Query 016793
Match_columns 382
No_of_seqs 248 out of 1584
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.4 2.4E-13 8.3E-18 109.6 4.9 73 9-81 15-89 (91)
2 2kiz_A E3 ubiquitin-protein li 99.4 4.3E-13 1.5E-17 101.9 5.6 56 28-83 10-65 (69)
3 2ect_A Ring finger protein 126 99.4 4.5E-13 1.5E-17 104.1 5.0 54 30-83 13-66 (78)
4 2ep4_A Ring finger protein 24; 99.3 7.2E-13 2.5E-17 102.0 5.4 54 29-82 12-65 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.3 5.1E-13 1.8E-17 96.9 4.1 50 31-80 4-54 (55)
6 1x4j_A Ring finger protein 38; 99.3 4.9E-13 1.7E-17 103.5 3.6 53 29-81 20-72 (75)
7 2djb_A Polycomb group ring fin 99.3 1.3E-12 4.4E-17 100.4 4.5 52 31-84 14-65 (72)
8 1t1h_A Gspef-atpub14, armadill 99.3 1.3E-12 4.5E-17 101.5 4.6 60 29-91 5-65 (78)
9 3ng2_A RNF4, snurf, ring finge 99.3 1.4E-12 5E-17 99.0 3.8 57 28-84 6-66 (71)
10 2ecm_A Ring finger and CHY zin 99.3 2.5E-12 8.7E-17 93.1 4.4 50 31-80 4-54 (55)
11 3lrq_A E3 ubiquitin-protein li 99.3 9E-13 3.1E-17 108.0 2.1 59 32-93 22-82 (100)
12 1v87_A Deltex protein 2; ring- 99.3 3.9E-12 1.3E-16 105.7 5.7 68 11-82 8-95 (114)
13 2csy_A Zinc finger protein 183 99.3 5.8E-12 2E-16 98.7 6.0 49 29-80 12-60 (81)
14 2ea6_A Ring finger protein 4; 99.3 2.7E-12 9.1E-17 96.7 3.7 52 30-81 13-68 (69)
15 2y43_A E3 ubiquitin-protein li 99.2 2.6E-12 8.9E-17 104.4 3.5 59 32-93 22-81 (99)
16 2ecl_A Ring-box protein 2; RNF 99.2 3.3E-12 1.1E-16 101.0 4.0 54 29-82 12-77 (81)
17 2d8t_A Dactylidin, ring finger 99.2 4E-12 1.4E-16 97.4 3.9 50 29-81 12-61 (71)
18 1chc_A Equine herpes virus-1 r 99.2 4.9E-12 1.7E-16 95.5 3.8 49 31-81 4-52 (68)
19 4ayc_A E3 ubiquitin-protein li 99.2 3.7E-12 1.3E-16 110.0 3.4 49 32-83 53-101 (138)
20 2xeu_A Ring finger protein 4; 99.2 4.6E-12 1.6E-16 94.0 3.3 54 31-84 2-59 (64)
21 2ysl_A Tripartite motif-contai 99.2 8.6E-12 3E-16 95.3 4.8 50 31-83 19-71 (73)
22 3ztg_A E3 ubiquitin-protein li 99.2 1.2E-11 4E-16 98.9 5.4 60 31-93 12-75 (92)
23 2ct2_A Tripartite motif protei 99.2 1E-11 3.5E-16 97.9 4.9 53 31-83 14-70 (88)
24 3fl2_A E3 ubiquitin-protein li 99.2 1.1E-11 3.6E-16 104.9 5.1 60 32-94 52-113 (124)
25 2ckl_A Polycomb group ring fin 99.2 9.9E-12 3.4E-16 102.6 4.6 49 32-82 15-63 (108)
26 2yur_A Retinoblastoma-binding 99.2 9.6E-12 3.3E-16 96.3 4.3 50 31-83 14-66 (74)
27 2ecy_A TNF receptor-associated 99.2 1.2E-11 4E-16 93.4 4.2 50 31-83 14-64 (66)
28 2ecw_A Tripartite motif-contai 99.2 1.6E-11 5.3E-16 95.8 4.1 50 31-83 18-73 (85)
29 3dpl_R Ring-box protein 1; ubi 99.2 1.5E-11 5.2E-16 102.7 4.3 52 30-81 35-101 (106)
30 2kr4_A Ubiquitin conjugation f 99.2 2E-11 6.9E-16 97.6 4.7 60 31-93 13-72 (85)
31 2ecn_A Ring finger protein 141 99.1 7.8E-12 2.7E-16 95.1 1.9 50 30-83 13-62 (70)
32 1z6u_A NP95-like ring finger p 99.1 3.1E-11 1.1E-15 106.2 5.9 62 31-95 77-140 (150)
33 2kre_A Ubiquitin conjugation f 99.1 4.2E-11 1.4E-15 98.8 6.2 63 31-96 28-90 (100)
34 1wgm_A Ubiquitin conjugation f 99.1 3.3E-11 1.1E-15 99.1 5.4 63 31-96 21-84 (98)
35 2ecv_A Tripartite motif-contai 99.1 2.1E-11 7.2E-16 95.0 3.9 50 31-83 18-73 (85)
36 2egp_A Tripartite motif-contai 99.1 7.1E-12 2.4E-16 97.1 1.1 50 31-83 11-67 (79)
37 2ckl_B Ubiquitin ligase protei 99.1 2.6E-11 8.9E-16 107.3 3.3 60 32-93 54-115 (165)
38 2ysj_A Tripartite motif-contai 99.1 6.1E-11 2.1E-15 88.4 4.4 42 31-75 19-63 (63)
39 1jm7_B BARD1, BRCA1-associated 99.1 3.9E-11 1.3E-15 100.6 2.9 56 32-92 22-78 (117)
40 1jm7_A BRCA1, breast cancer ty 99.1 2.9E-11 9.8E-16 99.6 1.6 49 32-83 21-72 (112)
41 1g25_A CDK-activating kinase a 99.1 8.9E-11 3E-15 88.2 3.9 54 31-84 2-58 (65)
42 4ap4_A E3 ubiquitin ligase RNF 99.0 8.3E-11 2.8E-15 98.7 3.8 54 30-83 5-62 (133)
43 3hct_A TNF receptor-associated 99.0 8.4E-11 2.9E-15 98.7 3.7 61 31-94 17-78 (118)
44 4a0k_B E3 ubiquitin-protein li 99.0 3.2E-11 1.1E-15 102.7 0.4 52 30-81 46-112 (117)
45 3l11_A E3 ubiquitin-protein li 99.0 4E-11 1.4E-15 99.9 0.9 49 30-81 13-62 (115)
46 2ecj_A Tripartite motif-contai 99.0 1.5E-10 5.2E-15 84.4 3.3 42 31-75 14-58 (58)
47 2c2l_A CHIP, carboxy terminus 99.0 2.5E-10 8.5E-15 107.0 5.3 65 28-95 204-269 (281)
48 2d8s_A Cellular modulator of i 99.0 2.3E-10 7.8E-15 91.0 3.9 54 28-82 11-71 (80)
49 2yu4_A E3 SUMO-protein ligase 99.0 3E-10 1E-14 92.1 4.7 63 31-96 6-78 (94)
50 1rmd_A RAG1; V(D)J recombinati 98.9 2.6E-10 8.7E-15 95.1 3.2 50 32-84 23-73 (116)
51 1e4u_A Transcriptional repress 98.9 5.3E-10 1.8E-14 88.3 4.5 53 30-83 9-64 (78)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 4.8E-10 1.7E-14 94.0 3.2 56 29-84 69-128 (133)
53 3knv_A TNF receptor-associated 98.9 3.4E-10 1.2E-14 98.7 1.7 48 31-81 30-78 (141)
54 1bor_A Transcription factor PM 98.9 4.4E-10 1.5E-14 82.7 1.6 49 29-83 3-51 (56)
55 2vje_A E3 ubiquitin-protein li 98.9 1.5E-09 5.2E-14 82.1 4.2 48 30-80 6-56 (64)
56 2f42_A STIP1 homology and U-bo 98.8 1.7E-09 5.9E-14 98.2 4.8 63 30-95 104-167 (179)
57 2ct0_A Non-SMC element 1 homol 98.8 3.6E-09 1.2E-13 83.1 5.0 50 32-83 15-66 (74)
58 3hcs_A TNF receptor-associated 98.8 2E-09 7E-14 95.4 3.7 61 31-94 17-78 (170)
59 2vje_B MDM4 protein; proto-onc 98.8 3.8E-09 1.3E-13 79.7 3.8 47 31-80 6-55 (63)
60 2y1n_A E3 ubiquitin-protein li 98.8 4.1E-09 1.4E-13 106.0 4.9 48 32-82 332-380 (389)
61 4ic3_A E3 ubiquitin-protein li 98.8 1.8E-09 6.1E-14 83.8 1.6 43 32-81 24-67 (74)
62 3htk_C E3 SUMO-protein ligase 98.7 2.7E-09 9.4E-14 102.1 2.9 61 31-93 180-244 (267)
63 2ecg_A Baculoviral IAP repeat- 98.6 1.2E-08 4E-13 79.1 1.8 44 32-82 25-69 (75)
64 2ea5_A Cell growth regulator w 98.5 6.9E-08 2.4E-12 74.0 3.9 47 28-81 11-58 (68)
65 2bay_A PRE-mRNA splicing facto 98.5 5.5E-08 1.9E-12 73.3 2.7 50 32-84 3-53 (61)
66 2yho_A E3 ubiquitin-protein li 98.5 3.2E-08 1.1E-12 78.0 1.2 43 32-81 18-61 (79)
67 1wim_A KIAA0161 protein; ring 98.4 6.1E-08 2.1E-12 78.0 2.2 48 31-78 4-61 (94)
68 3k1l_B Fancl; UBC, ring, RWD, 98.3 8.8E-08 3E-12 94.9 1.6 53 29-81 305-373 (381)
69 3t6p_A Baculoviral IAP repeat- 98.3 1.1E-07 3.9E-12 94.2 1.5 43 32-81 295-338 (345)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.3E-07 1.5E-11 68.2 4.0 51 28-81 2-59 (60)
71 3vk6_A E3 ubiquitin-protein li 97.9 4E-06 1.4E-10 69.3 3.2 46 34-81 3-49 (101)
72 3nw0_A Non-structural maintena 97.5 5.5E-05 1.9E-09 71.3 4.3 51 32-84 180-232 (238)
73 2ko5_A Ring finger protein Z; 95.4 0.0057 1.9E-07 49.9 2.0 47 32-82 28-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.3 0.0085 2.9E-07 48.0 2.9 34 31-66 2-37 (101)
75 2lri_C Autoimmune regulator; Z 91.1 0.14 5E-06 38.7 3.1 54 23-79 3-60 (66)
76 3m62_A Ubiquitin conjugation f 89.6 0.27 9.2E-06 54.5 4.9 61 30-93 889-950 (968)
77 3i2d_A E3 SUMO-protein ligase 85.5 0.48 1.7E-05 47.2 3.5 61 32-94 249-313 (371)
78 4fo9_A E3 SUMO-protein ligase 83.7 0.74 2.5E-05 45.7 3.9 61 32-94 215-279 (360)
79 2l5u_A Chromodomain-helicase-D 80.4 0.66 2.3E-05 34.2 1.6 49 26-77 5-57 (61)
80 2cs3_A Protein C14ORF4, MY039 79.2 1.9 6.5E-05 34.2 3.9 39 30-68 13-52 (93)
81 1we9_A PHD finger family prote 78.8 0.32 1.1E-05 36.0 -0.6 50 29-78 3-58 (64)
82 3o36_A Transcription intermedi 74.8 0.7 2.4E-05 41.0 0.4 46 31-79 3-52 (184)
83 1xwh_A Autoimmune regulator; P 73.8 0.49 1.7E-05 35.4 -0.8 51 25-78 1-55 (66)
84 1fp0_A KAP-1 corepressor; PHD 73.2 1.4 4.9E-05 35.2 1.8 53 25-80 18-74 (88)
85 2ysm_A Myeloid/lymphoid or mix 72.0 1.2 4.1E-05 36.3 1.1 49 28-76 3-55 (111)
86 1mm2_A MI2-beta; PHD, zinc fin 71.7 0.85 2.9E-05 33.6 0.1 47 29-78 6-56 (61)
87 3u5n_A E3 ubiquitin-protein li 71.1 0.61 2.1E-05 42.3 -0.9 48 29-79 4-55 (207)
88 2k16_A Transcription initiatio 71.0 0.83 2.9E-05 34.7 -0.0 49 30-79 16-69 (75)
89 1wil_A KIAA1045 protein; ring 70.1 3.7 0.00013 32.8 3.5 34 31-65 14-47 (89)
90 1weo_A Cellulose synthase, cat 66.5 8.7 0.0003 30.9 5.0 54 27-80 11-69 (93)
91 2lbm_A Transcriptional regulat 66.0 4.7 0.00016 34.9 3.6 47 28-77 59-116 (142)
92 2lv9_A Histone-lysine N-methyl 63.6 1.9 6.4E-05 34.8 0.6 46 31-77 27-75 (98)
93 3lqh_A Histone-lysine N-methyl 62.5 1.8 6.1E-05 39.0 0.3 48 33-80 3-65 (183)
94 1weu_A Inhibitor of growth fam 61.8 4.6 0.00016 32.3 2.7 52 24-79 28-86 (91)
95 1f62_A Transcription factor WS 61.0 3.5 0.00012 28.8 1.6 44 34-77 2-49 (51)
96 2yql_A PHD finger protein 21A; 60.0 0.85 2.9E-05 32.9 -1.8 45 29-76 6-54 (56)
97 2ri7_A Nucleosome-remodeling f 59.7 1.5 5E-05 38.4 -0.7 51 26-77 2-58 (174)
98 2d8v_A Zinc finger FYVE domain 59.4 5.1 0.00017 30.5 2.3 35 27-65 3-38 (67)
99 1wew_A DNA-binding family prot 59.1 1.9 6.5E-05 33.2 -0.1 54 23-78 7-72 (78)
100 1wem_A Death associated transc 59.1 1.9 6.7E-05 32.8 -0.0 47 30-78 14-70 (76)
101 1wep_A PHF8; structural genomi 58.9 4.7 0.00016 30.9 2.2 49 30-79 10-64 (79)
102 1z60_A TFIIH basal transcripti 56.3 3.4 0.00012 30.7 0.9 43 33-75 16-58 (59)
103 2puy_A PHD finger protein 21A; 54.4 1.7 5.7E-05 31.7 -1.1 46 29-77 2-51 (60)
104 1joc_A EEA1, early endosomal a 53.7 6 0.00021 33.2 2.1 37 28-64 65-102 (125)
105 1wen_A Inhibitor of growth fam 53.6 8.7 0.0003 29.1 2.8 49 26-79 10-66 (71)
106 1z2q_A LM5-1; membrane protein 52.7 7.4 0.00025 30.2 2.4 38 28-65 17-55 (84)
107 2ro1_A Transcription intermedi 51.6 3.4 0.00012 37.0 0.3 44 32-78 2-49 (189)
108 1x4u_A Zinc finger, FYVE domai 50.9 7.6 0.00026 30.1 2.2 35 28-62 10-45 (84)
109 3t7l_A Zinc finger FYVE domain 50.7 7.5 0.00026 30.7 2.1 37 29-65 17-54 (90)
110 2vpb_A Hpygo1, pygopus homolog 50.0 9.2 0.00031 28.5 2.4 34 30-63 6-41 (65)
111 2yw8_A RUN and FYVE domain-con 49.8 7.4 0.00025 30.1 1.9 37 28-64 15-52 (82)
112 1wd2_A Ariadne-1 protein homol 48.7 2.9 0.0001 30.8 -0.5 38 32-69 6-48 (60)
113 2zet_C Melanophilin; complex, 48.1 9.6 0.00033 33.2 2.6 46 31-77 67-116 (153)
114 2kgg_A Histone demethylase jar 47.7 5.8 0.0002 28.0 0.9 44 33-76 3-52 (52)
115 2e6r_A Jumonji/ARID domain-con 46.4 1.7 5.7E-05 34.8 -2.4 50 28-77 12-65 (92)
116 1y02_A CARP2, FYVE-ring finger 46.0 1.5 5.1E-05 37.0 -2.8 50 29-78 16-66 (120)
117 3mpx_A FYVE, rhogef and PH dom 44.6 4.6 0.00016 39.7 0.0 51 29-79 372-430 (434)
118 3v43_A Histone acetyltransfera 44.3 23 0.00078 28.8 4.2 32 32-63 5-42 (112)
119 1zbd_B Rabphilin-3A; G protein 44.2 7 0.00024 33.3 1.1 34 30-63 53-88 (134)
120 1dvp_A HRS, hepatocyte growth 43.4 8.4 0.00029 34.9 1.5 33 32-64 161-194 (220)
121 2pv0_B DNA (cytosine-5)-methyl 41.0 21 0.00072 35.7 4.1 48 28-78 89-148 (386)
122 2xb1_A Pygopus homolog 2, B-ce 40.1 11 0.00038 30.6 1.7 46 33-78 4-61 (105)
123 3ql9_A Transcriptional regulat 39.5 19 0.00066 30.5 3.1 46 29-77 54-110 (129)
124 3zyq_A Hepatocyte growth facto 39.3 10 0.00035 34.7 1.5 34 32-65 164-198 (226)
125 2l43_A N-teminal domain from h 38.9 3.9 0.00013 32.3 -1.3 55 28-82 21-79 (88)
126 3o70_A PHD finger protein 13; 38.8 3.6 0.00012 31.0 -1.4 48 28-77 15-66 (68)
127 1wfk_A Zinc finger, FYVE domai 37.6 15 0.0005 28.9 1.9 33 32-64 9-42 (88)
128 1vfy_A Phosphatidylinositol-3- 37.4 15 0.00052 27.6 1.9 32 32-63 11-43 (73)
129 2yt5_A Metal-response element- 35.0 11 0.00037 27.6 0.7 50 30-79 4-62 (66)
130 4gne_A Histone-lysine N-methyl 34.8 14 0.00049 30.2 1.5 51 26-82 9-66 (107)
131 3v43_A Histone acetyltransfera 33.4 11 0.00037 30.7 0.5 44 34-77 63-111 (112)
132 2o35_A Hypothetical protein DU 33.2 15 0.00052 30.1 1.3 13 56-68 42-54 (105)
133 3fyb_A Protein of unknown func 32.7 16 0.00054 29.9 1.3 12 56-67 41-52 (104)
134 2ct7_A Ring finger protein 31; 31.7 6 0.0002 30.8 -1.3 33 35-67 28-63 (86)
135 2fiy_A Protein FDHE homolog; F 31.2 5.7 0.0002 38.5 -1.8 46 30-78 180-231 (309)
136 2ku3_A Bromodomain-containing 31.0 28 0.00097 26.2 2.5 51 27-77 11-65 (71)
137 2jmo_A Parkin; IBR, E3 ligase, 30.4 4.2 0.00014 31.4 -2.4 36 32-67 25-70 (80)
138 1m3v_A FLIN4, fusion of the LI 30.0 32 0.0011 27.9 2.9 51 33-83 33-83 (122)
139 2e6s_A E3 ubiquitin-protein li 30.0 8 0.00027 29.8 -0.8 45 33-77 27-76 (77)
140 2vnf_A ING 4, P29ING4, inhibit 29.1 8 0.00027 28.2 -0.9 46 27-77 5-58 (60)
141 3a1b_A DNA (cytosine-5)-methyl 28.3 24 0.00083 31.0 1.9 45 29-77 76-133 (159)
142 2xjy_A Rhombotin-2; oncoprotei 27.8 43 0.0015 27.0 3.3 50 32-81 29-78 (131)
143 3ask_A E3 ubiquitin-protein li 26.4 13 0.00045 34.5 -0.1 45 33-77 175-224 (226)
144 2kwj_A Zinc finger protein DPF 25.8 30 0.001 28.1 2.0 33 33-65 2-41 (114)
145 2cu8_A Cysteine-rich protein 2 25.6 46 0.0016 24.3 2.8 41 32-82 9-49 (76)
146 2jne_A Hypothetical protein YF 25.3 5.8 0.0002 32.4 -2.4 41 32-80 32-72 (101)
147 3lt7_A Adhesin YADA; adhesion, 25.0 5.2 0.00018 30.2 -2.5 17 308-324 44-60 (64)
148 2jrp_A Putative cytoplasmic pr 25.0 5.7 0.0002 31.3 -2.5 39 33-79 3-41 (81)
149 3asl_A E3 ubiquitin-protein li 24.3 9.4 0.00032 28.8 -1.3 27 51-77 37-68 (70)
150 3c6w_A P28ING5, inhibitor of g 24.0 12 0.0004 27.3 -0.8 45 28-77 5-57 (59)
151 1wev_A Riken cDNA 1110020M19; 23.6 18 0.00062 28.3 0.2 49 31-79 15-73 (88)
152 1x64_A Alpha-actinin-2 associa 23.2 58 0.002 24.6 3.1 40 32-82 25-64 (89)
153 2gmg_A Hypothetical protein PF 23.1 19 0.00065 29.6 0.2 30 47-81 67-96 (105)
154 2l4z_A DNA endonuclease RBBP8, 22.7 38 0.0013 27.7 2.0 39 32-80 61-99 (123)
155 3shb_A E3 ubiquitin-protein li 21.9 11 0.00036 29.2 -1.5 26 52-77 46-76 (77)
156 2co8_A NEDD9 interacting prote 21.5 60 0.002 24.3 2.8 42 32-83 15-56 (82)
157 2xqn_T Testin, TESS; metal-bin 21.2 94 0.0032 24.8 4.2 47 32-82 30-76 (126)
158 2dar_A PDZ and LIM domain prot 20.8 83 0.0029 23.7 3.5 41 31-82 24-64 (90)
159 2k4b_A Transcriptional regulat 20.1 14 0.00047 29.6 -1.2 31 302-332 50-81 (99)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-13 Score=109.57 Aligned_cols=73 Identities=25% Similarity=0.528 Sum_probs=55.3
Q ss_pred CCCCchhhhhhHhhhhcCC--CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 9 GKKPEDHMTSAAAFVEGGI--QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 9 ~~~~~~~~~s~~a~v~g~i--qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
.....+.+..+...+.... ....+..|+||++.|..++.+..++|+|.||..||..|++.+..||+||..+..
T Consensus 15 ~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 15 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3444455555554433322 234578999999999776667788999999999999999999999999998764
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=4.3e-13 Score=101.85 Aligned_cols=56 Identities=29% Similarity=0.727 Sum_probs=48.4
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
....+..|+||++.|.....++.++|+|.||..||..|++.+..||+||..|....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34457899999999976667788999999999999999999999999999987643
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.36 E-value=4.5e-13 Score=104.10 Aligned_cols=54 Identities=22% Similarity=0.764 Sum_probs=47.3
Q ss_pred CCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
..+..|+||++.|.....+.+++|+|.||..||..|++.+..||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 347899999999966556677899999999999999999999999999988654
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.2e-13 Score=101.96 Aligned_cols=54 Identities=31% Similarity=0.864 Sum_probs=46.7
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
...+..|+||++.|.......+++|+|.||..||..|++.+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 344789999999997666667789999999999999999989999999988654
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.34 E-value=5.1e-13 Score=96.95 Aligned_cols=50 Identities=30% Similarity=0.802 Sum_probs=44.1
Q ss_pred CccccccccccccCCCCceeec-ccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~-CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
++.+|+||++.|..++.+..++ |+|.||..||..|++.+..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3679999999997766667776 9999999999999999999999999874
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.9e-13 Score=103.45 Aligned_cols=53 Identities=30% Similarity=0.767 Sum_probs=46.4
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
..++..|+||++.|...+.+..++|+|.||..||..|++.+..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34578999999999765556788999999999999999999999999998865
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=100.44 Aligned_cols=52 Identities=29% Similarity=0.562 Sum_probs=44.6
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
++..|+||++.| .+++.+++|+|.||..||..|++.+..||+||..+...++
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 378999999999 3444556999999999999999999999999999887654
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=1.3e-12 Score=101.46 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=48.7
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhc-CCCCCCCccCCCCCCcchHHHHH
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLE 91 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~kd~~~~~lle 91 (382)
-.++..|+||++.|.+ +++++|||.||..||..|+.. ...||+||..+...+...+..+.
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~ 65 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTH
T ss_pred CcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHH
Confidence 3457899999999933 677899999999999999987 77899999999876655444333
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28 E-value=1.4e-12 Score=99.01 Aligned_cols=57 Identities=30% Similarity=0.623 Sum_probs=47.6
Q ss_pred CCCCccccccccccccC----CCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 28 QDSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~----~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
..+++..|+||++.|.+ ...+++++|+|.||..||..|++.+..||+||..+...+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 44567899999999854 1234788999999999999999999999999999886653
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.27 E-value=2.5e-12 Score=93.10 Aligned_cols=50 Identities=34% Similarity=0.705 Sum_probs=43.3
Q ss_pred CccccccccccccCC-CCceeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 31 CDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 31 ed~~C~ICLe~f~~~-~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
.+..|+||++.|.+. ..+++++|+|.||..||..|++....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 468999999998543 34678899999999999999999999999998874
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.27 E-value=9e-13 Score=107.98 Aligned_cols=59 Identities=27% Similarity=0.693 Sum_probs=48.1
Q ss_pred ccccccccccccCCCCcee-ecccCcccHhhHHHHHhcC-CCCCCCccCCCCCCcchHHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAV 93 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~v-l~CgH~FC~~CI~~Wlq~s-~sCP~CR~~l~~kd~~~~~lle~v 93 (382)
+..|+||++.|. + ++. ++|+|.||..||..|+... ..||+||..+...+......+..+
T Consensus 22 ~~~C~IC~~~~~--~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i 82 (100)
T 3lrq_A 22 VFRCFICMEKLR--D-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEV 82 (100)
T ss_dssp HTBCTTTCSBCS--S-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHH
T ss_pred CCCCccCCcccc--C-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHH
Confidence 689999999993 3 555 9999999999999999987 699999999987666554444443
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.26 E-value=3.9e-12 Score=105.65 Aligned_cols=68 Identities=29% Similarity=0.596 Sum_probs=48.6
Q ss_pred CCchhhhhhHhhhhcCCCCCCccccccccccccCCC---------------CceeecccCcccHhhHHHHHh-----cCC
Q 016793 11 KPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESD---------------PSTVTSCKHEFHLQCVLEWCQ-----RSS 70 (382)
Q Consensus 11 ~~~~~~~s~~a~v~g~iqd~ed~~C~ICLe~f~~~~---------------~~~vl~CgH~FC~~CI~~Wlq-----~s~ 70 (382)
.+++.+..+...+ ....+..|+||++.|.... ...+++|+|.||..||..|+. .+.
T Consensus 8 ~p~~~i~~~~~~~----~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~ 83 (114)
T 1v87_A 8 EPEQVIRKYTEEL----KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSL 83 (114)
T ss_dssp CHHHHHHHHEEEC----SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCC
T ss_pred ChHHHHHHHHHhc----cCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCC
Confidence 3444555544433 3344679999999985421 223789999999999999994 467
Q ss_pred CCCCCccCCCCC
Q 016793 71 QCPMCWQPISLK 82 (382)
Q Consensus 71 sCP~CR~~l~~k 82 (382)
.||+||..+..+
T Consensus 84 ~CP~CR~~~~~~ 95 (114)
T 1v87_A 84 QCPSCKTIYGEK 95 (114)
T ss_dssp BCTTTCCBSSSC
T ss_pred cCCCCCCccCCC
Confidence 899999988653
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.8e-12 Score=98.72 Aligned_cols=49 Identities=33% Similarity=0.708 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
...+..|+||++.|.+ +++++|+|.||..||..|++....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3446899999999933 677899999999999999999999999999986
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.7e-12 Score=96.70 Aligned_cols=52 Identities=31% Similarity=0.659 Sum_probs=43.9
Q ss_pred CCccccccccccccCC----CCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 30 SCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~----~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
..+..|+||++.|.+. ..+++++|+|.||..||..|++.+..||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3478999999998542 223778999999999999999999999999998764
No 15
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.6e-12 Score=104.42 Aligned_cols=59 Identities=24% Similarity=0.631 Sum_probs=48.4
Q ss_pred ccccccccccccCCCCceee-cccCcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl-~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~v 93 (382)
+..|+||++.|. + ++.+ +|||.||..||..|+..+..||+||..+...+...+..+..+
T Consensus 22 ~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ 81 (99)
T 2y43_A 22 LLRCGICFEYFN--I-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDEL 81 (99)
T ss_dssp HTBCTTTCSBCS--S-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHH
T ss_pred CCCcccCChhhC--C-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHH
Confidence 679999999993 3 4554 999999999999999998999999999987666655555443
No 16
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.3e-12 Score=100.96 Aligned_cols=54 Identities=30% Similarity=0.711 Sum_probs=42.8
Q ss_pred CCCccccccccccccC-----------CCCc-eeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 29 DSCDDACSICLEEFSE-----------SDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~-----------~~~~-~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
+.+++.|+||++.|.. ++.+ .+++|+|.||..||.+|++.+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 3456789999998843 2223 4456999999999999999999999999988654
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4e-12 Score=97.40 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
..++..|+||++.|.+ ++.++|+|.||..||..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3457899999999833 6778999999999999999999999999999864
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.22 E-value=4.9e-12 Score=95.55 Aligned_cols=49 Identities=33% Similarity=0.855 Sum_probs=43.3
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
.+..|+||++.+ .+++..++|+|.||..||..|++.+..||+||..+..
T Consensus 4 ~~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 467999999998 4456788999999999999999999999999998764
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.22 E-value=3.7e-12 Score=109.99 Aligned_cols=49 Identities=37% Similarity=0.839 Sum_probs=43.7
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
+..|+||++.|.+ +++++|||.||..||..|+..+..||+||..+....
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 6789999999943 677899999999999999999999999999987654
No 20
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.21 E-value=4.6e-12 Score=93.99 Aligned_cols=54 Identities=30% Similarity=0.623 Sum_probs=45.4
Q ss_pred CccccccccccccCC----CCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 31 CDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 31 ed~~C~ICLe~f~~~----~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
++.+|+||++.|... ..+.+++|+|.||..||..|++.+..||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 367999999998531 234788999999999999999999999999999876653
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.6e-12 Score=95.32 Aligned_cols=50 Identities=24% Similarity=0.660 Sum_probs=42.7
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHh---cCCCCCCCccCCCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQPISLKD 83 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq---~s~sCP~CR~~l~~kd 83 (382)
++..|+||++.|.+ +++++|+|.||..||..|++ ....||+||..+...+
T Consensus 19 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 47899999999843 67779999999999999997 3568999999987654
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=98.95 Aligned_cols=60 Identities=23% Similarity=0.475 Sum_probs=46.2
Q ss_pred CccccccccccccCCCCceeec-ccCcccHhhHHHHHhcC--CCCCCCccCC-CCCCcchHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPI-SLKDATSQELLEAV 93 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~-CgH~FC~~CI~~Wlq~s--~sCP~CR~~l-~~kd~~~~~lle~v 93 (382)
++..|+||++.|. + +++++ |||.||..||..|+... ..||+||..+ ...++..+..+..+
T Consensus 12 ~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~ 75 (92)
T 3ztg_A 12 DELLCLICKDIMT--D-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQA 75 (92)
T ss_dssp TTTEETTTTEECS--S-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHH
T ss_pred cCCCCCCCChhhc--C-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHH
Confidence 4789999999993 3 56678 99999999999999753 5899999997 44455555444443
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=97.92 Aligned_cols=53 Identities=26% Similarity=0.595 Sum_probs=44.6
Q ss_pred CccccccccccccCCCC-ceeecccCcccHhhHHHHHhcC---CCCCCCccCCCCCC
Q 016793 31 CDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKD 83 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~-~~vl~CgH~FC~~CI~~Wlq~s---~sCP~CR~~l~~kd 83 (382)
++..|+||++.|.+.+. +++++|+|.||..||..|++.. ..||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 36899999999955433 7788999999999999999875 78999999887653
No 24
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=104.85 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=48.3
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcC-CCCCCCccCCCC-CCcchHHHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL-KDATSQELLEAVE 94 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s-~sCP~CR~~l~~-kd~~~~~lle~ve 94 (382)
+..|+||++.|.+ ++.++|||.||..||..|+... ..||+||..+.. .++..+..+..+.
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i 113 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVL 113 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHH
T ss_pred CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHH
Confidence 6799999999943 6778999999999999999854 489999999987 5555555555444
No 25
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.19 E-value=9.9e-12 Score=102.64 Aligned_cols=49 Identities=27% Similarity=0.662 Sum_probs=42.4
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
+..|+||++.|. +++++++|||.||..||..|+.....||+||..+...
T Consensus 15 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 689999999993 3333349999999999999999999999999998865
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.19 E-value=9.6e-12 Score=96.25 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=41.8
Q ss_pred CccccccccccccCCCCceeec-ccCcccHhhHHHHHhcC--CCCCCCccCCCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~-CgH~FC~~CI~~Wlq~s--~sCP~CR~~l~~kd 83 (382)
++..|+||++.|. + +++++ |+|.||..||..|++.. ..||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMT--D-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCT--T-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHh--C-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 4789999999993 3 56678 99999999999999865 68999999866544
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=93.36 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=42.1
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHh-cCCCCCCCccCCCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKD 83 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq-~s~sCP~CR~~l~~kd 83 (382)
++..|+||++.+.+ ++.++|+|.||..||..|+. ....||+||..+..++
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 36899999999933 45579999999999999995 5678999999987654
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=1.6e-11 Score=95.75 Aligned_cols=50 Identities=28% Similarity=0.708 Sum_probs=42.7
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhc------CCCCCCCccCCCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKD 83 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~------s~sCP~CR~~l~~kd 83 (382)
++..|+||++.|.+ +++++|+|.||..||..|+.. ...||+||..+...+
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 36899999999933 567899999999999999987 668999999987654
No 29
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.16 E-value=1.5e-11 Score=102.70 Aligned_cols=52 Identities=23% Similarity=0.611 Sum_probs=43.6
Q ss_pred CCccccccccccccCC---------------CCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 30 SCDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~---------------~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
.+++.|+||++.|... ..+.+++|+|.||..||..|+..+.+||+||..+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 3578999999998532 124668999999999999999999999999998754
No 30
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.16 E-value=2e-11 Score=97.58 Aligned_cols=60 Identities=8% Similarity=-0.044 Sum_probs=51.1
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~v 93 (382)
++..|+||++.|.+ +++++|||.||..||..|+.....||+|+.++...++..+..+...
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~ 72 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQ 72 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred hheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHH
Confidence 37899999999944 7778999999999999999988899999999988777666555443
No 31
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=7.8e-12 Score=95.10 Aligned_cols=50 Identities=24% Similarity=0.820 Sum_probs=43.8
Q ss_pred CCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
.++..|+||++.+.+ ++++|+|.||..||..|+.....||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 346899999999833 77899999999999999999999999999987654
No 32
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=106.19 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=49.9
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCC-CCCCCccCCCCC-CcchHHHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLK-DATSQELLEAVEQ 95 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~-sCP~CR~~l~~k-d~~~~~lle~ve~ 95 (382)
++..|+||++.|.+ +++++|+|.||..||..|+.... .||+||..+... .+..+..+..+..
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~ 140 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLD 140 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHH
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 36799999999943 67789999999999999998754 899999999877 5555555555443
No 33
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.14 E-value=4.2e-11 Score=98.81 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=53.4
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE 96 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~ve~e 96 (382)
++..|+||++.|.+ +++++|||.||..||..|+.....||+|+.++...++.++..+......
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~ 90 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQA 90 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHH
T ss_pred HhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHH
Confidence 47899999999944 6778999999999999999988899999999998888777666554433
No 34
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.14 E-value=3.3e-11 Score=99.09 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=53.4
Q ss_pred CccccccccccccCCCCceeeccc-CcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE 96 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~Cg-H~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~ve~e 96 (382)
++..|+||++.|.+ +++++|| |.||..||..|+.....||+|+.++...++..+..+......
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~ 84 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQR 84 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHH
T ss_pred HhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHH
Confidence 37899999999944 7778999 999999999999988899999999998888777666554443
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.1e-11 Score=95.03 Aligned_cols=50 Identities=26% Similarity=0.642 Sum_probs=42.8
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhc------CCCCCCCccCCCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKD 83 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~------s~sCP~CR~~l~~kd 83 (382)
++..|+||++.|.+ +++++|+|.||..||..|+.. ...||+||..+...+
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 36899999999933 566799999999999999987 678999999987654
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=7.1e-12 Score=97.08 Aligned_cols=50 Identities=28% Similarity=0.610 Sum_probs=42.4
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhc-------CCCCCCCccCCCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-------SSQCPMCWQPISLKD 83 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-------s~sCP~CR~~l~~kd 83 (382)
++..|+||++.|.+ +++++|+|.||..||..|+.. ...||+||..+...+
T Consensus 11 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 11 EEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 37899999999933 566799999999999999986 568999999987653
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.10 E-value=2.6e-11 Score=107.28 Aligned_cols=60 Identities=23% Similarity=0.619 Sum_probs=45.6
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc-CCCCCCCccCCCCC-CcchHHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK-DATSQELLEAV 93 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~k-d~~~~~lle~v 93 (382)
+..|+||++.|. +++.+++|+|.||..||..|+.. ...||+||..+... .+..+..+..+
T Consensus 54 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~ 115 (165)
T 2ckl_B 54 ELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDAL 115 (165)
T ss_dssp HHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHH
T ss_pred CCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHH
Confidence 569999999993 34444599999999999999987 77899999998643 33344444443
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.1e-11 Score=88.44 Aligned_cols=42 Identities=29% Similarity=0.800 Sum_probs=36.2
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHh---cCCCCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq---~s~sCP~C 75 (382)
++..|+||++.|.+ +++++|+|.||..||..|++ ....||+|
T Consensus 19 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 47899999999943 56779999999999999998 45689998
No 39
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=3.9e-11 Score=100.62 Aligned_cols=56 Identities=25% Similarity=0.605 Sum_probs=45.9
Q ss_pred ccccccccccccCCCCceee-cccCcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl-~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~ 92 (382)
+..|+||++.| .+ ++++ +|||.||..||..|+. ..||+||..+...++..+..+..
T Consensus 22 ~~~C~IC~~~~--~~-pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~ 78 (117)
T 1jm7_B 22 LLRCSRCTNIL--RE-PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDS 78 (117)
T ss_dssp TTSCSSSCSCC--SS-CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHH
T ss_pred CCCCCCCChHh--hC-ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHH
Confidence 68999999999 33 4555 9999999999999998 78999999997776665554443
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=2.9e-11 Score=99.61 Aligned_cols=49 Identities=37% Similarity=0.729 Sum_probs=41.5
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcC---CCCCCCccCCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKD 83 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s---~sCP~CR~~l~~kd 83 (382)
+..|+||++.|.+ ++.++|||.||..||..|+... ..||+||..+...+
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 5799999999833 5667999999999999999865 48999999987654
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=8.9e-11 Score=88.20 Aligned_cols=54 Identities=24% Similarity=0.535 Sum_probs=42.2
Q ss_pred Cccccccccc-cccCCCC-ceeecccCcccHhhHHHHHhc-CCCCCCCccCCCCCCc
Q 016793 31 CDDACSICLE-EFSESDP-STVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (382)
Q Consensus 31 ed~~C~ICLe-~f~~~~~-~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~kd~ 84 (382)
++..|+||++ .|..... ..+++|||.||..||..|+.. ...||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3679999999 7743211 246899999999999999765 4679999999876653
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=8.3e-11 Score=98.68 Aligned_cols=54 Identities=31% Similarity=0.653 Sum_probs=45.6
Q ss_pred CCccccccccccccCC----CCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 30 SCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~----~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
.++.+|+||++.|.+. ..+++++|||.||..||.+|++.+..||+||+.+...+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3478999999999541 22388999999999999999999999999999987654
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.04 E-value=8.4e-11 Score=98.73 Aligned_cols=61 Identities=20% Similarity=0.449 Sum_probs=48.8
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCC-CCCCCccCCCCCCcchHHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLKDATSQELLEAVE 94 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~-sCP~CR~~l~~kd~~~~~lle~ve 94 (382)
++..|+||++.|.+ ++.++|+|.||..||..|+.... .||+||..+...+......+....
T Consensus 17 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i 78 (118)
T 3hct_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (118)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHH
Confidence 36899999999933 57789999999999999998765 899999999876655544444443
No 44
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.02 E-value=3.2e-11 Score=102.67 Aligned_cols=52 Identities=23% Similarity=0.649 Sum_probs=1.5
Q ss_pred CCccccccccccccCC-------------C--CceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 30 SCDDACSICLEEFSES-------------D--PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~-------------~--~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
..++.|+||++.|... + .+..++|+|.||..||..|++.+..||+||..+..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3467999999999531 1 23346999999999999999999999999998754
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.02 E-value=4e-11 Score=99.93 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCCceeecccCcccHhhHHHHHhc-CCCCCCCccCCCC
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~ 81 (382)
.++..|+||++.|.+ ++.++|+|.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 347899999999933 667799999999999999976 6789999999863
No 46
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=84.38 Aligned_cols=42 Identities=36% Similarity=1.024 Sum_probs=35.5
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHh---cCCCCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq---~s~sCP~C 75 (382)
++..|+||++.|.+ +++++|+|.||..||..|+. ....||+|
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 36899999999943 56689999999999999954 46789998
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=2.5e-10 Score=107.04 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=52.7
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcC-CCCCCCccCCCCCCcchHHHHHHHHH
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQ 95 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s-~sCP~CR~~l~~kd~~~~~lle~ve~ 95 (382)
....+..|+||++.|.+ |++++|||.||..||..|+... ..||+|+.++...++.++..+.....
T Consensus 204 ~~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~ 269 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVID 269 (281)
T ss_dssp CCCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHH
T ss_pred CCCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHH
Confidence 34458999999999944 7778999999999999999864 45999999998877777766665443
No 48
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.3e-10 Score=90.96 Aligned_cols=54 Identities=30% Similarity=0.689 Sum_probs=44.1
Q ss_pred CCCCccccccccccccCCCCceeeccc-----CcccHhhHHHHHhcC--CCCCCCccCCCCC
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~Cg-----H~FC~~CI~~Wlq~s--~sCP~CR~~l~~k 82 (382)
...++..|.||++.|..++. .+++|. |.||..||.+|+..+ ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34457899999999865554 468996 999999999999865 4899999998754
No 49
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=3e-10 Score=92.15 Aligned_cols=63 Identities=21% Similarity=0.440 Sum_probs=49.8
Q ss_pred CccccccccccccCCCCceeec-ccCcccHhhHHHHHhcC------CCCCC--CccC-CCCCCcchHHHHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS------SQCPM--CWQP-ISLKDATSQELLEAVEQE 96 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~-CgH~FC~~CI~~Wlq~s------~sCP~--CR~~-l~~kd~~~~~lle~ve~e 96 (382)
.+..|+||++.|.+ +++++ |||.||..||..|+... ..||+ |+.. +...++..+..+......
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~ 78 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIEN 78 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHH
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHH
Confidence 47899999999943 66664 99999999999999753 48999 9877 777777777666655443
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.95 E-value=2.6e-10 Score=95.13 Aligned_cols=50 Identities=34% Similarity=0.642 Sum_probs=43.5
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc-CCCCCCCccCCCCCCc
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~kd~ 84 (382)
+..|+||++.|.+ ++.++|||.||..||..|+.. ...||+||..+...+.
T Consensus 23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 6899999999933 666899999999999999987 6789999999887553
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=5.3e-10 Score=88.33 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=41.5
Q ss_pred CCccccccccccccCCCCceee--cccCcccHhhHHHHHhc-CCCCCCCccCCCCCC
Q 016793 30 SCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl--~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~kd 83 (382)
.++.+|+||++.+...+ +.++ +|||.||..||..|+.. ...||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34789999999985422 3444 49999999999999854 578999999987654
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.90 E-value=4.8e-10 Score=93.97 Aligned_cols=56 Identities=30% Similarity=0.630 Sum_probs=46.7
Q ss_pred CCCccccccccccccC----CCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 29 DSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~----~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
+..+..|+||++.|.. ...++.++|+|.||..||.+|++..+.||+||..+..++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 4557899999999853 1223778999999999999999999999999999876543
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.88 E-value=3.4e-10 Score=98.65 Aligned_cols=48 Identities=17% Similarity=0.409 Sum_probs=41.1
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCC-CCCCCccCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISL 81 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~-sCP~CR~~l~~ 81 (382)
++..|+||++.|.+ ++.++|||.||..||..|+.... .||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 37899999999933 57789999999999999998654 89999998654
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=4.4e-10 Score=82.69 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=40.5
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
+.++..|+||++.|.+ +++++|+|.||..||..| ...||+||+.+...+
T Consensus 3 e~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp SCCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4557899999999943 577899999999999874 568999999987653
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.86 E-value=1.5e-09 Score=82.15 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=41.2
Q ss_pred CCccccccccccccCCCCceee--cccCc-ccHhhHHHHHhcCCCCCCCccCCC
Q 016793 30 SCDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl--~CgH~-FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
.++..|.||++.+.+ +.++ +|||. ||..|+..|++.+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 457899999999833 4555 99999 899999999998899999999885
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.84 E-value=1.7e-09 Score=98.25 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCccccccccccccCCCCceeecccCcccHhhHHHHHhcC-CCCCCCccCCCCCCcchHHHHHHHHH
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQ 95 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s-~sCP~CR~~l~~kd~~~~~lle~ve~ 95 (382)
..+..||||++.|.+ |++++|||.||..||..|+... .+||+|+.++...++.++..+.....
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie 167 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVID 167 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHH
Confidence 457999999999944 7778999999999999999864 46999999998888777766655443
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=3.6e-09 Score=83.09 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=42.2
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcC--CCCCCCccCCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s--~sCP~CR~~l~~kd 83 (382)
...|.||++.|..+ .....|+|.||..||.+||+.+ .+||+||..+...+
T Consensus 15 i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 46899999999654 3445899999999999999877 78999999887553
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.80 E-value=2e-09 Score=95.35 Aligned_cols=61 Identities=20% Similarity=0.445 Sum_probs=48.2
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcC-CCCCCCccCCCCCCcchHHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVE 94 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s-~sCP~CR~~l~~kd~~~~~lle~ve 94 (382)
++..|+||++.|.+ ++.++|||.||..||..|+... ..||+||..+...+......+....
T Consensus 17 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i 78 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (170)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHH
Confidence 37899999999933 5778999999999999999764 4899999999876554444444433
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.77 E-value=3.8e-09 Score=79.71 Aligned_cols=47 Identities=19% Similarity=0.490 Sum_probs=40.2
Q ss_pred CccccccccccccCCCCceee--cccCc-ccHhhHHHHHhcCCCCCCCccCCC
Q 016793 31 CDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl--~CgH~-FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
.+..|.||++.+.+ +.++ +|||. ||..|+..|.+....||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 46799999998733 4455 99998 999999999988889999999885
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=4.1e-09 Score=106.03 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=42.2
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHh-cCCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq-~s~sCP~CR~~l~~k 82 (382)
+..|+||++.+.+ ++.++|||.||..||..|+. ....||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4799999999833 78889999999999999998 678999999988754
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.75 E-value=1.8e-09 Score=83.78 Aligned_cols=43 Identities=28% Similarity=0.716 Sum_probs=37.8
Q ss_pred ccccccccccccCCCCceeecccCc-ccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~-FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
+..|+||++.+.+ ++.++|+|. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 5799999999833 677899999 999999998 889999998864
No 62
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.7e-09 Score=102.10 Aligned_cols=61 Identities=23% Similarity=0.515 Sum_probs=50.1
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcC--CCCCC--CccCCCCCCcchHHHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPM--CWQPISLKDATSQELLEAV 93 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s--~sCP~--CR~~l~~kd~~~~~lle~v 93 (382)
.+..||||++.| .+|++.+.|||.||..||..|+... ..||+ |++.+...++.++..+..+
T Consensus 180 ~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~l 244 (267)
T 3htk_C 180 IELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELR 244 (267)
T ss_dssp CCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred eeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHH
Confidence 478999999999 5555556999999999999999764 46999 9999988888777665543
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.2e-08 Score=79.11 Aligned_cols=44 Identities=30% Similarity=0.736 Sum_probs=36.7
Q ss_pred ccccccccccccCCCCceeecccCc-ccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~-FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
+..|+||++.+.+ +++++|+|. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 5789999999833 677899999 99999964 37899999988653
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=6.9e-08 Score=73.98 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=38.8
Q ss_pred CCCCccccccccccccCCCCceeecccCc-ccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~-FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
.+.++..|.||++.+. .+++++|+|. ||..|+.. ...||+||..|..
T Consensus 11 ~~~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3445789999999973 3788899999 99999984 4789999998865
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.47 E-value=5.5e-08 Score=73.27 Aligned_cols=50 Identities=12% Similarity=0.291 Sum_probs=43.0
Q ss_pred ccccccccccccCCCCceee-cccCcccHhhHHHHHhcCCCCCCCccCCCCCCc
Q 016793 32 DDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl-~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~ 84 (382)
...|+||++.+.+ ++++ +|||.|+..||.+|++.+..||++++++...++
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 4689999999943 6776 999999999999999888889999999987654
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.46 E-value=3.2e-08 Score=77.99 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=36.9
Q ss_pred ccccccccccccCCCCceeecccCc-ccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~-FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
+..|+||++.+.+ ++.++|||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 5799999999833 678899999 999999877 389999998864
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=6.1e-08 Score=77.99 Aligned_cols=48 Identities=23% Similarity=0.654 Sum_probs=36.8
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhc--------CCCCCC--CccC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPM--CWQP 78 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~--------s~sCP~--CR~~ 78 (382)
.+.+|+||++.+.......+++|+|.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46799999999844222233479999999999999863 136999 9988
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.35 E-value=8.8e-08 Score=94.89 Aligned_cols=53 Identities=26% Similarity=0.595 Sum_probs=40.5
Q ss_pred CCCccccccccccccCCC-Cce----eecccCcccHhhHHHHHhcC-----------CCCCCCccCCCC
Q 016793 29 DSCDDACSICLEEFSESD-PST----VTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISL 81 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~-~~~----vl~CgH~FC~~CI~~Wlq~s-----------~sCP~CR~~l~~ 81 (382)
++...+|+||++.+.++. -+. -+.|+|.||..||.+|++.. ..||+||+++..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345779999999986522 221 24899999999999999752 359999998864
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.32 E-value=1.1e-07 Score=94.21 Aligned_cols=43 Identities=21% Similarity=0.623 Sum_probs=37.7
Q ss_pred ccccccccccccCCCCceeecccCc-ccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~-FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
+..|+||++.+.+ ++.++|||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 6799999999833 677899999 999999988 789999998864
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.30 E-value=4.3e-07 Score=68.21 Aligned_cols=51 Identities=24% Similarity=0.570 Sum_probs=39.9
Q ss_pred CCCCccccccccccccCCCCceeeccc--C---cccHhhHHHHHhc--CCCCCCCccCCCC
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCK--H---EFHLQCVLEWCQR--SSQCPMCWQPISL 81 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~Cg--H---~FC~~CI~~Wlq~--s~sCP~CR~~l~~ 81 (382)
+++++..|.||++.. +++ .++||. + .||..||.+|+.. +..||+|+..+..
T Consensus 2 e~~~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TTCSCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 455678999999985 333 457865 4 9999999999974 5789999998764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.95 E-value=4e-06 Score=69.25 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=38.7
Q ss_pred ccccccccccCCCCceeecccCcccHhhHHHHHhc-CCCCCCCccCCCC
Q 016793 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (382)
Q Consensus 34 ~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-s~sCP~CR~~l~~ 81 (382)
.|++|--.+ ....++.||+|.||..|+..|.+. .+.||.|+.++.-
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 588898887 334678899999999999999865 6889999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.52 E-value=5.5e-05 Score=71.27 Aligned_cols=51 Identities=24% Similarity=0.569 Sum_probs=41.5
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcC--CCCCCCccCCCCCCc
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKDA 84 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s--~sCP~CR~~l~~kd~ 84 (382)
-..|.||.+.+..+ .....|+|.||..|+..|++.. ..||.|+..+....+
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 57899999998543 4555699999999999999865 489999998876543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.41 E-value=0.0057 Score=49.91 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=38.2
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
-..|-.|+-..+ --+.-..|.+|..||...+..+..||+|+.+|..+
T Consensus 28 ~~nCKsCWf~~k----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccChhhccccC----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 357999998862 23434469999999999999999999999998765
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.34 E-value=0.0085 Score=48.03 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=26.0
Q ss_pred CccccccccccccCCCCcee--ecccCcccHhhHHHHH
Q 016793 31 CDDACSICLEEFSESDPSTV--TSCKHEFHLQCVLEWC 66 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~v--l~CgH~FC~~CI~~Wl 66 (382)
++..|+||++.+. .+++. +.|+|.||..|+..|.
T Consensus 2 ee~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHHh
Confidence 4689999998642 22333 8999999999999843
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.08 E-value=0.14 Score=38.70 Aligned_cols=54 Identities=22% Similarity=0.485 Sum_probs=37.8
Q ss_pred hhcCCCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhcC----CCCCCCccCC
Q 016793 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (382)
Q Consensus 23 v~g~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s----~sCP~CR~~l 79 (382)
++++.....+..|.||.+. ++-+..-.|...||..|+...+... -.||.|....
T Consensus 3 ~E~~~~~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 3 MEGQQNLAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTTTCCCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred cccccCCCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4444455556789999864 3334445788999999998877653 3699997543
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.64 E-value=0.27 Score=54.52 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=50.5
Q ss_pred CCccccccccccccCCCCceeeccc-CcccHhhHHHHHhcCCCCCCCccCCCCCCcchHHHHHHH
Q 016793 30 SCDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl~Cg-H~FC~~CI~~Wlq~s~sCP~CR~~l~~kd~~~~~lle~v 93 (382)
.++..|||-++.+.+ |++++.| +.|-..+|.+|+..+.+||+=|.++...+..++..+...
T Consensus 889 P~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~ 950 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQK 950 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHH
T ss_pred cHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHH
Confidence 447889999999944 7778887 699999999999999999999999998877766555443
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=85.49 E-value=0.48 Score=47.23 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=44.3
Q ss_pred ccccccccccccCCCCceeecccCcccHhh--HHHHHhc--CCCCCCCccCCCCCCcchHHHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQC--VLEWCQR--SSQCPMCWQPISLKDATSQELLEAVE 94 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~C--I~~Wlq~--s~sCP~CR~~l~~kd~~~~~lle~ve 94 (382)
.+.|||-+..+ ..+++-..|.|.-|++- +..+..+ .-.||+|.+.+...++.....+..+.
T Consensus 249 SL~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL 313 (371)
T 3i2d_A 249 SLQCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDIL 313 (371)
T ss_dssp ESBCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHH
T ss_pred eecCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHH
Confidence 46799888887 56677889999977664 3333333 34699999999998888777666554
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=83.71 E-value=0.74 Score=45.72 Aligned_cols=61 Identities=15% Similarity=0.334 Sum_probs=43.9
Q ss_pred ccccccccccccCCCCceeecccCcccHhh--HHHHHhc--CCCCCCCccCCCCCCcchHHHHHHHH
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQC--VLEWCQR--SSQCPMCWQPISLKDATSQELLEAVE 94 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~C--I~~Wlq~--s~sCP~CR~~l~~kd~~~~~lle~ve 94 (382)
.+.|||-+..+ ..+.+...|.|.-|++- +..+..+ .-.||+|.+.+...++.....+..+.
T Consensus 215 SL~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL 279 (360)
T 4fo9_A 215 SLMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL 279 (360)
T ss_dssp ESBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHH
T ss_pred eeeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHH
Confidence 45799888887 56677889999966553 3333333 34699999999998888777766654
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=80.45 E-value=0.66 Score=34.23 Aligned_cols=49 Identities=18% Similarity=0.565 Sum_probs=34.0
Q ss_pred CCCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCcc
Q 016793 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (382)
Q Consensus 26 ~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~ 77 (382)
.+.+..+..|.||... ++-+..-.|...||..|+..-+.. .-.||.|..
T Consensus 5 ~~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 5 SYETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cccCCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4456678899999874 222333577889999999875433 336999964
No 80
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=79.16 E-value=1.9 Score=34.24 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=27.9
Q ss_pred CCccccccccccccCCCCceee-cccCcccHhhHHHHHhc
Q 016793 30 SCDDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQR 68 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl-~CgH~FC~~CI~~Wlq~ 68 (382)
...+.|.+|.+.+.+..-+... .=.|.||+.|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4468999999999653222221 12599999999999875
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.79 E-value=0.32 Score=35.97 Aligned_cols=50 Identities=22% Similarity=0.481 Sum_probs=33.2
Q ss_pred CCCccccccccccccCCCCc-eeecccCcccHhhHHHHHh-----cCCCCCCCccC
Q 016793 29 DSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQP 78 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~Wlq-----~s~sCP~CR~~ 78 (382)
+.++..|+||...+.+.... ..-.|...||..|+.--.. ....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 34577899999887433322 2357888999999754322 34679999653
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=74.82 E-value=0.7 Score=41.01 Aligned_cols=46 Identities=22% Similarity=0.535 Sum_probs=32.8
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCccCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPI 79 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~~l 79 (382)
.+..|.||.+. ++-+..-.|...||..|+...+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999865 333344568889999998766543 23699997654
No 83
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=73.76 E-value=0.49 Score=35.43 Aligned_cols=51 Identities=24% Similarity=0.655 Sum_probs=34.5
Q ss_pred cCCCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCccC
Q 016793 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (382)
Q Consensus 25 g~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~~ 78 (382)
|+..+..+..|.||.+. ++-+..-.|...||..|+..-+.. .-.||.|...
T Consensus 1 ~~~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 1 GAMAQKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCCCSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCcCCCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 34556678999999975 233344578889999998754432 2359998543
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.24 E-value=1.4 Score=35.22 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=36.2
Q ss_pred cCCCCCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCccCCC
Q 016793 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPIS 80 (382)
Q Consensus 25 g~iqd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~~l~ 80 (382)
....+..+..|.||... ++-+..-.|.-.||..|+..=+.. .-.||.|...-.
T Consensus 18 ~~~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp CCSSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred ccccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 34456678899999975 333344567789999999765543 236999976433
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.04 E-value=1.2 Score=36.31 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=32.4
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCc
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCW 76 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR 76 (382)
.+..+..|.||.+.-...+-+.-..|...||..||...+.. .-.||.|+
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 44568899999887321112444688999999999876642 23466653
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=71.71 E-value=0.85 Score=33.63 Aligned_cols=47 Identities=21% Similarity=0.578 Sum_probs=32.3
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCccC
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~~ 78 (382)
+..+..|.||.+. ++-+..-.|...||..|+..-+.. .-.||.|...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4557889999864 232334568889999999754433 2359999654
No 87
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=71.15 E-value=0.61 Score=42.25 Aligned_cols=48 Identities=25% Similarity=0.527 Sum_probs=33.0
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCccCC
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPI 79 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~~l 79 (382)
+..+..|.||... ++-+..-.|...||..|+...+.. .-.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4557889999865 221233467889999998776543 23699997653
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=70.96 E-value=0.83 Score=34.70 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=32.0
Q ss_pred CCccccccccccccCCCCc-eeecccCcccHhhHHHHHh----cCCCCCCCccCC
Q 016793 30 SCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ----RSSQCPMCWQPI 79 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~Wlq----~s~sCP~CR~~l 79 (382)
.+...|.||..... +..+ ..-.|...||..|+..-.. ....||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34567999987752 2222 2346888999999865443 245699997654
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=70.12 E-value=3.7 Score=32.81 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=23.1
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHH
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~W 65 (382)
.|..|.||-..- ...-.-.--|+-+||..||.+.
T Consensus 14 ~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 488999997432 1111222357899999999996
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=66.51 E-value=8.7 Score=30.92 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=37.6
Q ss_pred CCCCCccccccccccccCCCC----ceeecccCcccHhhHHHHHh-cCCCCCCCccCCC
Q 016793 27 IQDSCDDACSICLEEFSESDP----STVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPIS 80 (382)
Q Consensus 27 iqd~ed~~C~ICLe~f~~~~~----~~vl~CgH~FC~~CI~~Wlq-~s~sCP~CR~~l~ 80 (382)
+.......|.||-+.+..... +..-.|.--.|..|+.-=.+ .+..||-|+..+.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 344445799999999742221 23357888899999865444 5678999988775
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=65.96 E-value=4.7 Score=34.92 Aligned_cols=47 Identities=23% Similarity=0.511 Sum_probs=33.0
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHh-----------cCCCCCCCcc
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-----------RSSQCPMCWQ 77 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq-----------~s~sCP~CR~ 77 (382)
+|..++.|.||.+-- +-.-.-.|-..||..||..-+. ..-.||.|..
T Consensus 59 ~Dg~~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 355688999999862 2233347788999999996552 1236999964
No 92
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=63.64 E-value=1.9 Score=34.77 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=28.7
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhc---CCCCCCCcc
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQ 77 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~---s~sCP~CR~ 77 (382)
+...| ||-.....+.-+..-.|.-.||..|+..-+.. ...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 89776533221233578889999998643222 357999964
No 93
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=62.46 E-value=1.8 Score=38.99 Aligned_cols=48 Identities=17% Similarity=0.380 Sum_probs=32.9
Q ss_pred cccccccccccCCCC---c-eeecccCcccHhhHHH------HHh-----cCCCCCCCccCCC
Q 016793 33 DACSICLEEFSESDP---S-TVTSCKHEFHLQCVLE------WCQ-----RSSQCPMCWQPIS 80 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~---~-~vl~CgH~FC~~CI~~------Wlq-----~s~sCP~CR~~l~ 80 (382)
..|+||...+.+++. . ..-.|...||..|+.- -+. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 479999999865442 2 2357889999999632 111 1578999987543
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.84 E-value=4.6 Score=32.34 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=31.1
Q ss_pred hcCCCCCCccccccccccccCCCCceeec--cc-CcccHhhHHHHHhc----CCCCCCCccCC
Q 016793 24 EGGIQDSCDDACSICLEEFSESDPSTVTS--CK-HEFHLQCVLEWCQR----SSQCPMCWQPI 79 (382)
Q Consensus 24 ~g~iqd~ed~~C~ICLe~f~~~~~~~vl~--Cg-H~FC~~CI~~Wlq~----s~sCP~CR~~l 79 (382)
...++..+..-| ||..... +.-+..-. |. ..||..|+. +.. ...||.|+...
T Consensus 28 ~~~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 28 DMPVDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCCSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cCCcCCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 334455556677 9998652 21111223 55 689999986 332 45799997643
No 95
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.00 E-value=3.5 Score=28.78 Aligned_cols=44 Identities=25% Similarity=0.587 Sum_probs=27.9
Q ss_pred ccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCcc
Q 016793 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (382)
Q Consensus 34 ~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~ 77 (382)
.|.||...-..++-+.--.|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888865322222333578889999999654432 235999964
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.04 E-value=0.85 Score=32.91 Aligned_cols=45 Identities=24% Similarity=0.589 Sum_probs=30.1
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCc
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCW 76 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR 76 (382)
+..+..|.||... ++-+..-.|...||..|+..-+.. .-.||.|.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3457889999975 233344578889999998754433 22477774
No 97
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=59.69 E-value=1.5 Score=38.36 Aligned_cols=51 Identities=24% Similarity=0.392 Sum_probs=30.5
Q ss_pred CCCCCCccccccccccccCCCC-ceeecccCcccHhhHHHHH-----hcCCCCCCCcc
Q 016793 26 GIQDSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWC-----QRSSQCPMCWQ 77 (382)
Q Consensus 26 ~iqd~ed~~C~ICLe~f~~~~~-~~vl~CgH~FC~~CI~~Wl-----q~s~sCP~CR~ 77 (382)
.+.+.+...| ||......... +..-.|...||..|+.--. .....||.|+.
T Consensus 2 ~~~~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 2 PLGSDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -----CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCCCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 3455667889 99987632222 2234778899999984221 23467999965
No 98
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.40 E-value=5.1 Score=30.48 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=26.9
Q ss_pred CCCCCccccccccccccCCCCceeecc-cCcccHhhHHHH
Q 016793 27 IQDSCDDACSICLEEFSESDPSTVTSC-KHEFHLQCVLEW 65 (382)
Q Consensus 27 iqd~ed~~C~ICLe~f~~~~~~~vl~C-gH~FC~~CI~~W 65 (382)
..+++..-|.||.++- ..+.+.| +-.||..|..+.
T Consensus 3 ~~~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 3 SGSSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SSCCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CcCcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 3456677899999984 2577889 789999997664
No 99
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.08 E-value=1.9 Score=33.18 Aligned_cols=54 Identities=22% Similarity=0.395 Sum_probs=33.8
Q ss_pred hhcCCCCCCccccccccccccCCCCce-ee--cccCcccHhhHHHHHh---------cCCCCCCCccC
Q 016793 23 VEGGIQDSCDDACSICLEEFSESDPST-VT--SCKHEFHLQCVLEWCQ---------RSSQCPMCWQP 78 (382)
Q Consensus 23 v~g~iqd~ed~~C~ICLe~f~~~~~~~-vl--~CgH~FC~~CI~~Wlq---------~s~sCP~CR~~ 78 (382)
++..++..+...| ||-..... ..++ .- .|...||..|+.---. ....||.|+..
T Consensus 7 ~dd~~~~~~~~~C-iC~~~~~~-g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 7 GEDPFQPEIKVRC-VCGNSLET-DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCSSSCCCCCCC-SSCCCCCC-SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred cccccCCCCCEEe-ECCCcCCC-CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3444555567788 89887422 2222 23 6889999999853221 25679999654
No 100
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.08 E-value=1.9 Score=32.78 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=30.3
Q ss_pred CCccccccccccccCCCCc-eeecccCcccHhhHHHH---------HhcCCCCCCCccC
Q 016793 30 SCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEW---------CQRSSQCPMCWQP 78 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~W---------lq~s~sCP~CR~~ 78 (382)
.....| ||...... ..+ ..-.|...||..|+.-- ......||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 14 PNALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 335667 89887632 222 23478899999998421 1246789999654
No 101
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.94 E-value=4.7 Score=30.90 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=31.0
Q ss_pred CCccccccccccccCCCCc-eeecccCcccHhhHHHHHh-----cCCCCCCCccCC
Q 016793 30 SCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQPI 79 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~Wlq-----~s~sCP~CR~~l 79 (382)
.+...| ||...+.....+ ..-.|...||..|+.--.. ....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345566 998876322222 2356888999999853221 346799997653
No 102
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=56.30 E-value=3.4 Score=30.65 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=28.8
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~C 75 (382)
..|-.|...|.+........|++.||.+|=.-.-..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998432112357899999999942222233569988
No 103
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=54.40 E-value=1.7 Score=31.73 Aligned_cols=46 Identities=24% Similarity=0.542 Sum_probs=31.2
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCcc
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~ 77 (382)
|..+..|.||... ++-+..-.|...||..|+..-+.. .-.||.|..
T Consensus 2 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 2 MIHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 3457899999875 333444578889999998754432 235888854
No 104
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.70 E-value=6 Score=33.17 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=26.5
Q ss_pred CCCCccccccccccccCCC-CceeecccCcccHhhHHH
Q 016793 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~ 64 (382)
.|.+-..|.+|...|.... ....-.||++||..|...
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3444568999999985322 245678999999999643
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.63 E-value=8.7 Score=29.12 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=30.1
Q ss_pred CCCCCCccccccccccccCCCCcee-ec--cc-CcccHhhHHHHHhc----CCCCCCCccCC
Q 016793 26 GIQDSCDDACSICLEEFSESDPSTV-TS--CK-HEFHLQCVLEWCQR----SSQCPMCWQPI 79 (382)
Q Consensus 26 ~iqd~ed~~C~ICLe~f~~~~~~~v-l~--Cg-H~FC~~CI~~Wlq~----s~sCP~CR~~l 79 (382)
.+...++.-| ||.... ...++. -. |. ..||..|+. +.. ...||.|+...
T Consensus 10 ~~d~~~~~~C-~C~~~~--~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCTTSCCCS-TTCCCS--CSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred ccCCCCCCEE-ECCCCC--CCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3444556777 898864 122221 23 55 589999987 332 34699997643
No 106
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=52.69 E-value=7.4 Score=30.23 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=27.5
Q ss_pred CCCCccccccccccccCCC-CceeecccCcccHhhHHHH
Q 016793 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEW 65 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~W 65 (382)
.|.+...|.+|...|..-. ....-.||++||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4455678999999985322 2455789999999996543
No 107
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=51.61 E-value=3.4 Score=36.98 Aligned_cols=44 Identities=27% Similarity=0.624 Sum_probs=30.7
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCccC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~~ 78 (382)
+..|.+|.+. ++-...-.|...||..|+..=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 5689999965 333444577889999998654432 2369999765
No 108
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.86 E-value=7.6 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=25.6
Q ss_pred CCCCccccccccccccCCC-CceeecccCcccHhhH
Q 016793 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCV 62 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI 62 (382)
.|.+-..|.+|...|..-. ....-.||.+||..|.
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 4455568999999984322 2355789999999994
No 109
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=50.67 E-value=7.5 Score=30.65 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCCccccccccccccCCC-CceeecccCcccHhhHHHH
Q 016793 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEW 65 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~W 65 (382)
+.+...|.+|...|.... ......||++||..|...+
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 334568999999885322 2455789999999996554
No 110
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=50.00 E-value=9.2 Score=28.51 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=23.1
Q ss_pred CCccccccccccccCCCCcee-e-cccCcccHhhHH
Q 016793 30 SCDDACSICLEEFSESDPSTV-T-SCKHEFHLQCVL 63 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~v-l-~CgH~FC~~CI~ 63 (382)
.....|.+|...+.++...+. - .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345689999999855444332 4 788899999963
No 111
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.82 E-value=7.4 Score=30.08 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=26.7
Q ss_pred CCCCccccccccccccCCC-CceeecccCcccHhhHHH
Q 016793 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~ 64 (382)
.|.+...|.+|...|.... ....-.||.+||..|...
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3444568999999985322 235578999999999654
No 112
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.75 E-value=2.9 Score=30.82 Aligned_cols=38 Identities=21% Similarity=0.532 Sum_probs=26.4
Q ss_pred ccccccccccccCCC---Cceeec--ccCcccHhhHHHHHhcC
Q 016793 32 DDACSICLEEFSESD---PSTVTS--CKHEFHLQCVLEWCQRS 69 (382)
Q Consensus 32 d~~C~ICLe~f~~~~---~~~vl~--CgH~FC~~CI~~Wlq~s 69 (382)
-..||-|.-.+.... .++... |++.||..|+..|....
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 357888888774322 133344 99999999999987654
No 113
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=48.08 E-value=9.6 Score=33.22 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=31.6
Q ss_pred Ccccccccccccc--CCCCceeecccCcccHhhHHHHHhcC--CCCCCCcc
Q 016793 31 CDDACSICLEEFS--ESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQ 77 (382)
Q Consensus 31 ed~~C~ICLe~f~--~~~~~~vl~CgH~FC~~CI~~Wlq~s--~sCP~CR~ 77 (382)
.+..|.+|...|. .+.......|.|.+|..|- .|.... -.|-+|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 5789999999863 2233566899999999996 243322 23777754
No 114
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=47.73 E-value=5.8 Score=28.03 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=27.9
Q ss_pred cccccccccccCCCCcee-e-cccCcccHhhHHHHH----hcCCCCCCCc
Q 016793 33 DACSICLEEFSESDPSTV-T-SCKHEFHLQCVLEWC----QRSSQCPMCW 76 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~v-l-~CgH~FC~~CI~~Wl----q~s~sCP~CR 76 (382)
-.|.||...+.++...+. - .|...||..|+.--. .....||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 357899888744333332 3 577899999965321 2467799885
No 115
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.37 E-value=1.7 Score=34.75 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=31.1
Q ss_pred CCCCccccccccccccCCCCceeecccCcccHhhHHHHHhc----CCCCCCCcc
Q 016793 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~ 77 (382)
+..++..|.||...-....-+..-.|...||..|+..=+.. .-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44456789999976421112333478889999998643332 235888843
No 116
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=46.00 E-value=1.5 Score=36.97 Aligned_cols=50 Identities=20% Similarity=0.519 Sum_probs=31.3
Q ss_pred CCCccccccccccccCC-CCceeecccCcccHhhHHHHHhcCCCCCCCccC
Q 016793 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~-~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~ 78 (382)
+.....|.+|...|..- .....-.||.+||..|..........|-.|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 44457899999998432 224567999999999976665555668778543
No 117
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=44.56 E-value=4.6 Score=39.66 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCccccccccccccCCC-CceeecccCcccHhhHHHHHhc-------CCCCCCCccCC
Q 016793 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQR-------SSQCPMCWQPI 79 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~Wlq~-------s~sCP~CR~~l 79 (382)
+.....|.+|...|.... ......||++||..|...++.. ...|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 334568999999884321 2456789999999998766421 23577775544
No 118
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=44.29 E-value=23 Score=28.75 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=21.8
Q ss_pred cccccccccccc------CCCCceeecccCcccHhhHH
Q 016793 32 DDACSICLEEFS------ESDPSTVTSCKHEFHLQCVL 63 (382)
Q Consensus 32 d~~C~ICLe~f~------~~~~~~vl~CgH~FC~~CI~ 63 (382)
...|.||+..-. .++-+.-..|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 468999987521 11223446899999999995
No 119
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.23 E-value=7 Score=33.33 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=24.6
Q ss_pred CCcccccccccccc-C-CCCceeecccCcccHhhHH
Q 016793 30 SCDDACSICLEEFS-E-SDPSTVTSCKHEFHLQCVL 63 (382)
Q Consensus 30 ~ed~~C~ICLe~f~-~-~~~~~vl~CgH~FC~~CI~ 63 (382)
..+..|.+|...|. . +.......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35789999999983 2 1223557899999998854
No 120
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.43 E-value=8.4 Score=34.93 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=25.1
Q ss_pred ccccccccccccCC-CCceeecccCcccHhhHHH
Q 016793 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (382)
Q Consensus 32 d~~C~ICLe~f~~~-~~~~vl~CgH~FC~~CI~~ 64 (382)
+..|.+|...|..- .....-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 57999999998532 2345678999999999544
No 121
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=40.98 E-value=21 Score=35.65 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=33.7
Q ss_pred CCCCccccccccccccCCCCceee--cccCcccHhhHHHHHhc----------CCCCCCCccC
Q 016793 28 QDSCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQR----------SSQCPMCWQP 78 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~vl--~CgH~FC~~CI~~Wlq~----------s~sCP~CR~~ 78 (382)
+|-.+..|.||-+-- +-...- .|...||..||..++-. .-.|-+|.-.
T Consensus 89 ~DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 455578999999763 223333 78899999999999832 2369999643
No 122
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=40.05 E-value=11 Score=30.55 Aligned_cols=46 Identities=22% Similarity=0.523 Sum_probs=31.0
Q ss_pred cccccccccccCCCCcee-e-cccCcccHhhHHHHH----------hcCCCCCCCccC
Q 016793 33 DACSICLEEFSESDPSTV-T-SCKHEFHLQCVLEWC----------QRSSQCPMCWQP 78 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~v-l-~CgH~FC~~CI~~Wl----------q~s~sCP~CR~~ 78 (382)
..|.||...+.+....+. - .|...||..|+.--. .....||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 579999999854434333 2 678899999964211 034679999664
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=39.45 E-value=19 Score=30.53 Aligned_cols=46 Identities=24% Similarity=0.528 Sum_probs=30.6
Q ss_pred CCCccccccccccccCCCCceeecccCcccHhhHHHHH------h-----cCCCCCCCcc
Q 016793 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC------Q-----RSSQCPMCWQ 77 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wl------q-----~s~sCP~CR~ 77 (382)
|..+..|.||.+-- +-+-.-.|-..||..||..-+ + ..-.|+.|.-
T Consensus 54 Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 55677899998762 112223677899999999742 1 1236999944
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.31 E-value=10 Score=34.65 Aligned_cols=34 Identities=18% Similarity=0.488 Sum_probs=25.7
Q ss_pred ccccccccccccCCC-CceeecccCcccHhhHHHH
Q 016793 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEW 65 (382)
Q Consensus 32 d~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~~W 65 (382)
+..|.+|...|..-. ......||++||..|...+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 569999999885332 2456799999999996543
No 125
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=38.88 E-value=3.9 Score=32.31 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=33.3
Q ss_pred CCCCccccccccccccCCC-C-ceeecccCcccHhhHHHHHh--cCCCCCCCccCCCCC
Q 016793 28 QDSCDDACSICLEEFSESD-P-STVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLK 82 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~-~-~~vl~CgH~FC~~CI~~Wlq--~s~sCP~CR~~l~~k 82 (382)
....+..|.||...-.... . +..-.|.-.||..|+..-+. ..-.||.|......+
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 3445789999997531111 1 22246777999999865321 233599996654443
No 126
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=38.81 E-value=3.6 Score=31.00 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=29.9
Q ss_pred CCCCccccccccccccCCCCc-eeecccCcccHhhHHHHHh---cCCCCCCCcc
Q 016793 28 QDSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQ 77 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~-~vl~CgH~FC~~CI~~Wlq---~s~sCP~CR~ 77 (382)
++.+...| ||..... +..+ ..-.|...||..|+.--.. ....||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44556778 9988752 2222 2246888999999753221 2456888854
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.58 E-value=15 Score=28.93 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=24.6
Q ss_pred ccccccccccccCCCC-ceeecccCcccHhhHHH
Q 016793 32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVLE 64 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~-~~vl~CgH~FC~~CI~~ 64 (382)
...|.+|...|..-.. ...-.||.+||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4589999999853222 34578999999999654
No 128
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=37.41 E-value=15 Score=27.62 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=23.9
Q ss_pred ccccccccccccCCC-CceeecccCcccHhhHH
Q 016793 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVL 63 (382)
Q Consensus 32 d~~C~ICLe~f~~~~-~~~vl~CgH~FC~~CI~ 63 (382)
+..|.+|...|..-. ....-.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999999985322 23457899999999964
No 129
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=35.04 E-value=11 Score=27.58 Aligned_cols=50 Identities=24% Similarity=0.561 Sum_probs=31.8
Q ss_pred CCccccccccccccCC-CC-ceeecccCcccHhhHHHHHh-------cCCCCCCCccCC
Q 016793 30 SCDDACSICLEEFSES-DP-STVTSCKHEFHLQCVLEWCQ-------RSSQCPMCWQPI 79 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~-~~-~~vl~CgH~FC~~CI~~Wlq-------~s~sCP~CR~~l 79 (382)
..+..|.||....... .. +..-.|...||..|+..-+. ..-.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4578999999864221 11 22357788999999875331 234688886543
No 130
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=34.76 E-value=14 Score=30.24 Aligned_cols=51 Identities=18% Similarity=0.376 Sum_probs=31.4
Q ss_pred CCCCCCccccccccccccCCCCcee-e--cccCcccHhhHHHHHhc----CCCCCCCccCCCCC
Q 016793 26 GIQDSCDDACSICLEEFSESDPSTV-T--SCKHEFHLQCVLEWCQR----SSQCPMCWQPISLK 82 (382)
Q Consensus 26 ~iqd~ed~~C~ICLe~f~~~~~~~v-l--~CgH~FC~~CI~~Wlq~----s~sCP~CR~~l~~k 82 (382)
..++..+..|.+|.+. + .++. - .|...||..|+. +.. .-.||.|...+..+
T Consensus 9 ~~~~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp -CCCSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCcCCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 3345567899999843 2 1222 2 477899999987 443 23588776555544
No 131
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=33.42 E-value=11 Score=30.73 Aligned_cols=44 Identities=27% Similarity=0.578 Sum_probs=27.2
Q ss_pred ccccccccccCCCC-ceeecccCcccHhhHHHHHhc----CCCCCCCcc
Q 016793 34 ACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (382)
Q Consensus 34 ~C~ICLe~f~~~~~-~~vl~CgH~FC~~CI~~Wlq~----s~sCP~CR~ 77 (382)
.|.||.+.-.+... +..-.|...||..|+..-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57777764211112 233468899999998765543 236999974
No 132
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=33.16 E-value=15 Score=30.05 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=11.3
Q ss_pred cccHhhHHHHHhc
Q 016793 56 EFHLQCVLEWCQR 68 (382)
Q Consensus 56 ~FC~~CI~~Wlq~ 68 (382)
-||.-||..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999963
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.65 E-value=16 Score=29.92 Aligned_cols=12 Identities=25% Similarity=0.886 Sum_probs=10.9
Q ss_pred cccHhhHHHHHh
Q 016793 56 EFHLQCVLEWCQ 67 (382)
Q Consensus 56 ~FC~~CI~~Wlq 67 (382)
-||.-||..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999996
No 134
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.66 E-value=6 Score=30.82 Aligned_cols=33 Identities=24% Similarity=0.675 Sum_probs=20.7
Q ss_pred cccccccccCC--C-CceeecccCcccHhhHHHHHh
Q 016793 35 CSICLEEFSES--D-PSTVTSCKHEFHLQCVLEWCQ 67 (382)
Q Consensus 35 C~ICLe~f~~~--~-~~~vl~CgH~FC~~CI~~Wlq 67 (382)
||-|-..+... . .+....|++.||..|-..|-+
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~ 63 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEE 63 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCT
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhh
Confidence 77676644221 1 133445999999999888733
No 135
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.18 E-value=5.7 Score=38.47 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=33.8
Q ss_pred CCccccccccccccCCCCceee------cccCcccHhhHHHHHhcCCCCCCCccC
Q 016793 30 SCDDACSICLEEFSESDPSTVT------SCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (382)
Q Consensus 30 ~ed~~C~ICLe~f~~~~~~~vl------~CgH~FC~~CI~~Wlq~s~sCP~CR~~ 78 (382)
+....||||-...... ++. .=.+.+|..|-.+|--....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s---~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG---MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE---EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee---EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5678999998875321 111 123688999999998888899999664
No 136
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=31.02 E-value=28 Score=26.24 Aligned_cols=51 Identities=25% Similarity=0.386 Sum_probs=30.8
Q ss_pred CCCCCcccccccccccc-CCCC-ceeecccCcccHhhHHHHH--hcCCCCCCCcc
Q 016793 27 IQDSCDDACSICLEEFS-ESDP-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQ 77 (382)
Q Consensus 27 iqd~ed~~C~ICLe~f~-~~~~-~~vl~CgH~FC~~CI~~Wl--q~s~sCP~CR~ 77 (382)
.....+..|.||.+.-. +.+. +..-.|.-.||..|+..-. ...-.||.|+.
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34556889999987631 1122 2234778899999986422 11235777743
No 137
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=30.44 E-value=4.2 Score=31.41 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=22.8
Q ss_pred cccccc--ccccccCC--C-Cceee-----cccCcccHhhHHHHHh
Q 016793 32 DDACSI--CLEEFSES--D-PSTVT-----SCKHEFHLQCVLEWCQ 67 (382)
Q Consensus 32 d~~C~I--CLe~f~~~--~-~~~vl-----~CgH~FC~~CI~~Wlq 67 (382)
-.-||- |-..+... . .+... .|++.||..|...|=.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 456776 66554221 1 22334 6999999999988744
No 138
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.02 E-value=32 Score=27.88 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=34.4
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
..|..|-..|.+........=+..||..|..+.+.....|-.|..+|....
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 577888777731111233455678999998877655558999998887543
No 139
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.02 E-value=8 Score=29.82 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=27.2
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhc-----CCCCCCCcc
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-----s~sCP~CR~ 77 (382)
..|.||...-..+.-+..-.|...||..|+..-+.. .-.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 377888864211211223477889999998754432 235888854
No 140
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=29.09 E-value=8 Score=28.23 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=25.3
Q ss_pred CCCCCccccccccccccCCCCcee-ec--cc-CcccHhhHHHHHhc----CCCCCCCcc
Q 016793 27 IQDSCDDACSICLEEFSESDPSTV-TS--CK-HEFHLQCVLEWCQR----SSQCPMCWQ 77 (382)
Q Consensus 27 iqd~ed~~C~ICLe~f~~~~~~~v-l~--Cg-H~FC~~CI~~Wlq~----s~sCP~CR~ 77 (382)
+...+..-| ||.... ...++. -. |. ..||..|+. +.. ...||.|+.
T Consensus 5 ~d~~e~~~C-~C~~~~--~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 5 VDPNEPTYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ----CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cCCCCCCEE-ECCCcC--CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 344456677 998864 221211 23 54 589999987 432 346888854
No 141
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.27 E-value=24 Score=31.05 Aligned_cols=45 Identities=24% Similarity=0.481 Sum_probs=30.8
Q ss_pred CCCccccccccccccCCCCcee-e--cccCcccHhhHHHHHhcC----------CCCCCCcc
Q 016793 29 DSCDDACSICLEEFSESDPSTV-T--SCKHEFHLQCVLEWCQRS----------SQCPMCWQ 77 (382)
Q Consensus 29 d~ed~~C~ICLe~f~~~~~~~v-l--~CgH~FC~~CI~~Wlq~s----------~sCP~CR~ 77 (382)
|-.+..|.||-+-- .+.. - .|...||..||..++-.. -.|-+|.-
T Consensus 76 DG~~~yC~wC~~Gg----~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGGR----EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCCS----EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCCC----eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 44577899998752 1222 2 577899999999987431 25888853
No 142
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.80 E-value=43 Score=27.03 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=33.9
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
=..|..|-..|..........=+..||..|..+-+.....|..|...|..
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 46788888877321123344567789999987765444489999888864
No 143
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=26.36 E-value=13 Score=34.47 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=24.8
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhc-----CCCCCCCcc
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~-----s~sCP~CR~ 77 (382)
..|.||...-..+.-+..-.|...||..|+..=+.. .-.||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 357777653211222333478889999999854432 235999964
No 144
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.76 E-value=30 Score=28.12 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=22.1
Q ss_pred cccccccccccC----C---CCceeecccCcccHhhHHHH
Q 016793 33 DACSICLEEFSE----S---DPSTVTSCKHEFHLQCVLEW 65 (382)
Q Consensus 33 ~~C~ICLe~f~~----~---~~~~vl~CgH~FC~~CI~~W 65 (382)
..|.||+..-.. + +-+.-..|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 479999875411 1 22344678899999998653
No 145
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.59 E-value=46 Score=24.26 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
...|..|-..+...+ .+..-+..||..| ..|-.|...|...
T Consensus 9 ~~~C~~C~~~I~~~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE--KVSSLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTT--EEEETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCe--EEEECCeEeeCCC--------CCCCCCCCccCCC
Confidence 357999999885332 3445567777777 5688888887643
No 146
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.31 E-value=5.8 Score=32.43 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=27.1
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
+..||+|..++.. .=++.+|..|-.. ++....||.|.++|.
T Consensus 32 ~~~CP~Cq~eL~~-------~g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-------DNGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE-------ETTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCccee-------cCCEEECccccch-hhccccCcchhhHHH
Confidence 4799999988732 1234457777432 334567999988874
No 147
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=24.97 E-value=5.2 Score=30.19 Aligned_cols=17 Identities=12% Similarity=-0.037 Sum_probs=7.2
Q ss_pred CccccccccchhHHHHH
Q 016793 308 GSENRSENVGITSVSRL 324 (382)
Q Consensus 308 ~~~~~re~agia~v~rm 324 (382)
.+.-.|.|||||+|.-|
T Consensus 44 ~k~~kr~~aGiA~a~A~ 60 (64)
T 3lt7_A 44 DKLEKRLLKLLASSAAL 60 (64)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHhhhHHHHHHH
Confidence 34445559999999765
No 148
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.96 E-value=5.7 Score=31.30 Aligned_cols=39 Identities=21% Similarity=0.622 Sum_probs=21.4
Q ss_pred cccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCC
Q 016793 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (382)
Q Consensus 33 ~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l 79 (382)
..||+|...+..+.. +.+|..|-..+. ....||-|.++|
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~~~-~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKDFS-LQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCEEE-EEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC-------ceECccccccCC-CcccCcchhhHH
Confidence 678888887632211 334555543322 223677777665
No 149
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=24.32 E-value=9.4 Score=28.77 Aligned_cols=27 Identities=26% Similarity=0.620 Sum_probs=19.0
Q ss_pred ecccCcccHhhHHHHHhc-----CCCCCCCcc
Q 016793 51 TSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (382)
Q Consensus 51 l~CgH~FC~~CI~~Wlq~-----s~sCP~CR~ 77 (382)
-.|...||..|+..=+.. .-.||.|..
T Consensus 37 D~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 37 DECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 367789999999754432 236999964
No 150
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.97 E-value=12 Score=27.32 Aligned_cols=45 Identities=24% Similarity=0.467 Sum_probs=25.8
Q ss_pred CCCCccccccccccccCCCCcee-ec--cc-CcccHhhHHHHHhc----CCCCCCCcc
Q 016793 28 QDSCDDACSICLEEFSESDPSTV-TS--CK-HEFHLQCVLEWCQR----SSQCPMCWQ 77 (382)
Q Consensus 28 qd~ed~~C~ICLe~f~~~~~~~v-l~--Cg-H~FC~~CI~~Wlq~----s~sCP~CR~ 77 (382)
+..++.-| ||.... ...++. -. |. ..||..|+. +.. ...||.|+.
T Consensus 5 d~~e~~yC-~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVS--YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ---CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCcEE-ECCCCC--CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34455667 998864 222221 23 55 599999987 332 346888854
No 151
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.58 E-value=18 Score=28.29 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=31.1
Q ss_pred CccccccccccccCC-CC-ceeecccCcccHhhHHHHHh--------cCCCCCCCccCC
Q 016793 31 CDDACSICLEEFSES-DP-STVTSCKHEFHLQCVLEWCQ--------RSSQCPMCWQPI 79 (382)
Q Consensus 31 ed~~C~ICLe~f~~~-~~-~~vl~CgH~FC~~CI~~Wlq--------~s~sCP~CR~~l 79 (382)
.+..|.||...-... .. +..-.|...||..|+..-+. ..-.|+.|....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 467899999763211 12 22247788999999876543 234688885543
No 152
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.19 E-value=58 Score=24.59 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=28.9
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
...|..|-..+.. ..+..-+..||..| +.|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecc---cEEEECCceECccC--------CEecCCCCCCCCC
Confidence 4689999998843 23445667888877 5788898887653
No 153
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.11 E-value=19 Score=29.65 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=19.4
Q ss_pred CceeecccCcccHhhHHHHHhcCCCCCCCccCCCC
Q 016793 47 PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (382)
Q Consensus 47 ~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~ 81 (382)
++....||+.|+ .-+..-..||.|+.....
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 357789999982 112234579999876543
No 154
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.68 E-value=38 Score=27.75 Aligned_cols=39 Identities=15% Similarity=0.427 Sum_probs=27.8
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~ 80 (382)
...|.-|-..+.. ...+..-+..||..| +.|-.|...|.
T Consensus 61 ~~~C~~C~~~I~~--~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIAD--RFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCS--SSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCC--cEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 4589999998843 233445677788777 57888988775
No 155
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=21.94 E-value=11 Score=29.19 Aligned_cols=26 Identities=27% Similarity=0.648 Sum_probs=18.3
Q ss_pred cccCcccHhhHHHHHhc----C-CCCCCCcc
Q 016793 52 SCKHEFHLQCVLEWCQR----S-SQCPMCWQ 77 (382)
Q Consensus 52 ~CgH~FC~~CI~~Wlq~----s-~sCP~CR~ 77 (382)
.|...||..|+..-|.. . -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 67789999999865543 2 36998864
No 156
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.48 E-value=60 Score=24.27 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=27.8
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~kd 83 (382)
...|..|-..+...+. +..-+..||..| +.|-.|...|....
T Consensus 15 ~~~C~~C~~~I~~~e~--v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLER--LCVNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTB--CCBTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceE--EEECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 4689999998744322 224456777777 56788888776543
No 157
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.20 E-value=94 Score=24.78 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=33.2
Q ss_pred ccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 32 d~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
=..|..|...|.. ......=+..||..|..+. ....|..|..+|...
T Consensus 30 CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 30 HFCCFDCDSILAG--EIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GSBCTTTCCBCTT--SEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCcCCCCCCCCc--CEEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 4678888888732 2344456778999997553 356799999988753
No 158
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.76 E-value=83 Score=23.73 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=28.9
Q ss_pred CccccccccccccCCCCceeecccCcccHhhHHHHHhcCCCCCCCccCCCCC
Q 016793 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (382)
Q Consensus 31 ed~~C~ICLe~f~~~~~~~vl~CgH~FC~~CI~~Wlq~s~sCP~CR~~l~~k 82 (382)
....|..|-..+.. ..+..-+..||..| +.|-.|...|...
T Consensus 24 ~~~~C~~C~~~I~~---~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIRG---PFLVALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCCS---CEEEETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCCccCCCEecc---eEEEECCccccccC--------CccCCCCCCCCCC
Confidence 34689999998832 24445677788777 5788898887643
No 159
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=20.14 E-value=14 Score=29.58 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=24.9
Q ss_pred CCCCCCCcccccc-ccchhHHHHHHHHhcCCC
Q 016793 302 ASMPGTGSENRSE-NVGITSVSRLMEQLGTGE 332 (382)
Q Consensus 302 ~~~~~~~~~~~re-~agia~v~rm~e~l~~~~ 332 (382)
-+++||...+..+ +..-++|+|++.||+-.+
T Consensus 50 ~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KG 81 (99)
T 2k4b_A 50 ARVDEIYAQIPQELEWSLATVKTLLGRLVKKE 81 (99)
T ss_dssp EEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhcccCCCHhhHHHHHHHHHHCC
Confidence 4677788777766 677899999999999665
Done!