellulose synthase A
Probab=45.41 E-value=17 Score=41.16 Aligned_cols=55 Identities=20% Similarity=0.436 Sum_probs=40.3
Q ss_pred cccccceecccccccc--CCCCCC-ee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 317 FQFHSIFVCPVSKEQT--SDDNPP-MI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 317 ~~~hS~~~Cpi~~~~~--~~~Npp-~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
.+-.+.=+|.|||+.. +.+.-| |. =-||.-+|+.|.+--.+.+ .-.||.|+..|.
T Consensus 31 ~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg--~~~Cpqckt~Y~ 89 (1094)
T PLN02436 31 VQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREG--NQACPQCKTRYK 89 (1094)
T ss_pred ccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcC--CccCcccCCchh
Confidence 3445566999999974 444434 44 4699999999996555554 569999999887
No 173
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=45.40 E-value=3.5e+02 Score=27.56 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcCCCChHh----hhccccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHH
Q 016792 81 LSKYTKILEKSFNPDISK----AYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEA 156 (382)
Q Consensus 81 ~~k~~k~idk~f~~~l~~----~~~~~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~ 156 (382)
+..+-+.+.+.|...... .........++|-..+..++-..|.++.|..+.++..... +... - -+-+ -.
T Consensus 138 ~~~fi~~~~~~~~~G~~lG~~~~i~~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-pev~-~---~LA~--v~ 210 (395)
T PF09295_consen 138 LNNFIKLFPKLFERGWKLGSDPEIQVPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD-PEVA-V---LLAR--VY 210 (395)
T ss_pred HHHHHHHHHHHhhcccccCCCCccCCCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-CcHH-H---HHHH--HH
Confidence 566777777777532211 1122344467888888999999999999999998876655 2211 1 1111 12
Q ss_pred HHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHH
Q 016792 157 MKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARA 210 (382)
Q Consensus 157 L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~ 210 (382)
+..++-..|++++++. |.+...+ ..|...|.=-|+..++...|+..|++
T Consensus 211 l~~~~E~~AI~ll~~a---L~~~p~d--~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 211 LLMNEEVEAIRLLNEA---LKENPQD--SELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred HhcCcHHHHHHHHHHH---HHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456667888888764 4332222 77777777778899999999999996
No 174
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.35 E-value=1.9e+02 Score=24.40 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCh--------------HHHHHHHHHHHHhh-hhhhhhHhhHHHHHHHHHHHHHHHhh
Q 016792 26 EVIDLIVQEIEKALETVKSASHLDD--------------KYVLTELKRRLQDI-APLGQLEGTQKELNIALSKYTKILEK 90 (382)
Q Consensus 26 ~~id~~~~~l~~~~~~~~~~~~~~~--------------~~~l~~l~~~~~~~-~~~~~~~~~~k~~~~~~~k~~k~idk 90 (382)
+.|+.-+++++.|.++|...+..++ +.++++|...++-+ -.++.+++..+.+..-+.++...|.+
T Consensus 30 ~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 30 QQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778888888888877432221 35555666655433 23445555555555555555555555
Q ss_pred cCC
Q 016792 91 SFN 93 (382)
Q Consensus 91 ~f~ 93 (382)
.|.
T Consensus 110 ~l~ 112 (119)
T COG1382 110 ALG 112 (119)
T ss_pred Hhh
Confidence 543
No 175
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.31 E-value=13 Score=34.93 Aligned_cols=34 Identities=24% Similarity=0.518 Sum_probs=24.7
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHh
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSK 357 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~ 357 (382)
..|-.|+---+ .-|.....|+||+|..|...-..
T Consensus 4 VhCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 4 VHCNKCFRFPS-QDPFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred EEeccccccCC-CCceeeeechhhhhhhhcccCCc
Confidence 35666666555 45678889999999999875443
No 176
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=45.05 E-value=2e+02 Score=30.48 Aligned_cols=98 Identities=14% Similarity=0.173 Sum_probs=59.2
Q ss_pred ccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcc----hhhhHH-HHHHHHHHHHHHHcCChHHHHHHHHhcchHhh
Q 016792 103 IEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESEC----SAAILS-IFEDMYQILEAMKSGNLEPALKWAAANSDKLT 177 (382)
Q Consensus 103 ~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~----~~~~~~-~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~ 177 (382)
.+.....||--.+-|++|.|..+.|...+.-.-.... +..+.+ ..-+...=..-.+.|++..||.-+........
T Consensus 257 LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 257 LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5556788999999999999999888877765432220 111111 11112222333567999999998877654433
Q ss_pred hc-CCchhhhchHH------HHHHHHHcCC
Q 016792 178 QN-GSDLQLKLHSL------QFVEILRKGS 200 (382)
Q Consensus 178 ~~-~s~LeF~L~~q------~fIeLl~~~~ 200 (382)
.. ...+.|.-+.+ -|++||+-.|
T Consensus 337 ~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed 366 (517)
T PF12569_consen 337 DFEEDQFDFHSYCLRKMTLRAYVDMLRWED 366 (517)
T ss_pred HHhcccccHHHHHHhhccHHHHHHHHHHHH
Confidence 32 23455655444 4777777443
No 177
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.26 E-value=1.5e+02 Score=28.40 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=59.6
Q ss_pred HHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH---------------------HHHH---HH-Hhh-hh
Q 016792 13 VAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLT---------------------ELKR---RL-QDI-AP 66 (382)
Q Consensus 13 ~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~---------------------~l~~---~~-~~~-~~ 66 (382)
+.||-.....++++.+.+.+.+|..++..-... -.+...+-. .+++ +. ... ..
T Consensus 110 ~~KK~~e~~~~lQ~eL~~~~keL~ksKK~Y~~~-~~ea~~A~~K~~e~e~k~~K~~~~~~~sk~~~eK~~~K~~~~~~~~ 188 (263)
T cd07678 110 VLKKSTEQLQKAQAELLETVKELSKSKKLYGQL-ERVSEVAKEKAADVEARLNKSDHGIFHSKASLQKLSAKFSAQSAEY 188 (263)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHH
Confidence 556655566667777777777777766654331 001111111 1111 11 000 11
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHhhcCCCChHhhhccccCCHHHHHHHHHHHHHHhC
Q 016792 67 LGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQG 122 (382)
Q Consensus 67 ~~~~~~~~k~~~~~~~k~~k~idk~f~~~l~~~~~~~~~~~~~lnrlI~~hLlR~G 122 (382)
..++.+.+.++-.+|...-+..++.|..+++...+..+ ..++.-+++||.-.+
T Consensus 189 ~~k~~~arNeYll~L~aaNa~q~~YY~~dLP~lld~lD---~~~~~~~~e~l~~~~ 241 (263)
T cd07678 189 SQQLQAARNEYLLNLVAANAHLDHYYQEELPAIMKALD---GDLYERLRDPLTSLS 241 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---hhHHHHHHHHHHHHH
Confidence 23666777888888888888888888888877666552 224445666665533
No 178
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=44.19 E-value=7.2 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 350 QSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 350 ~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
+.+..|.... -.||.|+..+....-
T Consensus 11 k~i~~l~~~~---~~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 11 KYIEELKEAK---GCCPLCGRPLDEEHR 35 (54)
T ss_dssp HHHHHHTT-S---EE-TTT--EE-HHHH
T ss_pred HHHHHHhcCC---CcCCCCCCCCCHHHH
Confidence 3445554332 399999998876543
No 179
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=43.70 E-value=7.9 Score=44.37 Aligned_cols=43 Identities=30% Similarity=0.585 Sum_probs=36.6
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
++|++|++.+ .|--+...|||-+|..|..-+.... .+||.|..
T Consensus 1154 ~~c~ic~dil--~~~~~I~~cgh~~c~~c~~~~l~~~---s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDIL--RNQGGIAGCGHEPCCRCDELWLYAS---SRCPICKS 1196 (1394)
T ss_pred cchHHHHHHH--HhcCCeeeechhHhhhHHHHHHHHh---ccCcchhh
Confidence 3999999998 5567889999999999999988763 58999874
No 180
>PRK00420 hypothetical protein; Validated
Probab=43.58 E-value=16 Score=30.48 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=8.5
Q ss_pred cccceecccccccc
Q 016792 319 FHSIFVCPVSKEQT 332 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~ 332 (382)
.+....||+|++..
T Consensus 37 k~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 37 KDGEVVCPVHGKVY 50 (112)
T ss_pred CCCceECCCCCCee
Confidence 46666666666643
No 181
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=43.35 E-value=17 Score=32.48 Aligned_cols=25 Identities=28% Similarity=0.670 Sum_probs=16.9
Q ss_pred ceeccccccccCCCCCCeeccCchh
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHV 346 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv 346 (382)
+++|||||-..-+++|-+.=-|||.
T Consensus 134 ~~vC~vCGy~~~ge~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGEAPEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCCCCCcCCCCCCh
Confidence 8999999887776554344445544
No 182
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=43.27 E-value=11 Score=27.15 Aligned_cols=15 Identities=33% Similarity=0.986 Sum_probs=9.8
Q ss_pred ccccCCCCCcCCccc
Q 016792 362 TFKCPYCPSDIDAAQ 376 (382)
Q Consensus 362 ~~kCP~c~~~~~~~~ 376 (382)
.|+||.|+.++...+
T Consensus 2 ~~~CP~CG~~iev~~ 16 (54)
T TIGR01206 2 QFECPDCGAEIELEN 16 (54)
T ss_pred ccCCCCCCCEEecCC
Confidence 367777777766543
No 183
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=42.83 E-value=17 Score=34.83 Aligned_cols=57 Identities=18% Similarity=0.411 Sum_probs=27.1
Q ss_pred cccc-ceeccccccccC-------------CCCCCeeccCchhhhHHHHHHH--Hhc-CCCccccCCCCCcCCc
Q 016792 318 QFHS-IFVCPVSKEQTS-------------DDNPPMIMSCGHVLCRQSINKM--SKN-HSRTFKCPYCPSDIDA 374 (382)
Q Consensus 318 ~~hS-~~~Cpi~~~~~~-------------~~Npp~~l~cGhv~~~~~l~~l--~~~-~~~~~kCP~c~~~~~~ 374 (382)
+.|. -..|+|||+-++ .|-|...=-||-.|..++=.+- ... +...++|+.|++.|..
T Consensus 182 rTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 182 RTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred hccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence 4455 566666666543 2333333355555554432221 111 1235666666666543
No 184
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.07 E-value=30 Score=32.25 Aligned_cols=50 Identities=18% Similarity=0.504 Sum_probs=37.4
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHHHhcC-----CCccccCCCCCcCCc
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNH-----SRTFKCPYCPSDIDA 374 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~-----~~~~kCP~c~~~~~~ 374 (382)
-|..|+....... -+.|-|=|++--+||+..+.+- -..+.||-|..++-.
T Consensus 52 NC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 52 NCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 4777776554332 6789999999999999987652 134899999987643
No 185
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=42.06 E-value=3.2e+02 Score=26.94 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHhh-hhhhhhHhhHHHHHHHHH
Q 016792 5 DIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSA-SHLDDKYVLTELKRRLQDI-APLGQLEGTQKELNIALS 82 (382)
Q Consensus 5 ~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~k~~~~~~~ 82 (382)
-+.+|+|||..=+.. --..++..|...+++++.. .+.....-+.+|.+.++++ +-...+..-.+=-...+.
T Consensus 52 ~Ld~ELEKv~~F~le-------k~~el~~Rl~~L~e~~~~~~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~ 124 (310)
T KOG1161|consen 52 LLDAELEKVNGFQLE-------KESELIIRLKELEEKIDALSLEPPSAEEMKELREELVDFHGEMVLLENFSRLNYTGFA 124 (310)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456677777554333 2234455666677777542 1112334455566655544 223344444444456788
Q ss_pred HHHHHHhhcCCCChHhhhc----c-ccCCHHHHHHHHH
Q 016792 83 KYTKILEKSFNPDISKAYR----N-IEFDTHTVSQIIA 115 (382)
Q Consensus 83 k~~k~idk~f~~~l~~~~~----~-~~~~~~~lnrlI~ 115 (382)
|+-|.-||.+...+...+. . .-+..+.++++|.
T Consensus 125 KILKK~DKrtg~~l~~~f~~~l~~~Pf~~~e~~~~Lv~ 162 (310)
T KOG1161|consen 125 KILKKHDKRTGYRLRPYFQVRLLHQPFFTTEQLFRLVY 162 (310)
T ss_pred HHHHHHhcccccccccHHHHHHHhCCCchhhhHHHHHH
Confidence 9999999998866554442 2 2235566667665
No 186
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=41.78 E-value=4 Score=28.61 Aligned_cols=25 Identities=36% Similarity=0.756 Sum_probs=14.2
Q ss_pred cCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 342 SCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 342 ~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
.|||+|.. +..+.. .....||.|+.
T Consensus 10 ~Cg~~fe~--~~~~~~--~~~~~CP~Cg~ 34 (52)
T TIGR02605 10 ACGHRFEV--LQKMSD--DPLATCPECGG 34 (52)
T ss_pred CCCCEeEE--EEecCC--CCCCCCCCCCC
Confidence 56776642 222222 23578999997
No 187
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=41.49 E-value=9.8 Score=26.13 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=9.1
Q ss_pred ccccCCCCCcCC
Q 016792 362 TFKCPYCPSDID 373 (382)
Q Consensus 362 ~~kCP~c~~~~~ 373 (382)
.++||+|+-..-
T Consensus 19 ~irC~~CG~rIl 30 (44)
T smart00659 19 VVRCRECGYRIL 30 (44)
T ss_pred ceECCCCCceEE
Confidence 689999986543
No 188
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.40 E-value=10 Score=28.14 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=9.4
Q ss_pred cceeccccccccCC
Q 016792 321 SIFVCPVSKEQTSD 334 (382)
Q Consensus 321 S~~~Cpi~~~~~~~ 334 (382)
+.=.||.||.....
T Consensus 27 TSq~C~~CG~~~~~ 40 (69)
T PF07282_consen 27 TSQTCPRCGHRNKK 40 (69)
T ss_pred CccCccCccccccc
Confidence 56678887775543
No 189
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=41.05 E-value=2.4e+02 Score=27.10 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhch
Q 016792 109 TVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLH 188 (382)
Q Consensus 109 ~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~ 188 (382)
......+.-+..+|.++-|....++.-... +........+..|. ...|+++.|++|+...-+.... ...+....+
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~--~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~ 189 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVL--EMQGRFKEGIAFMESWRDTWDC-SSMLRGHNW 189 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHH--HHcCCHHHHHHHHHhhhhccCC-CcchhHHHH
Confidence 344567778899999998888777653222 22222222233333 3479999999999876432211 222222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhc
Q 016792 189 SLQFVEILRKGSREEALKYARANL 212 (382)
Q Consensus 189 ~q~fIeLl~~~~~~eAl~yar~~l 212 (382)
..--.-++..|+..+|+.+.++.+
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh
Confidence 233334567899999999998865
No 190
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=40.95 E-value=11 Score=26.94 Aligned_cols=7 Identities=57% Similarity=1.564 Sum_probs=5.6
Q ss_pred ccccCCC
Q 016792 362 TFKCPYC 368 (382)
Q Consensus 362 ~~kCP~c 368 (382)
.-.||||
T Consensus 49 ~~~CP~C 55 (55)
T PF14311_consen 49 GKGCPYC 55 (55)
T ss_pred CCCCCCC
Confidence 3589998
No 191
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.85 E-value=2.6e+02 Score=25.85 Aligned_cols=100 Identities=13% Similarity=0.196 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhh-HHHHHHHHHHHHHHHcCChHHHHH-HH---HhcchHhhhcC--
Q 016792 108 HTVSQIIASHFYRQGLFEVGDCFISETKESECSAAI-LSIFEDMYQILEAMKSGNLEPALK-WA---AANSDKLTQNG-- 180 (382)
Q Consensus 108 ~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~-~~~f~~~~~I~~~L~~gdl~~Al~-W~---~~n~~~L~~~~-- 180 (382)
+.++.++-+||+-.|+..+-..|-.|...+. +... .+. -+.+.-++|..+|++..-+ |- +.....|+..+
T Consensus 6 ~~tDelvReYL~frgf~~tLkalD~E~~~~K-e~~frvdr--ivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~ 82 (241)
T KOG1333|consen 6 ERTDELVREYLLFRGFTHTLKALDAEIKADK-EKGFRVDR--IVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRP 82 (241)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhh-hcCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4577899999999999888887776665433 1110 010 1223355666777765433 22 22334454433
Q ss_pred --CchhhhchHHHHHHHHHcCCHHHHHHHHHH
Q 016792 181 --SDLQLKLHSLQFVEILRKGSREEALKYARA 210 (382)
Q Consensus 181 --s~LeF~L~~q~fIeLl~~~~~~eAl~yar~ 210 (382)
..||=.|.+.-.+.-+..+.+..|=+|.++
T Consensus 83 ~~~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K 114 (241)
T KOG1333|consen 83 TIHKLETSLFRFYLVYTIQTNRNDKAQEFFAK 114 (241)
T ss_pred HHHHHHHHHHHHHHhhhhhcCChHHHHHHHHH
Confidence 357777888888888888888888777774
No 192
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.47 E-value=3.1e+02 Score=31.05 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCC---------HHHHHHHHHHhcCCch-hhh
Q 016792 150 MYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGS---------REEALKYARANLAPFA-SNH 219 (382)
Q Consensus 150 ~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~---------~~eAl~yar~~l~~f~-~~~ 219 (382)
++++..+|-.-+.+-++.-.. .++++......+ =.||+|++.+. +..+|.|.+.-++-+. ..-
T Consensus 680 L~q~e~al~~c~vdvl~ka~~-~y~emsahEk~l------D~~ieLLkk~qlDEntn~e~i~k~l~yfq~m~s~hl~~ql 752 (1243)
T KOG0971|consen 680 LHQYEHALSQCSVDVLKKAGS-LYPEMSAHEKSL------DFLIELLKKDQLDENTNVEPITKALKYFQHLYSIHLAEQL 752 (1243)
T ss_pred HHHHHHhhccCCHHHHHHHhh-ccchhhHHHHHH------HHHHHHHhhcccccccCcchHHHHHHHHHHHHHHhccccc
Confidence 455555555555555444332 233333222222 24889999873 5679999986544432 223
Q ss_pred HHHHHHHHHhHcc
Q 016792 220 VNEIQKLMACLIW 232 (382)
Q Consensus 220 ~~eiq~lm~~L~f 232 (382)
.++++.+..++++
T Consensus 753 lde~q~~~d~ias 765 (1243)
T KOG0971|consen 753 LDETQQLADHIAS 765 (1243)
T ss_pred hhHHHHHHHHHHH
Confidence 3455544444443
No 193
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.42 E-value=16 Score=34.49 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=25.0
Q ss_pred eccccccccCCCCCCeeccCchhhhHHHHHHH
Q 016792 324 VCPVSKEQTSDDNPPMIMSCGHVLCRQSINKM 355 (382)
Q Consensus 324 ~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l 355 (382)
-|..|-+.+-+ ||.-|-||+|+++||...
T Consensus 45 cCsLtLqPc~d---Pvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 45 CCSLTLQPCRD---PVITPDGYLFDREAILEY 73 (303)
T ss_pred eeeeecccccC---CccCCCCeeeeHHHHHHH
Confidence 67888887766 999999999999999874
No 194
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=40.28 E-value=41 Score=21.71 Aligned_cols=18 Identities=44% Similarity=0.828 Sum_probs=14.6
Q ss_pred HHHHHHH--cCChHHHHHHH
Q 016792 152 QILEAMK--SGNLEPALKWA 169 (382)
Q Consensus 152 ~I~~~L~--~gdl~~Al~W~ 169 (382)
..+.+|+ +||++.|++|+
T Consensus 18 ~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHhC
Confidence 5567776 58999999996
No 195
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=39.87 E-value=5.7 Score=40.21 Aligned_cols=38 Identities=21% Similarity=0.700 Sum_probs=28.2
Q ss_pred cceeccccccccCCCCCCeec---cCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 321 SIFVCPVSKEQTSDDNPPMIM---SCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 321 S~~~Cpi~~~~~~~~Npp~~l---~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
--|+|-.|++++.| |++| -|-.+. .-.++||.|.+.|+
T Consensus 266 GdyiCqLCK~kYeD---~F~LAQHrC~RIV------------~vEYrCPEC~KVFs 306 (500)
T KOG3993|consen 266 GDYICQLCKEKYED---AFALAQHRCPRIV------------HVEYRCPECDKVFS 306 (500)
T ss_pred HHHHHHHHHHhhhh---HHHHhhccCCeeE------------EeeecCCccccccc
Confidence 36899999999988 7776 444443 12589999999886
No 196
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=39.77 E-value=1.3e+02 Score=20.97 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=45.3
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHH
Q 016792 113 IIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQF 192 (382)
Q Consensus 113 lI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~f 192 (382)
.++..+.+.|.++-|....++.--.. +.....+..+..+ ....|+.+.|+++++.-...... .. ..+...-
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~~ 75 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAA--YYKLGKYEEALEDYEKALELDPD-NA----KAYYNLG 75 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCCCc-ch----hHHHHHH
Confidence 35566677888887777766652212 1111222222222 23358889999988764221111 11 1222222
Q ss_pred HHHHHcCCHHHHHHHHHHh
Q 016792 193 VEILRKGSREEALKYARAN 211 (382)
Q Consensus 193 IeLl~~~~~~eAl~yar~~ 211 (382)
.-+...|+..+|..+...-
T Consensus 76 ~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 2234456777777777653
No 197
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=39.69 E-value=3.7e+02 Score=26.26 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhh
Q 016792 11 DRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKS 44 (382)
Q Consensus 11 ~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~ 44 (382)
.+..+.|...+..++..+...+..|..+|.....
T Consensus 5 tq~LqeQ~~~F~aahaqm~sav~qL~~~r~~tee 38 (324)
T PF12126_consen 5 TQALQEQDGAFGAAHAQMRSAVSQLGRARADTEE 38 (324)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445666677777888888888888888876655
No 198
>PRK04098 sec-independent translocase; Provisional
Probab=39.65 E-value=2.1e+02 Score=25.31 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhh-------hhHhhHH
Q 016792 3 LNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLG-------QLEGTQK 75 (382)
Q Consensus 3 ~~~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-------~~~~~~k 75 (382)
++.+-+.+-+..++++...+.....+++.+. +.+.+++... .+..+......++..-.++ .+.+..+
T Consensus 25 LP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k-----~k~~l~~~~~~l~~~~~~eel~~~~~~~~~~~~ 98 (158)
T PRK04098 25 LPQAMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALK-----YKKEFESAVESLKKKLKFEELDDLKITAENEIK 98 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHH-----HHHHHHHHHHHHHhccChHHHHHHhhhhhhcch
Confidence 4567788888888888888888888888774 3444444433 1222333333332211222 3334446
Q ss_pred HHHHHHHHHHHHHhh
Q 016792 76 ELNIALSKYTKILEK 90 (382)
Q Consensus 76 ~~~~~~~k~~k~idk 90 (382)
.+...++.+++.+..
T Consensus 99 ~~~~~~~~~~~~~~~ 113 (158)
T PRK04098 99 SIQDLLQDYKKSLEE 113 (158)
T ss_pred hHHHHHhhhhhcccc
Confidence 666777777776653
No 199
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=39.25 E-value=20 Score=32.26 Aligned_cols=14 Identities=36% Similarity=1.025 Sum_probs=8.2
Q ss_pred cccCCCCCcCCccc
Q 016792 363 FKCPYCPSDIDAAQ 376 (382)
Q Consensus 363 ~kCP~c~~~~~~~~ 376 (382)
|+||.|+......+
T Consensus 133 F~Cp~Cg~~L~~~d 146 (176)
T COG1675 133 FTCPKCGEDLEEYD 146 (176)
T ss_pred CCCCCCCchhhhcc
Confidence 66777666554443
No 200
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.65 E-value=33 Score=35.35 Aligned_cols=58 Identities=19% Similarity=0.450 Sum_probs=38.8
Q ss_pred ccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcC---C--CccccC--CCCCcCCcccccc
Q 016792 320 HSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNH---S--RTFKCP--YCPSDIDAAQCRQ 379 (382)
Q Consensus 320 hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~---~--~~~kCP--~c~~~~~~~~~~~ 379 (382)
.....|.||-+-... ....++|||.||..+........ + ..++|| -|+.....+.+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~ 132 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEK 132 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeee
Confidence 445678888775544 46678999999999999954321 1 226777 5766666555543
No 201
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=38.36 E-value=2.1e+02 Score=30.97 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHH
Q 016792 112 QIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQ 191 (382)
Q Consensus 112 rlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~ 191 (382)
-..++|..+.|.+++|...+..+ +.. .+...+.|..=.+| .--+|+++.|..|+.+.+. |...+ ---.=+.-+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~A-IdH-TPTliEly~~KaRI--~kH~G~l~eAa~~l~ea~e-lD~aD--R~INsKcAK 447 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLA-IDH-TPTLIELYLVKARI--FKHAGLLDEAAAWLDEAQE-LDTAD--RAINSKCAK 447 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHH-hcc-CchHHHHHHHHHHH--HHhcCChHHHHHHHHHHHh-ccchh--HHHHHHHHH
Confidence 35789999999999999999776 333 24455555333333 3357999999999988752 22111 000001111
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCCch
Q 016792 192 FVEILRKGSREEALKYARANLAPFA 216 (382)
Q Consensus 192 fIeLl~~~~~~eAl~yar~~l~~f~ 216 (382)
-||+.+...+|.+.+- .|++++
T Consensus 448 --YmLrAn~i~eA~~~~s-kFTr~~ 469 (700)
T KOG1156|consen 448 --YMLRANEIEEAEEVLS-KFTREG 469 (700)
T ss_pred --HHHHccccHHHHHHHH-Hhhhcc
Confidence 2677777777777666 455543
No 202
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=37.70 E-value=3.7 Score=39.77 Aligned_cols=12 Identities=42% Similarity=1.063 Sum_probs=6.1
Q ss_pred ccccCCCCCcCC
Q 016792 362 TFKCPYCPSDID 373 (382)
Q Consensus 362 ~~kCP~c~~~~~ 373 (382)
+++||+|+.+-.
T Consensus 211 R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 211 RIKCPYCGNTDH 222 (290)
T ss_dssp TTS-TTT---SS
T ss_pred CCCCcCCCCCCC
Confidence 689999987643
No 203
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=37.69 E-value=16 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=25.4
Q ss_pred eeccCchhhhHHHHHHHHhcCCCcccc--CCCCCcCCccccccccC
Q 016792 339 MIMSCGHVLCRQSINKMSKNHSRTFKC--PYCPSDIDAAQCRQLYF 382 (382)
Q Consensus 339 ~~l~cGhv~~~~~l~~l~~~~~~~~kC--P~c~~~~~~~~~~~v~f 382 (382)
|..|+|+-|.++-|.+.-++ .| |+.|..++...-+-.||
T Consensus 10 VtIp~G~KYdK~wLl~~iq~-----~c~v~F~Pv~fh~~~~~a~Ff 50 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS-----HCSVPFTPVDFHYEKNRAQFF 50 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH-----HSSS----EEEEEETTEEEEE
T ss_pred EEecCCcccCHHHHHHHHHH-----HCCCCeeeeeeeeeCCEEEEE
Confidence 67899999999999887644 46 68888888776554443
No 204
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=37.17 E-value=79 Score=25.64 Aligned_cols=42 Identities=29% Similarity=0.467 Sum_probs=31.6
Q ss_pred chHHHHHHHHHcCCHHHHHHHHHHhcCCch--hhhHHHHHHHHH
Q 016792 187 LHSLQFVEILRKGSREEALKYARANLAPFA--SNHVNEIQKLMA 228 (382)
Q Consensus 187 L~~q~fIeLl~~~~~~eAl~yar~~l~~f~--~~~~~eiq~lm~ 228 (382)
=+.-..+|||+.|..-.|+.||++-+..+. ....+|++.+..
T Consensus 50 PYErr~mELLkv~kdKrAlKfaKkRlGth~RaK~Kreel~~vl~ 93 (98)
T PTZ00196 50 PYERRMIELLKVGKDKRALKYAKKRLGTHKRAKAKRDEIQEALR 93 (98)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344567999999999999999999998774 234466666544
No 205
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=36.77 E-value=13 Score=42.69 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHhcCCchhh--------hHHHHHHHHHhHcc
Q 016792 198 KGSREEALKYARANLAPFASN--------HVNEIQKLMACLIW 232 (382)
Q Consensus 198 ~~~~~eAl~yar~~l~~f~~~--------~~~eiq~lm~~L~f 232 (382)
.-+..+|+.+++++=.|+.+. -.+++..|...++-
T Consensus 473 ~p~~~eA~~~s~~~~~pLHP~yty~W~dis~e~~~~L~~~~~~ 515 (1337)
T PRK14714 473 RPTVEEAAHWATEYGAPLHPYYTYLWHDISVEQVRALADAVAD 515 (1337)
T ss_pred CCCHHHHHHHHHHhCCCCCCCeeeeeccCCHHHHHHHHHHHHh
Confidence 346789999999987776543 23566666665553
No 206
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=36.28 E-value=16 Score=25.04 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=11.2
Q ss_pred ccccCCCCCcCCccc
Q 016792 362 TFKCPYCPSDIDAAQ 376 (382)
Q Consensus 362 ~~kCP~c~~~~~~~~ 376 (382)
.++||+|+..+...+
T Consensus 21 ~~~Cp~CG~~~~~~~ 35 (46)
T PRK00398 21 GVRCPYCGYRILFKE 35 (46)
T ss_pred ceECCCCCCeEEEcc
Confidence 579999998766443
No 207
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=35.68 E-value=16 Score=25.03 Aligned_cols=7 Identities=57% Similarity=2.100 Sum_probs=6.0
Q ss_pred cCCCCCc
Q 016792 365 CPYCPSD 371 (382)
Q Consensus 365 CP~c~~~ 371 (382)
||||+..
T Consensus 1 CP~C~~k 7 (43)
T PF03470_consen 1 CPFCPGK 7 (43)
T ss_pred CCCCCCC
Confidence 9999875
No 208
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.56 E-value=2.2e+02 Score=24.14 Aligned_cols=57 Identities=7% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhh-hhhhhhHhhHHHHHHHHHHHHHHHhh
Q 016792 26 EVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDI-APLGQLEGTQKELNIALSKYTKILEK 90 (382)
Q Consensus 26 ~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~k~~~~~~~k~~k~idk 90 (382)
+.+|++-+.|..+|..|.. .+..|..++.+. +..+.+.+..-++..-++.++.-++.
T Consensus 50 kql~~vs~~l~~tKkhLsq--------RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQ--------RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 209
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=35.47 E-value=9.7 Score=30.34 Aligned_cols=29 Identities=31% Similarity=0.683 Sum_probs=20.8
Q ss_pred CCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcC
Q 016792 337 PPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDI 372 (382)
Q Consensus 337 pp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~ 372 (382)
||..-.||.++-.+.++ + .-+||.|..+-
T Consensus 58 Pa~CkkCGfef~~~~ik---~----pSRCP~CKSE~ 86 (97)
T COG3357 58 PARCKKCGFEFRDDKIK---K----PSRCPKCKSEW 86 (97)
T ss_pred ChhhcccCccccccccC---C----cccCCcchhhc
Confidence 57778899999775443 1 24899998763
No 210
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=35.35 E-value=1.7e+02 Score=27.62 Aligned_cols=33 Identities=12% Similarity=0.396 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhh
Q 016792 4 NDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKS 44 (382)
Q Consensus 4 ~~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~ 44 (382)
+-|+.|+++++ .+-+.|+++-..|..++.....
T Consensus 7 prVq~eLe~LN--------~atd~IN~lE~~L~~ar~~fr~ 39 (239)
T PF05276_consen 7 PRVQEELEKLN--------QATDEINRLENELDEARATFRR 39 (239)
T ss_pred cHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHH
Confidence 35777777773 3456777777777777765543
No 211
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=35.32 E-value=21 Score=24.05 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.8
Q ss_pred CccccCCCCCcCCcccc
Q 016792 361 RTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 361 ~~~kCP~c~~~~~~~~~ 377 (382)
+..+||.|+..+.....
T Consensus 12 ~~~~C~~CgM~Y~~~~~ 28 (41)
T PF13878_consen 12 GATTCPTCGMLYSPGSP 28 (41)
T ss_pred CCcCCCCCCCEECCCCH
Confidence 35799999999987654
No 212
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=35.24 E-value=3.2e+02 Score=29.33 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhhhhHhhHHHHHHHHHHHH
Q 016792 6 IKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYT 85 (382)
Q Consensus 6 ~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~k~~ 85 (382)
+++.-..++..|+ ++...|..-+..+..|..+|+.. ...+..+|+.|-..+.. .|..+.++.++++.-|.++.
T Consensus 246 L~~NQk~iA~sFN----~Ai~~I~~g~~t~~~Al~KiQ~V-VN~q~~aL~~L~~qL~n--nF~AISssI~dIy~RLd~le 318 (610)
T PF01601_consen 246 LQENQKIIANSFN----KAIGNIQLGFTTTASALNKIQDV-VNQQGQALNQLTSQLSN--NFGAISSSIQDIYNRLDQLE 318 (610)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHh
Confidence 3444444444443 35555555555555666655541 11256777777777764 77788888888887777665
Q ss_pred HH--HhhcC
Q 016792 86 KI--LEKSF 92 (382)
Q Consensus 86 k~--idk~f 92 (382)
.- +|++-
T Consensus 319 AdaQVDRLI 327 (610)
T PF01601_consen 319 ADAQVDRLI 327 (610)
T ss_dssp HH-------
T ss_pred hcccccccc
Confidence 43 45543
No 213
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=35.09 E-value=2.4 Score=32.22 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=20.0
Q ss_pred eeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 323 FVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 323 ~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
+.||.|+.+++..| |+.+|..|-..... ..-||-|.....
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~~~~----~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKDYKK----EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--EEEE----EEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccccee----cccCCCcccHHH
Confidence 46899988555433 77777776654332 347888876543
No 214
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=34.45 E-value=35 Score=29.27 Aligned_cols=43 Identities=9% Similarity=0.400 Sum_probs=32.1
Q ss_pred ceeccccccccCCCCCCeeccCc------hhhhHHHHHHHHhcCCCccccCC
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCG------HVLCRQSINKMSKNHSRTFKCPY 367 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cG------hv~~~~~l~~l~~~~~~~~kCP~ 367 (382)
..-|.||-+..+++.--|.++|| |++|.+|+++|.++. -+.||
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~---~rDPf 74 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER---NRDPF 74 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc---cCCCc
Confidence 56799999988773344558998 789999999996443 25565
No 215
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=34.45 E-value=2.1e+02 Score=21.84 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhhh----hHhhHHHHHHH
Q 016792 33 QEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQ----LEGTQKELNIA 80 (382)
Q Consensus 33 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~k~~~~~ 80 (382)
+.|+.+.+.+ . .| +....|.+++..+.+...+-. +-+..|++.++
T Consensus 19 ~~l~~a~~~l-~-~~-~nP~~La~~Q~~~~qYs~~~n~qSs~iK~iKD~~~~ 67 (72)
T TIGR02105 19 QAVNDSLAAL-D-LP-NDPELMAELQFALNQYSAYYNIESTIVKMIKDLDSG 67 (72)
T ss_pred HHHHHHHHcc-C-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444 1 23 446788999999987654433 33444554443
No 216
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.40 E-value=9.1e+02 Score=29.25 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHH--cCChHHHHHHHHhcc
Q 016792 106 DTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMK--SGNLEPALKWAAANS 173 (382)
Q Consensus 106 ~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~--~gdl~~Al~W~~~n~ 173 (382)
.++.++..+..+=.|..+.+...++.+.- +......+...=.+...+.+.|. .+.|.|++.|+.+|.
T Consensus 1061 ~~~~l~~~l~~~~~~~~~~~~~~~~re~E-Ie~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~ 1129 (1486)
T PRK04863 1061 RRDELHARLSANRSRRNQLEKQLTFCEAE-MDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNG 1129 (1486)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35778888888888878877777665432 11101112222223344444443 255999999999874
No 217
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=34.27 E-value=14 Score=23.96 Aligned_cols=15 Identities=20% Similarity=0.771 Sum_probs=10.6
Q ss_pred ccccCCCCCcCCccc
Q 016792 362 TFKCPYCPSDIDAAQ 376 (382)
Q Consensus 362 ~~kCP~c~~~~~~~~ 376 (382)
.++||.|++.+..++
T Consensus 2 ~~~CP~C~~~~~v~~ 16 (38)
T TIGR02098 2 RIQCPNCKTSFRVVD 16 (38)
T ss_pred EEECCCCCCEEEeCH
Confidence 367888888776654
No 218
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=34.18 E-value=32 Score=24.07 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=29.4
Q ss_pred cccc-cceeccccccccCCCCCCeeccCchhhhHHHHHH
Q 016792 317 FQFH-SIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINK 354 (382)
Q Consensus 317 ~~~h-S~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~ 354 (382)
..|| .-|.|-.|+..+++.. +....|.+||+++..+
T Consensus 20 ~~~H~~Cf~C~~C~~~l~~~~--~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 20 KFWHPECFKCSKCGKPLNDGD--FYEKDGKPYCKDCYQK 56 (58)
T ss_dssp EEEETTTSBETTTTCBTTTSS--EEEETTEEEEHHHHHH
T ss_pred cEEEccccccCCCCCccCCCe--eEeECCEEECHHHHhh
Confidence 3566 6899999999987654 8889999999998765
No 219
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=33.99 E-value=19 Score=21.51 Aligned_cols=9 Identities=44% Similarity=1.158 Sum_probs=7.0
Q ss_pred ccccCCCCC
Q 016792 362 TFKCPYCPS 370 (382)
Q Consensus 362 ~~kCP~c~~ 370 (382)
.|+||-|+.
T Consensus 16 ~f~CPnCG~ 24 (24)
T PF07754_consen 16 PFPCPNCGF 24 (24)
T ss_pred eEeCCCCCC
Confidence 688888874
No 220
>PRK11827 hypothetical protein; Provisional
Probab=33.32 E-value=19 Score=26.56 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=8.9
Q ss_pred cceecccccccc
Q 016792 321 SIFVCPVSKEQT 332 (382)
Q Consensus 321 S~~~Cpi~~~~~ 332 (382)
.|++||+|+...
T Consensus 7 eILaCP~ckg~L 18 (60)
T PRK11827 7 EIIACPVCNGKL 18 (60)
T ss_pred hheECCCCCCcC
Confidence 478899887644
No 221
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=33.21 E-value=31 Score=33.18 Aligned_cols=49 Identities=16% Similarity=0.514 Sum_probs=29.3
Q ss_pred cceeccccccccCC----------CCCCeeccCchhhhHHHHHHH--Hhc------CCCccccCCCCCcCC
Q 016792 321 SIFVCPVSKEQTSD----------DNPPMIMSCGHVLCRQSINKM--SKN------HSRTFKCPYCPSDID 373 (382)
Q Consensus 321 S~~~Cpi~~~~~~~----------~Npp~~l~cGhv~~~~~l~~l--~~~------~~~~~kCP~c~~~~~ 373 (382)
..|.|++|+.++.- ++ |||-..+|-+++.+- .++ +...|.||-|++.|.
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~----l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFA 226 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHT----LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFA 226 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccC----CCcccccccccccchHHhhcccccccCCCCccCCcccchhc
Confidence 67888888876532 23 455555555555431 111 123599999988774
No 222
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.13 E-value=20 Score=33.15 Aligned_cols=37 Identities=27% Similarity=0.628 Sum_probs=24.4
Q ss_pred ccccccccCCCCCCeeccCchhh-hHHHHHHHHhcCCCccccCCCCCc
Q 016792 325 CPVSKEQTSDDNPPMIMSCGHVL-CRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 325 Cpi~~~~~~~~Npp~~l~cGhv~-~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
|-.|++...- -++|||-|.. |..|=. + .-.||+|..-
T Consensus 161 Cr~C~~~~~~---VlllPCrHl~lC~~C~~------~-~~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGEREAT---VLLLPCRHLCLCGICDE------S-LRICPICRSP 198 (207)
T ss_pred ceecCcCCce---EEeecccceEecccccc------c-CccCCCCcCh
Confidence 9999985433 5668999864 444321 1 4579999753
No 223
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=33.12 E-value=3.5e+02 Score=26.09 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHhhhhhch--hhhHHHHHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHh-hhhhhhhHhhHHHH
Q 016792 3 LNDIKDAFDRVAKKQKLSC--SKTQEVIDLIVQEIEKALETVKSASHL--DDKYVLTELKRRLQD-IAPLGQLEGTQKEL 77 (382)
Q Consensus 3 ~~~~~~~~~~~~~k~~~~~--~~~~~~id~~~~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~-~~~~~~~~~~~k~~ 77 (382)
++++-+|+....|-|+-.+ +-....|.++...++.|+.+-...+.. +...-|++=.++|+. +.-+.+++...-++
T Consensus 65 letlnkeiaeatksfkeagsy~dypaiisklsaavenak~e~~~id~~na~i~k~lAeeNqKIq~gi~EL~Kl~~e~~~l 144 (353)
T PF01540_consen 65 LETLNKEIAEATKSFKEAGSYGDYPAIISKLSAAVENAKNEKKAIDDKNAQIDKKLAEENQKIQNGIEELKKLSNEAFEL 144 (353)
T ss_pred HHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Confidence 3566777777777666533 346677888878888777655442111 122334444444433 24566788888888
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 016792 78 NIALSKYTKILEKSFNPD 95 (382)
Q Consensus 78 ~~~~~k~~k~idk~f~~~ 95 (382)
...+.+....++|.|..|
T Consensus 145 ~kTi~~TIa~lEKKFqI~ 162 (353)
T PF01540_consen 145 SKTINKTIAKLEKKFQID 162 (353)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 888888888888888643
No 224
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=32.97 E-value=18 Score=25.55 Aligned_cols=12 Identities=50% Similarity=1.146 Sum_probs=9.4
Q ss_pred ccccCCCCCcCC
Q 016792 362 TFKCPYCPSDID 373 (382)
Q Consensus 362 ~~kCP~c~~~~~ 373 (382)
.+.||||+-..-
T Consensus 24 ~irCp~Cg~rIl 35 (49)
T COG1996 24 GIRCPYCGSRIL 35 (49)
T ss_pred ceeCCCCCcEEE
Confidence 589999987643
No 225
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.83 E-value=2.4e+02 Score=24.75 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 016792 22 SKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQD 63 (382)
Q Consensus 22 ~~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 63 (382)
++..+...++..++.+.++++++.+..|.=..=++|++++.+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~k 77 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDK 77 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 455666777888888899999886666654445667777664
No 226
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=32.69 E-value=54 Score=24.65 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=21.0
Q ss_pred hchHHHHHHHHHcCCHHHHHHHHHH
Q 016792 186 KLHSLQFVEILRKGSREEALKYARA 210 (382)
Q Consensus 186 ~L~~q~fIeLl~~~~~~eAl~yar~ 210 (382)
.|..++|=+|+..|++.+|-..|-.
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~AA~ 31 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4678999999999999999888873
No 227
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=32.59 E-value=62 Score=22.51 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.1
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHhcCCc
Q 016792 188 HSLQFVEILRKGSREEALKYARANLAPF 215 (382)
Q Consensus 188 ~~q~fIeLl~~~~~~eAl~yar~~l~~f 215 (382)
.+.++.+.|..|+..+|++++.++-+..
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l 31 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPL 31 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHH
Confidence 3567889999999999999999766543
No 228
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.58 E-value=6.3e+02 Score=26.79 Aligned_cols=93 Identities=14% Similarity=0.269 Sum_probs=49.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHhhcCCCChHhhhccccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHH
Q 016792 69 QLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFE 148 (382)
Q Consensus 69 ~~~~~~k~~~~~~~k~~k~idk~f~~~l~~~~~~~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~ 148 (382)
++-.++.++..++..|.++|+ ..++...++.+ -..+|++.++..=.+ +.++.|..|+..+-..+ +.--..++
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~---~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D--pkce~A~~ 541 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIE--LEPREHLIIVN---AAPLVHKALLVLQWK-EDINQAENLLRKAIELD--PKCEQAYE 541 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHh--hcccccccccc---chhhhhhhHhhhchh-hhHHHHHHHHHHHHccC--chHHHHHH
Confidence 444555566666666666655 33332222211 123455554444344 55777777776653323 22223455
Q ss_pred HHHHHHHHHHcCChHHHHHHHHh
Q 016792 149 DMYQILEAMKSGNLEPALKWAAA 171 (382)
Q Consensus 149 ~~~~I~~~L~~gdl~~Al~W~~~ 171 (382)
.|.++ .++.|+++.||+..++
T Consensus 542 tlaq~--~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 542 TLAQF--ELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHH--HHHHhhHHHHHHHHHH
Confidence 55554 3668888888888765
No 229
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=32.48 E-value=62 Score=20.68 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=15.4
Q ss_pred HHHHHHHH--cCChHHHHHHHH
Q 016792 151 YQILEAMK--SGNLEPALKWAA 170 (382)
Q Consensus 151 ~~I~~~L~--~gdl~~Al~W~~ 170 (382)
..++.+|. +||++.|++|+-
T Consensus 16 ~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 16 EEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHhCCCHHHHHHHHh
Confidence 45566766 699999999974
No 230
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=32.35 E-value=8.8e+02 Score=28.44 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcc
Q 016792 107 THTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANS 173 (382)
Q Consensus 107 ~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~ 173 (382)
+..+-.+-|+||.+++.++-|..+-.-.|-.. . .+......|||..|+.-+..-.
T Consensus 938 ~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle--k----------Al~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 938 QKVIYEAYADHLREELMSDEAALMYERCGKLE--K----------ALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhccHH--H----------HHHHHHHhccHHHHHHHHHhhc
Confidence 35566677899999999988887776666422 1 1122334688888888877543
No 231
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=31.96 E-value=1e+02 Score=25.06 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=33.4
Q ss_pred hhchHHHHHHHHHcCCHHHHHHHHHHhcCCch--hhhHHHHHHHHHh
Q 016792 185 LKLHSLQFVEILRKGSREEALKYARANLAPFA--SNHVNEIQKLMAC 229 (382)
Q Consensus 185 F~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~--~~~~~eiq~lm~~ 229 (382)
|-=+-..-+|||+.|+...|+.|+++-+..+. ....+|++.++..
T Consensus 48 faPYEkr~mELlkv~kdKrAlKf~KKRlGth~RAKrKrEel~~vl~~ 94 (98)
T PF01158_consen 48 FAPYEKRAMELLKVSKDKRALKFAKKRLGTHIRAKRKREELSNVLAA 94 (98)
T ss_dssp HCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33445678999999999999999999998764 3345666665543
No 232
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.85 E-value=13 Score=34.39 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=30.2
Q ss_pred cccceeccccccccCCCCCCeeccCchhhhHHHHHHH-HhcCC----CccccCCCCCcCCccccc
Q 016792 319 FHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKM-SKNHS----RTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l-~~~~~----~~~kCP~c~~~~~~~~~~ 378 (382)
|.-.+.||||+..++.. =|.-.-+.++.+++=-.- -++-+ ....||.|+-.+...+..
T Consensus 2 y~k~~~CPvC~~~F~~~--~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~ 64 (214)
T PF09986_consen 2 YDKKITCPVCGKEFKTK--KVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFE 64 (214)
T ss_pred CCCceECCCCCCeeeee--EEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccc
Confidence 34467899999987652 122333334432211000 00101 257899999877766544
No 233
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=31.82 E-value=3.2e+02 Score=23.10 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=8.6
Q ss_pred hhhhhHhhH--HHHHHHHHH
Q 016792 66 PLGQLEGTQ--KELNIALSK 83 (382)
Q Consensus 66 ~~~~~~~~~--k~~~~~~~k 83 (382)
..+++.++. |++-..+++
T Consensus 50 isdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT-
T ss_pred HHHHHHhchhhHHHHHHHhc
Confidence 334555553 666666555
No 234
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=31.67 E-value=23 Score=28.90 Aligned_cols=27 Identities=33% Similarity=0.645 Sum_probs=17.4
Q ss_pred CCeeccCchhhhHHHHHHHHhcCCCccccCCCCC
Q 016792 337 PPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPS 370 (382)
Q Consensus 337 pp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~ 370 (382)
|.-...|||||..-+-.-|+ -||.|+-
T Consensus 2 pH~CtrCG~vf~~g~~~il~-------GCp~CG~ 28 (112)
T COG3364 2 PHQCTRCGEVFDDGSEEILS-------GCPKCGC 28 (112)
T ss_pred CceecccccccccccHHHHc-------cCccccc
Confidence 34567899999875433332 4888864
No 235
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=31.28 E-value=2e+02 Score=23.24 Aligned_cols=59 Identities=12% Similarity=-0.094 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhc
Q 016792 110 VSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAAN 172 (382)
Q Consensus 110 lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n 172 (382)
....++.-+++.|.++.|....+..-... +...+.+..+..+ ....|+.+.|+.|.+..
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~--~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC--LLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH--HHHcCCHHHHHHHHHHH
Confidence 34456777888888888776665542212 2233333333322 23468999999998654
No 236
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=31.26 E-value=88 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHcCChHHHHHHHHhc
Q 016792 141 AAILSIFEDMYQILEAMKSGNLEPALKWAAAN 172 (382)
Q Consensus 141 ~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n 172 (382)
........+..+|+++|++||.+.|-+++..|
T Consensus 91 ~~~~~~~~~h~~i~~ai~~~d~~~a~~~~~~h 122 (125)
T PF07729_consen 91 EDLERSLEEHREIIDAIRAGDPEAAREALRQH 122 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445667789999999999999999999876
No 237
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=31.07 E-value=2.2e+02 Score=21.17 Aligned_cols=50 Identities=28% Similarity=0.299 Sum_probs=30.0
Q ss_pred HHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHH
Q 016792 155 EAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARA 210 (382)
Q Consensus 155 ~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~ 210 (382)
-..+.|+.+.|++|++. ..... .+ +..+.+----+++.|+..+|+++..+
T Consensus 34 ~~~~~~~y~~A~~~~~~--~~~~~--~~--~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 34 CYFQQGKYEEAIELLQK--LKLDP--SN--PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHTTHHHHHHHHHHC--HTHHH--CH--HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH--hCCCC--CC--HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 33467999999999987 22222 22 23333333445667888899887653
No 238
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.91 E-value=1.9e+02 Score=27.12 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHhCCCcch-hhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcc
Q 016792 111 SQIIASHFYRQGLFEVGDCFISETKESECS-AAILSIFEDMYQILEAMKSGNLEPALKWAAANS 173 (382)
Q Consensus 111 nrlI~~hLlR~G~~e~a~~f~~Es~~~~~~-~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~ 173 (382)
.|+.+.++...|..+.|-.++....-+..+ .....-+....+.++.|+.|.++.||++++.+-
T Consensus 67 eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 67 ERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 478888999999999999998876532201 111223344567788999999999999998863
No 239
>PF04641 Rtf2: Rtf2 RING-finger
Probab=30.91 E-value=49 Score=31.51 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=34.0
Q ss_pred CcccccccceeccccccccCCCCCCee-ccCchhhhHHHHHHHHhc
Q 016792 314 DKEFQFHSIFVCPVSKEQTSDDNPPMI-MSCGHVLCRQSINKMSKN 358 (382)
Q Consensus 314 p~~~~~hS~~~Cpi~~~~~~~~Npp~~-l~cGhv~~~~~l~~l~~~ 358 (382)
+...+.+.-..|++|++.+.. ||+ =..|++|.+++|-.+.-.
T Consensus 26 ~~~~~~~~w~~CaLS~~pL~~---PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 26 KEEEREARWTHCALSQQPLED---PIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred HhHHhhCCcCcccCcCCccCC---CeeeCCCCeeEcHHHHHHHHHh
Confidence 334567788899999999987 764 689999999999987544
No 240
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=30.41 E-value=2.7e+02 Score=22.95 Aligned_cols=41 Identities=15% Similarity=0.365 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhh
Q 016792 4 NDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKS 44 (382)
Q Consensus 4 ~~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~ 44 (382)
+.+++=+|.+.+|=+.+...+-+.+|.++..++.++.++.+
T Consensus 24 ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~ 64 (108)
T COG3937 24 EKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEE 64 (108)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34667788889998888888999999999999888877755
No 241
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=30.37 E-value=7.1 Score=27.26 Aligned_cols=10 Identities=30% Similarity=1.006 Sum_probs=6.3
Q ss_pred ccccCCCCCc
Q 016792 362 TFKCPYCPSD 371 (382)
Q Consensus 362 ~~kCP~c~~~ 371 (382)
.++||.|+..
T Consensus 34 ~w~CP~C~a~ 43 (47)
T PF00301_consen 34 DWVCPVCGAP 43 (47)
T ss_dssp T-B-TTTSSB
T ss_pred CCcCcCCCCc
Confidence 5899999764
No 242
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=29.86 E-value=40 Score=37.89 Aligned_cols=55 Identities=20% Similarity=0.407 Sum_probs=37.1
Q ss_pred cccceeccccccccC--CCCCC--eeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCc
Q 016792 319 FHSIFVCPVSKEQTS--DDNPP--MIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDA 374 (382)
Q Consensus 319 ~hS~~~Cpi~~~~~~--~~Npp--~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~ 374 (382)
|--.=-|+||-...+ +---| -.=.|.|-+--.||-||.+.++ .-.||.|+.+++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~-~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA-RSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC-CCCCCcccccccc
Confidence 333446777765543 11112 2247899999999999987754 5699999988753
No 243
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.63 E-value=4.2e+02 Score=23.87 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHhhcC-------CCChHh
Q 016792 26 EVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSF-------NPDISK 98 (382)
Q Consensus 26 ~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~k~~k~idk~f-------~~~l~~ 98 (382)
..+|--|..+++-...++. +..+...-+..|.+.+ ++.++.....++...+.-+.++|.+.- +.|-+.
T Consensus 82 ~~ld~~i~~l~ek~q~l~~-t~s~veaEik~L~s~L----t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~ 156 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQ-TCSYVEAEIKELSSAL----TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQ 156 (201)
T ss_pred HHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3444444444444444443 1112233344444433 344666666666666666666665432 223333
Q ss_pred hhcc-----ccCC-HHHHHHHHHHHHHHhCcHHHHHHHHHHhCCC
Q 016792 99 AYRN-----IEFD-THTVSQIIASHFYRQGLFEVGDCFISETKES 137 (382)
Q Consensus 99 ~~~~-----~~~~-~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~ 137 (382)
+++. -.|. +.++-+-|.+-++. |+--.-..|..|.||+
T Consensus 157 v~~~y~~~~~~wrk~krmf~ei~d~~~e-~~pk~ksel~eelGIE 200 (201)
T KOG4603|consen 157 VYREYQKYCKEWRKRKRMFREIIDKLLE-GLPKKKSELYEELGIE 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHHhCcC
Confidence 4431 2343 34566666666554 4444445566666664
No 244
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=29.48 E-value=27 Score=33.56 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=21.8
Q ss_pred HhhhccccchhhhhhhhccccccccccCCCCccccCCcccccccceecccccc
Q 016792 278 AAGVQALPPLLKFMTVMAGKKQEWQSMKQLPVPVELDKEFQFHSIFVCPVSKE 330 (382)
Q Consensus 278 ~aG~~aLpt~~k~~~~~~~~~~~~~~~~eLp~~i~Lp~~~~~hS~~~Cpi~~~ 330 (382)
.+|...|-..+.|... | ...|+.+.= .+.|.=.||.||.
T Consensus 279 ~~~~~~~~~~l~yka~-------~---~~~~v~~~~----~~~tS~~C~~cg~ 317 (364)
T COG0675 279 DWAFGELRRQLEYKAE-------W---GGIVVKVVP----PYYTSKTCPCCGH 317 (364)
T ss_pred hhhHHHHHHHHHHHHH-------h---CCeEEEECC----CCCCcccccccCC
Confidence 3555555555666542 2 123444431 2566678999888
No 245
>PHA02607 wac fibritin; Provisional
Probab=29.31 E-value=3.9e+02 Score=27.73 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhhhhHhhHHHHH
Q 016792 5 DIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELN 78 (382)
Q Consensus 5 ~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~k~~~ 78 (382)
.|++.++++-...+. +...|+.+++.++....-|.. . .+..+++.+......+..+++....+++--
T Consensus 49 ~VQ~NV~~ld~n~~~----~~~kine~vd~vn~I~~~L~~-~--gD~~~i~qv~~n~~dI~~lk~~~~~~~~~l 115 (454)
T PHA02607 49 NVQKNVEQLDENTKK----TKDKINEVVDDVNTIQENLDV-I--GDISVIDQINQNVADIEVLKKDVSDTTDKL 115 (454)
T ss_pred HHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHhhc-c--CcHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 467888888766555 556666666777777776655 2 345666777776666666675555554433
No 246
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.27 E-value=3.7e+02 Score=25.89 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhhhhHhhHHHHHHHH
Q 016792 2 ELNDIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIAL 81 (382)
Q Consensus 2 ~~~~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~ 81 (382)
|++++...++.+.+|+.. .++.||++=..+.....+|.. +.+.|++ +-+.+.++.|.++..=
T Consensus 53 ei~~L~~qi~~~~~k~~~----~~~~i~~~~~eik~l~~eI~~------------~~~~I~~--r~~~l~~raRAmq~nG 114 (265)
T COG3883 53 EIESLDNQIEEIQSKIDE----LQKEIDQSKAEIKKLQKEIAE------------LKENIVE--RQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH------------HHHHHHH--HHHHHHHHHHHHHHcC
Q ss_pred HHHHHHHhhcCC-CChHhhhcc-------ccCCHHHHHHHHHHH
Q 016792 82 SKYTKILEKSFN-PDISKAYRN-------IEFDTHTVSQIIASH 117 (382)
Q Consensus 82 ~k~~k~idk~f~-~~l~~~~~~-------~~~~~~~lnrlI~~h 117 (382)
+-.+ .||-.|. .++.....- ++.|+..+...+.++
T Consensus 115 ~~t~-Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk 157 (265)
T COG3883 115 TATS-YIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDK 157 (265)
T ss_pred ChhH-HHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
No 247
>PLN03086 PRLI-interacting factor K; Provisional
Probab=29.20 E-value=53 Score=34.99 Aligned_cols=49 Identities=18% Similarity=0.467 Sum_probs=0.0
Q ss_pred eeccccccccCC----------CCCCeeccCchhhhHHHHHHHHhc--CCCccccCCCCCcC
Q 016792 323 FVCPVSKEQTSD----------DNPPMIMSCGHVLCRQSINKMSKN--HSRTFKCPYCPSDI 372 (382)
Q Consensus 323 ~~Cpi~~~~~~~----------~Npp~~l~cGhv~~~~~l~~l~~~--~~~~~kCP~c~~~~ 372 (382)
+.|+.|++.+.. + -|+.=|||..+.+..|.+=... ..+.++|++|+..+
T Consensus 454 ~~C~~Cgk~f~~s~LekH~~~~H-kpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v 514 (567)
T PLN03086 454 VHCEKCGQAFQQGEMEKHMKVFH-EPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMV 514 (567)
T ss_pred ccCCCCCCccchHHHHHHHHhcC-CCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCcc
No 248
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=29.20 E-value=5.6e+02 Score=25.16 Aligned_cols=156 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhh--hhHhhHHHHHHHHHHHHHHHhhcCCCChHh
Q 016792 21 CSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLG--QLEGTQKELNIALSKYTKILEKSFNPDISK 98 (382)
Q Consensus 21 ~~~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~k~~~~~~~k~~k~idk~f~~~l~~ 98 (382)
..+..+..+.-.-.|.++..+ . +....+..|....+.....+ .+....-+.+..+-++.+.+++.+..+
T Consensus 104 y~q~d~~~~~a~~~l~~~~~~--~----~~~~~~~~L~~a~~~y~~~k~~~f~~~~~e~q~~Ll~~Q~~Le~~~~~~--- 174 (319)
T PF04840_consen 104 YYQEDRFQELANLHLQEALSQ--K----DVEEKISFLKQAQKLYSKSKNDAFEAKLIEEQIKLLEYQKELEEKYNTN--- 174 (319)
T ss_pred HHhcchHHHHHHHHHHHHHhC--C----ChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhccc---
Q ss_pred hhccccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhh
Q 016792 99 AYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQ 178 (382)
Q Consensus 99 ~~~~~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~ 178 (382)
|..--++.. +..|+..|....|+.+.++..+++ ..|- .-.|..-...|+|+.--.|+...+
T Consensus 175 ------f~~~Sl~~T-i~~li~~~~~k~A~kl~k~Fkv~d------krfw-~lki~aLa~~~~w~eL~~fa~skK----- 235 (319)
T PF04840_consen 175 ------FVGLSLNDT-IRKLIEMGQEKQAEKLKKEFKVPD------KRFW-WLKIKALAENKDWDELEKFAKSKK----- 235 (319)
T ss_pred ------hhcCCHHHH-HHHHHHCCCHHHHHHHHHHcCCcH------HHHH-HHHHHHHHhcCCHHHHHHHHhCCC-----
Q ss_pred cCCchhhhchHHHHHH-HHHcCCHHHHHHHHHH
Q 016792 179 NGSDLQLKLHSLQFVE-ILRKGSREEALKYARA 210 (382)
Q Consensus 179 ~~s~LeF~L~~q~fIe-Ll~~~~~~eAl~yar~ 210 (382)
|++=|+- |++ +++.|+..+|..|...
T Consensus 236 --sPIGyep----Fv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 236 --SPIGYEP----FVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred --CCCChHH----HHHHHHHCCCHHHHHHHHHh
No 249
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.95 E-value=2.7e+02 Score=21.60 Aligned_cols=7 Identities=0% Similarity=0.083 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 016792 81 LSKYTKI 87 (382)
Q Consensus 81 ~~k~~k~ 87 (382)
+...|..
T Consensus 77 v~~~g~~ 83 (90)
T PF06103_consen 77 VADLGES 83 (90)
T ss_pred HHHHHHH
Confidence 3333333
No 250
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.91 E-value=3.2e+02 Score=22.21 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 016792 26 EVIDLIVQEIEKALETVKSA 45 (382)
Q Consensus 26 ~~id~~~~~l~~~~~~~~~~ 45 (382)
..++.-+.+...+.++|...
T Consensus 27 ~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 27 QQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 45555556666666666653
No 251
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.90 E-value=4.8e+02 Score=24.56 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=11.8
Q ss_pred CCchHHHHHHHHHHhhh
Q 016792 1 MELNDIKDAFDRVAKKQ 17 (382)
Q Consensus 1 ~~~~~~~~~~~~~~~k~ 17 (382)
|.---++.|+||+.||-
T Consensus 1 m~~RKLQ~Eid~~lKkv 17 (233)
T PF04065_consen 1 MAKRKLQQEIDRTLKKV 17 (233)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 44455778888887774
No 252
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=28.87 E-value=70 Score=20.30 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=14.1
Q ss_pred HHHHHHH--cCChHHHHHHH
Q 016792 152 QILEAMK--SGNLEPALKWA 169 (382)
Q Consensus 152 ~I~~~L~--~gdl~~Al~W~ 169 (382)
+++.+|. +||++.|++|+
T Consensus 17 ~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 17 EALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 4566665 69999999996
No 253
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=28.66 E-value=13 Score=36.57 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=39.1
Q ss_pred ccccCCcccccccceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCc
Q 016792 309 VPVELDKEFQFHSIFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 309 ~~i~Lp~~~~~hS~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
++...|.+...|-.++=-+-|+ +-|+-..|-|||......|-...+-.-.+|.||+|+.-
T Consensus 192 ~~~~~~r~~~a~DRI~d~lvGd---sP~~ryALIC~~C~~HNGla~~ee~~yi~F~C~~Cn~L 251 (328)
T KOG2846|consen 192 FEHYKPRSRAAFDRILDYLVGD---SPNNRYALICSQCHHHNGLARKEEYEYITFRCPHCNAL 251 (328)
T ss_pred cccCCcchhhHHHHHHHHHhcC---CCcchhhhcchhhccccCcCChhhcCceEEECcccccc
Confidence 3444455555555444333344 45667889999998888877665444457999999753
No 254
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=28.28 E-value=17 Score=23.23 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=7.6
Q ss_pred ccccCCCCCcC
Q 016792 362 TFKCPYCPSDI 372 (382)
Q Consensus 362 ~~kCP~c~~~~ 372 (382)
.++||+|+-..
T Consensus 17 ~irC~~CG~RI 27 (32)
T PF03604_consen 17 PIRCPECGHRI 27 (32)
T ss_dssp TSSBSSSS-SE
T ss_pred cEECCcCCCeE
Confidence 68999997543
No 255
>smart00355 ZnF_C2H2 zinc finger.
Probab=28.20 E-value=29 Score=19.34 Aligned_cols=13 Identities=23% Similarity=0.858 Sum_probs=9.9
Q ss_pred cccCCCCCcCCcc
Q 016792 363 FKCPYCPSDIDAA 375 (382)
Q Consensus 363 ~kCP~c~~~~~~~ 375 (382)
++|+.|+..+.-.
T Consensus 1 ~~C~~C~~~f~~~ 13 (26)
T smart00355 1 YRCPECGKVFKSK 13 (26)
T ss_pred CCCCCCcchhCCH
Confidence 4799999887654
No 256
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=28.18 E-value=20 Score=38.73 Aligned_cols=49 Identities=29% Similarity=0.758 Sum_probs=38.0
Q ss_pred ceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
+.-||||.+..-+ |..+.|-|.|++-|+..+.....+...||.|.....
T Consensus 21 ~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 5679999887776 788999999999999987543333678999985443
No 257
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=27.97 E-value=37 Score=34.68 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=13.3
Q ss_pred ccccCCCCCcCCccccc
Q 016792 362 TFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 362 ~~kCP~c~~~~~~~~~~ 378 (382)
-|+||.|+..+...+..
T Consensus 367 g~rC~kCg~~~~~~~~~ 383 (421)
T COG1571 367 GFRCKKCGTRARETLIK 383 (421)
T ss_pred CcccccccccCCccccc
Confidence 69999999888766543
No 258
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=27.73 E-value=2.8e+02 Score=22.46 Aligned_cols=7 Identities=43% Similarity=0.539 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 016792 10 FDRVAKK 16 (382)
Q Consensus 10 ~~~~~~k 16 (382)
++..+.+
T Consensus 25 l~~Wa~~ 31 (113)
T PF02520_consen 25 LDEWAEK 31 (113)
T ss_pred HHHHHHH
Confidence 3333333
No 259
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=27.59 E-value=25 Score=27.23 Aligned_cols=13 Identities=38% Similarity=1.295 Sum_probs=9.6
Q ss_pred ccccCCCCCcCCc
Q 016792 362 TFKCPYCPSDIDA 374 (382)
Q Consensus 362 ~~kCP~c~~~~~~ 374 (382)
.+.|++|++.+.-
T Consensus 50 ~~~C~~C~~~f~s 62 (100)
T PF12756_consen 50 SFRCPYCNKTFRS 62 (100)
T ss_dssp SEEBSSSS-EESS
T ss_pred CCCCCccCCCCcC
Confidence 5899999998753
No 260
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=27.27 E-value=29 Score=24.69 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=11.9
Q ss_pred ccccCCCCCcCCccc
Q 016792 362 TFKCPYCPSDIDAAQ 376 (382)
Q Consensus 362 ~~kCP~c~~~~~~~~ 376 (382)
.+|||.|+...++..
T Consensus 24 eIKCpRC~tiN~~~a 38 (51)
T PF10122_consen 24 EIKCPRCKTINHVRA 38 (51)
T ss_pred EEECCCCCccceEec
Confidence 699999998776544
No 261
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.22 E-value=2.3e+02 Score=20.16 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=38.5
Q ss_pred HHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhc
Q 016792 157 MKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANL 212 (382)
Q Consensus 157 L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l 212 (382)
+.++|++.|+++++.-- +. .+-...++...-.-+.+.|+..+|+++..+.+
T Consensus 6 ~~~~~~~~A~~~~~~~l----~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERAL----EL-DPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHH----Hh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56899999999987642 22 22266777777777888899999999888765
No 262
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.18 E-value=3.2e+02 Score=21.72 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHH
Q 016792 8 DAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETV 42 (382)
Q Consensus 8 ~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~ 42 (382)
.++.-.++..+.+....+..++++.+.+.......
T Consensus 10 ~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~l~~~W 44 (97)
T COG4842 10 EEMRATAKDYAGSSGEIQALLQDLASEIAKLQSAW 44 (97)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 45555566655655555555555444444444433
No 263
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=27.12 E-value=4.5e+02 Score=23.38 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=30.6
Q ss_pred HHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHH
Q 016792 8 DAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTK 86 (382)
Q Consensus 8 ~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~k~~k 86 (382)
..++.+.+.++-.....++.++ ++..|+++..++.. -......|...| .+...++...|+.+..++.+.-
T Consensus 87 ~~~k~~~~ifkegg~d~~k~~~-~l~~L~e~snki~k-----Le~~~k~L~d~I---v~~~~i~e~IKd~de~L~~I~d 156 (163)
T PF03233_consen 87 SFFKDLSKIFKEGGGDKQKQLK-LLPTLEEISNKIRK-----LETEVKKLKDNI---VTEKLIEELIKDFDERLKEIRD 156 (163)
T ss_pred HHHHHHHHHHHhcCCchhhHHH-HHHHHHHHHHHHHH-----HHHHHHhHhhhc---cccHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333333 55555555554433 111222333332 2444555556666655555443
No 264
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=26.96 E-value=25 Score=37.41 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=26.2
Q ss_pred ceeccccccccCC-------CCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCc
Q 016792 322 IFVCPVSKEQTSD-------DNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 322 ~~~Cpi~~~~~~~-------~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
.|+|.+| +.++ +|---...||+||-+.|+..-+ .-||.|-..
T Consensus 511 gfiCe~C--q~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s------~~CPrC~R~ 559 (580)
T KOG1829|consen 511 GFICELC--QHNDIIYPFETRNTRRCSTCLAVFHKKCLRRKS------PCCPRCERR 559 (580)
T ss_pred eeeeeec--cCCCcccccccccceeHHHHHHHHHHHHHhccC------CCCCchHHH
Confidence 5788888 3322 1212236899999999987432 228988543
No 265
>PLN02195 cellulose synthase A
Probab=26.75 E-value=50 Score=37.28 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=35.6
Q ss_pred eeccccccccC---CCCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 323 FVCPVSKEQTS---DDNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 323 ~~Cpi~~~~~~---~~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
=+|-|||+... +.+|.|. --||.-.|+.|.+-=.+.+ .--||.|+..|.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg--~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEG--RKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcC--CccCCccCCccc
Confidence 38999998542 2344443 5899999999995444443 569999999998
No 266
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=26.35 E-value=4.9e+02 Score=24.44 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHhhcC
Q 016792 23 KTQEVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSF 92 (382)
Q Consensus 23 ~~~~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~k~~k~idk~f 92 (382)
.+.+.+|+++..=+...++|++ .|..|.+.++.. .-...+.+|+-+..+...+|-+|.+.
T Consensus 137 ~v~~s~dq~l~~q~~lQeeLae--------sll~LArslKtn--alAfqsalkeDnQvl~~~~k~~D~N~ 196 (244)
T KOG2678|consen 137 EVTKSVDQQLEDQDTLQEELAE--------SLLKLARSLKTN--ALAFQSALKEDNQVLGAAEKGIDVNS 196 (244)
T ss_pred cchhHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHh--HHHHHHHHHhhHHHHHHHHHHHhHHH
Confidence 4666677766665555555544 345555555542 12344567777888888888888653
No 267
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.34 E-value=5.5e+02 Score=24.09 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhh-hhhhhhHhhHHHHHHHHHHHHHHHhhcCC
Q 016792 51 KYVLTELKRRLQDI-APLGQLEGTQKELNIALSKYTKILEKSFN 93 (382)
Q Consensus 51 ~~~l~~l~~~~~~~-~~~~~~~~~~k~~~~~~~k~~k~idk~f~ 93 (382)
..-+..|...+++. ..++.+.+.+|++-.++..+|+.+.-+-.
T Consensus 28 k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~ 71 (234)
T cd07664 28 QQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGN 71 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46667777777765 56778899999999999999999987643
No 268
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=26.25 E-value=20 Score=25.98 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=10.7
Q ss_pred ccccCCCCCcCCc
Q 016792 362 TFKCPYCPSDIDA 374 (382)
Q Consensus 362 ~~kCP~c~~~~~~ 374 (382)
-++||.|++.|..
T Consensus 17 ~lrCPRC~~~FR~ 29 (65)
T COG4049 17 FLRCPRCGMVFRR 29 (65)
T ss_pred eeeCCchhHHHHH
Confidence 5899999988754
No 269
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=26.24 E-value=18 Score=27.14 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=24.4
Q ss_pred ceeccccccccCCCCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCcccc
Q 016792 322 IFVCPVSKEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQC 377 (382)
Q Consensus 322 ~~~Cpi~~~~~~~~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~ 377 (382)
.|.|.+|+..+ .|.+|+.+-. ++.-.++||-|....-+.|=
T Consensus 4 ~FTC~~C~~Rs-----------~~~~sk~aY~----~GvViv~C~gC~~~HlIaDn 44 (66)
T PF05180_consen 4 TFTCNKCGTRS-----------AKMFSKQAYH----KGVVIVQCPGCKNRHLIADN 44 (66)
T ss_dssp EEEETTTTEEE-----------EEEEEHHHHH----TSEEEEE-TTS--EEES--S
T ss_pred EEEcCCCCCcc-----------ceeeCHHHHh----CCeEEEECCCCcceeeehhh
Confidence 57888887644 3677887765 33235899999887766553
No 270
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=26.21 E-value=63 Score=31.88 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=36.4
Q ss_pred eeccccccccCC-CCCCeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 323 FVCPVSKEQTSD-DNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 323 ~~Cpi~~~~~~~-~Npp~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
=.||+|.+.++. +++.+=-|||+-+|..|+..+..+ ...||.|++.+.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~---~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG---DGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc---CCCCCccCCccc
Confidence 479999997743 344455799999999999888755 368999986554
No 271
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.16 E-value=2.8e+02 Score=29.62 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHhhhhh
Q 016792 4 NDIKDAFDRVAKKQKL 19 (382)
Q Consensus 4 ~~~~~~~~~~~~k~~~ 19 (382)
+.+..+..|+.+.-++
T Consensus 208 e~L~~e~~rLsn~ekl 223 (557)
T COG0497 208 EELEEERKRLSNSEKL 223 (557)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 4455555555554433
No 272
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.14 E-value=3.4e+02 Score=27.24 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhhhh
Q 016792 6 IKDAFDRVAKKQKL 19 (382)
Q Consensus 6 ~~~~~~~~~~k~~~ 19 (382)
-+.|++||+.+-|.
T Consensus 196 WklEvERV~PqLKv 209 (359)
T PF10498_consen 196 WKLEVERVLPQLKV 209 (359)
T ss_pred HHHHHHHHhhhhee
Confidence 35677777776654
No 273
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=26.12 E-value=75 Score=29.93 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=32.1
Q ss_pred ccccccceeccccccccCCCCCCeec----c-CchhhhHHHHHHHHhcCCCccccCCCCCc
Q 016792 316 EFQFHSIFVCPVSKEQTSDDNPPMIM----S-CGHVLCRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 316 ~~~~hS~~~Cpi~~~~~~~~Npp~~l----~-cGhv~~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
.+...|...|.-|+.......|-+.| | ++...-..++..+.+......+|+.|+..
T Consensus 75 ~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e~~C~~C~~~ 135 (245)
T cd02673 75 KYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIEKDCSSCKCE 135 (245)
T ss_pred eeEEEeEEEecCCCCeeeeccccceeccccccCCcchHHHHHHHhhcccccCccCCCCCCc
Confidence 34567888898888765443332222 2 23333344554444433335799999875
No 274
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=26.04 E-value=3.1e+02 Score=21.16 Aligned_cols=32 Identities=13% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHhh
Q 016792 5 DIKDAFDRVAKKQKLSCSKTQEVIDLIVQEIEKALETVKS 44 (382)
Q Consensus 5 ~~~~~~~~~~~k~~~~~~~~~~~id~~~~~l~~~~~~~~~ 44 (382)
++++|++.| .+.+.+|+.+++.|+.+...++.
T Consensus 2 aL~kEL~~L--------r~IN~~ie~~~~~L~~a~~~~~~ 33 (78)
T PF08651_consen 2 ALEKELEQL--------RKINPVIEGLIETLRSAKSNMNR 33 (78)
T ss_pred hHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777666 34566777777777777655544
No 275
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.01 E-value=6.1e+02 Score=24.54 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHH---cCChHHHHHHHHhcchHhhhcCCchhh
Q 016792 109 TVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMK---SGNLEPALKWAAANSDKLTQNGSDLQL 185 (382)
Q Consensus 109 ~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~---~gdl~~Al~W~~~n~~~L~~~~s~LeF 185 (382)
.+...++--.+..|..+.|..-.+...... +-+- +-.++.+++ .|+.+.|++..+. |.. +.+..|
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~------RV~~lkam~lEa~~~~~~A~e~y~~----lL~-ddpt~~ 120 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSK------RVGKLKAMLLEATGNYKEAIEYYES----LLE-DDPTDT 120 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCCh------hHHHHHHHHHHHhhchhhHHHHHHH----Hhc-cCcchh
Confidence 355555556666777888876665543222 1111 122344443 6999999998764 222 237788
Q ss_pred hchHHHHHHHHHcCCHHHHHHHHHHhcCCch
Q 016792 186 KLHSLQFVEILRKGSREEALKYARANLAPFA 216 (382)
Q Consensus 186 ~L~~q~fIeLl~~~~~~eAl~yar~~l~~f~ 216 (382)
-.|+-+..-+--.|+..+||+-..+++-.|.
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~F~ 151 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDKFM 151 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 8888777777778888888887777666554
No 276
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=26.00 E-value=1.5e+02 Score=22.50 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCCh
Q 016792 104 EFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNL 162 (382)
Q Consensus 104 ~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl 162 (382)
..+.+.++.+|-+|++|+|-. .|... .... ....++..+|++|..
T Consensus 7 ~L~~eTL~nLIeefv~ReGTd---------yG~~E--~sL~---~kv~qv~~qL~~G~a 51 (70)
T PF06794_consen 7 QLPPETLNNLIEEFVLREGTD---------YGEQE--LSLE---EKVEQVKQQLKSGEA 51 (70)
T ss_dssp GS-HHHHHHHHHHHHH-----------------------HH---HHHHHHHHHHHTTSE
T ss_pred HCCHHHHHHHHHHHHHccCcc---------cCccc--ccHH---HHHHHHHHHHHcCCE
Confidence 346788999999999999952 22211 1111 124567777877763
No 277
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=25.92 E-value=1e+02 Score=27.19 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=15.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhh
Q 016792 20 SCSKTQEVIDLIVQEIEKALETVKS 44 (382)
Q Consensus 20 ~~~~~~~~id~~~~~l~~~~~~~~~ 44 (382)
.+......++.+..-|+.+.+.|..
T Consensus 57 ~n~~~~e~l~~~~~kl~et~~~L~k 81 (155)
T PF07464_consen 57 ANPEAEEALKQLKTKLEETAEKLRK 81 (155)
T ss_dssp -SSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666777766654
No 278
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.59 E-value=3.3e+02 Score=21.31 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--------------hHHHHHHHHHHHHhh-hhhhhhHhhHHHHHHHHHHHHHHHhh
Q 016792 26 EVIDLIVQEIEKALETVKSASHLD--------------DKYVLTELKRRLQDI-APLGQLEGTQKELNIALSKYTKILEK 90 (382)
Q Consensus 26 ~~id~~~~~l~~~~~~~~~~~~~~--------------~~~~l~~l~~~~~~~-~~~~~~~~~~k~~~~~~~k~~k~idk 90 (382)
..++.-+..++.+..+|...++.. ...++..|...++.+ ..++++.+..+.+...+.++.+.+..
T Consensus 22 ~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 22 QQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777778888887754332 267777888877765 45667888888888888888877776
Q ss_pred cCC
Q 016792 91 SFN 93 (382)
Q Consensus 91 ~f~ 93 (382)
.|.
T Consensus 102 ~~~ 104 (106)
T PF01920_consen 102 LFG 104 (106)
T ss_dssp CCS
T ss_pred Hhc
Confidence 653
No 279
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=25.41 E-value=1.9e+02 Score=30.54 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcc
Q 016792 110 VSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANS 173 (382)
Q Consensus 110 lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~ 173 (382)
+.-.+++|..+.|.++.|-.++.++ |.. .+...+.|..-.+|.. ..||+..|.+|++.-+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~a-I~h-tPt~~ely~~KarilK--h~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKA-IEH-TPTLVELYMTKARILK--HAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-Hhc-CCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
Confidence 4467899999999999999988765 322 2333344433333322 3577777777666543
No 280
>PRK04654 sec-independent translocase; Provisional
Probab=25.32 E-value=4.8e+02 Score=24.26 Aligned_cols=30 Identities=3% Similarity=0.081 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHhhhhhchhhhHHHHHHHH
Q 016792 3 LNDIKDAFDRVAKKQKLSCSKTQEVIDLIV 32 (382)
Q Consensus 3 ~~~~~~~~~~~~~k~~~~~~~~~~~id~~~ 32 (382)
|..+-+.+-+..+++|...+...+.+++.+
T Consensus 25 LPe~aRtlGk~irk~R~~~~~vk~El~~El 54 (214)
T PRK04654 25 LPKAARFAGLWVRRARMQWDSVKQELEREL 54 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666654444444444443
No 281
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=25.20 E-value=28 Score=21.96 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=4.1
Q ss_pred cccCCCCCcCCccc
Q 016792 363 FKCPYCPSDIDAAQ 376 (382)
Q Consensus 363 ~kCP~c~~~~~~~~ 376 (382)
.+||.|..++...|
T Consensus 3 p~Cp~C~se~~y~D 16 (30)
T PF08274_consen 3 PKCPLCGSEYTYED 16 (30)
T ss_dssp ---TTT-----EE-
T ss_pred CCCCCCCCcceecc
Confidence 58999999887644
No 282
>PRK04966 hypothetical protein; Provisional
Probab=25.16 E-value=1.6e+02 Score=22.46 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCCh
Q 016792 105 FDTHTVSQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNL 162 (382)
Q Consensus 105 ~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl 162 (382)
.+.+.++.+|-+|++|+|-. .|... .... ....++..+|++|..
T Consensus 8 L~~eTL~nLIeefv~ReGTd---------yG~~E--~sl~---~kv~qv~~qL~~G~~ 51 (72)
T PRK04966 8 LAPETLENLIESFVLREGTD---------YGEHE--RSLE---QKVADVKRQLQSGEA 51 (72)
T ss_pred CCHHHHHHHHHHHHhccCcc---------CCccc--ccHH---HHHHHHHHHHHcCCE
Confidence 45688999999999999952 33322 1111 224667777877764
No 283
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.15 E-value=4.2e+02 Score=22.34 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHhCcHHHHHHHHHHh
Q 016792 105 FDTHTVSQIIASHFYRQGLFEVGDCFISET 134 (382)
Q Consensus 105 ~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es 134 (382)
|.++.+.++....=+-.|..++-..|....
T Consensus 81 yTre~vE~~~~~Nq~~kGK~~a~~~fr~~L 110 (128)
T PF09748_consen 81 YTREFVELVRRENQYVKGKMEAFKSFRDVL 110 (128)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 557788888888877788777777666443
No 284
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=25.08 E-value=5.7e+02 Score=23.87 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhh-hhhhHhhHHHHHHHHHHHHHHHhhc
Q 016792 26 EVIDLIVQEIEKALETVKSASHLDDKYVLTELKRRLQDIAP-LGQLEGTQKELNIALSKYTKILEKS 91 (382)
Q Consensus 26 ~~id~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~k~~~~~~~k~~k~idk~ 91 (382)
..+..+.+.|..++......+..-...++.++...-..+.. .+.-..+--++-.+|++|.+.|...
T Consensus 175 ~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~ 241 (247)
T PF06705_consen 175 SKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQDG 241 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44444444455444433331111234455555544333211 1123333455667778888777643
No 285
>PRK04023 DNA polymerase II large subunit; Validated
Probab=25.05 E-value=47 Score=37.61 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhcCCchhh--------hHHHHHHHHHhHccc
Q 016792 199 GSREEALKYARANLAPFASN--------HVNEIQKLMACLIWA 233 (382)
Q Consensus 199 ~~~~eAl~yar~~l~~f~~~--------~~~eiq~lm~~L~f~ 233 (382)
-+..+|+.+++++=.|+.+. -.+++..|...+.-.
T Consensus 449 p~~~eA~~~s~~~~~PLHP~Yty~W~dis~ee~~~L~~~~~~~ 491 (1121)
T PRK04023 449 PSQEEALKISEEYGVPLHPKYTYLWHDISKEELEALRNALAGG 491 (1121)
T ss_pred CCHHHHHHHHHHcCCCCCCCeeeeeecCCHHHHHHHHHHHHhc
Confidence 46799999999987776543 246666666665543
No 286
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=25.02 E-value=26 Score=32.65 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=30.5
Q ss_pred cCCcccccccceeccccccccCCCCCCee--ccCchhhhHHHHHHHHhcCCCccccCCCCCcCCccccc
Q 016792 312 ELDKEFQFHSIFVCPVSKEQTSDDNPPMI--MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCR 378 (382)
Q Consensus 312 ~Lp~~~~~hS~~~Cpi~~~~~~~~Npp~~--l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~~~~~ 378 (382)
.++..++.|+.|+ ..-|||. |.||.-| -.+ -..||.|.......+-+
T Consensus 231 ~~~~~~~~~psFr---------qqpppMK~ClsChqqI--------HRN---APiCPlCKaKsRSrNPK 279 (286)
T KOG4451|consen 231 NLINRHRMPPSFR---------QQPPPMKVCLSCHQQI--------HRN---APICPLCKAKSRSRNPK 279 (286)
T ss_pred hcccccCCCcchh---------cCCCcchHHHHHHHHH--------hcC---CCCCcchhhccccCCCC
Confidence 4667788888888 1334553 5666544 333 36999999887665543
No 287
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=24.98 E-value=43 Score=36.46 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCCee--ccCchhhhHHHHHHHHhcCCCccccCCCCCc
Q 016792 336 NPPMI--MSCGHVLCRQSINKMSKNHSRTFKCPYCPSD 371 (382)
Q Consensus 336 Npp~~--l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~ 371 (382)
|||+. -.|||+. +..+.||.|+..
T Consensus 623 n~~~~~C~~CG~~~------------g~~~~CP~CG~~ 648 (656)
T PRK08270 623 TPTFSICPKHGYLS------------GEHEFCPKCGEE 648 (656)
T ss_pred CCCCcccCCCCCcC------------CCCCCCcCCcCc
Confidence 56644 4788751 225899999966
No 288
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=24.92 E-value=3.2e+02 Score=20.96 Aligned_cols=100 Identities=11% Similarity=-0.048 Sum_probs=51.8
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHH
Q 016792 113 IIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQF 192 (382)
Q Consensus 113 lI~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~f 192 (382)
-.+..+++.|.++-|.....+.--.. +......-..+....-....|+++.|+.+++..-..- . ++...-..+..--
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~~~~~~ 83 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-P-KSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-C-CCCcccHHHHHHH
Confidence 35666778888776666655442111 0100001111233344556799999999987643111 1 1111112222222
Q ss_pred HHHHHcCCHHHHHHHHHHhcCCc
Q 016792 193 VEILRKGSREEALKYARANLAPF 215 (382)
Q Consensus 193 IeLl~~~~~~eAl~yar~~l~~f 215 (382)
.-+.+.|+..+|+.+.++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 23456788889988888765544
No 289
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=24.84 E-value=31 Score=35.29 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=25.7
Q ss_pred ccceeccccccccCCCCC-CeeccCchhhhHHHHHHHH
Q 016792 320 HSIFVCPVSKEQTSDDNP-PMIMSCGHVLCRQSINKMS 356 (382)
Q Consensus 320 hS~~~Cpi~~~~~~~~Np-p~~l~cGhv~~~~~l~~l~ 356 (382)
-|+..||.|...++-.+. .=.--||.|+|++|.+-++
T Consensus 178 s~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iS 215 (505)
T KOG1842|consen 178 SSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFIS 215 (505)
T ss_pred CcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcC
Confidence 457789999886543221 0112699999999998775
No 290
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.83 E-value=5.3e+02 Score=24.42 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHhhcCCCChHhhhc
Q 016792 51 KYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYR 101 (382)
Q Consensus 51 ~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~k~~k~idk~f~~~l~~~~~ 101 (382)
+.-+.+.+..+.. ....+++...++-..|.++-+.=++.|..+++.+++
T Consensus 162 k~~~eK~k~~~~~--~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd 210 (253)
T cd07676 162 KADVEKARQQAQI--RHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQ 210 (253)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444555555543 333555666677777777777776777777777664
No 291
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=24.77 E-value=5e+02 Score=23.07 Aligned_cols=67 Identities=13% Similarity=0.246 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCh----HHHHHHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHhhcCCCC
Q 016792 26 EVIDLIVQEIEKALETVKSASHLDD----KYVLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPD 95 (382)
Q Consensus 26 ~~id~~~~~l~~~~~~~~~~~~~~~----~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~k~~k~idk~f~~~ 95 (382)
+...+....+.++..+|.......| ......|...+.+ .-.++....+.++.++..|-..|.+ |+..
T Consensus 88 ~~~~~~~~~l~~al~~l~~~~e~yP~Lka~~~~~~l~~~l~~--~E~~I~~aR~~YN~av~~yN~~i~~-FP~~ 158 (186)
T PF04011_consen 88 QEFQQAEAELSQALSRLLAVVENYPELKADENFQQLMAQLEE--TENRIAAARRAYNDAVRDYNTAIRQ-FPTN 158 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh-ccHH
Confidence 3334444445555554432211122 2334445444442 2237777788888899999888864 6543
No 292
>PF13395 HNH_4: HNH endonuclease
Probab=24.75 E-value=36 Score=24.12 Aligned_cols=13 Identities=38% Similarity=1.002 Sum_probs=10.7
Q ss_pred cCCCCCcCCcccc
Q 016792 365 CPYCPSDIDAAQC 377 (382)
Q Consensus 365 CP~c~~~~~~~~~ 377 (382)
||||++.....++
T Consensus 1 C~Y~g~~i~~~~l 13 (54)
T PF13395_consen 1 CPYCGKPISIENL 13 (54)
T ss_pred CCCCCCCCChhhc
Confidence 8999999887763
No 293
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=24.72 E-value=3.8e+02 Score=26.24 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=6.6
Q ss_pred hhhhhHhhHHHHHHH
Q 016792 66 PLGQLEGTQKELNIA 80 (382)
Q Consensus 66 ~~~~~~~~~k~~~~~ 80 (382)
.+++++++.|.+++.
T Consensus 260 ~LEkI~SREK~lNnq 274 (384)
T KOG0972|consen 260 ALEKIASREKSLNNQ 274 (384)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 294
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=24.66 E-value=3.3e+02 Score=21.05 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 016792 24 TQEVIDLIVQEIEKALE 40 (382)
Q Consensus 24 ~~~~id~~~~~l~~~~~ 40 (382)
....|+++.+.|....+
T Consensus 33 L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 33 LLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554443
No 295
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.35 E-value=5.5e+02 Score=27.77 Aligned_cols=22 Identities=5% Similarity=0.152 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 016792 23 KTQEVIDLIVQEIEKALETVKS 44 (382)
Q Consensus 23 ~~~~~id~~~~~l~~~~~~~~~ 44 (382)
+..+.+..+-.+|..+..+|+.
T Consensus 395 ~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 395 QLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444555555555555544
No 296
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=24.33 E-value=45 Score=33.75 Aligned_cols=16 Identities=25% Similarity=0.748 Sum_probs=14.8
Q ss_pred cCchhhhHHHHHHHHh
Q 016792 342 SCGHVLCRQSINKMSK 357 (382)
Q Consensus 342 ~cGhv~~~~~l~~l~~ 357 (382)
|||.||+++-|++++.
T Consensus 211 PcGnVys~~HL~kiae 226 (447)
T KOG0259|consen 211 PCGNVYSEDHLKKIAE 226 (447)
T ss_pred CCcccccHHHHHHHHH
Confidence 8999999999999865
No 297
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.11 E-value=3.5e+02 Score=31.57 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHc--CChHHHHHHHHhc-------chHhhhcCCchhhhchHHHHHHHHHcC--CHHHHHHHHHHh
Q 016792 143 ILSIFEDMYQILEAMKS--GNLEPALKWAAAN-------SDKLTQNGSDLQLKLHSLQFVEILRKG--SREEALKYARAN 211 (382)
Q Consensus 143 ~~~~f~~~~~I~~~L~~--gdl~~Al~W~~~n-------~~~L~~~~s~LeF~L~~q~fIeLl~~~--~~~eAl~yar~~ 211 (382)
+.....+..++++.++. -+.++|-+-++.. +....+ ++-|.+...++.-+.+.+. ++...=+.|.+-
T Consensus 1424 l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~--s~~el~~Li~~v~~Flt~~~adp~si~~vA~~v 1501 (1758)
T KOG0994|consen 1424 LRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEE--SNRELRNLIQQVRDFLTQPDADPDSIEEVAEEV 1501 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34455566666666653 3333333333322 212221 3344444455555555543 344444556665
Q ss_pred cCCchhhhHHHHHHHHHhHc
Q 016792 212 LAPFASNHVNEIQKLMACLI 231 (382)
Q Consensus 212 l~~f~~~~~~eiq~lm~~L~ 231 (382)
|.-..+.-.++|+.+++-+.
T Consensus 1502 L~l~lp~tpeqi~~L~~~I~ 1521 (1758)
T KOG0994|consen 1502 LALELPLTPEQIQQLTGEIQ 1521 (1758)
T ss_pred HhccCCCCHHHHHHHHHHHH
Confidence 55544445556666665543
No 298
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.03 E-value=6.9e+02 Score=24.51 Aligned_cols=18 Identities=11% Similarity=0.098 Sum_probs=12.7
Q ss_pred HHHHHHhCcHHHHHHHHH
Q 016792 115 ASHFYRQGLFEVGDCFIS 132 (382)
Q Consensus 115 ~~hLlR~G~~e~a~~f~~ 132 (382)
.+--.|+|+|+.|-.|..
T Consensus 113 m~~ci~~g~y~eALel~~ 130 (338)
T PF04124_consen 113 MDTCIRNGNYSEALELSA 130 (338)
T ss_pred HHHHHhcccHhhHHHHHH
Confidence 445668888888777654
No 299
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.01 E-value=4.8e+02 Score=22.66 Aligned_cols=57 Identities=9% Similarity=0.135 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHhhhhhhhhHhhHHHHHHHHHH
Q 016792 25 QEVIDLIVQEIEKALETVKSA--SHLDDKYVLTELKRRLQDIAPLGQLEGTQKELNIALSK 83 (382)
Q Consensus 25 ~~~id~~~~~l~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~k 83 (382)
......+-+.|-..+.+|+.. ++..+...+..|.+-|.. .-.++.+.+-+++..+.|
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~--Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMEN--LRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 344555666777777777664 333445556666665553 222666555555555555
No 300
>PHA03096 p28-like protein; Provisional
Probab=23.96 E-value=56 Score=31.72 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=34.3
Q ss_pred eeccccccccCCC---CC--CeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCc
Q 016792 323 FVCPVSKEQTSDD---NP--PMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDA 374 (382)
Q Consensus 323 ~~Cpi~~~~~~~~---Np--p~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~ 374 (382)
-+|.||.+...+. +. -++-.|-|++|..|+..|.......-.||-||.-.+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~ 235 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTV 235 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhH
Confidence 5788887755432 11 1334899999999999997654334567777765443
No 301
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=23.76 E-value=49 Score=27.49 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=7.7
Q ss_pred ccccCCCCCc
Q 016792 362 TFKCPYCPSD 371 (382)
Q Consensus 362 ~~kCP~c~~~ 371 (382)
.+.||.|+..
T Consensus 86 ~~~CP~Cgs~ 95 (115)
T TIGR00100 86 LYRCPKCHGI 95 (115)
T ss_pred CccCcCCcCC
Confidence 3689999864
No 302
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=23.45 E-value=41 Score=22.57 Aligned_cols=10 Identities=50% Similarity=1.079 Sum_probs=7.8
Q ss_pred cccCCCCCcC
Q 016792 363 FKCPYCPSDI 372 (382)
Q Consensus 363 ~kCP~c~~~~ 372 (382)
++||+|+...
T Consensus 1 m~Cp~Cg~~~ 10 (43)
T PF08271_consen 1 MKCPNCGSKE 10 (43)
T ss_dssp ESBTTTSSSE
T ss_pred CCCcCCcCCc
Confidence 4799998865
No 303
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=23.31 E-value=74 Score=23.36 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=7.8
Q ss_pred ccccCCCCCc
Q 016792 362 TFKCPYCPSD 371 (382)
Q Consensus 362 ~~kCP~c~~~ 371 (382)
.++||.|+-+
T Consensus 48 ~Y~CP~CGF~ 57 (59)
T PRK14890 48 PYTCPKCGFE 57 (59)
T ss_pred ceECCCCCCc
Confidence 6899999754
No 304
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.26 E-value=4.8e+02 Score=24.18 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=43.3
Q ss_pred HHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHh
Q 016792 114 IASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKL 176 (382)
Q Consensus 114 I~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L 176 (382)
|+.-|+++|..+.|-.+.+-.+-...+. .........|.+|++.+|..|.+.+....
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~------~~~~~~~~~La~~~v~EAf~~~R~~~~~~ 170 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSP------EALTLYFVALANGLVTEAFSFQRSYPDEL 170 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCH------HHHHHHHHHHHcCCHHHHHHHHHhCchhh
Confidence 7778888999999999999887654122 22344455589999999999999987643
No 305
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=23.19 E-value=3e+02 Score=29.29 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHhhh
Q 016792 2 ELNDIKDAFDRVAKKQ 17 (382)
Q Consensus 2 ~~~~~~~~~~~~~~k~ 17 (382)
+---|+.|+||+.||-
T Consensus 2 ~~RKLq~eIdr~lkKv 17 (575)
T KOG2150|consen 2 AKRKLQQEIDRCLKKV 17 (575)
T ss_pred chhHHHHHHHHHHHHh
Confidence 3345788888888874
No 306
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=23.01 E-value=67 Score=36.73 Aligned_cols=54 Identities=19% Similarity=0.431 Sum_probs=38.2
Q ss_pred ccccceecccccccc--CC-CCCCee-ccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 318 QFHSIFVCPVSKEQT--SD-DNPPMI-MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 318 ~~hS~~~Cpi~~~~~--~~-~Npp~~-l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
+-.+-=+|-|||+.. +. ..|.|. --||--.|+.|.+-=.+.+ .--||.|+..|.
T Consensus 13 ~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG--~q~CPqCktrYk 70 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDG--NQSCPQCKTKYK 70 (1079)
T ss_pred cccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcC--CccCCccCCchh
Confidence 344555999999974 33 344443 5889999999995444443 569999999887
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.99 E-value=5.6e+02 Score=28.82 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHhCcHHHHHHH-HHHhCCCc
Q 016792 106 DTHTVSQIIASHFYRQGLFEVGDCF-ISETKESE 138 (382)
Q Consensus 106 ~~~~lnrlI~~hLlR~G~~e~a~~f-~~Es~~~~ 138 (382)
....+.+--++||++.|.|+.|-.- ++-.|..+
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 3466778889999999988766543 34445444
No 308
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=22.96 E-value=4.7e+02 Score=25.88 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=54.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHH
Q 016792 114 IASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFV 193 (382)
Q Consensus 114 I~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fI 193 (382)
-+.-+++.|.++.|..+..++=-.. +.....+..+ -.-.+..|+++.|+..++..- .+.. .. ...+...-+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~--a~~~~~~g~~~eAl~~~~~Al-~l~P--~~--~~a~~~lg~ 78 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADR--AQANIKLGNFTEAVADANKAI-ELDP--SL--AKAYLRKGT 78 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHH-HhCc--CC--HHHHHHHHH
Confidence 3677788888888887776652212 2233333222 233455799999999987642 1211 12 223334445
Q ss_pred HHHHcCCHHHHHHHHHHhcC
Q 016792 194 EILRKGSREEALKYARANLA 213 (382)
Q Consensus 194 eLl~~~~~~eAl~yar~~l~ 213 (382)
-+...|++.+|+.+.++-+.
T Consensus 79 ~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 55677899999998887543
No 309
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.93 E-value=5.9e+02 Score=25.56 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016792 26 EVIDLIVQEIEKALETV 42 (382)
Q Consensus 26 ~~id~~~~~l~~~~~~~ 42 (382)
..++++-+.+....++|
T Consensus 241 ~~L~kl~~~i~~~lekI 257 (359)
T PF10498_consen 241 SQLDKLQQDISKTLEKI 257 (359)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 310
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=22.51 E-value=36 Score=19.48 Aligned_cols=11 Identities=36% Similarity=1.077 Sum_probs=6.8
Q ss_pred cccCCCCCcCC
Q 016792 363 FKCPYCPSDID 373 (382)
Q Consensus 363 ~kCP~c~~~~~ 373 (382)
++||.|+-...
T Consensus 1 y~C~~C~y~t~ 11 (24)
T PF13909_consen 1 YKCPHCSYSTS 11 (24)
T ss_dssp EE-SSSS-EES
T ss_pred CCCCCCCCcCC
Confidence 58999986654
No 311
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.29 E-value=52 Score=19.23 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=7.2
Q ss_pred ccCCCCCcCCc
Q 016792 364 KCPYCPSDIDA 374 (382)
Q Consensus 364 kCP~c~~~~~~ 374 (382)
+||.|+.+...
T Consensus 1 ~Cp~CG~~~~~ 11 (23)
T PF13240_consen 1 YCPNCGAEIED 11 (23)
T ss_pred CCcccCCCCCC
Confidence 47777777653
No 312
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=22.20 E-value=1.9e+02 Score=19.55 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=16.9
Q ss_pred hhhHhhHHHHHHHHHHHHHHHhh
Q 016792 68 GQLEGTQKELNIALSKYTKILEK 90 (382)
Q Consensus 68 ~~~~~~~k~~~~~~~k~~k~idk 90 (382)
=+++...|+...++.++.|.||.
T Consensus 14 ~rle~eirett~sl~ninksidq 36 (46)
T PF08181_consen 14 WRLENEIRETTDSLRNINKSIDQ 36 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 36666777777788888888774
No 313
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.17 E-value=4.1e+02 Score=21.24 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--------------hHHHHHHHHHHHHhh-hhhhhhHhhHHHHHHHHHHHHHHHh
Q 016792 26 EVIDLIVQEIEKALETVKSASHLD--------------DKYVLTELKRRLQDI-APLGQLEGTQKELNIALSKYTKILE 89 (382)
Q Consensus 26 ~~id~~~~~l~~~~~~~~~~~~~~--------------~~~~l~~l~~~~~~~-~~~~~~~~~~k~~~~~~~k~~k~id 89 (382)
..++.-+.+...+.++|...++.+ ...+...|...++.+ ..++++++..+.+...++.+.+.|.
T Consensus 23 ~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 23 QKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777776543222 134444444444443 2344555555555555555544444
No 314
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.15 E-value=73 Score=36.31 Aligned_cols=52 Identities=19% Similarity=0.529 Sum_probs=37.1
Q ss_pred ccceecccccccc--CCCCCCee--ccCchhhhHHHHHHHHhcCCCccccCCCCCcCC
Q 016792 320 HSIFVCPVSKEQT--SDDNPPMI--MSCGHVLCRQSINKMSKNHSRTFKCPYCPSDID 373 (382)
Q Consensus 320 hS~~~Cpi~~~~~--~~~Npp~~--l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~ 373 (382)
-+.-+|-|||+.. +.+.-|++ --||.-+|+.|.+-=.+.+ +--||.|+..|.
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g--~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEG--NQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcC--CccCCccCCchh
Confidence 3566999999974 33333433 5888889999995434333 569999999887
No 315
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=22.08 E-value=4.3e+02 Score=29.51 Aligned_cols=123 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHhhhccccCCHHHHHHHH-------HHHHHHhCcHHHHHHHHHHhCCCcchhhhHHHH
Q 016792 75 KELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQII-------ASHFYRQGLFEVGDCFISETKESECSAAILSIF 147 (382)
Q Consensus 75 k~~~~~~~k~~k~idk~f~~~l~~~~~~~~~~~~~lnrlI-------~~hLlR~G~~e~a~~f~~Es~~~~~~~~~~~~f 147 (382)
++|..+ .++.|.++-...+.+++.|..+--++..+..+| .+-+..+|++|-+-.-++..+-.. +.+.|
T Consensus 1253 eewaka-kqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak~qnykp----il~ky 1327 (1636)
T KOG3616|consen 1253 EEWAKA-KQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAKKQNYKP----ILDKY 1327 (1636)
T ss_pred HHHHHH-HHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHHhcccHH----HHHHH
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHH
Q 016792 148 EDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKY 207 (382)
Q Consensus 148 ~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~y 207 (382)
..++. ...|++||+..|+.....+. ....+-.|.++++-|-+++......=|=.|
T Consensus 1328 va~ya-a~li~~~d~aq~lal~~q~g----a~anpanfniyk~i~ed~lakpgt~~~eay 1382 (1636)
T KOG3616|consen 1328 VALYA-AHLIHEGDLAQALALLEQHG----APANPANFNIYKLIFEDMLAKPGTNCAEAY 1382 (1636)
T ss_pred HHHHH-HHHHhcCcHHHHHHHHHHhC----CCCCcccccHHHHHHHHHhcCCCcchHHHH
No 316
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=22.05 E-value=2.9e+02 Score=20.15 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=27.0
Q ss_pred CCchHHHHHHHHHHhhhhhch---hhhHHHHHHHHHHHHHHHHHH
Q 016792 1 MELNDIKDAFDRVAKKQKLSC---SKTQEVIDLIVQEIEKALETV 42 (382)
Q Consensus 1 ~~~~~~~~~~~~~~~k~~~~~---~~~~~~id~~~~~l~~~~~~~ 42 (382)
|++..+++.+-.+.|.++... +...+.|+++-.+++-.|.-+
T Consensus 1 ~~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 1 MRIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 666777777777766665533 335567777777777766543
No 317
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.86 E-value=44 Score=24.37 Aligned_cols=29 Identities=28% Similarity=0.859 Sum_probs=20.9
Q ss_pred CeeccCchhhhHHHHHHHHhcCCCccccCCCCCcCCc
Q 016792 338 PMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDA 374 (382)
Q Consensus 338 p~~l~cGhv~~~~~l~~l~~~~~~~~kCP~c~~~~~~ 374 (382)
|--|.||-|||.. .+. ...||+|+...-.
T Consensus 19 ~NCl~CGkIiC~~-------Eg~-~~pC~fCg~~l~~ 47 (57)
T PF06221_consen 19 PNCLNCGKIICEQ-------EGP-LGPCPFCGTPLLS 47 (57)
T ss_pred ccccccChhhccc-------ccC-cCcCCCCCCcccC
Confidence 5679999999975 221 3699999965543
No 318
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=21.75 E-value=97 Score=30.06 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHhCcHHHHHHHHHHhCC
Q 016792 106 DTHTVSQIIASHFYRQGLFEVGDCFISETKE 136 (382)
Q Consensus 106 ~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~ 136 (382)
.++.|..-|.+||++.|-+.+|++|+.|...
T Consensus 16 ArekLa~YvYEYLlhvgaqksaqtflseirw 46 (354)
T KOG4594|consen 16 AREKLALYVYEYLLHVGAQKSAQTFLSEIRW 46 (354)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 3677888999999999999999999987643
No 319
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.58 E-value=27 Score=29.95 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=9.6
Q ss_pred ceeccccccccCC
Q 016792 322 IFVCPVSKEQTSD 334 (382)
Q Consensus 322 ~~~Cpi~~~~~~~ 334 (382)
.+.|+.||..+..
T Consensus 70 ~~~C~~CG~~~~~ 82 (135)
T PRK03824 70 VLKCRNCGNEWSL 82 (135)
T ss_pred EEECCCCCCEEec
Confidence 6788888876654
No 320
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.49 E-value=38 Score=20.49 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=4.2
Q ss_pred cccccccc
Q 016792 325 CPVSKEQT 332 (382)
Q Consensus 325 Cpi~~~~~ 332 (382)
||-|+.+.
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555544
No 321
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.33 E-value=1.1e+03 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=21.9
Q ss_pred chHHHHHHHHHcCCHHHHHHHHHHhcCCch
Q 016792 187 LHSLQFVEILRKGSREEALKYARANLAPFA 216 (382)
Q Consensus 187 L~~q~fIeLl~~~~~~eAl~yar~~l~~f~ 216 (382)
|-.-+|.+-++++|..+.-.|.+ -||+.+
T Consensus 195 l~~~~f~eA~r~~D~~ei~RffK-mFPliG 223 (773)
T KOG0412|consen 195 LFKERFTEAVRKQDLKEITRFFK-MFPLIG 223 (773)
T ss_pred HHHHHHHHHHhcccHHHHHHHHH-HccccC
Confidence 44557888888888888888887 566654
No 322
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.17 E-value=6.6e+02 Score=23.17 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=55.3
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHhhcCCCChHhhhccccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHhCCCcch--hhh
Q 016792 66 PLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHTVSQIIASHFYRQGLFEVGDCFISETKESECS--AAI 143 (382)
Q Consensus 66 ~~~~~~~~~k~~~~~~~k~~k~idk~f~~~l~~~~~~~~~~~~~lnrlI~~hLlR~G~~e~a~~f~~Es~~~~~~--~~~ 143 (382)
.++...+..++.+..+++..+.++- | +++--+.....-.+.++.-.+..+++..|....- .|.|++..+ .-.
T Consensus 44 ~~eeA~~~l~~a~~~v~~Lk~~l~~-~-pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~----~EL~V~~~~YilGl 117 (204)
T COG2178 44 DFEEAEKKLKKASEAVEKLKRLLAG-F-PELYFAGFVTTALQEYVEATLLYSILKDGRLPSP----EELGVPPIAYILGL 117 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCH----HHcCCCHHHHHHHH
Confidence 4667777788888888888888773 1 2222111111223555666666666666643322 244554311 112
Q ss_pred HHHHHH-HHHHHHHHHcCChHHHHHHHH
Q 016792 144 LSIFED-MYQILEAMKSGNLEPALKWAA 170 (382)
Q Consensus 144 ~~~f~~-~~~I~~~L~~gdl~~Al~W~~ 170 (382)
.|..-+ +...+..+++|+++.|-...+
T Consensus 118 ~D~vGELrR~~le~l~~~~~~~Ae~~~~ 145 (204)
T COG2178 118 ADAVGELRRHVLELLRKGSFEEAERFLK 145 (204)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 233333 445678888999999877654
No 323
>PLN02372 violaxanthin de-epoxidase
Probab=21.17 E-value=6.1e+02 Score=26.09 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=14.1
Q ss_pred hhHhhHHHHHHHHHHHHHHHhhcCCCC
Q 016792 69 QLEGTQKELNIALSKYTKILEKSFNPD 95 (382)
Q Consensus 69 ~~~~~~k~~~~~~~k~~k~idk~f~~~ 95 (382)
.+.+..+++-..+.+-...++|+|..+
T Consensus 425 ~lskee~~~l~~~~~~~~~vek~f~~~ 451 (455)
T PLN02372 425 ELSKEEKELLEKLKMEASEVEKLFGRA 451 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444444555555555555566666543
No 324
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=21.11 E-value=5.6e+02 Score=22.35 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=25.1
Q ss_pred ChHHHHHHHHhcchHhhhcCCchhhhchHHHHHHHHHcCCHHHHHHHHHHhcC
Q 016792 161 NLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVEILRKGSREEALKYARANLA 213 (382)
Q Consensus 161 dl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIeLl~~~~~~eAl~yar~~l~ 213 (382)
.++.||+|+++|...-+. ..++.+|=+++ ..|+...|.++.
T Consensus 103 ~LD~cl~Fl~~h~~fkea-------~~Y~~rf~q~l-----tRAl~lIk~y~~ 143 (157)
T PF04136_consen 103 RLDECLEFLEEHPNFKEA-------EVYLIRFRQCL-----TRALTLIKNYVV 143 (157)
T ss_pred HHHHHHHHHHHhhhhhhh-------HHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 578999999998644333 45555555554 245555555543
No 325
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.77 E-value=6.5e+02 Score=22.96 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhh-hhhhhhHhhHHHHHHHHHHHHHHHhhcC
Q 016792 51 KYVLTELKRRLQDI-APLGQLEGTQKELNIALSKYTKILEKSF 92 (382)
Q Consensus 51 ~~~l~~l~~~~~~~-~~~~~~~~~~k~~~~~~~k~~k~idk~f 92 (382)
+.-+..|...++.+ ..++.+.+.++++-.++..+|+.+..+-
T Consensus 10 k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~ 52 (216)
T cd07627 10 KQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALS 52 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665 4566788888888888888888888764
No 326
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=20.66 E-value=1.1e+03 Score=25.65 Aligned_cols=20 Identities=5% Similarity=0.208 Sum_probs=10.6
Q ss_pred ccCChHHHHHHHHHHHHHHh
Q 016792 246 SQTNWVTVAEELTRQFCNLV 265 (382)
Q Consensus 246 ~~~~w~~l~~~F~~e~c~l~ 265 (382)
++..|..+...+......+|
T Consensus 225 d~~~y~~L~~~Y~~~~~~ly 244 (701)
T PF09763_consen 225 DPESYQALIKAYNSSMSKLY 244 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45566666655554444433
No 327
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.51 E-value=86 Score=27.43 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=16.3
Q ss_pred hHHHHHHHHhcCCCccccCCCCCcC
Q 016792 348 CRQSINKMSKNHSRTFKCPYCPSDI 372 (382)
Q Consensus 348 ~~~~l~~l~~~~~~~~kCP~c~~~~ 372 (382)
|.+.+.+....+ -+.||+|+..-
T Consensus 20 ss~~fd~Q~~~g--lv~CP~Cgs~~ 42 (148)
T PF06676_consen 20 SSAAFDRQQARG--LVSCPVCGSTE 42 (148)
T ss_pred CHHHHHHHHHcC--CccCCCCCCCe
Confidence 446666666554 69999998753
No 328
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=20.03 E-value=7.1e+02 Score=23.15 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHH
Q 016792 107 THTVSQIIASHFYRQGLFEVGDCF 130 (382)
Q Consensus 107 ~~~lnrlI~~hLlR~G~~e~a~~f 130 (382)
.+.+.++|..||..+|..++++.+
T Consensus 164 ~~~~~~~vl~~l~~n~~~~v~E~~ 187 (217)
T COG1777 164 GDMTERIVLEYLLKNGAADVEETS 187 (217)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHH
Confidence 345778999999999966666554
No 329
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=20.01 E-value=1.8e+02 Score=23.84 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcchHhhhcCCchhhhchHHHHHH
Q 016792 148 EDMYQILEAMKSGNLEPALKWAAANSDKLTQNGSDLQLKLHSLQFVE 194 (382)
Q Consensus 148 ~~~~~I~~~L~~gdl~~Al~W~~~n~~~L~~~~s~LeF~L~~q~fIe 194 (382)
..+..|.+++.++||+.|-.-+.+-...-.+....+.|-+..+++=.
T Consensus 30 ~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~ 76 (121)
T PF14276_consen 30 EQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDN 76 (121)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHH
Confidence 44678899999999999999999988888888888888888777644
Done!