Query 016793
Match_columns 382
No_of_seqs 248 out of 1584
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.3 7.8E-13 1.7E-17 94.3 2.1 44 33-76 1-44 (44)
2 PHA02929 N1R/p28-like protein; 99.1 1.2E-10 2.5E-15 111.5 4.5 56 26-81 168-228 (238)
3 KOG4628 Predicted E3 ubiquitin 99.0 6.6E-11 1.4E-15 118.2 2.5 49 33-81 230-279 (348)
4 KOG0823 Predicted E3 ubiquitin 99.0 1.1E-10 2.3E-15 110.2 3.5 55 28-85 43-100 (230)
5 PF12678 zf-rbx1: RING-H2 zinc 99.0 2.4E-10 5.3E-15 90.5 3.9 45 32-76 19-73 (73)
6 PLN03208 E3 ubiquitin-protein 99.0 2.2E-10 4.8E-15 106.1 3.9 53 28-83 14-82 (193)
7 KOG0317 Predicted E3 ubiquitin 99.0 2.2E-10 4.8E-15 111.0 3.2 57 24-83 231-287 (293)
8 smart00504 Ubox Modified RING 98.9 1.1E-09 2.4E-14 82.8 5.0 57 32-91 1-57 (63)
9 PF13923 zf-C3HC4_2: Zinc fing 98.9 6.6E-10 1.4E-14 77.4 2.3 39 35-75 1-39 (39)
10 PF13920 zf-C3HC4_3: Zinc fing 98.9 9.2E-10 2E-14 80.5 3.2 47 31-80 1-48 (50)
11 KOG0320 Predicted E3 ubiquitin 98.8 9.8E-10 2.1E-14 100.2 2.2 55 29-84 128-182 (187)
12 PF15227 zf-C3HC4_4: zinc fing 98.8 2.2E-09 4.9E-14 76.4 2.9 38 35-75 1-42 (42)
13 COG5243 HRD1 HRD ubiquitin lig 98.8 2.1E-09 4.5E-14 107.3 3.4 54 29-82 284-347 (491)
14 COG5540 RING-finger-containing 98.8 2.4E-09 5.2E-14 104.5 3.1 49 33-81 324-373 (374)
15 cd00162 RING RING-finger (Real 98.8 4E-09 8.6E-14 72.9 3.4 44 34-79 1-45 (45)
16 TIGR00599 rad18 DNA repair pro 98.8 4.2E-09 9.2E-14 107.4 4.8 59 32-93 26-84 (397)
17 PHA02926 zinc finger-like prot 98.8 3.8E-09 8.3E-14 99.5 3.4 60 23-82 161-232 (242)
18 PF12861 zf-Apc11: Anaphase-pr 98.7 8E-09 1.7E-13 84.2 3.6 51 32-82 21-84 (85)
19 KOG0287 Postreplication repair 98.7 8.2E-09 1.8E-13 102.1 2.6 61 32-95 23-83 (442)
20 KOG0311 Predicted E3 ubiquitin 98.7 3.6E-09 7.8E-14 105.1 -0.1 88 32-135 43-132 (381)
21 PF00097 zf-C3HC4: Zinc finger 98.7 1.3E-08 2.7E-13 71.1 2.4 39 35-75 1-41 (41)
22 PF14634 zf-RING_5: zinc-RING 98.6 2.1E-08 4.5E-13 71.7 3.2 44 34-77 1-44 (44)
23 KOG2164 Predicted E3 ubiquitin 98.6 1.8E-08 4E-13 104.2 2.4 53 32-87 186-243 (513)
24 PF04564 U-box: U-box domain; 98.6 7.2E-08 1.6E-12 76.1 4.4 61 31-94 3-64 (73)
25 smart00184 RING Ring finger. E 98.5 1.1E-07 2.4E-12 63.3 3.3 38 35-75 1-39 (39)
26 COG5574 PEX10 RING-finger-cont 98.5 5.7E-08 1.2E-12 93.5 2.3 51 30-83 213-265 (271)
27 KOG0802 E3 ubiquitin ligase [P 98.4 6.6E-08 1.4E-12 102.5 2.1 51 30-80 289-341 (543)
28 PF13445 zf-RING_UBOX: RING-ty 98.3 2.9E-07 6.3E-12 66.1 2.4 38 35-73 1-43 (43)
29 KOG2177 Predicted E3 ubiquitin 98.3 2.5E-07 5.5E-12 85.6 1.8 44 31-77 12-55 (386)
30 COG5432 RAD18 RING-finger-cont 98.2 4.9E-07 1.1E-11 88.2 2.6 47 32-81 25-71 (391)
31 COG5194 APC11 Component of SCF 98.2 6.8E-07 1.5E-11 71.8 2.5 36 48-83 49-84 (88)
32 PF14835 zf-RING_6: zf-RING of 98.2 5.2E-07 1.1E-11 69.9 1.7 58 32-93 7-64 (65)
33 TIGR00570 cdk7 CDK-activating 98.2 1.1E-06 2.4E-11 87.0 3.7 54 32-85 3-59 (309)
34 KOG1493 Anaphase-promoting com 98.1 8.3E-07 1.8E-11 70.8 0.7 51 32-82 20-83 (84)
35 KOG0828 Predicted E3 ubiquitin 97.9 5.6E-06 1.2E-10 85.7 2.4 50 32-81 571-635 (636)
36 KOG1039 Predicted E3 ubiquitin 97.9 7.6E-06 1.6E-10 82.4 3.1 60 23-82 152-223 (344)
37 KOG1734 Predicted RING-contain 97.8 6.4E-06 1.4E-10 79.8 0.7 55 28-82 220-283 (328)
38 PF11793 FANCL_C: FANCL C-term 97.8 5E-06 1.1E-10 65.5 -0.5 50 32-81 2-67 (70)
39 KOG2930 SCF ubiquitin ligase, 97.7 1.2E-05 2.6E-10 67.6 1.4 51 31-81 45-109 (114)
40 KOG1785 Tyrosine kinase negati 97.7 4E-05 8.7E-10 77.8 5.1 49 33-84 370-420 (563)
41 KOG4172 Predicted E3 ubiquitin 97.7 1.2E-05 2.6E-10 60.4 0.5 47 31-80 6-54 (62)
42 smart00744 RINGv The RING-vari 97.7 4.1E-05 8.9E-10 56.3 3.1 42 34-76 1-49 (49)
43 KOG0978 E3 ubiquitin ligase in 97.6 1.4E-05 3.1E-10 86.3 0.7 50 32-84 643-693 (698)
44 KOG2660 Locus-specific chromos 97.6 2.3E-05 4.9E-10 77.9 0.8 49 32-82 15-63 (331)
45 KOG0824 Predicted E3 ubiquitin 97.6 4.1E-05 8.9E-10 75.3 2.5 48 32-82 7-55 (324)
46 COG5219 Uncharacterized conser 97.5 2.3E-05 5E-10 86.1 0.7 50 31-80 1468-1523(1525)
47 KOG4159 Predicted E3 ubiquitin 97.5 5.4E-05 1.2E-09 77.7 2.9 59 20-81 72-130 (398)
48 KOG4265 Predicted E3 ubiquitin 97.5 6.8E-05 1.5E-09 75.2 3.1 48 30-80 288-336 (349)
49 KOG0825 PHD Zn-finger protein 97.4 2.5E-05 5.5E-10 84.4 -0.5 54 28-81 119-172 (1134)
50 KOG4445 Uncharacterized conser 97.4 4.3E-05 9.4E-10 75.1 0.6 51 32-82 115-188 (368)
51 KOG0804 Cytoplasmic Zn-finger 97.4 6.6E-05 1.4E-09 77.2 1.4 48 31-80 174-222 (493)
52 KOG1645 RING-finger-containing 97.2 0.0002 4.3E-09 73.0 2.8 52 32-83 4-59 (463)
53 KOG0827 Predicted E3 ubiquitin 97.2 0.00018 3.8E-09 73.0 2.2 47 33-79 5-55 (465)
54 KOG1813 Predicted E3 ubiquitin 97.1 0.00031 6.6E-09 69.1 2.4 59 33-94 242-300 (313)
55 KOG4692 Predicted E3 ubiquitin 97.0 0.00041 9E-09 69.7 2.9 56 23-81 413-468 (489)
56 KOG0297 TNF receptor-associate 97.0 0.00029 6.3E-09 72.3 1.8 52 31-84 20-71 (391)
57 PF11789 zf-Nse: Zinc-finger o 97.0 0.00031 6.7E-09 53.3 1.3 41 32-74 11-53 (57)
58 KOG2879 Predicted E3 ubiquitin 97.0 0.00051 1.1E-08 67.0 3.2 50 29-80 236-287 (298)
59 KOG1002 Nucleotide excision re 96.9 0.00041 8.8E-09 72.8 2.2 69 10-83 516-589 (791)
60 COG5152 Uncharacterized conser 96.8 0.00037 8.1E-09 65.2 0.9 47 32-81 196-242 (259)
61 KOG3970 Predicted E3 ubiquitin 96.7 0.0027 5.8E-08 60.6 5.9 53 31-84 49-109 (299)
62 KOG1428 Inhibitor of type V ad 96.7 0.0013 2.7E-08 75.4 3.7 74 27-101 3482-3570(3738)
63 KOG1814 Predicted E3 ubiquitin 96.2 0.0047 1E-07 63.3 3.9 47 32-78 184-238 (445)
64 COG5222 Uncharacterized conser 96.1 0.0044 9.5E-08 61.3 3.3 50 33-84 275-326 (427)
65 KOG3039 Uncharacterized conser 96.0 0.0057 1.2E-07 59.1 3.4 54 31-84 220-274 (303)
66 PF14570 zf-RING_4: RING/Ubox 95.8 0.0076 1.7E-07 44.4 2.6 45 35-79 1-47 (48)
67 KOG1941 Acetylcholine receptor 95.7 0.0036 7.8E-08 63.8 0.9 48 30-77 363-413 (518)
68 KOG4275 Predicted E3 ubiquitin 95.7 0.002 4.3E-08 63.5 -1.2 42 32-80 300-342 (350)
69 KOG1571 Predicted E3 ubiquitin 95.5 0.0074 1.6E-07 61.0 2.0 48 28-81 301-348 (355)
70 KOG4739 Uncharacterized protei 95.3 0.0058 1.3E-07 58.7 0.7 46 33-81 4-49 (233)
71 KOG4185 Predicted E3 ubiquitin 95.3 0.017 3.6E-07 56.6 3.9 50 33-82 4-57 (296)
72 KOG0826 Predicted E3 ubiquitin 95.3 0.015 3.2E-07 58.3 3.3 55 24-80 292-346 (357)
73 KOG3268 Predicted E3 ubiquitin 95.1 0.017 3.7E-07 53.5 2.9 54 29-82 162-230 (234)
74 PHA03096 p28-like protein; Pro 94.9 0.014 3E-07 57.8 2.1 45 33-77 179-231 (284)
75 COG5175 MOT2 Transcriptional r 94.9 0.016 3.6E-07 58.2 2.5 53 31-83 13-67 (480)
76 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.028 6.1E-07 54.6 3.8 53 30-83 111-164 (260)
77 COG5236 Uncharacterized conser 94.6 0.024 5.2E-07 57.2 3.0 51 26-79 55-107 (493)
78 PF05883 Baculo_RING: Baculovi 94.6 0.017 3.7E-07 51.1 1.6 45 32-76 26-76 (134)
79 KOG1940 Zn-finger protein [Gen 94.0 0.032 6.9E-07 55.0 2.2 53 28-81 154-207 (276)
80 PF12906 RINGv: RING-variant d 93.8 0.038 8.3E-07 40.2 1.8 40 35-75 1-47 (47)
81 KOG1952 Transcription factor N 93.5 0.035 7.6E-07 61.4 1.8 47 32-78 191-245 (950)
82 PF10367 Vps39_2: Vacuolar sor 93.3 0.032 6.9E-07 45.8 0.8 33 30-63 76-108 (109)
83 KOG1001 Helicase-like transcri 93.1 0.036 7.7E-07 60.9 1.0 46 33-82 455-502 (674)
84 PF03854 zf-P11: P-11 zinc fin 93.1 0.035 7.6E-07 40.8 0.6 44 34-82 4-48 (50)
85 KOG2114 Vacuolar assembly/sort 93.1 0.063 1.4E-06 59.5 2.7 42 32-78 840-881 (933)
86 KOG0298 DEAD box-containing he 92.9 0.03 6.5E-07 64.3 0.0 44 33-78 1154-1197(1394)
87 KOG2817 Predicted E3 ubiquitin 92.8 0.084 1.8E-06 54.1 3.1 44 32-75 334-380 (394)
88 KOG2932 E3 ubiquitin ligase in 92.5 0.055 1.2E-06 54.0 1.3 43 33-79 91-133 (389)
89 PF08746 zf-RING-like: RING-li 92.0 0.071 1.5E-06 38.2 1.0 41 35-75 1-43 (43)
90 PHA02825 LAP/PHD finger-like p 91.9 0.14 3.1E-06 46.6 3.0 47 31-81 7-60 (162)
91 PHA02862 5L protein; Provision 91.8 0.12 2.7E-06 46.4 2.5 46 32-81 2-54 (156)
92 KOG4367 Predicted Zn-finger pr 91.7 0.1 2.2E-06 54.2 2.1 35 30-67 2-36 (699)
93 PF07800 DUF1644: Protein of u 91.7 0.17 3.7E-06 46.0 3.4 50 31-83 1-94 (162)
94 KOG3002 Zn finger protein [Gen 91.4 0.13 2.8E-06 51.3 2.5 46 30-80 46-91 (299)
95 PF14447 Prok-RING_4: Prokaryo 90.9 0.13 2.9E-06 38.9 1.6 47 32-83 7-53 (55)
96 KOG0801 Predicted E3 ubiquitin 90.7 0.09 2E-06 48.1 0.5 30 30-59 175-204 (205)
97 PF10272 Tmpp129: Putative tra 88.5 0.25 5.5E-06 50.5 1.9 31 53-83 311-354 (358)
98 KOG3800 Predicted E3 ubiquitin 87.8 0.54 1.2E-05 46.6 3.6 49 34-82 2-53 (300)
99 COG5220 TFB3 Cdk activating ki 87.7 0.26 5.7E-06 47.7 1.4 51 28-78 6-62 (314)
100 KOG0827 Predicted E3 ubiquitin 87.1 0.064 1.4E-06 54.9 -3.2 53 30-82 194-247 (465)
101 KOG4362 Transcriptional regula 87.1 0.16 3.6E-06 55.5 -0.4 47 32-81 21-70 (684)
102 KOG3899 Uncharacterized conser 84.3 0.46 1E-05 47.3 1.2 31 53-83 325-368 (381)
103 COG5183 SSM4 Protein involved 83.4 0.7 1.5E-05 51.4 2.2 53 29-82 9-68 (1175)
104 PF05290 Baculo_IE-1: Baculovi 83.4 0.84 1.8E-05 40.6 2.3 55 28-82 76-134 (140)
105 KOG1812 Predicted E3 ubiquitin 83.2 0.42 9.1E-06 49.2 0.4 49 32-80 146-203 (384)
106 KOG2034 Vacuolar sorting prote 83.0 0.58 1.3E-05 52.4 1.4 35 32-67 817-851 (911)
107 KOG0825 PHD Zn-finger protein 82.9 0.81 1.8E-05 50.8 2.5 53 27-79 91-153 (1134)
108 KOG0309 Conserved WD40 repeat- 82.1 0.81 1.8E-05 50.6 2.1 42 32-74 1028-1069(1081)
109 KOG3579 Predicted E3 ubiquitin 81.1 0.82 1.8E-05 45.4 1.6 41 26-69 262-306 (352)
110 KOG3053 Uncharacterized conser 81.1 1.2 2.5E-05 43.8 2.5 53 30-82 18-84 (293)
111 COG5109 Uncharacterized conser 81.1 1.1 2.3E-05 45.2 2.3 45 32-76 336-383 (396)
112 KOG1100 Predicted E3 ubiquitin 80.3 0.77 1.7E-05 43.5 1.1 38 35-79 161-199 (207)
113 PF02891 zf-MIZ: MIZ/SP-RING z 78.9 1.8 3.8E-05 31.9 2.4 43 33-78 3-50 (50)
114 KOG4718 Non-SMC (structural ma 77.1 1.1 2.5E-05 42.6 1.1 45 32-78 181-225 (235)
115 KOG1815 Predicted E3 ubiquitin 75.6 1.6 3.5E-05 45.6 1.9 39 28-68 66-104 (444)
116 KOG3161 Predicted E3 ubiquitin 73.1 1.4 3E-05 48.1 0.7 40 32-73 11-51 (861)
117 KOG2068 MOT2 transcription fac 72.6 2.5 5.4E-05 42.7 2.3 48 33-80 250-298 (327)
118 KOG3039 Uncharacterized conser 72.0 2.3 5E-05 41.5 1.9 33 32-67 43-75 (303)
119 KOG1609 Protein involved in mR 68.9 2.5 5.4E-05 41.1 1.4 49 32-80 78-134 (323)
120 KOG0824 Predicted E3 ubiquitin 68.0 1.6 3.4E-05 43.7 -0.2 48 32-81 105-152 (324)
121 PF14446 Prok-RING_1: Prokaryo 66.1 5.1 0.00011 30.4 2.2 32 32-63 5-37 (54)
122 KOG2807 RNA polymerase II tran 65.0 4.1 9E-05 41.3 2.0 45 32-76 330-374 (378)
123 PF07191 zinc-ribbons_6: zinc- 64.5 1.3 2.9E-05 35.2 -1.2 41 32-80 1-41 (70)
124 KOG1829 Uncharacterized conser 63.8 2.9 6.4E-05 45.3 0.8 25 48-75 532-556 (580)
125 KOG2066 Vacuolar assembly/sort 62.6 3.6 7.9E-05 45.9 1.2 50 26-76 778-831 (846)
126 KOG1812 Predicted E3 ubiquitin 60.3 4.4 9.5E-05 41.9 1.3 42 33-75 307-351 (384)
127 KOG2169 Zn-finger transcriptio 57.8 18 0.00039 39.8 5.6 59 33-95 307-371 (636)
128 KOG0269 WD40 repeat-containing 56.3 7.4 0.00016 43.4 2.2 41 33-74 780-820 (839)
129 COG5627 MMS21 DNA repair prote 55.7 11 0.00024 36.7 3.1 67 32-100 189-259 (275)
130 PLN02189 cellulose synthase 55.6 9.9 0.00021 43.9 3.2 52 28-80 30-87 (1040)
131 PF04216 FdhE: Protein involve 55.1 1.8 3.9E-05 42.6 -2.4 48 30-78 170-220 (290)
132 KOG4185 Predicted E3 ubiquitin 55.1 2.2 4.7E-05 41.8 -1.9 49 30-78 205-265 (296)
133 KOG0802 E3 ubiquitin ligase [P 52.2 6.6 0.00014 42.2 1.1 45 32-83 479-523 (543)
134 KOG3842 Adaptor protein Pellin 51.8 14 0.0003 37.6 3.1 53 30-82 339-416 (429)
135 PLN02436 cellulose synthase A 51.4 13 0.00027 43.2 3.2 53 27-80 31-89 (1094)
136 PF04710 Pellino: Pellino; In 49.7 5.5 0.00012 41.3 0.0 52 31-82 327-403 (416)
137 PF14569 zf-UDP: Zinc-binding 47.2 19 0.00041 29.3 2.7 53 28-80 5-62 (80)
138 PF13901 DUF4206: Domain of un 45.9 13 0.00028 35.0 1.8 40 32-76 152-196 (202)
139 PF07975 C1_4: TFIIH C1-like d 45.6 8.3 0.00018 28.8 0.4 41 35-75 2-49 (51)
140 PLN02638 cellulose synthase A 43.8 20 0.00044 41.7 3.3 48 32-80 17-70 (1079)
141 KOG3005 GIY-YIG type nuclease 42.6 13 0.00028 36.7 1.4 48 33-80 183-243 (276)
142 TIGR00622 ssl1 transcription f 41.8 20 0.00043 31.1 2.2 45 32-76 55-110 (112)
143 PF01363 FYVE: FYVE zinc finge 40.8 12 0.00026 28.5 0.7 38 29-66 6-44 (69)
144 PLN02400 cellulose synthase 40.6 20 0.00044 41.7 2.7 53 27-80 31-89 (1085)
145 PF02318 FYVE_2: FYVE-type zin 40.4 17 0.00036 31.1 1.6 49 28-77 50-102 (118)
146 PLN02195 cellulose synthase A 40.0 28 0.00061 40.2 3.6 49 32-81 6-60 (977)
147 KOG3799 Rab3 effector RIM1 and 39.8 9.3 0.0002 34.3 -0.1 27 32-66 65-92 (169)
148 PF06844 DUF1244: Protein of u 38.7 18 0.00038 28.6 1.3 12 56-67 11-22 (68)
149 KOG2789 Putative Zn-finger pro 38.6 13 0.00028 38.7 0.7 33 33-66 75-107 (482)
150 KOG2231 Predicted E3 ubiquitin 38.4 21 0.00045 39.6 2.2 43 34-79 2-51 (669)
151 PF10497 zf-4CXXC_R1: Zinc-fin 38.2 35 0.00076 29.0 3.2 46 31-77 6-69 (105)
152 smart00249 PHD PHD zinc finger 37.9 16 0.00034 24.6 0.9 31 34-64 1-31 (47)
153 KOG1356 Putative transcription 37.1 10 0.00023 42.7 -0.2 47 32-79 229-281 (889)
154 PF06906 DUF1272: Protein of u 36.6 64 0.0014 24.7 4.0 44 34-81 7-53 (57)
155 TIGR01562 FdhE formate dehydro 36.0 9.2 0.0002 38.4 -0.8 46 32-78 184-233 (305)
156 KOG3113 Uncharacterized conser 35.6 30 0.00066 34.1 2.6 50 32-83 111-161 (293)
157 KOG1815 Predicted E3 ubiquitin 34.6 12 0.00027 39.1 -0.2 38 32-69 226-268 (444)
158 smart00647 IBR In Between Ring 33.8 8.9 0.00019 28.2 -1.0 33 33-65 19-58 (64)
159 smart00064 FYVE Protein presen 33.4 33 0.00072 25.9 2.1 36 31-66 9-45 (68)
160 PRK03564 formate dehydrogenase 32.9 14 0.00029 37.4 -0.2 45 31-77 186-234 (309)
161 PF04710 Pellino: Pellino; In 32.7 15 0.00032 38.3 0.0 47 32-81 277-340 (416)
162 KOG3337 Protein similar to pre 32.1 15 0.00032 34.3 -0.1 28 270-297 135-163 (201)
163 smart00132 LIM Zinc-binding do 30.8 44 0.00096 21.6 2.1 37 34-79 1-37 (39)
164 PLN02915 cellulose synthase A 30.3 36 0.00078 39.6 2.5 48 32-80 15-68 (1044)
165 PF13240 zinc_ribbon_2: zinc-r 29.7 9.7 0.00021 23.7 -1.2 9 69-77 13-21 (23)
166 KOG0956 PHD finger protein AF1 27.9 20 0.00044 39.8 0.1 52 28-79 113-181 (900)
167 PF00628 PHD: PHD-finger; Int 26.3 24 0.00052 25.1 0.2 43 34-76 1-49 (51)
168 PF09397 Ftsk_gamma: Ftsk gamm 25.2 31 0.00068 26.9 0.7 24 309-332 24-48 (65)
169 PF05605 zf-Di19: Drought indu 24.5 40 0.00086 24.7 1.1 36 32-77 2-39 (54)
170 PF00412 LIM: LIM domain; Int 24.4 58 0.0013 23.4 2.0 39 35-82 1-39 (58)
171 cd00065 FYVE FYVE domain; Zinc 24.1 49 0.0011 24.0 1.5 34 33-66 3-37 (57)
172 cd07153 Fur_like Ferric uptake 23.2 23 0.0005 29.4 -0.5 32 301-332 16-49 (116)
173 COG2824 PhnA Uncharacterized Z 22.6 32 0.0007 29.6 0.3 28 33-66 4-31 (112)
174 PF13771 zf-HC5HC2H: PHD-like 22.6 24 0.00053 28.0 -0.4 40 23-64 27-68 (90)
175 COG4847 Uncharacterized protei 22.3 58 0.0013 27.6 1.7 34 32-66 6-39 (103)
176 COG3492 Uncharacterized protei 21.6 45 0.00098 28.0 1.0 14 55-68 41-54 (104)
177 COG3813 Uncharacterized protei 21.5 1E+02 0.0023 24.9 2.9 48 34-83 7-55 (84)
178 KOG4218 Nuclear hormone recept 21.5 75 0.0016 32.8 2.7 15 28-42 11-25 (475)
179 PF10146 zf-C4H2: Zinc finger- 21.4 71 0.0015 30.9 2.4 28 57-84 196-223 (230)
180 PF01485 IBR: IBR domain; Int 20.9 12 0.00026 27.4 -2.3 33 33-65 19-58 (64)
181 KOG3726 Uncharacterized conser 20.8 48 0.001 36.8 1.2 40 33-75 655-695 (717)
182 PLN02248 cellulose synthase-li 20.8 69 0.0015 37.7 2.5 33 51-83 148-180 (1135)
183 smart00843 Ftsk_gamma This dom 20.7 48 0.001 25.8 0.9 24 309-332 23-47 (63)
184 KOG4451 Uncharacterized conser 20.5 69 0.0015 31.2 2.1 29 56-84 250-278 (286)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.30 E-value=7.8e-13 Score=94.26 Aligned_cols=44 Identities=43% Similarity=1.099 Sum_probs=39.5
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCc
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR 76 (382)
++|+||++.|..++.++.++|+|.||..||.+|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999998777888899999999999999999999999997
No 2
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.06 E-value=1.2e-10 Score=111.54 Aligned_cols=56 Identities=27% Similarity=0.743 Sum_probs=44.9
Q ss_pred CCCCCCccccccccccccCCCC-----ceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 26 GIQDSCDDACSICLEEFSESDP-----STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 26 ~iqd~ed~~C~ICLe~f~~~~~-----~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
..+...+.+|+||++.+..... .++++|+|.||..||.+|++.+.+||+||..+..
T Consensus 168 ~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 168 LYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred hhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence 3344567899999998744221 3567899999999999999999999999998753
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6.6e-11 Score=118.21 Aligned_cols=49 Identities=35% Similarity=0.990 Sum_probs=44.5
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcC-CCCCCCccCCCC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL 81 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s-~sCP~CR~~l~~ 81 (382)
++|.||+|+|..++..++|||+|.||..||..||... ..||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4999999999999999999999999999999999876 559999997654
No 4
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-10 Score=110.21 Aligned_cols=55 Identities=33% Similarity=0.734 Sum_probs=45.5
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhc---CCCCCCCccCCCCCCcc
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLKDAT 85 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~---s~sCP~CR~~l~~kd~~ 85 (382)
.+....+|.||||.-++ ++++.|||.|||.||.+|++. ++.||+|+..+..+...
T Consensus 43 ~~~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 45568999999999733 788899999999999999985 35699999988765443
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.01 E-value=2.4e-10 Score=90.46 Aligned_cols=45 Identities=36% Similarity=1.006 Sum_probs=36.3
Q ss_pred ccccccccccccC----------CCCceeecccCcccHhhHHHHHhcCCCCCCCc
Q 016793 32 DDACSICLEEFSE----------SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (382)
Q Consensus 32 d~~C~ICLe~f~~----------~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR 76 (382)
++.|+||++.|.+ .-.+.+.+|+|.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 5569999999932 12345678999999999999999999999997
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=2.2e-10 Score=106.12 Aligned_cols=53 Identities=30% Similarity=0.749 Sum_probs=43.0
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----------------CCCCCCCccCCCCCC
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----------------SSQCPMCWQPISLKD 83 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----------------s~sCP~CR~~l~~kd 83 (382)
+...+.+|+||++.+.+ +++++|+|.||+.||..|+.. ...||+||..+...+
T Consensus 14 ~~~~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 14 DSGGDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred cCCCccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 44457899999999833 677899999999999999852 247999999987654
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.2e-10 Score=111.05 Aligned_cols=57 Identities=30% Similarity=0.774 Sum_probs=48.1
Q ss_pred hcCCCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 24 EGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 24 ~g~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
......+.+..|.|||+.. ..+..++|||.||+.||.+|+.....||+||..+.+.+
T Consensus 231 ~~~~i~~a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCccCCCCCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 3334555678999999996 44789999999999999999999999999999987654
No 8
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.94 E-value=1.1e-09 Score=82.79 Aligned_cols=57 Identities=18% Similarity=0.377 Sum_probs=47.3
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLE 91 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle 91 (382)
+..|+||.+.+.+ +++++|||+||..||.+|++.+..||+|+..+...+...+..+.
T Consensus 1 ~~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~ 57 (63)
T smart00504 1 EFLCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALK 57 (63)
T ss_pred CcCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHH
Confidence 4689999999933 57789999999999999999888999999999777665554443
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.90 E-value=6.6e-10 Score=77.37 Aligned_cols=39 Identities=41% Similarity=1.144 Sum_probs=33.2
Q ss_pred cccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCC
Q 016793 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (382)
Q Consensus 35 C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~C 75 (382)
|+||++.+ .++.++++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~--~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc--cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998 4445789999999999999999998899998
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.90 E-value=9.2e-10 Score=80.52 Aligned_cols=47 Identities=34% Similarity=0.822 Sum_probs=39.9
Q ss_pred CccccccccccccCCCCceeecccCc-ccHhhHHHHHhcCCCCCCCccCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~-FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
++..|.||++.+.+ +.+++|+|. ||..|+.+|++....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 36799999999733 788899999 999999999999999999999875
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=9.8e-10 Score=100.16 Aligned_cols=55 Identities=31% Similarity=0.651 Sum_probs=45.5
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
.+.-..|+|||+.+... .+.-++|||+||..||...++....||+|++.|..+++
T Consensus 128 ~~~~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred cccccCCCceecchhhc-cccccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 33457899999999543 23448999999999999999999999999998887653
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.82 E-value=2.2e-09 Score=76.38 Aligned_cols=38 Identities=32% Similarity=0.854 Sum_probs=29.1
Q ss_pred cccccccccCCCCceeecccCcccHhhHHHHHhcC----CCCCCC
Q 016793 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMC 75 (382)
Q Consensus 35 C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s----~sCP~C 75 (382)
|+||++.|.+ ++.++|||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999943 7778999999999999999753 469988
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.1e-09 Score=107.32 Aligned_cols=54 Identities=30% Similarity=0.864 Sum_probs=44.8
Q ss_pred CCCcccccccccccc-CC---------CCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 29 DSCDDACSICLEEFS-ES---------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 29 d~ed~~C~ICLe~f~-~~---------~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
...|..|.||+|++. .+ ..++.++|||.||.+|++.|++++++||+||.++..+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd 347 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFD 347 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccc
Confidence 456899999999953 21 2357799999999999999999999999999996543
No 14
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.4e-09 Score=104.52 Aligned_cols=49 Identities=37% Similarity=0.895 Sum_probs=44.7
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHh-cCCCCCCCccCCCC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISL 81 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq-~s~sCP~CR~~l~~ 81 (382)
.+|.||++.|...+..+++||.|.||..|+.+|+. .+..||+||..+.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 69999999998777889999999999999999998 67899999998864
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.80 E-value=4e-09 Score=72.92 Aligned_cols=44 Identities=41% Similarity=1.090 Sum_probs=37.5
Q ss_pred ccccccccccCCCCceeecccCcccHhhHHHHHhc-CCCCCCCccCC
Q 016793 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPI 79 (382)
Q Consensus 34 ~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l 79 (382)
+|+||++.+ .+...+++|+|.||..|+..|++. ...||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 455666779999999999999987 77899998754
No 16
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=4.2e-09 Score=107.40 Aligned_cols=59 Identities=25% Similarity=0.542 Sum_probs=48.1
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~v 93 (382)
+..|+||++.|.. +++++|+|.||..||..|+.....||+|+..+....+..+..+..+
T Consensus 26 ~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~i 84 (397)
T TIGR00599 26 SLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEI 84 (397)
T ss_pred ccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHH
Confidence 6899999999933 5678999999999999999988899999999876655555444433
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.77 E-value=3.8e-09 Score=99.53 Aligned_cols=60 Identities=25% Similarity=0.547 Sum_probs=45.8
Q ss_pred hhcCCCCCCccccccccccccCC------CCceeecccCcccHhhHHHHHhcC------CCCCCCccCCCCC
Q 016793 23 VEGGIQDSCDDACSICLEEFSES------DPSTVTSCKHEFHLQCVLEWCQRS------SQCPMCWQPISLK 82 (382)
Q Consensus 23 v~g~iqd~ed~~C~ICLe~f~~~------~~~~vl~CgH~FC~~CI~~Wlq~s------~sCP~CR~~l~~k 82 (382)
-+...+.+.|.+|+||+|.+... ....+.+|+|.||..||..|.+.. ..||+||..+...
T Consensus 161 ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 161 YEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred HHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 34455667789999999986332 124677999999999999999753 4599999987643
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.73 E-value=8e-09 Score=84.16 Aligned_cols=51 Identities=43% Similarity=1.044 Sum_probs=40.5
Q ss_pred cccccccccccc----------CCCCceeecccCcccHhhHHHHHhc---CCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~----------~~~~~~vl~CgH~FC~~CI~~Wlq~---s~sCP~CR~~l~~k 82 (382)
|+.|.||...|. ++-++..-.|+|.||.+||.+|+.. +..||+||+++..+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 778999998884 1123455689999999999999975 46899999988654
No 19
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.68 E-value=8.2e-09 Score=102.09 Aligned_cols=61 Identities=26% Similarity=0.637 Sum_probs=53.0
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ 95 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~ve~ 95 (382)
-+.|.||.++|.. +.+++|+|.||.-||..+|..+..||.|+.++...++..+.+++.+..
T Consensus 23 lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~ 83 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVK 83 (442)
T ss_pred HHHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHH
Confidence 5799999999943 788899999999999999999999999999999888877766665543
No 20
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.6e-09 Score=105.10 Aligned_cols=88 Identities=25% Similarity=0.538 Sum_probs=61.1
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc-CCCCCCCccCCCCCCcchHHHHHHHHHHhhhcCCCCCCCccc
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIF 110 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~kd~~~~~lle~ve~er~~r~~psr~a~i~ 110 (382)
++.|+|||+.+ +..++...|.|.||..||..-+.. .+.||.||+.+..+ +.++.+|...+.|.
T Consensus 43 ~v~c~icl~ll--k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk--------------rsLr~Dp~fdaLis 106 (381)
T KOG0311|consen 43 QVICPICLSLL--KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK--------------RSLRIDPNFDALIS 106 (381)
T ss_pred hhccHHHHHHH--HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc--------------ccCCCCccHHHHHH
Confidence 68999999999 556788899999999999888865 67899999988764 34444444444433
Q ss_pred CC-CCCCCCccccCCCCCCchhHHHH
Q 016793 111 HH-PTFGDFELQHLPVGASDTDLEEH 135 (382)
Q Consensus 111 ~~-p~~~dfelq~l~v~~ddaeleEr 135 (382)
.. +.++.|+..+..+...|..+..+
T Consensus 107 ~i~~sie~~e~~q~~~~ekd~~~~~q 132 (381)
T KOG0311|consen 107 KIYPSIEEYEAPQPRFMEKDDSAQIQ 132 (381)
T ss_pred HHhccHHHHhccchhHHhhHHHHhHH
Confidence 32 33455555555555555555555
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.66 E-value=1.3e-08 Score=71.10 Aligned_cols=39 Identities=44% Similarity=1.162 Sum_probs=33.3
Q ss_pred cccccccccCCCCceeecccCcccHhhHHHHHh--cCCCCCCC
Q 016793 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMC 75 (382)
Q Consensus 35 C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq--~s~sCP~C 75 (382)
|+||++.+ .++..+++|+|.||..||..|++ ....||+|
T Consensus 1 C~iC~~~~--~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPF--EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBC--SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccc--cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998 33345899999999999999998 45679998
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.64 E-value=2.1e-08 Score=71.70 Aligned_cols=44 Identities=36% Similarity=0.870 Sum_probs=38.6
Q ss_pred ccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCcc
Q 016793 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (382)
Q Consensus 34 ~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~ 77 (382)
.|+||++.|.....+.+++|+|.||..||..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955567899999999999999999966778999974
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-08 Score=104.18 Aligned_cols=53 Identities=38% Similarity=0.741 Sum_probs=44.3
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcC-----CCCCCCccCCCCCCcchH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-----SQCPMCWQPISLKDATSQ 87 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s-----~sCP~CR~~l~~kd~~~~ 87 (382)
+..|||||+.. ..+..+.|||+||+.||..+|... ..||+||..|..+++.+.
T Consensus 186 ~~~CPICL~~~---~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPP---SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCC---CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 78999999997 336667899999999999998653 469999999998876654
No 24
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.55 E-value=7.2e-08 Score=76.14 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=46.5
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhc-CCCCCCCccCCCCCCcchHHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAVE 94 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~kd~~~~~lle~ve 94 (382)
+++.|+||.+.|.+ +++++|||.|+..||..|+.. ...||+|+..+...+...+..+....
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I 64 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAI 64 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHH
T ss_pred cccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHH
Confidence 36899999999944 778899999999999999998 78999999999988888776655443
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=1.1e-07 Score=63.32 Aligned_cols=38 Identities=39% Similarity=1.095 Sum_probs=33.0
Q ss_pred cccccccccCCCCceeecccCcccHhhHHHHHh-cCCCCCCC
Q 016793 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC 75 (382)
Q Consensus 35 C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq-~s~sCP~C 75 (382)
|+||++.. ..+.+++|+|.||..|+..|++ ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999995 4477889999999999999998 56679987
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.7e-08 Score=93.48 Aligned_cols=51 Identities=35% Similarity=0.820 Sum_probs=43.9
Q ss_pred CCccccccccccccCCCCceeecccCcccHhhHHH-HHhcCCC-CCCCccCCCCCC
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLE-WCQRSSQ-CPMCWQPISLKD 83 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~-Wlq~s~s-CP~CR~~l~~kd 83 (382)
..|..|.||++.. ..+..++|||+||+.||.. |-.++.. ||+||+...+++
T Consensus 213 ~~d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEP---EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeeccc---CCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4478999999997 3478889999999999999 9888776 999999887764
No 27
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.6e-08 Score=102.51 Aligned_cols=51 Identities=33% Similarity=0.797 Sum_probs=43.4
Q ss_pred CCccccccccccccCCCC--ceeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 30 SCDDACSICLEEFSESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~--~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
..+..|+||+|.+..... +..++|+|.||..|+..|+++..+||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 347899999999954322 678899999999999999999999999999543
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.33 E-value=2.9e-07 Score=66.05 Aligned_cols=38 Identities=39% Similarity=0.927 Sum_probs=22.9
Q ss_pred cccccccccC-CCCceeecccCcccHhhHHHHHhcC----CCCC
Q 016793 35 CSICLEEFSE-SDPSTVTSCKHEFHLQCVLEWCQRS----SQCP 73 (382)
Q Consensus 35 C~ICLe~f~~-~~~~~vl~CgH~FC~~CI~~Wlq~s----~sCP 73 (382)
|+||.+ |.+ ..++++|+|||.||..||.+|++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 643 4567889999999999999999853 3576
No 29
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.5e-07 Score=85.63 Aligned_cols=44 Identities=32% Similarity=0.794 Sum_probs=38.5
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCcc
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~ 77 (382)
++..|+||++.| .++ ++++|+|.||..||..|+.....||.||.
T Consensus 12 ~~~~C~iC~~~~--~~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYF--REP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHh--hcC-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 478999999999 334 88899999999999999985567999995
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.24 E-value=4.9e-07 Score=88.19 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=42.4
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
-+.|-||-+.|.. +..++|||.||.-||..+|..+..||+||.....
T Consensus 25 ~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 5799999999944 6888999999999999999999999999998755
No 31
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.22 E-value=6.8e-07 Score=71.85 Aligned_cols=36 Identities=31% Similarity=0.700 Sum_probs=31.5
Q ss_pred ceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 48 STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 48 ~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
+..-.|.|.||.+||.+||..+..||+||+++...+
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 345689999999999999999999999999886644
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.22 E-value=5.2e-07 Score=69.87 Aligned_cols=58 Identities=28% Similarity=0.693 Sum_probs=29.9
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~v 93 (382)
-..|++|.+.+ +.++.+..|.|.||..||...+. ..||+|..+....|...+..+..+
T Consensus 7 lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 7 LLRCSICFDIL--KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp TTS-SSS-S----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHHH
T ss_pred hcCCcHHHHHh--cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhcc
Confidence 46899999999 56667889999999999987554 459999999998888777766543
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=1.1e-06 Score=87.00 Aligned_cols=54 Identities=24% Similarity=0.458 Sum_probs=39.6
Q ss_pred ccccccccccccCCCC--ceeecccCcccHhhHHHHHh-cCCCCCCCccCCCCCCcc
Q 016793 32 DDACSICLEEFSESDP--STVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDAT 85 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~--~~vl~CgH~FC~~CI~~Wlq-~s~sCP~CR~~l~~kd~~ 85 (382)
+..||||...-..... ..+.+|||.||..||..++. ....||.|+..+...++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 5689999995322222 23337999999999999664 456899999988776543
No 34
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.3e-07 Score=70.81 Aligned_cols=51 Identities=39% Similarity=0.931 Sum_probs=38.5
Q ss_pred cccccccccccc----------CCCCceeecccCcccHhhHHHHHhc---CCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~----------~~~~~~vl~CgH~FC~~CI~~Wlq~---s~sCP~CR~~l~~k 82 (382)
+.+|-||.-.|. ++-+.++--|.|.||..||.+|+.. +..||+||+.+..+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 458888888874 2123344589999999999999964 45799999987643
No 35
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=5.6e-06 Score=85.66 Aligned_cols=50 Identities=32% Similarity=0.828 Sum_probs=39.4
Q ss_pred ccccccccccccCC--------------CCceeecccCcccHhhHHHHHhc-CCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSES--------------DPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~--------------~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~ 81 (382)
...|+||+..+... ..-.++||.|.||..|++.|... +-.||+||.++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 46899999987411 11245799999999999999994 5589999998863
No 36
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=7.6e-06 Score=82.40 Aligned_cols=60 Identities=33% Similarity=0.785 Sum_probs=46.2
Q ss_pred hhcCCCCCCccccccccccccCCC-----CceeecccCcccHhhHHHHHh--c-----CCCCCCCccCCCCC
Q 016793 23 VEGGIQDSCDDACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQ--R-----SSQCPMCWQPISLK 82 (382)
Q Consensus 23 v~g~iqd~ed~~C~ICLe~f~~~~-----~~~vl~CgH~FC~~CI~~Wlq--~-----s~sCP~CR~~l~~k 82 (382)
-.+.++...+.+|.||++.+.... -.++++|.|.||..||..|-+ + .+.||.||......
T Consensus 152 ~~~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 152 RSFALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred hccCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 344556678999999999985543 224478999999999999984 3 46799999877654
No 37
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=6.4e-06 Score=79.79 Aligned_cols=55 Identities=31% Similarity=0.784 Sum_probs=43.1
Q ss_pred CCCCccccccccccccCCC-------CceeecccCcccHhhHHHHHh--cCCCCCCCccCCCCC
Q 016793 28 QDSCDDACSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLK 82 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~-------~~~vl~CgH~FC~~CI~~Wlq--~s~sCP~CR~~l~~k 82 (382)
+..+|..|.||-..+.... ....+.|+|+||..||.-|+. ++++||.|++.+..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 3445789999988774332 356789999999999999985 467899999887543
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.75 E-value=5e-06 Score=65.48 Aligned_cols=50 Identities=38% Similarity=0.842 Sum_probs=24.1
Q ss_pred cccccccccccc-CCCCce-e---ecccCcccHhhHHHHHhc---C--------CCCCCCccCCCC
Q 016793 32 DDACSICLEEFS-ESDPST-V---TSCKHEFHLQCVLEWCQR---S--------SQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~-~~~~~~-v---l~CgH~FC~~CI~~Wlq~---s--------~sCP~CR~~l~~ 81 (382)
+.+|.||+..+. .+..+. + ..|++.||..||.+|+.. . ..||.|+.+|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 579999999875 222222 2 378999999999999963 1 149999988754
No 39
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.2e-05 Score=67.63 Aligned_cols=51 Identities=25% Similarity=0.676 Sum_probs=39.4
Q ss_pred Ccccccccccccc------------CCCC--ceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 31 CDDACSICLEEFS------------ESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 31 ed~~C~ICLe~f~------------~~~~--~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
.-+.|.||.--++ ..+. +..-.|.|.||..||.+|++....||+|.+.+..
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 4578999987654 1111 2346899999999999999999999999877643
No 40
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.71 E-value=4e-05 Score=77.79 Aligned_cols=49 Identities=24% Similarity=0.671 Sum_probs=41.4
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhc--CCCCCCCccCCCCCCc
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDA 84 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~--s~sCP~CR~~l~~kd~ 84 (382)
.-|-||-|.= +.+.+-+|||..|..|+..|... ...||.||..|...++
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 3699999984 44788899999999999999854 5789999999987654
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.2e-05 Score=60.44 Aligned_cols=47 Identities=32% Similarity=0.716 Sum_probs=38.3
Q ss_pred CccccccccccccCCCCceeecccC-cccHhhHHHHHh-cCCCCCCCccCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ-RSSQCPMCWQPIS 80 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH-~FC~~CI~~Wlq-~s~sCP~CR~~l~ 80 (382)
.+++|.||+|...+ .++.-||| -.|..|-.+.++ .+..||+||.++.
T Consensus 6 ~~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 35899999998744 45668999 689999888776 6889999999874
No 42
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.65 E-value=4.1e-05 Score=56.31 Aligned_cols=42 Identities=29% Similarity=0.786 Sum_probs=32.5
Q ss_pred ccccccccccCCCCceeeccc-----CcccHhhHHHHHhcC--CCCCCCc
Q 016793 34 ACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCW 76 (382)
Q Consensus 34 ~C~ICLe~f~~~~~~~vl~Cg-----H~FC~~CI~~Wlq~s--~sCP~CR 76 (382)
.|-||++.. +.+.+.+.||. |.||..||.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999933 33445678985 899999999999654 5899994
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.4e-05 Score=86.34 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=42.7
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc-CCCCCCCccCCCCCCc
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~kd~ 84 (382)
-+.|+.|-.-+++ .+++.|+|.||..|+...+.. ...||.|...|..-|.
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 4799999988855 677899999999999999974 6789999999887664
No 44
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.55 E-value=2.3e-05 Score=77.87 Aligned_cols=49 Identities=29% Similarity=0.645 Sum_probs=42.7
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
-.+|.+|-.+| .+.-+++.|-|.||..||.+++.....||.|...+...
T Consensus 15 ~itC~LC~GYl--iDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYL--IDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhcccee--ecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 46999999999 45567889999999999999999999999998877543
No 45
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=4.1e-05 Score=75.29 Aligned_cols=48 Identities=23% Similarity=0.528 Sum_probs=40.7
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCC-CCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~-sCP~CR~~l~~k 82 (382)
+.+|+||+... ..++.+.|+|.||.-||.--++..+ .|++||.+|...
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 57999999986 4468889999999999998887654 599999999764
No 46
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.54 E-value=2.3e-05 Score=86.11 Aligned_cols=50 Identities=28% Similarity=0.868 Sum_probs=39.3
Q ss_pred Ccccccccccccc--CCCC--ceeecccCcccHhhHHHHHhc--CCCCCCCccCCC
Q 016793 31 CDDACSICLEEFS--ESDP--STVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPIS 80 (382)
Q Consensus 31 ed~~C~ICLe~f~--~~~~--~~vl~CgH~FC~~CI~~Wlq~--s~sCP~CR~~l~ 80 (382)
.-.+|+||+..+. +..- -++..|+|.||..|+.+|++. +..||+||..+.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3679999999874 1111 256789999999999999986 467999998765
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=5.4e-05 Score=77.72 Aligned_cols=59 Identities=25% Similarity=0.634 Sum_probs=49.2
Q ss_pred HhhhhcCCCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 20 AAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 20 ~a~v~g~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
.+...++.+...+..|.||+..+ .+++.++|||.||..||.+-+.....||.||..+..
T Consensus 72 ~~~~s~~~~~~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 72 KALLSGPEEIRSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred hhhhccCccccchhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 33455555667799999999998 447778999999999999988888899999999875
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=6.8e-05 Score=75.22 Aligned_cols=48 Identities=31% Similarity=0.756 Sum_probs=40.8
Q ss_pred CCccccccccccccCCCCceeecccC-cccHhhHHHHHhcCCCCCCCccCCC
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH-~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
+.-.+|.||+....+ ..++||.| -.|..|.+...-+++.||+||+++.
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 335799999999744 68899999 6899999888777899999999875
No 49
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.45 E-value=2.5e-05 Score=84.45 Aligned_cols=54 Identities=20% Similarity=0.476 Sum_probs=44.9
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
+......|+||+..+.++......+|+|.||..||..|.+.-.+||+||..|..
T Consensus 119 ~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 119 QTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 445567899999988665555557999999999999999999999999988754
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.40 E-value=4.3e-05 Score=75.11 Aligned_cols=51 Identities=33% Similarity=0.816 Sum_probs=42.8
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc-----------------------CCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----------------------SSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-----------------------s~sCP~CR~~l~~k 82 (382)
...|.|||.-|-+++..+++.|.|.||+.|+.++|.. ...||+||..|...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 5789999999988777899999999999999987632 13599999988754
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.37 E-value=6.6e-05 Score=77.18 Aligned_cols=48 Identities=33% Similarity=0.807 Sum_probs=37.9
Q ss_pred CccccccccccccCCCC-ceeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 31 CDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~-~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
+--+||||||-+..... +..+.|+|.||..|+..|.. .+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 35799999999844332 24468999999999999974 67999998655
No 52
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0002 Score=72.99 Aligned_cols=52 Identities=27% Similarity=0.753 Sum_probs=39.4
Q ss_pred ccccccccccccCC--CCceeecccCcccHhhHHHHHhc--CCCCCCCccCCCCCC
Q 016793 32 DDACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKD 83 (382)
Q Consensus 32 d~~C~ICLe~f~~~--~~~~vl~CgH~FC~~CI~~Wlq~--s~sCP~CR~~l~~kd 83 (382)
-.+|+||++.+... ..+..+.|+|.|..+||+.|+.+ ...||.|...-...+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~ 59 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQ 59 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHH
Confidence 46999999987532 23566899999999999999953 357999976544433
No 53
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00018 Score=72.97 Aligned_cols=47 Identities=26% Similarity=0.803 Sum_probs=33.9
Q ss_pred cccccccccccCCCCce-eecccCcccHhhHHHHHhcC---CCCCCCccCC
Q 016793 33 DACSICLEEFSESDPST-VTSCKHEFHLQCVLEWCQRS---SQCPMCWQPI 79 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~-vl~CgH~FC~~CI~~Wlq~s---~sCP~CR~~l 79 (382)
-.|.||.+.+-...... +-.|||+||..|+..|+..- ..||+|+..+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 47999965553222222 33599999999999999873 4699999444
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00031 Score=69.09 Aligned_cols=59 Identities=31% Similarity=0.501 Sum_probs=48.2
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHHHH
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVE 94 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~ve 94 (382)
+.|-||...|.. ++++.|+|.||..|...-++....|++|-+.+........+|+..+.
T Consensus 242 f~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 242 FKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLK 300 (313)
T ss_pred cccccccccccc---chhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHH
Confidence 469999999943 78889999999999999999999999998887766555555555443
No 55
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00041 Score=69.69 Aligned_cols=56 Identities=20% Similarity=0.452 Sum_probs=46.7
Q ss_pred hhcCCCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 23 v~g~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
.....-+.+|..|+||+-... ..+..||+|.-|..||.+.+-..+.|..|+..+..
T Consensus 413 ~~~~lp~sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 413 FNKDLPDSEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred hcCCCCCcccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 344456788999999998752 25778999999999999999999999999887754
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.00 E-value=0.00029 Score=72.28 Aligned_cols=52 Identities=29% Similarity=0.729 Sum_probs=43.1
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
++..|+||...+.+ +...+.|+|.||..|+..|+..+..||.|+..+.....
T Consensus 20 ~~l~C~~C~~vl~~--p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 20 ENLLCPICMSVLRD--PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred ccccCccccccccC--CCCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 37899999999943 33336999999999999999999999999888765443
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.99 E-value=0.00031 Score=53.34 Aligned_cols=41 Identities=37% Similarity=0.829 Sum_probs=29.0
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc--CCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPM 74 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~--s~sCP~ 74 (382)
...|||.+..| .++++-..|+|.|....|.+|++. ...||+
T Consensus 11 ~~~CPiT~~~~--~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPF--EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChh--hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 58999999999 556666799999999999999944 456998
No 58
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00051 Score=66.96 Aligned_cols=50 Identities=24% Similarity=0.589 Sum_probs=40.2
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhc--CCCCCCCccCCC
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPIS 80 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~--s~sCP~CR~~l~ 80 (382)
...+.+|++|-+.. ..|.++.+|+|+||..||..-+.. ...||.|-....
T Consensus 236 ~t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34588999999987 445667789999999999887754 578999977654
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.94 E-value=0.00041 Score=72.76 Aligned_cols=69 Identities=23% Similarity=0.518 Sum_probs=50.4
Q ss_pred CCCchhhhhhHhhhhcCCCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhc-----CCCCCCCccCCCCCC
Q 016793 10 KKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQPISLKD 83 (382)
Q Consensus 10 ~~~~~~~~s~~a~v~g~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-----s~sCP~CR~~l~~kd 83 (382)
+++--++.+..+.+.+.. ..+..|.+|-+.-.+ .+...|.|.||..||.+++.. +.+||.|-..+..+.
T Consensus 516 DHP~LVl~S~~~n~~~en--k~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 516 DHPDLVLYSANANLPDEN--KGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCcceeeehhhcCCCccc--cCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 344445555555555444 447899999999633 677899999999999999864 457999988776553
No 60
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.85 E-value=0.00037 Score=65.18 Aligned_cols=47 Identities=26% Similarity=0.611 Sum_probs=40.6
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
-..|-||-..|.. ++++.|||.||..|...-++....|-+|-+....
T Consensus 196 PF~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 4689999999943 7888999999999999999999999999776543
No 61
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0027 Score=60.57 Aligned_cols=53 Identities=28% Similarity=0.589 Sum_probs=42.7
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhc--------CCCCCCCccCCCCCCc
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQPISLKDA 84 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~--------s~sCP~CR~~l~~kd~ 84 (382)
.+-.|..|-..+..++..+ +.|.|.||++|+.+|-.. ..+||.|..+|.+...
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 3678999999987766644 589999999999999854 3579999998876543
No 62
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.69 E-value=0.0013 Score=75.38 Aligned_cols=74 Identities=36% Similarity=0.665 Sum_probs=52.1
Q ss_pred CCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcC----------CCCCCCccCCCC---CCcc--hHHHHH
Q 016793 27 IQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----------SQCPMCWQPISL---KDAT--SQELLE 91 (382)
Q Consensus 27 iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s----------~sCP~CR~~l~~---kd~~--~~~lle 91 (382)
.||. |+.|-||+.+-....+.+.+.|+|.||++|....|++. -+||+|+.+|.. +|+. ..++++
T Consensus 3482 kQD~-DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDLldPiKel~e 3560 (3738)
T KOG1428|consen 3482 KQDA-DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLDPIKELYE 3560 (3738)
T ss_pred hccc-CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHHHHHHHHHHH
Confidence 3443 78999999876555667889999999999998877653 259999998865 3321 335566
Q ss_pred HHHHHhhhcC
Q 016793 92 AVEQERSIRA 101 (382)
Q Consensus 92 ~ve~er~~r~ 101 (382)
.+......|.
T Consensus 3561 dV~~KA~MRL 3570 (3738)
T KOG1428|consen 3561 DVRRKALMRL 3570 (3738)
T ss_pred HHHHHHhhhh
Confidence 6555444443
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0047 Score=63.34 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=37.8
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc--------CCCCCCCccC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQP 78 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~--------s~sCP~CR~~ 78 (382)
-..|.||++...-....+.++|+|+||..|+..++.. .-.||-|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4689999999866677888999999999999999853 1358877544
No 64
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.11 E-value=0.0044 Score=61.33 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=39.2
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHh-cCCCCCCC-ccCCCCCCc
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC-WQPISLKDA 84 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq-~s~sCP~C-R~~l~~kd~ 84 (382)
+.|+.|-..+ .+++....|+|.||..||...|. ..+.||.| |+.+..+.+
T Consensus 275 LkCplc~~Ll--rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l 326 (427)
T COG5222 275 LKCPLCHCLL--RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGL 326 (427)
T ss_pred ccCcchhhhh--hCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhcc
Confidence 8999999998 55566668999999999998775 56789999 445554433
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.0057 Score=59.07 Aligned_cols=54 Identities=15% Similarity=0.338 Sum_probs=45.7
Q ss_pred CccccccccccccCCCCc-eeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 31 CDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
.-..|+||.+.+.+..+. ++-+|||+||..|.+.++..-..||+|-.++..+|.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 356899999999765554 456999999999999999999999999998887663
No 66
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.78 E-value=0.0076 Score=44.38 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=23.2
Q ss_pred cccccccccCCCCc-eeecccCcccHhhHHHHHh-cCCCCCCCccCC
Q 016793 35 CSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPI 79 (382)
Q Consensus 35 C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~Wlq-~s~sCP~CR~~l 79 (382)
|++|.+.+...+.- .-=+|++.+|..|....+. ....||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 79999998433322 2237889999999988886 478899999875
No 67
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.74 E-value=0.0036 Score=63.84 Aligned_cols=48 Identities=27% Similarity=0.666 Sum_probs=38.8
Q ss_pred CCccccccccccccCCCC-ceeecccCcccHhhHHHHHhcC--CCCCCCcc
Q 016793 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRS--SQCPMCWQ 77 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~-~~vl~CgH~FC~~CI~~Wlq~s--~sCP~CR~ 77 (382)
+-++-|..|-+.+..++. ...++|.|+||..|+.+++.++ .+||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 346899999999854433 4568999999999999999765 47999984
No 68
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.002 Score=63.48 Aligned_cols=42 Identities=26% Similarity=0.656 Sum_probs=33.7
Q ss_pred ccccccccccccCCCCceeecccC-cccHhhHHHHHhcCCCCCCCccCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH-~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
+.-|.||++...+ ...|+||| +-|.+|-.. -+.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 6789999999743 68889999 789999644 348999998653
No 69
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0074 Score=60.96 Aligned_cols=48 Identities=33% Similarity=0.673 Sum_probs=35.6
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
+....+-|.||++...+ ...++|||.-| |.... ++...||+||+.|..
T Consensus 301 ~~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred ccCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 44457899999999843 67789999877 76543 334559999988753
No 70
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.33 E-value=0.0058 Score=58.69 Aligned_cols=46 Identities=30% Similarity=0.686 Sum_probs=34.5
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
..|.-|..--. .++-.++.|.|+||..|...-. ...||+|++++..
T Consensus 4 VhCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRI 49 (233)
T ss_pred EEeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeee
Confidence 36887776654 5677899999999999964322 2389999998754
No 71
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.017 Score=56.58 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=40.3
Q ss_pred cccccccccccCCC---CceeecccCcccHhhHHHHHhcC-CCCCCCccCCCCC
Q 016793 33 DACSICLEEFSESD---PSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLK 82 (382)
Q Consensus 33 ~~C~ICLe~f~~~~---~~~vl~CgH~FC~~CI~~Wlq~s-~sCP~CR~~l~~k 82 (382)
..|-||-++|...+ .++++.|||.||..|+...+... -.||.||......
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~ 57 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIP 57 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCC
Confidence 58999999997542 36889999999999998877654 4699999996443
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.015 Score=58.28 Aligned_cols=55 Identities=20% Similarity=0.538 Sum_probs=41.8
Q ss_pred hcCCCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 24 EGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 24 ~g~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
++.........|+||+... .++.++.--|.+||..||-.++...+.||+=-.++.
T Consensus 292 e~e~l~~~~~~CpvClk~r--~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 292 ESELLPPDREVCPVCLKKR--QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred ccccCCCccccChhHHhcc--CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 3444444567999999987 344455566999999999999999999998655544
No 73
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.017 Score=53.49 Aligned_cols=54 Identities=31% Similarity=0.711 Sum_probs=38.1
Q ss_pred CCCccccccccccccCCCCc----eeecccCcccHhhHHHHHhcC-----------CCCCCCccCCCCC
Q 016793 29 DSCDDACSICLEEFSESDPS----TVTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISLK 82 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~----~vl~CgH~FC~~CI~~Wlq~s-----------~sCP~CR~~l~~k 82 (382)
+.+-..|.||+..-.++..+ --..|+..||.-|+..||..- ..||+|..++..+
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 33456788887764433222 225899999999999999641 2599999888765
No 74
>PHA03096 p28-like protein; Provisional
Probab=94.92 E-value=0.014 Score=57.77 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=33.4
Q ss_pred cccccccccccCC-----CCceeecccCcccHhhHHHHHhcC---CCCCCCcc
Q 016793 33 DACSICLEEFSES-----DPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ 77 (382)
Q Consensus 33 ~~C~ICLe~f~~~-----~~~~vl~CgH~FC~~CI~~Wlq~s---~sCP~CR~ 77 (382)
..|.||++..... ....+..|.|.||..||..|.... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6899999987543 123567999999999999998642 34665544
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.88 E-value=0.016 Score=58.24 Aligned_cols=53 Identities=21% Similarity=0.504 Sum_probs=38.3
Q ss_pred CccccccccccccCCCCc-eeecccCcccHhhHHHHHhc-CCCCCCCccCCCCCC
Q 016793 31 CDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~kd 83 (382)
+|+.|+.|++.+.+.+.- .--+||...|.-|.....+. +..||.||..+...+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 356699999998655433 33589998899886665543 568999998776544
No 76
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.78 E-value=0.028 Score=54.61 Aligned_cols=53 Identities=23% Similarity=0.479 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCC-ceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~-~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
.....|||+...|..... +.+-+|||+|+..||.+.- ....||+|-.++...|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 446799999999944333 4456999999999999984 4567999999887554
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.64 E-value=0.024 Score=57.21 Aligned_cols=51 Identities=22% Similarity=0.466 Sum_probs=41.3
Q ss_pred CCCCCCccccccccccccCCCCceeecccCcccHhhHHHHH--hcCCCCCCCccCC
Q 016793 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPI 79 (382)
Q Consensus 26 ~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wl--q~s~sCP~CR~~l 79 (382)
.-+|+++..|.||.+.+. ...++||+|..|--|..+.- ...+.||+||..+
T Consensus 55 ddtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 55 DDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 346777889999999973 36789999999999987653 4578899999765
No 78
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.59 E-value=0.017 Score=51.14 Aligned_cols=45 Identities=18% Similarity=0.449 Sum_probs=32.4
Q ss_pred ccccccccccccCCCCceeeccc------CcccHhhHHHHHhcCCCCCCCc
Q 016793 32 DDACSICLEEFSESDPSTVTSCK------HEFHLQCVLEWCQRSSQCPMCW 76 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~Cg------H~FC~~CI~~Wlq~s~sCP~CR 76 (382)
..+|.||++.+...+-++...|+ |.||..|+.+|-.....=|.=|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 57999999999663345555665 8999999999965444444433
No 79
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.97 E-value=0.032 Score=54.96 Aligned_cols=53 Identities=28% Similarity=0.479 Sum_probs=42.1
Q ss_pred CCCCccccccccccccCCC-CceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
+...+..||||.+.+.... .+.+++|+|..|..|+.+.......||+|.+ +..
T Consensus 154 e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 154 ERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred hhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 3444566999999875544 3677999999999999999988899999977 443
No 80
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.81 E-value=0.038 Score=40.21 Aligned_cols=40 Identities=30% Similarity=0.917 Sum_probs=26.7
Q ss_pred cccccccccCCCCceeeccc-----CcccHhhHHHHHhc--CCCCCCC
Q 016793 35 CSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQR--SSQCPMC 75 (382)
Q Consensus 35 C~ICLe~f~~~~~~~vl~Cg-----H~FC~~CI~~Wlq~--s~sCP~C 75 (382)
|-||++...+.. +.+.||. ...|..||.+|+.. ...|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999875433 4566775 37899999999974 4679887
No 81
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.54 E-value=0.035 Score=61.41 Aligned_cols=47 Identities=36% Similarity=0.893 Sum_probs=36.1
Q ss_pred ccccccccccccCCCCc-eeecccCcccHhhHHHHHhcC-------CCCCCCccC
Q 016793 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS-------SQCPMCWQP 78 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~Wlq~s-------~sCP~CR~~ 78 (382)
..+|.||++.+....++ ....|.|+||..||.+|.... -.||.|...
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 57999999999654433 235799999999999998642 259999743
No 82
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.29 E-value=0.032 Score=45.85 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=26.8
Q ss_pred CCccccccccccccCCCCceeecccCcccHhhHH
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVL 63 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~ 63 (382)
..+..|+||-..+.. ....+.||+|.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 446789999999955 445678999999999974
No 83
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.10 E-value=0.036 Score=60.88 Aligned_cols=46 Identities=33% Similarity=0.796 Sum_probs=38.0
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcC--CCCCCCccCCCCC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s--~sCP~CR~~l~~k 82 (382)
..|.||++ . +.+.++.|+|.||..|+...+... ..||.||..+..+
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 69999999 3 457888999999999999988653 3699999877654
No 84
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.07 E-value=0.035 Score=40.83 Aligned_cols=44 Identities=30% Similarity=0.705 Sum_probs=25.5
Q ss_pred ccccccccccCCCCceeeccc-CcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 34 ACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 34 ~C~ICLe~f~~~~~~~vl~Cg-H~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
.|--|+-.. -.+..|. |..|..|+...+..+..||+|+.+++.+
T Consensus 4 nCKsCWf~~-----k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFAN-----KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S-------SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcC-----CCeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 355555443 1234675 9999999999999999999999988653
No 85
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=0.063 Score=59.55 Aligned_cols=42 Identities=26% Similarity=0.685 Sum_probs=34.8
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~ 78 (382)
...|.+|-..+ +-|.+--.|+|.||.+|+. .....||.|+..
T Consensus 840 ~skCs~C~~~L--dlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTL--DLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCcc--ccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 46999999998 5566667999999999998 556789999763
No 86
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.89 E-value=0.03 Score=64.33 Aligned_cols=44 Identities=32% Similarity=0.713 Sum_probs=37.7
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~ 78 (382)
..|.||++.+.. .-.+..|+|.||..|+..|+..+..||+|+..
T Consensus 1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 389999999942 24566899999999999999999999999753
No 87
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.084 Score=54.13 Aligned_cols=44 Identities=20% Similarity=0.486 Sum_probs=38.6
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcC---CCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMC 75 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s---~sCP~C 75 (382)
-..|||=.+.-.+.+||+.+.|||+.+.+-|.+..+.. ..||+|
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 46899988887777899999999999999999998764 569999
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.055 Score=53.96 Aligned_cols=43 Identities=26% Similarity=0.606 Sum_probs=29.4
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l 79 (382)
-.|.-|--.+ ...-++.+|+|+||++|... ..-+.||.|-..+
T Consensus 91 HfCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 3566665554 22246689999999999643 3457899996544
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.95 E-value=0.071 Score=38.19 Aligned_cols=41 Identities=24% Similarity=0.717 Sum_probs=22.5
Q ss_pred cccccccccCCCCceeecccCcccHhhHHHHHhcCC--CCCCC
Q 016793 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPMC 75 (382)
Q Consensus 35 C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~--sCP~C 75 (382)
|.+|.+.+..+..-.-..|.-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888875542111235888999999999998754 69988
No 90
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.85 E-value=0.14 Score=46.59 Aligned_cols=47 Identities=30% Similarity=0.774 Sum_probs=34.5
Q ss_pred CccccccccccccCCCCceeecccC-----cccHhhHHHHHhcC--CCCCCCccCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPISL 81 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH-----~FC~~CI~~Wlq~s--~sCP~CR~~l~~ 81 (382)
.+..|-||.+... . -..||.. ..|..|+.+|+..+ ..|+.|..++..
T Consensus 7 ~~~~CRIC~~~~~--~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD--V--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC--C--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3679999999852 2 1235553 56999999999754 579999987643
No 91
>PHA02862 5L protein; Provisional
Probab=91.79 E-value=0.12 Score=46.37 Aligned_cols=46 Identities=24% Similarity=0.650 Sum_probs=34.7
Q ss_pred ccccccccccccCCCCceeeccc-----CcccHhhHHHHHhc--CCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQR--SSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~Cg-----H~FC~~CI~~Wlq~--s~sCP~CR~~l~~ 81 (382)
++.|=||++.-.+ . .-||. ...|..|+.+|+.. ...|++|+.++..
T Consensus 2 ~diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999998522 2 34554 57899999999975 3579999988754
No 92
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.69 E-value=0.1 Score=54.23 Aligned_cols=35 Identities=14% Similarity=0.413 Sum_probs=29.2
Q ss_pred CCccccccccccccCCCCceeecccCcccHhhHHHHHh
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq 67 (382)
++++.|+||...|. .+++++|+|..|..|....+.
T Consensus 2 eeelkc~vc~~f~~---epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR---EPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhcc---CceEeecccHHHHHHHHhhcc
Confidence 45899999999993 378889999999999886553
No 93
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.67 E-value=0.17 Score=46.03 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=33.7
Q ss_pred CccccccccccccCCCCceeeccc------------C-cccHhhHHHHHhc-----------------------------
Q 016793 31 CDDACSICLEEFSESDPSTVTSCK------------H-EFHLQCVLEWCQR----------------------------- 68 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~Cg------------H-~FC~~CI~~Wlq~----------------------------- 68 (382)
+|.+|+||||..-+ .++|-|. . .-|.-||.++.+.
T Consensus 1 ed~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T PF07800_consen 1 EDVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE 77 (162)
T ss_pred CCccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence 46899999999732 4555442 2 2356788887642
Q ss_pred --CCCCCCCccCCCCCC
Q 016793 69 --SSQCPMCWQPISLKD 83 (382)
Q Consensus 69 --s~sCP~CR~~l~~kd 83 (382)
...||+||..+....
T Consensus 78 ~~~L~CPLCRG~V~GWt 94 (162)
T PF07800_consen 78 QPELACPLCRGEVKGWT 94 (162)
T ss_pred cccccCccccCceeceE
Confidence 124999999987653
No 94
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.36 E-value=0.13 Score=51.33 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=34.1
Q ss_pred CCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
-.-++||||.+.+.. ++..-.=||..|..|-. +....||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~--Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSP--PIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCcc--cceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 335899999999933 33332337999999964 45678999999987
No 95
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.95 E-value=0.13 Score=38.91 Aligned_cols=47 Identities=28% Similarity=0.592 Sum_probs=33.7
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
+..|-.|...- ....+++|+|..|..|..- .+-+-||.|-.++...+
T Consensus 7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccc---cccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 45677776663 3357789999999999533 34467999988886554
No 96
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.09 Score=48.12 Aligned_cols=30 Identities=27% Similarity=0.577 Sum_probs=26.3
Q ss_pred CCccccccccccccCCCCceeecccCcccH
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKHEFHL 59 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~ 59 (382)
....+|.||||++..++.+..|||..+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 346799999999998888888999999986
No 97
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=88.46 E-value=0.25 Score=50.47 Aligned_cols=31 Identities=26% Similarity=0.815 Sum_probs=24.3
Q ss_pred ccCcccHhhHHHHHhcC-------------CCCCCCccCCCCCC
Q 016793 53 CKHEFHLQCVLEWCQRS-------------SQCPMCWQPISLKD 83 (382)
Q Consensus 53 CgH~FC~~CI~~Wlq~s-------------~sCP~CR~~l~~kd 83 (382)
|...+|..|+-+|+... ..||+||+.+...|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 45678999999998532 35999999987655
No 98
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=0.54 Score=46.63 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=35.7
Q ss_pred ccccccccccCCC--CceeecccCcccHhhHHHHHhc-CCCCCCCccCCCCC
Q 016793 34 ACSICLEEFSESD--PSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK 82 (382)
Q Consensus 34 ~C~ICLe~f~~~~--~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~k 82 (382)
.|++|....--.. ...+-+|+|..|..|+...+.. ...||.|-..+.-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 6999987532221 2345699999999999999865 56899997766443
No 99
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.67 E-value=0.26 Score=47.73 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=36.0
Q ss_pred CCCCccccccccccccCCCCce--e-ecccCcccHhhHHHHHhcC-CCCC--CCccC
Q 016793 28 QDSCDDACSICLEEFSESDPST--V-TSCKHEFHLQCVLEWCQRS-SQCP--MCWQP 78 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~--v-l~CgH~FC~~CI~~Wlq~s-~sCP--~CR~~ 78 (382)
.+..|..||||..+.--...+. + +.|.|..|..|+.+.+... ..|| -|-+-
T Consensus 6 ~~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 6 EEMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hhhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 4455789999998642222233 3 3499999999999999765 5799 67543
No 100
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=0.064 Score=54.94 Aligned_cols=53 Identities=23% Similarity=0.499 Sum_probs=43.3
Q ss_pred CCccccccccccccCC-CCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 30 SCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~-~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
.-...|.||.+.|+.. +....+.|+|.||..||..|+.....||.|+..+...
T Consensus 194 slv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 3456899999998643 3355678999999999999999988999999887653
No 101
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.11 E-value=0.16 Score=55.45 Aligned_cols=47 Identities=30% Similarity=0.628 Sum_probs=37.5
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc---CCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~---s~sCP~CR~~l~~ 81 (382)
..+|+||+..+.. ++.+.|.|.||..|+..-+.. ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 5899999999844 477899999999998776644 4579999866644
No 102
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.25 E-value=0.46 Score=47.26 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=24.6
Q ss_pred ccCcccHhhHHHHHhc-------------CCCCCCCccCCCCCC
Q 016793 53 CKHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKD 83 (382)
Q Consensus 53 CgH~FC~~CI~~Wlq~-------------s~sCP~CR~~l~~kd 83 (382)
|...+|..|+.+|+.. +.+||+||+.+...|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 5678899999999743 357999999987654
No 103
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=83.39 E-value=0.7 Score=51.44 Aligned_cols=53 Identities=30% Similarity=0.719 Sum_probs=38.8
Q ss_pred CCCccccccccccccCCCCceeecccC-----cccHhhHHHHHhcC--CCCCCCccCCCCC
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH-----~FC~~CI~~Wlq~s--~sCP~CR~~l~~k 82 (382)
++++..|-||..+-..+++ -.-||+. ..|..|+.+|+..+ ..|-+|..++..+
T Consensus 9 N~d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CccchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 3446899999987544444 4446763 68999999999864 4699999887554
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.37 E-value=0.84 Score=40.58 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=39.6
Q ss_pred CCCCccccccccccccCCCCce-eecccCcccHhhHHHHHhc---CCCCCCCccCCCCC
Q 016793 28 QDSCDDACSICLEEFSESDPST-VTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~-vl~CgH~FC~~CI~~Wlq~---s~sCP~CR~~l~~k 82 (382)
.|..--+|.||.|...+..-.. ---||...|.-|-...|+. ...||+|+..+...
T Consensus 76 ~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 76 LDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred cCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3434569999999874432111 1369999999998887765 56899999888653
No 105
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=0.42 Score=49.25 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=33.3
Q ss_pred cccccccc-ccccCCCCceeecccCcccHhhHHHHHhcC------CCCCC--CccCCC
Q 016793 32 DDACSICL-EEFSESDPSTVTSCKHEFHLQCVLEWCQRS------SQCPM--CWQPIS 80 (382)
Q Consensus 32 d~~C~ICL-e~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s------~sCP~--CR~~l~ 80 (382)
..+|.||+ +......-..+..|+|.||..|+.++++.+ ..||. |...+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 56899999 444322222367999999999999998743 34755 544443
No 106
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.97 E-value=0.58 Score=52.44 Aligned_cols=35 Identities=29% Similarity=0.618 Sum_probs=29.2
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHh
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq 67 (382)
++.|.||...+.. .+-.+-+|||.||+.||.+...
T Consensus 817 ~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 817 QDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence 6799999998855 4567789999999999998753
No 107
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.92 E-value=0.81 Score=50.82 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=35.1
Q ss_pred CCCCCccccccccccccCCCC----ceeecccCcccHhhHHHHHhc------CCCCCCCccCC
Q 016793 27 IQDSCDDACSICLEEFSESDP----STVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPI 79 (382)
Q Consensus 27 iqd~ed~~C~ICLe~f~~~~~----~~vl~CgH~FC~~CI~~Wlq~------s~sCP~CR~~l 79 (382)
++....++|.||.-.+...+. ..+-.|+|.||..||..|..+ .-.|++|..-|
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 344446788888888754111 123359999999999999965 23477775433
No 108
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.11 E-value=0.81 Score=50.63 Aligned_cols=42 Identities=26% Similarity=0.671 Sum_probs=31.6
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM 74 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~ 74 (382)
-..|.||--.+. +-......|+|+.|..|..+|+.....||.
T Consensus 1028 ~~~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 345666655541 123456789999999999999999999997
No 109
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.10 E-value=0.82 Score=45.38 Aligned_cols=41 Identities=24% Similarity=0.620 Sum_probs=30.7
Q ss_pred CCCCCCccccccccccccCCCCceeecc----cCcccHhhHHHHHhcC
Q 016793 26 GIQDSCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQRS 69 (382)
Q Consensus 26 ~iqd~ed~~C~ICLe~f~~~~~~~vl~C----gH~FC~~CI~~Wlq~s 69 (382)
++....-+.|.+|.|-+.+. ....| .|.||+.|-.+.++.+
T Consensus 262 ~~A~~apLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 262 GAAPSAPLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ccCCCCceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhh
Confidence 33445568999999999553 33356 5999999999998764
No 110
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.09 E-value=1.2 Score=43.76 Aligned_cols=53 Identities=21% Similarity=0.570 Sum_probs=37.1
Q ss_pred CCccccccccccccCCCCc-eeeccc-----CcccHhhHHHHHhcC--------CCCCCCccCCCCC
Q 016793 30 SCDDACSICLEEFSESDPS-TVTSCK-----HEFHLQCVLEWCQRS--------SQCPMCWQPISLK 82 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~-~vl~Cg-----H~FC~~CI~~Wlq~s--------~sCP~CR~~l~~k 82 (382)
+.|..|-||+..=++.... -+-||. |..|..||..|+..+ ..||-|+..+...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 3468899999985443222 245664 789999999999542 2499998876443
No 111
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.07 E-value=1.1 Score=45.20 Aligned_cols=45 Identities=20% Similarity=0.425 Sum_probs=37.2
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcC---CCCCCCc
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCW 76 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s---~sCP~CR 76 (382)
-..||+--+.-.+.++|+.+.|||+.-..-+....+.. +.||+|=
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 46899877777777889999999999999998877653 5699993
No 112
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.33 E-value=0.77 Score=43.54 Aligned_cols=38 Identities=26% Similarity=0.574 Sum_probs=28.8
Q ss_pred cccccccccCCCCceeecccC-cccHhhHHHHHhcCCCCCCCccCC
Q 016793 35 CSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPI 79 (382)
Q Consensus 35 C~ICLe~f~~~~~~~vl~CgH-~FC~~CI~~Wlq~s~sCP~CR~~l 79 (382)
|-+|-+.- ..+.++||.| .+|..|-.. -..||+|+...
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChh
Confidence 88888874 4477899998 789989543 35599997654
No 113
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=78.90 E-value=1.8 Score=31.92 Aligned_cols=43 Identities=21% Similarity=0.559 Sum_probs=22.4
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhc-----CCCCCCCccC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQP 78 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-----s~sCP~CR~~ 78 (382)
+.|+|....+ ..+++...|.|.-|++ +..|+.. .-.||+|.++
T Consensus 3 L~CPls~~~i--~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI--RIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB---SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEE--EeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 6899999888 5567788999987765 3455532 2369999763
No 114
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=77.11 E-value=1.1 Score=42.65 Aligned_cols=45 Identities=24% Similarity=0.575 Sum_probs=36.5
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~ 78 (382)
-..|.+|...+.. ....-.|+-.||..|+..+++....||.|.--
T Consensus 181 lk~Cn~Ch~LvIq--g~rCg~c~i~~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQ--GIRCGSCNIQYHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHHhHhHHHhhe--eeccCcccchhhhHHHHHHhcccCcCCchhcc
Confidence 3589999998733 25566788889999999999999999999443
No 115
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.62 E-value=1.6 Score=45.64 Aligned_cols=39 Identities=23% Similarity=0.511 Sum_probs=31.7
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhc
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~ 68 (382)
.+..+.+|.||.+.+.. ....+.|+|.||..|...++..
T Consensus 66 ~~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 34557899999999833 4667899999999999998864
No 116
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.13 E-value=1.4 Score=48.11 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=30.3
Q ss_pred ccccccccccccCC-CCceeecccCcccHhhHHHHHhcCCCCC
Q 016793 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCP 73 (382)
Q Consensus 32 d~~C~ICLe~f~~~-~~~~vl~CgH~FC~~CI~~Wlq~s~sCP 73 (382)
-+.|+||+..|... -.++-+.|+|..|.+|+...+ +.+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 46899998776432 346778999999999998765 45677
No 117
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=72.56 E-value=2.5 Score=42.73 Aligned_cols=48 Identities=25% Similarity=0.645 Sum_probs=37.3
Q ss_pred cccccccccccCCCCc-eeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 33 DACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
..|+||.+.....+.. .-.+|++..|+.|+..-...+..||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 6899999987333322 22478889999999998899999999996654
No 118
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.00 E-value=2.3 Score=41.54 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=27.8
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHh
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq 67 (382)
=+.|..||..+.+ +++++=||+||..||++++.
T Consensus 43 FdcCsLtLqPc~d---Pvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD---PVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccC---CccCCCCeeeeHHHHHHHHH
Confidence 4689999999833 67889999999999999874
No 119
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=68.95 E-value=2.5 Score=41.06 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=35.4
Q ss_pred ccccccccccccCCCC-ceeeccc-----CcccHhhHHHHHh--cCCCCCCCccCCC
Q 016793 32 DDACSICLEEFSESDP-STVTSCK-----HEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~-~~vl~Cg-----H~FC~~CI~~Wlq--~s~sCP~CR~~l~ 80 (382)
+..|-||.+....... ..+.+|. +..|..|+..|+. ....|-+|+..+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 3689999997633221 3455664 5779999999997 4567999987654
No 120
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.02 E-value=1.6 Score=43.69 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=39.2
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
++.|.||...+.. +-+.-.|+|.||..|...|.....-||.|+..+..
T Consensus 105 ~~~~~~~~g~l~v--pt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 105 HDICYICYGKLTV--PTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred ccceeeeeeeEEe--cccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 6789999998833 23445699999999999999999999999876653
No 121
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=66.06 E-value=5.1 Score=30.35 Aligned_cols=32 Identities=22% Similarity=0.620 Sum_probs=25.6
Q ss_pred ccccccccccccCCCC-ceeecccCcccHhhHH
Q 016793 32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVL 63 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~-~~vl~CgH~FC~~CI~ 63 (382)
...|++|-+.|.+++. ++...|+-.||..|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4689999999975554 4558999999999953
No 122
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=64.97 E-value=4.1 Score=41.27 Aligned_cols=45 Identities=29% Similarity=0.524 Sum_probs=33.0
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCc
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR 76 (382)
+..|-.|.+........+...|++.||.+|=.-.-..-..||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 445999988776655567789999999999533323345799995
No 123
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=64.53 E-value=1.3 Score=35.17 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=23.1
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
|..||+|...+.. .. +|.+|..|-.. +.....||.|.++|.
T Consensus 1 e~~CP~C~~~L~~------~~-~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW------QG-GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE------ET-TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE------eC-CEEECcccccc-ceecccCCCcccHHH
Confidence 4689999999722 22 78889889764 344567999988764
No 124
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=63.79 E-value=2.9 Score=45.33 Aligned_cols=25 Identities=32% Similarity=0.881 Sum_probs=19.3
Q ss_pred ceeecccCcccHhhHHHHHhcCCCCCCC
Q 016793 48 STVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (382)
Q Consensus 48 ~~vl~CgH~FC~~CI~~Wlq~s~sCP~C 75 (382)
.....|+++||..|+. ..+..||.|
T Consensus 532 ~rC~~C~avfH~~C~~---r~s~~CPrC 556 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLR---RKSPCCPRC 556 (580)
T ss_pred eeHHHHHHHHHHHHHh---ccCCCCCch
Confidence 4567899999999953 344559999
No 125
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.56 E-value=3.6 Score=45.86 Aligned_cols=50 Identities=30% Similarity=0.595 Sum_probs=35.8
Q ss_pred CCCCCCccccccccccccCC----CCceeecccCcccHhhHHHHHhcCCCCCCCc
Q 016793 26 GIQDSCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (382)
Q Consensus 26 ~iqd~ed~~C~ICLe~f~~~----~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR 76 (382)
+..-..+..|.-|++..... ....+..|+|.||..|+.....+++ |-.|-
T Consensus 778 Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 778 GVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred CeeEeehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 33444466999999987422 2367789999999999987766555 66663
No 126
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.34 E-value=4.4 Score=41.85 Aligned_cols=42 Identities=26% Similarity=0.616 Sum_probs=31.5
Q ss_pred cccccccccccCC---CCceeecccCcccHhhHHHHHhcCCCCCCC
Q 016793 33 DACSICLEEFSES---DPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (382)
Q Consensus 33 ~~C~ICLe~f~~~---~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~C 75 (382)
..|++|.-.+.-. ..++.. |+|.||+.|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 5888888765322 124555 99999999999999888877665
No 127
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=57.80 E-value=18 Score=39.83 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=34.1
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhc----C--CCCCCCccCCCCCCcchHHHHHHHHH
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----S--SQCPMCWQPISLKDATSQELLEAVEQ 95 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s--~sCP~CR~~l~~kd~~~~~lle~ve~ 95 (382)
+.|+|+.--+ .-+.+-..|+|.=|++- .|+.. . -.||+|.+....+++.....+..+..
T Consensus 307 L~CPl~~~Rm--~~P~r~~~CkHlQcFD~--~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 307 LNCPLSKMRM--SLPARGHTCKHLQCFDA--LSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred ecCCccccee--ecCCcccccccceecch--hhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 4566655554 22334445555444433 24322 1 25999999999988887766655543
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=56.26 E-value=7.4 Score=43.40 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=31.9
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM 74 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~ 74 (382)
-.|.+|-..+.. .......|+|.-|..|+..|+....-||.
T Consensus 780 ~~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee-eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 378888777622 22445789999999999999999888876
No 129
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=55.73 E-value=11 Score=36.72 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=46.9
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcC--CCCCC--CccCCCCCCcchHHHHHHHHHHhhhc
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPM--CWQPISLKDATSQELLEAVEQERSIR 100 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s--~sCP~--CR~~l~~kd~~~~~lle~ve~er~~r 100 (382)
+++|+|-+..+ --++.-..|.|.|=.+-|...++.. ..||. |-+.+...++.-..+++.-+....++
T Consensus 189 ~nrCpitl~p~--~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir 259 (275)
T COG5627 189 SNRCPITLNPD--FYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIR 259 (275)
T ss_pred cccCCcccCcc--hhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHH
Confidence 68999977665 2334457999999999999999864 45875 76666666665556666555444444
No 130
>PLN02189 cellulose synthase
Probab=55.65 E-value=9.9 Score=43.95 Aligned_cols=52 Identities=19% Similarity=0.477 Sum_probs=35.8
Q ss_pred CCCCccccccccccccCCC--C--ceeecccCcccHhhHHHHHh--cCCCCCCCccCCC
Q 016793 28 QDSCDDACSICLEEFSESD--P--STVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~--~--~~vl~CgH~FC~~CI~~Wlq--~s~sCP~CR~~l~ 80 (382)
+......|.||-+.+.... . +.+-.|+--.|..|. ++-. .++.||-|+..+.
T Consensus 30 ~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 30 RNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 3444569999999975322 1 234568888999998 4432 4678999988765
No 131
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=55.11 E-value=1.8 Score=42.60 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCccccccccccccCCCCceee---cccCcccHhhHHHHHhcCCCCCCCccC
Q 016793 30 SCDDACSICLEEFSESDPSTVT---SCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl---~CgH~FC~~CI~~Wlq~s~sCP~CR~~ 78 (382)
+....||||=....-.. +... .-.|.+|..|-.+|--....||.|-..
T Consensus 170 w~~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 34579999988752110 0111 236889999999999888899999543
No 132
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.07 E-value=2.2 Score=41.76 Aligned_cols=49 Identities=24% Similarity=0.471 Sum_probs=37.9
Q ss_pred CCccccccccccccCC---CCceeec--------ccCcccHhhHHHHHhcC-CCCCCCccC
Q 016793 30 SCDDACSICLEEFSES---DPSTVTS--------CKHEFHLQCVLEWCQRS-SQCPMCWQP 78 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~---~~~~vl~--------CgH~FC~~CI~~Wlq~s-~sCP~CR~~ 78 (382)
..+..|.||...|... ..+.++. |+|..|..|+..-+... -.||.|+..
T Consensus 205 ~~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 205 IIEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 3457899999998622 2355666 99999999999988654 579999864
No 133
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.18 E-value=6.6 Score=42.19 Aligned_cols=45 Identities=31% Similarity=0.880 Sum_probs=37.3
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
.+.|.||+... ..++++|. |.-|+.+|+..+..||+|...+...+
T Consensus 479 ~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 67899999997 25667788 78899999999999999988776543
No 134
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=51.80 E-value=14 Score=37.58 Aligned_cols=53 Identities=21% Similarity=0.527 Sum_probs=36.0
Q ss_pred CCcccccccccccc--------------CCCCc--eeecccCcccHhhHHHHHhc---------CCCCCCCccCCCCC
Q 016793 30 SCDDACSICLEEFS--------------ESDPS--TVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISLK 82 (382)
Q Consensus 30 ~ed~~C~ICLe~f~--------------~~~~~--~vl~CgH~FC~~CI~~Wlq~---------s~sCP~CR~~l~~k 82 (382)
..+.+||+|+..-. +..++ ...||||..-.+-..-|.+- +..||.|-..|...
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 34789999987531 11112 34799998888888888753 35699998776543
No 135
>PLN02436 cellulose synthase A
Probab=51.43 E-value=13 Score=43.25 Aligned_cols=53 Identities=23% Similarity=0.602 Sum_probs=36.2
Q ss_pred CCCCCccccccccccccCC---CC-ceeecccCcccHhhHHHHHh--cCCCCCCCccCCC
Q 016793 27 IQDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (382)
Q Consensus 27 iqd~ed~~C~ICLe~f~~~---~~-~~vl~CgH~FC~~CI~~Wlq--~s~sCP~CR~~l~ 80 (382)
++.-....|.||-|.+... +. +.+-.|+--.|..|. ++-. .++.||-|+..+.
T Consensus 31 ~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 31 VQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccCCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 3444456999999997422 22 234567788999998 4432 3678999988765
No 136
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=49.66 E-value=5.5 Score=41.34 Aligned_cols=52 Identities=23% Similarity=0.583 Sum_probs=0.0
Q ss_pred Ccccccccccccc--------------CCCCc--eeecccCcccHhhHHHHHhc---------CCCCCCCccCCCCC
Q 016793 31 CDDACSICLEEFS--------------ESDPS--TVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISLK 82 (382)
Q Consensus 31 ed~~C~ICLe~f~--------------~~~~~--~vl~CgH~FC~~CI~~Wlq~---------s~sCP~CR~~l~~k 82 (382)
.+.+||+|+..-. +..++ ..-||||..-.+...-|.+- +..||.|-.+|...
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 3789999996521 21222 34699999888888889753 24699998877643
No 137
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=47.25 E-value=19 Score=29.34 Aligned_cols=53 Identities=15% Similarity=0.371 Sum_probs=21.0
Q ss_pred CCCCccccccccccccCCCC----ceeecccCcccHhhHHHHHh-cCCCCCCCccCCC
Q 016793 28 QDSCDDACSICLEEFSESDP----STVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPIS 80 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~----~~vl~CgH~FC~~CI~~Wlq-~s~sCP~CR~~l~ 80 (382)
++.....|.||-+.+..... +..-.|+--.|..|..-=.+ ..+.||.|+..+.
T Consensus 5 k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred hhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 34445689999998743221 23357888899999864443 4678999986654
No 138
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=45.95 E-value=13 Score=34.96 Aligned_cols=40 Identities=30% Similarity=0.709 Sum_probs=27.0
Q ss_pred cccccccccc-----ccCCCCceeecccCcccHhhHHHHHhcCCCCCCCc
Q 016793 32 DDACSICLEE-----FSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (382)
Q Consensus 32 d~~C~ICLe~-----f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR 76 (382)
-..|-||-.. |..........|+..||..|.. ...||.|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 3577788742 2122334567999999999965 26799993
No 139
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=45.60 E-value=8.3 Score=28.82 Aligned_cols=41 Identities=24% Similarity=0.634 Sum_probs=19.7
Q ss_pred cccccccccCCC-------CceeecccCcccHhhHHHHHhcCCCCCCC
Q 016793 35 CSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (382)
Q Consensus 35 C~ICLe~f~~~~-------~~~vl~CgH~FC~~CI~~Wlq~s~sCP~C 75 (382)
|.-|+..|.... ...-..|++.||.+|=.-.-+.-..||-|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC 49 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGC 49 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCC
Confidence 556677664321 12347899999999932211233469988
No 140
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=43.81 E-value=20 Score=41.65 Aligned_cols=48 Identities=21% Similarity=0.571 Sum_probs=34.0
Q ss_pred ccccccccccccCCC---C-ceeecccCcccHhhHHHHH--hcCCCCCCCccCCC
Q 016793 32 DDACSICLEEFSESD---P-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (382)
Q Consensus 32 d~~C~ICLe~f~~~~---~-~~vl~CgH~FC~~CI~~Wl--q~s~sCP~CR~~l~ 80 (382)
...|.||-|.+.... . +.+-.|+--.|..|. ++= ..++.||-|+..+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 458999999974322 1 334577778999998 443 34678999988764
No 141
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=42.65 E-value=13 Score=36.74 Aligned_cols=48 Identities=31% Similarity=0.563 Sum_probs=33.2
Q ss_pred cccccccccccCCCCce----eecccCcccHhhHHHHHhc---------CCCCCCCccCCC
Q 016793 33 DACSICLEEFSESDPST----VTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPIS 80 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~----vl~CgH~FC~~CI~~Wlq~---------s~sCP~CR~~l~ 80 (382)
.+|-||...+...+..+ -..|.-.+|..|+...+.. ...||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 58999999884333322 2468889999999995432 246999988543
No 142
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.82 E-value=20 Score=31.07 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=32.8
Q ss_pred ccccccccccccCCC-----------CceeecccCcccHhhHHHHHhcCCCCCCCc
Q 016793 32 DDACSICLEEFSESD-----------PSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (382)
Q Consensus 32 d~~C~ICLe~f~~~~-----------~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR 76 (382)
...|.-|+..|.... .-....|++.||.+|=.-|-..-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 356999999884310 123578999999999766666667799995
No 143
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=40.81 E-value=12 Score=28.50 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=19.6
Q ss_pred CCCccccccccccccCCC-CceeecccCcccHhhHHHHH
Q 016793 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWC 66 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~Wl 66 (382)
+.+...|.+|...|..-. ....-.||++||..|.....
T Consensus 6 d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 445679999999995422 23447899999999975443
No 144
>PLN02400 cellulose synthase
Probab=40.56 E-value=20 Score=41.70 Aligned_cols=53 Identities=17% Similarity=0.502 Sum_probs=36.0
Q ss_pred CCCCCccccccccccccCCCC----ceeecccCcccHhhHHHHH--hcCCCCCCCccCCC
Q 016793 27 IQDSCDDACSICLEEFSESDP----STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (382)
Q Consensus 27 iqd~ed~~C~ICLe~f~~~~~----~~vl~CgH~FC~~CI~~Wl--q~s~sCP~CR~~l~ 80 (382)
++.-....|.||-|++..... +.+-.|+--.|..|. ++= ..++.||-|+..+.
T Consensus 31 ~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 31 LKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCccc
Confidence 344445699999999743221 334577778999998 433 23678999988764
No 145
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=40.42 E-value=17 Score=31.15 Aligned_cols=49 Identities=20% Similarity=0.507 Sum_probs=30.1
Q ss_pred CCCCcccccccccccc--CCCCceeecccCcccHhhHHHHHhcCC--CCCCCcc
Q 016793 28 QDSCDDACSICLEEFS--ESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPMCWQ 77 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~--~~~~~~vl~CgH~FC~~CI~~Wlq~s~--sCP~CR~ 77 (382)
+...+..|.+|...|. .+.......|.|.+|..|-.. ..... .|-+|.+
T Consensus 50 ~~~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 50 QKYGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp TTHCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred cccCCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 3346789999998763 222356689999999999644 11112 4777744
No 146
>PLN02195 cellulose synthase A
Probab=40.04 E-value=28 Score=40.18 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=35.3
Q ss_pred ccccccccccccCCC---C-ceeecccCcccHhhHHHHHh--cCCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESD---P-STVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~---~-~~vl~CgH~FC~~CI~~Wlq--~s~sCP~CR~~l~~ 81 (382)
...|.||-+.+..+. + +.+-.|+--.|..|. ++=. .++.||-|+..+..
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcccc
Confidence 458999999874322 1 344678888999998 4433 36789999998873
No 147
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.79 E-value=9.3 Score=34.27 Aligned_cols=27 Identities=33% Similarity=0.928 Sum_probs=18.0
Q ss_pred cccccccccc-ccCCCCceeecccCcccHhhHHHHH
Q 016793 32 DDACSICLEE-FSESDPSTVTSCKHEFHLQCVLEWC 66 (382)
Q Consensus 32 d~~C~ICLe~-f~~~~~~~vl~CgH~FC~~CI~~Wl 66 (382)
|.+|.||+.. |.+ .||| .|..|-.+.+
T Consensus 65 datC~IC~KTKFAD-------G~GH-~C~YCq~r~C 92 (169)
T KOG3799|consen 65 DATCGICHKTKFAD-------GCGH-NCSYCQTRFC 92 (169)
T ss_pred Ccchhhhhhccccc-------ccCc-ccchhhhhHH
Confidence 7899999986 433 5777 3555655554
No 148
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.66 E-value=18 Score=28.62 Aligned_cols=12 Identities=25% Similarity=0.861 Sum_probs=8.9
Q ss_pred cccHhhHHHHHh
Q 016793 56 EFHLQCVLEWCQ 67 (382)
Q Consensus 56 ~FC~~CI~~Wlq 67 (382)
-||.-||..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 149
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=38.64 E-value=13 Score=38.68 Aligned_cols=33 Identities=18% Similarity=0.540 Sum_probs=24.5
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHH
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wl 66 (382)
.+|+||+-.+-.. .-.+..|....|..|+.++-
T Consensus 75 ~ecpicflyyps~-~n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 75 TECPICFLYYPSA-KNLVRCCSETICGECFAPFG 107 (482)
T ss_pred ccCceeeeecccc-cchhhhhccchhhhheeccc
Confidence 4899999988331 12345789999999998863
No 150
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.36 E-value=21 Score=39.62 Aligned_cols=43 Identities=33% Similarity=0.678 Sum_probs=33.2
Q ss_pred ccccccccccCCCCceeecccC-cccHhhHHHHHh--c----CCCCCCCccCC
Q 016793 34 ACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ--R----SSQCPMCWQPI 79 (382)
Q Consensus 34 ~C~ICLe~f~~~~~~~vl~CgH-~FC~~CI~~Wlq--~----s~sCP~CR~~l 79 (382)
.|+||...+ +-+..-.|+| ..|..|..+... . ...||+|+..+
T Consensus 2 ~c~ic~~s~---~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCc---cccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 599999987 3356679999 999999988753 2 35689999854
No 151
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=38.22 E-value=35 Score=28.96 Aligned_cols=46 Identities=20% Similarity=0.495 Sum_probs=29.1
Q ss_pred CccccccccccccCCCCcee------ecc---cCcccHhhHHHHHhc---------CCCCCCCcc
Q 016793 31 CDDACSICLEEFSESDPSTV------TSC---KHEFHLQCVLEWCQR---------SSQCPMCWQ 77 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~v------l~C---gH~FC~~CI~~Wlq~---------s~sCP~CR~ 77 (382)
.-..|..|...-.+ ..... ..| .-.||..||..++.. .-.||.||.
T Consensus 6 ~g~~CHqCrqKt~~-~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTLD-FKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCCC-CceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 34567777774311 11111 455 668999999998853 235999987
No 152
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=37.08 E-value=10 Score=42.68 Aligned_cols=47 Identities=19% Similarity=0.558 Sum_probs=32.8
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc------CCCCCCCccCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPI 79 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~------s~sCP~CR~~l 79 (382)
...|..|...+.. ..-+...|++.||..|+..|.-+ -..|++||..-
T Consensus 229 ~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 229 REMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred chhhhhhcccccc-eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 4588899886521 12456899999999999999621 13577776554
No 154
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=36.63 E-value=64 Score=24.74 Aligned_cols=44 Identities=18% Similarity=0.535 Sum_probs=30.9
Q ss_pred ccccccccccCCC-Cceeeccc--CcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 34 ACSICLEEFSESD-PSTVTSCK--HEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 34 ~C~ICLe~f~~~~-~~~vl~Cg--H~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
.|-.|-.++-.+. ...+ |. ..||..|....| ...||.|-..|..
T Consensus 7 nCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 5667777764433 2333 54 489999998877 6789999877654
No 155
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=36.05 E-value=9.2 Score=38.45 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=31.8
Q ss_pred ccccccccccccCCCCcee----ecccCcccHhhHHHHHhcCCCCCCCccC
Q 016793 32 DDACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~v----l~CgH~FC~~CI~~Wlq~s~sCP~CR~~ 78 (382)
...||||-....-.. +.. -.=.+.+|..|-.+|--....||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 459999988752110 011 1224678999999999889999999653
No 156
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.55 E-value=30 Score=34.12 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=35.9
Q ss_pred ccccccccccccCCC-CceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 32 d~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
...|||---+|.... -..+-.|||+|-..-+.+.- ...|++|.+.+...|
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccC
Confidence 457888766663221 24557999999988877643 678999998887665
No 157
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.63 E-value=12 Score=39.07 Aligned_cols=38 Identities=26% Similarity=0.562 Sum_probs=27.3
Q ss_pred ccccccccccccCCCC---cee--ecccCcccHhhHHHHHhcC
Q 016793 32 DDACSICLEEFSESDP---STV--TSCKHEFHLQCVLEWCQRS 69 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~---~~v--l~CgH~FC~~CI~~Wlq~s 69 (382)
...||.|...+..... ... .+|+|.||+.|+..|..+.
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 3459999998854331 122 2499999999999998764
No 158
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=33.75 E-value=8.9 Score=28.23 Aligned_cols=33 Identities=21% Similarity=0.564 Sum_probs=21.1
Q ss_pred cccc--cccccccCC----CC-ceeecccCcccHhhHHHH
Q 016793 33 DACS--ICLEEFSES----DP-STVTSCKHEFHLQCVLEW 65 (382)
Q Consensus 33 ~~C~--ICLe~f~~~----~~-~~vl~CgH~FC~~CI~~W 65 (382)
.-|| -|...+... .. +....|+|.||+.|...|
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 3577 675544322 22 233478999999998887
No 159
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.89 E-value=14 Score=37.36 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=32.4
Q ss_pred CccccccccccccCCCCcee----ecccCcccHhhHHHHHhcCCCCCCCcc
Q 016793 31 CDDACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~v----l~CgH~FC~~CI~~Wlq~s~sCP~CR~ 77 (382)
....||||-....-. ++. -.=.|.+|..|-.+|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 368999998874211 110 122467899999999988999999965
No 161
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=32.66 E-value=15 Score=38.30 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=0.0
Q ss_pred cccccccccccc-----------CCCCceeecccCcccHhhHHHHHhc------CCCCCCCccCCCC
Q 016793 32 DDACSICLEEFS-----------ESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~-----------~~~~~~vl~CgH~FC~~CI~~Wlq~------s~sCP~CR~~l~~ 81 (382)
-.+||+=|..+. ...+-+.+.|||++..+ .|-.. ...||+||..-..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 467887765542 22334568999987754 57542 3569999876443
No 162
>KOG3337 consensus Protein similar to predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.05 E-value=15 Score=34.33 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=20.3
Q ss_pred HHhhhhhhh-hhhhhhcccccccchhhhh
Q 016793 270 SLKSRFNAV-SMRYKESISKSTRGWKERL 297 (382)
Q Consensus 270 s~ks~~~~~-s~~yk~s~~k~t~g~ke~~ 297 (382)
.++++.+-- -|||||+|+|+++|+-+.|
T Consensus 135 G~~r~Vqe~sl~rFkenv~ktrkGl~yvl 163 (201)
T KOG3337|consen 135 GVSRAVQEFSLARFKENVTKTRKGLEYVL 163 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345555443 3799999999999997543
No 163
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=30.83 E-value=44 Score=21.58 Aligned_cols=37 Identities=19% Similarity=0.581 Sum_probs=21.8
Q ss_pred ccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCC
Q 016793 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (382)
Q Consensus 34 ~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l 79 (382)
.|..|-..+.... ..+..=+..||..| ..|..|..+|
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccC--------CCCcccCCcC
Confidence 3778888774421 23323356677666 4677777665
No 164
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=30.33 E-value=36 Score=39.61 Aligned_cols=48 Identities=21% Similarity=0.564 Sum_probs=34.0
Q ss_pred ccccccccccccCCC---C-ceeecccCcccHhhHHHHH--hcCCCCCCCccCCC
Q 016793 32 DDACSICLEEFSESD---P-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (382)
Q Consensus 32 d~~C~ICLe~f~~~~---~-~~vl~CgH~FC~~CI~~Wl--q~s~sCP~CR~~l~ 80 (382)
...|.||-|.+.... + +.+-.|+--.|..|. ++- ..++.||.|+..+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 458999999974322 1 334577778999998 443 24678999988775
No 165
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=29.70 E-value=9.7 Score=23.70 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=4.0
Q ss_pred CCCCCCCcc
Q 016793 69 SSQCPMCWQ 77 (382)
Q Consensus 69 s~sCP~CR~ 77 (382)
...||.|-.
T Consensus 13 ~~fC~~CG~ 21 (23)
T PF13240_consen 13 AKFCPNCGT 21 (23)
T ss_pred CcchhhhCC
Confidence 334555543
No 166
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=27.90 E-value=20 Score=39.81 Aligned_cols=52 Identities=27% Similarity=0.548 Sum_probs=34.0
Q ss_pred CCCCccccccccccccCCCC-----ce--eecccCcccHhhHHHHH---h-------cCCCCCCCccCC
Q 016793 28 QDSCDDACSICLEEFSESDP-----ST--VTSCKHEFHLQCVLEWC---Q-------RSSQCPMCWQPI 79 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~-----~~--vl~CgH~FC~~CI~~Wl---q-------~s~sCP~CR~~l 79 (382)
+|-...+|+||-|.-.+.+. +. .-.|+..||..|....- + .-+.|-+|+..|
T Consensus 113 ~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 113 HDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred hhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 55567899999998433222 11 24677889999976642 1 125699998654
No 167
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=26.32 E-value=24 Score=25.06 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=25.8
Q ss_pred ccccccccccCCCCceeecccCcccHhhHHHHHh------cCCCCCCCc
Q 016793 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ------RSSQCPMCW 76 (382)
Q Consensus 34 ~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq------~s~sCP~CR 76 (382)
.|.||......+.-+.--.|...||..|+..-.. ....||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4888888432222233357888999999755432 134577664
No 168
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=25.18 E-value=31 Score=26.93 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.1
Q ss_pred cccccc-ccchhHHHHHHHHhcCCC
Q 016793 309 SENRSE-NVGITSVSRLMEQLGTGE 332 (382)
Q Consensus 309 ~~~~re-~agia~v~rm~e~l~~~~ 332 (382)
+-+||. .-|-.-.+|+||+||..+
T Consensus 24 S~lQR~~rIGynrAariid~LE~~G 48 (65)
T PF09397_consen 24 SLLQRKFRIGYNRAARIIDQLEEEG 48 (65)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 457999 999999999999999665
No 169
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=24.54 E-value=40 Score=24.72 Aligned_cols=36 Identities=31% Similarity=0.594 Sum_probs=21.1
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc--CCCCCCCcc
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQ 77 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~--s~sCP~CR~ 77 (382)
...||.|-+.|.. . .+...|....... ...||+|..
T Consensus 2 ~f~CP~C~~~~~~---~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSE---S-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCH---H-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 4689999996521 1 1334444444432 356999965
No 170
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=24.44 E-value=58 Score=23.38 Aligned_cols=39 Identities=18% Similarity=0.496 Sum_probs=24.0
Q ss_pred cccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 35 C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
|..|-..+.. ....+..-+..||..| ..|-.|...|...
T Consensus 1 C~~C~~~I~~-~~~~~~~~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYG-TEIVIKAMGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESS-SSEEEEETTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccC-cEEEEEeCCcEEEccc--------cccCCCCCccCCC
Confidence 5667777643 2233335667777766 5677887777654
No 171
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=24.12 E-value=49 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=24.5
Q ss_pred cccccccccccCCC-CceeecccCcccHhhHHHHH
Q 016793 33 DACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWC 66 (382)
Q Consensus 33 ~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~Wl 66 (382)
..|.+|-..|.... ......||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 57999988774322 23457899999999976554
No 172
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.20 E-value=23 Score=29.36 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCCCCCCcccccc--ccchhHHHHHHHHhcCCC
Q 016793 301 NASMPGTGSENRSE--NVGITSVSRLMEQLGTGE 332 (382)
Q Consensus 301 ~~~~~~~~~~~~re--~agia~v~rm~e~l~~~~ 332 (382)
.-|+.||-..++++ +.+.++|+|.++.|...+
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 35677888888777 899999999999998655
No 173
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=22.65 E-value=32 Score=29.61 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=15.4
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHH
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wl 66 (382)
-.|++|-.+|...+. .+.+|..|..+|-
T Consensus 4 p~cp~c~sEytYed~------~~~~cpec~~ew~ 31 (112)
T COG2824 4 PPCPKCNSEYTYEDG------GQLICPECAHEWN 31 (112)
T ss_pred CCCCccCCceEEecC------ceEeCchhccccc
Confidence 368888887733221 2345555555554
No 174
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=22.55 E-value=24 Score=28.04 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=27.0
Q ss_pred hhcCCCCCCccccccccccccCCCCc--eeecccCcccHhhHHH
Q 016793 23 VEGGIQDSCDDACSICLEEFSESDPS--TVTSCKHEFHLQCVLE 64 (382)
Q Consensus 23 v~g~iqd~ed~~C~ICLe~f~~~~~~--~vl~CgH~FC~~CI~~ 64 (382)
+...+.......|.+|-... +..+ ....|.-.||..|...
T Consensus 27 v~~~~~~~~~~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 27 VEKEIKRRRKLKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HHHHHHHHhCCCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 34444445567999999884 3222 2357888999999765
No 175
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.31 E-value=58 Score=27.58 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wl 66 (382)
+-.|.||-..+..++.-+.++ .-..|+.|+.+=.
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~ 39 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESK 39 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHH
Confidence 458999999998887777777 6678999987754
No 176
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.64 E-value=45 Score=28.02 Aligned_cols=14 Identities=21% Similarity=0.722 Sum_probs=11.8
Q ss_pred CcccHhhHHHHHhc
Q 016793 55 HEFHLQCVLEWCQR 68 (382)
Q Consensus 55 H~FC~~CI~~Wlq~ 68 (382)
--||.-||..|+..
T Consensus 41 AgFCRNCLs~Wy~e 54 (104)
T COG3492 41 AGFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 35999999999964
No 177
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.53 E-value=1e+02 Score=24.89 Aligned_cols=48 Identities=15% Similarity=0.440 Sum_probs=29.1
Q ss_pred ccccccccccCCC-CceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 34 ACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 34 ~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
.|--|-.++-.+. ...+-.=.|.||..|...-| +..||.|-..+.-..
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP 55 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVARP 55 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCc
Confidence 3445555553221 12222224789999987654 578999988776543
No 178
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=21.52 E-value=75 Score=32.85 Aligned_cols=15 Identities=13% Similarity=0.674 Sum_probs=11.7
Q ss_pred CCCCccccccccccc
Q 016793 28 QDSCDDACSICLEEF 42 (382)
Q Consensus 28 qd~ed~~C~ICLe~f 42 (382)
.+..+.-||+|-+.+
T Consensus 11 dedl~ElCPVCGDkV 25 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKV 25 (475)
T ss_pred ccccccccccccCcc
Confidence 444577899999987
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.36 E-value=71 Score=30.88 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=20.7
Q ss_pred ccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 57 FHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 57 FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
-|..|-...-..-..||+|+..-..+++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCC
Confidence 5788876655666889999987766554
No 180
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=20.89 E-value=12 Score=27.42 Aligned_cols=33 Identities=30% Similarity=0.610 Sum_probs=18.2
Q ss_pred ccccc--ccccccCCCC-----ceeecccCcccHhhHHHH
Q 016793 33 DACSI--CLEEFSESDP-----STVTSCKHEFHLQCVLEW 65 (382)
Q Consensus 33 ~~C~I--CLe~f~~~~~-----~~vl~CgH~FC~~CI~~W 65 (382)
.-|+- |-..+..... ++-..|++.||..|...|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 47876 7777643221 234559999999998777
No 181
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.80 E-value=48 Score=36.84 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=27.5
Q ss_pred ccccccccccc-CCCCceeecccCcccHhhHHHHHhcCCCCCCC
Q 016793 33 DACSICLEEFS-ESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (382)
Q Consensus 33 ~~C~ICLe~f~-~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~C 75 (382)
.+|-+|...=. ..+-...+.|+-.||..| |+.-.+.||+|
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC 695 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVC 695 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCccc
Confidence 46777876531 112235568999999998 56667789999
No 182
>PLN02248 cellulose synthase-like protein
Probab=20.80 E-value=69 Score=37.66 Aligned_cols=33 Identities=21% Similarity=0.617 Sum_probs=28.1
Q ss_pred ecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 51 TSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 51 l~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
-.|++..|.+|...-++....||-|+.++...+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 148 CECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred ccccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 367789999999999999899999999886543
No 183
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=20.68 E-value=48 Score=25.84 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred cccccc-ccchhHHHHHHHHhcCCC
Q 016793 309 SENRSE-NVGITSVSRLMEQLGTGE 332 (382)
Q Consensus 309 ~~~~re-~agia~v~rm~e~l~~~~ 332 (382)
|-+||. .-|..--+|+||+||..+
T Consensus 23 S~lQR~~~IGynrAariid~lE~~G 47 (63)
T smart00843 23 SLLQRRLRIGYNRAARLIDQLEEEG 47 (63)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHCc
Confidence 457999 999999999999999665
No 184
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=20.52 E-value=69 Score=31.24 Aligned_cols=29 Identities=17% Similarity=0.487 Sum_probs=21.4
Q ss_pred cccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 56 EFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 56 ~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
..|..|-...-..-..||+|+.....+++
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRSrNP 278 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRSRNP 278 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccccCCC
Confidence 35778877766677899999887765554
Done!